Query 002434
Match_columns 922
No_of_seqs 566 out of 4041
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 3E-132 7E-137 1195.9 81.2 775 27-911 68-845 (1228)
2 KOG0058 Peptide exporter, ABC 100.0 2E-107 4E-112 934.4 61.9 518 28-547 186-706 (716)
3 KOG0055 Multidrug/pheromone ex 100.0 5E-102 1E-106 934.3 64.2 516 31-546 708-1226(1228)
4 PTZ00265 multidrug resistance 100.0 1.1E-97 2E-102 958.0 98.4 774 31-897 98-991 (1466)
5 COG2274 SunT ABC-type bacterio 100.0 4.4E-94 9.5E-99 857.7 66.8 527 15-545 180-708 (709)
6 KOG0054 Multidrug resistance-a 100.0 6E-90 1.3E-94 849.3 83.9 702 55-898 267-979 (1381)
7 PLN03130 ABC transporter C fam 100.0 4.7E-86 1E-90 857.8 94.8 681 55-875 366-1054(1622)
8 PLN03232 ABC transporter C fam 100.0 3.5E-86 7.6E-91 859.3 91.8 679 55-875 366-1051(1495)
9 PRK11174 cysteine/glutathione 100.0 2.5E-87 5.4E-92 806.8 69.8 506 37-547 70-586 (588)
10 COG1132 MdlB ABC-type multidru 100.0 1.1E-86 2.4E-91 797.2 70.4 510 33-546 55-565 (567)
11 PTZ00265 multidrug resistance 100.0 1.3E-86 2.7E-91 855.7 69.8 512 31-545 867-1465(1466)
12 TIGR00958 3a01208 Conjugate Tr 100.0 1.8E-85 3.9E-90 803.3 69.7 502 37-541 208-710 (711)
13 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-85 7E-90 800.8 71.4 506 34-545 180-685 (686)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.4E-84 5.3E-89 796.4 68.6 502 36-542 200-709 (710)
15 TIGR01193 bacteriocin_ABC ABC- 100.0 3.1E-84 6.6E-89 794.8 68.9 501 38-543 204-707 (708)
16 PRK11160 cysteine/glutathione 100.0 9E-84 2E-88 771.4 68.3 502 38-543 68-572 (574)
17 PRK11176 lipid transporter ATP 100.0 7.2E-83 1.6E-87 767.4 70.1 505 38-545 73-579 (582)
18 TIGR03375 type_I_sec_LssB type 100.0 5E-83 1.1E-87 782.5 68.8 493 38-534 195-689 (694)
19 COG4988 CydD ABC-type transpor 100.0 5.7E-82 1.2E-86 713.1 67.0 508 36-547 46-557 (559)
20 TIGR01846 type_I_sec_HlyB type 100.0 3.4E-82 7.3E-87 774.7 70.5 509 34-545 183-692 (694)
21 PRK10790 putative multidrug tr 100.0 5.1E-82 1.1E-86 760.9 70.9 504 38-547 73-577 (592)
22 TIGR00957 MRP_assoc_pro multi 100.0 3.1E-79 6.7E-84 795.4 93.9 734 53-894 381-1125(1522)
23 PRK10789 putative multidrug tr 100.0 8.9E-81 1.9E-85 745.4 70.2 507 38-547 44-552 (569)
24 TIGR02203 MsbA_lipidA lipid A 100.0 1.5E-80 3.4E-85 745.9 70.8 507 36-545 60-568 (571)
25 KOG0056 Heavy metal exporter H 100.0 1.8E-84 3.9E-89 703.1 32.1 501 44-548 273-777 (790)
26 KOG0057 Mitochondrial Fe/S clu 100.0 2.5E-81 5.3E-86 695.9 57.0 510 32-546 76-587 (591)
27 PRK13657 cyclic beta-1,2-gluca 100.0 2.1E-79 4.6E-84 737.4 72.5 493 51-546 77-571 (588)
28 TIGR02868 CydC thiol reductant 100.0 3.9E-80 8.5E-85 735.3 63.5 462 40-505 63-529 (529)
29 TIGR01192 chvA glucan exporter 100.0 4.8E-79 1E-83 731.8 72.1 495 49-546 75-571 (585)
30 TIGR00957 MRP_assoc_pro multi 100.0 6.1E-80 1.3E-84 802.0 69.2 504 36-544 1011-1519(1522)
31 TIGR02204 MsbA_rel ABC transpo 100.0 3.7E-79 7.9E-84 734.6 69.5 508 37-545 65-575 (576)
32 PLN03130 ABC transporter C fam 100.0 1.1E-78 2.5E-83 788.9 69.1 503 35-546 958-1475(1622)
33 COG4987 CydC ABC-type transpor 100.0 2.9E-78 6.2E-83 671.2 60.4 500 40-543 68-571 (573)
34 TIGR02857 CydD thiol reductant 100.0 3.6E-78 7.7E-83 718.5 64.8 482 33-517 47-529 (529)
35 PTZ00243 ABC transporter; Prov 100.0 3.5E-78 7.7E-83 783.4 68.8 505 40-546 1008-1547(1560)
36 PLN03232 ABC transporter C fam 100.0 6.9E-78 1.5E-82 781.8 66.8 504 35-546 955-1472(1495)
37 TIGR01271 CFTR_protein cystic 100.0 3.5E-74 7.7E-79 745.9 94.0 472 50-543 142-646 (1490)
38 TIGR01842 type_I_sec_PrtD type 100.0 2.9E-76 6.4E-81 703.5 67.6 488 36-533 52-542 (544)
39 COG5265 ATM1 ABC-type transpor 100.0 1.9E-78 4E-83 652.6 41.0 489 52-543 4-496 (497)
40 PTZ00243 ABC transporter; Prov 100.0 7.9E-73 1.7E-77 733.5 93.8 705 50-890 305-1111(1560)
41 TIGR01271 CFTR_protein cystic 100.0 1.2E-74 2.7E-79 750.2 69.3 498 43-548 938-1455(1490)
42 KOG0054 Multidrug resistance-a 100.0 5.6E-75 1.2E-79 716.8 56.5 503 33-544 861-1374(1381)
43 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.4E-72 1.8E-76 665.6 61.4 478 36-525 59-551 (555)
44 COG4618 ArpD ABC-type protease 100.0 7.7E-72 1.7E-76 614.0 47.7 486 41-534 74-561 (580)
45 PRK10522 multidrug transporter 100.0 1.9E-67 4.1E-72 628.0 61.9 473 42-532 60-538 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 3.3E-62 7.2E-67 591.4 56.3 462 39-519 148-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.2E-51 2.7E-56 447.7 27.2 237 307-545 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 3E-51 6.5E-56 410.0 22.5 213 308-534 2-226 (240)
49 COG1135 AbcC ABC-type metal io 100.0 5.3E-49 1.1E-53 412.7 19.4 216 309-535 2-233 (339)
50 COG1125 OpuBA ABC-type proline 100.0 6.8E-49 1.5E-53 399.9 18.5 213 309-535 2-227 (309)
51 PRK14257 phosphate ABC transpo 100.0 6.9E-48 1.5E-52 428.9 28.3 222 305-534 77-314 (329)
52 COG1117 PstB ABC-type phosphat 100.0 1.2E-48 2.7E-53 389.0 19.6 217 308-534 7-238 (253)
53 cd03252 ABCC_Hemolysin The ABC 100.0 3.1E-47 6.8E-52 406.8 27.3 234 309-543 1-235 (237)
54 cd03288 ABCC_SUR2 The SUR doma 100.0 2E-46 4.3E-51 405.3 28.2 240 304-544 15-255 (257)
55 cd03253 ABCC_ATM1_transporter 100.0 6.1E-46 1.3E-50 396.5 27.1 233 309-543 1-234 (236)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 6.5E-46 1.4E-50 395.8 26.4 231 309-540 1-232 (234)
57 cd03254 ABCC_Glucan_exporter_l 100.0 7.2E-46 1.6E-50 394.2 26.6 226 307-534 1-227 (229)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 7.2E-46 1.6E-50 392.0 25.9 220 307-527 1-220 (221)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-45 2.3E-50 395.2 26.6 234 309-542 1-235 (238)
60 COG4615 PvdE ABC-type sideroph 100.0 2E-43 4.4E-48 377.1 42.9 471 35-525 53-529 (546)
61 COG1120 FepC ABC-type cobalami 100.0 3.5E-46 7.5E-51 392.7 20.6 213 308-534 2-229 (258)
62 COG3839 MalK ABC-type sugar tr 100.0 8.9E-46 1.9E-50 403.8 22.0 211 308-534 3-224 (338)
63 cd03245 ABCC_bacteriocin_expor 100.0 1.1E-44 2.3E-49 382.8 25.8 219 307-526 1-220 (220)
64 COG1127 Ttg2A ABC-type transpo 100.0 6.1E-45 1.3E-49 370.0 22.7 217 308-538 8-240 (263)
65 TIGR02314 ABC_MetN D-methionin 100.0 6E-45 1.3E-49 406.1 24.8 215 309-534 2-231 (343)
66 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-45 5.6E-50 378.7 19.5 197 308-523 3-212 (248)
67 COG3842 PotA ABC-type spermidi 100.0 3.1E-45 6.6E-50 401.6 20.5 212 308-535 5-228 (352)
68 PRK13631 cbiO cobalt transport 100.0 2.6E-44 5.6E-49 399.0 27.1 221 308-535 21-267 (320)
69 COG1136 SalX ABC-type antimicr 100.0 1.9E-44 4E-49 372.5 23.8 206 309-524 2-222 (226)
70 COG3840 ThiQ ABC-type thiamine 100.0 6.8E-45 1.5E-49 353.1 18.7 210 309-536 2-222 (231)
71 COG1122 CbiO ABC-type cobalt t 100.0 1E-44 2.2E-49 381.7 21.6 214 308-534 3-229 (235)
72 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-44 3.7E-49 385.2 23.6 216 309-538 1-231 (235)
73 cd03248 ABCC_TAP TAP, the Tran 100.0 4.3E-44 9.4E-49 379.8 24.1 218 305-522 8-226 (226)
74 COG3638 ABC-type phosphate/pho 100.0 2.8E-44 6E-49 364.3 21.1 213 308-533 3-237 (258)
75 cd03260 ABC_PstB_phosphate_tra 100.0 3.3E-44 7.2E-49 380.9 22.1 211 309-531 1-227 (227)
76 COG1124 DppF ABC-type dipeptid 100.0 5E-44 1.1E-48 365.4 21.7 223 308-541 3-240 (252)
77 PRK13650 cbiO cobalt transport 100.0 8E-44 1.7E-48 389.2 24.8 217 308-535 4-231 (279)
78 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.9E-44 1.3E-48 373.8 22.5 209 308-534 4-228 (254)
79 COG2884 FtsE Predicted ATPase 100.0 1.9E-44 4.2E-49 353.0 16.8 207 309-528 2-221 (223)
80 PRK14269 phosphate ABC transpo 100.0 1.7E-43 3.7E-48 380.0 24.1 217 308-534 2-231 (246)
81 PRK11650 ugpC glycerol-3-phosp 100.0 2E-43 4.3E-48 396.9 25.2 213 308-535 3-226 (356)
82 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.9E-43 8.4E-48 367.4 25.6 203 307-528 5-207 (207)
83 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-42 3E-47 378.3 29.6 240 282-541 15-255 (282)
84 PRK11153 metN DL-methionine tr 100.0 6.3E-43 1.4E-47 392.2 27.4 219 309-534 2-231 (343)
85 PRK13647 cbiO cobalt transport 100.0 2.8E-43 6E-48 384.0 23.9 211 308-531 4-225 (274)
86 cd03219 ABC_Mj1267_LivG_branch 100.0 3.3E-43 7.1E-48 375.5 24.0 220 309-533 1-232 (236)
87 COG4178 ABC-type uncharacteriz 100.0 5.3E-40 1.1E-44 378.5 51.4 463 36-518 92-587 (604)
88 PRK13646 cbiO cobalt transport 100.0 8.3E-43 1.8E-47 382.6 26.9 220 309-535 3-237 (286)
89 PRK11432 fbpC ferric transport 100.0 3.2E-43 6.9E-48 394.2 24.1 211 308-534 6-227 (351)
90 PRK13637 cbiO cobalt transport 100.0 1.1E-42 2.3E-47 381.7 27.4 217 309-534 3-235 (287)
91 PRK14273 phosphate ABC transpo 100.0 7.6E-43 1.6E-47 376.8 25.7 217 308-534 7-239 (254)
92 cd03224 ABC_TM1139_LivF_branch 100.0 5.4E-43 1.2E-47 370.2 23.9 216 309-533 1-221 (222)
93 TIGR00972 3a0107s01c2 phosphat 100.0 5.6E-43 1.2E-47 376.3 24.3 216 309-534 2-233 (247)
94 PRK14242 phosphate transporter 100.0 6.1E-43 1.3E-47 377.4 24.6 217 308-534 6-238 (253)
95 PRK10744 pstB phosphate transp 100.0 9E-43 2E-47 377.4 25.8 219 306-534 11-245 (260)
96 TIGR01186 proV glycine betaine 100.0 2.5E-43 5.4E-48 395.2 21.4 201 323-534 5-220 (363)
97 TIGR03265 PhnT2 putative 2-ami 100.0 4.4E-43 9.5E-48 393.7 23.3 212 308-535 4-226 (353)
98 PRK14250 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 372.4 25.4 214 308-534 3-222 (241)
99 cd03250 ABCC_MRP_domain1 Domai 100.0 6.8E-43 1.5E-47 364.8 23.0 200 309-521 1-204 (204)
100 cd03256 ABC_PhnC_transporter A 100.0 5.4E-43 1.2E-47 375.0 22.8 220 309-532 1-233 (241)
101 PRK13635 cbiO cobalt transport 100.0 1.1E-42 2.5E-47 379.9 25.7 217 308-536 5-232 (279)
102 PRK13643 cbiO cobalt transport 100.0 1.7E-42 3.7E-47 380.2 27.2 219 309-534 2-234 (288)
103 PRK13634 cbiO cobalt transport 100.0 1.8E-42 3.8E-47 380.5 26.8 216 309-534 3-236 (290)
104 cd03263 ABC_subfamily_A The AB 100.0 1.2E-42 2.6E-47 367.1 24.3 210 309-531 1-219 (220)
105 cd03296 ABC_CysA_sulfate_impor 100.0 1E-42 2.3E-47 372.3 24.1 214 309-534 3-227 (239)
106 TIGR00960 3a0501s02 Type II (G 100.0 4.4E-43 9.6E-48 369.4 20.7 202 309-522 2-216 (216)
107 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-42 3.1E-47 372.1 24.8 220 309-532 2-234 (243)
108 cd03258 ABC_MetN_methionine_tr 100.0 1E-42 2.3E-47 370.9 23.3 218 309-533 2-230 (233)
109 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-43 1.4E-47 367.3 21.4 202 309-526 1-213 (213)
110 COG1118 CysA ABC-type sulfate/ 100.0 3.1E-43 6.7E-48 368.2 18.6 211 308-534 2-228 (345)
111 PRK13642 cbiO cobalt transport 100.0 2.2E-42 4.8E-47 377.6 25.9 218 308-536 4-232 (277)
112 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-42 3.2E-47 393.4 24.8 220 308-542 3-236 (402)
113 PRK13636 cbiO cobalt transport 100.0 3.2E-42 6.8E-47 377.4 26.6 215 308-535 5-233 (283)
114 TIGR03258 PhnT 2-aminoethylpho 100.0 1.1E-42 2.5E-47 390.9 23.4 212 307-534 4-229 (362)
115 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.9E-42 4.2E-47 369.6 24.0 215 309-534 2-222 (236)
116 PRK14235 phosphate transporter 100.0 2.4E-42 5.2E-47 375.4 25.1 219 306-534 17-252 (267)
117 PRK10851 sulfate/thiosulfate t 100.0 1.7E-42 3.7E-47 388.9 24.6 211 308-534 2-227 (353)
118 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-42 3.6E-47 371.5 23.2 217 309-534 1-226 (242)
119 PRK09452 potA putrescine/sperm 100.0 2E-42 4.4E-47 390.3 24.7 212 308-535 14-236 (375)
120 cd03218 ABC_YhbG The ABC trans 100.0 1.8E-42 4E-47 368.7 23.1 215 309-533 1-222 (232)
121 PRK13651 cobalt transporter AT 100.0 4.6E-42 9.9E-47 378.9 26.6 215 309-534 3-255 (305)
122 PRK14247 phosphate ABC transpo 100.0 2.8E-42 6.1E-47 371.5 24.4 217 308-534 3-235 (250)
123 PRK13537 nodulation ABC transp 100.0 1.5E-42 3.3E-47 383.3 22.9 216 308-534 7-228 (306)
124 PRK14267 phosphate ABC transpo 100.0 3.6E-42 7.8E-47 371.3 24.8 217 308-534 4-238 (253)
125 PRK14274 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 372.4 25.0 217 308-534 12-244 (259)
126 PRK11629 lolD lipoprotein tran 100.0 2.6E-42 5.7E-47 367.8 23.2 213 308-527 5-228 (233)
127 cd03266 ABC_NatA_sodium_export 100.0 3.9E-42 8.5E-47 362.7 24.3 206 309-526 2-218 (218)
128 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-42 3.1E-47 377.5 21.4 211 310-534 26-251 (269)
129 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-42 3.3E-47 362.4 20.6 198 310-523 1-205 (205)
130 PRK14240 phosphate transporter 100.0 4.1E-42 9E-47 370.2 24.6 218 307-534 2-235 (250)
131 PRK13632 cbiO cobalt transport 100.0 5.3E-42 1.1E-46 373.5 25.6 215 308-534 7-232 (271)
132 PRK11000 maltose/maltodextrin 100.0 2.6E-42 5.5E-47 390.4 24.0 211 308-534 3-224 (369)
133 cd03268 ABC_BcrA_bacitracin_re 100.0 2.6E-42 5.6E-47 361.4 22.3 202 309-526 1-208 (208)
134 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.5E-42 3.3E-47 365.8 20.6 207 309-522 1-218 (218)
135 PRK13652 cbiO cobalt transport 100.0 5.7E-42 1.2E-46 374.4 25.6 214 309-535 4-229 (277)
136 PRK13644 cbiO cobalt transport 100.0 4.6E-42 1E-46 374.4 24.8 217 309-534 2-225 (274)
137 PRK14237 phosphate transporter 100.0 5.6E-42 1.2E-46 372.5 25.4 219 306-534 18-252 (267)
138 cd03264 ABC_drug_resistance_li 100.0 2.3E-42 4.9E-47 362.7 21.5 202 309-526 1-211 (211)
139 PRK11614 livF leucine/isoleuci 100.0 6.8E-42 1.5E-46 365.6 25.5 217 308-533 5-226 (237)
140 cd03265 ABC_DrrA DrrA is the A 100.0 2.9E-42 6.3E-47 364.3 22.3 208 309-531 1-219 (220)
141 TIGR03410 urea_trans_UrtE urea 100.0 3.5E-42 7.6E-47 366.1 23.1 210 309-531 1-219 (230)
142 PRK13633 cobalt transporter AT 100.0 5.9E-42 1.3E-46 374.8 25.5 217 308-535 4-235 (280)
143 PRK14259 phosphate ABC transpo 100.0 7.3E-42 1.6E-46 371.9 25.8 218 307-534 12-254 (269)
144 PRK14239 phosphate transporter 100.0 4.6E-42 1E-46 370.3 24.0 217 308-534 5-237 (252)
145 PRK14245 phosphate ABC transpo 100.0 3.9E-42 8.5E-47 370.4 23.3 217 308-534 3-235 (250)
146 PRK14249 phosphate ABC transpo 100.0 7.2E-42 1.6E-46 368.6 25.4 217 308-534 4-236 (251)
147 PRK10575 iron-hydroxamate tran 100.0 3.8E-42 8.2E-47 373.5 23.0 212 308-533 11-237 (265)
148 PRK14251 phosphate ABC transpo 100.0 4.5E-42 9.7E-47 370.2 23.4 217 308-534 4-236 (251)
149 cd03290 ABCC_SUR1_N The SUR do 100.0 5.5E-42 1.2E-46 361.6 23.5 210 310-521 2-218 (218)
150 PRK13640 cbiO cobalt transport 100.0 8.2E-42 1.8E-46 373.9 25.7 215 308-534 5-233 (282)
151 PRK14268 phosphate ABC transpo 100.0 5.3E-42 1.1E-46 371.0 23.7 217 308-534 12-243 (258)
152 PRK10895 lipopolysaccharide AB 100.0 6.6E-42 1.4E-46 366.6 24.2 215 309-533 4-226 (241)
153 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-41 2.4E-46 364.6 25.9 216 309-534 2-226 (240)
154 PRK15079 oligopeptide ABC tran 100.0 6.3E-42 1.4E-46 381.4 24.9 226 308-540 8-259 (331)
155 PRK11231 fecE iron-dicitrate t 100.0 4.7E-42 1E-46 370.8 23.2 211 309-533 3-227 (255)
156 PRK14236 phosphate transporter 100.0 7.2E-42 1.6E-46 372.7 24.7 219 306-534 23-257 (272)
157 TIGR02769 nickel_nikE nickel i 100.0 7.3E-42 1.6E-46 371.3 24.3 223 309-538 3-245 (265)
158 TIGR03411 urea_trans_UrtD urea 100.0 1E-41 2.2E-46 365.4 25.0 220 309-533 3-231 (242)
159 PRK14248 phosphate ABC transpo 100.0 8.5E-42 1.8E-46 371.5 24.6 217 308-534 21-253 (268)
160 TIGR03005 ectoine_ehuA ectoine 100.0 1.4E-41 3E-46 366.6 26.0 216 309-534 1-237 (252)
161 cd03247 ABCC_cytochrome_bd The 100.0 5.4E-42 1.2E-46 350.2 21.6 178 309-526 1-178 (178)
162 PRK13649 cbiO cobalt transport 100.0 1.5E-41 3.3E-46 371.8 26.6 219 309-534 3-235 (280)
163 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.8E-42 8.3E-47 363.4 20.9 205 309-529 1-219 (220)
164 TIGR02211 LolD_lipo_ex lipopro 100.0 6.9E-42 1.5E-46 361.6 22.8 208 309-523 2-220 (221)
165 PRK13641 cbiO cobalt transport 100.0 2E-41 4.4E-46 371.8 27.3 220 308-534 2-235 (287)
166 cd03301 ABC_MalK_N The N-termi 100.0 4.3E-42 9.3E-47 361.1 21.0 202 309-526 1-213 (213)
167 PRK13648 cbiO cobalt transport 100.0 9.6E-42 2.1E-46 371.2 24.3 215 308-534 7-232 (269)
168 PRK13645 cbiO cobalt transport 100.0 1.1E-41 2.5E-46 374.4 25.1 222 306-534 4-241 (289)
169 PRK14243 phosphate transporter 100.0 1.4E-41 3E-46 368.8 25.5 217 308-534 10-249 (264)
170 PRK11264 putative amino-acid A 100.0 7.7E-42 1.7E-46 368.1 23.2 216 309-534 4-234 (250)
171 PRK11607 potG putrescine trans 100.0 1E-41 2.2E-46 385.2 24.8 213 307-535 18-241 (377)
172 cd03257 ABC_NikE_OppD_transpor 100.0 9.2E-42 2E-46 362.3 23.1 211 309-526 2-228 (228)
173 PRK10247 putative ABC transpor 100.0 7.1E-42 1.5E-46 362.5 22.1 208 308-529 7-223 (225)
174 PRK11831 putative ABC transpor 100.0 1.3E-41 2.8E-46 370.1 24.6 213 308-534 7-234 (269)
175 PRK14256 phosphate ABC transpo 100.0 1.4E-41 3E-46 366.5 24.6 218 307-534 3-237 (252)
176 PRK14244 phosphate ABC transpo 100.0 5.8E-42 1.3E-46 369.3 21.6 216 309-534 6-238 (251)
177 TIGR03522 GldA_ABC_ATP gliding 100.0 1.6E-41 3.5E-46 374.8 25.6 215 309-534 3-222 (301)
178 PRK14253 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 365.8 24.5 216 308-533 3-233 (249)
179 PRK14238 phosphate transporter 100.0 2.1E-41 4.7E-46 368.6 25.9 217 308-534 24-256 (271)
180 PRK14261 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 366.7 24.3 217 308-534 6-238 (253)
181 PRK14262 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 366.6 23.6 217 308-534 3-235 (250)
182 TIGR02673 FtsE cell division A 100.0 6.3E-42 1.4E-46 360.1 20.9 200 309-521 2-214 (214)
183 PRK10070 glycine betaine trans 100.0 1.2E-41 2.7E-46 385.7 24.7 199 325-534 42-255 (400)
184 TIGR01288 nodI ATP-binding ABC 100.0 2E-41 4.3E-46 374.6 25.8 216 308-534 4-225 (303)
185 PRK10619 histidine/lysine/argi 100.0 1.3E-41 2.8E-46 367.9 23.6 218 307-534 4-242 (257)
186 PRK11124 artP arginine transpo 100.0 1.7E-41 3.7E-46 363.7 24.2 215 309-533 3-230 (242)
187 PRK13638 cbiO cobalt transport 100.0 3.2E-41 6.9E-46 367.5 26.5 212 309-534 2-226 (271)
188 PRK14270 phosphate ABC transpo 100.0 2.3E-41 4.9E-46 364.7 25.0 217 308-534 4-236 (251)
189 cd03292 ABC_FtsE_transporter F 100.0 9.5E-42 2.1E-46 358.7 21.5 201 309-522 1-214 (214)
190 PRK13548 hmuV hemin importer A 100.0 2.5E-41 5.4E-46 365.6 25.3 211 309-533 3-230 (258)
191 PRK14271 phosphate ABC transpo 100.0 2.9E-41 6.3E-46 368.3 26.0 219 308-534 21-252 (276)
192 cd03225 ABC_cobalt_CbiO_domain 100.0 8.6E-42 1.9E-46 358.3 21.0 200 310-521 1-211 (211)
193 PRK13536 nodulation factor exp 100.0 1.1E-41 2.5E-46 380.4 23.1 216 308-534 41-262 (340)
194 PRK11300 livG leucine/isoleuci 100.0 2.9E-41 6.4E-46 364.7 25.6 221 308-533 5-243 (255)
195 PRK09473 oppD oligopeptide tra 100.0 2.4E-41 5.3E-46 376.8 24.8 228 308-540 12-259 (330)
196 PRK11247 ssuB aliphatic sulfon 100.0 2E-41 4.3E-46 365.3 23.3 203 308-529 12-219 (257)
197 PRK10253 iron-enterobactin tra 100.0 2E-41 4.4E-46 367.9 23.5 213 307-533 6-233 (265)
198 PRK10584 putative ABC transpor 100.0 2.6E-41 5.7E-46 358.9 23.8 207 308-525 6-227 (228)
199 PRK14266 phosphate ABC transpo 100.0 2.7E-41 5.8E-46 363.9 24.0 217 308-534 3-235 (250)
200 PRK11308 dppF dipeptide transp 100.0 2.9E-41 6.3E-46 375.8 25.1 223 308-540 5-252 (327)
201 TIGR03873 F420-0_ABC_ATP propo 100.0 2.2E-41 4.8E-46 365.8 23.2 211 309-533 2-226 (256)
202 PRK14254 phosphate ABC transpo 100.0 4E-41 8.7E-46 368.7 25.5 218 307-534 38-270 (285)
203 COG1131 CcmA ABC-type multidru 100.0 1.8E-41 4E-46 371.5 22.7 213 308-534 4-227 (293)
204 PRK11022 dppD dipeptide transp 100.0 3.4E-41 7.4E-46 375.3 25.2 224 309-540 4-251 (326)
205 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.5E-41 5.5E-46 354.8 22.8 200 309-526 1-211 (211)
206 PRK13639 cbiO cobalt transport 100.0 2.5E-41 5.4E-46 368.9 23.6 213 309-534 2-227 (275)
207 PRK14260 phosphate ABC transpo 100.0 3.1E-41 6.8E-46 365.2 24.0 217 308-534 7-244 (259)
208 cd03235 ABC_Metallic_Cations A 100.0 1.1E-41 2.4E-46 358.1 19.8 197 310-526 1-213 (213)
209 cd03246 ABCC_Protease_Secretio 100.0 2.3E-41 4.9E-46 344.0 21.4 172 309-522 1-173 (173)
210 PRK10771 thiQ thiamine transpo 100.0 7.2E-41 1.6E-45 356.5 26.1 209 309-535 2-221 (232)
211 PRK10908 cell division protein 100.0 2.8E-41 6E-46 357.3 22.6 203 309-524 2-217 (222)
212 PRK14252 phosphate ABC transpo 100.0 4.7E-41 1E-45 365.1 24.7 219 306-534 14-250 (265)
213 PRK14241 phosphate transporter 100.0 3.6E-41 7.9E-46 364.5 23.6 217 308-534 4-243 (258)
214 cd03262 ABC_HisP_GlnQ_permease 100.0 2.2E-41 4.7E-46 355.7 21.1 204 309-522 1-213 (213)
215 PRK14265 phosphate ABC transpo 100.0 8.6E-41 1.9E-45 364.4 26.4 217 308-534 20-259 (274)
216 cd03300 ABC_PotA_N PotA is an 100.0 2.5E-41 5.4E-46 360.0 21.6 210 309-534 1-221 (232)
217 TIGR03415 ABC_choXWV_ATP choli 100.0 3.7E-41 8E-46 379.2 24.0 201 323-534 36-255 (382)
218 cd03269 ABC_putative_ATPase Th 100.0 1.9E-41 4.2E-46 355.4 20.1 204 309-526 1-210 (210)
219 PRK14263 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 363.4 24.1 217 308-534 8-246 (261)
220 PRK14272 phosphate ABC transpo 100.0 6.7E-41 1.5E-45 361.2 24.6 217 308-534 4-237 (252)
221 PRK14275 phosphate ABC transpo 100.0 5.5E-41 1.2E-45 368.0 23.9 217 308-534 39-271 (286)
222 COG0410 LivF ABC-type branched 100.0 7.7E-41 1.7E-45 339.9 22.9 220 309-536 4-229 (237)
223 TIGR00968 3a0106s01 sulfate AB 100.0 7E-41 1.5E-45 357.7 23.6 214 309-534 1-221 (237)
224 PRK15112 antimicrobial peptide 100.0 9.5E-41 2.1E-45 362.9 24.8 226 308-543 4-251 (267)
225 PRK09984 phosphonate/organopho 100.0 1E-40 2.2E-45 361.9 24.7 229 308-543 4-250 (262)
226 COG4555 NatA ABC-type Na+ tran 100.0 1.8E-41 3.9E-46 334.6 17.0 212 309-534 2-223 (245)
227 TIGR01978 sufC FeS assembly AT 100.0 6E-41 1.3E-45 359.6 22.6 213 309-531 1-232 (243)
228 PRK14264 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 368.5 25.3 218 307-534 44-290 (305)
229 PRK14258 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 361.3 24.3 218 307-534 6-246 (261)
230 PRK13547 hmuV hemin importer A 100.0 1.2E-40 2.6E-45 362.2 24.6 215 309-533 2-244 (272)
231 PRK14255 phosphate ABC transpo 100.0 9.2E-41 2E-45 360.2 23.6 217 308-534 5-237 (252)
232 PRK15093 antimicrobial peptide 100.0 1.2E-40 2.7E-45 371.9 24.9 224 309-540 4-256 (330)
233 TIGR01188 drrA daunorubicin re 100.0 1E-40 2.2E-45 368.8 24.0 200 323-534 5-214 (302)
234 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-40 2.5E-45 350.3 22.6 201 309-527 1-212 (213)
235 PRK11144 modC molybdate transp 100.0 1E-40 2.2E-45 375.6 23.4 210 309-535 2-220 (352)
236 PRK11701 phnK phosphonate C-P 100.0 3.1E-40 6.7E-45 357.3 26.2 218 308-534 6-242 (258)
237 PRK14246 phosphate ABC transpo 100.0 1.9E-40 4.1E-45 358.3 24.4 217 308-534 10-242 (257)
238 PRK10419 nikE nickel transport 100.0 2.2E-40 4.8E-45 360.1 24.7 227 309-542 4-250 (268)
239 COG4175 ProV ABC-type proline/ 100.0 3.3E-41 7.1E-46 352.8 17.4 217 308-535 4-256 (386)
240 cd03234 ABCG_White The White s 100.0 1.5E-40 3.1E-45 352.8 22.3 213 309-526 4-226 (226)
241 cd03299 ABC_ModC_like Archeal 100.0 2E-40 4.4E-45 353.7 23.3 209 309-534 1-220 (235)
242 PRK10418 nikD nickel transport 100.0 4.8E-40 1E-44 354.9 24.9 223 308-544 4-243 (254)
243 cd03233 ABC_PDR_domain1 The pl 100.0 2.6E-40 5.7E-45 344.6 22.1 190 309-526 4-202 (202)
244 PRK11248 tauB taurine transpor 100.0 3.2E-40 6.9E-45 356.2 23.0 206 309-529 2-216 (255)
245 TIGR03740 galliderm_ABC gallid 100.0 3.8E-40 8.2E-45 348.9 22.8 204 309-530 1-210 (223)
246 TIGR02982 heterocyst_DevA ABC 100.0 2.5E-40 5.3E-45 349.6 21.2 207 309-522 2-219 (220)
247 COG1137 YhbG ABC-type (unclass 100.0 3.7E-41 8E-46 332.1 12.6 223 308-535 4-230 (243)
248 cd03230 ABC_DR_subfamily_A Thi 100.0 4.5E-40 9.7E-45 334.5 20.7 170 309-522 1-173 (173)
249 TIGR02142 modC_ABC molybdenum 100.0 8.8E-40 1.9E-44 368.5 24.9 211 313-535 4-223 (354)
250 cd03228 ABCC_MRP_Like The MRP 100.0 6.4E-40 1.4E-44 332.7 21.2 171 309-521 1-171 (171)
251 cd03229 ABC_Class3 This class 100.0 6.3E-40 1.4E-44 334.9 20.8 172 309-521 1-178 (178)
252 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-39 2.4E-44 343.1 22.7 203 310-526 3-214 (214)
253 cd03213 ABCG_EPDR ABCG transpo 100.0 8.8E-40 1.9E-44 338.5 21.6 183 308-526 3-194 (194)
254 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-39 3.6E-44 350.6 24.5 217 308-534 3-239 (253)
255 cd03232 ABC_PDR_domain2 The pl 100.0 9E-40 2E-44 337.9 20.7 182 308-526 3-192 (192)
256 cd03215 ABC_Carb_Monos_II This 100.0 1.6E-39 3.4E-44 333.2 20.2 172 308-522 4-182 (182)
257 PRK09544 znuC high-affinity zi 100.0 3.9E-39 8.5E-44 346.6 24.2 208 308-542 4-217 (251)
258 PRK15056 manganese/iron transp 100.0 1.9E-39 4.1E-44 353.7 21.8 209 308-533 6-230 (272)
259 COG1123 ATPase components of v 100.0 1.8E-39 3.8E-44 369.8 22.1 225 308-542 280-529 (539)
260 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-39 6.6E-44 326.0 20.6 164 309-521 1-164 (166)
261 CHL00131 ycf16 sulfate ABC tra 100.0 4.7E-39 1E-43 346.9 23.2 217 308-531 7-239 (252)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.5E-39 1.2E-43 334.2 22.5 185 309-532 1-192 (200)
263 PRK09580 sufC cysteine desulfu 100.0 7E-39 1.5E-43 344.7 23.8 218 309-531 2-233 (248)
264 TIGR03608 L_ocin_972_ABC putat 100.0 2.2E-39 4.8E-44 338.7 19.2 193 311-517 1-206 (206)
265 COG0411 LivG ABC-type branched 100.0 2.4E-39 5.2E-44 331.4 17.9 220 309-535 5-241 (250)
266 cd03214 ABC_Iron-Siderophores_ 100.0 4.3E-39 9.3E-44 329.4 19.5 177 310-526 1-180 (180)
267 PRK03695 vitamin B12-transport 100.0 1.3E-38 2.8E-43 342.4 23.9 209 310-533 2-222 (248)
268 COG0444 DppD ABC-type dipeptid 100.0 9.5E-39 2.1E-43 340.8 21.9 224 309-540 2-251 (316)
269 PRK15439 autoinducer 2 ABC tra 100.0 1E-38 2.2E-43 377.6 24.0 212 308-533 11-229 (510)
270 TIGR02770 nickel_nikD nickel i 100.0 6.6E-39 1.4E-43 341.0 19.8 199 326-534 1-216 (230)
271 PRK10261 glutathione transport 100.0 1.5E-38 3.2E-43 383.7 25.0 222 308-540 313-561 (623)
272 cd03216 ABC_Carb_Monos_I This 100.0 2E-38 4.3E-43 319.1 21.7 159 309-524 1-162 (163)
273 COG4559 ABC-type hemin transpo 100.0 1.8E-38 3.9E-43 315.7 20.7 212 309-534 2-231 (259)
274 cd03231 ABC_CcmA_heme_exporter 100.0 2E-38 4.3E-43 330.3 21.9 194 309-517 1-198 (201)
275 COG4619 ABC-type uncharacteriz 100.0 4.1E-39 8.9E-44 308.7 15.0 192 322-523 14-213 (223)
276 PRK13549 xylose transporter AT 100.0 1.6E-38 3.4E-43 376.0 23.6 215 308-532 5-231 (506)
277 TIGR01184 ntrCD nitrate transp 100.0 1E-38 2.2E-43 339.4 19.8 193 327-531 1-202 (230)
278 cd03267 ABC_NatA_like Similar 100.0 2.1E-38 4.6E-43 338.3 22.0 196 323-526 33-236 (236)
279 PRK09700 D-allose transporter 100.0 1.3E-38 2.8E-43 377.2 21.9 216 308-533 5-234 (510)
280 PRK10762 D-ribose transporter 100.0 1.8E-38 3.8E-43 375.1 22.6 214 309-532 5-229 (501)
281 PRK13540 cytochrome c biogenes 100.0 2.4E-38 5.3E-43 329.4 20.4 193 309-516 2-198 (200)
282 PRK13538 cytochrome c biogenes 100.0 3.9E-38 8.4E-43 328.9 21.5 194 309-517 2-202 (204)
283 PRK10938 putative molybdenum t 100.0 4E-38 8.7E-43 371.3 22.9 211 309-534 4-225 (490)
284 COG4598 HisP ABC-type histidin 100.0 2.9E-38 6.2E-43 305.6 17.5 213 308-534 6-242 (256)
285 PRK10982 galactose/methyl gala 100.0 4E-38 8.7E-43 371.3 22.5 212 311-532 1-222 (491)
286 PRK11288 araG L-arabinose tran 100.0 8.2E-38 1.8E-42 369.4 24.3 211 308-528 4-224 (501)
287 COG1123 ATPase components of v 100.0 4.9E-38 1.1E-42 358.1 21.3 224 308-540 5-252 (539)
288 PRK13539 cytochrome c biogenes 100.0 1.2E-37 2.6E-42 325.9 21.8 193 309-519 3-200 (207)
289 COG4181 Predicted ABC-type tra 100.0 3.8E-38 8.2E-43 302.9 15.8 207 308-525 6-227 (228)
290 PRK15134 microcin C ABC transp 100.0 8.4E-38 1.8E-42 371.7 22.3 219 308-534 275-516 (529)
291 PRK13543 cytochrome c biogenes 100.0 1.7E-37 3.8E-42 326.4 21.8 195 308-519 11-212 (214)
292 TIGR01189 ccmA heme ABC export 100.0 1.3E-37 2.8E-42 323.4 20.5 192 309-516 1-197 (198)
293 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-37 2.4E-42 368.4 22.8 213 309-531 2-228 (500)
294 PRK10261 glutathione transport 100.0 9.2E-38 2E-42 376.8 22.4 219 308-534 12-259 (623)
295 PRK15134 microcin C ABC transp 100.0 1.5E-37 3.3E-42 369.5 23.5 219 308-534 5-247 (529)
296 COG4172 ABC-type uncharacteriz 100.0 2.5E-37 5.4E-42 331.9 22.1 222 308-540 276-524 (534)
297 TIGR01257 rim_protein retinal- 100.0 2.3E-35 4.9E-40 380.6 43.9 218 308-534 1937-2160(2272)
298 PRK13546 teichoic acids export 100.0 7.3E-37 1.6E-41 330.9 25.4 215 308-542 4-241 (264)
299 COG4608 AppF ABC-type oligopep 100.0 1.2E-37 2.5E-42 326.0 18.2 193 309-541 5-208 (268)
300 PRK13549 xylose transporter AT 100.0 1.9E-37 4.2E-42 366.7 22.2 218 308-532 259-493 (506)
301 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-37 4.6E-42 367.7 22.1 219 308-533 279-517 (520)
302 TIGR02324 CP_lyasePhnL phospho 100.0 2.5E-37 5.4E-42 327.6 20.3 202 309-517 2-222 (224)
303 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-37 2.7E-42 375.3 19.4 216 308-532 17-255 (617)
304 PLN03211 ABC transporter G-25; 100.0 1.7E-37 3.6E-42 374.3 20.0 202 323-533 80-296 (659)
305 COG1129 MglA ABC-type sugar tr 100.0 6.2E-37 1.3E-41 347.0 23.2 209 308-528 8-229 (500)
306 COG4604 CeuD ABC-type enteroch 100.0 1.1E-37 2.4E-42 306.5 14.7 212 309-534 2-226 (252)
307 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-37 7.7E-42 365.7 21.5 215 309-533 1-258 (520)
308 TIGR03771 anch_rpt_ABC anchore 100.0 3.1E-37 6.8E-42 326.5 18.7 186 332-534 1-202 (223)
309 PRK10535 macrolide transporter 100.0 7E-37 1.5E-41 370.4 24.2 218 308-532 4-231 (648)
310 PRK13545 tagH teichoic acids e 100.0 1.5E-36 3.2E-41 347.3 25.3 211 308-542 21-241 (549)
311 TIGR01166 cbiO cobalt transpor 100.0 3.4E-37 7.3E-42 318.2 18.1 174 323-507 4-189 (190)
312 TIGR01257 rim_protein retinal- 100.0 7.8E-37 1.7E-41 394.0 25.3 219 307-534 927-1150(2272)
313 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-36 3.7E-41 321.0 21.8 196 309-526 23-224 (224)
314 PRK13541 cytochrome c biogenes 100.0 1.1E-36 2.3E-41 315.8 19.6 188 309-515 2-193 (195)
315 COG4161 ArtP ABC-type arginine 100.0 4.3E-37 9.3E-42 292.5 14.5 211 308-532 2-229 (242)
316 PRK09700 D-allose transporter 100.0 2E-36 4.3E-41 358.5 22.9 211 308-530 265-495 (510)
317 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-36 4E-41 358.1 21.7 221 308-530 257-489 (500)
318 COG4525 TauB ABC-type taurine 100.0 2.3E-36 4.9E-41 296.6 17.8 203 309-528 4-219 (259)
319 COG4148 ModC ABC-type molybdat 100.0 1.3E-36 2.9E-41 313.2 15.4 196 328-534 15-219 (352)
320 PRK10762 D-ribose transporter 100.0 5E-36 1.1E-40 354.2 21.7 209 308-531 257-482 (501)
321 PRK15064 ABC transporter ATP-b 100.0 8.1E-36 1.8E-40 354.8 22.2 208 309-534 2-243 (530)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-35 2.2E-40 355.2 22.2 209 308-534 4-249 (552)
323 TIGR01187 potA spermidine/putr 100.0 6.2E-36 1.3E-40 333.4 18.8 180 342-534 1-191 (325)
324 PRK11288 araG L-arabinose tran 100.0 5.8E-36 1.3E-40 353.7 19.7 211 308-532 257-484 (501)
325 COG3845 ABC-type uncharacteriz 100.0 1.8E-35 4E-40 327.9 21.2 213 308-527 4-223 (501)
326 TIGR00956 3a01205 Pleiotropic 100.0 9.8E-36 2.1E-40 384.4 22.0 213 308-531 759-991 (1394)
327 PRK11819 putative ABC transpor 100.0 2.7E-35 5.8E-40 351.7 24.2 209 308-534 6-251 (556)
328 PRK15064 ABC transporter ATP-b 100.0 1.9E-35 4.1E-40 351.7 22.7 202 308-535 319-527 (530)
329 PRK15177 Vi polysaccharide exp 100.0 2.2E-35 4.7E-40 310.0 20.2 188 326-536 2-195 (213)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.5E-35 5.5E-40 290.3 18.6 143 309-521 1-144 (144)
331 KOG0060 Long-chain acyl-CoA tr 100.0 4.5E-33 9.8E-38 311.5 38.7 416 92-519 186-641 (659)
332 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.2E-35 7E-40 315.0 19.9 192 316-532 1-206 (246)
333 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.7E-35 3.6E-40 318.6 16.7 200 312-526 4-220 (255)
334 PRK15439 autoinducer 2 ABC tra 100.0 4E-35 8.7E-40 346.9 20.8 211 308-533 268-492 (510)
335 PRK10938 putative molybdenum t 100.0 5.4E-35 1.2E-39 344.8 18.7 204 308-525 260-484 (490)
336 COG4152 ABC-type uncharacteriz 100.0 6.2E-35 1.3E-39 296.1 16.2 213 308-534 2-220 (300)
337 PRK10982 galactose/methyl gala 100.0 1E-34 2.2E-39 342.3 20.0 211 308-530 250-477 (491)
338 COG1101 PhnK ABC-type uncharac 100.0 3.4E-34 7.3E-39 285.9 16.9 203 323-527 18-232 (263)
339 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-33 2.4E-38 283.0 19.6 155 310-521 1-157 (157)
340 cd03222 ABC_RNaseL_inhibitor T 100.0 5.7E-34 1.2E-38 289.0 17.2 146 312-524 4-152 (177)
341 PRK11819 putative ABC transpor 100.0 1.7E-33 3.7E-38 336.2 22.9 200 308-534 324-534 (556)
342 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-33 3.8E-38 336.0 22.5 198 308-532 322-530 (552)
343 PLN03073 ABC transporter F fam 100.0 2.4E-33 5.2E-38 339.9 23.2 198 308-531 508-712 (718)
344 COG4172 ABC-type uncharacteriz 100.0 2.2E-33 4.7E-38 301.7 19.5 226 309-542 7-257 (534)
345 PRK10636 putative ABC transpor 100.0 2.3E-33 5E-38 339.0 22.1 198 308-531 312-515 (638)
346 PLN03140 ABC transporter G fam 100.0 3.6E-33 7.8E-38 359.3 25.0 213 308-530 867-1107(1470)
347 COG1119 ModF ABC-type molybden 100.0 4.6E-33 1E-37 285.2 20.5 209 308-527 31-256 (257)
348 PRK11147 ABC transporter ATPas 100.0 3E-33 6.5E-38 338.6 22.6 198 308-531 319-526 (635)
349 PRK13409 putative ATPase RIL; 100.0 3.9E-33 8.5E-38 332.4 21.2 192 308-528 340-537 (590)
350 PRK10636 putative ABC transpor 100.0 7.5E-33 1.6E-37 334.5 22.7 207 309-533 2-236 (638)
351 COG4167 SapF ABC-type antimicr 100.0 3.9E-33 8.4E-38 270.7 15.4 227 309-545 5-253 (267)
352 cd03238 ABC_UvrA The excision 100.0 9.6E-33 2.1E-37 279.8 18.1 156 323-521 7-165 (176)
353 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-32 2.6E-37 355.9 19.9 206 324-532 74-299 (1394)
354 PRK11147 ABC transporter ATPas 100.0 1.4E-31 3.1E-36 324.1 25.8 206 309-534 4-244 (635)
355 COG4674 Uncharacterized ABC-ty 100.0 6.5E-32 1.4E-36 265.5 15.9 213 308-534 5-236 (249)
356 COG1134 TagH ABC-type polysacc 100.0 3.9E-31 8.4E-36 271.6 20.2 187 323-533 39-236 (249)
357 PLN03140 ABC transporter G fam 100.0 5.5E-32 1.2E-36 348.4 17.4 207 324-533 178-427 (1470)
358 COG0396 sufC Cysteine desulfur 100.0 6.1E-31 1.3E-35 266.3 20.9 214 308-533 3-233 (251)
359 PRK13409 putative ATPase RIL; 100.0 4.4E-32 9.6E-37 323.4 14.9 193 312-520 77-287 (590)
360 COG0488 Uup ATPase components 100.0 4.5E-31 9.8E-36 307.1 21.5 208 308-534 3-241 (530)
361 COG4136 ABC-type uncharacteriz 100.0 1.8E-31 3.9E-36 251.5 14.4 194 308-517 2-207 (213)
362 PLN03073 ABC transporter F fam 100.0 1.1E-30 2.4E-35 316.8 21.6 220 307-533 176-431 (718)
363 KOG0061 Transporter, ABC super 100.0 7.6E-31 1.7E-35 313.4 18.7 219 307-533 24-260 (613)
364 COG4586 ABC-type uncharacteriz 100.0 7.5E-31 1.6E-35 270.5 14.3 207 324-538 37-251 (325)
365 PF00005 ABC_tran: ABC transpo 100.0 8.7E-31 1.9E-35 255.5 11.0 136 327-475 1-137 (137)
366 COG4107 PhnK ABC-type phosphon 100.0 6.9E-30 1.5E-34 246.2 16.2 223 309-542 7-251 (258)
367 COG0488 Uup ATPase components 100.0 4.2E-28 9.1E-33 282.3 23.7 201 307-533 320-525 (530)
368 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-28 2.5E-33 261.3 17.1 191 323-526 7-226 (226)
369 COG4133 CcmA ABC-type transpor 100.0 5.4E-29 1.2E-33 244.7 12.8 186 309-509 3-194 (209)
370 KOG0064 Peroxisomal long-chain 100.0 3.5E-25 7.6E-30 244.7 38.7 335 155-511 288-675 (728)
371 cd03271 ABC_UvrA_II The excisi 100.0 6.2E-28 1.4E-32 258.8 16.8 194 325-528 9-261 (261)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 4.2E-28 9E-33 251.4 13.7 164 328-519 14-190 (197)
373 KOG0059 Lipid exporter ABCA1 a 100.0 5.6E-28 1.2E-32 300.7 16.4 217 307-536 563-790 (885)
374 COG4778 PhnL ABC-type phosphon 99.9 1.3E-27 2.8E-32 230.0 10.3 202 309-519 5-227 (235)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.6E-27 1E-31 252.1 12.7 192 308-518 3-234 (243)
376 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.7E-27 1E-31 247.0 12.0 191 308-521 5-210 (213)
377 COG1129 MglA ABC-type sugar tr 99.9 6.7E-25 1.4E-29 249.3 19.2 214 309-530 264-487 (500)
378 COG4138 BtuD ABC-type cobalami 99.9 4.8E-26 1E-30 220.0 7.0 207 309-534 4-222 (248)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.8E-25 6.1E-30 239.5 11.8 181 337-518 25-242 (251)
380 cd03240 ABC_Rad50 The catalyti 99.9 4.6E-25 9.9E-30 230.0 12.8 164 329-519 15-197 (204)
381 KOG0927 Predicted transporter 99.9 1.5E-25 3.3E-30 249.7 9.5 196 308-528 389-591 (614)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.2E-25 2.7E-30 235.5 7.3 184 308-519 5-204 (212)
383 KOG0065 Pleiotropic drug resis 99.9 6.3E-25 1.4E-29 266.8 12.2 199 323-531 803-1019(1391)
384 PRK00349 uvrA excinuclease ABC 99.9 5.8E-24 1.2E-28 261.8 18.9 103 435-537 818-931 (943)
385 PRK00635 excinuclease ABC subu 99.9 1.8E-23 3.9E-28 266.9 21.6 211 308-534 600-907 (1809)
386 COG3845 ABC-type uncharacteriz 99.9 1.7E-22 3.6E-27 225.0 21.8 213 307-530 256-489 (501)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-23 2.4E-28 226.4 10.0 182 338-519 23-233 (247)
388 PF00664 ABC_membrane: ABC tra 99.9 2.2E-20 4.8E-25 199.8 34.6 221 43-264 54-275 (275)
389 KOG0927 Predicted transporter 99.9 3.7E-22 8.1E-27 222.8 15.8 219 306-534 73-310 (614)
390 TIGR00630 uvra excinuclease AB 99.9 1.1E-21 2.4E-26 241.3 21.4 97 435-531 816-923 (924)
391 KOG0062 ATPase component of AB 99.9 6.8E-22 1.5E-26 219.7 13.4 210 306-546 360-575 (582)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.5E-21 3.3E-26 202.5 12.8 170 327-521 12-192 (198)
393 KOG0066 eIF2-interacting prote 99.9 2.4E-21 5.3E-26 209.4 14.0 187 308-519 586-776 (807)
394 KOG0062 ATPase component of AB 99.9 4.8E-22 1E-26 220.9 7.4 199 306-534 78-286 (582)
395 COG4170 SapD ABC-type antimicr 99.8 1.5E-20 3.4E-25 186.7 12.3 220 310-540 5-256 (330)
396 COG1245 Predicted ATPase, RNas 99.8 2.9E-20 6.4E-25 203.5 14.9 168 326-518 351-530 (591)
397 cd03239 ABC_SMC_head The struc 99.8 3.6E-20 7.8E-25 188.9 12.7 85 429-519 83-172 (178)
398 KOG0065 Pleiotropic drug resis 99.8 1.3E-19 2.8E-24 221.0 13.0 206 323-533 127-351 (1391)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.3E-19 5E-24 186.8 11.5 144 327-525 17-171 (200)
400 KOG2355 Predicted ABC-type tra 99.8 1.2E-18 2.6E-23 173.1 15.2 210 306-532 11-236 (291)
401 cd01128 rho_factor Transcripti 99.8 3.5E-19 7.6E-24 190.1 9.9 198 332-546 11-230 (249)
402 cd03241 ABC_RecN RecN ATPase i 99.8 1.2E-18 2.7E-23 190.4 13.6 76 446-521 170-249 (276)
403 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.3E-18 2.9E-23 182.5 11.2 181 327-521 14-211 (213)
404 COG0178 UvrA Excinuclease ATPa 99.8 1.1E-17 2.4E-22 194.8 17.4 100 440-539 816-925 (935)
405 COG1245 Predicted ATPase, RNas 99.8 2.6E-18 5.7E-23 188.4 11.3 190 313-518 79-287 (591)
406 COG2401 ABC-type ATPase fused 99.7 7.9E-18 1.7E-22 182.4 14.0 199 304-524 353-589 (593)
407 KOG0058 Peptide exporter, ABC 99.7 1.1E-16 2.4E-21 186.2 23.9 188 715-907 134-321 (716)
408 PRK00635 excinuclease ABC subu 99.7 3E-17 6.4E-22 210.6 19.7 209 326-535 1505-1798(1809)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 4E-17 8.7E-22 164.2 12.8 136 330-519 14-155 (162)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 4.3E-17 9.4E-22 172.1 8.9 153 323-527 16-175 (222)
411 cd03242 ABC_RecF RecF is a rec 99.7 2.6E-16 5.7E-21 171.5 14.7 190 327-522 12-269 (270)
412 cd03283 ABC_MutS-like MutS-lik 99.6 5.3E-16 1.2E-20 161.1 10.2 144 324-517 14-163 (199)
413 TIGR00630 uvra excinuclease AB 99.6 1.2E-15 2.7E-20 188.3 13.8 100 435-534 475-584 (924)
414 cd03243 ABC_MutS_homologs The 99.6 7.9E-16 1.7E-20 160.5 10.1 152 330-530 22-176 (202)
415 PRK00349 uvrA excinuclease ABC 99.6 1.3E-15 2.8E-20 188.5 13.5 100 435-534 477-586 (943)
416 cd00820 PEPCK_HprK Phosphoenol 99.6 7.7E-16 1.7E-20 141.8 5.5 76 324-407 2-77 (107)
417 TIGR02858 spore_III_AA stage I 99.6 6.1E-15 1.3E-19 159.3 12.5 142 338-532 112-268 (270)
418 KOG0066 eIF2-interacting prote 99.6 3.6E-15 7.8E-20 162.0 8.3 196 308-529 264-495 (807)
419 TIGR00606 rad50 rad50. This fa 99.5 5.6E-14 1.2E-18 183.2 12.8 118 396-517 1153-1288(1311)
420 KOG0063 RNAse L inhibitor, ABC 99.5 1.1E-13 2.3E-18 151.1 12.6 181 316-519 343-532 (592)
421 cd03284 ABC_MutS1 MutS1 homolo 99.5 4.7E-14 1E-18 148.5 8.8 157 324-531 18-179 (216)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1E-13 2.2E-18 144.4 10.6 140 323-511 15-157 (204)
423 PRK00064 recF recombination pr 99.5 7.9E-13 1.7E-17 149.8 16.5 76 445-522 272-359 (361)
424 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.5E-13 3.3E-18 145.2 8.8 73 446-518 136-212 (220)
425 PF00664 ABC_membrane: ABC tra 99.4 2.9E-11 6.3E-16 129.2 21.7 172 732-909 3-176 (275)
426 PHA02562 46 endonuclease subun 99.4 5E-13 1.1E-17 161.0 7.7 93 429-522 445-555 (562)
427 TIGR00958 3a01208 Conjugate Tr 99.4 7.4E-11 1.6E-15 145.7 25.7 183 715-903 148-330 (711)
428 PRK07721 fliI flagellum-specif 99.4 1.3E-11 2.9E-16 141.7 17.4 178 323-530 145-340 (438)
429 PRK11174 cysteine/glutathione 99.3 1.6E-10 3.4E-15 140.1 26.5 179 717-900 11-189 (588)
430 cd03281 ABC_MSH5_euk MutS5 hom 99.3 9.7E-12 2.1E-16 130.7 11.2 135 325-511 17-160 (213)
431 smart00534 MUTSac ATPase domai 99.3 4.6E-12 1E-16 130.3 5.5 80 442-522 57-139 (185)
432 PTZ00132 GTP-binding nuclear p 99.2 4E-12 8.7E-17 133.9 4.9 44 450-493 156-204 (215)
433 TIGR00634 recN DNA repair prot 99.2 2.9E-11 6.2E-16 145.0 9.9 77 445-521 439-519 (563)
434 TIGR02857 CydD thiol reductant 99.2 2.5E-09 5.4E-14 128.0 25.2 163 731-898 6-168 (529)
435 TIGR01192 chvA glucan exporter 99.2 3.1E-09 6.8E-14 128.5 26.0 177 716-901 7-183 (585)
436 PRK11160 cysteine/glutathione 99.2 3.4E-09 7.4E-14 127.9 26.1 171 718-890 6-176 (574)
437 PRK10869 recombination and rep 99.2 5.3E-11 1.2E-15 141.6 10.2 76 446-521 430-509 (553)
438 TIGR02203 MsbA_lipidA lipid A 99.2 4.2E-09 9.1E-14 127.3 26.6 178 721-904 7-184 (571)
439 TIGR02868 CydC thiol reductant 99.2 3.5E-09 7.7E-14 126.7 25.5 110 780-891 61-170 (529)
440 TIGR01069 mutS2 MutS2 family p 99.2 3.3E-11 7.1E-16 147.9 8.1 144 308-507 295-447 (771)
441 TIGR01194 cyc_pep_trnsptr cycl 99.2 2.7E-09 5.8E-14 128.4 23.4 170 715-896 4-174 (555)
442 PRK10790 putative multidrug tr 99.2 4.9E-09 1.1E-13 127.2 25.9 178 719-900 14-191 (592)
443 TIGR01193 bacteriocin_ABC ABC- 99.2 4.8E-09 1E-13 130.0 26.0 182 716-904 144-325 (708)
444 PRK14079 recF recombination pr 99.1 8.2E-10 1.8E-14 124.7 15.8 76 445-525 262-346 (349)
445 TIGR00611 recf recF protein. A 99.1 6.8E-10 1.5E-14 125.9 14.9 63 445-509 274-345 (365)
446 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.5E-10 3.2E-15 122.1 8.8 138 324-511 18-160 (222)
447 KOG0063 RNAse L inhibitor, ABC 99.1 1.8E-10 3.9E-15 126.3 9.3 170 335-518 98-287 (592)
448 PRK13695 putative NTPase; Prov 99.1 6.7E-11 1.5E-15 120.4 5.7 81 442-525 74-156 (174)
449 PRK08533 flagellar accessory p 99.1 9.4E-10 2E-14 117.1 13.9 157 309-518 8-184 (230)
450 COG0178 UvrA Excinuclease ATPa 99.1 6.8E-10 1.5E-14 130.7 13.5 107 428-535 464-579 (935)
451 PRK10522 multidrug transporter 99.1 8.3E-09 1.8E-13 124.0 22.8 117 780-899 56-172 (547)
452 TIGR01846 type_I_sec_HlyB type 99.1 2E-08 4.4E-13 124.0 26.5 123 774-899 181-303 (694)
453 TIGR02788 VirB11 P-type DNA tr 99.1 2.4E-10 5.2E-15 127.0 8.0 143 330-532 137-280 (308)
454 TIGR02204 MsbA_rel ABC transpo 99.0 3.3E-08 7.2E-13 119.7 25.7 171 728-904 18-188 (576)
455 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 3.3E-08 7.2E-13 122.1 25.7 127 774-903 178-304 (686)
456 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 3.3E-08 7.1E-13 122.6 25.4 125 774-901 196-320 (710)
457 PRK13657 cyclic beta-1,2-gluca 99.0 5.7E-08 1.2E-12 117.9 25.9 179 715-902 6-184 (588)
458 PRK00409 recombination and DNA 99.0 8.5E-10 1.8E-14 136.0 9.9 80 442-523 386-468 (782)
459 PRK10789 putative multidrug tr 99.0 3E-08 6.5E-13 119.8 22.4 128 773-902 37-165 (569)
460 cd01124 KaiC KaiC is a circadi 99.0 3.1E-09 6.7E-14 109.1 11.4 85 435-519 60-164 (187)
461 COG1132 MdlB ABC-type multidru 99.0 9.7E-08 2.1E-12 115.4 25.7 160 729-896 15-174 (567)
462 PRK11176 lipid transporter ATP 99.0 9.6E-08 2.1E-12 115.8 25.5 126 777-904 70-195 (582)
463 TIGR03375 type_I_sec_LssB type 99.0 1.1E-07 2.5E-12 117.5 26.3 124 776-903 191-314 (694)
464 PRK01156 chromosome segregatio 98.9 1.9E-09 4.1E-14 136.9 10.3 76 443-518 798-883 (895)
465 TIGR00618 sbcc exonuclease Sbc 98.9 2E-09 4.4E-14 138.2 10.0 78 443-520 947-1036(1042)
466 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.8E-10 1.5E-14 126.2 4.8 67 325-394 20-87 (504)
467 PRK03918 chromosome segregatio 98.9 2.2E-09 4.9E-14 136.2 9.6 75 445-519 787-868 (880)
468 TIGR00954 3a01203 Peroxysomal 98.9 3.4E-08 7.4E-13 120.9 19.2 188 716-907 79-272 (659)
469 COG2274 SunT ABC-type bacterio 98.9 2.4E-07 5.2E-12 112.7 24.5 128 774-904 196-323 (709)
470 PRK06793 fliI flagellum-specif 98.9 7.2E-09 1.6E-13 118.4 10.3 168 309-528 131-306 (432)
471 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.4E-08 3.1E-13 106.8 11.7 138 323-510 16-158 (218)
472 PRK13830 conjugal transfer pro 98.9 1.8E-08 3.9E-13 125.7 14.2 67 461-527 649-727 (818)
473 PF13304 AAA_21: AAA domain; P 98.8 1.5E-08 3.3E-13 107.6 11.5 64 445-508 235-302 (303)
474 TIGR02168 SMC_prok_B chromosom 98.8 3.6E-09 7.9E-14 138.3 7.5 76 443-518 1086-1165(1179)
475 PRK10733 hflB ATP-dependent me 98.8 8.5E-10 1.8E-14 133.9 1.1 168 162-362 35-210 (644)
476 cd01120 RecA-like_NTPases RecA 98.8 3.2E-08 6.9E-13 98.3 11.1 128 339-507 1-139 (165)
477 cd01131 PilT Pilus retraction 98.8 1E-08 2.2E-13 106.7 7.5 119 339-518 3-122 (198)
478 smart00382 AAA ATPases associa 98.8 3.3E-07 7.1E-12 87.8 16.8 117 336-504 1-125 (148)
479 TIGR02169 SMC_prok_A chromosom 98.7 1.2E-08 2.6E-13 133.5 8.1 75 445-519 1073-1151(1164)
480 TIGR00767 rho transcription te 98.7 2.9E-08 6.2E-13 111.5 9.4 82 277-364 103-195 (415)
481 PRK00300 gmk guanylate kinase; 98.7 3.5E-08 7.7E-13 103.0 8.1 65 335-404 3-79 (205)
482 PRK10246 exonuclease subunit S 98.7 3.9E-08 8.5E-13 125.9 9.9 78 442-519 945-1032(1047)
483 PRK06067 flagellar accessory p 98.6 2.9E-07 6.2E-12 98.4 12.7 62 446-507 100-167 (234)
484 PRK02224 chromosome segregatio 98.6 6.4E-08 1.4E-12 123.0 8.4 76 445-520 780-869 (880)
485 COG3910 Predicted ATPase [Gene 98.6 6.5E-07 1.4E-11 89.2 12.7 83 446-530 129-213 (233)
486 TIGR01842 type_I_sec_PrtD type 98.5 1.5E-05 3.2E-10 96.1 24.0 119 774-900 48-167 (544)
487 PRK06002 fliI flagellum-specif 98.5 2E-07 4.4E-12 106.7 7.6 85 307-394 138-229 (450)
488 PRK06995 flhF flagellar biosyn 98.4 2.4E-07 5.3E-12 107.4 6.1 62 327-407 246-307 (484)
489 PRK11098 microcin B17 transpor 98.4 0.00078 1.7E-08 77.0 33.9 191 91-290 191-395 (409)
490 TIGR02655 circ_KaiC circadian 98.4 8.2E-08 1.8E-12 113.3 0.8 156 333-518 17-190 (484)
491 cd01130 VirB11-like_ATPase Typ 98.4 5.9E-07 1.3E-11 92.5 6.9 79 326-407 14-95 (186)
492 PRK07196 fliI flagellum-specif 98.4 2.7E-07 5.9E-12 105.7 4.6 82 324-406 143-234 (434)
493 PRK12369 putative transporter; 98.3 0.0019 4.1E-08 72.3 33.4 231 45-290 78-321 (326)
494 PRK13891 conjugal transfer pro 98.3 9.5E-06 2.1E-10 102.0 16.8 54 457-510 680-735 (852)
495 TIGR01420 pilT_fam pilus retra 98.3 1.7E-06 3.8E-11 97.7 9.3 123 334-517 119-242 (343)
496 PRK01889 GTPase RsgA; Reviewed 98.3 3.5E-07 7.7E-12 103.6 3.5 81 326-409 184-264 (356)
497 COG4988 CydD ABC-type transpor 98.3 9.2E-05 2E-09 86.1 23.1 162 735-902 7-168 (559)
498 PF09818 ABC_ATPase: Predicted 98.3 4.3E-06 9.3E-11 94.3 11.9 170 314-521 227-415 (448)
499 TIGR01026 fliI_yscN ATPase Fli 98.3 6.1E-06 1.3E-10 95.4 13.5 177 323-530 150-345 (440)
500 cd01125 repA Hexameric Replica 98.3 1.5E-06 3.2E-11 93.3 7.8 44 461-505 108-159 (239)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-132 Score=1195.87 Aligned_cols=775 Identities=49% Similarity=0.823 Sum_probs=690.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHH
Q 002434 27 VWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALS 106 (922)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~ 106 (922)
..+.++++++++++++.++.+|++..||.+.++|+..++|+++++++|+++++|||. +.+|++.+|+++|++.+++.++
T Consensus 68 ~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-~~~g~~~~~l~~d~~~I~d~~g 146 (1228)
T KOG0055|consen 68 SEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDT-NSTGELVTRLSDDIELIQDAIG 146 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeec-ccccceEEEecCcHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999 5779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 002434 107 EKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF 186 (922)
Q Consensus 107 ~~~~~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~ 186 (922)
++++.+++.+.+++++++++|+..|+|+++++.+.|++++.+..+.+.+.+...+.+..++++.++++|+++++|||.+|
T Consensus 147 eKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af 226 (1228)
T KOG0055|consen 147 EKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAF 226 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Q 002434 187 TNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQ 266 (922)
Q Consensus 187 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~ 266 (922)
+.|+.+.++|.+.++...+...+...+.++..++..++.+..+++.+|+|+.++..+..++|.+++++++++.....+.+
T Consensus 227 ~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgq 306 (1228)
T KOG0055|consen 227 NGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQ 306 (1228)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeC
Q 002434 267 AATNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVG 344 (922)
Q Consensus 267 l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG 344 (922)
..+.+..+.++++|+.+|++.++..++.+.. .+.......|+|+|+||+|+||+|++.++|+|+||+|++|+++||||
T Consensus 307 a~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 307 ASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred cccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEEC
Confidence 9999999999999999999999987654332 22333456789999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHH
Q 002434 345 RNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIA 423 (922)
Q Consensus 345 ~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~ 423 (922)
||||||||++++|.|||+|++|+|++||.|+++++.+|+|++||.|+|+|.||++||+|||.||+ +++.+++.+|+|.+
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 002434 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR 503 (922)
Q Consensus 424 ~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 503 (922)
++++||..||+||||.+||+|.+|||||||||||||||++||+||||||||||||+++|+.++++|++..+|||+|+|||
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCc
Q 002434 504 RLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSP 583 (922)
Q Consensus 504 ~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (922)
||+++++||+|+||++|+|+|.|+|+||++.+|.|.++++.|+.....+.. +.+ .+..... ..+
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~---~~~--------~~~~~~~----~~s- 610 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDE---EEE--------ESLKEER----SRS- 610 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhcc---ccc--------cchhhhh----hhc-
Confidence 999999999999999999999999999999999999999998654321100 000 0000000 000
Q ss_pred cccCCCccccccccCCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCC
Q 002434 584 KMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSN 663 (922)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (922)
. + .+ . ......+
T Consensus 611 --------------------~------~---~s-------------~-~~~~~~~------------------------- 622 (1228)
T KOG0055|consen 611 --------------------L------K---SS-------------S-SSPSLSR------------------------- 622 (1228)
T ss_pred --------------------c------c---cc-------------c-ccccccC-------------------------
Confidence 0 0 00 0 0000000
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccCCCCCCCCCCCcchhhhhhhcCCcchHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 002434 664 GSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSF 743 (922)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~ 743 (922)
.. . . ..... .+. +.++... ... ......++++++++++|+|+++++|++++++.|+.
T Consensus 623 ----~~--~-----~---~~~~~---~~~-~~e~~~~-~~~----~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~ 679 (1228)
T KOG0055|consen 623 ----GS--N-----R---SNLLS---VKP-EGEDPEE-PVS----EEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGAT 679 (1228)
T ss_pred ----Cc--c-----c---ccccc---ccc-ccccccc-ccc----cccccccHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 00 0 0 00000 000 0000000 000 01145689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 002434 744 NPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWF 823 (922)
Q Consensus 744 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfF 823 (922)
+|+|+++++++++.|+.+++ +.+.+....|+++|+++|++++++.++++|+|+++||++++|+|.+||++++|||++||
T Consensus 680 ~P~fa~~~s~~~~~f~~~~~-~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wF 758 (1228)
T KOG0055|consen 680 YPLFAYVFSQVLEAFYPPDD-DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWF 758 (1228)
T ss_pred HHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999987663 34555556699999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 824 DEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 824 D~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
|+|+|+ |+|.+||++|+.+|+.+++++++.+++++++++++++|+|+++|+++|+++++.|+++++++.+.+.+++++.
T Consensus 759 D~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~ 837 (1228)
T KOG0055|consen 759 DDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSK 837 (1228)
T ss_pred CCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHhhhhh
Q 002434 904 AILCNFTK 911 (922)
Q Consensus 904 ~~~~~~~~ 911 (922)
+.++++.+
T Consensus 838 ~~~~~~~e 845 (1228)
T KOG0055|consen 838 DDKKAYEE 845 (1228)
T ss_pred HHHHHHHH
Confidence 77775543
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-107 Score=934.43 Aligned_cols=518 Identities=38% Similarity=0.586 Sum_probs=496.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 002434 28 WLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107 (922)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~ 107 (922)
.+...++.+.++.++..++++++.+++..+++++..+||.++|+++++|+++|||+ +.+||+++|+++|+..+.+.++.
T Consensus 186 ~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~ 264 (716)
T KOG0058|consen 186 ALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQ 264 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHH
Confidence 34456677777777788899999999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 002434 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT 187 (922)
Q Consensus 108 ~~~~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~ 187 (922)
.+...+.+.+..++++++||++||+|++++++.+|+++++..+++++.++..++.|++.+++++..+|.++++||||+|+
T Consensus 265 nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa 344 (716)
T KOG0058|consen 265 NLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFA 344 (716)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Q 002434 188 NETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267 (922)
Q Consensus 188 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l 267 (922)
.|..+.+||.+..++..+...|.....+...+...+...+..+.++++|++++..|+++.|.+.+|++|......++..+
T Consensus 345 ~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~l 424 (716)
T KOG0058|consen 345 AEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGL 424 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCC
Q 002434 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN 346 (922)
Q Consensus 268 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~s 346 (922)
...+..++++..|.+|++|++|++|..+.. |...| ...|.|+|+||+|+||.|++.+||+|+||+|+|||+||+||||
T Consensus 425 s~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPS 503 (716)
T KOG0058|consen 425 SSFYSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPS 503 (716)
T ss_pred HHHHHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCC
Confidence 999999999999999999999998875544 54333 4789999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHH
Q 002434 347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425 (922)
Q Consensus 347 GsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l 425 (922)
|+||||++++|.+||+|++|+|.+||+||+++++.+||++||+|.|||.||++||+|||.||. ++++|++.+|++.|++
T Consensus 504 GsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANa 583 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANA 583 (716)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred HHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 426 ~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
|+||.++|+||||.|||+|.+|||||||||||||||++||.||||||||||||+++|..|+++|.+..+++|||+|+|||
T Consensus 584 h~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCEEEEEeCCeEEEecCHHHHhhcC-cHHHHHHHhHHh
Q 002434 506 SLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEEA 547 (922)
Q Consensus 506 ~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~-~~~~~l~~~~~~ 547 (922)
+|+++||+|+|+++|+|+|.|+|+||+++. |.|+++++.|..
T Consensus 664 STV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 664 STVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred hHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcc
Confidence 999999999999999999999999999986 899999988754
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-102 Score=934.34 Aligned_cols=516 Identities=41% Similarity=0.669 Sum_probs=497.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (922)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~ 110 (922)
.|+++++++|+..++..+++.+++...++++..|+|..+|+++++++.+|||..+++|.+.+|+.+|...++..+++.+.
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999998767799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 111 ~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.+++++..++++++++|+++|+++++++++.|++++..+...+++.....+..+.++++++.+.|++++||||++|+.|+
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~ 270 (922)
++.+.|.+..++..+...+.+.+.++..++.+.+.++.+++.+|+|++++.+|.++..+++.++..+.+....+.+....
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~ 947 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSY 947 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCC
Q 002434 271 FYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (922)
Q Consensus 271 ~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 348 (922)
.+++.+|+.|+.++++++++++..+.. .+...+..+|+|+++||+|+||.||+.+||+|+||+|++|+++||||||||
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGs 1027 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGS 1027 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCC
Confidence 999999999999999999998744332 333345678999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHH
Q 002434 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (922)
Q Consensus 349 GKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~ 427 (922)
||||++.||.|+|+|++|.|.|||+|++++++++||++||.|+|||.||++||||||.||. +++++|+.+|++.|++|+
T Consensus 1028 GKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1028 GKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 689999999999999999
Q ss_pred hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcch
Q 002434 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 428 ~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 507 (922)
||.+||+||||.|||+|.+||||||||||||||++|||+||||||+|||||.++|+.++++|++.+.|||+|+|||||++
T Consensus 1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187 (1228)
T ss_pred HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 508 ~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
+++||.|+|+++|+|+|+|||+||++++|.|.+|++.|.
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999999998764
No 4
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-97 Score=957.96 Aligned_cols=774 Identities=26% Similarity=0.420 Sum_probs=626.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (922)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~ 110 (922)
.+++++++++++.+++.+++.+++.++++++..++|.++|++++++|++|||+ .++|++++|+++|++.+++.+...+.
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~~l~s~l~~d~~~i~~~i~~~~~ 176 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGSKLTSDLDFYLEQVNAGIGTKFI 176 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999998 58899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 111 ~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.++..++.++++++++|+++|+|++++++++|+++++..++.+++++..++.++..++..+.+.|+++|+++||+|+.|+
T Consensus 177 ~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 256 (1466)
T PTZ00265 177 TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEK 256 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCH
Confidence 99999999999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CccHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHN--------KAHGGEIVTALFAVILSGL 262 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g--------~lt~g~l~~~~~~~~~~~~ 262 (922)
.+.++|.+......+...+.....++..++..++..+.+++++|+|++++.+| .+++|.+++++++.+....
T Consensus 257 ~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~ 336 (1466)
T PTZ00265 257 TILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMF 336 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888889999999999999986 5788988887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEE
Q 002434 263 GLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNY-DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVA 341 (922)
Q Consensus 263 ~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~va 341 (922)
.+..+...+..+++++.|++|++++++.+++.+.. .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|
T Consensus 337 ~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 337 MLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 66777788889999999999999999876543221 1122222 247999999999986555679999999999999999
Q ss_pred EeCCCCCcHHHHHHHHhcCCCCCCcEEEE-CCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-----------
Q 002434 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLL-DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR----------- 409 (922)
Q Consensus 342 ivG~sGsGKSTl~~ll~g~~~~~~G~I~i-~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~----------- 409 (922)
||||||||||||+++|+|+|+|++|+|++ ||+|+++++.+++|++|+||+|+|.||++||+|||.+|.
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 99999999999999999999999999999 579999999999999999999999999999999999973
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcC
Q 002434 410 -----------------------------------------------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442 (922)
Q Consensus 410 -----------------------------------------------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge 442 (922)
++++++++++++.+++++++..||+||||.+|+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 245688999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
+|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999885 489999999999999999999999986
Q ss_pred -----------------------------------------------eEEEecCHHHHhh-cCcHHHHHHHhHHhhccCC
Q 002434 521 -----------------------------------------------RLFEMGTHDELLA-TGDLYAELLKCEEAAKLPR 552 (922)
Q Consensus 521 -----------------------------------------------~i~~~G~~~eL~~-~~~~~~~l~~~~~~~~~~~ 552 (922)
+|+|+|+|+||++ .+|.|+.+++.|.......
T Consensus 656 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~ 735 (1466)
T PTZ00265 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKS 735 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccc
Confidence 5999999999998 6999999997764321000
Q ss_pred CCCcccccccccchhccCccCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCC
Q 002434 553 RMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADK 632 (922)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (922)
.. .... ...... .+.. . +.... ....+ ..
T Consensus 736 ~~---~~~~-------~~~~~~------~~~~----------------~------~~~~~-~~~~~--------~~---- 764 (1466)
T PTZ00265 736 SN---NDND-------KDSDMK------SSAY----------------K------DSERG-YDPDE--------MN---- 764 (1466)
T ss_pred cc---cccc-------cccccc------cccc----------------c------ccccc-ccccc--------cc----
Confidence 00 0000 000000 0000 0 00000 00000 00
Q ss_pred CccccccccccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccCcccCCCCCCCCCCCcchhhhh-hhcC
Q 002434 633 EPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEE-SKHQ 711 (922)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 711 (922)
.....+..+ . . ........ .+. ..+.++..+....++. +...
T Consensus 765 ~~~~~~~~~------------~------~---~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~ 807 (1466)
T PTZ00265 765 GNSKHENES------------A------S---NKKSCKMS--------DEN--------ASENNAGGKLPFLRNLFKRKP 807 (1466)
T ss_pred ccccccccc------------c------c---cccccccc--------ccc--------ccchhccccchhhhhcccccc
Confidence 000000000 0 0 00000000 000 0000000000000000 0001
Q ss_pred Ccc-hHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHH
Q 002434 712 KAP-SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANF 790 (922)
Q Consensus 712 ~~~-~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~ 790 (922)
+.. .++++++..++.+..++++++++++.|+++|+++++++.++..++.. .........|++++++++++.+++.+
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 808 KAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF---ANLEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 33444444444445577788999999999999999999999987642 22344566799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002434 791 LQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGM 870 (922)
Q Consensus 791 ~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~ 870 (922)
++.+++.++++++..++|.++|++++++|++|||+++|++|++++|+++|++.++..++..+..+++.++++++++++++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~ 964 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF 964 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 871 LLEWRLALVALATLPILSLSAIAQVCT 897 (922)
Q Consensus 871 ~~~w~l~lv~l~~~Pi~~~~~~~~~~~ 897 (922)
+++|++++++++++|++......+.+.
T Consensus 965 ~~~~~l~l~~~~~~~~~~~~~~~~~~~ 991 (1466)
T PTZ00265 965 YFCPIVAAVLTGTYFIFMRVFAIRARL 991 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777776665554443
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.4e-94 Score=857.71 Aligned_cols=527 Identities=32% Similarity=0.480 Sum_probs=492.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHH
Q 002434 15 FVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQV 94 (922)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl 94 (922)
++|.+++..... ++..+++.++++++...++.+++.+...+++.|+..++-.++|+|++++|++||++ +++|++++|+
T Consensus 180 viD~Vl~~~~~~-tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r~~Ge~~sR~ 257 (709)
T COG2274 180 VIDKVLPDASRS-TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRV 257 (709)
T ss_pred HHHhhhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-CChhhHHHHH
Confidence 344444433322 23445566677777788889999999999999999999999999999999999998 5999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 95 LSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAE 174 (922)
Q Consensus 95 ~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (922)
+|.+.|+++++..+...+.+++.+++.+++|++++|+|++++++.+|++++...++.+.+++..++..+..++.++.+.
T Consensus 258 -~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lv 336 (709)
T COG2274 258 -RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV 336 (709)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 002434 175 QAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTAL 254 (922)
Q Consensus 175 e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~ 254 (922)
|++.|+++||+.+.|..+..+|++...+..+...+......+...+..++..+..++++|+|+++|.+|++|+|.++++.
T Consensus 337 E~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~ 416 (709)
T COG2274 337 ETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFN 416 (709)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEE
Q 002434 255 FAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLT 333 (922)
Q Consensus 255 ~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~ 333 (922)
.....+..|+..+...+.++++++.+.+|+.++++.++|.+.+.. ...++..|+|+|+||+|+|+.+ ++++|+|+||+
T Consensus 417 ~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~ 495 (709)
T COG2274 417 MLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLE 495 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEE
Confidence 888888889999999999999999999999999999877544332 3445678999999999999754 35799999999
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DAT 412 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~ 412 (922)
|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++++++.++|++||||+||+.||+|||+|||++++ +++
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002434 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (922)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 492 (922)
+|++.+||+.+++|+||.++|.||||+|||+|.+|||||||||+||||+++||+||||||||||||+++|+.|.+.|.++
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 493 MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 493 ~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
.+++|+|+||||++++++||||+||++|+|+++|+|+||++.+|.|++++..|
T Consensus 656 ~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 656 LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred hcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998765
No 6
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-90 Score=849.34 Aligned_cols=702 Identities=19% Similarity=0.240 Sum_probs=533.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002434 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (922)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~l~ 134 (922)
.+.|.++...+-..+|+|.++++-.-=.. .+.|+++|-++.|++.+++.. .+++.++.....++++.++.|.+.
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~lLy~~L 340 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYLLYGLL 340 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666677778889999988776545 478999999999999998865 577778888877777777777666
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 002434 135 LITLCTGPFIVAAGG----ISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (922)
Q Consensus 135 lv~l~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~ 210 (922)
.+..+.+.+++++.. ++.++.++...+..+..+++.+...|.++|||+||.|+||+.+.++..+..++..+.-.+.
T Consensus 341 G~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 341 GPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444 4445555566666677788889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002434 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 290 (922)
....++...+..+.+.++.++.|....+ ...+.+++...++++.++.....|+..++..+..+.++.++.+|+.+++..
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~tF~~~v~-~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~ 499 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVVTFVVFVL-LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLS 499 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888887777666666655554433222 456678888889888888899999999999999999999999999999987
Q ss_pred CCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE
Q 002434 291 SSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (922)
Q Consensus 291 ~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~ 369 (922)
++....... .+..+.+..|+++|.+|+|++....+.|+||||+|++|+.+||||+.|||||||+.+|+|.++..+|+|.
T Consensus 500 ~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~ 579 (1381)
T KOG0054|consen 500 EELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA 579 (1381)
T ss_pred cccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE
Confidence 654322111 1222334469999999999864455699999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH
Q 002434 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 370 i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG 449 (922)
++| .++||||+||+|+|||||||.||.+++++++++++++|+|+.+++.||.|+.|+|||+|.+|||
T Consensus 580 v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 580 VNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred EcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCH
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~ 528 (922)
||||||+||||+|+|+||++||+|.||+|+++.+++ .++|+...++||+|+|||+++.+++||+|++|+||+|.++|+|
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 999999999999999999999999999999977776 6788888899999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccCCCccccccccCCCCCCCCCCC
Q 002434 529 DELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQE 608 (922)
Q Consensus 529 ~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (922)
+||++.++.|.++..........+ +.. +.. +
T Consensus 727 ~el~~~~~~~~~l~~~~~~~~~~~------------------~~~------~~~-------------------------~ 757 (1381)
T KOG0054|consen 727 EELLKSGGDFAELAHEEESEQEEE------------------ASE------KDL-------------------------E 757 (1381)
T ss_pred HHHHhcchhHHHHhhccchhhccc------------------ccc------ccc-------------------------c
Confidence 999998888888743222110000 000 000 0
Q ss_pred CCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccCcc
Q 002434 609 SPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQT 688 (922)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (922)
.+ ....+.+ . +.. ... + ...+.
T Consensus 758 ~~-~~~~~~~-----------~--~~~-~~~-----------------------------~-----------~~~~~--- 779 (1381)
T KOG0054|consen 758 SG-ESSRESE-----------S--RSL-ESL-----------------------------S-----------SEEEK--- 779 (1381)
T ss_pred cc-ccccchh-----------h--hhh-hhh-----------------------------c-----------ccccc---
Confidence 00 0000000 0 000 000 0 00000
Q ss_pred cCCCCCCCCCCCcchhhhhhhcC---CcchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcch
Q 002434 689 FSRPHSHSDDFPTKVREEESKHQ---KAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERH 765 (922)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~ 765 (922)
. ..++..+.+..+++++.. +...|+.|++.... +....+.+++.+.. .....++.+|-++|.+....
T Consensus 780 -~---~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g-~~~~~~~~~~~v~~-----~~~~~~~~~WLs~W~~~~~~ 849 (1381)
T KOG0054|consen 780 -S---KDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGG-FLLVLLILLLFVLT-----QVLQIASNYWLSYWTDDGED 849 (1381)
T ss_pred -c---ccccchhhHHHHHHHHhcCEeeHHHHHHHHHhccc-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCccc
Confidence 0 000000111112222233 33456666554222 11111111222222 23333444444555543111
Q ss_pred hHH--HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHH
Q 002434 766 HLR--EEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATF 843 (922)
Q Consensus 766 ~~~--~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~ 843 (922)
... .+...|.++|.++|+++.++.+++.+.+..+|.+++++||++||++|+|+||+||| +||+|||+||||||++.
T Consensus 850 ~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~ 927 (1381)
T KOG0054|consen 850 NGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDT 927 (1381)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHH
Confidence 111 34567889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 844 VRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTV 898 (922)
Q Consensus 844 v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~ 898 (922)
+|..+|..+..+++++.++++.+++..++.|.+.++ ++|+.++..+++....
T Consensus 928 vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~---~~pl~v~~~~~~~~Y~ 979 (1381)
T KOG0054|consen 928 VDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA---IIPLGVIYYFVQRYYL 979 (1381)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999966555 5555555555554443
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.7e-86 Score=857.82 Aligned_cols=681 Identities=17% Similarity=0.225 Sum_probs=504.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002434 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (922)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~l~ 134 (922)
..++.++...++..+|+|+++++..++++ .++|++++++++|++.+++.+ ..+..++...+.+++++++++. .++
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~---~lg 440 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQ---QLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 46778888889999999999999999998 589999999999999999987 3444444444444444443332 233
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 002434 135 LITLCT---GPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (922)
Q Consensus 135 lv~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (922)
+++++. +.+++.+..++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..
T Consensus 441 ~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~ 520 (1622)
T PLN03130 441 VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 22223333445666777777788888999999999999999999999999999999988887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002434 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (922)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 291 (922)
....+...+...... .+.++++|++++.+|.+++|.+++++.++.....|+..++..+..+.+++++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 521 LLSAFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 555544433322221 344566788999999999999999888888888899999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC-cEEEE
Q 002434 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLL 370 (922)
Q Consensus 292 ~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~-G~I~i 370 (922)
+.....+ .......+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 599 e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 599 ERVLLPN-PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccccC-CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 4321111 111112346999999999975445689999999999999999999999999999999999999999 99985
Q ss_pred CCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 371 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 371 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
. ++|+||+|+||||++||||||.||+++++++++++++.|+++++++.||+|++|.|||+|.+||||
T Consensus 678 ~-------------~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 R-------------GTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred c-------------CeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~ 529 (922)
|||||+||||+|++|+||||||||||||+++++++ .++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999877 46777777899999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCC
Q 002434 530 ELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQES 609 (922)
Q Consensus 530 eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (922)
||+++++.|+++++.+....... + .... .. . . ...
T Consensus 825 eL~~~~~~~~~l~~~~~~~~~~~--------~--------~~~~------~~-------------------~---~-~~~ 859 (1622)
T PLN03130 825 ELSNNGPLFQKLMENAGKMEEYV--------E--------ENGE------EE-------------------D---D-QTS 859 (1622)
T ss_pred HHHhcchhHHHHHHhcccccccc--------c--------cccc------cc-------------------c---c-ccc
Confidence 99998899988875432110000 0 0000 00 0 0 000
Q ss_pred CCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccCccc
Q 002434 610 PKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTF 689 (922)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (922)
.. +. . . ... . ...+ . . ...
T Consensus 860 ~~---~~-~-----------~-~~~------~----------------------------~~~~-~-~---~~~------ 878 (1622)
T PLN03130 860 SK---PV-A-----------N-GNA------N----------------------------NLKK-D-S---SSK------ 878 (1622)
T ss_pred cc---cc-c-----------c-ccc------c----------------------------cccc-c-c---ccc------
Confidence 00 00 0 0 000 0 0000 0 0 000
Q ss_pred CCCCCCCCCCCcchhhhhhhcCC---cchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchh
Q 002434 690 SRPHSHSDDFPTKVREEESKHQK---APSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHH 766 (922)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~ 766 (922)
+. . ++.. ....+++++..+ ...|+.|++..... +.+.+.+++.++.. .+.. ++.++..+|.... ..
T Consensus 879 ~~--~-~~~~-~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~-~~~~~~~~~~~~~~----~~~~-~~~~wl~~w~~~~-~~ 947 (1622)
T PLN03130 879 KK--S-KEGK-SVLIKQEERETGVVSWKVLERYKNALGGA-WVVMILFLCYVLTE----VFRV-SSSTWLSEWTDQG-TP 947 (1622)
T ss_pred cc--c-cccc-hhhhhHHHHhcCccCHHHHHHHHHHhccH-HHHHHHHHHHHHHH----HHHH-HHHHHHHHHHhcc-cc
Confidence 00 0 0000 001111122223 33455554432211 11111112222211 1222 2222222332210 11
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHH
Q 002434 767 LREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRA 846 (922)
Q Consensus 767 ~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~ 846 (922)
..+....|.++|++++++.+++.+++.+++.+++.++++++|+++|++++++|++||| +||+|+|+|||++|++.+|.
T Consensus 948 ~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~ 1025 (1622)
T PLN03130 948 KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDR 1025 (1622)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHH
Confidence 1122456788899999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 847 AFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (922)
Q Consensus 847 ~~~~~l~~~i~~~~~i~~~iiv~~~~~w~ 875 (922)
.++..+..++..++.+++++++.++++|.
T Consensus 1026 ~l~~~~~~~~~~~~~~i~~~i~i~~~~~~ 1054 (1622)
T PLN03130 1026 NVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888873
No 8
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-86 Score=859.29 Aligned_cols=679 Identities=16% Similarity=0.201 Sum_probs=504.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002434 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (922)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~l~ 134 (922)
.+.+.++...++..+|+|+++++..++++ .++|++++++++|++.+++.. ..+..++...+.+++++++ +.+.++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~---l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVL---LYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 56778888888889999999999999998 589999999999999999875 3333343333333333322 223344
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 002434 135 LITLCTGPFIV---AAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (922)
Q Consensus 135 lv~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (922)
+.+++.+++++ .+..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333222222 123455677777888888889999999999999999999999999999999998888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002434 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (922)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 291 (922)
...++...+..... ..+.++++|++++.+|.+++|.+++++.++.....|+..++..+..+.+++++.+|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 65554433322222 2233467788999999999999999988888888899999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 002434 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371 (922)
Q Consensus 292 ~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~ 371 (922)
++..... .......+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.
T Consensus 599 ~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 599 ERILAQN-PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred ccccccc-CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 4322111 1111223469999999999754456899999999999999999999999999999999999999998763
Q ss_pred CEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 372 GENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 372 g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
++|++|+||+|+||||++||||||.||+++++++++++++.|+++++++.||+|++|.|||+|.+|||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~e 530 (922)
||||+||||++++|+||||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+|
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999885 45776778999999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCC
Q 002434 531 LLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESP 610 (922)
Q Consensus 531 L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (922)
|+++++.|+++++.+...... .+ ..+. .. . ..+
T Consensus 826 L~~~~~~~~~l~~~~~~~~~~--------~~-------~~~~--------~~------------------~------~~~ 858 (1495)
T PLN03232 826 LSKSGSLFKKLMENAGKMDAT--------QE-------VNTN--------DE------------------N------ILK 858 (1495)
T ss_pred HHhcchhHHHHHHhccccccc--------cc-------cccc--------cc------------------c------ccc
Confidence 999999998887654311000 00 0000 00 0 000
Q ss_pred CCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccCcccC
Q 002434 611 KVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFS 690 (922)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (922)
. .... .. .. .. .... . .
T Consensus 859 ~--~~~~---------------~~------~~----------------------~~--~~~~--------~--------~ 875 (1495)
T PLN03232 859 L--GPTV---------------TI------DV----------------------SE--RNLG--------S--------T 875 (1495)
T ss_pred c--cccc---------------cc------cc----------------------cc--cccc--------c--------c
Confidence 0 0000 00 00 00 0000 0 0
Q ss_pred CCCCCCCCCCcchhhhhhhcCC---cchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhH
Q 002434 691 RPHSHSDDFPTKVREEESKHQK---APSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHL 767 (922)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~ 767 (922)
.+ .+.. +....+++++..+ ...|++|++.... ++.+.+.+++.++.. ++.. ++.++-.+|.+.... .
T Consensus 876 ~~--~~~~-~~~~~~~e~~~~g~v~~~vy~~y~~~~~~-~~~~~~~~~~~~~~~----~~~~-~~~~wl~~w~~~~~~-~ 945 (1495)
T PLN03232 876 KQ--GKRG-RSVLVKQEERETGIISWNVLMRYNKAVGG-LWVVMILLVCYLTTE----VLRV-SSSTWLSIWTDQSTP-K 945 (1495)
T ss_pred cc--cccc-hhhhhhHHHHhcCcccHHHHHHHHHHcCc-HHHHHHHHHHHHHHH----HHHH-HHHHHHHHHhcccCC-C
Confidence 00 0000 0001111112222 3344555443222 122121222222211 1222 233333334332110 0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHH
Q 002434 768 REEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAA 847 (922)
Q Consensus 768 ~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~ 847 (922)
......|..+|++++++..++.+++.+++.+++.++++++|+++|++++++|++||| +||+|+|+|||++|++.+|..
T Consensus 946 ~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~ 1023 (1495)
T PLN03232 946 SYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRN 1023 (1495)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHH
Confidence 122456888999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 848 FSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (922)
Q Consensus 848 ~~~~l~~~i~~~~~i~~~iiv~~~~~w~ 875 (922)
++..+..++..++.+++++++.+++.|.
T Consensus 1024 l~~~~~~~~~~~~~~i~~~i~~~~~~~~ 1051 (1495)
T PLN03232 1024 VANLMNMFMNQLWQLLSTFALIGTVSTI 1051 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888887777763
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-87 Score=806.81 Aligned_cols=506 Identities=22% Similarity=0.240 Sum_probs=442.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
+++.++..++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~ 148 (588)
T PRK11174 70 ILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAV 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555677788888889999999999999999999999999998 68999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++.++++++++|++++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|
T Consensus 149 ~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 228 (588)
T PRK11174 149 LVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESI 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHH
Confidence 88898999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHH---------HHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI---------VTALFAVILSGLGLNQA 267 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l---------~~~~~~~~~~~~~l~~l 267 (922)
.+..++..+...+..........+...+..+..+++++++++.+ .|.++.|.+ ++++.+......|+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l 307 (588)
T PRK11174 229 RSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDL 307 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHH
Confidence 99988888877776666555555555544444444445555544 377887764 11112222345688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCC
Q 002434 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN 346 (922)
Q Consensus 268 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~s 346 (922)
...+..+.+++.+++|+.++++.+++.........+ ...+.|+|+||+|.|++ ++++|+|+||+|+||+++||||||
T Consensus 308 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~S 385 (588)
T PRK11174 308 GTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPS 385 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCC
Confidence 888999999999999999999876432211111111 12356999999987753 457999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHH
Q 002434 347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425 (922)
Q Consensus 347 GsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l 425 (922)
|||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||++|+ ++++++++++++.|++
T Consensus 386 GsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l 464 (588)
T PRK11174 386 GAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV 464 (588)
T ss_pred CCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCH
Confidence 999999999999999 99999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred HHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 426 ~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
+++|.++|+||||.|||+|.+|||||||||+||||+++||+|||||||||+||+++++.|++.|+++.+++|+|+||||+
T Consensus 465 ~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 465 SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred chhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 506 ~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
++++.||+|++|++|+|+|+|+|+||+++++.|+++++.|.+
T Consensus 545 ~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 999999999999999999999999999999999999987753
No 10
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-86 Score=797.19 Aligned_cols=510 Identities=35% Similarity=0.513 Sum_probs=467.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (922)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~ 112 (922)
..+++++.++..++.++..++..+.+.+...++|++++++++++|+++|++ .++|++++|+++|++.+++.+......+
T Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~ 133 (567)
T COG1132 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLV 133 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHH
Confidence 334444455566677777888888889999999999999999999999999 5899999999999999999998875556
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 002434 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (922)
Q Consensus 113 i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~ 192 (922)
...++.+++.+++++..+|.+++++++..|++.++...+.++.++...+.++..++.++.+.|.++|++++|+|+.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~ 213 (567)
T COG1132 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRE 213 (567)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHH
Confidence 65788888999999999999999999999999888888887778888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 272 (922)
.+++.+..+...+...+.....+...++...+..+..++++++|++++..+.+++|.+++++.+......|+..+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 293 (567)
T COG1132 214 LKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888777777777788888888889999999999999999999999999888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 273 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
.++.+..+++|++++++.+++..+.... .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||
T Consensus 294 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 294 LLQRASAAAERLFELLDEEPEVEDPPDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999999986543222111 2234577999999999963 468999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
++++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||++||+|||.+|+ +++++|+++|++.++++++|.+
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~ 450 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN 450 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhcc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 511 (922)
+|+||||.|||+|.+|||||||||+||||+++||||||||||||+||+++|+.++++++++.++||+|+||||++++++|
T Consensus 451 lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~a 530 (567)
T COG1132 451 LPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530 (567)
T ss_pred CcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 512 D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
|+|+||++|+|+|.|+|+||++++|.|+++++.|.
T Consensus 531 D~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 531 DRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred CEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 99999999999999999999999999999998774
No 11
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.3e-86 Score=855.70 Aligned_cols=512 Identities=28% Similarity=0.469 Sum_probs=451.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCChhHHHHHHHHHHHHHHHHHHHHH
Q 002434 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDT-YGNNGDIVSQVLSDVLLIQSALSEKV 109 (922)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~l~srl~~Di~~i~~~~~~~~ 109 (922)
.+++++++++++.+++.+++.++..++++++..++|.++|++++++|++||++ .+++|++++|+++|++.+++.+...+
T Consensus 867 ~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l 946 (1466)
T PTZ00265 867 KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNI 946 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888899999999999999999999999999999999999984 24789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHH
Q 002434 110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLA-EN-----------------IQDAYAEAAS 171 (922)
Q Consensus 110 ~~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~ 171 (922)
..++..++.++++++++++++|.++++++++.+++ ...+.+..+... .+ .++..++.+.
T Consensus 947 ~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1466)
T PTZ00265 947 VIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSF 1023 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHH
Confidence 99999999999999999999999988766443333 223333222211 11 1233566788
Q ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 002434 172 IAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIV 251 (922)
Q Consensus 172 ~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~ 251 (922)
.++|+++|+++||+|+.|+.+.++|.+..+...+...+.....++..++..++..+..++++|+|++++.+|.+++|.++
T Consensus 1024 ~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~ 1103 (1466)
T PTZ00265 1024 LIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFM 1103 (1466)
T ss_pred HHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999988888888888888888888888888889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCCCC---CCCCcccEEEEeEEEEeCCCCCCCc
Q 002434 252 TALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTT--NYDGNT---LPSVHGNIEFRNVYFSYLSRPEIPI 326 (922)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~--~~~~~~---~~~~~g~i~~~~v~f~y~~~~~~~v 326 (922)
+++.++++...++..+...+..+++++.+++|++++++.+++.+ +..+.. .+...+.|+|+||+|+||++++.++
T Consensus 1104 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1104 KSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 88766665555677888889999999999999999998764321 111111 1234578999999999987666689
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-------------------------------------------
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP------------------------------------------- 363 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~------------------------------------------- 363 (922)
|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999
Q ss_pred -----------CCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 364 -----------TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 364 -----------~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
++|+|++||+|+++++.+++|++|+||+|+|+||++||+|||.||+ +++++++++|++.+++++||.+
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIES 1343 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 6999999999999999999999999999999999999999999997 7999999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR 509 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~ 509 (922)
||+||||.|||+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|++.. +++|+|+||||+++++
T Consensus 1344 LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~ 1423 (1466)
T PTZ00265 1344 LPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423 (1466)
T ss_pred CccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999884 6999999999999999
Q ss_pred ccCEEEEEeC----CeEE-EecCHHHHhh-cCcHHHHHHHhH
Q 002434 510 NADYIAVMDE----GRLF-EMGTHDELLA-TGDLYAELLKCE 545 (922)
Q Consensus 510 ~~D~i~vl~~----G~i~-~~G~~~eL~~-~~~~~~~l~~~~ 545 (922)
.||+|+||++ |+++ |+|+|+||++ ++|.|+++++.|
T Consensus 1424 ~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred hCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999 9955 8999999998 599999998754
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.8e-85 Score=803.25 Aligned_cols=502 Identities=32% Similarity=0.471 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
+++.++..++.+++.+++.+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++.++
T Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~ 286 (711)
T TIGR00958 208 CLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNL 286 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677788888889999999999999999999999999998 69999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++.+++++.++|++++++++..|+.+++...+.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|
T Consensus 287 ~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 287 VMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999998888888888988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+.....+....+...+..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~ 446 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQ 446 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877777666666555555666667778889999999999999999999998888888999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
++.+.+|++++++.+++.+......+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++
T Consensus 447 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 447 AVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999987654322211112234567999999999986556789999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||||||.+|. +.++++++++++.++++++++++|+|
T Consensus 527 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~G 606 (711)
T TIGR00958 527 LQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNG 606 (711)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999997 68899999999999999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
|||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|+
T Consensus 607 ldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~Ii 684 (711)
T TIGR00958 607 YDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQIL 684 (711)
T ss_pred cCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 33457899999999999999999999
Q ss_pred EEeCCeEEEecCHHHHhhcCcHHHHH
Q 002434 516 VMDEGRLFEMGTHDELLATGDLYAEL 541 (922)
Q Consensus 516 vl~~G~i~~~G~~~eL~~~~~~~~~l 541 (922)
+|++|+|+|+|+|+||+++++.|+++
T Consensus 685 vL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 685 VLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEECCEEEEeeCHHHHHhCCCchHhc
Confidence 99999999999999999999999875
No 13
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-85 Score=800.78 Aligned_cols=506 Identities=27% Similarity=0.319 Sum_probs=463.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (922)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i 113 (922)
+.++++.++.+++.+++.+.....+.++..++|.++|+|++++|++||++ .++|++++|++ |++.+++.+...+...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 180 LALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 33444455566778888888899999999999999999999999999998 59999999997 79999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 002434 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (922)
Q Consensus 114 ~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~ 193 (922)
.+++.+++.++++++++|.+++++++++|+++++..+..+..++..++.++..++..+.+.|.++|+++||+++.|+.+.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 337 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAF 337 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHH
Confidence 88888888889999999999999999989888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~ 273 (922)
++|.+...+..+...+......+...+..++..+..++++++|++++.+|.+++|.++++..+...+..|+.++...+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~ 417 (686)
T TIGR03797 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLIS 417 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888877777777777788888999999999999999999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHH
Q 002434 274 FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (922)
Q Consensus 274 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 353 (922)
+++++.+.+|+.++++.+++..... ....+..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL 495 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTL 495 (686)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 9999999999999998765432211 1112235679999999999743 4679999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhh
Q 002434 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE 433 (922)
Q Consensus 354 ~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 433 (922)
+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+++++++++++++++.+++++++.++|
T Consensus 496 lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 575 (686)
T TIGR03797 496 LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575 (686)
T ss_pred HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCE
Q 002434 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (922)
Q Consensus 434 ~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~ 513 (922)
+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++ ++|+|+||||+++++.||+
T Consensus 576 ~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~ 653 (686)
T TIGR03797 576 MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADR 653 (686)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCE
Confidence 99999999999999999999999999999999999999999999999999999999886 6899999999999999999
Q ss_pred EEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 514 i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
|++|++|+|+|+|+|+||+++++.|+++++.|
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred EEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 99999999999999999999999999998754
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.4e-84 Score=796.36 Aligned_cols=502 Identities=26% Similarity=0.315 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
++++.++.+++.+++.++....+.++..++|.++|++++++|+++|++ .++|++++|+++| +.+++.+...+...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~ 277 (710)
T TIGR03796 200 MGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATTALD 277 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHHHHH
Confidence 334445556777888888899999999999999999999999999998 5999999999988 78999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~ 195 (922)
++.+++.++++++++|++++++++.+|+.+++...+.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++
T Consensus 278 ~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~ 357 (710)
T TIGR03796 278 AVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSR 357 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (922)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~ 275 (922)
|.+...+..+...+......+...+..++..+..++++++|++++.+|.+++|.++++..+...+..|+.++...+..++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~ 437 (710)
T TIGR03796 358 WAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQ 437 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888877777777777777778888899999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC------CCCC-CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCC
Q 002434 276 QGRIAAYRLYEMISRSSSTTNYD------GNTL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (922)
Q Consensus 276 ~a~~a~~ri~~~l~~~~~~~~~~------~~~~-~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 348 (922)
+++.+.+|+.++++.+++..... .... +...+.|+++||+|+|++. ++++|+|+||+|++||++||||||||
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGs 516 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGS 516 (710)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCC
Confidence 99999999999998765432111 0111 2335689999999999743 46799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHH
Q 002434 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (922)
Q Consensus 349 GKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~ 427 (922)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++ ++++++++++++.+++++
T Consensus 517 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~ 596 (710)
T TIGR03796 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD 596 (710)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 789999999999999999
Q ss_pred hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcch
Q 002434 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 428 ~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 507 (922)
++.++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++ .++|+|+||||+++
T Consensus 597 ~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~ 674 (710)
T TIGR03796 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST 674 (710)
T ss_pred HHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976 58999999999999
Q ss_pred hhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHH
Q 002434 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (922)
Q Consensus 508 ~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~ 542 (922)
++.||+|++|++|+|++.|+|+||+++++.|++++
T Consensus 675 i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 675 IRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999999999999886
No 15
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.1e-84 Score=794.82 Aligned_cols=501 Identities=26% Similarity=0.344 Sum_probs=458.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
++.+...++.+++.++..+.+.++..++|.++|++++++|++||++ .++|++++|++ |++.+++.+...+...+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~ 281 (708)
T TIGR01193 204 IAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMW 281 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677888888899999999999999999999999999998 59999999997 899999999888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 002434 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (922)
Q Consensus 118 ~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~ 197 (922)
.+++.++++++++|++++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.
T Consensus 282 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 361 (708)
T TIGR01193 282 ILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKID 361 (708)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a 277 (922)
+...+..+...+..........+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+.++...+..++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~ 441 (708)
T TIGR01193 362 SEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777766666666667778888999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 278 RIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
+.+.+|+.++++.+++.+.... ...++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlkl 519 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKL 519 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987654322111 112234578999999999963 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcC-c-CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-R-DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
|+|+|+|++|+|++||+|+++++.+++|++|+||||+|+||++||+|||.++ + ++++++++++++.++++++|..+|+
T Consensus 520 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~ 599 (708)
T TIGR01193 520 LVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL 599 (708)
T ss_pred HhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999998 3 6899999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i 514 (922)
||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|
T Consensus 600 gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i 678 (708)
T TIGR01193 600 GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKI 678 (708)
T ss_pred ccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999999999999999875 689999999999999999999
Q ss_pred EEEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 515 AVMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 515 ~vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
++|++|++++.|+|+||++++|.|+++++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999998874
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9e-84 Score=771.45 Aligned_cols=502 Identities=24% Similarity=0.286 Sum_probs=451.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
+++++..++.+++.++....+.++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+++.+...+..++..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~ 146 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALV 146 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888888889999999999999999999999999998 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAA-GGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 118 ~~i~~li~~~~~~~~l~lv~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
.+++.++++++++|++++++++++|+++++ ..++.+..++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|
T Consensus 147 ~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 226 (574)
T PRK11160 147 VILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQL 226 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHH
Confidence 999999999999999999988888776543 4566677778888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVIL-SGLGLNQAATNFYSFD 275 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~-~~~~l~~l~~~~~~~~ 275 (922)
.+..++..+...+.....++..++..++..+..++++++|+++ .+|.++.|.+++++.+... ...++..+...+..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 227 EQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888777777777777778888999988 4889999998887655433 3456777788888999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHH
Q 002434 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (922)
Q Consensus 276 ~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ 355 (922)
+++.+++|+.++++.+++..........+..+.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||++
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876542211111112234679999999999743 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 356 ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
+|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+++ +.++++++++++.+++++++.+ |+
T Consensus 385 ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~ 463 (574)
T PRK11160 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DK 463 (574)
T ss_pred HHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cc
Confidence 999999999999999999999999999999999999999999999999999997 6899999999999999999999 99
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i 514 (922)
||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|
T Consensus 464 GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred ccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 515 AVMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 515 ~vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
++|++|+++|.|+|+||++++|.|+++++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 99999999999999999999999999886
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.2e-83 Score=767.40 Aligned_cols=505 Identities=30% Similarity=0.479 Sum_probs=461.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
+++++.+++.++..++..+.+.++..++|.++|+++++.|+++|++ .+.|++++|+++|++.+++.+...+..++..++
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777778888999999999999999999999999998 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 002434 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (922)
Q Consensus 118 ~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~ 197 (922)
.+++.++++++++|.+++++++++|+.+++.....+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 99999999999999999999998898888888888888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a 277 (922)
+..++..+...+......+...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 311 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 311 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777777777777777777888899999999999999999888877777888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHH
Q 002434 278 RIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357 (922)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll 357 (922)
+.+.+|+.++++.+++.+. +....++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|
T Consensus 312 ~~~~~ri~~~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll 389 (582)
T PRK11176 312 MAACQTLFAILDLEQEKDE-GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLL 389 (582)
T ss_pred HHHHHHHHHHhcCCCcCCC-CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999986544221 111122334579999999999743 46799999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 358 ~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+ ++++++++++++.++++++++++|+|
T Consensus 390 ~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~G 469 (582)
T PRK11176 390 TRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNG 469 (582)
T ss_pred HhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999986 37999999999999999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|+
T Consensus 470 ldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii 549 (582)
T PRK11176 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549 (582)
T ss_pred cCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 516 VMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 516 vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
+|++|+|+|.|+|++|+++++.|+++++.|
T Consensus 550 ~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 550 VVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred EEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 999999999999999999999999999765
No 18
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5e-83 Score=782.47 Aligned_cols=493 Identities=26% Similarity=0.381 Sum_probs=453.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
++.++..++.+++.++..+.+.++..++|.++|+|++++|++| ++ .++|++++|+ +|++.+++.+...+...+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~ 271 (694)
T TIGR03375 195 LAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLP 271 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHH
Confidence 3344456677888888999999999999999999999999998 66 5899999998 7999999999988888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 002434 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (922)
Q Consensus 118 ~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~ 197 (922)
.+++.++++++++|.+++++++.+|+++++.+++.+..++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.
T Consensus 272 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 351 (694)
T TIGR03375 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWE 351 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHH
Confidence 88888889999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a 277 (922)
+...+..+...+......+...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~ 431 (694)
T TIGR03375 352 QTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQA 431 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888877777777777788888999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 278 RIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
+.+.+|+.++++.+++.+.... ...+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlkl 510 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKL 510 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987654322111 1122345679999999999743 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++ ++++++++++++.+++++++..+|+|
T Consensus 511 L~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~g 590 (694)
T TIGR03375 511 LLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDG 590 (694)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999998 58999999999999999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
|||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+++.|++..+++|+|+||||+++++.||+|+
T Consensus 591 l~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii 670 (694)
T TIGR03375 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII 670 (694)
T ss_pred ccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEeCCeEEEecCHHHHhhc
Q 002434 516 VMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 516 vl~~G~i~~~G~~~eL~~~ 534 (922)
+|++|+|+|+|+|+||+++
T Consensus 671 vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 671 VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999864
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-82 Score=713.10 Aligned_cols=508 Identities=26% Similarity=0.305 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
++++.++..++.+.........+.++...+|+.+++++.++++.+-.. .++|+..+.+...++.++.+++..++.++..
T Consensus 46 l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~ 124 (559)
T COG4988 46 LLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLS 124 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666777777778888999999999999999999999988 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~ 195 (922)
.+..+..++.+|+++|.-+++++++.|++.++++++++..++..++....+...++.+.|.++|+.|+|+|+..+...++
T Consensus 125 ~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~ 204 (559)
T COG4988 125 AIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEER 204 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NKAHGGEIVTALFAVILSGLGLNQAATNFYSF 274 (922)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 274 (922)
..+..++.++..++.-++.-+......+++++..+++..+.+..... |+++....+.++...--++.|+..+...++.-
T Consensus 205 i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~ 284 (559)
T COG4988 205 IRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAA 284 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99988888888887777766666677777777777776666666666 78886655544444444567999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCC-CC-CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 275 DQGRIAAYRLYEMISRSSSTTNYDGN-TL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 275 ~~a~~a~~ri~~~l~~~~~~~~~~~~-~~-~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
+++..+.+.++.+++.+.+..+.... .. .....+++.+|++|.|++. +++++|+||++++|+++||||+|||||||
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 99999999999999887653322211 11 1123345566999999743 38999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
|+++|+|+++|++|+|.+||+++++++.+.||++++||+|+|+||++||||||++++ +.+++++.++++.+++.+++..
T Consensus 363 Ll~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 363 LLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhcc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 511 (922)
|+|+||.+||+|.+|||||+||+++|||++++++++|||||||+||.+||+.|.+.|.++.+++|+|+||||+..+++|
T Consensus 443 -p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~ 521 (559)
T COG4988 443 -PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA 521 (559)
T ss_pred -CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 512 D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
|+|+||++|+++|+|+|++|.+++|.|+++++.|+.
T Consensus 522 D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 522 DRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred CEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999999999999988753
No 20
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.4e-82 Score=774.65 Aligned_cols=509 Identities=29% Similarity=0.416 Sum_probs=465.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (922)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i 113 (922)
+.++++.++.+++.+++.++....+.++..++|.++|++++++|++||++ .++|++++|+ +|++.+++.+...+...+
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~ 260 (694)
T TIGR01846 183 LAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVV 260 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 33444455566778888899999999999999999999999999999998 6999999999 699999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 002434 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (922)
Q Consensus 114 ~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~ 193 (922)
.+++.+++.++++++++|.+++++++++|+++++..++.+..++..++..+..++.++.+.|+++|+++||+++.|+.+.
T Consensus 261 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 340 (694)
T TIGR01846 261 LDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQ 340 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHH
Confidence 78877777788999999999999999999998888888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~ 273 (922)
++|.+..++..+...+......+...+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~ 420 (694)
T TIGR01846 341 NRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQD 420 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888877777777777788888999999999999999999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHH
Q 002434 274 FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (922)
Q Consensus 274 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 353 (922)
+++++.+.+|+.++++.+++.........+...+.|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL 499 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTL 499 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHH
Confidence 999999999999999876543221111223345689999999999743 4579999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHh
Q 002434 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSL 432 (922)
Q Consensus 354 ~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l 432 (922)
+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.+++ ++++++++++++.+++++++.++
T Consensus 500 ~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 579 (694)
T TIGR01846 500 TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL 579 (694)
T ss_pred HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987 68999999999999999999999
Q ss_pred hccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccC
Q 002434 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD 512 (922)
Q Consensus 433 ~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D 512 (922)
|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||
T Consensus 580 p~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d 659 (694)
T TIGR01846 580 PQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659 (694)
T ss_pred cCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 513 YIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 513 ~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
+|++|++|+|+++|+|+||+++++.|+++++.|
T Consensus 660 ~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 660 RIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred EEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 999999999999999999999999999998754
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.1e-82 Score=760.95 Aligned_cols=504 Identities=24% Similarity=0.316 Sum_probs=444.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
++.++..++.++..+.....+.++..++|.++|+++++.|+++|++ .++|++++|+++|++.+++.+...+..++..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~ 151 (592)
T PRK10790 73 GLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAA 151 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667778888888999999999999999999999999998 599999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 002434 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (922)
Q Consensus 118 ~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~ 197 (922)
.+++.++++++++|.+++++++++|+++++.....++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.
T Consensus 152 ~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~ 231 (592)
T PRK10790 152 LIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMG 231 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHH
Confidence 88888899999999999999888888877777777777777777788888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 198 TSLQATLRYGILISLVQGLG-LGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
+..++..+...+.....++. ..+..++..+..+++++++++ +..|.+++|.+++++.+......|+..+...+..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 232 EASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766655544432 223333333222233333334 5789999999999888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
++.+++|+.++++.+++.... ...+...++|+++||+|+|++ ++++|+|+||+|++||++||||+||||||||+++
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~l 386 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYGN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASL 386 (592)
T ss_pred HHHHHHHHHHHhcCCCccCCC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999865432111 111223467999999999973 3579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGY 436 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~ 436 (922)
|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++++++++++++++.+++++++..+|+||
T Consensus 387 L~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gl 466 (592)
T PRK10790 387 LMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGL 466 (592)
T ss_pred HhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEE
Q 002434 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 437 ~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~v 516 (922)
||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++
T Consensus 467 dt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~ 546 (592)
T PRK10790 467 YTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILV 546 (592)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 517 MDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 517 l~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
|++|++++.|+|+||+++++.|+++++.|..
T Consensus 547 l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 547 LHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999999987753
No 22
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.1e-79 Score=795.44 Aligned_cols=734 Identities=16% Similarity=0.192 Sum_probs=512.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002434 53 CWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ 132 (922)
Q Consensus 53 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~ 132 (922)
...+.+.++...++..+|+|+++++..++++ .++|++++++++|++.+.+.. ..+..++...+.+++++++++.....
T Consensus 381 ~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~ 458 (1522)
T TIGR00957 381 ICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGP 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456788999999999999999999999998 589999999999999988754 23333333333333333333222122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 133 IALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISL 212 (922)
Q Consensus 133 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~ 212 (922)
.+++.++++++++.+...+.+.+++..++.++..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444445555556667778888888888999999999999999999999999999999999888887776666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002434 213 VQGLGLGFTYGLAICSCALQLWVGRFLVTH--NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~--g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 290 (922)
...+..........+ +.++.++.+.+.. +.++.+.+++++.++.....|+..++..+..+.+++++.+|+.++++.
T Consensus 539 ~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWVCTPFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 544433222222221 2222345566553 568888888877777777789999999999999999999999999986
Q ss_pred CCCCCCC-CCCCCC-CCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE
Q 002434 291 SSSTTNY-DGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (922)
Q Consensus 291 ~~~~~~~-~~~~~~-~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I 368 (922)
+++.... ...... ...+.|+++|++|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 5432211 011111 112369999999999642 4579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCC
Q 002434 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (922)
Q Consensus 369 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS 448 (922)
.+|| +|+||+|+|++|++||+|||.+|.+.++++++++++.|++.+++..+|+|++|.+|++|.+||
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 9998 699999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---HcCCCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL---LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
|||||||+||||++++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999988853 4568999999999999999999999999999999
Q ss_pred cCHHHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccCCCccccccccCCCCCCCC
Q 002434 526 GTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFD 605 (922)
Q Consensus 526 G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (922)
|+|+|+.++++.|.+++..+........ .... ..... ...... .. .
T Consensus 843 g~~~~l~~~~~~~~~l~~~~~~~~~~~~------~~~~----~~~~~------~~~~~~---~~--------------~- 888 (1522)
T TIGR00957 843 GSYQELLQRDGAFAEFLRTYAPDEQQGH------LEDS----WTALV------SGEGKE---AK--------------L- 888 (1522)
T ss_pred CCHHHHHhcchhHHHHHHhhcccccccc------cccc----ccccc------cccccc---cc--------------c-
Confidence 9999999988888888754422110000 0000 00000 000000 00 0
Q ss_pred CCCCCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCcccccc
Q 002434 606 SQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSH 685 (922)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (922)
.+.+.......+ ++. ...... ..+.....+.... ....
T Consensus 889 -~~~~~~~~~~~~----~~~-------~~~~~~--------------------------~~~~~~~~~~~~~---~~~~- 926 (1522)
T TIGR00957 889 -IENGMLVTDVVG----KQL-------QRQLSA--------------------------SSSDSGDQSRHHG---SSAE- 926 (1522)
T ss_pred -cccccccccccc----chh-------hhhccc--------------------------ccccccccccccc---cccc-
Confidence 000000000000 000 000000 0000000000000 0000
Q ss_pred CcccCCCCCCCCCCCcchhhhhhhcC---CcchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC
Q 002434 686 SQTFSRPHSHSDDFPTKVREEESKHQ---KAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPE 762 (922)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~ 762 (922)
.+. ...++. .....+++++.. ....|+.|++... +..+++.++.+++..++.....+|++ +|...
T Consensus 927 ---~~~-~~~~~~-~~~~~~~e~~~~g~v~~~~y~~Y~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~-----~w~~~ 994 (1522)
T TIGR00957 927 ---LQK-AEAKEE-TWKLMEADKAQTGQVELSVYWDYMKAIG--LFITFLSIFLFVCNHVSALASNYWLS-----LWTDD 994 (1522)
T ss_pred ---ccc-cccccc-hhhhHHHHHHhcCcccHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcc
Confidence 000 000000 001111222222 3345555555332 22221111222222111112223333 23221
Q ss_pred cc-hhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccH
Q 002434 763 ER-HHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDA 841 (922)
Q Consensus 763 ~~-~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~ 841 (922)
.. .........|..+|++++++..++.+++.+++.+++.++++++|+++|++++++|++||| ++|+|+|+|||++|+
T Consensus 995 ~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di 1072 (1522)
T TIGR00957 995 PMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKEL 1072 (1522)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHH
Confidence 00 000112335667889999999999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 842 TFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894 (922)
Q Consensus 842 ~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~ 894 (922)
+.+|..++..+..++..++.+++++++.++.+|.+++++++++++.++.....
T Consensus 1073 ~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1125 (1522)
T TIGR00957 1073 DTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFY 1125 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887776666655555443333
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.9e-81 Score=745.35 Aligned_cols=507 Identities=25% Similarity=0.354 Sum_probs=454.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (922)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~ 117 (922)
++.++..++.++..++....+.++..++|.++|++++++|+++|++ .++|++++|+++|++.++..+...+..++..++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~ 122 (569)
T PRK10789 44 LIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLV 122 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777778888999999999999999999999999998 589999999999999999887777777777766
Q ss_pred HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 118 TFFSGLAIA-FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 118 ~~i~~li~~-~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
.+++.++++ ++++|.+++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|
T Consensus 123 ~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~ 202 (569)
T PRK10789 123 MGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALF 202 (569)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 666665555 5899999999999999988888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+.....+....+...+..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 282 (569)
T PRK10789 203 AADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVER 282 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777776666666666667777889999999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
++.+.+|+.++++.+++.... ....+...+.|+++||+|+|+.. +.++|+|+||+|+||++++|+||||||||||+++
T Consensus 283 ~~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~l 360 (569)
T PRK10789 283 GSAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSL 360 (569)
T ss_pred HHHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876432211 11122334679999999999743 4579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
|+|+|+|++|+|.+||+|+.+++..++|++|+||+|+|++|++|++|||.+++ ++++++++++++.+++++++.++|+|
T Consensus 361 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g 440 (569)
T PRK10789 361 IQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG 440 (569)
T ss_pred HhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999999996 68999999999999999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
+||.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|+
T Consensus 441 l~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~ 520 (569)
T PRK10789 441 YDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIL 520 (569)
T ss_pred ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 516 VMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 516 vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
+|++|+++++|+|+|++++++.|+++++.|+.
T Consensus 521 ~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 521 VMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred EEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 99999999999999999999999999987653
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.5e-80 Score=745.93 Aligned_cols=507 Identities=31% Similarity=0.475 Sum_probs=468.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
++++.++.+++.++..+...+.+.++..++|..+++++++.|.++|++ .+.|++++|+++|++.+++.+...+..++.+
T Consensus 60 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777888888999999999999999999999999999998 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~ 195 (922)
++.+++.++++++++|.++++++++.|+.+++..+..+..++..++.++..++..+.+.|.++|+++||+++.++.+.++
T Consensus 139 ~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 139 TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (922)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~ 275 (922)
|.+..++..+...+.....++...+..++..+..++++++|++++.+|.+++|.++++..++.....|+..+...+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 298 (571)
T TIGR02203 219 FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887777777777777888889999999999999999999999888888899999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHH
Q 002434 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (922)
Q Consensus 276 ~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ 355 (922)
+++.+.+|+.++++.+++.+.. ....++..+.|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTG-TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999866443211 11122234679999999999754 457999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhh
Q 002434 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLE 433 (922)
Q Consensus 356 ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~ 433 (922)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++||+|||.+++ +.++++++++++.+++++++.++|
T Consensus 377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp 456 (571)
T TIGR02203 377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456 (571)
T ss_pred HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999996 589999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCE
Q 002434 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (922)
Q Consensus 434 ~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~ 513 (922)
+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+
T Consensus 457 ~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 457 LGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred CcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 514 i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
|++|++|++++.|+|++++++++.|+++++.+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999889999987754
No 25
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-84 Score=703.15 Aligned_cols=501 Identities=27% Similarity=0.371 Sum_probs=436.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 44 FAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL 123 (922)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~l 123 (922)
.+++-++.++|..+.+-..+++-.++|+|+.++++.|+-. +++|+++.-+++..+.+. ++...+.++...+.-+.+++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 4556677888888888999999999999999999999998 589999998888777665 55555555555555555555
Q ss_pred HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 002434 124 AI-AFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (922)
Q Consensus 124 i~-~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~ 202 (922)
+. ....+|+.+++++++..+++.+.+.+.-+-.+..++......+..+...+++-+.+|||-||+|+.+.++|.++..+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~ 430 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence 53 33578999999999888888777666666666666666666677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 203 TLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAY 282 (922)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ 282 (922)
+.+...+......+.......+..+..+..-.+.+|+|..+.+++|+++.+..|++....|++-+...+..+++..+-.+
T Consensus 431 Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmE 510 (790)
T KOG0056|consen 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDME 510 (790)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHH
Confidence 88877776554444444444444444444444556778899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 283 RLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 283 ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++++++++..+..+ .+.....|.|+|+||+|.|+ +++|+|+||||+++||+++|+|||||+||||++++|.|||
T Consensus 511 nmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred HHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 99999998876544333 22334578999999999996 5689999999999999999999999999999999999999
Q ss_pred CCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhh
Q 002434 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQV 440 (922)
Q Consensus 362 ~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 440 (922)
+.++|.|.+||+||+++...++|++||+||||..|||+||..||.|++ .+++||+.+|+++|++||-|.++|+||+|.|
T Consensus 589 dv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~V 668 (790)
T KOG0056|consen 589 DVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRV 668 (790)
T ss_pred hccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 441 ge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
||+|-.||||||||+||||+++++|.|++|||+|||||..+|+.|+.++.++..+||+|+|+||++++-+||.|+|+++|
T Consensus 669 GERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 669 GERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred hhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCHHHHhhc-CcHHHHHHHhHHhh
Q 002434 521 RLFEMGTHDELLAT-GDLYAELLKCEEAA 548 (922)
Q Consensus 521 ~i~~~G~~~eL~~~-~~~~~~l~~~~~~~ 548 (922)
+|+|.|+|+||+++ +|.|++||+.|+..
T Consensus 749 ~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 749 RIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred eEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 99999999999998 89999999877643
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-81 Score=695.87 Aligned_cols=510 Identities=30% Similarity=0.379 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGN 111 (922)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~ 111 (922)
..+.+.++.++..+++.++...+.++.++..++.-.+.|+++++++.++|.+ ..+|++.+.+.+....|...+...+..
T Consensus 76 ~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 76 LLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445666777888889999999999999999999999999999999999999 589999999999999999988887777
Q ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 112 YIHNMATFFSGL-AIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 112 ~i~~~~~~i~~l-i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
++..++.+.... .+..-.....+++.+..+..+..+.+....+-.+..++..++.+++.+.+.|.+.|.++||+||.|+
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 777666554443 3334456677777777777777777777777777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~ 270 (922)
.+.++|...+..+.+.+.+.....++.......+.....+.+.+.|..-+.+|.++.|+++.......++..|+..+...
T Consensus 235 ~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~v 314 (591)
T KOG0057|consen 235 YEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSV 314 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 99999999999999988888777777666666666566667777787778899999999988777777888889888888
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcH
Q 002434 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGK 350 (922)
Q Consensus 271 ~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 350 (922)
+..+.++..-..-++...+...+..+ ...+....++.|+|+||+|+|+ +++++|+++||+|++||+|||||+|||||
T Consensus 315 yr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGK 391 (591)
T KOG0057|consen 315 YRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGK 391 (591)
T ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCH
Confidence 88887776666655544333222111 1122234567799999999996 45679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhH
Q 002434 351 SSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFI 429 (922)
Q Consensus 351 STl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i 429 (922)
||++++|+||++ ++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+ .++++++.++||.+++||-|
T Consensus 392 STilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i 470 (591)
T KOG0057|consen 392 STILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVI 470 (591)
T ss_pred HHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh
Q 002434 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509 (922)
Q Consensus 430 ~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 509 (922)
.++|+||+|.|||+|..|||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||+++++
T Consensus 471 ~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 471 SRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred HhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 510 NADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 510 ~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
+||+|+++++|++.|.|+|+||++..+.|+++|..|.
T Consensus 551 ~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 551 DFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred cCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 9999999999999999999999998899999998764
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.1e-79 Score=737.35 Aligned_cols=493 Identities=27% Similarity=0.392 Sum_probs=441.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002434 51 VSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNC 130 (922)
Q Consensus 51 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~ 130 (922)
.....+...+...++|.++|++++++|+.+|++ .+.|++++|+++|++.+.+.+...+..++..++.+++.+++++.++
T Consensus 77 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK13657 77 ARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMN 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555667779999999999999998 6999999999999999998888888888877777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 002434 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (922)
Q Consensus 131 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~ 210 (922)
|.+++++++++|+.+++...+.+..++..++.++..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+.
T Consensus 156 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
T PRK13657 156 WRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPV 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888778888888888888888899999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002434 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 290 (922)
.....+...+..++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..++.+.+|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 315 (588)
T PRK13657 236 LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA 315 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77766666666666777778888999999999999999999988888888889999999999999999999999999886
Q ss_pred CCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE
Q 002434 291 SSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (922)
Q Consensus 291 ~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~ 369 (922)
+++.+...+ ...++..+.|+++||+|+|++ ++++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 316 VPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CcccCCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 543221111 111223457999999999973 24699999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCC
Q 002434 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (922)
Q Consensus 370 i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS 448 (922)
+||+|+.+++.+++|++|+||||+|++|++||+|||++++ +.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 9999999999999999999999999999999999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCH
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~ 528 (922)
|||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHhHH
Q 002434 529 DELLATGDLYAELLKCEE 546 (922)
Q Consensus 529 ~eL~~~~~~~~~l~~~~~ 546 (922)
++|+++++.|+++++.+.
T Consensus 554 ~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVARGGRFAALLRAQG 571 (588)
T ss_pred HHHHHCCChHHHHHHHhh
Confidence 999999999999988654
No 28
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.9e-80 Score=735.30 Aligned_cols=462 Identities=22% Similarity=0.253 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (922)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~ 119 (922)
.++..++.++..++....+.++..++|.++|++++++|.+||++ .++|++++|+++|++.+++.+...+..++..++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888999999999999999999999999998 69999999999999999999999899999999889
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 002434 120 FSGLAIAFVNCWQIALITLCTGPFIVAAGGISN-IFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (922)
Q Consensus 120 i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~ 198 (922)
++.++++++++|.+++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 999999999999999999888777666553333 3345556667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (922)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~ 278 (922)
..++..+...+.....++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888877777777777777788888999999999999999999988888778888888898999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCC---CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHH
Q 002434 279 IAAYRLYEMISRSSSTTNYDG---NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (922)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~---~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ 355 (922)
.+.+|+.++++.+++...... ...++..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999987654221111 111123457999999999974 346999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 356 ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
+|+|+|+|++|+|.+||+|++++ .+++|++|+||||+|+||++||+|||++|+ ++++++++++++.++++++|.+||+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999999997 6899999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.|++.+++..+++|+|+||||+
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999988899999999996
No 29
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.8e-79 Score=731.76 Aligned_cols=495 Identities=26% Similarity=0.374 Sum_probs=441.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 49 IEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFV 128 (922)
Q Consensus 49 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~ 128 (922)
+........+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555566779999999999999998 58999999999999999999888888888888888888888999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 002434 129 NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208 (922)
Q Consensus 129 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~ 208 (922)
++|.+++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888888999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002434 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMI 288 (922)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l 288 (922)
+.....++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+.++...+..+..++.+.+|+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 313 (585)
T TIGR01192 234 PVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666677788889999999999999999999888888788899999999999999999999999999
Q ss_pred ccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcE
Q 002434 289 SRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367 (922)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~ 367 (922)
+.+++...... ...+...+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred cCCccccCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 86543221111 111223457999999999963 246899999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 368 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
|.+||+|+.+++.+++|++++||+|+|++|++|++|||.++. ++++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 999999999999999999999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEec
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G 526 (922)
|||||||||+||||++++|++||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CHHHHhhcCcHHHHHHHhHH
Q 002434 527 THDELLATGDLYAELLKCEE 546 (922)
Q Consensus 527 ~~~eL~~~~~~~~~l~~~~~ 546 (922)
+|+|++++++.|+++++.+.
T Consensus 552 ~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 552 SFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred CHHHHHHCCChHHHHHHhCc
Confidence 99999999999999998764
No 30
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.1e-80 Score=801.99 Aligned_cols=504 Identities=20% Similarity=0.228 Sum_probs=430.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
+++++++..++.++..+++...+.+..+++|++++++++++|++||++ .++|++++|+++|++.+++.+...+..++..
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~ 1089 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGS 1089 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777788888899999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~ 195 (922)
++.+++.++++++.+|.++++++.+++++.++..++.+..+...+......+...+.+.|+++|+++||+|++|+.+.++
T Consensus 1090 ~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~ 1169 (1522)
T TIGR00957 1090 LFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQ 1169 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHH
Confidence 99999998888888887666555444444333333333333333334455567789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT-HNKAHGGEIVTALFAVILSGLGLNQAATNFYSF 274 (922)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 274 (922)
+.+..+...+........+.+......++. .++++++|++.+. .|.+++|.+.+++.+......++..+...+..+
T Consensus 1170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~ 1246 (1522)
T TIGR00957 1170 SDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEM 1246 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888877776665555555443333322 2233445555554 578999999888888888888999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCC--CCCCCC--CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcH
Q 002434 275 DQGRIAAYRLYEMISRSSSTTN--YDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGK 350 (922)
Q Consensus 275 ~~a~~a~~ri~~~l~~~~~~~~--~~~~~~--~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 350 (922)
+.+..|++|+.++++.+++... +...++ .+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+|||||
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGK 1325 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGK 1325 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCH
Confidence 9999999999999977654321 111111 1346889999999999753 3479999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHH
Q 002434 351 SSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430 (922)
Q Consensus 351 STl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~ 430 (922)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.+..+++++++++|++.|+++++|.
T Consensus 1326 STL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~ 1405 (1522)
T TIGR00957 1326 SSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVS 1405 (1522)
T ss_pred HHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999656899999999999999999999
Q ss_pred HhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc
Q 002434 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN 510 (922)
Q Consensus 431 ~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 510 (922)
++|+||||.|||+|.+||||||||||||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+
T Consensus 1406 ~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred hCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHh
Q 002434 511 ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKC 544 (922)
Q Consensus 511 ~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~ 544 (922)
||+|+||++|+|+|.|+|+||+++++.|+++++.
T Consensus 1486 ~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1486 YTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999875
No 31
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.7e-79 Score=734.62 Aligned_cols=508 Identities=34% Similarity=0.522 Sum_probs=455.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
+++.+...++.+++.+...+++.++..++|..+++++++.|.++|++ .+.|++++|+++|++.+++.+...+..++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 143 (576)
T TIGR02204 65 LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNA 143 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566777788888999999999999999999999999998 58999999999999999999988888888899
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++.+++++.++|.+++++++..|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~ 223 (576)
T TIGR02204 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRF 223 (576)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHH
Confidence 99999999999999999999998888888888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+......+...+...+..+..++++++|++++.+|.+++|.++++..+......|+..++..+..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~ 303 (576)
T TIGR02204 224 GGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQR 303 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777666666555555555555566777888999999999999999998888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCC-CCCC-CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYD-GNTL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~-~~~~-~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~ 354 (922)
++.+.+|+.++++.+++.+... .... .+..+.|+++||+|+|++++++++|+|+||+|+|||+++|+|+||||||||+
T Consensus 304 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl 383 (576)
T TIGR02204 304 AAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF 383 (576)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH
Confidence 9999999999998654321111 1111 1224569999999999754346799999999999999999999999999999
Q ss_pred HHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhh
Q 002434 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (922)
Q Consensus 355 ~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~ 433 (922)
++|+|+|+|++|+|.+||.|+++++..++|++|+|+||+|++|++||+|||.+++ +.++++++++++.+++++++..+|
T Consensus 384 klL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~ 463 (576)
T TIGR02204 384 QLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALP 463 (576)
T ss_pred HHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987 578999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCE
Q 002434 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (922)
Q Consensus 434 ~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~ 513 (922)
+|+||.+||+|.+|||||||||+||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+
T Consensus 464 ~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 464 EGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred CCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 514 i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
|++|++|++++.|+|++++++++.|+++++.|
T Consensus 544 vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 544 IVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred EEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 99999999999999999999999999988654
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-78 Score=788.93 Aligned_cols=503 Identities=21% Similarity=0.258 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (922)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~ 114 (922)
.+++++++..++.+++.+++...+.+...++|.+++++++++|++||++ +++|++++|+++|++.+++.+...+..++.
T Consensus 958 i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~ 1036 (1622)
T PLN03130 958 IYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777888888889999999999999999999999999999 699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHR----LAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 115 ~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.++.+++.++++++++|... ++ ++|+.+++. ....+..+ ..+......+...+.+.|+++|+++||+|+.++
T Consensus 1037 ~~~~~i~~~i~i~~~~~~~~-~~--~~pl~~~~~-~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1037 QIFQLLSTFVLIGIVSTISL-WA--IMPLLVLFY-GAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 98888888888887777332 22 223322221 12222222 222233344567788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc-----HHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNK-AH-----GGEIVTALFAVILSGLGL 264 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-lt-----~g~l~~~~~~~~~~~~~l 264 (922)
++.+++.+..+...+..........+......+ +..+++++.|.+.+..+. .. .+.+..++.+.+....++
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l 1189 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLL 1189 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 877776666655544433332222222111111 122222333344444332 11 122222233334444456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCCC--CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEE
Q 002434 265 NQAATNFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAV 340 (922)
Q Consensus 265 ~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~~~--~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~v 340 (922)
..+...+..++.+..|.+|+.++++.+++.+. ++..+. .+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++
T Consensus 1190 ~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekV 1268 (1622)
T PLN03130 1190 TAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKV 1268 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEE
Confidence 66666777788999999999999987654321 111111 1346789999999999642 357999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHH
Q 002434 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAA 420 (922)
Q Consensus 341 aivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~ 420 (922)
||||+||||||||+++|+|+|+|++|+|++||+|+++++++++|++|++|||||.||+|||||||.++++++++++++|+
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al 1348 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1348 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 002434 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII 500 (922)
Q Consensus 421 ~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 500 (922)
+.++++++|.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1349 ~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~ 1428 (1622)
T PLN03130 1349 ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428 (1622)
T ss_pred HHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcchhhccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHHHhHH
Q 002434 501 IARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (922)
Q Consensus 501 itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~~~~~ 546 (922)
||||++++++||+|+||++|+|+|.|+|+||+++ +|.|+++++...
T Consensus 1429 IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1429 IAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999987 689999987654
No 33
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-78 Score=671.22 Aligned_cols=500 Identities=24% Similarity=0.281 Sum_probs=430.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (922)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~ 119 (922)
|++..+.-|......+....++...+|.++|+++...++.-..+ .++||+++|+..|++.+++.+-..+.+.+..+...
T Consensus 68 aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 68 AILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 44445566777777788888999999999999999999999998 58999999999999999999999998888888777
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Q 002434 120 FSGLAIAFVNCWQIALITLCT-GPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (922)
Q Consensus 120 i~~li~~~~~~~~l~lv~l~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~ 198 (922)
.+..+.+.+++|.+++.+... +.+++++..++.++.++..++.....+...+.+.|.+.|....+.||+++.+.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 777777767888888655443 3444555566667777777788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 002434 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCA-LQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA-TNFYSFDQ 276 (922)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~-~~~~~~~~ 276 (922)
....+.+...+...+.++...+..++..+..+ .++|.+ ..+..|..+......+++.++....++..+. ..+....+
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 99999998888888888877777766655555 445544 3445666664444444433333344444444 66778889
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
...|+.|+.++++.+++...+ +...+..+..++++||+|+||++ +.++|+|+||++++||++||+|+|||||||++++
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~-~~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP-DEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC-ccccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHH
Confidence 999999999999988765433 11122222279999999999864 5689999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
|.|.|+|++|+|.++|.++..++.+.+|+.|++++|.+++|++|+|||+.+++ +++||+++++++++++++++++.|+|
T Consensus 384 l~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~g 463 (573)
T COG4987 384 LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDG 463 (573)
T ss_pred HHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
|+|.+||+|.+||||||||+||||++++|+|++||||||.+||++||+++++.|.+..+|||+|+||||+..++.||||+
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 516 VMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 516 vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
||++|+++|+|+|.+|+.++|.|+++++
T Consensus 544 vl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 544 VLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred EEECCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999999999875
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.6e-78 Score=718.50 Aligned_cols=482 Identities=24% Similarity=0.290 Sum_probs=428.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (922)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~ 112 (922)
...+++++++..++.+++.+.....+.++..++|.++|++++++|..+|++ .++|++++|+++|++.+++.+...+..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334445566667788888999999999999999999999999999999998 6999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 002434 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (922)
Q Consensus 113 i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~ 192 (922)
+..++.+++.+++++.++|.++++++++.|+..++.....++.++..++.++..++..+.+.|.++|+++||+|+.|+.+
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 88888888889999999999999999888888777777788888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 272 (922)
.++|.+..++..+...+..........+..++..+..++++.++++.+.+|.++.|.+++++.+......|+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777666666555555555555555555566677779999999999888777777888999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 273 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
.+++++.+.+|+.++++.+++..+.. .......+.|+++||+|+|+++ ++++|+|+||+|+|||++||||||||||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKST 363 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAGKA-PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKST 363 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCc-CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHH
Confidence 99999999999999998543221111 1111123579999999999753 357999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
|+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.++. ++++++++++++.+++++++++
T Consensus 364 L~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~ 443 (529)
T TIGR02857 364 LLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAA 443 (529)
T ss_pred HHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 6799999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhcc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 511 (922)
+|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||+++++.|
T Consensus 444 lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 523 (529)
T TIGR02857 444 LPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERA 523 (529)
T ss_pred CcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEE
Q 002434 512 DYIAVM 517 (922)
Q Consensus 512 D~i~vl 517 (922)
|+|++|
T Consensus 524 d~i~~l 529 (529)
T TIGR02857 524 DRIVVL 529 (529)
T ss_pred CEEEeC
Confidence 999986
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.5e-78 Score=783.44 Aligned_cols=505 Identities=19% Similarity=0.210 Sum_probs=416.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (922)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~ 119 (922)
+++..+..++..+.....+.+..+++|.++|++++++|+.|||+ .++|++++|+++|++.+++.+...+..++..++.+
T Consensus 1008 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~ 1086 (1560)
T PTZ00243 1008 VLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSI 1086 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555556677788899999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 002434 120 FSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (922)
Q Consensus 120 i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~ 199 (922)
++.++++++.+|.+.++++.++.++..+...+.+..+...+......+...+.+.|+++|+++||+|+.++.+.++|.+.
T Consensus 1087 i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~ 1166 (1560)
T PTZ00243 1087 CSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRR 1166 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHH
Confidence 99988888888854433322221222222222233333333334456667899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 200 LQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFL--VTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (922)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a 277 (922)
.+...+..........+......++..+..+++.+++.+. ...+.+++|.+..++.+......++..+...+..++++
T Consensus 1167 ~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~ 1246 (1560)
T PTZ00243 1167 LDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEAD 1246 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555555544444444433333333344333 23455788887777777777778888999999999999
Q ss_pred HHHHHHHHHHhccCCCCC-CC-------------------------CC-C----CCCCCcccEEEEeEEEEeCCCCCCCc
Q 002434 278 RIAAYRLYEMISRSSSTT-NY-------------------------DG-N----TLPSVHGNIEFRNVYFSYLSRPEIPI 326 (922)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~-~~-------------------------~~-~----~~~~~~g~i~~~~v~f~y~~~~~~~v 326 (922)
+.+.+|+.++++..++++ .. .. . +.++..|.|+|+||+|+|+++ .+++
T Consensus 1247 ~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~v 1325 (1560)
T PTZ00243 1247 MNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLV 1325 (1560)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCce
Confidence 999999999996432210 00 00 0 011235789999999999743 3569
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~ 406 (922)
|+||||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+|||||||.
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId 1405 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHH
Q 002434 407 YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN-PSILLLDEVTGGLDFEAERAV 485 (922)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~-p~iliLDEpts~LD~~~~~~i 485 (922)
++++++++++++|++.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|
T Consensus 1406 p~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1406 PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHHHhHH
Q 002434 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (922)
Q Consensus 486 ~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~~~~~ 546 (922)
++.|++..+++|+|+||||++++++||+|+||++|+|+|.|+|+||+++ ++.|+++++.+.
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999998899999999999999999999999999999999999999985 899999987654
No 36
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.9e-78 Score=781.80 Aligned_cols=504 Identities=19% Similarity=0.245 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (922)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~ 114 (922)
.+++++++..++.+++.+++...+.+...++|++++++++++|++||++ +++|++++|+++|++.+++.+...+..++.
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~~~~ 1033 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNMFMN 1033 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 3445566667778888888889999999999999999999999999998 699999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 002434 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGG--I-SNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETL 191 (922)
Q Consensus 115 ~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~ 191 (922)
.++.+++.+++++++++...+ ++ +|+.+++.. . ..+..+...+......+...+.+.|+++|+++||+|+.++.
T Consensus 1034 ~~~~~i~~~i~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232 1034 QLWQLLSTFALIGTVSTISLW-AI--MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence 888888888777777653322 22 233222211 1 11222223333344556677889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcc-----HHHHHHHHHHHHHHHHHHH
Q 002434 192 AKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NKAH-----GGEIVTALFAVILSGLGLN 265 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~-g~lt-----~g~l~~~~~~~~~~~~~l~ 265 (922)
+.+++.+..+...+..........+.... +..+..+++++.|.+.+.. +.+. .+.+..++.+......++.
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1111 MAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 87777666665555443332222221111 1112222223334444442 3321 1222223334444555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCCC--CCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEE
Q 002434 266 QAATNFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVA 341 (922)
Q Consensus 266 ~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~~~--~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~va 341 (922)
.+...+..++.+..+.+|+.++++.+++.+. ....+. .+..|.|+|+||+|+|+++ .+++|+|+||+|+|||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 8888888999999999999999987654321 111111 1345789999999999532 3579999999999999999
Q ss_pred EeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHH
Q 002434 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAK 421 (922)
Q Consensus 342 ivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~ 421 (922)
|||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++++++++++++|++
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 002434 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501 (922)
Q Consensus 422 ~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 501 (922)
.++++++|.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+|
T Consensus 1347 ~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~I 1426 (1495)
T PLN03232 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVI 1426 (1495)
T ss_pred HcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred ecCcchhhccCEEEEEeCCeEEEecCHHHHhhcC-cHHHHHHHhHH
Q 002434 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEE 546 (922)
Q Consensus 502 tH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~-~~~~~l~~~~~ 546 (922)
|||++++++||+|+||++|+|+|.|+|+||++++ +.|+++++.+.
T Consensus 1427 AHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1427 AHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred eCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999886 59999987654
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.5e-74 Score=745.88 Aligned_cols=472 Identities=18% Similarity=0.192 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 50 EVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVN 129 (922)
Q Consensus 50 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~ 129 (922)
..+.....+.++...+...+|+|+++++...+++ .++|++++++++|++.+.+.+... ..+....+.+++++++++.+
T Consensus 142 ~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~ 219 (1490)
T TIGR01271 142 AIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWEL 219 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777788888899999999999998 589999999999999999976432 33334445555555665555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 002434 130 CWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 209 (922)
Q Consensus 130 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~ 209 (922)
..+.+++.++++++++.+..++.+++.+..++.+...+++.+.+.|.++||++||.+++|+.+.+++.+..++..+...+
T Consensus 220 ~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~ 299 (1490)
T TIGR01271 220 LEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRK 299 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777778888888888888899999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 002434 210 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLN-QAATNFYSFDQGRIAAYRLYEMI 288 (922)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~-~l~~~~~~~~~a~~a~~ri~~~l 288 (922)
......+...+...... .+.++.+++|.+.++ ++.+.+++++.++.++..++. .++..+..+.++.++++||.+++
T Consensus 300 ~~~~~~~~~~~~~~~~~--~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL 376 (1490)
T TIGR01271 300 IAYLRYFYSSAFFFSGF--FVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFL 376 (1490)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655443333322222 233445566666654 678888888777776666764 68888899999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCC-------------------------------CCCCcccceeEEecCC
Q 002434 289 SRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSR-------------------------------PEIPILSGFYLTVPAK 337 (922)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~-------------------------------~~~~vL~~isl~i~~G 337 (922)
..++...... ......|+++|++|.|+.. ..+++|+|+||+|++|
T Consensus 377 ~~~e~~~~~~----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G 452 (1490)
T TIGR01271 377 CKEEYKTLEY----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKG 452 (1490)
T ss_pred cCcccccccc----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCC
Confidence 8654321110 0112359999999999531 0136899999999999
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHH
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIE 417 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~ 417 (922)
++++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.||..++++++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999998 59999999999999999999999877778899
Q ss_pred HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCC
Q 002434 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLMLGR 496 (922)
Q Consensus 418 ~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~ 496 (922)
++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||++++|+|+||||||||||+++++.+.+ +++++.+++
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~ 599 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNK 599 (1490)
T ss_pred HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 567777899
Q ss_pred eEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 497 STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 497 t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
|+|+|||+++.++.||+|++|++|+|++.|+++++.+.++.|.+.+.
T Consensus 600 tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 600 TRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred eEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 99999999999999999999999999999999999987777776664
No 38
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.9e-76 Score=703.50 Aligned_cols=488 Identities=24% Similarity=0.292 Sum_probs=428.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE-KVGNYIH 114 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~-~~~~~i~ 114 (922)
++++.++..++.+++.++....+.++..++|.++|++++++|+.. .+...+++++|++.+++.+.. .+..++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~ 125 (544)
T TIGR01842 52 ALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR------GKIDGLQALRDLDQLRQFLTGPGLFAFFD 125 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC------ccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444555677888888899999999999999999999999832 255688999999999998876 3444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 002434 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKY 194 (922)
Q Consensus 115 ~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~ 194 (922)
.++.+ +.++++++++|++++++++..|+++++..+..++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+
T Consensus 126 ~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 204 (544)
T TIGR01842 126 APWMP-IYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTK 204 (544)
T ss_pred HHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHH
Confidence 44443 44567889999999998888888777777777777888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 195 SYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSF 274 (922)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 274 (922)
+|.+..++..+...+.....+....+...+..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~ 284 (544)
T TIGR01842 205 RWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQF 284 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877777777666666666666677788899999999999999999998888888888999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHH
Q 002434 275 DQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (922)
Q Consensus 275 ~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~ 354 (922)
++++.+.+|+.++++.+++.... ...+...+.|+++||+|+|+++ ++++|+|+||+++|||+++||||||||||||+
T Consensus 285 ~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~ 361 (544)
T TIGR01842 285 SGARQAYKRLNELLANYPSRDPA--MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLA 361 (544)
T ss_pred HHHHHHHHHHHHHHhCCccccCC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999999765443211 1122234679999999999743 35799999999999999999999999999999
Q ss_pred HHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhh
Q 002434 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (922)
Q Consensus 355 ~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~ 433 (922)
++|+|+|+|++|+|.+||+|+.+++.+++|++|+||||+|++|++|++|||.+++ ++++++++++++.++++++++++|
T Consensus 362 ~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 441 (544)
T TIGR01842 362 RLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLP 441 (544)
T ss_pred HHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999776 589999999999999999999999
Q ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccC
Q 002434 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNAD 512 (922)
Q Consensus 434 ~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D 512 (922)
+|+||.+||+|.+|||||||||+||||++++|++||||||||+||+++++.+.+.|+++. +++|+|+||||++.++.||
T Consensus 442 ~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d 521 (544)
T TIGR01842 442 DGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD 521 (544)
T ss_pred cccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999998875 6899999999999999999
Q ss_pred EEEEEeCCeEEEecCHHHHhh
Q 002434 513 YIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 513 ~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+|++|++|++++.|+|+|+++
T Consensus 522 ~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 522 KILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999875
No 39
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-78 Score=652.62 Aligned_cols=489 Identities=30% Similarity=0.424 Sum_probs=435.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 002434 52 SCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG-LAIAFVNC 130 (922)
Q Consensus 52 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~-li~~~~~~ 130 (922)
.++...++...+.+--+.|.|+.++++.|+-+ ..+|.+...+.....-|+..+...+...+..++-+... .++...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 45667888888999999999999999999998 58898888777777777777777677777666655443 44556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 002434 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (922)
Q Consensus 131 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~ 210 (922)
|+.+++.++++.+++++.+....+-....++..++..+++....+++-+.+++|.|+.|+.+..+|.+.++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999988888887777766666666777788889999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002434 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 290 (922)
....++.......+...........++..+..|++|.|+++..-.++...+.|++.+...+..+.+++.-.++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 76666655555555555666667778888999999999999888888888899999999999999999999999999987
Q ss_pred CCCCCCCC-CCCCC-CCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE
Q 002434 291 SSSTTNYD-GNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (922)
Q Consensus 291 ~~~~~~~~-~~~~~-~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I 368 (922)
+.+..+.. ..+.. ...|.+.|+||+|.|. +.+++|+|+||++++|+++|+|||||+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 75543221 12222 3357899999999996 45789999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCC
Q 002434 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (922)
Q Consensus 369 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~L 447 (922)
.+||+|+++...+++|+.||.||||..||++|+..||.||+ +++++|+..+++.+++++||+.+|+||+|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecC
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~ 527 (922)
|||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+++|+++|+|||+++-+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcHHHHHHH
Q 002434 528 HDELLATGDLYAELLK 543 (922)
Q Consensus 528 ~~eL~~~~~~~~~l~~ 543 (922)
|+||++.+|.|++||.
T Consensus 481 h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHHcCChHHHHhc
Confidence 9999999999999985
No 40
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.9e-73 Score=733.55 Aligned_cols=705 Identities=15% Similarity=0.162 Sum_probs=505.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 50 EVSCWILTGERQTAVIRSRYVQVLLNQDMSFFD--TYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAF 127 (922)
Q Consensus 50 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~--~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~ 127 (922)
+.+...+.+.++...+...+|+|+++++...+. + .++|++++.+++|++.+++++. .+..++...+.+++++++++
T Consensus 305 ~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~-~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~ 382 (1560)
T PTZ00243 305 FYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPD-MNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLS 382 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCC-CCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888999999999999988775 3 3689999999999999999873 34455555556666666655
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 002434 128 VNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYG 207 (922)
Q Consensus 128 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~ 207 (922)
.+..+.+++.++++++++.+..++.++..+..++..+..++..+.+.|.++|||+||.+++|+.+.+++.+..++..+..
T Consensus 383 ~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l 462 (1560)
T PTZ00243 383 RLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYL 462 (1560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455566666665566656666677777777777888899999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 208 ILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEM 287 (922)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~ 287 (922)
.+......+...+......+..++ .++++.+.++.++++.+++++.++..+..|+..++..+..+.++.++++||.++
T Consensus 463 ~~~~~~~~~~~~~~~~~p~l~~~~--~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~f 540 (1560)
T PTZ00243 463 RDVQLARVATSFVNNATPTLMIAV--VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTF 540 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666554444444433333 346777889999999999999988888899999999999999999999999999
Q ss_pred hccCCCCC----C--C---------C--C-------C--------C---------------------------CCCCccc
Q 002434 288 ISRSSSTT----N--Y---------D--G-------N--------T---------------------------LPSVHGN 308 (922)
Q Consensus 288 l~~~~~~~----~--~---------~--~-------~--------~---------------------------~~~~~g~ 308 (922)
++.++... + . . . . . .....+.
T Consensus 541 L~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1560)
T PTZ00243 541 LECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPS 620 (1560)
T ss_pred HcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 97643100 0 0 0 0 0 0 0001134
Q ss_pred EEEEeEEEEeCCC-------------------------------------CCCCcccceeEEecCCCEEEEeCCCCCcHH
Q 002434 309 IEFRNVYFSYLSR-------------------------------------PEIPILSGFYLTVPAKKAVALVGRNGSGKS 351 (922)
Q Consensus 309 i~~~~v~f~y~~~-------------------------------------~~~~vL~~isl~i~~G~~vaivG~sGsGKS 351 (922)
+.++|++|.++.. +++++|+|+||+|++|++++|+||||||||
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKS 700 (1560)
T PTZ00243 621 VVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKS 700 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHH
Confidence 7788887765310 134689999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHH
Q 002434 352 SIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 352 Tl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
||+++|+|+++|++|+|.++ ++|+||+|+|++|++||+|||.++...+.+++.++++.|+++++++.
T Consensus 701 TLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 701 TLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999874 37999999999999999999999987777789999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCCeEEEEecCcchhhc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLMLGRSTIIIARRLSLIRN 510 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~ 510 (922)
+|+|++|.+|++|.+|||||||||+||||++.+|+|||||||||+||+++++.+.+ ++....+++|+|+|||+++.++.
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887765 45555578999999999999999
Q ss_pred cCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccCCCc
Q 002434 511 ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPS 590 (922)
Q Consensus 511 ~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (922)
||+|++|++|+++++|+++|+++. +.|.++.......... .. ...... .
T Consensus 848 ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~--------~~-------~~~~~~------~--------- 896 (1560)
T PTZ00243 848 ADYVVALGDGRVEFSGSSADFMRT-SLYATLAAELKENKDS--------KE-------GDADAE------V--------- 896 (1560)
T ss_pred CCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHhhcccccc--------cc-------cccccc------c---------
Confidence 999999999999999999999874 4566665432111000 00 000000 0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCCCCC
Q 002434 591 LQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESP 670 (922)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (922)
...+.+.. ... .. .. .... +. ..
T Consensus 897 --------------~~~~~~~~-~~~------------~~--~~----~~~~----------------------~~--~~ 919 (1560)
T PTZ00243 897 --------------AEVDAAPG-GAV------------DH--EP----PVAK----------------------QE--GN 919 (1560)
T ss_pred --------------cccccccc-ccc------------cc--cc----cccc----------------------cc--cc
Confidence 00000000 000 00 00 0000 00 00
Q ss_pred CCCCCCCCCccccccCcccCCCCCCCCCCCcchhhhhhhcC---CcchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHH
Q 002434 671 ISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQ---KAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLL 747 (922)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~ 747 (922)
.. ... . . . .+.......+++++.. .+..|+.|++.... +.+++..++..++.. .
T Consensus 920 ~~--------~~~----~-~---~-~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~l~~~~~~~-----~ 976 (1560)
T PTZ00243 920 AE--------GGD----G-A---A-LDAAAGRLMTREEKASGSVPWSTYVAYLRFCGG-LHAAGFVLATFAVTE-----L 976 (1560)
T ss_pred cc--------ccc----c-c---c-cccccchhhhHHHHhcCcccHHHHHHHHHHhhh-HHHHHHHHHHHHHHH-----H
Confidence 00 000 0 0 0 0000001111111222 23344444443221 111111111111111 1
Q ss_pred HHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 002434 748 AYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEE 827 (922)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~ 827 (922)
...+..++-.+|..+. .......|..+|++++++.+++.+++.+.....+.+.++++|+++|++++++|++||| +
T Consensus 977 ~~~~~~~wl~~w~~~~---~~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~ 1051 (1560)
T PTZ00243 977 VTVSSGVWLSMWSTRS---FKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--T 1051 (1560)
T ss_pred HHHHHHHHHHHhcccc---cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--C
Confidence 1122223333343321 1122346777888888888888888888888888999999999999999999999999 8
Q ss_pred CCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 828 NSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLS 890 (922)
Q Consensus 828 n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~ 890 (922)
+|+|+|+|||++|++.+|..++..+..++..++++++++++.++..|.+.+ +++|++++.
T Consensus 1052 ~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~---~~i~~~~~~ 1111 (1560)
T PTZ00243 1052 TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV---ALVPCGYLY 1111 (1560)
T ss_pred CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985443 344444333
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-74 Score=750.16 Aligned_cols=498 Identities=17% Similarity=0.200 Sum_probs=406.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (922)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~ 122 (922)
..++.+++.+++...+.+...++|.++++++++.|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 002434 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (922)
Q Consensus 123 li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~ 202 (922)
++++++++|.++++++.++.+++++..++.+..+...+......+...+.+.|+++|+.+||+|++++.+.+++.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99888888876554333222222222222222233333334455667799999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 203 TLRYGILISLVQGLGLGFTYGLAICSC--ALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (922)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a 280 (922)
..+..........+......++..+.. +++++++. ..+..|.+..++.+.+....++..+...+..+..++.|
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444333333333222222211111 11122222 22344555444445555556677778888889999999
Q ss_pred HHHHHHHhccCCCCCCC-CC--------------CC---CCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEE
Q 002434 281 AYRLYEMISRSSSTTNY-DG--------------NT---LPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342 (922)
Q Consensus 281 ~~ri~~~l~~~~~~~~~-~~--------------~~---~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vai 342 (922)
.+|+.++++.+++.... .. .. ..+..|.|+|+||+|+|++. .+++|+|+||+|+|||++||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEE
Confidence 99999999766442211 00 00 11345789999999999753 46899999999999999999
Q ss_pred eCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHH
Q 002434 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (922)
Q Consensus 343 vG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~ 422 (922)
||+||||||||+++|+|+++ .+|+|+|||+|+++++.+++|++|+||||+|.||+|||||||.+...++++++++|++.
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999998878899999999999
Q ss_pred HHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 002434 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (922)
Q Consensus 423 ~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 502 (922)
+++++++.++|+|+||.|||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHhh
Q 002434 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548 (922)
Q Consensus 503 H~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~~ 548 (922)
||++++.+||+|+||++|+|+|.|+|++|+++++.|+++++.+...
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 9999999999999999999999999999998889999999876543
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-75 Score=716.79 Aligned_cols=503 Identities=22% Similarity=0.270 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (922)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~ 112 (922)
...+.+++++..++.+++.+.+...+.+.+++|++++++++++.|++|||. +++|+++||+++|++.+++.+...+..+
T Consensus 861 ~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~ 939 (1381)
T KOG0054|consen 861 LGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFF 939 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHH
Confidence 344556667777777888889999999999999999999999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHhcc
Q 002434 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDA----YAEAASIAEQAVSYIRTLYAFTN 188 (922)
Q Consensus 113 i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~gi~~ika~~~ 188 (922)
++.++.+++.++++.+..|++.++++ |+.+ +.+++.++..+..++.++. .+-..+++.|+++|+.|||+|+.
T Consensus 940 ~~~~~~~l~~~~vi~~~~P~fli~~~---pl~v-~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 940 LQSLLNVLGILVVISYVTPWFLIAII---PLGV-IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHH---HHHH-HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc
Confidence 99999999998888888887655444 3332 2334445555555555443 33446899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-ccHHHHHHHHHHHHHHHHHHHH
Q 002434 189 ETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NK-AHGGEIVTALFAVILSGLGLNQ 266 (922)
Q Consensus 189 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~-g~-lt~g~l~~~~~~~~~~~~~l~~ 266 (922)
|+++.+++....+...+..+......-|..--..++. .++++..+...+.. +. .++|.+...+.+.+.....++.
T Consensus 1016 ~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig---~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~ 1092 (1381)
T KOG0054|consen 1016 EERFIQENDELIDENSRAFFLSISANRWLAVRLELLG---NLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQW 1092 (1381)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999888887766555444333322222222 22222233333332 22 6678887777787777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCC--CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEE
Q 002434 267 AATNFYSFDQGRIAAYRLYEMISRSSSTT--NYDG--NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342 (922)
Q Consensus 267 l~~~~~~~~~a~~a~~ri~~~l~~~~~~~--~~~~--~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vai 342 (922)
+......+.....|.+|+.++.+.++|.+ .+.. ++..|.+|+|+|+|++.+|.++ .++||+||||+|+|||+|||
T Consensus 1093 ~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1093 LVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEE
Confidence 88888899999999999999999765511 1111 2223568999999999999653 46899999999999999999
Q ss_pred eCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHH
Q 002434 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (922)
Q Consensus 343 vG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~ 422 (922)
||++|||||||+++|.|+.+|.+|+|.|||+|+.++.+++||++++++||||.||+||+|.||....+++|+++|+|++.
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~ 1251 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALER 1251 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 002434 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (922)
Q Consensus 423 ~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 502 (922)
|++.+++.++|+|+|+.|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|...||+.|++..+++|+|.|+
T Consensus 1252 ~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIA 1331 (1381)
T KOG0054|consen 1252 CQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIA 1331 (1381)
T ss_pred hChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHHHh
Q 002434 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKC 544 (922)
Q Consensus 503 H~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~~~ 544 (922)
||++++.+||||+|||+|+|+|.|+|.+|+++ ++.|++++..
T Consensus 1332 HRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1332 HRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred eccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999987 5677655543
No 43
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.4e-72 Score=665.64 Aligned_cols=478 Identities=19% Similarity=0.151 Sum_probs=405.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
++.+.++.+++.++..++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+.. +..++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~ 136 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHH
Confidence 334455566778888899999999999999999999999999999998 58999999999999999998864 7777888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET--LAK 193 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~--~~~ 193 (922)
++.+++.++++++++|.+++++++.+|+.+++..+..++.++...+.++..++.++.+.|.+.|++++|+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 888888899999999999999988888877777777777777778888888999999999999999999999954 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~ 273 (922)
+++.+..++..+...+..........+..++..+..++.+++|++. |.++.|.+++++.+......|+..+...+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788877777776665554444333333333333344444555443 7899999999988888888999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCC--CC-C-CC-CC----CCCCCcccEEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEE
Q 002434 274 FDQGRIAAYRLYEMISRSSS--TT-N-YD-GN----TLPSVHGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVAL 342 (922)
Q Consensus 274 ~~~a~~a~~ri~~~l~~~~~--~~-~-~~-~~----~~~~~~g~i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vai 342 (922)
+++++.+++|+.++++.+.+ .. + .+ +. +.....+.|+++||+|+|++.+ ++++|+|+||++++||++||
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ai 373 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEE
Confidence 99999999999999763211 11 0 11 00 1112245799999999997431 23699999999999999999
Q ss_pred eCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHH
Q 002434 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (922)
Q Consensus 343 vG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~ 422 (922)
|||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++++||+||+++|++|+++|+ ..++++++++++++.
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~ 451 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQR 451 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 346788999999999
Q ss_pred HHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-HH-cCCCeEEE
Q 002434 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LL-MLGRSTII 500 (922)
Q Consensus 423 ~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~-~~-~~~~t~i~ 500 (922)
+++++++..+|+||||. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .. .+++|+|+
T Consensus 452 ~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 452 LEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred cCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999995 7899999999999999999999999999999999999999988764 34 46899999
Q ss_pred EecCcchhhccCEEEEEeCCeEEEe
Q 002434 501 IARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 501 itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
||||+++++.||+|++|++|+|+|.
T Consensus 527 isH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 527 ISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999874
No 44
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.7e-72 Score=613.96 Aligned_cols=486 Identities=23% Similarity=0.311 Sum_probs=436.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (922)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i 120 (922)
+...++.+++.....+.+.++..++..++|....+.+..-- ..|+=.+- -+|.++++++++..-...+.+...+.
T Consensus 74 ~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~----~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P 148 (580)
T COG4618 74 AFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR----GSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMP 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc----CCCccccc-hhhHHHHHHHHcCCCcchhcCCchHH
Confidence 33445677888888999999999999999999987666432 33433333 37999999999987777777777788
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 002434 121 SGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSL 200 (922)
Q Consensus 121 ~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~ 200 (922)
+.++++|.+++++.++.++...+++.+.++..+..++..++..+...+.+...+-+..|.++|++.|+.....++|.+..
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 88889999999999999998888888888888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 201 QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (922)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a 280 (922)
..+.....+.+-..+...+++..+-++.+..++.+|+|++++|++|+|.+++....+--...|+-+....|.++..++.|
T Consensus 229 ~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s 308 (580)
T COG4618 229 AAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQS 308 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 99888888887777788888888889999999999999999999999999886655556667899999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 281 AYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 281 ~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.+|+.+++...+... ...+.|..+|.+.++++++.-|+ .++|+|+|+||++++||-+|||||||||||||.++|.|.
T Consensus 309 ~~Rl~~lL~~~p~~~--~~m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 309 YKRLNELLAELPAAA--ERMPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred HHHHHHHHHhCcccc--CCCCCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc
Confidence 999999998765433 23455667889999999997664 467999999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh-cCcCCCHHHHHHHHHHHHHHHhHHHhhccchhh
Q 002434 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439 (922)
Q Consensus 361 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 439 (922)
++|.+|.|++||-|+++++.+.+-++|||.||+..||+|||.|||+ |+++.+++.+.+|++.++.||.|.+||+||||.
T Consensus 386 w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~ 465 (580)
T COG4618 386 WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR 465 (580)
T ss_pred cccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCc
Confidence 9999999999999999999999999999999999999999999998 555899999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEe
Q 002434 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 440 vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
|||+|..|||||||||+||||+|.||.+++||||-|+||.+.|+.+.++|...+ +|.|+|+||||++.+..+|+|++|+
T Consensus 466 iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~ 545 (580)
T COG4618 466 IGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ 545 (580)
T ss_pred cCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec
Confidence 999999999999999999999999999999999999999999999999998775 6899999999999999999999999
Q ss_pred CCeEEEecCHHHHhhc
Q 002434 519 EGRLFEMGTHDELLAT 534 (922)
Q Consensus 519 ~G~i~~~G~~~eL~~~ 534 (922)
+|++...|+.+|.+++
T Consensus 546 ~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 546 DGRIAAFGPREEVLAK 561 (580)
T ss_pred CChHHhcCCHHHHHHH
Confidence 9999999999998764
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-67 Score=627.95 Aligned_cols=473 Identities=18% Similarity=0.205 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 42 GVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFS 121 (922)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~ 121 (922)
+.+++.+++.++..+++.++..++|.++|++++++|+++|++ .++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 60 LLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334566778888889999999999999999999999999998 6899999999999999998765 46778888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHH
Q 002434 122 GLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE---TLAKYSYAT 198 (922)
Q Consensus 122 ~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e---~~~~~~~~~ 198 (922)
.++++++++|.+++++++++|+.+++...+.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999999999999888888888888888888888899999999999999999995 4443 345677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (922)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~ 278 (922)
..++..+...+..........+...+..+..++.+++++.. ..+ +.+.+..+..+......|+..+...+..+++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666655555444333322222222222222223333221 112 233333333333334568889999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh
Q 002434 279 IAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (922)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 358 (922)
.+.+|+.++++.+.+.+....... +..+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPRPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHHHhcccccccccccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999998765432211111111 11357999999999973 347999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchh
Q 002434 359 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438 (922)
Q Consensus 359 g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t 438 (922)
|+|+|++|+|.+||+|+++++.+++|++|+||+||+.+|++|++|| +.+.++++++++++.+++.+++. +++|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE-LEDGR-- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-ccccC--
Confidence 9999999999999999999999999999999999999999999999 44667777777777766655543 23331
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEE
Q 002434 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 439 ~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~v 516 (922)
.+|.+|||||||||+||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++
T Consensus 445 ---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521 (547)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence 2489999999999999999999999999999999999999999999987553 48999999999999999999999
Q ss_pred EeCCeEEEe-cCHHHHh
Q 002434 517 MDEGRLFEM-GTHDELL 532 (922)
Q Consensus 517 l~~G~i~~~-G~~~eL~ 532 (922)
|++|+++|. |++.+-.
T Consensus 522 l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 522 MRNGQLSELTGEERDAA 538 (547)
T ss_pred EECCEEEEecCCchhhh
Confidence 999999987 5555443
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.3e-62 Score=591.37 Aligned_cols=462 Identities=14% Similarity=0.079 Sum_probs=390.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (922)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~ 118 (922)
+.+...+..++..++......++..++|++++++....+..+||+ ++|++.+|+++|++.+.+.+...+..++..++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ 225 (659)
T TIGR00954 148 ASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILD 225 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666777888889999999999988899999985 679999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Q 002434 119 FFSGLAIAFV-NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (922)
Q Consensus 119 ~i~~li~~~~-~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~ 197 (922)
+++.++.++. ++|.+++++++..|+.+++...+.+.+.+...+.++..++..+...|.++|+++||+|+.|+.+.+++.
T Consensus 226 ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~ 305 (659)
T TIGR00954 226 VILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVM 305 (659)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 9888887776 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCccHHHHHH-HHHH---HHHHHHHHHH
Q 002434 198 TSLQATLRYGILISLVQGLGLGFTYGLAIC--SCALQLWVGRFLVT-H----NKAHGGEIVT-ALFA---VILSGLGLNQ 266 (922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----g~lt~g~l~~-~~~~---~~~~~~~l~~ 266 (922)
+..++..+...+.....+....+..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +.....|+..
T Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~ 385 (659)
T TIGR00954 306 SSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGR 385 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888887777776666432 23333334443332 2 7889888766 3333 2334668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCC--------CCC--C--------------CCCCCCcccEEEEeEEEEeCCCC
Q 002434 267 AATNFYSFDQGRIAAYRLYEMISRSSSTT--------NYD--G--------------NTLPSVHGNIEFRNVYFSYLSRP 322 (922)
Q Consensus 267 l~~~~~~~~~a~~a~~ri~~~l~~~~~~~--------~~~--~--------------~~~~~~~g~i~~~~v~f~y~~~~ 322 (922)
+...+..++++.++.+|++++++.+++.. ..+ + .......+.|+++||+|+|++
T Consensus 386 l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~-- 463 (659)
T TIGR00954 386 LMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN-- 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--
Confidence 99999999999999999999997532210 000 0 001112356999999999963
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHH
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 402 (922)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++|+||||+|++|++|++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHH
Confidence 34799999999999999999999999999999999999999999999874 5689999999999999999
Q ss_pred HHHhcCc--------CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCC
Q 002434 403 DNIAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (922)
Q Consensus 403 eNi~~~~--------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpt 474 (922)
|||.++. +.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|+++||||||
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpt 610 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999873 3567889999999999999887 999999986 56799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 475 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
|+||+++++.+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 611 s~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 611 SAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999763 8999999999999999999999973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-51 Score=447.74 Aligned_cols=237 Identities=21% Similarity=0.342 Sum_probs=223.0
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
|.|+++|++++|+.. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999632 4579999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
|+||||+|.+|++|+++|+.+....++++++++++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997544567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
||||||||++||+.+++.+++.|++..+++|+|+||||+++++.||||++|++|++++.|++++|++..+.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999999999998878899999999999999999999999999999999999999888888877654
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-51 Score=409.96 Aligned_cols=213 Identities=27% Similarity=0.460 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC-CCCHHHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-NLKLEWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~ 386 (922)
-|+++||+++|. +..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999994 567999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc----CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+|+|+|+..||+ .|+.||+.++. ..+.++. .+.++++++.+.....| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 99999999984 3444433 33445556666555555 5799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||||..+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998886 58899999999999988 999999999999999999999876
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-49 Score=412.67 Aligned_cols=216 Identities=31% Similarity=0.489 Sum_probs=188.9
Q ss_pred EEEEeEEEEeCCC--CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HH
Q 002434 309 IEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WL 383 (922)
Q Consensus 309 i~~~~v~f~y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~l 383 (922)
|++++|++.|+.. +...+|+||||+|++||++||+|+||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 135699999999999999999999999999999999999999999999999998887755 45
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
|++||+++|++.|++ .||.+|++|.- ..++++ +.+.++.+|+.++... ...+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-----------yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-----------YPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-----------CchhcCcchhhHH
Confidence 789999999999997 89999999974 344443 3444555555544443 4468999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||..+|+|||.|||||||||+|.+.|.+.|+++. -|-|+++|||.++.++. |||+.||++|+|+|+|+..|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998874 48899999999999998 9999999999999999999998
Q ss_pred hcC
Q 002434 533 ATG 535 (922)
Q Consensus 533 ~~~ 535 (922)
.+.
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 763
No 50
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-49 Score=399.88 Aligned_cols=213 Identities=32% Similarity=0.509 Sum_probs=190.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+|+|||++|. +..+++|+||+|++||++.++|||||||||++++|.|+++|++|+|++||.++++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999995 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHH----HHHHHHHHHHH--HhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAH--TFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~--~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
||-|..-||+ .||.|||.+-. ..++++ +.+.++..+++ ++..+.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999995 99999999753 344444 45555566653 3555554 57999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchh-hccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~-~~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|||..+|+||+||||++||||.++..+++-+.++.+ ++|+|+|||+++++ +.+|||.+|++|+|++.|+|++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999877643 89999999999875 569999999999999999999999863
No 51
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-48 Score=428.86 Aligned_cols=222 Identities=30% Similarity=0.447 Sum_probs=196.5
Q ss_pred CcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCC--C
Q 002434 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIK--N 377 (922)
Q Consensus 305 ~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~--~ 377 (922)
..+.|+++|++++|++ ...++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++. .
T Consensus 77 ~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3467999999999963 23579999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHHhhcceEEecCCCCccccHHHHHhcCc---CCCHHHH-----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH
Q 002434 378 LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQI-----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 378 ~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~~~~~-----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG 449 (922)
.+...+|+.++||||+|++|++|++|||.|+. ..++++. .++++.++ |++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 45567899999999999999999999999864 2344433 33444444 345567889999999999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||||++||||++++|+||||||||++||+++...+.+.|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998888999999999999987 999999999999999999
Q ss_pred HHHhhc
Q 002434 529 DELLAT 534 (922)
Q Consensus 529 ~eL~~~ 534 (922)
+++...
T Consensus 309 ~~l~~~ 314 (329)
T PRK14257 309 KTIFIH 314 (329)
T ss_pred HHHhcC
Confidence 999864
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=389.03 Aligned_cols=217 Identities=32% Similarity=0.515 Sum_probs=197.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC-----cEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-----GEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~-----G~I~i~g~~i~~--~~~ 380 (922)
.++++|+++.|. ++.+|+|||++|++++++|++|||||||||+++++.|+.+... |+|.++|+|+.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999995 5679999999999999999999999999999999999999886 999999999976 578
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
..+|++||.|+|.|.-|+.||+||+.||. ... ++-++++++.|+|++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 99999999999999999999999999994 222 3446778888999887753 245668889999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||.+.-+.+ +|+..++..|+++|.|+.+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999987766 9999999999999999999987
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 65
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.1e-47 Score=406.76 Aligned_cols=234 Identities=46% Similarity=0.748 Sum_probs=216.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999632 357999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
|++|++.+|+.|++|||.++. ..+.+++.+.++..++.+++..+|.|+++.....+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999865 3456667777777888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|+.+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 9999999999999999999999988778999999999999988999999999999999999999988888877653
No 54
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-46 Score=405.29 Aligned_cols=240 Identities=31% Similarity=0.469 Sum_probs=220.0
Q ss_pred CCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH
Q 002434 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 304 ~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l 383 (922)
...+.|+++|++++|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999642 3569999999999999999999999999999999999999999999999999999888889
Q ss_pred hhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 384 RSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|+.|+||+|++.+|++|++||+.+......+++.++++..++.+.+..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754445667788888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHH
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELL 542 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~ 542 (922)
+|++|||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999888778999999999999989999999999999999999999875 45677766
Q ss_pred Hh
Q 002434 543 KC 544 (922)
Q Consensus 543 ~~ 544 (922)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 53
No 55
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-46 Score=396.51 Aligned_cols=233 Identities=51% Similarity=0.773 Sum_probs=214.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999953 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
|++|++.+|+.|++||+.++. ..+++++.++++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4556677778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHH
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~ 543 (922)
|||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......|+.++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHh
Confidence 9999999999999999999999888778899999999999988999999999999999999998877666665543
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-46 Score=395.78 Aligned_cols=231 Identities=49% Similarity=0.812 Sum_probs=212.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+++ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 236999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
|++|++.+|+.|++||+.++. ....+++.+.++..++.+++..+|.|+++.++.....||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4456677777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHH
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~ 540 (922)
|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.|+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 9999999999999999999999988788999999999999988999999999999999999998877655543
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-46 Score=394.17 Aligned_cols=226 Identities=49% Similarity=0.774 Sum_probs=210.0
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|+++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999952 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
++|++|++.+|++|++||+.++. ....+++.++++..++.+++..+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876 44567788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++|||||||++||+.++..+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999998887654
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.2e-46 Score=391.99 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=206.9
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
|.|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999632 3579999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
++|++|++.+|+.|++|||.+......+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998776667788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecC
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~ 527 (922)
++||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877889999999999998999999999999998876
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-45 Score=395.24 Aligned_cols=234 Identities=59% Similarity=0.939 Sum_probs=212.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999996433357999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
|++|++.+|+.|++||+.++. ....+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 3455666777777788899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHH
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~ 542 (922)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++......++.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999988777899999999999998999999999999999999999877655554443
No 60
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=377.12 Aligned_cols=471 Identities=19% Similarity=0.196 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (922)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~ 114 (922)
++.++....++.+.+.....+..++++..++|.++.++++..|+.-+++ -++++++.++++|+..|. +-...++.+.+
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHH
Confidence 4444444455566667777788999999999999999999999999999 589999999999999997 44556777888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH--H
Q 002434 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETL--A 192 (922)
Q Consensus 115 ~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~--~ 192 (922)
..+.++++.+.+.++|+++.++.++.+.+.++...+......+.....++..+++.+..+..++|.++++......+ .
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 88889999999999999998888877777777777777777777778888889999999999999999987643322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 272 (922)
.+.|...-+...+..............+.+.+.+....+.||+.... +--+.....++...+++...|+.++...+.
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 22333322222222211111111112222333333333444443221 111222233333344455668999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 273 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
.+.+|++|.++|.++-..|....-......|+ -..|+++||.|.|+.. ..-+..||++|++||.|-|+|.|||||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADFPRPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHH
Confidence 99999999999998765443222111122222 2359999999999742 36688999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFIS 430 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~ 430 (922)
++++|+|+|.|++|+|++||.++..-+++++|+-++-|+-|-+||+.++ |. .++++.+..-++...+....
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt- 437 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT- 437 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-
Confidence 9999999999999999999999999999999999999999999998654 22 36777666655554443322
Q ss_pred HhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEecCcchh
Q 002434 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLI 508 (922)
Q Consensus 431 ~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~t~i~itH~l~~~ 508 (922)
++.+|--+ ...||-|||.|+|+--|++-+-||++|||=-+--||.-++.+.+.+--. .+|||++.|||+-.+.
T Consensus 438 sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 438 SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 12222111 2579999999999999999999999999999999999999997765333 3599999999999999
Q ss_pred hccCEEEEEeCCeEEEe
Q 002434 509 RNADYIAVMDEGRLFEM 525 (922)
Q Consensus 509 ~~~D~i~vl~~G~i~~~ 525 (922)
..|||++.|++|+++|.
T Consensus 513 ~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 513 IHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhHHHHHHHhcCceeec
Confidence 99999999999999984
No 61
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.5e-46 Score=392.68 Aligned_cols=213 Identities=30% Similarity=0.493 Sum_probs=191.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999995 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCC-CccccHHHHHhcCc-C-------CC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 388 GLVTQEPA-LLSLSIRDNIAYGR-D-------AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 388 ~~v~Q~~~-lf~~ti~eNi~~~~-~-------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
|||||++. -|..||+|-+.+|+ + .+ .+.+.++++.+++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 99999975 56799999999996 2 12 2346677888877665433 2357999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchh-hccCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
.|||||.++|+||+||||||+||...+.++++.++++. +++|+|++.|+++.+ +.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999886 479999999999875 569999999999999999999988
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 65
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-46 Score=403.80 Aligned_cols=211 Identities=30% Similarity=0.486 Sum_probs=189.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|++ ..+|+|+||+|++||+++|+|||||||||++++|+|+.+|++|+|.+||.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 5899999999953 22999999999999999999999999999999999999999999999999999999875 689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|+|+|+..||+ .||+|||.|+-. .+ ++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 899999999852 22 456677777777777777666 469999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||+++|++++||||+|+||++.+..+..-|+++.+ +.|+|.|||+...+.. +|||+||++|+|.+.|++.|+..+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999999888887653 6899999999877655 999999999999999999999865
No 63
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.1e-44 Score=382.84 Aligned_cols=219 Identities=42% Similarity=0.658 Sum_probs=201.4
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
++|+++|+++.|++. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999632 3569999999999999999999999999999999999999999999999999988777778889
Q ss_pred ceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
++|++|++.+|..|++||+.++. ..+.+++.+.++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999999875 34566778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEec
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G 526 (922)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999887668999999999988889999999999998764
No 64
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-45 Score=370.03 Aligned_cols=217 Identities=33% Similarity=0.506 Sum_probs=189.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 384 (922)
-|++++|+++|. ++.|++||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 599999999994 56799999999999999999999999999999999999999999999999999998875 468
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHH----HHHHHHHh-HHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAA----KIAHAHTF-ISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~----~~~~l~~~-i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
+++|+++|...||+ .||+||+.|-- ..+++.+++.+ +.+||... .+. -...||||+++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHHHH
Confidence 99999999999996 89999999852 45566655432 33444333 222 345799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
+|||||+.-||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++++.. ||||+++.||+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988754 8899999999998876 899999999999999999999
Q ss_pred hhcCcHH
Q 002434 532 LATGDLY 538 (922)
Q Consensus 532 ~~~~~~~ 538 (922)
.+.+..|
T Consensus 234 ~~sd~P~ 240 (263)
T COG1127 234 LASDDPW 240 (263)
T ss_pred HhCCCHH
Confidence 9876544
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6e-45 Score=406.08 Aligned_cols=215 Identities=29% Similarity=0.446 Sum_probs=186.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 384 (922)
|+++||+++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
++|+||+|++.+|+ .|++||+.++. ..+.+ ++.++++..++.+.. .....+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999995 89999999863 22332 334445555444333 3445689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999866 99999999999999999999976
Q ss_pred c
Q 002434 534 T 534 (922)
Q Consensus 534 ~ 534 (922)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 66
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=378.65 Aligned_cols=197 Identities=30% Similarity=0.462 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999963 67999999999999999999999999999999999999999999999999885443 379
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcCC---C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRDA---T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.||+ -||+||+.++-+. + .++..+.++.+|+.+|-...| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 8999999998632 2 335667777777777766666 469999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeC--CeEE
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDE--GRLF 523 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~--G~i~ 523 (922)
||+.+|+||+||||++|||+.|+..+++.+.++. .++|+++|||+++++- -+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999887764 4699999999998765 4999999999 4453
No 67
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-45 Score=401.63 Aligned_cols=212 Identities=30% Similarity=0.513 Sum_probs=190.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|. +..+++|+||+|++||+++|+|||||||||++++|+||.+|++|+|.+||+|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999995 56899999999999999999999999999999999999999999999999999999886 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC----CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
++|+|+-.||+ .||+|||.||-. ..+ +++.++++.+++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 999999999953 232 36677777777777665555 57999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchh-hccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|||..+|++||||||.||||.+-+..++.-++++. .|.|.|+|||+-+.. ..+|||+||++|+|.+.|+++|+....
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999988887764 489999999998765 569999999999999999999998763
No 68
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=399.03 Aligned_cols=221 Identities=23% Similarity=0.434 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC-------
Q 002434 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL------- 378 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~------- 378 (922)
-|+++|++|+|+... +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999996421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCC
Q 002434 379 ---------KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRA 443 (922)
Q Consensus 379 ---------~~~~lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~ 443 (922)
+...+|++|+||+|+| .+|+.|++|||.++. ..+.++..+ . ..+.+..+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567889999999998 689999999999874 233333322 1 12334443 453 456788
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchh-hccCEEEEEeCCe
Q 002434 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVMDEGR 521 (922)
Q Consensus 444 G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~-~~~D~i~vl~~G~ 521 (922)
+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764 588999999999987 4599999999999
Q ss_pred EEEecCHHHHhhcC
Q 002434 522 LFEMGTHDELLATG 535 (922)
Q Consensus 522 i~~~G~~~eL~~~~ 535 (922)
|++.|+++++....
T Consensus 254 i~~~g~~~~~~~~~ 267 (320)
T PRK13631 254 ILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEeCCHHHHhcCH
Confidence 99999999987653
No 69
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-44 Score=372.52 Aligned_cols=206 Identities=32% Similarity=0.466 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---H-
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L- 383 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l- 383 (922)
++++||++.|.... ..++|+++||+|++||++||+||||||||||+++|.|+..|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 246999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcC----cCCC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYG----RDAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~----~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
|++||||+|+..|++ .|++|||.+. .... .+...+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 567999999999985 8999999953 2111 223333344334432222 134568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEE
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~ 524 (922)
||||||+.+|+|++.||||++||.++.+.|++.++++. .|+|+|+|||+......|||++.|+||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998884 3789999999999999999999999999543
No 70
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.8e-45 Score=353.06 Aligned_cols=210 Identities=28% Similarity=0.438 Sum_probs=189.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|.+++|.|+|... ==.++++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5688999999532 1368999999999999999999999999999999999999999999999888775 35799
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC-------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
.++||..||. -||.+||.+|.. ...++++.++..+|+..+.++||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 999999999962 245678899999999999999996 599999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcCc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~~ 536 (922)
++|+-|||+||||+|+|||.-+.++...+.++. ++.|+++|||+++.++. +|+++++++|||.++|..+++++..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999888775 47899999999998876 99999999999999999999887543
No 71
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-44 Score=381.65 Aligned_cols=214 Identities=34% Similarity=0.560 Sum_probs=192.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC-CCCHHHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-NLKLEWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~ 386 (922)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999754 68999999999999999999999999999999999999999999999999998 4888999999
Q ss_pred ceEEecCC--CCccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 387 i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
||||+|+| .+|..||.|.++||. ..+.++ +.++++.+++.++... ...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHh
Confidence 99999999 689999999999995 355544 4556666666655333 346799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|++.|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999877 999999999999999999988765
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-44 Score=385.17 Aligned_cols=216 Identities=31% Similarity=0.472 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH---HHHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 385 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 57899999995 3469999999999999999999999999999999999999999999999999987764 56788
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc----CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR----DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
.|+||+|++.+|+ .|++||+.++. ..+.++ +.++++..+ +.........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVG-----------LRGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHH
Confidence 9999999999997 59999998763 123332 223333333 323334445689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
||||++++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7899999999998865 99999999999999999999876
Q ss_pred cCcHH
Q 002434 534 TGDLY 538 (922)
Q Consensus 534 ~~~~~ 538 (922)
....|
T Consensus 227 ~~~~~ 231 (235)
T cd03261 227 SDDPL 231 (235)
T ss_pred CCChh
Confidence 54433
No 73
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.3e-44 Score=379.75 Aligned_cols=218 Identities=45% Similarity=0.742 Sum_probs=197.1
Q ss_pred CcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHh
Q 002434 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 305 ~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 384 (922)
..+.|+++|++++|+++.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35679999999999743234699999999999999999999999999999999999999999999999999887777888
Q ss_pred hcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 385 SQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+.++|++|++.+|+.|++||+.++. .....++.+..+...+.+++..+|.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999875 334445555555667788999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeE
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i 522 (922)
+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999988999999999974
No 74
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=364.35 Aligned_cols=213 Identities=30% Similarity=0.442 Sum_probs=186.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC---HHHHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~---~~~lr 384 (922)
.|+++||+..||+ ++.+|+||||+|++||+|||+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999983 578999999999999999999999999999999999999999999999999998887 55678
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc-C-----------CCHHHH---HHHHHHHHHHHhHHHhhccchhhhcCCCCCCC
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR-D-----------ATLDQI---EEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~-~-----------~~~~~~---~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS 448 (922)
++||+++|++.|-+ .|+.+|+..|+ . .++++- .++++..++.+ ..-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-----------~A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-----------KAYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-----------HHHHHhccCC
Confidence 89999999999986 89999999885 2 233333 33444444333 2335667899
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEe
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~ 525 (922)
|||+||++|||||+++|+|+|-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|.++.+++ ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998874 58899999999999876 999999999999999
Q ss_pred cCHHHHhh
Q 002434 526 GTHDELLA 533 (922)
Q Consensus 526 G~~~eL~~ 533 (922)
|+.+|+-.
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
No 75
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.3e-44 Score=380.90 Aligned_cols=211 Identities=33% Similarity=0.504 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC-----CCCCcEEEECCEeCCCCC--HH
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY-----DPTLGEVLLDGENIKNLK--LE 381 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~-----~~~~G~I~i~g~~i~~~~--~~ 381 (922)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999953 46999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhhcceEEecCCCCccccHHHHHhcCcC---C-C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
.+|++++|++|++.+|+.|++||+.++.. . . ++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 67889999999999998999999987531 1 1 1233444444444332222110 5789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
|++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655899999999998765 999999999999999988763
No 76
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-44 Score=365.43 Aligned_cols=223 Identities=26% Similarity=0.429 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC-CHHHHhh
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-KLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~-~~~~lr~ 385 (922)
-++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999996431 01499999999999999999999999999999999999999999999999776554 3446788
Q ss_pred cceEEecCCCC-cc--ccHHHHHhcCc-----CCCHHHHHHHHHHHHHHH-hHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEPAL-LS--LSIRDNIAYGR-----DATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~~l-f~--~ti~eNi~~~~-----~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
.|-+|+|||.- +| -||++-|.=+- +-..+++.++++.+++.+ |..+. ..+|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-----------P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-----------PHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-----------chhcChhHHHHHH
Confidence 99999999972 33 67777665321 234456778888877643 33344 4579999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR--STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~--t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||||.-+|++||||||||+||...++.|.+.+.++++++ |.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998887644 99999999999988 99999999999999999999987
Q ss_pred c-CcHHHHH
Q 002434 534 T-GDLYAEL 541 (922)
Q Consensus 534 ~-~~~~~~l 541 (922)
. ...|.+.
T Consensus 232 ~~~h~ytr~ 240 (252)
T COG1124 232 HPSHPYTRE 240 (252)
T ss_pred CCccHHHHH
Confidence 6 3455543
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-44 Score=389.19 Aligned_cols=217 Identities=27% Similarity=0.451 Sum_probs=187.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEecCCC--CccccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+||+|+|. ++..|++|||.++. ..+.+ ++.++++..++.++ ......+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF-----------KEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999984 55789999999874 23332 34444554454433 3344568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999999988753 78999999999998889999999999999999999887653
No 78
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-44 Score=373.77 Aligned_cols=209 Identities=28% Similarity=0.499 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++|+|.+ . ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+...... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4899999999953 2 69999999999999999999999999999999999999999999999987766543 4689
Q ss_pred eEEecCC---CCccccHHHHHhcCcC-----------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 388 GLVTQEP---ALLSLSIRDNIAYGRD-----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 388 ~~v~Q~~---~lf~~ti~eNi~~~~~-----------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
|||||.. +-|+.||+|-+.+|+. .+.+++.++++.+++.++.. .++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999965 5689999999999851 13478899999998876643 2344 69999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
|+.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ |+|+++|||+++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999998864 8999999999998766 99999985 578899999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 79
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-44 Score=352.97 Aligned_cols=207 Identities=27% Similarity=0.437 Sum_probs=186.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr~ 385 (922)
|+|+||+++|++ +.++|+||||+|++||++.|+||||||||||+++|.+...|+.|+|.++|+|+..+..++ +|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 799999999985 367999999999999999999999999999999999999999999999999998887554 799
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+||+|+||..|.. -|+.||++|.- ... .+++.++++.++|.+....||. +|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999999875 89999999963 223 3566788889999988888885 699999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||++.+|++||-||||.+|||.+...|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998875 58899999999999977 678999999999875543
No 80
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=380.00 Aligned_cols=217 Identities=28% Similarity=0.427 Sum_probs=188.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC---CCCcEEEECCEeCCCCCHHHHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~---~~~G~I~i~g~~i~~~~~~~lr 384 (922)
.|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 378999999995 3469999999999999999999999999999999999985 6999999999999988888889
Q ss_pred hcceEEecCCCCccccHHHHHhcCcC---C------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 385 SQIGLVTQEPALLSLSIRDNIAYGRD---A------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~~ti~eNi~~~~~---~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+.|+|++|++.+|+.|++||+.++.. . .++++.++++..++.+++. +...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 99999999999999999999987631 1 1123444455555543332 234567789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998764 999999999999999999998754
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=396.91 Aligned_cols=213 Identities=24% Similarity=0.410 Sum_probs=185.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 35799999999999999999999999999999999999999999999999999887764 4789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|+ .|++|||.|+.. .+. +++.++++..++.++..+ ...+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999995 799999998742 232 334555555555554444 34589999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..+.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999988754 7899999999987754 9999999999999999999997653
No 82
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-43 Score=367.42 Aligned_cols=203 Identities=33% Similarity=0.524 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|+++|++++|+.. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999632 2479999999999999999999999999999999999999999999999999988888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
|+||+|+|.+|++|++||+.+....+.+++.++++ +......|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998765444444433332 345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCH
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~ 528 (922)
+|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999988778999999999999888999999999999998863
No 83
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-42 Score=378.33 Aligned_cols=240 Identities=24% Similarity=0.396 Sum_probs=205.4
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 282 YRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 282 ~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+.+.+++..+.+.. +..+.+.....|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|++
T Consensus 15 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 15 EGFGELLEKAKQEN--NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHHhcccccc--cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556665544322 222233445679999999952 36999999999999999999999999999999999999
Q ss_pred CCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhc
Q 002434 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441 (922)
Q Consensus 362 ~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg 441 (922)
+|++|+|.++| .|+|++|++.+|+.|++||+.++......++.++++.+++.+.+..+|.++++.++
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 99999999998 49999999999999999999987544455666777778888899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
+.+.+||||||||++||||++++|++|||||||++||+.++..+.+. ++.+.+++|+|++||+++.+..||+|++|++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999988875 45666689999999999999889999999999
Q ss_pred eEEEecCHHHHhhcCcHHHHH
Q 002434 521 RLFEMGTHDELLATGDLYAEL 541 (922)
Q Consensus 521 ~i~~~G~~~eL~~~~~~~~~l 541 (922)
++++.|+++++.+....|.+.
T Consensus 235 ~i~~~g~~~~~~~~~~~~~~~ 255 (282)
T cd03291 235 SSYFYGTFSELQSLRPDFSSK 255 (282)
T ss_pred EEEEECCHHHHHhcchHHHHH
Confidence 999999999988655445433
No 84
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-43 Score=392.15 Aligned_cols=219 Identities=31% Similarity=0.493 Sum_probs=184.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 384 (922)
|+++||+|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
++|+||+|++.+|. .|++||+.++. ..+.++..+. +.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR-----VTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 79999999863 2233222211 12223322 34444445567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|+++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999876 999999999999999999999765
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=383.96 Aligned_cols=211 Identities=30% Similarity=0.519 Sum_probs=183.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999962 34699999999999999999999999999999999999999999999999999888888888999
Q ss_pred eEEecCC--CCccccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEP--ALLSLSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~--~lf~~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+||+|+| .++..|++||+.++.. .+. +++.++++..++.++... ....||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 5788999999998641 222 234445555555443333 3357999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHH
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL 531 (922)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998874 4789999999999985 5999999999999999998654
No 86
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.3e-43 Score=375.48 Aligned_cols=220 Identities=30% Similarity=0.475 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i 387 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 47899999995 3469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC-CCHHHH-------HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD-ATLDQI-------EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~-------~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+|++|++.+|. .|++||+.++.. .....+ ........+++.++.+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 99999999987 599999988641 110000 0000111233444444 555566777789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998875 68899999999999866 99999999999999999998764
No 87
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=378.49 Aligned_cols=463 Identities=15% Similarity=0.122 Sum_probs=348.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhH------HHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD------IVSQVLSDVLLIQSALSEKV 109 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~------l~srl~~Di~~i~~~~~~~~ 109 (922)
|..++++...+...+.++-..+..+.-.-+-+.+.++.+...-.|+.. ..|. .=+|+..|+...-+......
T Consensus 92 f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~ 169 (604)
T COG4178 92 FAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDLS 169 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHHH
Confidence 334444445555667777777777777778888888888888555543 3332 23699999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 110 GNYIHNMATFFSGLAIAF---------------VNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAE 174 (922)
Q Consensus 110 ~~~i~~~~~~i~~li~~~---------------~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (922)
..++.++++++...+++. .+...+..++++.+++--++...+++.+.+.+.+.++..+.....+.
T Consensus 170 ~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv 249 (604)
T COG4178 170 FGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV 249 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 777777766655555443 22223333334444444445556666677777777777888888888
Q ss_pred HHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 002434 175 QAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTAL 254 (922)
Q Consensus 175 e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~ 254 (922)
..-++.+.|-.++.|+.+.++..+......+...+..........+......++.++-+..++-....|+++.|.++...
T Consensus 250 rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~ 329 (604)
T COG4178 250 RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAV 329 (604)
T ss_pred HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHH
Confidence 88899999999999999988877766665554444433333333333333333334444556666789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCCCCCCC---CCCcccEEEEeEEEEeCCCCCCC
Q 002434 255 FAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSS------STTNYDGNTL---PSVHGNIEFRNVYFSYLSRPEIP 325 (922)
Q Consensus 255 ~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~------~~~~~~~~~~---~~~~g~i~~~~v~f~y~~~~~~~ 325 (922)
.++......+..+...+..+..-++...|+.++...-+ +.....+... ...+..|+++|++..-|.. ..
T Consensus 330 ~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ 407 (604)
T COG4178 330 GAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QT 407 (604)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ce
Confidence 88888877888888999999999999999988863221 1111111000 0114679999999998743 47
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi 405 (922)
.|+++||++++||.+-|.||||||||||++.|+|++|--+|+|..-.. ..+-|+||.|++-.||+||-|
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHH
Confidence 899999999999999999999999999999999999999999876421 258899999999999999999
Q ss_pred hcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHH
Q 002434 406 AYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (922)
Q Consensus 406 ~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~ 482 (922)
+|.+ +++++++.+++.+|+|.++++++.+-. .=..-||+|||||||+||.++++|++++|||+|||||+++|
T Consensus 477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551 (604)
T ss_pred hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence 9987 389999999999999999999975432 23467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEe
Q 002434 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 483 ~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 552 ~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 552 DRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999889999999999998877777665554
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-43 Score=382.55 Aligned_cols=220 Identities=29% Similarity=0.482 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHHH
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~~ 382 (922)
|+++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 24699999999999999999999999999999999999999999999999998653 3457
Q ss_pred HhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHHH
Q 002434 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRia 456 (922)
+|++||||+|+| .+|+.|+.|||.++. ..+.++..+.+ .+.+..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999997 588889999999874 23443333221 2233333 6653 345678899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4799999999999875 599999999999999999999876
Q ss_pred cC
Q 002434 534 TG 535 (922)
Q Consensus 534 ~~ 535 (922)
..
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 53
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=394.18 Aligned_cols=211 Identities=25% Similarity=0.472 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 599999999995 35699999999999999999999999999999999999999999999999999887653 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|+ .|++|||.|+. ..+.+ ++.++++..++.++ .......||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999996 79999999874 22333 34445554444333 33445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 7899999999998754 999999999999999999999765
No 90
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=381.73 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC--HHHHh
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~--~~~lr 384 (922)
|+++||+|+|+... .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996321 146999999999999999999999999999999999999999999999999998754 45678
Q ss_pred hcceEEecCC--CCccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 385 SQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 ~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
++|+||+|+| .+|+.|++|||.++. ..+.++. .++++.+++. +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 578899999999864 2344433 2333333321 11345566789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 789999999999875 59999999999999999999986
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 91
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-43 Score=376.82 Aligned_cols=217 Identities=28% Similarity=0.424 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 599999999995 24699999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC----CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.|+||+|++.+|+.|++|||.++.. .+ ++++.++++.+++.+.+ ++.+ .....+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHHH
Confidence 567889999999999999999999998641 12 22334444444442222 2233 345678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999998765 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 754
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.4e-43 Score=370.24 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=180.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i 387 (922)
|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |+++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 57899999995 3469999999999999999999999999999999999999999999999999988776554 6779
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+|++|++.+|. .|++||+.++.. ....+..+. +.+.++.++ +++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999997 499999998642 111111111 112222221 2333445566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57899999999998765 99999999999999999888653
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.6e-43 Score=376.30 Aligned_cols=216 Identities=31% Similarity=0.492 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEeCCCC--CHH
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNL--KLE 381 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-----~G~I~i~g~~i~~~--~~~ 381 (922)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999953 46999999999999999999999999999999999999998 99999999998763 455
Q ss_pred HHhhcceEEecCCCCccccHHHHHhcCcC----CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
.+|++|+|++|++.+|+.|++||+.++.. .+.+ ++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 67889999999999999999999987531 1222 2333444444432221 3345567799999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998765 9999999999999999999986
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 53
No 94
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=377.37 Aligned_cols=217 Identities=29% Similarity=0.494 Sum_probs=185.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 380 (922)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 499999999995 2469999999999999999999999999999999999975 689999999999865 345
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CC-C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.|+|++|++.+|+.|++||+.++. .. . .+++.++++.+++.+++ .+.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 67788999999999999899999998753 11 1 22344444444443322 2344566789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998855 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 754
No 95
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-43 Score=377.45 Aligned_cols=219 Identities=31% Similarity=0.524 Sum_probs=187.6
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--C
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--L 378 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~ 378 (922)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999953 469999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhhcceEEecCCCCccccHHHHHhcCcC----CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
+...+|++|+|++|++.+|+.|++||+.++.. .+. +++.++++..++.+. +.....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHH
Confidence 55678899999999999999999999987631 222 234444444444222 234456677899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999998865 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98754
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.5e-43 Score=395.16 Aligned_cols=201 Identities=29% Similarity=0.437 Sum_probs=176.7
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH----hhcceEEecCCCCcc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS 398 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~v~Q~~~lf~ 398 (922)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+..++ |++|+||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4569999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred -ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEE
Q 002434 399 -LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470 (922)
Q Consensus 399 -~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliL 470 (922)
.||+|||.++.. .+. +++.++++.+++. ........+||||||||++|||||+++|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-----------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-----------EYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998642 222 3344444444443 344555668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchh-hccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 471 DEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 471 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||||+||+.++..+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999998774 379999999999986 45999999999999999999999875
No 97
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.4e-43 Score=393.69 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34689999999999999999999999999999999999999999999999999887764 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|+ .|++|||.|+. ..+.+ ++.++++.. |++........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l-----------~L~~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----------GLPGSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCCchhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 89999999874 22222 233333333 3444445566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++|+....
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988753 7899999999998755 9999999999999999999998753
No 98
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=372.45 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999888878888999
Q ss_pred eEEecCCCCccccHHHHHhcCcCC---CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 388 GLVTQEPALLSLSIRDNIAYGRDA---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
+|++|++.+|+.|++||+.++... ..+++.+.++..++. +........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN----------KEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999976421 122333333333321 1123456778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998874 37899999999999875 999999999999999999998764
No 99
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-43 Score=364.78 Aligned_cols=200 Identities=32% Similarity=0.468 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPE--IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999964211 3699999999999999999999999999999999999999999999999 6
Q ss_pred ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
|+|++|+|.+|+.|++||+.++...++++..++++.+++.+++..+|.|++|.+.+.+.+||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999976556667778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHH-cCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 467 ILLLDEVTGGLDFEAERAVQE-ALDLL-MLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~-~l~~~-~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 45655 34789999999999998899999999985
No 100
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-43 Score=374.96 Aligned_cols=220 Identities=30% Similarity=0.446 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC---HHHHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~---~~~lr~ 385 (922)
|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999953 256999999999999999999999999999999999999999999999999998776 456788
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcCCCH---HHHH---HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRDATL---DQIE---EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~---~~~~---~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
.++|++|++.+|. .|++||+.++..... ..+. .......+.+.+..+ |++........+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999999886 799999987531000 0000 000011112223332 444455667789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHh
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
||++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999998874 3789999999999987 59999999999999999998863
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=379.94 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=187.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999632 35699999999999999999999999999999999999999999999999999888887888899
Q ss_pred eEEecCC--CCccccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+|++|++ .+++.|++|||.++. ..+.+ ++.++++..++.+++. .....||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 456789999999863 12332 3444555555544443 33458999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCc
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~ 536 (922)
|||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999999999999999998764 789999999999998899999999999999999999876543
No 102
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=380.25 Aligned_cols=219 Identities=23% Similarity=0.438 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----CCHHH
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~----~~~~~ 382 (922)
|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHH
Q 002434 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRia 456 (922)
+|+.|+||+|+| .+|..|+.||+.|+. ..+.++..+.+ .+.++.+ |++ ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 889999999998 788899999999874 13333322211 1112221 222 2234566799999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998875 4889999999999885 5999999999999999999998754
No 103
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=380.54 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=182.6
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----CCHHH
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~----~~~~~ 382 (922)
|+++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996321 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
+|+.|+||+|+| .+|+.|++|||.++. ..+.++. .++++.+++.. ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 788999999998 688899999999874 2333333 23333333221 1234556789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 7899999999998854 99999999999999999999
Q ss_pred Hhhc
Q 002434 531 LLAT 534 (922)
Q Consensus 531 L~~~ 534 (922)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-42 Score=367.14 Aligned_cols=210 Identities=28% Similarity=0.438 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||++.|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999631 257999999999999999999999999999999999999999999999999987643 56788899
Q ss_pred EEecCCCCc-cccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALL-SLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
||+|++.+| ..|++||+.+.. ..+.+ ++.++++..++ +........+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGL-----------TDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhChhhhCCHHHHHHHHHHHH
Confidence 999999998 589999998753 12222 22333333332 222334456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999865 999999999999999998875
No 105
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=372.32 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999953 469999999999999999999999999999999999999999999999999876553 357899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC---C----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD---A----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
||+|+|.+|. .|++||+.++.. . +.++..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999985 799999998642 1 1111111 112222322 34444455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|+.+|++|||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999998755 999999999999999999998654
No 106
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.4e-43 Score=369.42 Aligned_cols=202 Identities=27% Similarity=0.462 Sum_probs=171.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr~ 385 (922)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999998776543 4678
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+++|++|++.+|. .|++||+.++. ... ++++.++++..++.++. .....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-----------HALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHH
Confidence 9999999999886 69999998752 111 23445555555544333 33345899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999875 999999999975
No 107
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-42 Score=372.15 Aligned_cols=220 Identities=26% Similarity=0.407 Sum_probs=180.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH---HHHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 385 (922)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999951 3569999999999999999999999999999999999999999999999999887654 34688
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcCCCH---HHHH---HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRDATL---DQIE---EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~---~~~~---~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+++||+|++.+|. .|++||+.++..... ..+. .......+.+.++.+ |++........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 9999999999886 799999987631100 0000 000011122233332 444455667789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
||++.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998874 37899999999999854 9999999999999999998863
No 108
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=370.89 Aligned_cols=218 Identities=31% Similarity=0.483 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 384 (922)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 12799999999999999999999999999999999999999999999999999877654 347
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+.|+|++|++.+|. .|++||+.++. ..+..+..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-----RVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999996 79999998753 122211111 122233333 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
++++|++|||||||++||+.++..+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998874 3 7899999999999865 99999999999999999988754
No 109
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-43 Score=367.28 Aligned_cols=202 Identities=33% Similarity=0.539 Sum_probs=171.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999953 479999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC---CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
||+|++.+|. .|++||+.++.. .+.+ ++.++++.. |++........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV-----------GLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 799999987631 1222 233333333 33334445557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|+++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998874 37899999999998765 9999999999998865
No 110
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=368.19 Aligned_cols=211 Identities=27% Similarity=0.476 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE---eCCCCCHHHHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE---NIKNLKLEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~---~i~~~~~~~lr 384 (922)
.|.++|+++.|+ ..++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |..+... -.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 478899999995 457899999999999999999999999999999999999999999999999 6666433 34
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcC-----CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRD-----AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~-----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
++||+|+|+..||. .||++||+||-. .+ +.++.+.++.++|...-+..| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 68999999999995 999999999952 22 334555566666655544444 5799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL 531 (922)
+||||||..+|++||||||++|||++.++.+..-|+++.. +.|+++|||+.+.+. .||||++|++|+|.+.|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999988887643 789999999998765 5999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 226 ~~~ 228 (345)
T COG1118 226 YDH 228 (345)
T ss_pred hcC
Confidence 765
No 111
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=377.58 Aligned_cols=218 Identities=27% Similarity=0.456 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743334699999999999999999999999999999999999999999999999999887777889999
Q ss_pred eEEecCCC--CccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+||+|+|. ++..|+.|||.++. ..+.+++ .++++.+++.++ .......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-----------KTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999984 66799999998763 2333333 334444444332 3334578999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCc
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~ 536 (922)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999988754 789999999999998899999999999999999999876543
No 112
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-42 Score=393.45 Aligned_cols=220 Identities=25% Similarity=0.427 Sum_probs=191.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 389999999995 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-ccccHHHHHhcCcC-C-------C---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 388 GLVTQEPAL-LSLSIRDNIAYGRD-A-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 388 ~~v~Q~~~l-f~~ti~eNi~~~~~-~-------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+||+|++.+ |+.|++||+.+++. + + .+++.++++..++.++. .....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 999999987 57999999998751 1 1 23455556655554433 234568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 57899999999999855 99999999999999999999886
Q ss_pred cCcHHHHHH
Q 002434 534 TGDLYAELL 542 (922)
Q Consensus 534 ~~~~~~~l~ 542 (922)
. ....+.+
T Consensus 229 ~-~~l~~~~ 236 (402)
T PRK09536 229 A-DTLRAAF 236 (402)
T ss_pred c-HHHHHHh
Confidence 4 3344444
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=377.38 Aligned_cols=215 Identities=27% Similarity=0.471 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC--CCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~ 385 (922)
-|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 356999999999999999999999999999999999999999999999999984 344567889
Q ss_pred cceEEecCC--CCccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
.|+|++|++ .+|+.|++||+.++. ..+.++ +.++++..++ .........+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhCCcccCCHHHHHHHH
Confidence 999999998 578899999998863 223332 3333333333 33345567899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999987 599999999999999999999876
Q ss_pred cC
Q 002434 534 TG 535 (922)
Q Consensus 534 ~~ 535 (922)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 43
No 114
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.1e-42 Score=390.89 Aligned_cols=212 Identities=23% Similarity=0.392 Sum_probs=183.7
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC--cEEEECCEeCCCCCHHHHh
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL--GEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~--G~I~i~g~~i~~~~~~~lr 384 (922)
+.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 5699999999995 3469999999999999999999999999999999999999999 999999999987665 35
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
+.|+||+|++.+|+ .|++|||.|+. ..+.+ ++.++++..++.++ ......+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHHHHHH
Confidence 68999999999996 69999999864 22332 34444444444433 34445689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|||||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988754 6899999999998755 9999999999999999999998
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
..
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 65
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.9e-42 Score=369.57 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 78999999995 346999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEecCCCCc-cccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALL-SLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.++ ..|++||+.++.. .+.++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 6899999987531 22222211 122334433 555666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 47899999999999888999999999999999999998765
No 116
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=375.43 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=186.6
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--C
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--L 378 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~ 378 (922)
.+.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 34699999999995 34699999999999999999999999999999999999975 89999999999865 3
Q ss_pred CHHHHhhcceEEecCCCCccccHHHHHhcCcC---C--CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH
Q 002434 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A--TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG 449 (922)
+...+|+.|+||+|++.+|+.|++||+.++.. . +. +++.++++..++.+++ .........+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 45678889999999999998899999987531 1 11 2234444444443322 2234566789999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778899999999999865 999999999999999999
Q ss_pred HHHhhc
Q 002434 529 DELLAT 534 (922)
Q Consensus 529 ~eL~~~ 534 (922)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998753
No 117
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=388.94 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=182.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 388999999995 3469999999999999999999999999999999999999999999999999987654 35689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC-------CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD-------ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~-------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+||+|++.+|+ .|++|||.|+.. .+.+ ++.++++..++.+ .......+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHH
Confidence 99999999996 799999998742 1222 3334444444433 23345568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988754 7899999999998765 9999999999999999999998
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
.+
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 65
No 118
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-42 Score=371.51 Aligned_cols=217 Identities=29% Similarity=0.507 Sum_probs=183.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999631 46999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccchh--hhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYET--QVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t--~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
|++|++.+|. .|++||+.++.. .+.++.. ..+.+.++.+ |+.. .......+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 799999987531 1211111 1122333332 3332 345667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 7899999999997755 999999999999999999988653
No 119
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2e-42 Score=390.26 Aligned_cols=212 Identities=27% Similarity=0.464 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877664 4689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|+ .||+|||.|+.. .+. +++.++++..++.++.... ..+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-----------PHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 699999998742 232 2345555555555554444 3579999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 789999999999865 49999999999999999999998753
No 120
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.8e-42 Score=368.72 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i 387 (922)
|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 57899999995 3469999999999999999999999999999999999999999999999999988776553 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALLSL-SIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf~~-ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+|++|++.+|+. |++||+.++. ....++..+ .+++.+..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 9999998753 122222111 223344443 55656667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999987655 99999999999999999998764
No 121
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-42 Score=378.87 Aligned_cols=215 Identities=22% Similarity=0.416 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC---------
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--------- 377 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~--------- 377 (922)
|+++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996421 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhh
Q 002434 378 ---------------LKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLE 433 (922)
Q Consensus 378 ---------------~~~~~lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~ 433 (922)
.+...+|+.||||+|+| .+|..|++|||.|+. ..+.++. .++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~---------- 152 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV---------- 152 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc----------
Confidence 13456788999999986 678899999999874 2344333 3333333
Q ss_pred ccch-hhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchh-hc
Q 002434 434 KGYE-TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RN 510 (922)
Q Consensus 434 ~g~~-t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~-~~ 510 (922)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 153 -gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 153 -GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 332 23456677899999999999999999999999999999999999999999998874 489999999999976 45
Q ss_pred cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 511 ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 511 ~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||||++|++|+|++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
No 122
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=371.52 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCCCHHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~~~~~ 382 (922)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999953 4699999999999999999999999999999999999984 6999999999998888888
Q ss_pred HhhcceEEecCCCCc-cccHHHHHhcCcC-----CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 383 LRSQIGLVTQEPALL-SLSIRDNIAYGRD-----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~-----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
+|+.|+|++|++.+| ..|++||+.++.. ... +++.++++..++.+.+ +........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 899999999999866 5899999987531 111 2334444444443222 1223455678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 754
No 123
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.5e-42 Score=383.32 Aligned_cols=216 Identities=26% Similarity=0.428 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 599999999995 357999999999999999999999999999999999999999999999999997755 4578899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|||||++.+|. .|++||+.+.. ..+..+..+.++ .+.+. ..+++..++.+ .+||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~l~~-~~l~~~~~~~~----~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVP--PLLEF-AKLENKADAKV----GELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchHhcCch----hhCCHHHHHHHHHHHHHhC
Confidence 99999999985 79999998632 223333222111 11111 12333445544 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999875 47899999999999876 999999999999999999998654
No 124
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=371.33 Aligned_cols=217 Identities=29% Similarity=0.421 Sum_probs=183.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCC--CCCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK--NLKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~--~~~~ 380 (922)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999953 4699999999999999999999999999999999999987 4999999999987 4556
Q ss_pred HHHhhcceEEecCCCCcc-ccHHHHHhcCc---C--CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D--ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~--~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
..+|++++|++|++.+|. .|++||+.++. . ...+ ++.++++..++..++ .........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHH
Confidence 678889999999999997 59999998753 1 1222 233334433332222 22345567899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999998765 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
No 125
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=372.43 Aligned_cols=217 Identities=27% Similarity=0.417 Sum_probs=184.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~--~---~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 489999999995 3469999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC----CCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.|+|++|++.+|+.|++||+.++.. .++++ +.++++..++.+++ .+.......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 677889999999999999999999987631 12222 22333333332222 2334567789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998865 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 654
No 126
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-42 Score=367.81 Aligned_cols=213 Identities=25% Similarity=0.416 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---H
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l 383 (922)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996422 147999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-hcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 384 R-SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 384 r-~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
| +.|+|++|++.+|+ .|++||+.++. ..+.++..+. +.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-----ALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999999986 59999998742 2222221111 11222222 444445566778999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEecC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~ 527 (922)
||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4789999999999999999999999999998775
No 127
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.9e-42 Score=362.73 Aligned_cols=206 Identities=27% Similarity=0.450 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCC-CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
|+++||+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999964211 269999999999999999999999999999999999999999999999999875 446678899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+|++|++.+|. .|++||+.+.. ..+.+ ++.++++.. |++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL-----------GMEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHHhhhhhhcCHHHHHHHHHHH
Confidence 99999999997 59999998643 12222 223333333 4444455667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 47899999999998765 9999999999998765
No 128
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=377.52 Aligned_cols=211 Identities=28% Similarity=0.442 Sum_probs=178.3
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH----hh
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RS 385 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l----r~ 385 (922)
.++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777774 3568999999999999999999999999999999999999999999999999988765543 46
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+++|++|++.+|. .|++||+.++. ..+. +++.++++..++.+++ .....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHH
Confidence 7999999999985 79999998753 1222 2344444444444333 33445799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37899999999998755 999999999999999999998754
No 129
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-42 Score=362.40 Aligned_cols=198 Identities=29% Similarity=0.479 Sum_probs=170.2
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++|++++|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999953 1579999999999999999999999999999999999999999999999998854 456778999
Q ss_pred EecCC--CCccccHHHHHhcCc-C--CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 390 VTQEP--ALLSLSIRDNIAYGR-D--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 390 v~Q~~--~lf~~ti~eNi~~~~-~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
++|++ .+|+.|++||+.++. . ...+++.++++..++.++... ....||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999999864 1 123456666666665544333 3357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
|++|||||||++||+.+++.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 457899999999999875 9999999999985
No 130
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=370.22 Aligned_cols=218 Identities=29% Similarity=0.479 Sum_probs=184.4
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--CC
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LK 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~~ 379 (922)
+.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45899999999953 4699999999999999999999999999999999999863 69999999999874 35
Q ss_pred HHHHhhcceEEecCCCCccccHHHHHhcCcC---C-C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
...+|+.++||+|++.+|+.|++||+.++.. . + ++++.++++.+++.+. +.........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-------VKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hHHHHhcCCCCCCHHH
Confidence 5677889999999999999999999998631 1 1 1223333444433222 2233456678999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778899999999998765 99999999999999999999
Q ss_pred Hhhc
Q 002434 531 LLAT 534 (922)
Q Consensus 531 L~~~ 534 (922)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8643
No 131
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=373.54 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=184.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|++ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4899999999963 245799999999999999999999999999999999999999999999999999887777889999
Q ss_pred eEEecCCC--CccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+|++|++. ++..|++|||.++. ..+.++. .++++..+ ++........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG-----------MEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHhhCCcccCCHHHHHHHHHH
Confidence 99999983 55689999999863 1233332 23333333 33344555679999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999998888999999999999999999988654
No 132
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=390.37 Aligned_cols=211 Identities=26% Similarity=0.433 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999876653 4679
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|+ .|++|||.++. ..+.+ ++.++++..++. ........+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-----------~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-----------HLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 69999999864 22222 334444444433 3334445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||+++|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988743 7899999999998765 999999999999999999998764
No 133
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.6e-42 Score=361.44 Aligned_cols=202 Identities=26% Similarity=0.407 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 57899999995 34799999999999999999999999999999999999999999999999988754 55678899
Q ss_pred EEecCCCCc-cccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
||+|++.+| +.|++||+.++. ..+++++.++++..++.+... .....||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 489999998753 234556666666666654433 33467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 47899999999998865 9999999999999865
No 134
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.5e-42 Score=365.81 Aligned_cols=207 Identities=30% Similarity=0.448 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH----H
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW----L 383 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~----l 383 (922)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996311 147999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+++++|++|++.+|. .|++||+.++.. ....+.. ..+.+.+..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 578999999999997 499999998642 1211111 1122233333 4444455666789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeE
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i 522 (922)
|++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7899999999998888999999999974
No 135
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=374.36 Aligned_cols=214 Identities=30% Similarity=0.520 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999953 246999999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEecCCC--CccccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 389 LVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 389 ~v~Q~~~--lf~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
||+|++. +|+.|++||+.++. ..+.+ ++.++++..++.++ .......||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL-----------RDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHHHHHHH
Confidence 9999984 77899999998754 23333 23444444444333 33445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 99999999999999999999999999999988753 789999999999985 59999999999999999999987643
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-42 Score=374.35 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC-HHHHhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~-~~~lr~~i 387 (922)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999952 346999999999999999999999999999999999999999999999999998765 35678899
Q ss_pred eEEecCCC--CccccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPA--LLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~--lf~~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+||+|+|. +++.|++|||.++.. .+.++..+.+ .+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV-----DRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 567899999998641 2333222211 1122222 3444455566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998875 48899999999999988999999999999999999987653
No 137
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=372.53 Aligned_cols=219 Identities=26% Similarity=0.409 Sum_probs=187.1
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--C
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--L 378 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~ 378 (922)
...|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 34699999999995 3579999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhcceEEecCCCCccccHHHHHhcCc---CC-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
+...+|+.|+||+|++.+|..|++|||.++. .. ++ +++.++++..++.+++ ++..+....+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 4566788999999999999999999998853 11 22 2233444444443322 34456778899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||||++||||++++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999998755 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98754
No 138
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-42 Score=362.70 Aligned_cols=202 Identities=24% Similarity=0.403 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++|+|++ .++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999953 46999999999999 99999999999999999999999999999999999988766 67788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.+.. ..+. +++.++++..++.++ ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHHHHHHH
Confidence 9999999987 59999998742 1222 233444444444322 223446799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999865 9999999999999865
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-42 Score=365.60 Aligned_cols=217 Identities=24% Similarity=0.346 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 386 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 389999999995 347999999999999999999999999999999999999999999999999998887654 6778
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
++|++|++.+|+ .|++||+.++.. .+.++..+.+ .+.+..++.. +.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRL-HERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHH-HHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999997 699999998642 2222222221 1222222211 1223345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998875 4899999999998765 499999999999999999999864
No 140
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=364.29 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=176.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 57899999995 34699999999999999999999999999999999999999999999999988753 356778899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+++ .|++||+.++. ..+. +++.++++..++.+. ......+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999886 69999998752 1222 234444444444332 223345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999998764
No 141
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.5e-42 Score=366.11 Aligned_cols=210 Identities=30% Similarity=0.466 Sum_probs=179.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 387 (922)
|+++||++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 57899999995 247999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc-CC--CHHH-HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR-DA--TLDQ-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~-~~--~~~~-~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+|++|++.+|+ .|++||+.++. .. ..++ ..++++.. ++++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999997 59999998764 21 1111 11222211 22334455667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
++|++|||||||++||+.++..+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988754 7899999999999886 999999999999999999987
No 142
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=374.78 Aligned_cols=217 Identities=29% Similarity=0.430 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCC---CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC-HHHH
Q 002434 308 NIEFRNVYFSYLSRP---EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWL 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~---~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~-~~~l 383 (922)
-|+++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999996421 246999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hhcceEEecCCC--CccccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 384 RSQIGLVTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 384 r~~i~~v~Q~~~--lf~~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
|++++||+|+|. +|..|+.||+.++. ..+. +++.++++.+++.++. .....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-----------RHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHH
Confidence 889999999984 67779999999864 1232 2344444444544433 33446899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHh
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
++||||++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999987
Q ss_pred hcC
Q 002434 533 ATG 535 (922)
Q Consensus 533 ~~~ 535 (922)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
No 143
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-42 Score=371.93 Aligned_cols=218 Identities=26% Similarity=0.452 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CC
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~ 379 (922)
..|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3599999999995 3469999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhcceEEecCCCCccccHHHHHhcCcC---CC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
...+|+.|+||+|++.+|..|++||+.++.. .. ++++.++++.+++.. +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 6778889999999999998899999998642 11 223334444443322 2334455667899999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeC-----------Ce
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE-----------GR 521 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~-----------G~ 521 (922)
|++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778899999999998865 999999996 67
Q ss_pred EEEecCHHHHhhc
Q 002434 522 LFEMGTHDELLAT 534 (922)
Q Consensus 522 i~~~G~~~eL~~~ 534 (922)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998754
No 144
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=370.27 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CC---CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DP---TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~---~~G~I~i~g~~i~~~--~~ 380 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 389999999995 346999999999999999999999999999999999995 46 499999999998643 34
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CC-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.++||+|++.+|+.|++||+.++. .. .. +++.++++.+++.+. ..+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------VKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-------HHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753 11 11 222333333333222 22345667789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998755 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 754
No 145
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=370.40 Aligned_cols=217 Identities=29% Similarity=0.468 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC---CCC--CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF---YDP--TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~---~~~--~~G~I~i~g~~i~~~--~~ 380 (922)
.|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 489999999995 34699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.|+|++|++.+|+.|++||+.++.. . .. +++.++++.+++.+++ ++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 567889999999999998999999987531 1 11 2233334433332222 2345667789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998855 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 754
No 146
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=368.56 Aligned_cols=217 Identities=29% Similarity=0.498 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-----~G~I~i~g~~i~~--~~~ 380 (922)
.|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 489999999995 346999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---CC-HHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-LDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~-~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.++||+|++.+|+.|++||+.++.. .. .++ +.++++..++.+. +.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHH
Confidence 677889999999999999999999998631 11 122 2223333333222 23445677889999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999999876 899999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
No 147
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-42 Score=373.53 Aligned_cols=212 Identities=27% Similarity=0.425 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 489999999995 24699999999999999999999999999999999999999999999999999888888888999
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC-C----------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD-A----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~-~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+|++|++.++. .|+.||+.++.. . .++++.++++.+++.++ ......+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-----------AHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCCHHHHHHH
Confidence 99999987765 699999997531 0 12234444444444332 3334457999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998874 37899999999999865 9999999999999999999876
Q ss_pred h
Q 002434 533 A 533 (922)
Q Consensus 533 ~ 533 (922)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 148
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=370.16 Aligned_cols=217 Identities=30% Similarity=0.473 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 380 (922)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 3899999999953 479999999999999999999999999999999999997 479999999999864 344
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---CC-H----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-L----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~-~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.++|++|++.+|+.|++||+.++.. .. . +++.++++..+++.. ..........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHH
Confidence 567889999999999999999999987531 11 1 223333333333211 11223456789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998765 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 654
No 149
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.5e-42 Score=361.61 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=187.8
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH----HHHhh
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRS 385 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~----~~lr~ 385 (922)
.+.|++|+|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57899999974 3579999999999999999999999999999999999999999999999998876542 34567
Q ss_pred cceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
.++|++|++.+|+.|++||+.++...++++..++++..++.+.+..+|.|++|.++....+||||||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999987655566677888888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 466 SILLLDEVTGGLDFEAERAVQE--ALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.++.||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999998887 555543 3789999999999998899999999884
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-42 Score=373.93 Aligned_cols=215 Identities=25% Similarity=0.431 Sum_probs=186.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC---cEEEECCEeCCCCCHHHHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~---G~I~i~g~~i~~~~~~~lr 384 (922)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 3469999999999999999999999999999999999999998 8999999999887777888
Q ss_pred hcceEEecCCC--CccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 385 SQIGLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 ~~i~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
++|+||+|++. +++.|++|||.++. ..+.++ +.++++.+++.+ .......+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHHHHH
Confidence 89999999984 56799999999863 233333 344444444443 33444578999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999998899999999999999999998865
Q ss_pred c
Q 002434 534 T 534 (922)
Q Consensus 534 ~ 534 (922)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 151
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=371.02 Aligned_cols=217 Identities=28% Similarity=0.457 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 380 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999995 34699999999999999999999999999999999999985 799999999998653 24
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
..+|+.++|++|++.+|+.|++||+.++. ..+.++ +.++++.+++.++ ...........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-------TSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCChhhCCHHHHH
Confidence 45778899999999999999999998753 122222 3333443333211 123345566789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999998865 9999999999999999999986
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 54
No 152
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-42 Score=366.62 Aligned_cols=215 Identities=25% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 387 (922)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 88999999995 347999999999999999999999999999999999999999999999999998877644 57789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC----CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+|++|++.+|. .|++||+.++.. .+.++. ...+.+.++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 699999987531 122211 12233444444 5555666777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
++|++|||||||++||+.++..+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998765 48899999999987755 99999999999999999998865
No 153
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-41 Score=364.61 Aligned_cols=216 Identities=25% Similarity=0.467 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC--CHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~ 386 (922)
|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 78999999995 34699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
++|++|++.+|. .|++||+.++. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 79999998753 122222211 112333333 555555666789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47999999999999865 999999999999999999988654
No 154
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.3e-42 Score=381.38 Aligned_cols=226 Identities=25% Similarity=0.401 Sum_probs=186.3
Q ss_pred cEEEEeEEEEeCCCC----------CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC
Q 002434 308 NIEFRNVYFSYLSRP----------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~ 377 (922)
-|+++|++++|+.+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhhcceEEecCC--CCcc-ccHHHHHhcCc-----CCCHHHHHHHHHHHHHHHhHHHhhccc-hhhhcCCCC
Q 002434 378 LKLEW---LRSQIGLVTQEP--ALLS-LSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGY-ETQVGRAGL 445 (922)
Q Consensus 378 ~~~~~---lr~~i~~v~Q~~--~lf~-~ti~eNi~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~g~-~t~vge~G~ 445 (922)
++..+ +|++|+||+|+| .+++ .||.|||.++. ..+.++..+.++ +.++.+ |+ +........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHc--CCChHHhcCCcc
Confidence 87544 577899999998 4774 89999997532 234443332221 112211 22 123355667
Q ss_pred CCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988753 7899999999999976 999999999999
Q ss_pred EEecCHHHHhhcC-cHHHH
Q 002434 523 FEMGTHDELLATG-DLYAE 540 (922)
Q Consensus 523 ~~~G~~~eL~~~~-~~~~~ 540 (922)
++.|+.+++.++. ..|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998653 34544
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-42 Score=370.80 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999995 347999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCccc-cHHHHHhcCcC-C-------C---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 389 LVTQEPALLSL-SIRDNIAYGRD-A-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 389 ~v~Q~~~lf~~-ti~eNi~~~~~-~-------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
|++|++.++.+ |+.||+.++.. . . ++++.++++..++ +.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRI-----------NHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCC-----------HHHHcCCcccCCHHHHHHHH
Confidence 99999998864 99999998631 1 1 1223333333333 33344556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
||||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998875 47899999999998865 99999999999999999999865
No 156
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=372.65 Aligned_cols=219 Identities=29% Similarity=0.481 Sum_probs=186.6
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--C
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--L 378 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~ 378 (922)
.+.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 34699999999995 24699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhhcceEEecCCCCccccHHHHHhcCcC---C-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
+...+|+.++|++|++.+|+.|++||+.++.. . .. +++.++++..++.+.+ .+..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHH
Confidence 45677889999999999998999999987531 1 11 2234444444433222 23456778899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778899999999998765 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.3e-42 Score=371.29 Aligned_cols=223 Identities=25% Similarity=0.428 Sum_probs=183.4
Q ss_pred EEEEeEEEEeCCC------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH
Q 002434 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~ 382 (922)
|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhhcceEEecCCC--Cc-cccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHH
Q 002434 383 ---LRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQ 451 (922)
Q Consensus 383 ---lr~~i~~v~Q~~~--lf-~~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGq 451 (922)
+|+.|+||+|++. ++ ..|++|||.++. ....++.. ..+.+.++.+ |++ ........+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 6778999999983 44 479999997542 11211111 1122233332 443 23456678999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||++||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 7899999999999875 999999999999999999
Q ss_pred HHHhhcCcHH
Q 002434 529 DELLATGDLY 538 (922)
Q Consensus 529 ~eL~~~~~~~ 538 (922)
+++......|
T Consensus 236 ~~~~~~~~~~ 245 (265)
T TIGR02769 236 AQLLSFKHPA 245 (265)
T ss_pred HHHcCCCCHH
Confidence 9998744433
No 158
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-41 Score=365.41 Aligned_cols=220 Identities=23% Similarity=0.388 Sum_probs=184.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i 387 (922)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999953 469999999999999999999999999999999999999999999999999988776543 4579
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcCCCHH---H---HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRDATLD---Q---IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~---~---~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+|++|++.+|+ .|++||+.++...... . .........+.+.+..+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999997 4999999885321000 0 00000111223334433 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999875 99999999999999999998864
No 159
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=371.48 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 489999999995 3569999999999999999999999999999999999865 789999999999865 344
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..++++++|++|++.+|+.|++||+.++.. . .. +.+.++++..++... ..........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHH
Confidence 567889999999999999999999987531 1 11 122333333333211 12334566789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998765 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 754
No 160
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.4e-41 Score=366.60 Aligned_cols=216 Identities=27% Similarity=0.472 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC---------
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------- 379 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~--------- 379 (922)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999953 47999999999999999999999999999999999999999999999999987553
Q ss_pred ----HHHHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 380 ----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 380 ----~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
...+|+.++|++|++.+|. .|+.||+.++. ....++..+ .+.+.++.+ |++.........||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2467889999999999885 89999998752 122222211 122333333 4445556667889999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~ 527 (922)
||||++||||++++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 499999999999999999
Q ss_pred HHHHhhc
Q 002434 528 HDELLAT 534 (922)
Q Consensus 528 ~~eL~~~ 534 (922)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9998754
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.4e-42 Score=350.22 Aligned_cols=178 Identities=32% Similarity=0.532 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+.+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999642 24699999999999999999999999999999999999999999999999988766 567788999
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
|++|++.+|+.|++||+ ..+||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEec
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G 526 (922)
||||||++||+.++..+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999887789999999999999889999999999998765
No 162
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=371.81 Aligned_cols=219 Identities=26% Similarity=0.466 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHHH
Q 002434 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~~ 382 (922)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHH
Q 002434 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 383 lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRia 456 (922)
+|+.|+|++|++ .+|+.|++|||.++. ..+.++..+.+ .+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 578899999998753 23333332221 1222222 343 2345567789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 47899999999998865 999999999999999999998653
No 163
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-42 Score=363.35 Aligned_cols=205 Identities=30% Similarity=0.437 Sum_probs=172.1
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996311 1479999999999999999999999999999999999999999999999998863 35789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|. .|++||+.++.. .+. +++.++++..++ +........+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL-----------SGFENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCCcccCCHHHHHHHHHHH
Confidence 99999999987 799999987531 221 223333333333 33344455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe--CCeEEEecCHH
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD--EGRLFEMGTHD 529 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~--~G~i~~~G~~~ 529 (922)
|++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|+++++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998873 37899999999998755 99999999 79999988753
No 164
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.9e-42 Score=361.60 Aligned_cols=208 Identities=28% Similarity=0.488 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 384 (922)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998877544 33
Q ss_pred -hcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 385 -SQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 385 -~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+.|+||+|++.+|+ .|++||+.++. ..+..+..+. +.+.+..+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999985 79999998742 2222211111 11233332 4444455566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEE
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLF 523 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~ 523 (922)
|++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 378999999999999889999999999986
No 165
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=371.76 Aligned_cols=220 Identities=25% Similarity=0.455 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHH
Q 002434 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~ 381 (922)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhcceEEecCC--CCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHH
Q 002434 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 382 ~lr~~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRi 455 (922)
..++.|+|++|+| .+|+.|++|||.++. ..+.++..+. +.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778999999998 577899999998753 2333332211 12223332 443 234556789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+||||++.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 47899999999998865 99999999999999999999865
Q ss_pred c
Q 002434 534 T 534 (922)
Q Consensus 534 ~ 534 (922)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 166
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.3e-42 Score=361.12 Aligned_cols=202 Identities=27% Similarity=0.488 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998766543 46899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.++. ....++ +.++++.. |++........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL-----------QIEHLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHHHHhCChhhCCHHHHHHHHHHHH
Confidence 9999999985 79999998753 122222 22233333 33344455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37899999999998876 9999999999999876
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-42 Score=371.19 Aligned_cols=215 Identities=31% Similarity=0.455 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEecCCC--CccccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 388 ~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+|++|+|. ++..|+++|+.++. ....+ ++.++++..++. ........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-----------ERADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCCcccCCHHHHHHHHHH
Confidence 99999985 44578999998863 12222 223333333332 223345678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999998764
No 168
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=374.36 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=182.2
Q ss_pred cccEEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----C-
Q 002434 306 HGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----L- 378 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~----~- 378 (922)
.+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999996431 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhhcceEEecCC--CCccccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccc-hhhhcCCCCCCCHHHH
Q 002434 379 KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGY-ETQVGRAGLALTEEQK 452 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~--~lf~~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~-~t~vge~G~~LSGGqk 452 (922)
+...+|+.|+||+|++ .+|..|++|||.++.. ...++..+.+ .+.++.+ |+ +........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3566788999999998 4678899999998641 2333222211 1112211 22 1234556789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998875 37899999999998755 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
No 169
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=368.83 Aligned_cols=217 Identities=26% Similarity=0.436 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 489999999995 2469999999999999999999999999999999999986 479999999999853 455
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---CC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
..+|++|+||+|++.+|+.|++||+.++.. .. ++++.++++.+++.+++. ......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 677889999999999998899999998642 11 223344455555544332 23456778999999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEe---------CCeEEE
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD---------EGRLFE 524 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~---------~G~i~~ 524 (922)
++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecCHHHHhhc
Q 002434 525 MGTHDELLAT 534 (922)
Q Consensus 525 ~G~~~eL~~~ 534 (922)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999754
No 170
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.7e-42 Score=368.11 Aligned_cols=216 Identities=27% Similarity=0.451 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC--------H
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------L 380 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~--------~ 380 (922)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999953 46999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
..+|+.++||+|++.+|+ .|++||+.++. ....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 457889999999999886 79999998742 1222222111 12233332 444445567789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+||||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 47899999999999865 99999999999999999999865
Q ss_pred c
Q 002434 534 T 534 (922)
Q Consensus 534 ~ 534 (922)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
No 171
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=385.20 Aligned_cols=213 Identities=25% Similarity=0.434 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
..|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 3599999999995 3469999999999999999999999999999999999999999999999999987764 4678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
||||+|++.+|+ .|++|||.|+. ..+.. ++.++++..++.+ .......+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999996 69999999874 22333 2333444444433 33344568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|||+++|++||||||||+||+.++..+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++|+..+.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 3789999999999865 49999999999999999999998753
No 172
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.2e-42 Score=362.28 Aligned_cols=211 Identities=28% Similarity=0.460 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH---HHHh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr 384 (922)
|+++||+++|+++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 1269999999999999999999999999999999999999999999999999988764 5678
Q ss_pred hcceEEecCCC--Cc-cccHHHHHhcCc---CC-CHHH-HHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHH
Q 002434 385 SQIGLVTQEPA--LL-SLSIRDNIAYGR---DA-TLDQ-IEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 ~~i~~v~Q~~~--lf-~~ti~eNi~~~~---~~-~~~~-~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRi 455 (922)
++++|++|++. ++ ..|++||+.++. .. ..++ ..+++ .+.+..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 489999998642 11 1111 11111 1233332 342 345667789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEec
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G 526 (922)
+||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988754 789999999999987 59999999999998765
No 173
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.1e-42 Score=362.49 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 489999999995 34699999999999999999999999999999999999999999999999999888888888999
Q ss_pred eEEecCCCCccccHHHHHhcCcC---C--CHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 388 GLVTQEPALLSLSIRDNIAYGRD---A--TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi~~~~~---~--~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+|++|++.+|+.|++||+.++.. . .++++. +.++.+ |+. +.......+||||||||++||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999987421 1 111222 233333 342 445677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEe-CCeEEEecCHH
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMD-EGRLFEMGTHD 529 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~-~G~i~~~G~~~ 529 (922)
+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998874 3789999999999998899999994 77788889885
No 174
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.3e-41 Score=370.14 Aligned_cols=213 Identities=23% Similarity=0.377 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 384 (922)
-|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999995 35699999999999999999999999999999999999999999999999998876543 357
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc----CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
++++|++|++.+|+ .|++||+.++. ..+.+ ++.++++.. |++........+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV-----------GLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 78999999999997 59999998742 12222 122222222 333333445578999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7899999999998866 9999999999999999999987
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
+.
T Consensus 233 ~~ 234 (269)
T PRK11831 233 AN 234 (269)
T ss_pred cC
Confidence 64
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=366.50 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=184.3
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEeCCCC--C
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKNL--K 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~--~---~~G~I~i~g~~i~~~--~ 379 (922)
+.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 5699999999995 3469999999999999999999999999999999999986 4 689999999998653 4
Q ss_pred HHHHhhcceEEecCCCCcc-ccHHHHHhcCc---C-CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
...+|+.|+|++|++.+|. .|++||+.++. . .+. +++.++++..++..++. ........+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4567889999999999997 79999998752 1 122 22334444444433222 2334567899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999855 9999999999999999999
Q ss_pred HHhhc
Q 002434 530 ELLAT 534 (922)
Q Consensus 530 eL~~~ 534 (922)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-42 Score=369.26 Aligned_cols=216 Identities=25% Similarity=0.439 Sum_probs=182.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCCCC--HH
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLK--LE 381 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~~~--~~ 381 (922)
-+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 47899999995 3479999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhhcceEEecCCCCccccHHHHHhcCc---CC--CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR---DA--TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.+|+.++||+|++.+|+.|++||+.++. .. .. +++.++++..++.++ +.+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 5788999999999999999999998752 11 11 223333444333222 12345566789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 654
No 177
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.6e-41 Score=374.84 Aligned_cols=215 Identities=19% Similarity=0.342 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999995 3569999999999999999999999999999999999999999999999999876 3457788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|+||++.+|. .|++||+.+.. ..+.++..+. +++.+..+ |++........+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 59999998643 1222222211 12223332 455555666788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998876 999999999999999999998653
No 178
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=365.80 Aligned_cols=216 Identities=27% Similarity=0.457 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCC-CCCHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK-NLKLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~-~~~~~ 381 (922)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999995 35699999999999999999999999999999999999986 5999999999985 45566
Q ss_pred HHhhcceEEecCCCCccccHHHHHhcCcC---CC-HH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-LD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~-~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
.+|+.++|++|++.+|..|++||+.++.. .. ++ ++.++++..++.+. +.+.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-------VKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-------hhHHhhcCcccCCHHHHH
Confidence 78889999999999999999999987631 11 11 22333333333322 223455667899999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 9999999999999999998875
Q ss_pred h
Q 002434 533 A 533 (922)
Q Consensus 533 ~ 533 (922)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
No 179
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=368.64 Aligned_cols=217 Identities=26% Similarity=0.405 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 499999999995 3469999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CCCHH-H----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLD-Q----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~~~-~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..++++++|++|++.+|..|++||+.++. ..+++ . +.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 67788999999999999899999998753 12221 1 12222222111 2333455677889999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 754
No 180
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=366.69 Aligned_cols=217 Identities=28% Similarity=0.462 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 380 (922)
-|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999995 34699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C-CHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
...|+.|+|++|++.+|+.|++||+.++.. . ... ++.++++..++. +++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALW-------DEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCc-------hhhHHHhhcChhhCCHHHH
Confidence 667889999999999999999999998642 1 111 223333333332 2333456777889999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 654
No 181
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=366.60 Aligned_cols=217 Identities=28% Similarity=0.468 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 380 (922)
-|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 389999999995 34799999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC----CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+++.++|++|++.+|..|++||+.++.. ..+ +++.++++..++.+.+ ++.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 467889999999999999999999987531 112 2233344444443222 2335667789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999997654 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 754
No 182
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.3e-42 Score=360.10 Aligned_cols=200 Identities=28% Similarity=0.444 Sum_probs=170.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr~ 385 (922)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 35799999999999999999999999999999999999999999999999999877643 4678
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
.++|++|++.+|. .|++||+.++. ... ++++.++++..++.+++. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 8999999999986 79999998752 112 233444555544443332 2335799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
|||++++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998874 48999999999999876 99999999985
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=385.71 Aligned_cols=199 Identities=29% Similarity=0.458 Sum_probs=172.1
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH----hhcceEEecCCCCcc-c
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-L 399 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~v~Q~~~lf~-~ 399 (922)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++|+||+|++.+|+ .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 458999999999996 7
Q ss_pred cHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeC
Q 002434 400 SIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472 (922)
Q Consensus 400 ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDE 472 (922)
|++|||.++. ..+. +++.++++..++.++. .....+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999863 1222 2344445555444333 33446899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 473 VTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 473 pts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||++||+.++..+++.|+++. .++|+|++||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998874 47899999999998755 999999999999999999999765
No 184
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2e-41 Score=374.65 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++|
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 489999999995 34699999999999999999999999999999999999999999999999998654 35678899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+|++|++.++. .|++||+.+.. ..+..+..+.++ +.++.+ |+.........+||||||||++|||||++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 79999998532 233333322221 111111 22222333446799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47899999999999865 999999999999999999998643
No 185
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=367.86 Aligned_cols=218 Identities=24% Similarity=0.466 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC--------
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-------- 378 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~-------- 378 (922)
+.|+++||++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4599999999995 34699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhh-cCCCCCC
Q 002434 379 -----KLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLAL 447 (922)
Q Consensus 379 -----~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-ge~G~~L 447 (922)
....+|+.++||+|++.+|. .|++||+.++. .....+..+ .+.+.++.+ |+.... ......|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 13466789999999999997 69999998642 122221111 111222222 333332 4567789
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEe
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~ 525 (922)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 48999999999999886 999999999999999
Q ss_pred cCHHHHhhc
Q 002434 526 GTHDELLAT 534 (922)
Q Consensus 526 G~~~eL~~~ 534 (922)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998654
No 186
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=363.66 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=181.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC------CCCHHH
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK------NLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~------~~~~~~ 382 (922)
|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999953 46999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 383 LRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+|++|+|++|++.+|. .|++|||.++. ....++..+ .+.+.+..+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 7889999999999986 69999997531 122222111 122333333 45555566677999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998875 47999999999999865 99999999999999999988754
No 187
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=367.51 Aligned_cols=212 Identities=28% Similarity=0.462 Sum_probs=179.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC--CCCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~ 386 (922)
|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 78999999995 346999999999999999999999999999999999999999999999999985 3345567889
Q ss_pred ceEEecCCC--CccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 387 IGLVTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 387 i~~v~Q~~~--lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
|+||+|++. ++..|+.+|+.++. ..+.++ +.++++..++.+ .......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-----------FRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-----------HhcCCchhCCHHHHHHHHH
Confidence 999999986 56789999998752 223332 223333333322 2234567899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999855 999999999999999999988654
No 188
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=364.68 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 380 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 489999999995 34699999999999999999999999999999999999885 799999999998653 34
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.++|++|++.+|+.|++||+.++.. . +. +++.++++.+++.+. +..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE-------VKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 567889999999999999999999997631 1 22 223344444443222 22334556789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998766 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 189
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.5e-42 Score=358.70 Aligned_cols=201 Identities=26% Similarity=0.456 Sum_probs=170.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH---HHHhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~---~~lr~ 385 (922)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 469999999999999999999999999999999999999999999999999987754 34678
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
.++||+|++.+|. .|++||+.++. ..+.+ ++.++++..++.+ .......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-----------KHRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhcCHHHHHHHHH
Confidence 8999999999997 69999998763 12222 2333444433332 3334456899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
|||++++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 57899999999999876 999999999974
No 190
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=365.59 Aligned_cols=211 Identities=27% Similarity=0.396 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999995 346999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEecCCCC-ccccHHHHHhcCcC-C--C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPAL-LSLSIRDNIAYGRD-A--T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~l-f~~ti~eNi~~~~~-~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+ +..|++||+.++.. . + ++++.++++..+ ++.........||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD-----------LAHLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcC-----------CHhHhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 56899999988641 1 1 122333333333 3334445567899999999999999
Q ss_pred hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHH
Q 002434 461 VL------LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 461 l~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL 531 (922)
|+ .+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 4999999999999999999988
Q ss_pred hh
Q 002434 532 LA 533 (922)
Q Consensus 532 ~~ 533 (922)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=368.29 Aligned_cols=219 Identities=26% Similarity=0.433 Sum_probs=186.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCCC-HH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLK-LE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~~-~~ 381 (922)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 489999999995 35799999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHhhcceEEecCCCCccccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHH--hhccchhhhcCCCCCCCHHHHHHH
Q 002434 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
.+|+.|+|++|++.+|+.|++||+.++. ..+.+++.+.+. +.+.. +...+++.+.....+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ-----ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 6788999999999999999999998763 124444332221 11111 222233455677889999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988767899999999998765 999999999999999999998764
No 192
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.6e-42 Score=358.30 Aligned_cols=200 Identities=37% Similarity=0.627 Sum_probs=170.5
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++|++++|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999632 2569999999999999999999999999999999999999999999999999988877888899999
Q ss_pred EecCCC--CccccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 390 VTQEPA--LLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 390 v~Q~~~--lf~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
++|++. +++.|++||+.++. ..+..+ +.+.++.. |++..+......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV-----------GLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 999984 56789999998753 122222 22233332 33334455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
++++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 47899999999999987 99999999985
No 193
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-41 Score=380.38 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999995 346999999999999999999999999999999999999999999999999997654 4678899
Q ss_pred eEEecCCCCc-cccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf-~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
||+||++.++ ..|++||+.+.. ..+.++..+.++. +.+. ..|++..++.+ .+||||||||++|||||++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV----SDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhc
Confidence 9999999987 589999998632 2232222222211 1111 12344444444 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+.+++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 48999999999999866 999999999999999999998653
No 194
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=364.66 Aligned_cols=221 Identities=24% Similarity=0.416 Sum_probs=184.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~ 386 (922)
-|+++|+++.|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999988776554 456
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcC-CCH----------HHHH--HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRD-ATL----------DQIE--EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~----------~~~~--~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
++|++|++.+|. .|++||+.++.. ... ..+. +......+.+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 999999999997 599999998631 000 0000 000111223344443 566667778889999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
||++||||++.+|++|||||||++||+.++..+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 7899999999999865 9999999999999999999
Q ss_pred HHhh
Q 002434 530 ELLA 533 (922)
Q Consensus 530 eL~~ 533 (922)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8764
No 195
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-41 Score=376.82 Aligned_cols=228 Identities=19% Similarity=0.337 Sum_probs=186.1
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCCCHHHH
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~~~~~l 383 (922)
-|+++|++++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996422 346999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----hcceEEecCC--CCcc-ccHHHHHhcC----cCCCHHHHHH-HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 384 R----SQIGLVTQEP--ALLS-LSIRDNIAYG----RDATLDQIEE-AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 384 r----~~i~~v~Q~~--~lf~-~ti~eNi~~~----~~~~~~~~~~-~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
+ ++|+||+|+| .+++ .|+.+|+... ...+.++..+ +.+... ...|++++ ..++....+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~----~vgL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD----AVKMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HcCCCChH-HHhcCCcccCCHHH
Confidence 4 4799999999 4554 6888887542 1233333222 111111 11344433 33567888999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999875 999999999999999999
Q ss_pred HHHhhcC-cHHHH
Q 002434 529 DELLATG-DLYAE 540 (922)
Q Consensus 529 ~eL~~~~-~~~~~ 540 (922)
+++.+.. ..|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 9998753 34544
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=365.26 Aligned_cols=203 Identities=28% Similarity=0.383 Sum_probs=175.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 499999999995 347999999999999999999999999999999999999999999999998763 457789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+|++|++.+|+ .|++||+.++. ...++++.++++..++. ........+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-----------DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 79999999864 21234444555544443 3345556789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998863 37899999999998755 9999999999999988764
No 197
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=367.86 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=184.2
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
..|+++||+++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 3599999999996 3469999999999999999999999999999999999999999999999999988888888889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc-CC-------CH---HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR-DA-------TL---DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~-~~-------~~---~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
|+|++|++.+|. .|++||+.++. .. .+ +++.++++..++ +.........||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-----------THLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCChHHHHH
Confidence 999999998875 79999998763 11 11 223334443333 333445667999999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
++||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 7899999999998755 999999999999999999987
Q ss_pred hh
Q 002434 532 LA 533 (922)
Q Consensus 532 ~~ 533 (922)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 198
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.6e-41 Score=358.94 Aligned_cols=207 Identities=25% Similarity=0.341 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---H
Q 002434 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l 383 (922)
-|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 35999999999999999999999999999999999999999999999999998877643 2
Q ss_pred -hhcceEEecCCCCcc-ccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 384 -RSQIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 384 -r~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
++.++|++|++.+|. .|++||+.++. ..+ .+++.++++..++.+. .......||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKR-----------LDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHH
Confidence 357999999999987 69999998642 122 2233444444444333 333446899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
++|||||+.+|++|||||||++||+.+...+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 3 7899999999999888999999999999864
No 199
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=363.94 Aligned_cols=217 Identities=27% Similarity=0.474 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~~--~~ 380 (922)
.|+++||++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 378999999995 3469999999999999999999999999999999999864 4899999999998653 45
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---C-CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|+.++|++|++.+|+.|++||+.++. . .+. +++.++++.+++.+++.. .+...+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 67788999999999999999999998753 1 122 234445555555544432 23556789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998766 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 644
No 200
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=375.75 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCC-------CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH
Q 002434 308 NIEFRNVYFSYLSRP-------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~ 380 (922)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999996321 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhhcceEEecCCC--Ccc-ccHHHHHhcCc----CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 381 E---WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 381 ~---~lr~~i~~v~Q~~~--lf~-~ti~eNi~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
. .+|++|+||+|+|. |++ .|+.+|+.... ..+. +++.++++.+++. +.++ .....+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~----~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR------PEHY----DRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC------hHHh----cCCCcc
Confidence 4 46788999999994 554 69999986421 1222 2334444444432 1122 334578
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
||||||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 7899999999999975 9999999999999
Q ss_pred EecCHHHHhhcC-cHHHH
Q 002434 524 EMGTHDELLATG-DLYAE 540 (922)
Q Consensus 524 ~~G~~~eL~~~~-~~~~~ 540 (922)
|.|+.+++++.. ..|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999998753 34544
No 201
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.2e-41 Score=365.80 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 78999999995 347999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEecCCCC-ccccHHHHHhcCcC-C-------C---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 389 LVTQEPAL-LSLSIRDNIAYGRD-A-------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 389 ~v~Q~~~l-f~~ti~eNi~~~~~-~-------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
|++|++.+ +..|++||+.++.. . . .+++.++++..+ +..........||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE-----------LSHLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHH
Confidence 99999865 46899999988631 1 0 112233333332 333344566789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 4789999999999995 599999999999999999998764
No 202
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=368.72 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CC
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~ 379 (922)
..|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3599999999995 3469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhhcceEEecCCCCccccHHHHHhcCcC---CC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
...+|+.++||+|++.+|+.|++||+.++.. .. ++++.++++..++...+ ...+..+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHH
Confidence 5667889999999999998899999987531 11 22344444444432222 12345667899999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEE-EEeCCeEEEecCHHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIA-VMDEGRLFEMGTHDEL 531 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~-vl~~G~i~~~G~~~eL 531 (922)
|++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999988
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 653
No 203
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-41 Score=371.49 Aligned_cols=213 Identities=30% Similarity=0.474 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999952 46799999999999999999999999999999999999999999999999998776 67889999
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CC----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DA----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|||||+|.+++ .|++||+.|.. .. .++++.++++..++.+.- ......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999885 89999999853 21 245667777776654311 3345679999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-G-RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||+++|++|||||||++||+.++..+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998865 4 699999999999988 999999999999999999987543
No 204
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=375.31 Aligned_cols=224 Identities=18% Similarity=0.275 Sum_probs=182.6
Q ss_pred EEEEeEEEEeCCCCC-CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC----CCCcEEEECCEeCCCCCHHHH
Q 002434 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 309 i~~~~v~f~y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~----~~~G~I~i~g~~i~~~~~~~l 383 (922)
|+++|+++.|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999964322 369999999999999999999999999999999999998 489999999999998887765
Q ss_pred hh----cceEEecCCC--Ccc-ccHHHHHhc----CcCCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCC
Q 002434 384 RS----QIGLVTQEPA--LLS-LSIRDNIAY----GRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (922)
Q Consensus 384 r~----~i~~v~Q~~~--lf~-~ti~eNi~~----~~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS 448 (922)
++ .|+||+|+|. +++ .|+.+|+.. ..... .+++.++++..++.+. .........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999995 443 577666542 21122 2234444444444321 123456678999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEe
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~ 525 (922)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988753 7899999999999854 999999999999999
Q ss_pred cCHHHHhhcC-cHHHH
Q 002434 526 GTHDELLATG-DLYAE 540 (922)
Q Consensus 526 G~~~eL~~~~-~~~~~ 540 (922)
|+.+++.++. ..|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999998753 34543
No 205
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-41 Score=354.78 Aligned_cols=200 Identities=24% Similarity=0.386 Sum_probs=170.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999953 22 39999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC--C-----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD--A-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~--~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.++.. . .++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999997 599999987642 1 1234555555555544333 3345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998875 37899999999999866 9999999999998765
No 206
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=368.89 Aligned_cols=213 Identities=31% Similarity=0.484 Sum_probs=180.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC--CCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~ 386 (922)
|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 3469999999999999999999999999999999999999999999999999852 234567889
Q ss_pred ceEEecCC--CCccccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 387 i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
|+|++|++ .+|+.|++|||.++. ..+.+ ++.++++..++. ........+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHHHHHHHH
Confidence 99999998 478899999998764 12222 233333333332 22233456899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47899999999998875 999999999999999999998754
No 207
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=365.21 Aligned_cols=217 Identities=28% Similarity=0.464 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~~~ 380 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 599999999995 24699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC----CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+++.|+||+|++.+|+.|++||+.++.. ..+ +.+.++++.+++.+++. ......+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 677889999999999999999999987531 122 22344555555543332 234556789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEe-----CCeEEEec
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD-----EGRLFEMG 526 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~-----~G~i~~~G 526 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988778999999999999866 99999998 59999999
Q ss_pred CHHHHhhc
Q 002434 527 THDELLAT 534 (922)
Q Consensus 527 ~~~eL~~~ 534 (922)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998653
No 208
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-41 Score=358.06 Aligned_cols=197 Identities=26% Similarity=0.425 Sum_probs=165.2
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999953 46999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EecCCCC---ccccHHHHHhcCcCC--------C---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 390 VTQEPAL---LSLSIRDNIAYGRDA--------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 390 v~Q~~~l---f~~ti~eNi~~~~~~--------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
|+|++.+ ++.|++||+.++... . .+++.++++..++.+ .......+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-----------LADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHH
Confidence 9999986 568999999876421 1 123333444433332 23345568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
+||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 67899999999999865 9999999986 55554
No 209
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.3e-41 Score=344.01 Aligned_cols=172 Identities=38% Similarity=0.603 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999632 346999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
|++|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeE
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i 522 (922)
||||||++||+.++..+.+.|+++. +++|+|++||+++.++.||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998875 47899999999999988999999999974
No 210
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=356.54 Aligned_cols=209 Identities=24% Similarity=0.406 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+++|+. .+ .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 789999999952 22 399999999999999999999999999999999999999999999998776542 56899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC--C-----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD--A-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~--~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.++.. . .++++.++++..++.+.+.. ....||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR-----------LPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhC-----------CcccCCHHHHHHHHHHHH
Confidence 9999999997 599999987531 1 12345555555555444433 335799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
++++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988743 7899999999998865 9999999999999999999987643
No 211
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.8e-41 Score=357.27 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr~ 385 (922)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 347999999999999999999999999999999999999999999999999998776443 678
Q ss_pred cceEEecCCCCc-cccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALL-SLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf-~~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
.++|++|++.+| +.|++||+.++. ..+.++ +.++++..++. ........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-----------DKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCCchhCCHHHHHHHHH
Confidence 999999999875 689999998853 233333 22333333332 23344557899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||++++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999876 99999999999864
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=365.06 Aligned_cols=219 Identities=29% Similarity=0.438 Sum_probs=186.8
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCC----
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK---- 376 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~---- 376 (922)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 45699999999995 24699999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhhcceEEecCCCCccccHHHHHhcCcC---CC-----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCC
Q 002434 377 NLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (922)
Q Consensus 377 ~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~-----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS 448 (922)
..+...+++.|+|++|++.+|.+|++|||.++.. .. ++++.++++.+++.+ ++.+..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2345577889999999999999999999987631 11 234444554444332 33345567778999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
||||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778899999999999865 99999999999999999
Q ss_pred HHHHhhc
Q 002434 528 HDELLAT 534 (922)
Q Consensus 528 ~~eL~~~ 534 (922)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998643
No 213
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=364.52 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~~~ 380 (922)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999953 4699999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhhcceEEecCCCCcc-ccHHHHHhcCc---C-CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D-ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~-~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
..+|+.++|++|++.+|. .|++||+.++. . .+.+ ++.++++..++.+. ..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHH
Confidence 677889999999999987 79999998753 1 1222 22333333333222 1234456678899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh-ccCEEEEEe------CCeEEE
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD------EGRLFE 524 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~D~i~vl~------~G~i~~ 524 (922)
|||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877789999999999875 599999997 899999
Q ss_pred ecCHHHHhhc
Q 002434 525 MGTHDELLAT 534 (922)
Q Consensus 525 ~G~~~eL~~~ 534 (922)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
No 214
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.2e-41 Score=355.69 Aligned_cols=204 Identities=28% Similarity=0.505 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC--CCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~ 386 (922)
|+++||+++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999953 469999999999999999999999999999999999999999999999999853 345667889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
|+|++|++.+|. .|++||+.++. ..+.++..+. +.+.+..+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 79999998753 2222222111 12233332 444455566678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47899999999999865 999999999975
No 215
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-41 Score=364.38 Aligned_cols=217 Identities=29% Similarity=0.436 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~--~~~ 380 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 599999999995 24699999999999999999999999999999999999864 68999999999864 344
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C---CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
..+|+.|+|++|++.+|+.|+.|||.++.. . .++++.++++.+++.+.+. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 567889999999999998899999988641 1 1223344455544433332 23456678899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEe---------CCeEEE
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD---------EGRLFE 524 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~---------~G~i~~ 524 (922)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778899999999998865 99999998 899999
Q ss_pred ecCHHHHhhc
Q 002434 525 MGTHDELLAT 534 (922)
Q Consensus 525 ~G~~~eL~~~ 534 (922)
.|+.+++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998754
No 216
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-41 Score=360.04 Aligned_cols=210 Identities=31% Similarity=0.513 Sum_probs=179.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 478999999953 4699999999999999999999999999999999999999999999999999876543 67899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC---CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.++.. .+ ++++.++++..++.++ .......||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGY-----------ANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999996 599999987531 12 2233444444444433 334446899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999888653
No 217
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.7e-41 Score=379.21 Aligned_cols=201 Identities=24% Similarity=0.384 Sum_probs=171.6
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE----eCCCCCHHHHh----hcceEEecCC
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE----NIKNLKLEWLR----SQIGLVTQEP 394 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~----~i~~~~~~~lr----~~i~~v~Q~~ 394 (922)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+...++ ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 66666655543 5799999999
Q ss_pred CCcc-ccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 395 ALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 395 ~lf~-~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
.+|+ .|++||+.++. ..+. ++..++++..++.++ ......+||||||||++|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9997 89999999874 1222 233444555444333 233445799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|++.+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999988753 799999999999874 5999999999999999999999865
No 218
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=355.39 Aligned_cols=204 Identities=23% Similarity=0.422 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 57899999995 3469999999999999999999999999999999999999999999999988753 4677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.+|. .|++||+.++. ..+..+..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999987 69999998753 122221111 122333333 444455566778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998874 47899999999998865 9999999999998764
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=363.40 Aligned_cols=217 Identities=26% Similarity=0.369 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~--~~ 380 (922)
.+.++++++.|. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 388999999994 35799999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C---CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
..+|+.|+|++|++.+|+.|++|||.++.. . ..+++.++++.+++...+. ...++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHH
Confidence 467888999999999999999999998642 1 1234556666665544332 23456778999999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEe--------CCeEEEe
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD--------EGRLFEM 525 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~--------~G~i~~~ 525 (922)
++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778899999999998765 99999996 8999999
Q ss_pred cCHHHHhhc
Q 002434 526 GTHDELLAT 534 (922)
Q Consensus 526 G~~~eL~~~ 534 (922)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
No 220
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=361.22 Aligned_cols=217 Identities=27% Similarity=0.404 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-----~G~I~i~g~~i~~--~~~ 380 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 378999999995 347999999999999999999999999999999999999874 8999999999865 345
Q ss_pred HHHhhcceEEecCCCCcc-ccHHHHHhcCcC---C-CHHHHHHHHH----HHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGRD---A-TLDQIEEAAK----IAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~---~-~~~~~~~~~~----~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
..+|+.|+|++|++.+|. .|++||+.++.. . .+++..+.++ ..++.+. +++. ......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~----~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDR----LKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhh----hcCCcccCCHHH
Confidence 567889999999999987 699999987531 1 2333333222 1222111 2222 234567899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred Hhhc
Q 002434 531 LLAT 534 (922)
Q Consensus 531 L~~~ 534 (922)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=367.99 Aligned_cols=217 Identities=28% Similarity=0.438 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCCC--CH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--KL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~~--~~ 380 (922)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999952 469999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcC---C-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+|++++||+|++.+|+.|++|||.++.. . +. +++.++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 457889999999999998899999998631 1 11 1223333333332111 1233556788999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 764
No 222
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-41 Score=339.89 Aligned_cols=220 Identities=28% Similarity=0.425 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 387 (922)
++++|++..|. ..++|++|||++++||+++++|+||+||||+++.|+|+.+|.+|+|.++|.|+...++.. .|..|
T Consensus 4 L~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 78999999995 467999999999999999999999999999999999999999999999999999998766 47789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcCC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+||||.-.+|+ .||+||+.+|... .+++..+ ..+++..+-+|. +......++.+|||||+|.+||||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 99999999996 8999999988522 1111111 012222333453 555667889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcCc
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~~ 536 (922)
++|+|||||.+|-|.-.+.|.+.|+++.+ +-|+++|-++..... -+||.+||++|+|+.+|+.+||.++..
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 99999999999999999999999999874 559999999998765 599999999999999999999987643
No 223
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7e-41 Score=357.72 Aligned_cols=214 Identities=30% Similarity=0.470 Sum_probs=179.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 469999999999999999999999999999999999999999999999999876553 467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC---CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|+||++.+|+ .|++||+.++.. .+..+.. ..+.+.++.+ |+.........+|||||+||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999997 599999987642 2211111 1122333333 222233445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|+++||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988754 7899999999998765 999999999999999999998753
No 224
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.5e-41 Score=362.90 Aligned_cols=226 Identities=25% Similarity=0.417 Sum_probs=185.1
Q ss_pred cEEEEeEEEEeCCC------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH
Q 002434 308 NIEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~ 381 (922)
-|+++||+++|+.. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999531 134799999999999999999999999999999999999999999999999998765666
Q ss_pred HHhhcceEEecCCC--Ccc-ccHHHHHhcCc----CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 382 WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~--lf~-~ti~eNi~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
..++.|+||+|++. +++ .|+.+|+.+.. .... +++.++++..++.. . .......+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP------D----HASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh------H----HHhcCchhcCHH
Confidence 66778999999985 444 58999987532 1122 23444444444421 1 112334689999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
||||++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998875 37899999999999986 99999999999999999
Q ss_pred HHHHhhcC--cHHHHHHH
Q 002434 528 HDELLATG--DLYAELLK 543 (922)
Q Consensus 528 ~~eL~~~~--~~~~~l~~ 543 (922)
++++.... ..++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 234 TADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 99988653 44555554
No 225
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1e-40 Score=361.91 Aligned_cols=229 Identities=20% Similarity=0.301 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCC-----C
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNL-----K 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~-----~ 379 (922)
-|+++||+++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 389999999995 357999999999999999999999999999999999999986 49999999998653 3
Q ss_pred HHHHhhcceEEecCCCCcc-ccHHHHHhcCcC-CCH---H--HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRD-ATL---D--QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~---~--~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
...+++.++|++|++.+|. .|++||+.++.. ... . ..........+.+.+..+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 4567888999999999887 699999987631 000 0 000000011122233322 333334556678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~ 529 (922)
||++||||++.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 3789999999999865 59999999999999999999
Q ss_pred HHhhcCcHHHHHHH
Q 002434 530 ELLATGDLYAELLK 543 (922)
Q Consensus 530 eL~~~~~~~~~l~~ 543 (922)
++ ......+++.
T Consensus 239 ~~--~~~~~~~~~~ 250 (262)
T PRK09984 239 QF--DNERFDHLYR 250 (262)
T ss_pred Hh--ccHHHHHHHh
Confidence 86 2334444444
No 226
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=334.65 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|++.+++++|++ ...+++||||+++.||++||.|||||||||++++|..++.|++|+|++||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 688999999974 345899999999999999999999999999999999999999999999999988765 56889999
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+++-+.-|+. .|++|||.|.. +.+.. ++.+..+..++.+. .|+. ..+||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rR----v~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRR----VGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHH----HhhhchhhHHHHHHHHH
Confidence 9998888885 89999999753 33333 33333333333333 3334 44699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|++||++++||||||+||..+.+.+++.+.+++. ++++|+.||.++.++. ||+|+++++|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998875 9999999999999985 999999999999999999998764
No 227
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6e-41 Score=359.57 Aligned_cols=213 Identities=26% Similarity=0.390 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCCcEEEECCEeCCCCCHHHH-hh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWL-RS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~g~~i~~~~~~~l-r~ 385 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 57899999995 346999999999999999999999999999999999994 7999999999999988876654 44
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcC----------CCHHHHHHHHHHHHHHHhHHHhhccchhh-hcCCCC-CCCHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRD----------ATLDQIEEAAKIAHAHTFISSLEKGYETQ-VGRAGL-ALTEEQK 452 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~----------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~-vge~G~-~LSGGqk 452 (922)
.++||+|++.+|+ .|++||+.+... .+.++..+ .+.+.+..+ |++.. ...... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 5999999999987 689999976421 01111111 112222222 23221 222233 5999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~~ 529 (922)
||++||||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 47899999999999876 7999999999999999987
Q ss_pred HH
Q 002434 530 EL 531 (922)
Q Consensus 530 eL 531 (922)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 64
No 228
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=368.51 Aligned_cols=218 Identities=26% Similarity=0.455 Sum_probs=185.3
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEeCCC--CC
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-----~~~G~I~i~g~~i~~--~~ 379 (922)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999953 469999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHHhhcceEEecCCCCccccHHHHHhcCcCC---------------C-----HHHHHHHHHHHHHHHhHHHhhccchhh
Q 002434 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA---------------T-----LDQIEEAAKIAHAHTFISSLEKGYETQ 439 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~---------------~-----~~~~~~~~~~~~l~~~i~~l~~g~~t~ 439 (922)
...+|+.|+||+|++.+|+.|++||+.++... . ++++.++++.++ ++.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 56778899999999999999999999976310 0 112223333322 23345566
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEE-EEE
Q 002434 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYI-AVM 517 (922)
Q Consensus 440 vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i-~vl 517 (922)
+.....+||||||||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 77888999999999999999999999999999999999999999999999998777899999999999865 9997 578
Q ss_pred eCCeEEEecCHHHHhhc
Q 002434 518 DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 518 ~~G~i~~~G~~~eL~~~ 534 (922)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999988653
No 229
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=361.32 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=184.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEeCCC--CC
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LK 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-----~G~I~i~g~~i~~--~~ 379 (922)
+.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 35999999999953 36999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhcceEEecCCCCccccHHHHHhcCc---CC-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 380 ~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
...+|+.++|++|++.+|+.|++||+.++. .. +. +++.++++..++.+++. ...+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 557788999999999999999999998752 11 22 22334444444433332 23456778999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeC-----CeEE
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE-----GRLF 523 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~-----G~i~ 523 (922)
|||++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998863 48999999999998865 999999999 9999
Q ss_pred EecCHHHHhhc
Q 002434 524 EMGTHDELLAT 534 (922)
Q Consensus 524 ~~G~~~eL~~~ 534 (922)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 230
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=362.20 Aligned_cols=215 Identities=23% Similarity=0.346 Sum_probs=183.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC--------CcEEEECCEeCCCCCH
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT--------LGEVLLDGENIKNLKL 380 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~--------~G~I~i~g~~i~~~~~ 380 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999995 347999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhhcceEEecCCC-CccccHHHHHhcCcC-C-C-----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPA-LLSLSIRDNIAYGRD-A-T-----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~-lf~~ti~eNi~~~~~-~-~-----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+++.++|++|++. +|..|++||+.++.. . . .++.. ..+.+.++.+ |+++.++....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-----EIAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHH-----HHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 888888999999986 567999999988631 1 0 01111 1112223332 566667778889999999
Q ss_pred HHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCC
Q 002434 453 IKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEG 520 (922)
Q Consensus 453 QRiaiARAl~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G 520 (922)
||++||||++ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999988753 789999999999986 49999999999
Q ss_pred eEEEecCHHHHhh
Q 002434 521 RLFEMGTHDELLA 533 (922)
Q Consensus 521 ~i~~~G~~~eL~~ 533 (922)
+|++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999998865
No 231
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-41 Score=360.15 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEeCCC--CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~--~---~~G~I~i~g~~i~~--~~~ 380 (922)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 389999999995 2469999999999999999999999999999999999975 5 58999999999864 344
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc---CC-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
..+++.++|++|++.+|+.|++||+.++. .. .+ +++.++++.+++.. ++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHH
Confidence 56778999999999999999999998752 11 11 22233333333322 222344566789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999888
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 654
No 232
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=371.93 Aligned_cols=224 Identities=21% Similarity=0.263 Sum_probs=183.4
Q ss_pred EEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC----CCCcEEEECCEeCCCCCHHHH
Q 002434 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 309 i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~----~~~G~I~i~g~~i~~~~~~~l 383 (922)
|+++|++++|+.+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7999999999642 23469999999999999999999999999999999999986 589999999999988887655
Q ss_pred h----hcceEEecCCC--Ccc-ccHHHHHhcCc---CC------C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCC
Q 002434 384 R----SQIGLVTQEPA--LLS-LSIRDNIAYGR---DA------T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443 (922)
Q Consensus 384 r----~~i~~v~Q~~~--lf~-~ti~eNi~~~~---~~------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~ 443 (922)
+ +.|+||+|+|. +++ .||.+|+.... .. . .+++.++++..++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3 47999999997 333 78999996421 00 1 1234444444444321 1123445
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCC
Q 002434 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEG 520 (922)
Q Consensus 444 G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G 520 (922)
..+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 578999999999999999999999999999999999999999999998754 7899999999999966 9999999999
Q ss_pred eEEEecCHHHHhhc-CcHHHH
Q 002434 521 RLFEMGTHDELLAT-GDLYAE 540 (922)
Q Consensus 521 ~i~~~G~~~eL~~~-~~~~~~ 540 (922)
+|++.|+.+++.+. ...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 99999999999865 345544
No 233
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1e-40 Score=368.79 Aligned_cols=200 Identities=25% Similarity=0.405 Sum_probs=170.8
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccH
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSI 401 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti 401 (922)
+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++|+|++|++.+|. .|+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcH
Confidence 3579999999999999999999999999999999999999999999999999876 34567889999999999986 699
Q ss_pred HHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCC
Q 002434 402 RDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (922)
Q Consensus 402 ~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpt 474 (922)
+||+.+.. ..+.. ++.++++..+ ++........+||||||||++|||||+++|++|||||||
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFE-----------LGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99998743 12222 2333333333 333334455789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 475 GGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 475 s~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999998875 47899999999999876 999999999999999999998653
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-40 Score=350.35 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=171.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++||+++|+ ..++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~-----~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYE-----HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeC-----CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 36899999995 1468999999999999999999999999999999999999999999999987644 3577899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc--CC-----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR--DA-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~--~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
||+|++.+|. .|++||+.++. .. .++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR-----------LPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhC-----------CcccCCHHHHHHHHHHHH
Confidence 9999999987 69999998642 11 12344555555555444333 335799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
++++|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 7899999999998765 99999999999999875
No 235
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=375.58 Aligned_cols=210 Identities=27% Similarity=0.452 Sum_probs=179.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHHHHh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~~lr 384 (922)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999952 2 23 99999999999999999999999999999999999999999999998653 234567
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++|+||+|++.+|+ .|++|||.++. ....+++.++++..++.++ ......+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL-----------LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 79999999874 3334555566655554433 34445689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 7899999999998765 9999999999999999999998653
No 236
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.1e-40 Score=357.28 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe-----CCCCCHHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-----IKNLKLEW 382 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~-----i~~~~~~~ 382 (922)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3899999999953 469999999999999999999999999999999999999999999999998 77766544
Q ss_pred ----HhhcceEEecCCC--Cc-cccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 383 ----LRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 383 ----lr~~i~~v~Q~~~--lf-~~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
+++.++||+|++. ++ ..|+.+|+.+.. ..+..+..+ ..+++++.++-+ ++.....+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 34 368899986531 111122211 234455555322 245677889999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||++||||++++|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999975 999999999999999999
Q ss_pred HHHhhc
Q 002434 529 DELLAT 534 (922)
Q Consensus 529 ~eL~~~ 534 (922)
+++..+
T Consensus 237 ~~~~~~ 242 (258)
T PRK11701 237 DQVLDD 242 (258)
T ss_pred HHHhcC
Confidence 998754
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=358.33 Aligned_cols=217 Identities=27% Similarity=0.454 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC------EeCCCCCHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG------ENIKNLKLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g------~~i~~~~~~ 381 (922)
-|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 499999999995 35799999999999999999999999999999999999999997666665 667667777
Q ss_pred HHhhcceEEecCCCCcc-ccHHHHHhcCc---CC-CHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR---DA-TLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~-~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.+|+.++|++|++.+|. .|++||+.++. .. .+++. .++++..++..++ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 88999999999999987 59999999753 11 22232 3333333332221 1234556788999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL 531 (922)
||++||||++.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999998
Q ss_pred hhc
Q 002434 532 LAT 534 (922)
Q Consensus 532 ~~~ 534 (922)
.+.
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 765
No 238
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.2e-40 Score=360.10 Aligned_cols=227 Identities=23% Similarity=0.389 Sum_probs=188.6
Q ss_pred EEEEeEEEEeCCC------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH--
Q 002434 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-- 380 (922)
Q Consensus 309 i~~~~v~f~y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-- 380 (922)
|+++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999631 13579999999999999999999999999999999999999999999999999987765
Q ss_pred -HHHhhcceEEecCCC--Cc-cccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHH
Q 002434 381 -EWLRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQ 451 (922)
Q Consensus 381 -~~lr~~i~~v~Q~~~--lf-~~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGq 451 (922)
..+|+.++|++|++. ++ ..|+.||+.+.. ..+.+ .....+++.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 346789999999984 44 479999986532 11111 1122334444443 6653 4567788999999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||++||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 7899999999999975 999999999999999999
Q ss_pred HHHhhcCcHHHHHH
Q 002434 529 DELLATGDLYAELL 542 (922)
Q Consensus 529 ~eL~~~~~~~~~l~ 542 (922)
+++...++.|...+
T Consensus 237 ~~~~~~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTFSSPAGRVL 250 (268)
T ss_pred hhccCCCCHHHHHH
Confidence 99987666554433
No 239
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=352.85 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=190.3
Q ss_pred cEEEEeEEEEeCCCCC---------------------CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc
Q 002434 308 NIEFRNVYFSYLSRPE---------------------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~---------------------~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G 366 (922)
.|+++||++-|..+++ .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4888999888854321 1238999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHh----hcceEEecCCCCcc-ccHHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhc
Q 002434 367 EVLLDGENIKNLKLEWLR----SQIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 367 ~I~i~g~~i~~~~~~~lr----~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
+|+++|.|+..++.++|| ++++.|+|+..||+ .||.||..||- ..+ +++..++++.+||+.|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988874 57999999999996 89999999995 233 3345667778888888777765
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchh-hcc
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNA 511 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~ 511 (922)
+||||+|||+.|||||..||+|||+|||+|||||--+..+++-|.++. -+||+|+|||++++. +-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 699999999999999999999999999999999999999998887664 379999999999875 559
Q ss_pred CEEEEEeCCeEEEecCHHHHhhcC
Q 002434 512 DYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 512 D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|||.+|++|+|++.||++|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999764
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.5e-40 Score=352.77 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC---CCCcEEEECCEeCCCCCHHHHh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~---~~~G~I~i~g~~i~~~~~~~lr 384 (922)
+.++||+|+|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997532 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hcceEEecCCCCccc-cHHHHHhcCcC-CCHHHHHHHHHHHHHHH-hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 385 SQIGLVTQEPALLSL-SIRDNIAYGRD-ATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+.++|++|++.+|+. |++||+.++.. .......+.......+. .+..+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999985 99999997531 10000001111111111 12221 333334456689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCc-chh-hccCEEEEEeCCeEEEec
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRL-SLI-RNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~-~~~D~i~vl~~G~i~~~G 526 (922)
+++|++|||||||++||+.++..+.+.|+++. +++|+|++||++ +.+ +.||+|++|++|+++++|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998874 478999999998 354 569999999999999876
No 241
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=353.69 Aligned_cols=209 Identities=28% Similarity=0.464 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999952 38999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc-C--CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR-D--ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~-~--~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
|++|++.+|. .|++||+.++. . .+.. ++.++++..++.++ +.....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-----------LNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------HhcCcccCCHHHHHHHHHHHH
Confidence 9999999985 89999998753 1 1222 23344444444333 334456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988753 8999999999998875 999999999999999999988754
No 242
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.8e-40 Score=354.89 Aligned_cols=223 Identities=23% Similarity=0.349 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC----CCcEEEECCEeCCCCCHHHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~----~~G~I~i~g~~i~~~~~~~l 383 (922)
.|+++|++++| + +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred hhcceEEecCCC-Ccc--ccHHHHHhcC-----cCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 384 RSQIGLVTQEPA-LLS--LSIRDNIAYG-----RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 384 r~~i~~v~Q~~~-lf~--~ti~eNi~~~-----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
++.|+||+|++. .|. .|+.+|+.+. ....++++.++++..++.+. ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 6888887542 22233445555555544321 2345667789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988743 7899999999999865 9999999999999999999987
Q ss_pred hcC--cHHHHHHHh
Q 002434 533 ATG--DLYAELLKC 544 (922)
Q Consensus 533 ~~~--~~~~~l~~~ 544 (922)
... ...+.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 653 234444443
No 243
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-40 Score=344.56 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=164.4
Q ss_pred EEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC---CCCcEEEECCEeCCCCCHHHHh
Q 002434 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~---~~~G~I~i~g~~i~~~~~~~lr 384 (922)
+.++||+|.|+.. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999853 35679999999999999999999999999999999999999 89999999999988765 4567
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+.++|++|++.+|. .|++|||.++.... ..+....||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 88999999998886 69999998753110 223446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecC-cchh-hccCEEEEEeCCeEEEec
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARR-LSLI-RNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~-l~~~-~~~D~i~vl~~G~i~~~G 526 (922)
+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+++|+ .+.+ +.||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 4677777665 4565 559999999999998765
No 244
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-40 Score=356.15 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999952 4699999999999999999999999999999999999999999999999988643 24689
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.+|+ .|++||+.++. .....+..+ .+.+.+..+ |++........+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE-----IAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 79999998753 122221111 122233332 333334456678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe--CCeEEEecCHH
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD--EGRLFEMGTHD 529 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~--~G~i~~~G~~~ 529 (922)
|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|+|+++++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998873 37999999999998865 99999998 59999988753
No 245
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.8e-40 Score=348.87 Aligned_cols=204 Identities=27% Similarity=0.416 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 47899999995 347999999999999999999999999999999999999999999999999875422 24799
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.+|. .|++||+.++. ..+++++.++++..++.+.. .....+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 79999998643 23445556666555554332 233467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+..+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 47899999999998854 99999999999999998765
No 246
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.5e-40 Score=349.56 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH---HHh
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~---~lr 384 (922)
|+++|+++.|++.. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25699999999999999999999999999999999999999999999999999876643 467
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcC----CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+.|+|++|++.+|. .|+.||+.++.. .+.++..+. +.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999997 799999987641 222222211 12223332 3444444555689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeE
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i 522 (922)
|++++|++|||||||++||+.++..+.+.|+++. .++|+|++||+++..+.||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999998875 37999999999998777999999999986
No 247
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.7e-41 Score=332.09 Aligned_cols=223 Identities=23% Similarity=0.380 Sum_probs=187.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~ 386 (922)
.+..+|+.++|. .++|++||||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|+..++.... |-.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 588999999995 4579999999999999999999999999999999999999999999999999999998654 556
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
|||+||||.+|. .||+|||..--+..........++..++..++.+ .+...-...|..||||||+|+-|||||..+|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 999999999996 7999999875433222222233333333444433 3445556788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe-cCc-chhhccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA-RRL-SLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it-H~l-~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
+.++||||++++||.+-..|++.++.++....-|+|| |.. +++.-|||.+++.+|+|..+|+++|+.++.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999887544455555 886 678889999999999999999999998764
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-40 Score=334.47 Aligned_cols=170 Identities=33% Similarity=0.538 Sum_probs=157.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999953 36999999999999999999999999999999999999999999999999987765 56788999
Q ss_pred EEecCCCCccc-cHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 389 LVTQEPALLSL-SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 389 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
|++|++.+|.+ |++||+. ||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999999874 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeE
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRL 522 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i 522 (922)
|||||||++||+.+...+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999998875 4689999999999887 4999999999974
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.8e-40 Score=368.51 Aligned_cols=211 Identities=29% Similarity=0.441 Sum_probs=175.8
Q ss_pred eEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC----HHHHhhcce
Q 002434 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWLRSQIG 388 (922)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~----~~~lr~~i~ 388 (922)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 88999952 23 5 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
||+|++.+|+ .|++||+.++. .....+.. ..+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999996 69999999874 22211111 1112223332 45555566678899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
+|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999988753 7899999999998865 9999999999999999999987653
No 250
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-40 Score=332.71 Aligned_cols=171 Identities=50% Similarity=0.796 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++. +.++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999642 236999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
|++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999998877899999999999998899999999985
No 251
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-40 Score=334.94 Aligned_cols=172 Identities=35% Similarity=0.595 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC--HHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~--~~~lr~~ 386 (922)
|+++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999953 46999999999999999999999999999999999999999999999999998876 5677889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
++|++|++.+|. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999885 6999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999988764 5899999999999985 99999999985
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=343.13 Aligned_cols=203 Identities=25% Similarity=0.396 Sum_probs=169.2
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHHHHhh
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLRS 385 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~~lr~ 385 (922)
++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+++
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 89999953 334 99999999 99999999999999999999999999999999999988643 2345678
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
.++|++|++.+|. .|++||+.++.. ...++ ....+.++++.+ |++.........||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999999999985 799999987642 22111 111223344443 55555667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+++++|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999988743 7899999999998865 9999999999999876
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.8e-40 Score=338.47 Aligned_cols=183 Identities=28% Similarity=0.423 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCC---CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCCcEEEECCEeCCCCCHHH
Q 002434 308 NIEFRNVYFSYLSR---PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 308 ~i~~~~v~f~y~~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~g~~i~~~~~~~ 382 (922)
.|+++||+|+|++. .+.++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999641 0257999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 383 LRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+++.++|++|++.+|. .|++||+.++.. +. .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--------------~~-------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--------------LR-------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--------------hc-------------------cCCHHHHHHHHHHHHH
Confidence 7788999999999886 699999965321 00 7999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcc-hhh-ccCEEEEEeCCeEEEec
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLS-LIR-NADYIAVMDEGRLFEMG 526 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~~-~~D~i~vl~~G~i~~~G 526 (922)
+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 4889999999996 454 59999999999998764
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-39 Score=350.55 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe-----CCCCCHHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-----IKNLKLEW 382 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~-----i~~~~~~~ 382 (922)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999953 468999999999999999999999999999999999999999999999987 76666543
Q ss_pred ----HhhcceEEecCCC--Cc-cccHHHHHhcCc---C-CCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHH
Q 002434 383 ----LRSQIGLVTQEPA--LL-SLSIRDNIAYGR---D-ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEE 450 (922)
Q Consensus 383 ----lr~~i~~v~Q~~~--lf-~~ti~eNi~~~~---~-~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGG 450 (922)
+++.|+|++|++. ++ ..|+.+|+.+.. . ....+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 33 468899986421 1 111111 12344556665 343 4667788899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 37899999999999875 99999999999999999
Q ss_pred HHHHhhc
Q 002434 528 HDELLAT 534 (922)
Q Consensus 528 ~~eL~~~ 534 (922)
++++...
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9998754
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-40 Score=337.87 Aligned_cols=182 Identities=23% Similarity=0.403 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCCcEEEECCEeCCCCCHHHHh
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~g~~i~~~~~~~lr 384 (922)
.|+++|++|.|+++. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999996421 257999999999999999999999999999999999986 489999999999885 5677
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
++++|++|++.+|. .|++||+.++.. ++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhc
Confidence 88999999998887 699999986320 00 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch--hhccCEEEEEeC-CeEEEec
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDE-GRLFEMG 526 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~D~i~vl~~-G~i~~~G 526 (922)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++. .+.||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998875 47899999999984 466999999999 9999865
No 256
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-39 Score=333.24 Aligned_cols=172 Identities=27% Similarity=0.438 Sum_probs=157.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
-|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999988 7999999999999999999999999999999999999999999999999988764 456788
Q ss_pred ceEEecCC---CCc-cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEP---ALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~---~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++|++|++ .++ ..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344 5899999976421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998874 47899999999998877 999999999974
No 257
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-39 Score=346.60 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEEC---CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 389999999995 34699999999999999999999999999999999999999999999987 2479
Q ss_pred eEEecCCCCcc---ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 388 GLVTQEPALLS---LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 388 ~~v~Q~~~lf~---~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
+|++|++.++. .|+++|+.+....+++++.++++..++.+.+. .....||||||||++||||++++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998764 48999987654445667777777777655443 23467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcCcHHHHH
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l 541 (922)
|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++ +|++.|+++++.. ...|.++
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~ 216 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISM 216 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHH
Confidence 999999999999999999999999988753 7899999999999855 999999965 7999999999864 3445555
Q ss_pred H
Q 002434 542 L 542 (922)
Q Consensus 542 ~ 542 (922)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
No 258
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=353.68 Aligned_cols=209 Identities=22% Similarity=0.341 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999962 3579999999999999999999999999999999999999999999999998752 1223469
Q ss_pred eEEecCCCC---ccccHHHHHhcCcC-------CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 388 GLVTQEPAL---LSLSIRDNIAYGRD-------AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 388 ~~v~Q~~~l---f~~ti~eNi~~~~~-------~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
+|++|++.+ +..++++|+.++.. .. ++++.++++..++.+ .......+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-----------FRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHH
Confidence 999999865 45689999876421 01 122333444444332 223345679999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 47899999999988755 9999777 8999999999998
Q ss_pred hh
Q 002434 532 LA 533 (922)
Q Consensus 532 ~~ 533 (922)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 259
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=369.84 Aligned_cols=225 Identities=27% Similarity=0.440 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCC--------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe--CCC
Q 002434 308 NIEFRNVYFSYLSR--------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN--IKN 377 (922)
Q Consensus 308 ~i~~~~v~f~y~~~--------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~--i~~ 377 (922)
-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| +..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 23468999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHHhhcceEEecCCCC--cc-ccHHHHHhcCc----CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 378 LKLEWLRSQIGLVTQEPAL--LS-LSIRDNIAYGR----DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 378 ~~~~~lr~~i~~v~Q~~~l--f~-~ti~eNi~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
-+...+|+++-+|+|||+- -+ .||+++|.-.- ... .+++.+.++..++... ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 3345678899999999973 33 89999997431 111 1234444555554321 34455678
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
||||||||+||||||..+|++||+|||||+||+.+++.+.+.|+++.+ |-|.|+|||+++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988754 7899999999999988 9999999999999
Q ss_pred EecCHHHHhhc-CcHHHHHH
Q 002434 524 EMGTHDELLAT-GDLYAELL 542 (922)
Q Consensus 524 ~~G~~~eL~~~-~~~~~~l~ 542 (922)
|.|+.+++.+. ...|.+.+
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999998876 45666544
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-39 Score=326.01 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=151.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 578999999963 246999999999999999999999999999999999999999999999883 5899
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
|++|++.+++.|++||+.++ ...+||||||||++||||++++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999764 24689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
||||||++||+.+++.+.+.++++ ++|+|++||+++....||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999876 689999999998888899999998763
No 261
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.7e-39 Score=346.86 Aligned_cols=217 Identities=26% Similarity=0.374 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC--CCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~--~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
.|+++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVN---ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeC---CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 389999999995 34699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -cceEEecCCCCcc-ccHHHHHhcCcCC-------CHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCC-CCCHHHHHH
Q 002434 386 -QIGLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGL-ALTEEQKIK 454 (922)
Q Consensus 386 -~i~~v~Q~~~lf~-~ti~eNi~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~-~LSGGqkQR 454 (922)
.++|++|++.+|+ .|+.+|+.++... .+.+..+.. ..+.+.+..+ |+. +.+..... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 4899999999987 5899998764210 000000000 0111222221 222 23344444 599999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~~eL 531 (922)
++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998875 47899999999998875 899999999999999998843
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.5e-39 Score=334.17 Aligned_cols=185 Identities=32% Similarity=0.468 Sum_probs=163.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC--CCCCCcEEEECCEeCCCCCHHHH-hh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWL-RS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~ 385 (922)
++++|++++|+ +.++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVG---GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeC---CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 47899999995 34699999999999999999999999999999999999 58999999999999998876554 55
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
.++|++|++.+|+ .|+++|+ .. ...+||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcC
Confidence 6999999999987 4666554 00 1147999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh--ccCEEEEEeCCeEEEecCHHHHh
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR--NADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~--~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998875 4789999999999988 69999999999999999 44453
No 263
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7e-39 Score=344.70 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=170.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCCcEEEECCEeCCCCCHHHHh-h
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWLR-S 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~g~~i~~~~~~~lr-~ 385 (922)
|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+....+ .
T Consensus 2 i~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVE---DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 78999999996 346999999999999999999999999999999999994 79999999999999888776654 5
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc-CCCHHHHHHHHHHHH----HHHhHH--HhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAH----AHTFIS--SLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~-~~~~~~~~~~~~~~~----l~~~i~--~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
.++|++|++.++. .|..+++.+.. ........+.+...+ +.+.++ .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 7999999998775 35555543211 000000000001111 112222 23433333211 13799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCHHHH
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~~eL 531 (922)
|||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999988754 7899999999999887 899999999999999998854
No 264
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.2e-39 Score=338.69 Aligned_cols=193 Identities=25% Similarity=0.408 Sum_probs=162.0
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH----HHHhhc
Q 002434 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRSQ 386 (922)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~----~~lr~~ 386 (922)
++||++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFG---DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEEC---CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 478999995 3469999999999999999999999999999999999999999999999999765432 245678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
++|++|++.+|. .|++||+.++.. ... +++.++++..++ +........+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-----------NLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc-----------hhhhcCChhhCCHHHHHHHHHH
Confidence 999999999996 799999987531 121 223333333333 3334455678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM 517 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl 517 (922)
|||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999988889999875
No 265
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=331.43 Aligned_cols=220 Identities=29% Similarity=0.449 Sum_probs=188.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i 387 (922)
++.++++++|. ...+++||||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|.||..+++... |..|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 67899999994 4679999999999999999999999999999999999999999999999999999998775 5569
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcCCC------------HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRDAT------------LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~~~------------~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
+--+|.+.+|+ .|+.||+..+.... ..+..++.++| .+.++.+ |++..-.+...+||+||++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 99999999996 89999999873211 11222333222 1223322 56666677778999999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
+-|||||..+|++|+||||.++|.+.....+.+.|+++.+ +.|+++|-|+++.+.. ||||+||+.|+++.+|+|+|.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999875 4899999999999877 999999999999999999998
Q ss_pred hhcC
Q 002434 532 LATG 535 (922)
Q Consensus 532 ~~~~ 535 (922)
.++.
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 7653
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.3e-39 Score=329.41 Aligned_cols=177 Identities=29% Similarity=0.490 Sum_probs=157.9
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999953 469999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEE
Q 002434 390 VTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469 (922)
Q Consensus 390 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ili 469 (922)
++| +++..++.+++ .....+||||||||++||||++++|+++|
T Consensus 78 ~~q--------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ--------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH--------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 44444444332 23457899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEec
Q 002434 470 LDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G 526 (922)
|||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999988754 789999999999984 59999999999998754
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-38 Score=342.43 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=174.3
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 279999999999999999999999999999999999865 9999999999988888888888999
Q ss_pred EecCCCCc-cccHHHHHhcCcC--CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc---
Q 002434 390 VTQEPALL-SLSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL--- 463 (922)
Q Consensus 390 v~Q~~~lf-~~ti~eNi~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~--- 463 (922)
++|++.++ ..|+++|+.++.. .+.++.. ..+++.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99998654 6899999998742 1211111 1122333333 44444556678899999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 464 ----NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 464 ----~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 5789999999999765 499999999999999999998864
No 268
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-39 Score=340.77 Aligned_cols=224 Identities=27% Similarity=0.439 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-C----CCcEEEECCEeCCCCCHHH
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-P----TLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-~----~~G~I~i~g~~i~~~~~~~ 382 (922)
++++|++.+|+... ...+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997532 2579999999999999999999999999999999999998 4 5799999999999999876
Q ss_pred Hh----hcceEEecCCC-Ccc--ccHHHHHh----cCcCC-CH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 383 LR----SQIGLVTQEPA-LLS--LSIRDNIA----YGRDA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 383 lr----~~i~~v~Q~~~-lf~--~ti~eNi~----~~~~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
+| +.|++|+|+|. -|| .||.+-+. ..... +. ++..+.++.+++.+- +..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 47999999985 243 56655443 22222 22 244555555554321 1223344568
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
||||||||+.||-|++.+|++||.||||+|||..++++|.+.|+++. .+.|+|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998886 48899999999998866 9999999999999
Q ss_pred EecCHHHHhhcC-cHHHH
Q 002434 524 EMGTHDELLATG-DLYAE 540 (922)
Q Consensus 524 ~~G~~~eL~~~~-~~~~~ 540 (922)
|.|+.++++++. ..|.+
T Consensus 234 E~g~~~~i~~~P~HPYT~ 251 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTR 251 (316)
T ss_pred EeCCHHHHhcCCCChHHH
Confidence 999999999863 34544
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-38 Score=377.58 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHh-hc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr-~~ 386 (922)
-|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 499999999995 34699999999999999999999999999999999999999999999999999887766654 46
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++||+|++.+|. .|++||+.++.... ++++.++++..+ ++........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG-----------CQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcC-----------CCccccCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 69999999875211 123333333333 332334455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998874 47899999999998865 99999999999999999998764
No 270
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.6e-39 Score=340.98 Aligned_cols=199 Identities=29% Similarity=0.402 Sum_probs=165.1
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC----CCcEEEECCEeCCCCCHHHHhhcceEEecCCC-Ccc--
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LLS-- 398 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~----~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~-- 398 (922)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.|+|++|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998654 223468999999995 343
Q ss_pred ccHHHHHhcCc----CCC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEe
Q 002434 399 LSIRDNIAYGR----DAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (922)
Q Consensus 399 ~ti~eNi~~~~----~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLD 471 (922)
.|+.+|+.+.. ... .+++.++++..++. ++ ++........||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 69999986532 111 12233333333332 11 24456677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 472 EVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 472 Epts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999988753 7899999999999865 999999999999999999998754
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=383.71 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCCC--------CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC
Q 002434 308 NIEFRNVYFSYLSRP--------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~--------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~ 379 (922)
-|+++|+++.|+.+. ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996321 246999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhhcceEEecCCC--Ccc-ccHHHHHhcCc---CC-CHH----HHHHHHHHHHHHHhHHHhhccch-hhhcCCC
Q 002434 380 LE---WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR---DA-TLD----QIEEAAKIAHAHTFISSLEKGYE-TQVGRAG 444 (922)
Q Consensus 380 ~~---~lr~~i~~v~Q~~~--lf~-~ti~eNi~~~~---~~-~~~----~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G 444 (922)
.. .+|++|+||+|+|. +++ .|+.||+.++. .. ..+ ++.+.++.. |++ .......
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~-----------gL~~~~~~~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV-----------GLLPEHAWRYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-----------CCCHHHhhCCc
Confidence 43 35778999999983 664 79999997642 11 121 223333333 332 2234455
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999988743 7899999999999876 99999999999
Q ss_pred EEEecCHHHHhhc-CcHHHH
Q 002434 522 LFEMGTHDELLAT-GDLYAE 540 (922)
Q Consensus 522 i~~~G~~~eL~~~-~~~~~~ 540 (922)
|++.|+.+++... ...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 9999999999764 334543
No 272
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-38 Score=319.14 Aligned_cols=159 Identities=30% Similarity=0.494 Sum_probs=148.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i 387 (922)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999963 479999999999999999999999999999999999999999999999999988876 4467789
Q ss_pred eEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 388 GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999998874 47899999999998765 99999999999975
No 273
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=315.72 Aligned_cols=212 Identities=24% Similarity=0.386 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+.+|++++-. .+.+|+++||+++|||.+||+||||+|||||++.|+|.+.|++|++.++|.++..+++.++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899999874 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-ccccHHHHHhcCc-CC----C--HHH--HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 389 LVTQEPAL-LSLSIRDNIAYGR-DA----T--LDQ--IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 389 ~v~Q~~~l-f~~ti~eNi~~~~-~~----~--~~~--~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
++||+..+ |+-|++|-+.+|+ .. . +++ ..+++.++++. .|.. ..-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~----~la~-------R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS----GLAG-------RDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh----hhhc-------cchhhcCchHHHHHHHH
Confidence 99999987 8999999999997 21 1 222 33444444443 3322 22357999999999999
Q ss_pred Hhhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHH
Q 002434 459 RAVLL------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 459 RAl~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~e 530 (922)
|.|.+ ++++|+||||||+||...+..+++..+++. ++..|+.|-|+|+... .||||++|++||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99975 445899999999999999999999998875 5788999999999865 599999999999999999999
Q ss_pred Hhhc
Q 002434 531 LLAT 534 (922)
Q Consensus 531 L~~~ 534 (922)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8865
No 274
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2e-38 Score=330.30 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD---GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC---CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 47899999995 346999999999999999999999999999999999999999999999999986544 46788999
Q ss_pred EEecCCCCc-cccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 389 LVTQEPALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
|++|++.++ +.|++||+.+.. ...++++.++++..++.++. .....+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 589999998865 33556666676766664332 22346799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchh-hccCEEEEE
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVM 517 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~-~~~D~i~vl 517 (922)
+|||||||++||+.+++.+.+.|+++. +++|+|++||+...+ ..+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 478999999987654 559999876
No 275
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=308.67 Aligned_cols=192 Identities=26% Similarity=0.412 Sum_probs=170.1
Q ss_pred CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccH
Q 002434 322 PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (922)
Q Consensus 322 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 401 (922)
.+.++|+|+||++.+||.++|.||||||||||++.++-+.+|++|++++.|+|++.++++.+|++|+||.|.|.||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCc-----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCC
Q 002434 402 RDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (922)
Q Consensus 402 ~eNi~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~ 476 (922)
.||+.|.- ..+.....+.++.+++ -++.+..+..+||||+|||+||+|-|.--|+||+|||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 99999852 3333333333333333 24566778889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEecCcch-hhccCEEEEEeCCeEE
Q 002434 477 LDFEAERAVQEALDLLM--LGRSTIIIARRLSL-IRNADYIAVMDEGRLF 523 (922)
Q Consensus 477 LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~~~~D~i~vl~~G~i~ 523 (922)
||+.+.+.|.+.|.++. ++..++.|||+... ++.+|+++-+..|++-
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999998875 57889999999877 8889999999998863
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=375.96 Aligned_cols=215 Identities=25% Similarity=0.383 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC--CCcEEEECCEeCCCCCHHH-Hh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEW-LR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~i~~~~~~~-lr 384 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 389999999995 34799999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+.++||+|++.+|. .|++||+.++.. .+.++..+. +.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998886 699999998642 122222111 22233333 33333445567899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999998874 57899999999998865 9999999999999999988864
No 277
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-38 Score=339.41 Aligned_cols=193 Identities=27% Similarity=0.416 Sum_probs=160.0
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHH
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNI 405 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi 405 (922)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 7999999
Q ss_pred hcCc-----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH
Q 002434 406 AYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 406 ~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~ 480 (922)
.++. ..++++..+. +.+.++.+ |++.........||||||||++||||++.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI-----VEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHHH-----HHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8752 2222221111 11222222 3333444556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 481 AERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 481 ~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999998864 37899999999998765 999999999999999876655
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.1e-38 Score=338.29 Aligned_cols=196 Identities=27% Similarity=0.391 Sum_probs=159.3
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEe-cCCCCc-ccc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT-QEPALL-SLS 400 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~-Q~~~lf-~~t 400 (922)
++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCc
Confidence 34799999999999999999999999999999999999999999999999987553 345778899997 566776 589
Q ss_pred HHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Q 002434 401 IRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (922)
Q Consensus 401 i~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L 477 (922)
++||+.+.. ..+.++..+.++ +.++.+ |++.........||||||||++||||++.+|++|||||||++|
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLD-----ELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999997653 233333322211 112211 2222223344679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 478 DFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 478 D~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999998743 7899999999998765 9999999999998765
No 279
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=377.24 Aligned_cols=216 Identities=23% Similarity=0.379 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 386 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 389999999995 346999999999999999999999999999999999999999999999999998877654 3467
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcC-C---------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRD-A---------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~-~---------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
|+||+|++.+|. .|++||+.++.. . +.++..+ .+.+.+..+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998886 699999987631 0 1111111 112223322 333333445568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998874 47899999999999875 99999999999999999988753
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=375.08 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=178.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i 387 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 5 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 89999999995 347999999999999999999999999999999999999999999999999987665544 35689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC-------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+||+|++.+|. .|++||+.++.. .+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999998885 699999998642 112221111 12223332 3332334445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998874 47899999999998865 9999999999999999988764
No 281
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-38 Score=329.38 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=162.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC---CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 78999999995 3469999999999999999999999999999999999999999999999998875 3456788999
Q ss_pred EEecCCCCc-cccHHHHHhcCcC--CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 389 LVTQEPALL-SLSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
|++|++.++ ..|++||+.++.. ..+.++.++++..++ ++ .......+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~----~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-------EH----LIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC-------ch----hhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999987 5899999998641 122233333333322 11 223334579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEE
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~v 516 (922)
++|||||||++||+.+...+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998863 57899999999999999997654
No 282
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-38 Score=328.90 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=165.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD---ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC---CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 78999999995 346999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC----CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|++|++.+++ .|++||+.++.. .+++++.++++..++.++. ......||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 799999987642 2344555666666554332 23456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEE
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVM 517 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl 517 (922)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 47899999999999966 5677665
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4e-38 Score=371.34 Aligned_cols=211 Identities=23% Similarity=0.268 Sum_probs=179.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999953 45999999999999999999999999999999999999999999999998887777777788899
Q ss_pred EEecCCCC--c-------cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 389 LVTQEPAL--L-------SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 389 ~v~Q~~~l--f-------~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|++|++.+ + ..|++||+.++.. .++++.++++..++. .........||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGIT-----------ALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCH-----------hhhhCCcccCCHHHHHHHHHHH
Confidence 99998753 2 4689998865421 123444444444433 2334455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998874 47899999999998866 999999999999999999887653
No 284
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=305.63 Aligned_cols=213 Identities=23% Similarity=0.406 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC--------
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-------- 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~-------- 379 (922)
.++++|+.++|. ...+|++||++.++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..++-..
T Consensus 6 ~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 589999999995 457999999999999999999999999999999999999999999999998774322
Q ss_pred -----HHHHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHHHHH----HHHHHHHHHHhHHHhhccchhhhcCCCC
Q 002434 380 -----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGL 445 (922)
Q Consensus 380 -----~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~vge~G~ 445 (922)
...+|.+.++|+|+..|.+ .|+.||+.-+. ..+..+.. ..+.++|+.+.- ..-..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~-----------~~YP~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA-----------DAYPA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh-----------hcCcc
Confidence 3457889999999999996 99999997543 23333322 223334443333 33456
Q ss_pred CCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
.|||||+||+||||||..+|+++++|||||||||+---++.+.++++. +|+|.++|||.+.+.++ +.+|+++++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 799999999999999999999999999999999999999999998875 69999999999999998 8999999999999
Q ss_pred EecCHHHHhhc
Q 002434 524 EMGTHDELLAT 534 (922)
Q Consensus 524 ~~G~~~eL~~~ 534 (922)
|+|+|+++..+
T Consensus 232 E~G~P~qvf~n 242 (256)
T COG4598 232 EEGPPEQVFGN 242 (256)
T ss_pred ccCChHHHhcC
Confidence 99999999876
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-38 Score=371.29 Aligned_cols=212 Identities=24% Similarity=0.336 Sum_probs=177.8
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhcceE
Q 002434 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQIGL 389 (922)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~ 389 (922)
++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999995 3469999999999999999999999999999999999999999999999999876654 345778999
Q ss_pred EecCCCCcc-ccHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 390 VTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 390 v~Q~~~lf~-~ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
|+|++.+|. .|++||+.++.. .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 799999997641 12222211 122333333 4444455567789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998874 57899999999998865 9999999999999999988864
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-38 Score=369.38 Aligned_cols=211 Identities=22% Similarity=0.356 Sum_probs=175.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
-|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 389999999995 3469999999999999999999999999999999999999999999999999876543 456788
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|+||+|++.+|. .|++||+.++.. .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999999886 699999998631 12222111 122233333 3332334456789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999998874 47899999999998866 999999999999987653
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.9e-38 Score=358.05 Aligned_cols=224 Identities=25% Similarity=0.398 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC----CcEEEECCEeCCCCCHHH
Q 002434 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT----LGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~----~G~I~i~g~~i~~~~~~~ 382 (922)
-++++|++..|..... .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975532 25999999999999999999999999999999999999988 899999999999998876
Q ss_pred Hh----hcceEEecCCC-Ccc--ccHHHHHhc----CcCCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCC
Q 002434 383 LR----SQIGLVTQEPA-LLS--LSIRDNIAY----GRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (922)
Q Consensus 383 lr----~~i~~v~Q~~~-lf~--~ti~eNi~~----~~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~L 447 (922)
+| +.|+||+|+|. .+| .||.+-|.= ....+ .++..+.++.+++.+-... ..-..+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 56999999986 565 576665542 22222 2233444444444332222 3456789
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||||||+.||+||..+|++||+||||.+||+.++++|.+.|+++. .|.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999885 58899999999999877 99999999999999
Q ss_pred ecCHHHHhhcC-cHHHH
Q 002434 525 MGTHDELLATG-DLYAE 540 (922)
Q Consensus 525 ~G~~~eL~~~~-~~~~~ 540 (922)
.|+.++++++. ..|.+
T Consensus 236 ~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 236 TGPTEEILSNPQHPYTR 252 (539)
T ss_pred ecCHHHHHhccCCcccH
Confidence 99999999873 34543
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-37 Score=325.91 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999952 469999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEecCCCCc-cccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.++ ..|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-----------HLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------cCChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 589999998743 23344566666666654322 223347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
|++|||||||++||+.+...+.+.|+++ .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999876 457899999999999988 99988754
No 289
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-38 Score=302.94 Aligned_cols=207 Identities=26% Similarity=0.368 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---H
Q 002434 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---l 383 (922)
-|++++++++-+.. ....+|++|+|.|++||.+|||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37888888877543 2356999999999999999999999999999999999999999999999999999998664 3
Q ss_pred -hhcceEEecCCCCc-cccHHHHHhcCc----CCCH---HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 384 -RSQIGLVTQEPALL-SLSIRDNIAYGR----DATL---DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 384 -r~~i~~v~Q~~~lf-~~ti~eNi~~~~----~~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
.+++|+|+|..+|. +.|-.||+.... +... +.-.+.++++++. ..+..-..+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-----------~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-----------KRLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-----------cccccCccccCchHHHH
Confidence 46899999999987 589999998742 1111 1223334444443 44444456899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
+|||||+...|+||+-||||-+||.+|...|.+.+-.+. .|.|.|+|||+.....+|||++-|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999886553 47899999999999999999999999999863
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.4e-38 Score=371.69 Aligned_cols=219 Identities=25% Similarity=0.419 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCC--------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC
Q 002434 308 NIEFRNVYFSYLSR--------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~~--------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~ 379 (922)
-|+++|+++.|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999521 13569999999999999999999999999999999999985 8999999999988766
Q ss_pred HHH---HhhcceEEecCC--CCcc-ccHHHHHhcCcC-----CCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCC
Q 002434 380 LEW---LRSQIGLVTQEP--ALLS-LSIRDNIAYGRD-----ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLAL 447 (922)
Q Consensus 380 ~~~---lr~~i~~v~Q~~--~lf~-~ti~eNi~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~L 447 (922)
... +|++|+||+|++ .+|+ .|++||+.++.. .+..+..+ .+.+.+..+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHHc--CCCHHHHhcCCccC
Confidence 443 467899999998 3665 799999987521 12211111 122233332 332 2344566789
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 7899999999998865 99999999999999
Q ss_pred ecCHHHHhhc
Q 002434 525 MGTHDELLAT 534 (922)
Q Consensus 525 ~G~~~eL~~~ 534 (922)
.|+++++++.
T Consensus 507 ~~~~~~~~~~ 516 (529)
T PRK15134 507 QGDCERVFAA 516 (529)
T ss_pred EcCHHHHhcC
Confidence 9999998754
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-37 Score=326.39 Aligned_cols=195 Identities=19% Similarity=0.240 Sum_probs=162.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRN---EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecC---CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 489999999995 34699999999999999999999999999999999999999999999999988753 345679
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CC-HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---AT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+|++|++.++. .|++||+.++.. .. ++...++++..+ +..........||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVG-----------LAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcC-----------ChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 99999999887 499999987531 11 122223333222 222233445689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhc-cCEEEEEeC
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDE 519 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~D~i~vl~~ 519 (922)
++|++|||||||++||+.+.+.+.+.+++. .+++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999876 357899999999998865 999999864
No 292
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.3e-37 Score=323.43 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=160.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG---ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 57899999995 346999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC-C--CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD-A--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~-~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|++|++.+|+ .|++||+.+... . .++++.++++..++.+++ .....+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 799999987541 1 123455666655554433 233467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhccCEEEE
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~D~i~v 516 (922)
|+++||||||++||+.++..+.+.|+++ .+++|+|++||+...+. |++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 45789999999985443 355543
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-37 Score=368.41 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC--CCcEEEECCEeCCCCCHHH-Hhh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEW-LRS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~i~~~~~~~-lr~ 385 (922)
|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999995 34699999999999999999999999999999999999987 7999999999998877654 456
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcCC-------CHHHHHHHHHHHHHHHhHHHhhccchhhh-cCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-ge~G~~LSGGqkQRia 456 (922)
+|+||+|++.+|. .|++||+.++... +.++..+ .+.+.++.+ |++... ......||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 7999999998886 6999999886421 1122111 122233332 222111 1234679999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998874 47899999999999876 999999999999999987764
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-38 Score=376.82 Aligned_cols=219 Identities=21% Similarity=0.351 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC----------
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK---------- 376 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~---------- 376 (922)
-|+++|++++|+... +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 499999999996321 347999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hcceEEecCC--CCcc-ccHHHHHhcCc----CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhc
Q 002434 377 NLKLE---WLR-SQIGLVTQEP--ALLS-LSIRDNIAYGR----DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVG 441 (922)
Q Consensus 377 ~~~~~---~lr-~~i~~v~Q~~--~lf~-~ti~eNi~~~~----~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vg 441 (922)
+.+.. .+| ++||||+|+| .+++ .||+|||.++. ..+..+ +.++++..++ ++ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PE-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CC-hhhHHh
Confidence 22322 233 4799999998 5775 69999998752 122222 2222322222 11 022345
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCcchhhc-cCEEEEEe
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5677899999999999999999999999999999999999999999999875 3 7899999999998865 99999999
Q ss_pred CCeEEEecCHHHHhhc
Q 002434 519 EGRLFEMGTHDELLAT 534 (922)
Q Consensus 519 ~G~i~~~G~~~eL~~~ 534 (922)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998754
No 295
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-37 Score=369.52 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=178.5
Q ss_pred cEEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCCCHH
Q 002434 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~~~~ 381 (922)
-|+++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 124799999999999999999999999999999999999997 799999999999877654
Q ss_pred H---Hh-hcceEEecCCC--Ccc-ccHHHHHhcCc----CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 382 W---LR-SQIGLVTQEPA--LLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 382 ~---lr-~~i~~v~Q~~~--lf~-~ti~eNi~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
. +| ++|+||+|++. +++ .|+++|+.+.. ..+. +++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 3 33 57999999985 444 68999987421 1222 233334444333211 0122445678
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998874 37899999999998865 9999999999999
Q ss_pred EecCHHHHhhc
Q 002434 524 EMGTHDELLAT 534 (922)
Q Consensus 524 ~~G~~~eL~~~ 534 (922)
+.|+++++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=331.92 Aligned_cols=222 Identities=27% Similarity=0.423 Sum_probs=189.0
Q ss_pred cEEEEeEEEEeCCCCC--------CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC
Q 002434 308 NIEFRNVYFSYLSRPE--------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~--------~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~ 379 (922)
-++.+||...|+-++. ..++++|||++++||+++|||+||||||||-..|+|+.++. |+|.++|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 4899999999975421 35799999999999999999999999999999999999986 99999999999998
Q ss_pred HHH---HhhcceEEecCCC--Ccc-ccHHHHHhcCc-----CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCC
Q 002434 380 LEW---LRSQIGLVTQEPA--LLS-LSIRDNIAYGR-----DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444 (922)
Q Consensus 380 ~~~---lr~~i~~v~Q~~~--lf~-~ti~eNi~~~~-----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G 444 (922)
.++ +|+++-+|+|||+ |-+ .||.+-|.-|- ..+ ++++.+|++.+|++.... ..-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcCC
Confidence 776 5789999999998 333 89988887663 122 355677777777754432 2334
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
..+|||||||||||||++-+|++++|||||||||...+.+|.+.++++. .+-+-++|+|+|..++. ||+|+||++|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 5799999999999999999999999999999999999999999998874 46789999999999988 99999999999
Q ss_pred EEEecCHHHHhhcC-cHHHH
Q 002434 522 LFEMGTHDELLATG-DLYAE 540 (922)
Q Consensus 522 i~~~G~~~eL~~~~-~~~~~ 540 (922)
|||+|+.++++++. ..|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 99999999999873 45654
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.3e-35 Score=380.58 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|++ .++++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1937 ~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 5999999999963 23579999999999999999999999999999999999999999999999999865 455678899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
||+||++.++. .|++||+.+.. ..+.+++.+.++ +.++.+ |++.........||||||||++|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~-----~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVAN-----WSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 79999998642 233333322211 122221 33333344556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|+||||||||+|||+.+++.+.+.|+++. +|+|+|++||+++.++. ||||++|++|++++.|+.++|.++
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999998864 58999999999999876 999999999999999999998754
No 298
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=330.92 Aligned_cols=215 Identities=20% Similarity=0.303 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCC-----------------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 002434 308 NIEFRNVYFSYLSR-----------------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (922)
Q Consensus 308 ~i~~~~v~f~y~~~-----------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i 370 (922)
.|+++||+..|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877542 2346899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCC
Q 002434 371 DGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (922)
Q Consensus 371 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~ 446 (922)
+|. +++++|++.+++ .|++||+.++. ..+.++..+.+.. .+.. .|++..+......
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK-----IIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHH--cCCchhhcCCccc
Confidence 993 567888887764 79999998642 2344443332211 1111 1334445556788
Q ss_pred CCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 447 LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
||||||||++||||++++|++|||||||++||+.+...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 47899999999998866 99999999999999
Q ss_pred ecCHHHHhhcCcHHHHHH
Q 002434 525 MGTHDELLATGDLYAELL 542 (922)
Q Consensus 525 ~G~~~eL~~~~~~~~~l~ 542 (922)
.|+++++....+.|.+..
T Consensus 224 ~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 224 YGELDDVLPKYEAFLNDF 241 (264)
T ss_pred eCCHHHHHHHhHHHHHHH
Confidence 999999987654444433
No 299
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=325.96 Aligned_cols=193 Identities=27% Similarity=0.480 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCCCC------CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH
Q 002434 309 IEFRNVYFSYLSRPE------IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~~------~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~ 382 (922)
++++|+++.|+.... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 789999999975321 46899999999999999999999999999999999999999999999999987765
Q ss_pred HhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHH-hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 383 LRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
.....+++.+.++.+++.+ +..+.| .+|||||+||++|||||
T Consensus 82 --------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARAL 124 (268)
T COG4608 82 --------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARAL 124 (268)
T ss_pred --------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHH
Confidence 1122456778888877654 344444 57999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC-cH
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG-DL 537 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~-~~ 537 (922)
.-+|+++++|||||+||...+++|.+.+.++. .+-|.++|||+++.++. ||||.||..|+|+|.|+.+++..+. ..
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 99999999999999999999999999998775 37899999999999998 9999999999999999999998763 44
Q ss_pred HHHH
Q 002434 538 YAEL 541 (922)
Q Consensus 538 ~~~l 541 (922)
|.+.
T Consensus 205 YTk~ 208 (268)
T COG4608 205 YTKA 208 (268)
T ss_pred HHHH
Confidence 5543
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=366.69 Aligned_cols=218 Identities=23% Similarity=0.335 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-CCCcEEEECCEeCCCCCH-HHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-PTLGEVLLDGENIKNLKL-EWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-~~~G~I~i~g~~i~~~~~-~~lr~ 385 (922)
-|+++|+++.|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223569999999999999999999999999999999999999 599999999999875543 34577
Q ss_pred cceEEecCC---CCc-cccHHHHHhcCc--CC------CHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHH
Q 002434 386 QIGLVTQEP---ALL-SLSIRDNIAYGR--DA------TLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQK 452 (922)
Q Consensus 386 ~i~~v~Q~~---~lf-~~ti~eNi~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqk 452 (922)
.|+||+|++ .+| ..|+.||+.++. .. +.++ ....+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 366 479999998753 11 1111 112233444444 3322 23455678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998774 58899999999998866 99999999999999998887
Q ss_pred Hh
Q 002434 531 LL 532 (922)
Q Consensus 531 L~ 532 (922)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-37 Score=367.67 Aligned_cols=219 Identities=22% Similarity=0.407 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCC--CCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC-CEe---CCCCC--
Q 002434 308 NIEFRNVYFSYLS--RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD-GEN---IKNLK-- 379 (922)
Q Consensus 308 ~i~~~~v~f~y~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~-g~~---i~~~~-- 379 (922)
-|+++|++++|++ +++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999953 123469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhcceEEecCCCCcc-ccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhccchh-----hhcCCCCCCCHH
Q 002434 380 -LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYET-----QVGRAGLALTEE 450 (922)
Q Consensus 380 -~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-----~vge~G~~LSGG 450 (922)
...+|++|+||+|++.+|+ .|++||+.++. ....++.. ..+.+.++.+ |++. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998886 79999998632 11111111 1112223322 2221 234556789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998874 37899999999998866 99999999999999999
Q ss_pred HHHHhh
Q 002434 528 HDELLA 533 (922)
Q Consensus 528 ~~eL~~ 533 (922)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 988754
No 302
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-37 Score=327.56 Aligned_cols=202 Identities=24% Similarity=0.315 Sum_probs=160.5
Q ss_pred EEEEeEEEEeCCC---C-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC--CE--eCCCCCH
Q 002434 309 IEFRNVYFSYLSR---P-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD--GE--NIKNLKL 380 (922)
Q Consensus 309 i~~~~v~f~y~~~---~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~--g~--~i~~~~~ 380 (922)
|+++|++++|+.. + ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999999999999999999999998 42 6665555
Q ss_pred HH---H-hhcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHH
Q 002434 381 EW---L-RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQ 451 (922)
Q Consensus 381 ~~---l-r~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGq 451 (922)
.. + ++.++|++|++.++. .|++|||.+.. ....++..+. +.+.++.+ |++. .....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARAR-----ARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999999885 79999998632 2222222111 11222222 2221 1234567899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEE
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVM 517 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl 517 (922)
|||++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998875 4789999999999886 59999876
No 303
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.2e-37 Score=375.32 Aligned_cols=216 Identities=24% Similarity=0.364 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCC------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCC
Q 002434 308 NIEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNL 378 (922)
Q Consensus 308 ~i~~~~v~f~y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~ 378 (922)
+++|.++. +++.. .++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 35555555 44322 2567999999999999999999999999999999999999885 799999999875
Q ss_pred CHHHHhhcceEEecCCCCcc-ccHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHH--hhccchhhhcCC--CCCC
Q 002434 379 KLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRA--GLAL 447 (922)
Q Consensus 379 ~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~vge~--G~~L 447 (922)
...+|+.++||+|++++++ .||+|||.|+.. .+.++ +...+++.++. |++..||.+|+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 3568889999999999995 799999998641 12222 12223344444 456789999984 4899
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcc-h-hhccCEEEEEeCCeEEE
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLS-L-IRNADYIAVMDEGRLFE 524 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~-~~~~D~i~vl~~G~i~~ 524 (922)
|||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. +|+|+|+++|+++ . .+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 9999999999999999999999999999999999999999999875 4899999999986 3 56799999999999999
Q ss_pred ecCHHHHh
Q 002434 525 MGTHDELL 532 (922)
Q Consensus 525 ~G~~~eL~ 532 (922)
+|+++++.
T Consensus 248 ~G~~~~~~ 255 (617)
T TIGR00955 248 LGSPDQAV 255 (617)
T ss_pred ECCHHHHH
Confidence 99999986
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-37 Score=374.25 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=171.3
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC--CcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-c
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT--LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-L 399 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~--~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 399 (922)
++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||+++. ...+++++||+|++.+++ .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 899999999874 235667999999999995 7
Q ss_pred cHHHHHhcCc------CCCHHHHHHHHHHHHHHHhHH--HhhccchhhhcCC-CCCCCHHHHHHHHHHHhhccCCCEEEE
Q 002434 400 SIRDNIAYGR------DATLDQIEEAAKIAHAHTFIS--SLEKGYETQVGRA-GLALTEEQKIKLSIARAVLLNPSILLL 470 (922)
Q Consensus 400 ti~eNi~~~~------~~~~~~~~~~~~~~~l~~~i~--~l~~g~~t~vge~-G~~LSGGqkQRiaiARAl~~~p~iliL 470 (922)
|++||+.++. ..++++..+.+ ++.++ .|++..||.+|++ ...||||||||++|||||+++|+||+|
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 9999998853 22333322211 22333 2455568888864 778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch-h-hccCEEEEEeCCeEEEecCHHHHhh
Q 002434 471 DEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL-I-RNADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 471 DEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
||||++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|+|++|++|++++.|+++++..
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999998875 58999999999984 4 5699999999999999999999864
No 305
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-37 Score=347.00 Aligned_cols=209 Identities=31% Similarity=0.470 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 386 (922)
-++++|++++|+ ..++|+|+||++.+||++||+|.||||||||+|.|+|.|+|++|+|.+||+++.-.++.+ ....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 388999999995 468999999999999999999999999999999999999999999999999998777655 5567
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCC-------HHHHHHHHHHHHHHHhHHHhh--ccchhhhcCCCCCCCHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDAT-------LDQIEEAAKIAHAHTFISSLE--KGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~-------~~~~~~~~~~~~l~~~i~~l~--~g~~t~vge~G~~LSGGqkQRia 456 (922)
|+.|.||..|++ .||.|||.+|+... ..++.+.++. .+..+- ...++.|+ +||+||||.++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 999999999995 89999999998432 2444443332 222221 22556665 69999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
||||+..+++|||||||||+|+....+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..++.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999886 68999999999999876 999999999999987773
No 306
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=306.48 Aligned_cols=212 Identities=25% Similarity=0.433 Sum_probs=187.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+++|. ++.+|+|+|++|++|++++|+||||+|||||+.++.|+.++++|+|.+||.++.+.+.+.|.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78999999994 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcc-ccHHHHHhcCc-CCCH--------HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR-DATL--------DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~-~~~~--------~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
++-|+.++-. -||||-+.||+ +++. .-+.+|++-.+|.+ |.+.| -..||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dry-------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDRY-------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHHh-------HHhcccchhhhhhhh
Confidence 9999999874 89999999998 5542 23445555444432 22222 235999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
..+.+|.+.++||||..+||-.....+++.++++.. +||+|+|-|+...+.. +|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999988753 8999999999999876 999999999999999999999875
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.6e-37 Score=365.73 Aligned_cols=215 Identities=24% Similarity=0.392 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCCcEEEEC---------------
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLD--------------- 371 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~G~I~i~--------------- 371 (922)
|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 57899999995 346999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhhcceEEecC-CCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHh
Q 002434 372 --------GENIK-------NLK---LEWLRSQIGLVTQE-PALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTF 428 (922)
Q Consensus 372 --------g~~i~-------~~~---~~~lr~~i~~v~Q~-~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~ 428 (922)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++. ..+.++..+ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 33221 111 13457789999998 57775 69999998752 222222211 11122
Q ss_pred HHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcc
Q 002434 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLS 506 (922)
Q Consensus 429 i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~ 506 (922)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 2222 33333445567899999999999999999999999999999999999999999998874 3789999999999
Q ss_pred hhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 507 LIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 507 ~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
.+.. ||+|++|++|++++.|+++++..
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9865 99999999999999999988754
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.1e-37 Score=326.50 Aligned_cols=186 Identities=24% Similarity=0.397 Sum_probs=156.6
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCC---ccccHHHHHhcC
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL---LSLSIRDNIAYG 408 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l---f~~ti~eNi~~~ 408 (922)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999976 458999999875
Q ss_pred cC--------C---CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Q 002434 409 RD--------A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (922)
Q Consensus 409 ~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L 477 (922)
.. . .++++.++++..++.++ .......||||||||++||||++++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTEL-----------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 1 11234445555444332 23345579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 478 DFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 478 D~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|+.++..+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998875 47899999999998765 9999999 8999999999998664
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7e-37 Score=370.43 Aligned_cols=218 Identities=28% Similarity=0.432 Sum_probs=187.6
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH---
Q 002434 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL--- 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l--- 383 (922)
-|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999996321 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hhcceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 384 -RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 384 -r~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
|+.++|++|++.+|+ .|+.||+.++. ..+.++ ....+.+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 69999998743 112111 112233444444 566667777789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHh
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
||++++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999999889999999999999999999875
No 310
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=347.32 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|++|.|+.+..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48999999999754335799999999999999999999999999999999999999999999999751
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHHHH----HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
++.+.+.+++ .|++||+.+.. ..+.++.. ++++.+++ +.........||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL-----------~~~ld~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADI-----------GKFIYQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhCCcccCCHHHHHHHHHHH
Confidence 2333444443 69999998743 23333332 23333333 33334456789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcCcH
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDL 537 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~~~ 537 (922)
||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998874 47899999999998866 999999999999999999999876444
Q ss_pred HHHHH
Q 002434 538 YAELL 542 (922)
Q Consensus 538 ~~~l~ 542 (922)
|.+.+
T Consensus 237 ~~~~~ 241 (549)
T PRK13545 237 FLKKY 241 (549)
T ss_pred HHHHH
Confidence 44433
No 311
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.4e-37 Score=318.18 Aligned_cols=174 Identities=30% Similarity=0.472 Sum_probs=144.9
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC--CCHHHHhhcceEEecCC--CCcc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQIGLVTQEP--ALLS 398 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~i~~v~Q~~--~lf~ 398 (922)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|++ .+|+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3569999999999999999999999999999999999999999999999999852 23446778899999998 4778
Q ss_pred ccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEe
Q 002434 399 LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (922)
Q Consensus 399 ~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLD 471 (922)
.|++||+.++. ..+.++ +.++++..++. ........+||||||||++||||++++|++||||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-----------GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999998753 233322 33333333333 2333445689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch
Q 002434 472 EVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL 507 (922)
Q Consensus 472 Epts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~ 507 (922)
|||++||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999998874 47899999999864
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.8e-37 Score=394.02 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
..|+++|+++.|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 35999999999953 24579999999999999999999999999999999999999999999999999975 45678889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+||+||++.+|+ .|++|||.++. ..+.++.++ .+++.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999996 79999998753 222222211 112222222 4444455667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
.+|++||||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998889999999999999875 999999999999999999999765
No 313
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.7e-36 Score=321.02 Aligned_cols=196 Identities=26% Similarity=0.336 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
+.++|++..|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 67788888884 35799999999999999999999999999999999999999999999999876421
Q ss_pred EEecCCCC-ccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 389 LVTQEPAL-LSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 389 ~v~Q~~~l-f~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
.+...+ .+.|++||+.++. ..+.++..+.++ +.++.+ |++........+||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKID-----EIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 3579999998753 123322222111 111111 222223344467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998864 46899999999998865 9999999999998865
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-36 Score=315.82 Aligned_cols=188 Identities=18% Similarity=0.315 Sum_probs=157.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ ++.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~---~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIE---QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEEC---CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 78999999995 23445 599999999999999999999999999999999999999999999886543 34699
Q ss_pred EEecCCCC-ccccHHHHHhcCcC--CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 389 LVTQEPAL-LSLSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 389 ~v~Q~~~l-f~~ti~eNi~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
|++|++.+ ++.|++||+.++.. ..++++.++++..++.+ .....+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-----------LLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-----------hhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999865 57999999987542 12344555555544433 334556789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhccCEEE
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
++|||||||++||+.++..+.+.|++. .+++|+|++||+++.++.||.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999754 46899999999999999999774
No 315
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-37 Score=292.45 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE--eCCCCC----HH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE--NIKNLK----LE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~--~i~~~~----~~ 381 (922)
.|.++|++|.|. ...+|-||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|. |..+.+ ..
T Consensus 2 sirv~~in~~yg---~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYG---AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccc---cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 489999999995 347999999999999999999999999999999999999999999999774 444433 45
Q ss_pred HHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.+|+.+|.|+|+-+|.+ .||-||+.-.. ..+++ +..+.++...+.++-+++| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 68999999999999996 89999997542 23333 3344555566666666665 36999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
||+||||||+.+|++|++||||++|||+-..++.+.|+++.. |.|-++|||..+..++ |.+++.|++|+|+|.|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999999999999999864 8899999999999987 99999999999999999876
Q ss_pred Hh
Q 002434 531 LL 532 (922)
Q Consensus 531 L~ 532 (922)
.-
T Consensus 228 ft 229 (242)
T COG4161 228 FT 229 (242)
T ss_pred cc
Confidence 43
No 316
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=358.54 Aligned_cols=211 Identities=22% Similarity=0.307 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 38999999999999999999999999999999999999999999999999876544 456778
Q ss_pred ceEEecCC---CCcc-ccHHHHHhcCcCC------------CHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCH
Q 002434 387 IGLVTQEP---ALLS-LSIRDNIAYGRDA------------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTE 449 (922)
Q Consensus 387 i~~v~Q~~---~lf~-~ti~eNi~~~~~~------------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSG 449 (922)
|+||+|++ .+|+ .|++||+.++... ...+ ....+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 5775 6999999876321 1111 111223334433 332 223445567999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
|||||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 57899999999988765 99999999999999887
Q ss_pred HHH
Q 002434 528 HDE 530 (922)
Q Consensus 528 ~~e 530 (922)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 633
No 317
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-36 Score=358.09 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEEECCEeCCCCCH-HHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKNLKL-EWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~i~g~~i~~~~~-~~lr~ 385 (922)
-|+++|++++|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432234699999999999999999999999999999999999996 89999999999865443 56788
Q ss_pred cceEEecCC---CCcc-ccHHHHHhcCcC--CCH-HHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEP---ALLS-LSIRDNIAYGRD--ATL-DQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~---~lf~-~ti~eNi~~~~~--~~~-~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRiai 457 (922)
+|+||+|++ .+|+ .|++||+.++.. ... ..+........+.+.++.+ |+.. ........||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHH
Confidence 999999996 4665 799999988531 100 0000000111223334433 2321 2334456899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..++.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999998874 57899999999998865 99999999999998776543
No 318
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=296.56 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
+..++++.+|+..+ .++|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|.+||..|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56789999997543 569999999999999999999999999999999999999999999999998876554 358
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---CCCHHHHH----HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+|+|++.|++ .|+.||+.||- ...+.+-. +.+..+++.++ --..-.+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-----------~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-----------EHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-----------cccceEeecchHHHHHHHHHH
Confidence 9999999998 89999999985 34433322 22223333222 123457899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe--CCeEEEecCH
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD--EGRLFEMGTH 528 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~--~G~i~~~G~~ 528 (922)
|.-+|+.|+||||++|||+-+++++++.+-++. .++.+++|||++++.-- |++++||+ .|+|++.=++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999986653 48999999999988655 99999997 5789886544
No 319
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=313.20 Aligned_cols=196 Identities=26% Similarity=0.440 Sum_probs=172.5
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----CCHHHHhhcceEEecCCCCcc-ccHH
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEWLRSQIGLVTQEPALLS-LSIR 402 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~----~~~~~lr~~i~~v~Q~~~lf~-~ti~ 402 (922)
=++||+.+.-.++||-|+||||||||+|+|.|+..|++|.|.+||.-+.+ +...--+++||||+||..||+ .||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36888888878999999999999999999999999999999999976643 344455789999999999996 9999
Q ss_pred HHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH
Q 002434 403 DNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 403 eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~ 481 (922)
.|++||. ..+.+++.+++...++...+.+.| ..||||||||+||+|||+.+|++|+||||.|+||-..
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999998 445667888888777777666666 4699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 482 ERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 482 ~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+++++-.|+++.+ +.-++.|||.++++.+ ||+|++|++||+.+.|..+|....
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999988764 4568999999988755 999999999999999999998765
No 320
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=354.23 Aligned_cols=209 Identities=22% Similarity=0.340 Sum_probs=173.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
-|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999974 36999999999999999999999999999999999999999999999999987665 346778
Q ss_pred ceEEecCC---CCc-cccHHHHHhcCcC---------CCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHH
Q 002434 387 IGLVTQEP---ALL-SLSIRDNIAYGRD---------ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (922)
Q Consensus 387 i~~v~Q~~---~lf-~~ti~eNi~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqk 452 (922)
|+||+|++ .+| ..|++||+.++.. .+.++. ...+.+.+..+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 4799999987521 111111 11223344433 332 234556678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999998876
Q ss_pred H
Q 002434 531 L 531 (922)
Q Consensus 531 L 531 (922)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-36 Score=354.78 Aligned_cols=208 Identities=23% Similarity=0.389 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 78999999995 347999999999999999999999999999999999999999999999972 3699
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC-C----------------CHH---HHHHHH----------HHHHHHHhHHHhhccch
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD-A----------------TLD---QIEEAA----------KIAHAHTFISSLEKGYE 437 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~-~----------------~~~---~~~~~~----------~~~~l~~~i~~l~~g~~ 437 (922)
|++|++.+|. .|++||+.++.. . ..+ .+.+.. ....+.+.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998875 799999987531 0 000 000000 011222333333 343
Q ss_pred hhh-cCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEE
Q 002434 438 TQV-GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIA 515 (922)
Q Consensus 438 t~v-ge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~ 515 (922)
... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 222 234678999999999999999999999999999999999999999999864 47899999999998866 99999
Q ss_pred EEeCCeE-EEecCHHHHhhc
Q 002434 516 VMDEGRL-FEMGTHDELLAT 534 (922)
Q Consensus 516 vl~~G~i-~~~G~~~eL~~~ 534 (922)
+|++|++ ++.|++++.++.
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTA 243 (530)
T ss_pred EEeCCEEEEecCCHHHHHHH
Confidence 9999999 489999988653
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-35 Score=355.21 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999952 34799999999999999999999999999999999999999999999975 2479
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC------------------CCH---------HHHHHHHHHHHHH-------HhHHHh
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD------------------ATL---------DQIEEAAKIAHAH-------TFISSL 432 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~------------------~~~---------~~~~~~~~~~~l~-------~~i~~l 432 (922)
+||+|+|.+++ .|++|||.++.. ..+ +++.++++.++.+ +.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 699999987521 001 1233333333322 122222
Q ss_pred hccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-c
Q 002434 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (922)
Q Consensus 433 ~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 511 (922)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 222 124456789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCCeEE-EecCHHHHhhc
Q 002434 512 DYIAVMDEGRLF-EMGTHDELLAT 534 (922)
Q Consensus 512 D~i~vl~~G~i~-~~G~~~eL~~~ 534 (922)
|+|++|++|+++ ..|++++..+.
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHH
Confidence 999999999976 78999987653
No 323
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.2e-36 Score=333.44 Aligned_cols=180 Identities=28% Similarity=0.508 Sum_probs=153.3
Q ss_pred EeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHHhcCc---CCCHH---
Q 002434 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLD--- 414 (922)
Q Consensus 342 ivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~--- 414 (922)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++|+||+|++.+|+ .|++||+.++. ..+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 3678999999999996 69999999864 22222
Q ss_pred -HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 002434 415 -QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493 (922)
Q Consensus 415 -~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 493 (922)
++.++++..+ ++........+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++.
T Consensus 79 ~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQ-----------LEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcC-----------CcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 2333333333 3333445567899999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 494 L--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 494 ~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 7899999999998765 999999999999999999999765
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=353.67 Aligned_cols=211 Identities=24% Similarity=0.310 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999732 48999999999999999999999999999999999999999999999999875543 445778
Q ss_pred ceEEecCCC---Ccc-ccHHHHHhcCcC-C--------CHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHH
Q 002434 387 IGLVTQEPA---LLS-LSIRDNIAYGRD-A--------TLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (922)
Q Consensus 387 i~~v~Q~~~---lf~-~ti~eNi~~~~~-~--------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqk 452 (922)
|+|++|++. +|. .|+.||+.++.. . ...+- ...+.+.+..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 664 899999987531 0 11111 11223344443 332 223445568999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+.. ||++++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999999887
Q ss_pred Hh
Q 002434 531 LL 532 (922)
Q Consensus 531 L~ 532 (922)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 325
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=327.91 Aligned_cols=213 Identities=23% Similarity=0.380 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
.++++++++.|| ...+++||||+|++||+.||+|+||+|||||+++|.|+|+|++|+|++||++++--++ +..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999996 4679999999999999999999999999999999999999999999999999987665 457788
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCCHH---HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDATLD---QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~---~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
||.|.|++.|++ .|+.|||.+|.+...- ...++-+ .+.+..+++ |++-...+.-..||-|||||+-|-+|||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~--~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA--RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH--HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHh
Confidence 999999999996 8999999999743210 1111111 111222221 4444444556679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
++|++||||||||-|-|.....+.+.++++. .|+|+|+|||++.+++. |||+-||.+||++..-.
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999998875 69999999999999877 99999999999875443
No 326
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.8e-36 Score=384.40 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC---CCCcEEEECCEeCCCCCHHHH
Q 002434 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 308 ~i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~---~~~G~I~i~g~~i~~~~~~~l 383 (922)
.++++||+++|+.+ .++++|+|||+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37999999999632 23579999999999999999999999999999999999998 78899999999985 257
Q ss_pred hhcceEEecCCCCc-cccHHHHHhcCc------CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 384 RSQIGLVTQEPALL-SLSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 384 r~~i~~v~Q~~~lf-~~ti~eNi~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
|+.++||+|++.++ ..||+||+.++. ..++++ ++++++..+ |.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 88999999997654 689999999852 223333 233333333 344578999999999999999
Q ss_pred HHHHHHHhhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchh--hccCEEEEEeCC-eEEEecC
Q 002434 453 IKLSIARAVLLNPS-ILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLI--RNADYIAVMDEG-RLFEMGT 527 (922)
Q Consensus 453 QRiaiARAl~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~--~~~D~i~vl~~G-~i~~~G~ 527 (922)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++ .+|+|+|+++|+++.. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999863 679999999997 9999999
Q ss_pred HHHH
Q 002434 528 HDEL 531 (922)
Q Consensus 528 ~~eL 531 (922)
..+.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 7553
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-35 Score=351.74 Aligned_cols=209 Identities=22% Similarity=0.298 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999952 357999999999999999999999999999999999999999999999751 379
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc-CC----------------CH----------HHHHHHHHHH-------HHHHhHHHh
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR-DA----------------TL----------DQIEEAAKIA-------HAHTFISSL 432 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~-~~----------------~~----------~~~~~~~~~~-------~l~~~i~~l 432 (922)
|||+|+|.+++ .|++||+.++. .. .. .++.+.++.+ .+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999986 69999998752 10 00 0111111111 112222222
Q ss_pred hccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-c
Q 002434 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (922)
Q Consensus 433 ~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 511 (922)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. +|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 232 1344567899999999999999999999999999999999999999999998763 599999999999876 9
Q ss_pred CEEEEEeCCeEE-EecCHHHHhhc
Q 002434 512 DYIAVMDEGRLF-EMGTHDELLAT 534 (922)
Q Consensus 512 D~i~vl~~G~i~-~~G~~~eL~~~ 534 (922)
|+|++|++|+++ ..|++++..+.
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHH
Confidence 999999999986 78999987643
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=351.67 Aligned_cols=202 Identities=19% Similarity=0.317 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 599999999995 346999999999999999999999999999999999999999999999983 479
Q ss_pred eEEecCCC--Ccc-ccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPA--LLS-LSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~--lf~-~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+||+|++. +++ .|++||+.+.. ...++++.++++..++. .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 443 79999997532 22234445555444331 11234556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEE-EecCHHHHhhcC
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDELLATG 535 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~-~~G~~~eL~~~~ 535 (922)
.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++++...
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 999999999999999999999999999876 4599999999999876 9999999999998 889998876543
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.2e-35 Score=309.99 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=154.2
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE-ECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-LDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRD 403 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~e 403 (922)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+ .|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777532 1345677886 59999
Q ss_pred HHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH
Q 002434 404 NIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 404 Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~ 480 (922)
|+.+.. ..+.++..+.+. ....++..+++.+ ..||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998753 233444332221 1223455555555 459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcCc
Q 002434 481 AERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 481 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~~ 536 (922)
+++.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..+..+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 99999998865556789999999999986 599999999999999999988864433
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.5e-35 Score=290.28 Aligned_cols=143 Identities=33% Similarity=0.530 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999953 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
|++| |||||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++||
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 5799999999999866 89999999986
No 331
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=311.48 Aligned_cols=416 Identities=15% Similarity=0.117 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFV-NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAA 170 (922)
Q Consensus 92 srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~-~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (922)
.|+++|++..-..+.+....++...+.++....-++- ..|+-...++.-..+-.++...+.+.+.+...++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5899999877776664444444333332222222221 222211111111111112222222223334444555555555
Q ss_pred HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcc
Q 002434 171 SIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT----HNKAH 246 (922)
Q Consensus 171 ~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~----~g~lt 246 (922)
-.-.+...|.+.|..|+.+..+.....+.+++........-...-+...+..++.++..++...+-+..+. .+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 55556677888899999998888776666665555444433333333333333333332222111111112 23455
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C----C------CC--C------CCC-C
Q 002434 247 GGEIVTALF----AVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS---S----S------TT--N------YDG-N 300 (922)
Q Consensus 247 ~g~l~~~~~----~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~---~----~------~~--~------~~~-~ 300 (922)
..++...+. +++-....+..+......+.+-..-..||.++.+.- . + .. . ..| .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 555544321 222222334444444444444445567776665321 0 0 00 0 000 0
Q ss_pred CCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH
Q 002434 301 TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 301 ~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~ 380 (922)
...+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|.||||||||+|++.|.|+++..+|++.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 011223569999999998865 445778899999999999999999999999999999999999999975332110
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc--------CCCHHHHHHHHHHHHHHHhHHHhhccchhhhc-CCCCCCCHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQVG-RAGLALTEEQ 451 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg-e~G~~LSGGq 451 (922)
+.+-||||.|+.-.||+||-+.|.. .++++++.+.++.+++.+.++. -+|+|+++- +-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 3588999999999999999999861 4789999999999999877665 478887754 5678899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
+||+|.||-+|++|++-||||+|||+|.+.|..+.+.+++. |.|.|-|.||-+.-+.-|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999888764 8899999999999999999999986
No 332
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.2e-35 Score=315.01 Aligned_cols=192 Identities=20% Similarity=0.270 Sum_probs=156.3
Q ss_pred EEeCCCCCCCcccceeEEec-----CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEE
Q 002434 316 FSYLSRPEIPILSGFYLTVP-----AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (922)
Q Consensus 316 f~y~~~~~~~vL~~isl~i~-----~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 390 (922)
|+|++ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 56763 3458899999987 69999999999999999999999999999999999984 69999
Q ss_pred ecCCCC-ccccHHHHHhcCcC-C-C-HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 391 TQEPAL-LSLSIRDNIAYGRD-A-T-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 391 ~Q~~~l-f~~ti~eNi~~~~~-~-~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
+|++.. ++.|++||+.+... . . .+...++++.. |++.........||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL-----------QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 57999999976431 1 1 12223333333 34444455667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEE--EecCHHHHh
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF--EMGTHDELL 532 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~--~~G~~~eL~ 532 (922)
++||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998875 37899999999999875 9999999775444 456666654
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-35 Score=318.56 Aligned_cols=200 Identities=18% Similarity=0.245 Sum_probs=159.4
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE-----------ECCEeCCCCCH
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKL 380 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~-----------i~g~~i~~~~~ 380 (922)
.||+|+|+. ..++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899952 236999999 4999999999999999999999999999999999996 88988876643
Q ss_pred HHHhh--cceEEecCCCCccccHHHHHhcCc-CC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 381 EWLRS--QIGLVTQEPALLSLSIRDNIAYGR-DA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 381 ~~lr~--~i~~v~Q~~~lf~~ti~eNi~~~~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
...+. .++|++|++.+++.++.+|+...- .. .++++.++++.. |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL-----------ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHH
Confidence 33333 378999988877666666665421 11 122333333333 4445556677899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEec
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G 526 (922)
||||++++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999998875 47999999999999885 9999999 46676544
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4e-35 Score=346.91 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-Hhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~ 386 (922)
-|+++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998776654 4568
Q ss_pred ceEEecCC---CCcc-ccHHHHHhcCc----C--CCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHH
Q 002434 387 IGLVTQEP---ALLS-LSIRDNIAYGR----D--ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 387 i~~v~Q~~---~lf~-~ti~eNi~~~~----~--~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRi 455 (922)
|+||||++ .+|. .|+.+|+.... . ....+. ...+.+.+..+ |++ .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3665 69999986421 1 011111 11223344443 343 234556678999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998874 47899999999999876 99999999999999999887653
No 335
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.4e-35 Score=344.76 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEEECCEeCCC-CCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKN-LKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~i~g~~i~~-~~~~~lr~ 385 (922)
-|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|+
T Consensus 260 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC---CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 499999999995 24699999999999999999999999999999999998876 69999999987632 23345678
Q ss_pred cceEEecCCCCcc---ccHHHHHhcCc-C-------CCH---HHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHH
Q 002434 386 QIGLVTQEPALLS---LSIRDNIAYGR-D-------ATL---DQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEE 450 (922)
Q Consensus 386 ~i~~v~Q~~~lf~---~ti~eNi~~~~-~-------~~~---~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGG 450 (922)
+|+|++|++.++. .++++++.++. . ... +++.++++.. |++. ........||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL-----------GIDKRTADAPFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCchhhccCchhhCCHH
Confidence 8999999987642 47777765431 0 111 1223333333 3333 334455789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CC-eEEEEecCcchhhc--cCEEEEEeCCeEEEe
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GR-STIIIARRLSLIRN--ADYIAVMDEGRLFEM 525 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~-t~i~itH~l~~~~~--~D~i~vl~~G~i~~~ 525 (922)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++ |+|+|||+++.+.. ||++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999999988753 44 69999999999864 899999999999874
No 336
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-35 Score=296.08 Aligned_cols=213 Identities=22% Similarity=0.399 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.+++++|+++|. +..+++|+||++++|++.+++||||+||||.+++|+|+++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 378999999994 5689999999999999999999999999999999999999999999999988864 356689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
||+|.+--|+. .|+.|-|.|.. ....+++.+ .+..|++++.-. -.-..+-..||-|.+|+|.+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999996 89999999853 455555543 234566665321 11234557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|+|+.|||++.++. ||+++.|++|+.|-+|+.++..+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998875 59999999999999977 999999999999999999988654
No 337
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=342.33 Aligned_cols=211 Identities=21% Similarity=0.299 Sum_probs=169.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH-HHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE-WLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~ 386 (922)
.|+++|+++.| +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999974 2589999999999999999999999999999999999999999999999999876654 45777
Q ss_pred ceEEecCCC---Ccc-ccHHHHHhcC-----cC----CCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHH
Q 002434 387 IGLVTQEPA---LLS-LSIRDNIAYG-----RD----ATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQK 452 (922)
Q Consensus 387 i~~v~Q~~~---lf~-~ti~eNi~~~-----~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqk 452 (922)
++|++|++. +|. .|+.+|+.+. .. .+..+.. ....+.+..+ |+. -.......+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 6777763221 11 1111111 1122334443 221 123556678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
||++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 58999999999998865 99999999999998886643
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=285.88 Aligned_cols=203 Identities=24% Similarity=0.345 Sum_probs=175.0
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC--Cc-cc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA--LL-SL 399 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ 399 (922)
++++|+++|++|+.|+++-|+|.||||||||++.|+|.+.|++|+|+|||+|+..++.......++-|+|||- .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4679999999999999999999999999999999999999999999999999999999998889999999996 45 48
Q ss_pred cHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCC
Q 002434 400 SIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473 (922)
Q Consensus 400 ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEp 473 (922)
||.||+.++.. .+.. ...-.+..-.+.+..++.|++-.++.+-.-|||||||-++|+.|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 99999998631 2211 111123334456788899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcch-hhccCEEEEEeCCeEEEecC
Q 002434 474 TGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSL-IRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 474 ts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~~~~D~i~vl~~G~i~~~G~ 527 (922)
|+||||.+...+++.-.+.- .+-|+++|||+++. +...+|.++|++|+|+-+=+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999988766542 35699999999976 56699999999999997543
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=282.97 Aligned_cols=155 Identities=43% Similarity=0.644 Sum_probs=144.8
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++|++|.|++ .++|+++||+|++|++++|+|+||||||||+++|.|+++|++|+|+++|.++.......++++++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 36899999963 369999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEE
Q 002434 390 VTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469 (922)
Q Consensus 390 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ili 469 (922)
++| |||||+||++||||++.+|+++|
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 470 LDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
|||||++||..++..+.+.+.++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988754 5899999999999988 69999999975
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.7e-34 Score=289.00 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=132.4
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEe
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 391 (922)
.|++++|+ +.++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~---~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYG---VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEEC---CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 58899994 35789884 999999999999999999999999999999999999999995 388999
Q ss_pred cCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEe
Q 002434 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471 (922)
Q Consensus 392 Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLD 471 (922)
|++. ||||||||++||||++.+|+++|||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8753 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 472 EVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 472 Epts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||++||+.+++.+.+.++++. + ++|+|++||+++.+.. ||+|++|+++-.+.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 9999999999999999998874 3 3899999999999875 99999999886653
No 341
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-33 Score=336.23 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 324 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEEC---CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 499999999995 34699999999999999999999999999999999999999999999954 2 169
Q ss_pred eEEecCC-CCcc-ccHHHHHhcCcC---CC--HHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEP-ALLS-LSIRDNIAYGRD---AT--LDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~-~lf~-~ti~eNi~~~~~---~~--~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRiaiAR 459 (922)
|||+|++ .++. .|++||+.++.. .. +.+..++ +..+ |+.. ........||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY---------VGRF--NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH---------HHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 5664 699999987632 11 1222222 2222 2321 234455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeC-CeEE-EecCHHHHhhc
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE-GRLF-EMGTHDELLAT 534 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~-G~i~-~~G~~~eL~~~ 534 (922)
|++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999998863 489999999998876 999999996 7886 47888776543
No 342
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-33 Score=336.04 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=162.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 499999999995 34699999999999999999999999999999999999999999999955 2 169
Q ss_pred eEEecCCC-Ccc-ccHHHHHhcCcC---CC--HHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPA-LLS-LSIRDNIAYGRD---AT--LDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~-lf~-~ti~eNi~~~~~---~~--~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRiaiAR 459 (922)
+|++|++. ++. .|++||+.++.. .. +.+..+ .+..+ |++. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999974 664 799999998642 11 111222 23332 3322 234456789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeC-CeEE-EecCHHHHh
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDE-GRLF-EMGTHDELL 532 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~-G~i~-~~G~~~eL~ 532 (922)
|++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 9999999999999999999999999999998873 489999999998876 999999997 5876 567876654
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.4e-33 Score=339.93 Aligned_cols=198 Identities=23% Similarity=0.338 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+|+|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999953 34699999999999999999999999999999999999999999999876 2379
Q ss_pred eEEecCCCCccccHHHHHhc--C---cCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPALLSLSIRDNIAY--G---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi~~--~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+|++|++. ...++.+|..+ . ....++++.++++..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 23345555332 1 12345566666655554321 123445789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEE-EecCHHHH
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDEL 531 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~-~~G~~~eL 531 (922)
.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999998888765 3599999999999876 9999999999998 67887764
No 344
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=301.71 Aligned_cols=226 Identities=27% Similarity=0.423 Sum_probs=185.4
Q ss_pred EEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEeCCCCCHHH
Q 002434 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-----~~G~I~i~g~~i~~~~~~~ 382 (922)
++++|++..|... ....++++|||+|++||++||||+||||||-..+.++|+++- .+|+|.++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 7899998888532 345799999999999999999999999999999999999875 3689999999999999888
Q ss_pred Hhh----cceEEecCCCC-cc--ccH----HHHHhcCcCCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCC
Q 002434 383 LRS----QIGLVTQEPAL-LS--LSI----RDNIAYGRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (922)
Q Consensus 383 lr~----~i~~v~Q~~~l-f~--~ti----~eNi~~~~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~L 447 (922)
+|+ +|+.++|||.- .| -|| .|-|.+.+..+ .+++.+.++.+++.+- ...+..-..+|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHeL 158 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHEL 158 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCccc
Confidence 875 79999999962 22 354 45555544333 3455555666654321 12233445689
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEE
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
|||||||+.||.||..+|++||-||||.|||...+.+|.+.|+++. .|-.+++|||+|..++. ||||+||.+|+|+|
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999998875 37899999999999988 99999999999999
Q ss_pred ecCHHHHhhc-CcHHHHHH
Q 002434 525 MGTHDELLAT-GDLYAELL 542 (922)
Q Consensus 525 ~G~~~eL~~~-~~~~~~l~ 542 (922)
.|+.++|.+. ...|.+.+
T Consensus 239 ~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 239 TGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred cCcHHHHhhCCCChHHHHH
Confidence 9999999986 35565544
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=338.99 Aligned_cols=198 Identities=24% Similarity=0.334 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 499999999995 356999999999999999999999999999999999999999999999741 269
Q ss_pred eEEecCC--CCcc-ccHHHHHhc-CcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEP--ALLS-LSIRDNIAY-GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~--~lf~-~ti~eNi~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
||++|++ .+.. .|+.+++.. ......+++.+.++..++. ...+......||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQ----------GDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCC----------hhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 588888742 1122233333333333321 012334456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEE-EecCHHHH
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDEL 531 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~-~~G~~~eL 531 (922)
+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99999999999999999999999999887 3599999999999876 9999999999997 78998875
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-33 Score=359.29 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCC----------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC--CCcEEEECCEeC
Q 002434 308 NIEFRNVYFSYLSR----------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENI 375 (922)
Q Consensus 308 ~i~~~~v~f~y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~i 375 (922)
.+.++||++..+.. +...+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 124699999999999999999999999999999999999774 789999999876
Q ss_pred CCCCHHHHhhcceEEecCCCCcc-ccHHHHHhcCc------CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCC
Q 002434 376 KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAG 444 (922)
Q Consensus 376 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G 444 (922)
. ...+|+.+|||+|++.+++ .||+|||.++. +.+.++ ++++++..++ .+-.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL-------~~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL-------DNLKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCC-------hhHhCCccCCCC
Confidence 4 2456778999999988775 79999998752 123222 3344444443 333577887654
Q ss_pred -CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch--hhccCEEEEEeC-
Q 002434 445 -LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDE- 519 (922)
Q Consensus 445 -~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~D~i~vl~~- 519 (922)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998875 58999999999984 466999999996
Q ss_pred CeEEEecCHHH
Q 002434 520 GRLFEMGTHDE 530 (922)
Q Consensus 520 G~i~~~G~~~e 530 (922)
|+++..|+..+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998754
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-33 Score=285.15 Aligned_cols=209 Identities=26% Similarity=0.353 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~ 386 (922)
-|+++||++.|. ++++|+|||++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999994 5689999999999999999999999999999999999999999999999999988877 999999
Q ss_pred ceEEecCCCC-c--cccHHHHHhcCc---------CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 387 IGLVTQEPAL-L--SLSIRDNIAYGR---------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 387 i~~v~Q~~~l-f--~~ti~eNi~~~~---------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
||+|+-+-.. | +.+++|-+.=|. ++++++..++-... +. .|.....+..=..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll------e~--~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL------EL--LGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH------HH--cchhhhccCchhhcCHhHHHH
Confidence 9999875432 2 467777765331 34555544332221 11 133334444556899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
+-|||||+++|.+||||||+++||...++.+.+.+.++.. +.|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999988753 5789999999988755 89999999999999874
No 348
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3e-33 Score=338.62 Aligned_cols=198 Identities=21% Similarity=0.327 Sum_probs=160.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++||+++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEEC---CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 489999999995 346999999999999999999999999999999999999999999999 4322 59
Q ss_pred eEEecCC-CCcc-ccHHHHHhcCc-CC--C--HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 388 GLVTQEP-ALLS-LSIRDNIAYGR-DA--T--LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 388 ~~v~Q~~-~lf~-~ti~eNi~~~~-~~--~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+|++|++ .+++ .|+.||+.++. .. + ..++.+.++..++ + ..........||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-------~---~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLF-------H---PKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCC-------C---HHHHhChhhhCCHHHHHHHHHHHH
Confidence 9999986 4664 69999998753 11 1 1122222222211 1 011233446799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEe-CCeEEE-ecCHHHH
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD-EGRLFE-MGTHDEL 531 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~-~G~i~~-~G~~~eL 531 (922)
++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++|+ +|++.+ .|++++-
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999999876 4699999999998865 99999998 899876 5677764
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.9e-33 Score=332.44 Aligned_cols=192 Identities=19% Similarity=0.191 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999952 35999999999999999999999999999999999999999999986 159
Q ss_pred eEEecCCCCc-cccHHHHHhcCc-CCC-HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 388 GLVTQEPALL-SLSIRDNIAYGR-DAT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 388 ~~v~Q~~~lf-~~ti~eNi~~~~-~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
+|+||++.++ +.|++||+.++. ... .....++++..++ +........+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l-----------~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-----------ERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC-----------HHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998764 689999998763 222 2223334443333 3333455668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++ ++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 999999999999999999999999998743 7899999999998865 999999965 88877773
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-33 Score=334.50 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=160.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g---~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG---VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 78999999995 3579999999999999999999999999999999999999999999999842 488
Q ss_pred EEecCCCCccccHHHHHhcCc-C---CCH-----------HHHHHHHH----------HHHHHHhHHHhhccch-hhhcC
Q 002434 389 LVTQEPALLSLSIRDNIAYGR-D---ATL-----------DQIEEAAK----------IAHAHTFISSLEKGYE-TQVGR 442 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~-~---~~~-----------~~~~~~~~----------~~~l~~~i~~l~~g~~-t~vge 442 (922)
|++|++..+..|+.+++.-+. . .+. ..+..... ...+...+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976555566666554221 0 000 00000000 01122223332 332 22344
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
....||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 56789999999999999999999999999999999999999999998775 5799999999999876 99999999999
Q ss_pred EE-EecCHHHHhh
Q 002434 522 LF-EMGTHDELLA 533 (922)
Q Consensus 522 i~-~~G~~~eL~~ 533 (922)
++ ..|++++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 96 4788887664
No 351
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-33 Score=270.66 Aligned_cols=227 Identities=26% Similarity=0.423 Sum_probs=180.4
Q ss_pred EEEEeEEEEeCCC------CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH
Q 002434 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 309 i~~~~v~f~y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~ 382 (922)
++++|+++++..+ ....+.+.|||++++|+++||+|.||||||||.++|.|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 5667776665432 2245789999999999999999999999999999999999999999999999998777777
Q ss_pred HhhcceEEecCCC-Ccc-----ccHHHH-HhcCcC----CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 383 LRSQIGLVTQEPA-LLS-----LSIRDN-IAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 383 lr~~i~~v~Q~~~-lf~-----~ti~eN-i~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
..++|-.++|||. -|| |+|.|- +.+..+ ...+++.+-++.+|+ +|+--+. ....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCchh
Confidence 7789999999996 343 333221 111112 234566677777776 3442211 235799999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
|||+|+||||+-+|+|+|.||+..+||...+.++.+...++ +.|..-|.|+.++..+++ +|+|+||++|+++|.|+.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999998887655 348889999999999999 999999999999999999
Q ss_pred HHHhhcC--cHHHHHHHhH
Q 002434 529 DELLATG--DLYAELLKCE 545 (922)
Q Consensus 529 ~eL~~~~--~~~~~l~~~~ 545 (922)
.++++.. ..-+++++..
T Consensus 235 ~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 235 ADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhcCCccHHHHHHHHHH
Confidence 9998753 4455555543
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.6e-33 Score=279.77 Aligned_cols=156 Identities=22% Similarity=0.355 Sum_probs=129.0
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHH
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 402 (922)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457899999999999999999999999999999996 369999998762 111 2345888887
Q ss_pred HHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC--CCEEEEeCCCCCCCHH
Q 002434 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN--PSILLLDEVTGGLDFE 480 (922)
Q Consensus 403 eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~--p~iliLDEpts~LD~~ 480 (922)
.++ +..+.-+.. ....+..+||||||||++||||++++ |+++||||||++||+.
T Consensus 68 --------------~~~---------l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQF---------LIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HHH---------HHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 122 222221111 25667789999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 481 AERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 481 ~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
+.+.+.+.|+++. .++|+|++||+++.++.||+|++|++|+
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999998875 5899999999999998899999997644
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-32 Score=355.86 Aligned_cols=206 Identities=18% Similarity=0.212 Sum_probs=168.9
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC----CCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY----DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~----~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (922)
+++|+|+|+++++||+++|+||||||||||+++|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 578999999999886554 346778999999998886
Q ss_pred ccHHHHHhcCcC----------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcC-CCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 399 LSIRDNIAYGRD----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGR-AGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 399 ~ti~eNi~~~~~----------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge-~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
.|++||+.|+.. .+.++..+.....-++. -.|.+-.||.+|+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 799999998521 22333221110000111 1344556888875 5678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCc-chh-hccCEEEEEeCCeEEEecCHHHHh
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRL-SLI-RNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l-~~~-~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|+|||||++||+.+...+.+.|+++.+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999998753 78999999997 445 559999999999999999998875
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.98 E-value=1.4e-31 Score=324.07 Aligned_cols=206 Identities=28% Similarity=0.414 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~---~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFS---DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeC---CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 89999999995 3579999999999999999999999999999999999999999999998731 367
Q ss_pred EEecCCCCc-cccHHHHHhcCcC-------------------CCHHHHHHHHH-------------HHHHHHhHHHhhcc
Q 002434 389 LVTQEPALL-SLSIRDNIAYGRD-------------------ATLDQIEEAAK-------------IAHAHTFISSLEKG 435 (922)
Q Consensus 389 ~v~Q~~~lf-~~ti~eNi~~~~~-------------------~~~~~~~~~~~-------------~~~l~~~i~~l~~g 435 (922)
|++|++... .+++.+++..+.. ...+.+..... ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 888876432 3677776542210 00010100000 01112222222 2
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEE
Q 002434 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYI 514 (922)
Q Consensus 436 ~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i 514 (922)
+. .......||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 13455789999999999999999999999999999999999999999999877 3699999999999876 9999
Q ss_pred EEEeCCeEEE-ecCHHHHhhc
Q 002434 515 AVMDEGRLFE-MGTHDELLAT 534 (922)
Q Consensus 515 ~vl~~G~i~~-~G~~~eL~~~ 534 (922)
++|++|+++. .|++++.+..
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 9999999984 6999886643
No 355
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=6.5e-32 Score=265.45 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC-EeCCCCCHHHH-hh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG-ENIKNLKLEWL-RS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g-~~i~~~~~~~l-r~ 385 (922)
-++++||+.+|+ .-.+|+|+||++.+||.-+|+||||+||||++..|+|--+|+.|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~---GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFG---GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEc---ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 378999999995 46799999999999999999999999999999999999999999999999 99999987665 56
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcCC---------------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRDA---------------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~---------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG 449 (922)
.||-=+|.|..|. -||+||+.+.... ..+++.+.+...++.+ ....-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-----------~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-----------ERDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-----------hhhhhhhhhcc
Confidence 7999999999995 8999999876321 1224555555444433 33334568999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCH
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~ 528 (922)
||||++-|+.-+.++|++|+||||++++-.+.....-+.++.+..++++++|-|++.+++. ||+|-||+.|.+..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999777777788889999999999999999999987 999999999999999999
Q ss_pred HHHhhc
Q 002434 529 DELLAT 534 (922)
Q Consensus 529 ~eL~~~ 534 (922)
+|+.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998654
No 356
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.9e-31 Score=271.59 Aligned_cols=187 Identities=25% Similarity=0.387 Sum_probs=158.0
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc--ccc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL--SLS 400 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf--~~t 400 (922)
..++|+||||++++||.+||||+||||||||+++|.|.|+|++|+|.++| +|+.+-.-..=| +.|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 34689999999999999999999999999999999999999999999999 344333333333 379
Q ss_pred HHHHHhcCc---CCC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCC
Q 002434 401 IRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473 (922)
Q Consensus 401 i~eNi~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEp 473 (922)
-||||.+-. ..+ ++.+++..+-+.|.+|+.. + -.+.|-|++-||+.|-|.-.+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-------P----vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-------P----VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-------c----hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 999998632 233 4445666667777777642 2 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 474 TGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 474 ts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
.+..|+.=.++=.+.+.++ .+++|+|+|||+++.++. ||++++|++|+|...|+++|.++
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999777777777777 678999999999999987 99999999999999999999875
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=5.5e-32 Score=348.38 Aligned_cols=207 Identities=17% Similarity=0.308 Sum_probs=169.0
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-c
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-L 399 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 399 (922)
+.+|+|+|+.|+|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... |+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 46899999999999999999999999999999999999998 9999999999876542 678999999988875 7
Q ss_pred cHHHHHhcCcC-------C------CHH----------HHHHHHHHH---------HHHHhHH--HhhccchhhhcCC-C
Q 002434 400 SIRDNIAYGRD-------A------TLD----------QIEEAAKIA---------HAHTFIS--SLEKGYETQVGRA-G 444 (922)
Q Consensus 400 ti~eNi~~~~~-------~------~~~----------~~~~~~~~~---------~l~~~i~--~l~~g~~t~vge~-G 444 (922)
||+||+.|+.. . +.+ ++....+++ ..+..++ .|.+-.||.||+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999998521 0 111 111011110 0122333 3455568888764 4
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcc--hhhccCEEEEEeCC
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLS--LIRNADYIAVMDEG 520 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~D~i~vl~~G 520 (922)
..||||||||++|||+++.+|++|+|||||++||+.+...+.+.|+++. .++|+|+++|+++ ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999884 3789999999973 44569999999999
Q ss_pred eEEEecCHHHHhh
Q 002434 521 RLFEMGTHDELLA 533 (922)
Q Consensus 521 ~i~~~G~~~eL~~ 533 (922)
+++..|+.+++..
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999998863
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-31 Score=266.33 Aligned_cols=214 Identities=29% Similarity=0.419 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC--CCCCCcEEEECCEeCCCCCHHHH-h
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWL-R 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~--~~~~~G~I~i~g~~i~~~~~~~l-r 384 (922)
-++++|++.+-.+ .+++|++|||+|++||+.+|.||||||||||.+.|+|. |++++|+|.+||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 3789999998742 14899999999999999999999999999999999996 68999999999999999998765 6
Q ss_pred hcceEEecCCCCccc-cHHHHHhcCcC----C------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 385 SQIGLVTQEPALLSL-SIRDNIAYGRD----A------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
..|...+|.|.=++| |+.+-+..+.+ . ..+++.++++..++++.. ++..|+ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHH
Confidence 679999999998875 88888876431 1 134555566655555421 222333 359999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~~e 530 (922)
|.-|+.+++.+|++.|||||-|+||..+-+.|-+.+..++ +++++++|||+-..+.. .|++.||-+|+|+.+|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 58899999999888877 499999999999999999 7
Q ss_pred Hhh
Q 002434 531 LLA 533 (922)
Q Consensus 531 L~~ 533 (922)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 764
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=4.4e-32 Score=323.43 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=155.5
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE-----------ECCEeCCCCCH
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKL 380 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~-----------i~g~~i~~~~~ 380 (922)
++++++|+. +..+|++++ ++++|+++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 347999952 346899999 9999999999999999999999999999999999997 99998865432
Q ss_pred HH--Hhhc----ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 381 EW--LRSQ----IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 381 ~~--lr~~----i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
+- .+.+ +.|++|.|.+|.+|++||+.... ..+++.++++..++ +........+||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l-----------~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGL-----------ENILDRDISELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHH
Confidence 11 1122 44556667788899999997421 12334444444433 333344556899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEG 520 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G 520 (922)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999988668999999999999876 9999999874
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=307.11 Aligned_cols=208 Identities=30% Similarity=0.462 Sum_probs=166.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ ++++++|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 489999999994 468999999999999999999999999999999999999999999998762 169
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcCC---CHHHHHHHHH------------------H-------HHHHHhHHHhhccchh
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRDA---TLDQIEEAAK------------------I-------AHAHTFISSLEKGYET 438 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~~---~~~~~~~~~~------------------~-------~~l~~~i~~l~~g~~t 438 (922)
+|++|++.+.+ .|+.+.+..+... -..+++++.. . +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999996 5999999877421 1111111110 0 1111122222 2222
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEE
Q 002434 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVM 517 (922)
Q Consensus 439 ~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl 517 (922)
. ...-.+||||||.|++|||||+.+||+|||||||++||.++..-+.+.|.+. +| |+|+|||+-.++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 1 2334679999999999999999999999999999999999999999999765 45 99999999999988 9999999
Q ss_pred eCCeEE-EecCHHHHhhc
Q 002434 518 DEGRLF-EMGTHDELLAT 534 (922)
Q Consensus 518 ~~G~i~-~~G~~~eL~~~ 534 (922)
++|++. ..|+|+.-++.
T Consensus 224 d~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred cCCceeEecCCHHHHHHH
Confidence 999874 57888876654
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=251.47 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=162.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCCCHHHHh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~~~~~lr 384 (922)
-+.++||+.+-+ +.-.|-|+||+|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 367899998775 446899999999999999999999999999999999999885 79999999999998865 5
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcC------CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+++|+++||++||+ -+|-+||.|.-. +.......|+++.+++.+..+.|+ +||||||.|+++
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHH
Confidence 79999999999996 899999999742 223345566677777776666654 699999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH-cCCCeEEEEecCcchhhccCEEEEE
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLL-MLGRSTIIIARRLSLIRNADYIAVM 517 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~-~~~~t~i~itH~l~~~~~~D~i~vl 517 (922)
-|+|+..|+.++||||+|.||..-+.++.+-+ .+. ..+.-+|.|||+++.+..-.||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999888887765 333 3478899999999988755555544
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.1e-30 Score=316.76 Aligned_cols=220 Identities=20% Similarity=0.258 Sum_probs=164.3
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC---CCCCcEEEECCEeCCCC--CH-
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY---DPTLGEVLLDGENIKNL--KL- 380 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~---~~~~G~I~i~g~~i~~~--~~- 380 (922)
..|+++|++|+|+ +.++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~---~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVG---GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeC---CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 3599999999995 346999999999999999999999999999999999864 58899998655443211 11
Q ss_pred -----------HHHhhcceEEecCCCCccccHHHHHhcCc--CCCH----HHHHHHHHHHHH----------HHhHHHhh
Q 002434 381 -----------EWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATL----DQIEEAAKIAHA----------HTFISSLE 433 (922)
Q Consensus 381 -----------~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~----~~~~~~~~~~~l----------~~~i~~l~ 433 (922)
..+++.+++++|+|.+...+..+|..... ..+. +++.++.+..++ ...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 11355689999988765445545542211 1122 233333333322 1122222
Q ss_pred ccch-hhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-c
Q 002434 434 KGYE-TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (922)
Q Consensus 434 ~g~~-t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 511 (922)
|++ ......-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 222 1122334689999999999999999999999999999999999999999999876 6899999999999877 9
Q ss_pred CEEEEEeCCeEE-EecCHHHHhh
Q 002434 512 DYIAVMDEGRLF-EMGTHDELLA 533 (922)
Q Consensus 512 D~i~vl~~G~i~-~~G~~~eL~~ 533 (922)
|+|++|++|+++ ..|++++...
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 6888877654
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=7.6e-31 Score=313.41 Aligned_cols=219 Identities=29% Similarity=0.419 Sum_probs=182.7
Q ss_pred ccEEEEeEEEEeCCCC--CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC---CCcEEEECCEeCCCCCHH
Q 002434 307 GNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP---TLGEVLLDGENIKNLKLE 381 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~---~~G~I~i~g~~i~~~~~~ 381 (922)
-.++++|++..-+... .+.+|+|||.+++|||..||.||||||||||+++|+|-.+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3589999999886542 46799999999999999999999999999999999999875 7899999994 45667
Q ss_pred HHhhcceEEecCCCCcc-ccHHHHHhcCc------CCCHHHHHHHHHHHHHHHhHHHhh--ccchhhhcC-CCCCCCHHH
Q 002434 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQIEEAAKIAHAHTFISSLE--KGYETQVGR-AGLALTEEQ 451 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~------~~~~~~~~~~~~~~~l~~~i~~l~--~g~~t~vge-~G~~LSGGq 451 (922)
.+|+..|||+||..+++ .||+|++.|.. ..+.++..+..+ +.+..|. +=-||.+|. ++..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~-----~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVE-----EVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHHHcCChhhccceecCCCCCccccch
Confidence 88999999999999985 89999999863 223343333222 2233322 225788874 446899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch--hhccCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~D~i~vl~~G~i~~~G~~ 528 (922)
|+|++||.-++.||+||+||||||+||+.+..++.+.|+++. +|||||+.-|+++. ....|++++|.+|+++..|+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999999874 58999999999863 567999999999999999999
Q ss_pred HHHhh
Q 002434 529 DELLA 533 (922)
Q Consensus 529 ~eL~~ 533 (922)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88764
No 364
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.5e-31 Score=270.54 Aligned_cols=207 Identities=26% Similarity=0.380 Sum_probs=162.4
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEe-cCCCCc-cccH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT-QEPALL-SLSI 401 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~-Q~~~lf-~~ti 401 (922)
.++.+||||+|++|++++++|+||+||||++|+|.|+..|++|.|.++|.+-.+-..+.+ +++++|. |...+. .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechh
Confidence 358999999999999999999999999999999999999999999999987766443334 4565553 332222 1224
Q ss_pred HHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCC
Q 002434 402 RDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478 (922)
Q Consensus 402 ~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD 478 (922)
.|-+..-+ +.+++++.+-.. .+.+-| +++..+-..-..||-|||.|.-||.||+++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 44443322 455555544322 222222 45555666678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcCcHH
Q 002434 479 FEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLY 538 (922)
Q Consensus 479 ~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~~~~ 538 (922)
..++..|.+.+++.. .+.|+++.||.++-+.. ||||+.|++|+++..|+.++|.+.-+.|
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~ 251 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCc
Confidence 999999999998764 57899999999998866 9999999999999999999997664433
No 365
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=8.7e-31 Score=255.49 Aligned_cols=136 Identities=36% Similarity=0.623 Sum_probs=123.1
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHH
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNI 405 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi 405 (922)
|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|.++...+...+|+.++|++|++.+|. .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999999999999999999999999997 569999
Q ss_pred hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCC
Q 002434 406 AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475 (922)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts 475 (922)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23556666666665533 45778888889999999999999999999999999999996
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.9e-30 Score=246.20 Aligned_cols=223 Identities=24% Similarity=0.386 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC-----EeCCCCCHHH-
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG-----ENIKNLKLEW- 382 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g-----~~i~~~~~~~- 382 (922)
++++++++.|.+ ..-.+||||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+..++..+
T Consensus 7 L~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 7 LSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred eeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 789999999964 3579999999999999999999999999999999999999999998865 3444554444
Q ss_pred ---HhhcceEEecCCC--Cc-c----ccHHHHHhc-Cc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH
Q 002434 383 ---LRSQIGLVTQEPA--LL-S----LSIRDNIAY-GR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (922)
Q Consensus 383 ---lr~~i~~v~Q~~~--lf-~----~ti~eNi~~-~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG 450 (922)
+|..-|+|.|+|. |- . +.|-|-+.- |. .+. ++. +.+.+|++...-. .+.+.+....+|||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR-----~~a~~WL~~VEI~-~~RiDD~PrtFSGG 155 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIR-----AEAQDWLEEVEID-LDRIDDLPRTFSGG 155 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHH-----HHHHHHHHhcccC-cccccCcccccchH
Confidence 3456799999995 21 1 233333321 11 111 121 2234566655433 34567788999999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~ 527 (922)
++||+.|||-|+..|+++++||||.+||...++.+.+.++.+-. +-.+|+|||++..++. +||..||++|+++|+|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999988753 6789999999999987 99999999999999998
Q ss_pred HHHHhhc-CcHHHHHH
Q 002434 528 HDELLAT-GDLYAELL 542 (922)
Q Consensus 528 ~~eL~~~-~~~~~~l~ 542 (922)
.+..+.. ...|.+++
T Consensus 236 TDrvLDDP~hPYTQLL 251 (258)
T COG4107 236 TDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccCCCCchHHHH
Confidence 8888765 35576665
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.2e-28 Score=282.34 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=169.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
.-++++|++++|++ ++++++++||.|++|+++|||||||+|||||+++|+|...|.+|+|.++-. -+
T Consensus 320 ~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 35899999999963 267999999999999999999999999999999999999999999988652 26
Q ss_pred ceEEecCC-CCc-cccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 387 IGLVTQEP-ALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 387 i~~v~Q~~-~lf-~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|||.+|+. .++ +.|+.|++.-.. +..+.++...+...+....- +......||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999987 344 469999998655 33466777777666543221 123445799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEe-cCHHHHhh
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM-GTHDELLA 533 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~-G~~~eL~~ 533 (922)
+|.+|||||||..||.++...+.++|... ..|+|+|||+...+.. |++|+.+++ ++.+. |++++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999876 4699999999999988 999999999 77665 88887654
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.2e-28 Score=261.32 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=128.6
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHH-HHHhcCCCCCCcEEEEC-C------EeCCCC---CHHHHhh-cceEE
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSII-PLMERFYDPTLGEVLLD-G------ENIKNL---KLEWLRS-QIGLV 390 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~-~ll~g~~~~~~G~I~i~-g------~~i~~~---~~~~lr~-~i~~v 390 (922)
+.++|+|+||+|++||+++|+|+||||||||+ ..+. .+|++.+. + ..+..+ ....++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 4443 13433221 0 011000 0111111 23444
Q ss_pred ecCCC-Ccc--ccH---HHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 391 TQEPA-LLS--LSI---RDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 391 ~Q~~~-lf~--~ti---~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
.|++. .++ .++ .+...+.+. ...++..+. .+.+..+ |+.. .......+||||||||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 45443 221 122 222221110 011111111 1223332 3333 356677899999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCCeEEEec
Q 002434 463 LNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMG 526 (922)
Q Consensus 463 ~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G~i~~~G 526 (922)
.+| ++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 5999999999999999999999998764 588999999999999889999999 999999987
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-29 Score=244.72 Aligned_cols=186 Identities=23% Similarity=0.356 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++.+|++.. +++..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|.++|.++.... ++.++.+-
T Consensus 3 L~a~~L~~~---R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCE---RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhc---cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 445666654 35668999999999999999999999999999999999999999999999999888765 33577889
Q ss_pred EEecCCCCcc-ccHHHHHhcCc----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|+...+-+=. .|+.||+.|.. ..+.+.+++|+..+++..+ ..+|-+ +||-|||+|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~----------~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG----------QLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh----------hcchhHHHHHHHHHHHcC
Confidence 9999998874 89999999975 2467889999999998654 334443 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhh
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIR 509 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~ 509 (922)
.+|+.|||||+++||.+....+...+... .+|..||..||..-.+.
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999998888654 46888999999865543
No 370
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.95 E-value=3.5e-25 Score=244.67 Aligned_cols=335 Identities=18% Similarity=0.219 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 155 LHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLW 234 (922)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (922)
..++..+.....+.....=...+.+-+.|-.|+..+.+.++.++..+..............+..-+-+++. =..|
T Consensus 288 Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~m-----KYvW 362 (728)
T KOG0064|consen 288 FGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVM-----KYTW 362 (728)
T ss_pred hhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhh
Confidence 34444444555555566667788999999999999999888877766655544443333333322222221 1122
Q ss_pred HHHHHH------------HcCCcc---HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cC
Q 002434 235 VGRFLV------------THNKAH---GG-----EIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMIS---RS 291 (922)
Q Consensus 235 ~g~~lv------------~~g~lt---~g-----~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~---~~ 291 (922)
-|.-+| ..++.. .| .+.+.=-.+..+..++..++..+-.+.+-..--.|+++.++ ..
T Consensus 363 sg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv 442 (728)
T KOG0064|consen 363 SGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDV 442 (728)
T ss_pred ccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 221111 111111 01 11111111122233455566666666666666677765432 11
Q ss_pred ----------CCCCC-------CCCCCCCC-----CcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCc
Q 002434 292 ----------SSTTN-------YDGNTLPS-----VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349 (922)
Q Consensus 292 ----------~~~~~-------~~~~~~~~-----~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 349 (922)
++..+ .++.+.+. ....|.++||-.--|+. ..+...++|+|++|-.+.|.||||||
T Consensus 443 ~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCG 520 (728)
T KOG0064|consen 443 HKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCG 520 (728)
T ss_pred hcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCcc
Confidence 00000 01111111 12349999998877643 35789999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--------CCCHHHHHHHHH
Q 002434 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--------DATLDQIEEAAK 421 (922)
Q Consensus 350 KSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--------~~~~~~~~~~~~ 421 (922)
||+|.+.|.|++|...|...+-- +.+|-|+||.|+.=-||+||-|-|.. .++|+++.+.++
T Consensus 521 KSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 521 KSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILD 589 (728)
T ss_pred HHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999888776532 23699999999988899999998863 588999999999
Q ss_pred HHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 002434 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501 (922)
Q Consensus 422 ~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 501 (922)
.+.++..+ +-..|+|..- +--.-||||+|||+++||.++++|+.-+|||+|||+..+.|..+.++.++. |-+.|-|
T Consensus 590 ~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsi 665 (728)
T KOG0064|consen 590 IVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSI 665 (728)
T ss_pred HhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEe
Confidence 99997544 4456666543 333569999999999999999999999999999999999999999988764 7899999
Q ss_pred ecCcchhhcc
Q 002434 502 ARRLSLIRNA 511 (922)
Q Consensus 502 tH~l~~~~~~ 511 (922)
|||++..+.-
T Consensus 666 thrpslwk~h 675 (728)
T KOG0064|consen 666 THRPSLWKYH 675 (728)
T ss_pred ecCccHHHHH
Confidence 9999887653
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.2e-28 Score=258.85 Aligned_cols=194 Identities=22% Similarity=0.375 Sum_probs=142.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh-----c-CC----CCCCc-----------EEEECCEeCCCCCHHH-
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-----R-FY----DPTLG-----------EVLLDGENIKNLKLEW- 382 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-----g-~~----~~~~G-----------~I~i~g~~i~~~~~~~- 382 (922)
..|+|++++||.|..++|.|+||||||||++.++ + +. .|..+ -|.+|..++..-+...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3599999999999999999999999999998663 1 11 13222 3566665554322111
Q ss_pred ---------Hhh----------------cceEEecCCCC-ccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccc
Q 002434 383 ---------LRS----------------QIGLVTQEPAL-LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGY 436 (922)
Q Consensus 383 ---------lr~----------------~i~~v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~ 436 (922)
+|+ .+.|..++... .+.|+.||+.|..... ++.++ .+.+..+ |+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~~~~------~~~L~~v--gL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KIARK------LQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hHHHH------HHHHHHc--CC
Confidence 111 13444444443 3567777776654211 11111 1222222 45
Q ss_pred hh-hhcCCCCCCCHHHHHHHHHHHhhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhcc
Q 002434 437 ET-QVGRAGLALTEEQKIKLSIARAVLLN---PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 437 ~t-~vge~G~~LSGGqkQRiaiARAl~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~ 511 (922)
+. ..++...+||||||||++|||||+++ |+++||||||++||+.....+.+.|+++. ++.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 44 46888899999999999999999996 79999999999999999999999998875 478999999999999999
Q ss_pred CEEEEE------eCCeEEEecCH
Q 002434 512 DYIAVM------DEGRLFEMGTH 528 (922)
Q Consensus 512 D~i~vl------~~G~i~~~G~~ 528 (922)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=4.2e-28 Score=251.40 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=133.1
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC---------cEEEECCEeCCCCCHHHHhhcceEEecCCCCcc
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---------GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS 398 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~---------G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~ 398 (922)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|.++... ..+++|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6899999999 999999999999999999999986653 4688888776542 2357899999999887
Q ss_pred ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc----cCCCEEEEeCCC
Q 002434 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVT 474 (922)
Q Consensus 399 ~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~----~~p~iliLDEpt 474 (922)
|+.. ..+++.++++. ++-. ......||||||||++||||+. ++|+++||||||
T Consensus 89 --------~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 2211 13344444443 1112 2345679999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 475 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
++||+.....+.+.|+++.++.|+|+|||+++.++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999998778999999999999988999999864
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=5.6e-28 Score=300.73 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC-CHHHHhh
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-KLEWLRS 385 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~-~~~~lr~ 385 (922)
..+..+|+++.|+.+.. +.+++|+.|++||+.++.|+|||||||++++|.|..+|++|++.++|.++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 45899999999975422 89999999999999999999999999999999999999999999999999764 4556899
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc---CCCHHHHHHH----HHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEA----AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~~~~~----~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
++||+||+..|+. .|.||.+.+.. .....++.++ ++..++.+. .+++ -.++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-------~~~~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-------ANKQ----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-------hccc----hhhCCCcchhhHHH
Confidence 9999999999996 89999998643 4444444444 444444332 2333 45899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG-RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~-~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|-|++.+|++++|||||+|+||.+++.+.+.+++..++ +.+|+.||.+++.+. |||+.+|.+|++..-|+.++|-.+-
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999999999999999999999999999988764 499999999999988 9999999999999999999997653
Q ss_pred c
Q 002434 536 D 536 (922)
Q Consensus 536 ~ 536 (922)
|
T Consensus 790 G 790 (885)
T KOG0059|consen 790 G 790 (885)
T ss_pred C
Confidence 3
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-27 Score=230.03 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=146.6
Q ss_pred EEEEeEEEEeCCC----CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC----EeCCCCCH
Q 002434 309 IEFRNVYFSYLSR----PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG----ENIKNLKL 380 (922)
Q Consensus 309 i~~~~v~f~y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g----~~i~~~~~ 380 (922)
+.++|++++|.-. -.-|||+|+||+++.||++++-||||+|||||+++|-+-|.|++|+|.+.. .|+....+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 6778887766311 124799999999999999999999999999999999999999999998843 34544444
Q ss_pred HH----HhhcceEEecCCCCcc-cc----HHHHHhcCcCCCHHHHHHHHHHHHHHHhHH--HhhccchhhhcCCCCCCCH
Q 002434 381 EW----LRSQIGLVTQEPALLS-LS----IRDNIAYGRDATLDQIEEAAKIAHAHTFIS--SLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 381 ~~----lr~~i~~v~Q~~~lf~-~t----i~eNi~~~~~~~~~~~~~~~~~~~l~~~i~--~l~~g~~t~vge~G~~LSG 449 (922)
.+ .|+.||||+|--...+ -+ +.|-+. .+....+.....+ .+.+. ++|+.+- .--...+||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a-----~~Ll~rLnlperLW---~LaPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKA-----ADLLTRLNLPERLW---SLAPATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHH-----HHHHHHcCCCHHHh---cCCCcccCC
Confidence 43 3667999999543322 12 222222 1222222211111 11222 2344332 223568999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeC
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDE 519 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~ 519 (922)
|++||+.|||+++-|-+||+|||||++||+.+++.+.+.|.+.+ +|..+|=|=|+-+.-+. |||++-|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999998765 57778889999876655 999988753
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.6e-27 Score=252.13 Aligned_cols=192 Identities=23% Similarity=0.260 Sum_probs=135.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh----------------cCCCCCCc-----
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME----------------RFYDPTLG----- 366 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~----------------g~~~~~~G----- 366 (922)
.|+++|. .+|. +..++++++ |++++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3666664 2353 345778876 8899999999999999999998 44455555
Q ss_pred ---EEEECCEeCCC-C--CHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhH--HHhhccc--
Q 002434 367 ---EVLLDGENIKN-L--KLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFI--SSLEKGY-- 436 (922)
Q Consensus 367 ---~I~i~g~~i~~-~--~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i--~~l~~g~-- 436 (922)
+|.+++.+-.. . ....+++++++++|++.++.. ..+.+++..+++..++...- ..+++|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 55555532211 0 122356678888887766541 23444555555554432210 0012221
Q ss_pred -----hhhhcCCCCCCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcch
Q 002434 437 -----ETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 437 -----~t~vge~G~~LSGGqkQRiaiARAl~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 507 (922)
+....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 22345678899999999999999996 468999999999999999999999999988777788888888887
Q ss_pred hhccCEEEEEe
Q 002434 508 IRNADYIAVMD 518 (922)
Q Consensus 508 ~~~~D~i~vl~ 518 (922)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77899999986
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=4.7e-27 Score=247.00 Aligned_cols=191 Identities=20% Similarity=0.189 Sum_probs=142.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEec-CCCEEEEeCCCCCcHHHHHHHHhc-CCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVP-AKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~-~G~~vaivG~sGsGKSTl~~ll~g-~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
.|+++|+. +|..+ ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58899988 76421 56777654 589999999999999999999994 666666665543 1222333344566
Q ss_pred cceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhcc-chhhhcCCCCCCCHHHHHHHHHHHhhcc-
Q 002434 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKG-YETQVGRAGLALTEEQKIKLSIARAVLL- 463 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g-~~t~vge~G~~LSGGqkQRiaiARAl~~- 463 (922)
.|++++|++.-... +..+. ..+.+++.+... ++.| +++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~----~~r~~-gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 77 EVSFTFQLGGKKYR----VERSR-GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEEECCeEEE----EEEec-CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 79999998843221 11222 334444433221 2223 5666778888999999999999999974
Q ss_pred ---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 464 ---------NPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 464 ---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|-
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6789999999999999999999999988865 7899999999998866 89999999985
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.7e-25 Score=249.33 Aligned_cols=214 Identities=24% Similarity=0.350 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i 387 (922)
++++|++.. ..++|+||++++||+++|.|--|||+|=++++|.|..++.+|+|.+||+++.--++ +..+..|
T Consensus 264 l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 264 LEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 667776532 14889999999999999999999999999999999999999999999999887765 4788899
Q ss_pred eEEecCCC---Cc-cccHHHHHhcCc--CCCHH-HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 388 GLVTQEPA---LL-SLSIRDNIAYGR--DATLD-QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 388 ~~v~Q~~~---lf-~~ti~eNi~~~~--~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+|||.|-. +| ..+|++||.+.. ..... -+....+.....+++..|.-.-.. ....-.+||||.+|++.|||.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchhhhhHHHHHH
Confidence 99999753 55 689999998872 11111 244455555566677766322111 123446899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHH
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~e 530 (922)
|..+|+||||||||-++|.-+.+.|.+.|+++. +|+++|+||..+.++- .||||+||++|+|+.+=+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999875 6899999999998765 599999999999998554444
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=4.8e-26 Score=220.04 Aligned_cols=207 Identities=22% Similarity=0.353 Sum_probs=174.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
+.++||+..- -|-.+|.++..||..-+|||||||||||+..+.|+.+ -+|+|.++|.++..+...++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776532 3678899999999999999999999999999999875 6899999999999999999999999
Q ss_pred EEecCC-CCccccHHHHHhcCcCC--CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc--
Q 002434 389 LVTQEP-ALLSLSIRDNIAYGRDA--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL-- 463 (922)
Q Consensus 389 ~v~Q~~-~lf~~ti~eNi~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~-- 463 (922)
|.+|+. ..|...|...+.+..+. -..++.+++.+. +++..+|..-.+|||||.||+-+|-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 999865 47889999999887643 123344444433 34555666778999999999999998875
Q ss_pred ---C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcc-hhhccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 ---N--PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ---~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~~~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
| .++||+|||.++||...+..+...|.++. .|.++|+..|+++ |++.||+++.+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 37999999999999999999988888775 6899999999995 8999999999999999999999998864
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.8e-25 Score=239.46 Aligned_cols=181 Identities=16% Similarity=0.221 Sum_probs=136.6
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCE-eCCCCC--HHHHhhcceEEecCCC---------Cc-cccHH
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGE-NIKNLK--LEWLRSQIGLVTQEPA---------LL-SLSIR 402 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~-~i~~~~--~~~lr~~i~~v~Q~~~---------lf-~~ti~ 402 (922)
..+++||||||||||||+++|.+++.+. .|+++..|. |+-... ....+..|++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888876 432111 1122458999999962 22 36788
Q ss_pred HHHhcCc---------CCCHHHHHHHHHHHHHHH----------hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc-
Q 002434 403 DNIAYGR---------DATLDQIEEAAKIAHAHT----------FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL- 462 (922)
Q Consensus 403 eNi~~~~---------~~~~~~~~~~~~~~~l~~----------~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~- 462 (922)
+||..+. ....+++.++++.+++.- .|..+-+. .........+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 7776542 123456667777666530 01111111 12344567789999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEe
Q 002434 463 ---LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 463 ---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
.+|+++||||||++||+.+...+.+.|+++.++.|+|+|||+.+.++.||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 58899999999999999999999999998888889999999988889999998775
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=4.6e-25 Score=230.04 Aligned_cols=164 Identities=23% Similarity=0.238 Sum_probs=130.0
Q ss_pred ceeEEecCCCEEEEeCCCCCcHHHHHHHHh----cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCC-----CCcc-
Q 002434 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLME----RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEP-----ALLS- 398 (922)
Q Consensus 329 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~----g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-----~lf~- 398 (922)
..++++.+| +++|+||||||||||+++|. |...|..|.+..+...+.. ...+..|++++|++ .++.
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEE
Confidence 344667777 99999999999999999994 9988888877622222222 23456899999998 3332
Q ss_pred ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH------HHHHHhhccCCCEEEEeC
Q 002434 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK------LSIARAVLLNPSILLLDE 472 (922)
Q Consensus 399 ~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR------iaiARAl~~~p~iliLDE 472 (922)
.|+.||+.++. .+++.+.+ .+....||+||+|| ++||||++.+|+++||||
T Consensus 91 ~~~~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 91 LAILENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hhHhhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 49999997752 22322211 45567899999996 799999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeC
Q 002434 473 VTGGLDFEAER-AVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 473 pts~LD~~~~~-~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
||++||+.+.. .+.+.|+++.+ ++|+|++||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999999 99999988765 7899999999998888999999965
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=249.72 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|.++||+|.|+++ ..+++++||-|.+++++|+|||||+|||||++++.|.+.|..|.|.-.-+. .+
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 59999999999743 379999999999999999999999999999999999999999999755432 44
Q ss_pred eEEecCC---CCccccHHHHHhc--CcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEP---ALLSLSIRDNIAY--GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~---~lf~~ti~eNi~~--~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++-.|+- .-+..|..|++.- .+.-..+++...+..+|+......-|- .+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 5555543 3456778888763 333567888899999998766665554 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEE-ecCH
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE-MGTH 528 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~-~G~~ 528 (922)
+.|.+|+|||||++||.++-..+.++|.++ ..++|+|+|+.-.|.+ +++|.+.+||.+.. .|.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999876 4589999999999988 99999999998754 3443
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=1.2e-25 Score=235.50 Aligned_cols=184 Identities=20% Similarity=0.206 Sum_probs=137.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHh-hc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr-~~ 386 (922)
.|+++|.- +|. +..+++++++ ++++|+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47788875 674 4568999987 899999999999999999997 34554432 233 57
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCCC-HHHH-----HHHHHH----HHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDAT-LDQI-----EEAAKI----AHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~~-~~~~-----~~~~~~----~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+++++|+..+++ .|.++++.+..... .+.+ ...... .+-...+..+|++.++.+ ..||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHH
Confidence 999999988775 57777776553211 1100 000000 011113445677776654 47999999999
Q ss_pred HHHHhhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 456 SIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 456 aiARAl~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||+|++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998888899999999888888999999964
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=6.3e-25 Score=266.79 Aligned_cols=199 Identities=24% Similarity=0.384 Sum_probs=167.1
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC--CCCcEEEECCEeCCCCCHHHHhhcceEEecCCC-Cccc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LLSL 399 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~--~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~~ 399 (922)
.+.+|+||+=-++||..+||+|+||||||||+++|+|=-. ..+|+|+|||.+..+ +..++.+|||.|+.. +-..
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4568999999999999999999999999999999997532 246899999988765 678899999999774 5569
Q ss_pred cHHHHHhcCc------CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC-CEE
Q 002434 400 SIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP-SIL 468 (922)
Q Consensus 400 ti~eNi~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p-~il 468 (922)
||||-+.|.. +.+++| ++++.+..++.+. -|..||.-|..||..||.|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999999862 334433 3445544444332 567899999999999999999999999999 889
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch--hhccCEEEEEe-CCeEEEecCHHHH
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL--IRNADYIAVMD-EGRLFEMGTHDEL 531 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~D~i~vl~-~G~i~~~G~~~eL 531 (922)
+|||||||||+++...|++.++++. .|+|+++.-|+++. .+..|+++.|+ .|+.|..|+..+=
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9999999999999999999999875 69999999999864 57899999997 5799999987653
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=5.8e-24 Score=261.85 Aligned_cols=103 Identities=26% Similarity=0.481 Sum_probs=93.4
Q ss_pred cchh-hhcCCCCCCCHHHHHHHHHHHhhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh
Q 002434 435 GYET-QVGRAGLALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR 509 (922)
Q Consensus 435 g~~t-~vge~G~~LSGGqkQRiaiARAl~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~ 509 (922)
|++. .++.....||||||||++|||||+++| +++||||||++||+.+...+.+.|+++. +|+|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 367888999999999999999999999 9999999999999999999999998875 5889999999999999
Q ss_pred ccCEEEEE------eCCeEEEecCHHHHhhcCcH
Q 002434 510 NADYIAVM------DEGRLFEMGTHDELLATGDL 537 (922)
Q Consensus 510 ~~D~i~vl------~~G~i~~~G~~~eL~~~~~~ 537 (922)
.||+|++| ++|+|++.|+++++.+....
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s 931 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCccc
Confidence 99999999 79999999999999876543
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=1.8e-23 Score=266.92 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=153.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHH---------HHhcCCCCCCc----E----EEE
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP---------LMERFYDPTLG----E----VLL 370 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~---------ll~g~~~~~~G----~----I~i 370 (922)
.++++|++. ..|+|+||+|++|++++|.|+||||||||++ .|.|...+..+ . |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 477887752 2699999999999999999999999999999 55554332111 1 344
Q ss_pred CCEeCCCCCH----------HHHh---------hcce-----EEecC------------------C--------------
Q 002434 371 DGENIKNLKL----------EWLR---------SQIG-----LVTQE------------------P-------------- 394 (922)
Q Consensus 371 ~g~~i~~~~~----------~~lr---------~~i~-----~v~Q~------------------~-------------- 394 (922)
|-.++..-+. +.+| ++.+ +.++. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5444432111 1233 1111 22221 1
Q ss_pred ------CCcc-ccHHHHHhcCcC-C-----CHHHHHHHHHHHHHHHhHHHhhccchhh-hcCCCCCCCHHHHHHHHHHHh
Q 002434 395 ------ALLS-LSIRDNIAYGRD-A-----TLDQIEEAAKIAHAHTFISSLEKGYETQ-VGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 395 ------~lf~-~ti~eNi~~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~-vge~G~~LSGGqkQRiaiARA 460 (922)
..+. .||.||+.++.. + +.+++.+.++ .+.. -|++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1232 588999988741 1 1222322221 2222 266654 688889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEe------CCeEEEecCHHH
Q 002434 461 VL---LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMD------EGRLFEMGTHDE 530 (922)
Q Consensus 461 l~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~------~G~i~~~G~~~e 530 (922)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 5889999999999998899999996 799999999999
Q ss_pred Hhhc
Q 002434 531 LLAT 534 (922)
Q Consensus 531 L~~~ 534 (922)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9864
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=225.05 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=174.2
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeC-CCCCHHHHhh
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI-KNLKLEWLRS 385 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i-~~~~~~~lr~ 385 (922)
.-++++|++..-. .+.+.+++|||++++||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ...++..+|+
T Consensus 256 ~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3489999998642 235789999999999999999999999999999999999999999999999997 6677777654
Q ss_pred -cceEEecCCC----CccccHHHHHhcCcCC----------CHHHHHHHHHHHHHHHhHHHh---hccchhhhcCCCCCC
Q 002434 386 -QIGLVTQEPA----LLSLSIRDNIAYGRDA----------TLDQIEEAAKIAHAHTFISSL---EKGYETQVGRAGLAL 447 (922)
Q Consensus 386 -~i~~v~Q~~~----lf~~ti~eNi~~~~~~----------~~~~~~~~~~~~~l~~~i~~l---~~g~~t~vge~G~~L 447 (922)
.++|||.|.+ ....|+.||+.++... +..++.+.++. .++.+ +.+.++ ...+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~----~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDA----PARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCc----chhhc
Confidence 6999999984 4578999999987621 22333332222 22222 233333 34689
Q ss_pred CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCcchhhc-cCEEEEEeCCeEEEe
Q 002434 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525 (922)
Q Consensus 448 SGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~ 525 (922)
|||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+. .+|+.+++|+-+|+.+-. ||||.||.+|+|+..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 999999999999999999999999999999999999998888665 468999999999988755 999999999999988
Q ss_pred cCHHH
Q 002434 526 GTHDE 530 (922)
Q Consensus 526 G~~~e 530 (922)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 77665
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.1e-23 Score=226.37 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=132.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe-C-C-----CCCHHHHhhcceEEecCCC--CccccHHHHHh-c
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN-I-K-----NLKLEWLRSQIGLVTQEPA--LLSLSIRDNIA-Y 407 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~-i-~-----~~~~~~lr~~i~~v~Q~~~--lf~~ti~eNi~-~ 407 (922)
..++|+||||||||||+.+|.+++.+..|++..++.+ + . ..+.....-.+.+..|++. ++..+++++-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888887655421 1 1 1111222334555555533 33444444321 1
Q ss_pred ---CcCCCHHHHHHHHHHHHHHHhHHH--hhccchhhhcCC---------CCCCCHHHHHHHHHHHhhccC----CCEEE
Q 002434 408 ---GRDATLDQIEEAAKIAHAHTFISS--LEKGYETQVGRA---------GLALTEEQKIKLSIARAVLLN----PSILL 469 (922)
Q Consensus 408 ---~~~~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~vge~---------G~~LSGGqkQRiaiARAl~~~----p~ili 469 (922)
+...+.+++.+.++.++++.+... +++|.-+.+.+. ..+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 235678888888888887533221 234443444332 278999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhccCEEEEEeC
Q 002434 470 LDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||++++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 7899999999999989999999864
No 388
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.89 E-value=2.2e-20 Score=199.78 Aligned_cols=221 Identities=23% Similarity=0.286 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (922)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~ 122 (922)
.........+...+.+.++..++|+++++|++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~ 132 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS 132 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhh
Confidence 33344444455568899999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHH
Q 002434 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (922)
Q Consensus 123 li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~~~~~~~ 202 (922)
+++++.++|++++++++..|+..++.....++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++
T Consensus 133 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 212 (275)
T PF00664_consen 133 LILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEK 212 (275)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHH
Q 002434 203 TLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFL-VTHNKAHGGEIVTALFAVILSGLGL 264 (922)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~lt~g~l~~~~~~~~~~~~~l 264 (922)
..+...+.....++...+...+..+..++++++|+++ +.+|.+++|.+++++.+......|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 213 YRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999988888888888888888888999999999 9999999999998887776665553
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=222.84 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=145.5
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
...+.++|++++|. ..++++|+.|++.+|+++||+|+|||||||++++|.|-..|..=++-+--.+ +++.+..+.
T Consensus 73 s~dvk~~sls~s~~---g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~- 147 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH---GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ- 147 (614)
T ss_pred cccceeeeeeeccC---CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-
Confidence 34699999999995 4579999999999999999999999999999999999888865544221000 011111000
Q ss_pred cceEEecCCCCccccHH-------HHHhcC-cCCCHHHHH---HHHHHHHHHHh---HHH-h-hccc-hhhhcCCCCCCC
Q 002434 386 QIGLVTQEPALLSLSIR-------DNIAYG-RDATLDQIE---EAAKIAHAHTF---ISS-L-EKGY-ETQVGRAGLALT 448 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~-------eNi~~~-~~~~~~~~~---~~~~~~~l~~~---i~~-l-~~g~-~t~vge~G~~LS 448 (922)
.+-+|. .+...-+ |++.-. .+...++.. +-+...+.+.+ +.. | ..|. .......-.+||
T Consensus 148 av~~v~----~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 148 AVQAVV----METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred HHHHHh----hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 000000 0111111 111111 011111111 11111111110 000 1 0122 222334557899
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCe-EEEec
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR-LFEMG 526 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~-i~~~G 526 (922)
||||.|++|||||+.+|++|+|||||.+||.++..-+.+.|.+.... |.|+++|.-+++.. |..|+-|++++ +...|
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999999999999999776433 89999999999988 99999999999 77899
Q ss_pred CHHHHhhc
Q 002434 527 THDELLAT 534 (922)
Q Consensus 527 ~~~eL~~~ 534 (922)
++++.+..
T Consensus 303 nydqy~~t 310 (614)
T KOG0927|consen 303 NYDQYVKT 310 (614)
T ss_pred CHHHHhhH
Confidence 99998754
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=1.1e-21 Score=241.33 Aligned_cols=97 Identities=27% Similarity=0.527 Sum_probs=88.8
Q ss_pred cchh-hhcCCCCCCCHHHHHHHHHHHhhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh
Q 002434 435 GYET-QVGRAGLALTEEQKIKLSIARAVLL---NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR 509 (922)
Q Consensus 435 g~~t-~vge~G~~LSGGqkQRiaiARAl~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~ 509 (922)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. +++|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3688889999999999999999997 599999999999999999999999998875 5889999999999999
Q ss_pred ccCEEEEE------eCCeEEEecCHHHH
Q 002434 510 NADYIAVM------DEGRLFEMGTHDEL 531 (922)
Q Consensus 510 ~~D~i~vl------~~G~i~~~G~~~eL 531 (922)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.8e-22 Score=219.66 Aligned_cols=210 Identities=22% Similarity=0.270 Sum_probs=168.0
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
+..+++.+|+|.|+... .+.+.++++.++.-+++++||++|+||||+++++.+...|..|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 34699999999997432 2789999999999999999999999999999999999999999998887 55
Q ss_pred cceEEecCCCC-ccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 386 QIGLVTQEPAL-LSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 386 ~i~~v~Q~~~l-f~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+|+|-.|.-.= ++..+-.--.+.. ..+++++++.|...|+...+..-+ -..||||||-|+++|-+.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 89999996542 3332221111111 238899999888877655444322 146999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEEE-ecCHHHHhhcCcHHH
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE-MGTHDELLATGDLYA 539 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~-~G~~~eL~~~~~~~~ 539 (922)
..+|.+|+|||||..||.++-..+-++|+.+. .-||+|||+.+.++. |+.+++.++|+|.. .|+. ..|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~-------~~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI-------DKYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH-------HHHH
Confidence 99999999999999999999999999998774 469999999999988 99999999999975 2222 2466
Q ss_pred HHHHhHH
Q 002434 540 ELLKCEE 546 (922)
Q Consensus 540 ~l~~~~~ 546 (922)
++...+.
T Consensus 569 kl~~~e~ 575 (582)
T KOG0062|consen 569 KLLGAEL 575 (582)
T ss_pred HHHHHHH
Confidence 6665553
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=1.5e-21 Score=202.51 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=118.1
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE---eCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE---NIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~---~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
++++++++.+| +.+|+||||||||||+..|.-.+....+ ....|. ++-... .-...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----
Confidence 46777888887 7799999999999999998743322211 011122 111111 11345778888776555
Q ss_pred HHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh----ccCCCEEEEeCCCCCCCH
Q 002434 404 NIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV----LLNPSILLLDEVTGGLDF 479 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl----~~~p~iliLDEpts~LD~ 479 (922)
| .....+ ...+.+++.. . ....+...+||||||||++||||+ +.+|+++||||||++||.
T Consensus 83 ~-----~~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-----PLCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-----cCCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 111111 1222333333 1 223445678999999999999999 689999999999999999
Q ss_pred HHHHHHHHHHHHHcC----CCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 480 EAERAVQEALDLLML----GRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 480 ~~~~~i~~~l~~~~~----~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
.+...+.+.|++..+ ++|+|++||+++.+..+|+|-+|..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999887642 357888889999999999999998753
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.4e-21 Score=209.42 Aligned_cols=187 Identities=24% Similarity=0.346 Sum_probs=147.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-+-+.||+|.||+ ..|.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+=+. |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4778999999984 46899999999999999999999999999999999999999999886543 3478
Q ss_pred eEEecCCC--Cc-cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 388 GLVTQEPA--LL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 388 ~~v~Q~~~--lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
|+.-|... |- .-|-.|.+.-+-+.+.++.+..+-..|+.... +|. .-..||||||.|+++|---++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCC
Confidence 98888753 32 35667776644455555555655555543221 111 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccC-EEEEEeC
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNAD-YIAVMDE 519 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D-~i~vl~~ 519 (922)
|+||||||||.+||.++-..+-++|.+.. ..||+|||+-..+...| ..+|+++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEcc
Confidence 99999999999999999999999998873 46999999988876633 3444444
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.8e-22 Score=220.86 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=138.9
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe--CCCCCHHHH
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN--IKNLKLEWL 383 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~--i~~~~~~~l 383 (922)
..+|..++++.+|. ++..|++-++++..|.++++||+||+|||||+++|.. |.|..-.++ ++.....
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~-- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE-- 146 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH--
Confidence 45799999999995 4579999999999999999999999999999999987 444322211 1111100
Q ss_pred hhcceEEecCCCCccccHHHHHhcCc-----CCCHHHHHH-HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 384 RSQIGLVTQEPALLSLSIRDNIAYGR-----DATLDQIEE-AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~~ti~eNi~~~~-----~~~~~~~~~-~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
..|+ .+-.++-+.-+..-. ..+.+++.. +++-.|..+.....|- ..||||=|-|++|
T Consensus 147 ------~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 147 ------ALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred ------HHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 0010 111222222222111 002233322 3333333333333332 4799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeE-EEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRL-FEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i-~~~G~~~eL~~~ 534 (922)
||||..+||||||||||..||..+-.-+.+.|..+. .|+|+|+|+-.++.. |.-|+.+++=|+ ...|++++..+.
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999999997764 899999999999987 888998888665 356676666543
No 395
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.5e-20 Score=186.68 Aligned_cols=220 Identities=23% Similarity=0.267 Sum_probs=170.6
Q ss_pred EEEeEEEEeCC-CCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC----CCcEEEECCEeCCCCCHHHHh
Q 002434 310 EFRNVYFSYLS-RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 310 ~~~~v~f~y~~-~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~----~~G~I~i~g~~i~~~~~~~lr 384 (922)
.++|++..+.. .+...+.+++|+++..||+-++||+||||||-+.+.|+|..+- +.-+..+|++|+-.++++..|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 34555554432 2235689999999999999999999999999999999998752 344567889999999999888
Q ss_pred hc----ceEEecCCCCc-c--ccH----HHHHhcC----c-----CCCHHHHHHHHHHHHHHH--hHH-Hhhccchhhhc
Q 002434 385 SQ----IGLVTQEPALL-S--LSI----RDNIAYG----R-----DATLDQIEEAAKIAHAHT--FIS-SLEKGYETQVG 441 (922)
Q Consensus 385 ~~----i~~v~Q~~~lf-~--~ti----~eNi~~~----~-----~~~~~~~~~~~~~~~l~~--~i~-~l~~g~~t~vg 441 (922)
+- |+.++|+|.-. + .+| -+||-.. + ...+.+..+.+.++|+.+ +|. +.|.
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~------- 157 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY------- 157 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc-------
Confidence 64 67999999743 2 333 4555321 1 123455566777777633 332 3332
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
.|-.|+-|++.||-|+..+|++||-||||.++|+.|+.+|...+.++. ++.|+++++|++..+.. ||+|-||-
T Consensus 158 ----ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 158 ----ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred ----hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 466688999999999999999999999999999999999999998775 46788899999999876 99999999
Q ss_pred CCeEEEecCHHHHhhcC-cHHHH
Q 002434 519 EGRLFEMGTHDELLATG-DLYAE 540 (922)
Q Consensus 519 ~G~i~~~G~~~eL~~~~-~~~~~ 540 (922)
=|+-+|++..+++++.. ..|.+
T Consensus 234 CGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 234 CGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred ecccccccchhHHhcCCCCchHH
Confidence 99999999999999863 34544
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=2.9e-20 Score=203.52 Aligned_cols=168 Identities=20% Similarity=0.304 Sum_probs=132.7
Q ss_pred cccceeEEec-----CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC-Cccc
Q 002434 326 ILSGFYLTVP-----AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA-LLSL 399 (922)
Q Consensus 326 vL~~isl~i~-----~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~~ 399 (922)
.+.++.|+++ .||+++++||||-||||++++|+|.++|++|+ ..++ +|+|=||-.. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCC
Confidence 4557777665 56889999999999999999999999999998 2221 6889999543 3889
Q ss_pred cHHHHHhcCcC--CCHHHHH-HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCC
Q 002434 400 SIRDNIAYGRD--ATLDQIE-EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (922)
Q Consensus 400 ti~eNi~~~~~--~~~~~~~-~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~ 476 (922)
||++-+.-... +....++ +.++ |-.++..+...-.+||||+-||+|||-||.+++|+++||||++.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99997754321 2221111 1222 33444455555678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe
Q 002434 477 LDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 477 LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
||.+.+-.+-++|++.. .++|.++|-|++-.+.. +||++|++
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999998874 57899999999999987 99999986
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=3.6e-20 Score=188.85 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=77.4
Q ss_pred HHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEec
Q 002434 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIAR 503 (922)
Q Consensus 429 i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH 503 (922)
+..+|+|..|++ ||||||||++|||++. .+|+++|+||||++||+.....+.+.+.++.+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456799988888 9999999999999985 79999999999999999999999999988754 589999999
Q ss_pred CcchhhccCEEEEEeC
Q 002434 504 RLSLIRNADYIAVMDE 519 (922)
Q Consensus 504 ~l~~~~~~D~i~vl~~ 519 (922)
+.+.+..+|+++.+.+
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.3e-19 Score=221.00 Aligned_cols=206 Identities=20% Similarity=0.322 Sum_probs=170.5
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 398 (922)
...+|+|++.-++||+.+.+.||.|||||||+++|+|-.+-. .|+|..||++.++... ++.++|++|+...|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 346999999999999999999999999999999999976542 5699999999998877 788999999988885
Q ss_pred ccHHHHHhcCc-------CCC---HHHHHHHHHHHHHHHhHHHhhccchhhhcCC-CCCCCHHHHHHHHHHHhhccCCCE
Q 002434 399 LSIRDNIAYGR-------DAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRA-GLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 399 ~ti~eNi~~~~-------~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~-G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
.||||-|.|.. .++ +.+... ......-.+-.|....||.||.+ ....|||||.|+++|-+++.+|++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~--~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLA--AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHH--HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 89999999852 122 222221 11222223446778899999965 467999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCc--chhhccCEEEEEeCCeEEEecCHHHHhh
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRL--SLIRNADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l--~~~~~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+.+||+|.|||+.|.-++.++|+++.+ +.|.++.-|+. ++....|.|++|.+|+++.+|+.++.+.
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999999998754 56666666775 4567799999999999999999999864
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=2.3e-19 Score=186.82 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=109.5
Q ss_pred ccceeEEecCCC-EEEEeCCCCCcHHHHHHHHh--------cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc
Q 002434 327 LSGFYLTVPAKK-AVALVGRNGSGKSSIIPLME--------RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397 (922)
Q Consensus 327 L~~isl~i~~G~-~vaivG~sGsGKSTl~~ll~--------g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf 397 (922)
..++||++++|+ +++|+||||||||||++.|. |.+-|....+ .++|+.|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457999999996 69999999999999999998 6555542211 244444432111
Q ss_pred cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Q 002434 398 SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (922)
Q Consensus 398 ~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L 477 (922)
. .+..+.++-..+|+|+||+..|++++ .+|+++++||||+++
T Consensus 80 g-------------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 1 01112223357899999999999985 899999999999999
Q ss_pred CHHHHHHHH-HHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 478 DFEAERAVQ-EALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 478 D~~~~~~i~-~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
|+.....+. ..++.+. .+.|+|++||+.+..+.||++++|++|++...
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 999988885 4566654 47899999999776777999999999999865
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.2e-18 Score=173.10 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=155.4
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC-CCH----
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN-LKL---- 380 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~-~~~---- 380 (922)
+..|++.++.|+|+.. .|++-|+|++++.|....+||.||||||||+++|.|-.-...|.|.+.|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999753 489999999999999999999999999999999999887778999999975422 111
Q ss_pred ------HHHhhcceEEecCCCCc-cccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 381 ------EWLRSQIGLVTQEPALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ------~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.+|++..++-- +..|. .-++ +.+.+|- ..+.++-++..+ =+|-.+.-+-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~g~dp~Rre~LI~-------------iLDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVGGDDPERREKLID-------------ILDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccc-cccccccccH-HHHHhhccCCChhHhhhhhh-------------heeccceEEEeeccccch
Confidence 12233332222 22222 1233 3333332 112222111111 134444456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~ 529 (922)
+|+.|+..|++.=++|+|||-|--||...+..+.+.+++.. ++.|+|..||-.+-++. +.+++.|.+|+++..-.++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999999997754 58899999999887766 9999999999999865555
Q ss_pred HHh
Q 002434 530 ELL 532 (922)
Q Consensus 530 eL~ 532 (922)
+..
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 443
No 401
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.78 E-value=3.5e-19 Score=190.07 Aligned_cols=198 Identities=16% Similarity=0.183 Sum_probs=141.8
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE--EECCEeCCCCCHHHHhhcc--eEEecCCCCccccHHHHHhc
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV--LLDGENIKNLKLEWLRSQI--GLVTQEPALLSLSIRDNIAY 407 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I--~i~g~~i~~~~~~~lr~~i--~~v~Q~~~lf~~ti~eNi~~ 407 (922)
+.+.+||+++|+||+|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ .+|-.+.. .+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHHHH
Confidence 5788999999999999999999999999888764433 3222222224555555554 11111110 011111111
Q ss_pred CcCCCHHHHHHHHHHH---H-----HHHhHHHhhccchhhhcCCCCCCCHHH--------HHHHHHHHhhccCCCEEEEe
Q 002434 408 GRDATLDQIEEAAKIA---H-----AHTFISSLEKGYETQVGRAGLALTEEQ--------KIKLSIARAVLLNPSILLLD 471 (922)
Q Consensus 408 ~~~~~~~~~~~~~~~~---~-----l~~~i~~l~~g~~t~vge~G~~LSGGq--------kQRiaiARAl~~~p~iliLD 471 (922)
. ....+.++.. | +-|.+.++++++++.+++.|..+|||| +||+++||+++++++|.+|
T Consensus 88 ~-----~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 A-----EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred H-----HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 0 0111111111 1 345688999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 472 EVTGGLDFEAERA-VQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 472 Epts~LD~~~~~~-i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
||+.+|+.++.. ++ +..+. .++|.|+++|++++..++|.|.||++|++ |++++..++.|..++..+.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r~ 230 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLRR 230 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHHH
Confidence 999999766654 43 44444 57899999999999999999999999997 7889888888888766554
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-18 Score=190.36 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHhhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 446 ALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.++++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997654 9999999999999999999999999998877889999999999888899999999874
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=1.3e-18 Score=182.47 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=111.4
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hh-----cceEEecCCCCcccc
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RS-----QIGLVTQEPALLSLS 400 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~-----~i~~v~Q~~~lf~~t 400 (922)
++++.+++.+| ..+|+|+||||||||+.+|.-.+-..... .+ +.-...++ +. .|-...+.. ...
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~ 83 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEFVKRGCDEGTIEIELYGN---PGN 83 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHHhhCCCCcEEEEEEEEeC---CCc
Confidence 35566666555 66899999999999999886544211110 00 00011111 11 111111110 000
Q ss_pred -HHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh----hccCCCEEEEeCCCC
Q 002434 401 -IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA----VLLNPSILLLDEVTG 475 (922)
Q Consensus 401 -i~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA----l~~~p~iliLDEpts 475 (922)
..+|+.+ ..+.+...+++..... +.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||+
T Consensus 84 ~~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 84 IQVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred cccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 1233321 1234444455444433 3445666655432 45678999999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--C-CeEEEEecCcchh-hccC--EEEEEeCCe
Q 002434 476 GLDFEAERAVQEALDLLML--G-RSTIIIARRLSLI-RNAD--YIAVMDEGR 521 (922)
Q Consensus 476 ~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~l~~~-~~~D--~i~vl~~G~ 521 (922)
+||+.+...+.+.+.+..+ + .|+|++||++... ..|| +|+++++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988753 3 4799999997544 4455 788888876
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.1e-17 Score=194.81 Aligned_cols=100 Identities=26% Similarity=0.495 Sum_probs=91.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEE
Q 002434 440 VGRAGLALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 440 vge~G~~LSGGqkQRiaiARAl~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~ 515 (922)
+|+....|||||.|||-||.-|.+.. -++||||||.+|-.+--+++++.|.++. +|.|||+|-|.|+.++.||.|+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 68899999999999999999999988 8999999999999999999999998774 6999999999999999999999
Q ss_pred EE------eCCeEEEecCHHHHhhcCcHHH
Q 002434 516 VM------DEGRLFEMGTHDELLATGDLYA 539 (922)
Q Consensus 516 vl------~~G~i~~~G~~~eL~~~~~~~~ 539 (922)
=| +.|+|+++|||+|+.+..+.|.
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~~~~S~T 925 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAKVKASYT 925 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHhCccchh
Confidence 98 4789999999999997655443
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=2.6e-18 Score=188.38 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=132.4
Q ss_pred eEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEE-----------ECCEeCCCCCHH
Q 002434 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-----------LDGENIKNLKLE 381 (922)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~-----------i~g~~i~~~~~~ 381 (922)
++..+|..+ ...|..+- +.++|+.++|+|+||-||||.+++|+|.+.|.-|+-- +.|..+.++=.+
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 467788532 22333332 3478999999999999999999999999999988531 111111111000
Q ss_pred HH----h--hcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 382 WL----R--SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 382 ~l----r--~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
-. | .++-||.-=|-.+.|+++|-+.--. +.-..++.++.| +++..+...-.+||||+-||+
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d-----------e~g~~devve~l--~L~nvl~r~v~~LSGGELQr~ 222 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD-----------ERGKFDEVVERL--GLENVLDRDVSELSGGELQRV 222 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhh-----------hcCcHHHHHHHh--cchhhhhhhhhhcCchHHHHH
Confidence 00 0 1123333345556666666553211 111223334443 455556666778999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhc-cCEEEEEe
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
|||-|++++++++++|||||-||...+-...+.|+++.+ +++||+|-|+|..+.. +|-|.++-
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999877 7999999999999987 89888774
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.75 E-value=7.9e-18 Score=182.39 Aligned_cols=199 Identities=24% Similarity=0.379 Sum_probs=150.3
Q ss_pred CCcccEEEEeEEEEeCCCC-----------------------CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 304 SVHGNIEFRNVYFSYLSRP-----------------------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 304 ~~~g~i~~~~v~f~y~~~~-----------------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+..+.+.|++++..|.+.- ...+|+|+||+|+||+.++|+|+|||||||++++|+|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 4456688999988774311 23679999999999999999999999999999999974
Q ss_pred --------CCCCCcEEEECCEeCCCCCHHHHhhcceEEec--CCCCccccHHHHHhcCcCC-CHHHHHHHHHHHHHHHhH
Q 002434 361 --------YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHAHTFI 429 (922)
Q Consensus 361 --------~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q--~~~lf~~ti~eNi~~~~~~-~~~~~~~~~~~~~l~~~i 429 (922)
|.|++|.|.+--..+. +.+|- ||.+=.-||.|.+. ... +..--.++++.+++.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~--s~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHh--hccCchhHHHHHHHhhccchhh
Confidence 6799999876432111 23333 33333457777653 222 222345667777776543
Q ss_pred HHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcch
Q 002434 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSL 507 (922)
Q Consensus 430 ~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~ 507 (922)
. |. ..-..||-|||-|..||+++...|.+++.||.-|.||+.|...+...|.++. .+.|.++||||.+.
T Consensus 500 l-----yR----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 L-----YR----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred h-----hh----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 2 11 1224699999999999999999999999999999999999999999998876 58899999999998
Q ss_pred hhc--cCEEEEEeCCeEEE
Q 002434 508 IRN--ADYIAVMDEGRLFE 524 (922)
Q Consensus 508 ~~~--~D~i~vl~~G~i~~ 524 (922)
+.. -|+++.+.=|++..
T Consensus 571 ~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 571 GNALRPDTLILVGYGKVPV 589 (593)
T ss_pred HhccCCceeEEeecccccc
Confidence 876 69999988776543
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.1e-16 Score=186.19 Aligned_cols=188 Identities=24% Similarity=0.362 Sum_probs=162.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (922)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~ 794 (922)
.+++++.+.+|+|+++..|.+..++........=...+++++..+..+ ...+.....+....++-++..++++++.+
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~---~~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD---DSADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999888777766665555445556777777776611 11333445667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (922)
Q Consensus 795 ~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w 874 (922)
+|.+++++...++|..+|++++||+++||| +|.+|.|++|+++|++.+...++..+...+.++++.++++...++++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 002434 875 RLALVALATLPILSLSAIAQVCTVTMLSDAILC 907 (922)
Q Consensus 875 ~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~~~~ 907 (922)
+|+++.+..+|++++...+.-+...+.+.....
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~ 321 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQD 321 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877765443
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=3e-17 Score=210.58 Aligned_cols=209 Identities=25% Similarity=0.330 Sum_probs=142.4
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHh------cC---CCCCCcEEEECCEeCCCCCH----------HHHhhc
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME------RF---YDPTLGEVLLDGENIKNLKL----------EWLRSQ 386 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~------g~---~~~~~G~I~i~g~~i~~~~~----------~~lr~~ 386 (922)
=|+|++++||-|..++|.|.||||||||++=.+ .+ .+..+--|.||-.+|..-+. +.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 399999999999999999999999999997544 11 12223446777766654431 223443
Q ss_pred ceEEec------CCCCc--c------------ccHHHHHhc------------CcCCCHH-----------------HHH
Q 002434 387 IGLVTQ------EPALL--S------------LSIRDNIAY------------GRDATLD-----------------QIE 417 (922)
Q Consensus 387 i~~v~Q------~~~lf--~------------~ti~eNi~~------------~~~~~~~-----------------~~~ 417 (922)
.+-.|+ .+..| | |.+.=++.| |+.+.++ .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332221 11112 1 011111111 1111111 112
Q ss_pred HHHHHH----HHHHhHHH---hhccchhhhcCCCCCCCHHHHHHHHHHHhhccC---CCEEEEeCCCCCCCHHHHHHHHH
Q 002434 418 EAAKIA----HAHTFISS---LEKGYETQVGRAGLALTEEQKIKLSIARAVLLN---PSILLLDEVTGGLDFEAERAVQE 487 (922)
Q Consensus 418 ~~~~~~----~l~~~i~~---l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~---p~iliLDEpts~LD~~~~~~i~~ 487 (922)
+|++.. .+...+.. +--||-+ +|+....|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 222221 12222222 2224433 6899999999999999999999876 78999999999999999999999
Q ss_pred HHHHH-cCCCeEEEEecCcchhhccCEEEEEe------CCeEEEecCHHHHhhcC
Q 002434 488 ALDLL-MLGRSTIIIARRLSLIRNADYIAVMD------EGRLFEMGTHDELLATG 535 (922)
Q Consensus 488 ~l~~~-~~~~t~i~itH~l~~~~~~D~i~vl~------~G~i~~~G~~~eL~~~~ 535 (922)
.++++ ..|.|+|+|.|+++.++.||.|+-|. .|+|+.+||++|+.+..
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 99887 46899999999999999999999994 68999999999998754
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=4e-17 Score=164.18 Aligned_cols=136 Identities=26% Similarity=0.298 Sum_probs=99.3
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce-EEecCCCCccccHHHHHhcC
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSIRDNIAYG 408 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~lf~~ti~eNi~~~ 408 (922)
.++.+.++..+.|+|||||||||+++.+.-..-..+|.+.-.. +. +.+ .+++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3444555679999999999999999997654444444443211 00 111 122221111
Q ss_pred cCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc----CCCEEEEeCCCCCCCHHHHHH
Q 002434 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERA 484 (922)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~----~p~iliLDEpts~LD~~~~~~ 484 (922)
+ -+. .+||+||+||++|||++.. +|+++|||||++++|+.....
T Consensus 72 --------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 000 1199999999999999986 789999999999999999999
Q ss_pred HHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeC
Q 002434 485 VQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 485 i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
+.+.+.+.. ++.|+|++||+.+....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999887764 36899999999999999999999964
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=4.3e-17 Score=172.07 Aligned_cols=153 Identities=20% Similarity=0.113 Sum_probs=112.2
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce-EEecCCCCccccH
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSI 401 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~lf~~ti 401 (922)
...+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| |||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3468999999999999999999999999999999871 13345666 7777653222 1
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh--ccCCCEEEEeCC---CCC
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV--LLNPSILLLDEV---TGG 476 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl--~~~p~iliLDEp---ts~ 476 (922)
.+.| ....++.+. ...++|.|++|+..+++++ +.+|+++||||| |++
T Consensus 73 ~~~i--------------l~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 73 VDCI--------------LARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred ccee--------------Eeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 1111 111111111 1246999999999999999 899999999999 999
Q ss_pred CCHHHHHHHH-HHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecC
Q 002434 477 LDFEAERAVQ-EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 477 LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~ 527 (922)
+|+....... +.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9998665432 44433 24789999999755556699999999999987654
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.6e-16 Score=171.48 Aligned_cols=190 Identities=18% Similarity=0.160 Sum_probs=119.1
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC---------------------------------------Cc-
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---------------------------------------LG- 366 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~---------------------------------------~G- 366 (922)
+++.++++.+| ..+|+|||||||||++.+|.-+.... +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 45667777776 68899999999999998875332110 11
Q ss_pred -EEEECCEeCCCCCHHHH---hhcceEEecCCCCccccHHHHHhcCcC---CCHHHHHHHHHHH-HHHHhHHH---hhcc
Q 002434 367 -EVLLDGENIKNLKLEWL---RSQIGLVTQEPALLSLSIRDNIAYGRD---ATLDQIEEAAKIA-HAHTFISS---LEKG 435 (922)
Q Consensus 367 -~I~i~g~~i~~~~~~~l---r~~i~~v~Q~~~lf~~ti~eNi~~~~~---~~~~~~~~~~~~~-~l~~~i~~---l~~g 435 (922)
.+.+||..+.. ..++ -..|.+.|++..|+.++-.+-..|-+. ..+.++.++.+.. .+..-... -|+.
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 168 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHR 168 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 34456655544 2333 234566666677775544333333220 1112222221111 11111122 2444
Q ss_pred chhhhcCCC----CCCCHHHHHHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 002434 436 YETQVGRAG----LALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (922)
Q Consensus 436 ~~t~vge~G----~~LSGGqkQRiaiARAl~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 502 (922)
.+..+.-++ ..+|+||||+++|||++. ++|+++||||||++||+.....+.+.+++.. .+++++
T Consensus 169 d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~ 245 (270)
T cd03242 169 DDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTT 245 (270)
T ss_pred hheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEe
Confidence 444433333 348999999999999974 7999999999999999999999999987652 466666
Q ss_pred cCcchhhc-c---CEEEEEeCCeE
Q 002434 503 RRLSLIRN-A---DYIAVMDEGRL 522 (922)
Q Consensus 503 H~l~~~~~-~---D~i~vl~~G~i 522 (922)
|+...+.. | ++|+.+++|+|
T Consensus 246 ~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 246 TDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CCchhccchhccCccEEEEeCcEE
Confidence 66655544 4 78999999986
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.64 E-value=5.3e-16 Score=161.10 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=98.5
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIR 402 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~ 402 (922)
.+|++|++++. |++++|+||||||||||+++|.+... +..+|.++... .++.|...+| ..|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46788887765 79999999999999999999976432 12356555321 3566755566 58999
Q ss_pred HHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHH
Q 002434 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (922)
Q Consensus 403 eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~ 482 (922)
||+.++.....++..+ +.+.++.+. .++|+++|+||||+++|+...
T Consensus 78 d~l~~~~s~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGISYFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hccccccChHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998876432333222 122222211 179999999999999999987
Q ss_pred HHHHH-HHHHHc-CCCeEEEEecCcchhhc---cCEEEEE
Q 002434 483 RAVQE-ALDLLM-LGRSTIIIARRLSLIRN---ADYIAVM 517 (922)
Q Consensus 483 ~~i~~-~l~~~~-~~~t~i~itH~l~~~~~---~D~i~vl 517 (922)
..+.. .++.+. .+.|+|++||+++.+.. .++|-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 76644 455543 47899999999887654 4455443
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.2e-15 Score=188.28 Aligned_cols=100 Identities=26% Similarity=0.406 Sum_probs=90.4
Q ss_pred cchhh-hcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc
Q 002434 435 GYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (922)
Q Consensus 435 g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 510 (922)
|++.. .+....+|||||+|||+|||||..+| ++|||||||++||+.....+.+.|+++. +|+|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45433 57778899999999999999999986 8999999999999999999999998875 48899999999999999
Q ss_pred cCEEEEE------eCCeEEEecCHHHHhhc
Q 002434 511 ADYIAVM------DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 511 ~D~i~vl------~~G~i~~~G~~~eL~~~ 534 (922)
||+|++| ++|+|+++|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998643
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.63 E-value=7.9e-16 Score=160.52 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=102.0
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhc-CCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcC
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG 408 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g-~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~ 408 (922)
.++++.+|++++|+|||||||||++++|.+ .+.+..|...-. .+..+++..|....|. ..+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~--~~d~i--- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIG--AEDSI--- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEec--Ccccc---
Confidence 445556899999999999999999999983 222222221100 0123444333222111 11111
Q ss_pred cCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 002434 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488 (922)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~ 488 (922)
.++-..++++++| +..+.+...+|+++||||||+++|+.....+...
T Consensus 86 --------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 86 --------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred --------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 1112334555554 6666778889999999999999999877766543
Q ss_pred -HHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHH
Q 002434 489 -LDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 489 -l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~e 530 (922)
++.+. .+.++|++||+.+.++.+|++..+++|++.++++..+
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 44443 4789999999999999999999999999998876533
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=1.3e-15 Score=188.49 Aligned_cols=100 Identities=25% Similarity=0.399 Sum_probs=90.7
Q ss_pred cchhh-hcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc
Q 002434 435 GYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (922)
Q Consensus 435 g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 510 (922)
|++.. .+....+|||||||||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 56777899999999999999999997 9999999999999999999999998875 48999999999999999
Q ss_pred cCEEEEE------eCCeEEEecCHHHHhhc
Q 002434 511 ADYIAVM------DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 511 ~D~i~vl------~~G~i~~~G~~~eL~~~ 534 (922)
||+|++| ++|+|+.+|+++++...
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998654
No 416
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.60 E-value=7.7e-16 Score=141.81 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999998 99999999
Q ss_pred HHhc
Q 002434 404 NIAY 407 (922)
Q Consensus 404 Ni~~ 407 (922)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=6.1e-15 Score=159.29 Aligned_cols=142 Identities=17% Similarity=0.288 Sum_probs=105.8
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC-HHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHH
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQI 416 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~-~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 416 (922)
+.++|+||+|||||||++.|+|++.|.+|+|.++|.++..++ ..++...++++||...--..++.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~---------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP---------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch----------
Confidence 678999999999999999999999999999999999998765 567778889999965322345555410
Q ss_pred HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 002434 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR 496 (922)
Q Consensus 417 ~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 496 (922)
+..+ ...++|+ .+|+++|+|||++ ...+...++.+..|.
T Consensus 182 ----k~~~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 182 ----KAEG-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred ----HHHH-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 0001 1445555 4999999999974 233444455555799
Q ss_pred eEEEEecCcch--h------------hccCEEEEEeCCeEEEecCHHHHh
Q 002434 497 STIIIARRLSL--I------------RNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 497 t~i~itH~l~~--~------------~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
|+|+++|..+. + ..+||+++|++|+ ..|+.+++.
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997554 3 3389999999887 667766553
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.6e-15 Score=162.05 Aligned_cols=196 Identities=24% Similarity=0.350 Sum_probs=137.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc--CCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER--FYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g--~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
+|.++|.+.+-. ++..+.|-||.|-.|..+++|||||-|||||++.|.. +--|..=.|++..
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCE------------- 327 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCE------------- 327 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeee-------------
Confidence 478888877763 3467899999999999999999999999999999863 3333333344333
Q ss_pred cceEEecCCCCccccHHHHH---------------------hcCcCCCHHHHHHHHH---HH-------HHHHhHHHhhc
Q 002434 386 QIGLVTQEPALLSLSIRDNI---------------------AYGRDATLDQIEEAAK---IA-------HAHTFISSLEK 434 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~eNi---------------------~~~~~~~~~~~~~~~~---~~-------~l~~~i~~l~~ 434 (922)
|+..--+.|--+.+ .-|...-.+++.++.. .. .+...+..|
T Consensus 328 ------QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 328 ------QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred ------eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 33322222211111 1121111223333222 11 122233333
Q ss_pred cchhhhcCCC-CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cC
Q 002434 435 GYETQVGRAG-LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-AD 512 (922)
Q Consensus 435 g~~t~vge~G-~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D 512 (922)
|++-.+-++. ..+|||=|-||+|||||+..|-+|.|||||.+||-..-.-+-+.|..| .+|.++|+|+-.++.. |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 6777777766 579999999999999999999999999999999998877777888777 4799999999999988 99
Q ss_pred EEEEEeCCeEE-EecCHH
Q 002434 513 YIAVMDEGRLF-EMGTHD 529 (922)
Q Consensus 513 ~i~vl~~G~i~-~~G~~~ 529 (922)
.|+.|++-++- ..|+|.
T Consensus 478 dIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 478 DIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHhhhhhhhhhhhcchHH
Confidence 99999988774 456654
No 419
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=5.6e-14 Score=183.24 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=102.8
Q ss_pred CccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH------HHHHHHhhccCCCEEE
Q 002434 396 LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI------KLSIARAVLLNPSILL 469 (922)
Q Consensus 396 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ------RiaiARAl~~~p~ili 469 (922)
.|+||++|||.+-.+++++ ..+++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 6899999999993356655 6888899999999999999 99999886 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc------CCCeEEEEecCcchhhc------cCEEEEE
Q 002434 470 LDEVTGGLDFEAERAVQEALDLLM------LGRSTIIIARRLSLIRN------ADYIAVM 517 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~l~~~~~------~D~i~vl 517 (922)
|||||++||+.+...+.+.|..+. .+.|+|+|||++..+.. +|+.+-+
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999988887652 36799999999988763 4666544
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=1.1e-13 Score=151.12 Aligned_cols=181 Identities=17% Similarity=0.266 Sum_probs=135.3
Q ss_pred EEeCCCCCCCcccceeEEecCCC-----EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEE
Q 002434 316 FSYLSRPEIPILSGFYLTVPAKK-----AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (922)
Q Consensus 316 f~y~~~~~~~vL~~isl~i~~G~-----~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 390 (922)
++||+ .+..+.+..|.|+.|+ ++..+|+||.||||++++++|.++|++|. ++..+ +|+|=
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 56763 3457889999999986 57889999999999999999999998762 22222 57888
Q ss_pred ecCCC-CccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEE
Q 002434 391 TQEPA-LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469 (922)
Q Consensus 391 ~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ili 469 (922)
||... =+.+|+|+-+. +.++.+...-....++.. |-..+..++..-.+||||+.||+|||-++=+.+++++
T Consensus 408 pqkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYl 479 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYL 479 (592)
T ss_pred ccccCccccchHHHHHH-------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEE
Confidence 88654 57799988653 233333222222112111 2234455666678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEecCcchhhc-cCEEEEEeC
Q 002434 470 LDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDE 519 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~--~~~~t~i~itH~l~~~~~-~D~i~vl~~ 519 (922)
.|||.+-||.+.+..--..+++. ..++|-.+|-|++-.... |||++|.+.
T Consensus 480 iDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 480 IDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999887777777664 468899999999877655 999998763
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.49 E-value=4.7e-14 Score=148.49 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=103.0
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIR 402 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~ 402 (922)
..+.+|+++++++ ++++|+|||||||||+++.+.+..-. |+ .|.. .+.+ +..++++.| +| ..++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~---vp~~--~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSF---VPAS--KAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCe---eccc--cceecceee---EeccCCch
Confidence 3588999999987 99999999999999999999764311 11 1111 1111 235777765 44 35677
Q ss_pred HHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCC---CCCCCH
Q 002434 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV---TGGLDF 479 (922)
Q Consensus 403 eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEp---ts~LD~ 479 (922)
||+..|... |. .+..+++-+-+...+|+++||||| |+++|.
T Consensus 84 ~~ls~g~s~----------------f~--------------------~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~ 127 (216)
T cd03284 84 DDLAGGRST----------------FM--------------------VEMVETANILNNATERSLVLLDEIGRGTSTYDG 127 (216)
T ss_pred hhhccCcch----------------HH--------------------HHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Confidence 777655310 00 012222222223469999999999 999998
Q ss_pred HHH-HHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHH
Q 002434 480 EAE-RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 480 ~~~-~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL 531 (922)
... ..+.+.+.+. .+.|+|++||+.+..+.+|++..+++|++...++.+++
T Consensus 128 ~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 128 LSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 642 3344444332 37899999999877777888888899998876655544
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1e-13 Score=144.42 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=98.2
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce-EEecCCCCccccH
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLSLSI 401 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~lf~~ti 401 (922)
+.++.+|+++++++|+.++|.||||+||||+++.+.++. +..++| +||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998762 233444 232211 12466
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~ 481 (922)
.|||...-. .+..+.++...+|+|++|+ ..+-++..+|+++|||||++++|+..
T Consensus 72 ~d~I~~~~~-------------------------~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 72 FNRLLSRLS-------------------------NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hhheeEecC-------------------------CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 666642111 1111233446789999975 45555788999999999999999976
Q ss_pred HHHH-HHHHHHHc-CCCeEEEEecCcchhhcc
Q 002434 482 ERAV-QEALDLLM-LGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 482 ~~~i-~~~l~~~~-~~~t~i~itH~l~~~~~~ 511 (922)
...+ .+.++.+. .+.++|++||..+.++.+
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 5544 34454443 478999999998877653
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.46 E-value=7.9e-13 Score=149.80 Aligned_cols=76 Identities=26% Similarity=0.273 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc---cC
Q 002434 445 LALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN---AD 512 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~---~D 512 (922)
..+|+||+|+++||+++. ++|+|||||||+++||+..+..+.+.+.+. +.+++++||+...+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999998888653 4578888898766544 46
Q ss_pred EEEEEeCCeE
Q 002434 513 YIAVMDEGRL 522 (922)
Q Consensus 513 ~i~vl~~G~i 522 (922)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.45 E-value=1.5e-13 Score=145.16 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHh----hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEe
Q 002434 446 ALTEEQKIKLSIARA----VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 446 ~LSGGqkQRiaiARA----l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
.||||||-+++||-- -+.++|++||||+.++||......+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999843 3568899999999999999999999999999988889999999999999999998763
No 425
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.39 E-value=2.9e-11 Score=129.17 Aligned_cols=172 Identities=20% Similarity=0.354 Sum_probs=133.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 732 LGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLII--ACMGVVTVVANFLQHFYFGIMGEKMTERVRR 809 (922)
Q Consensus 732 ~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~ 809 (922)
++++++++.++..+...++++.+++.....+ .+ .....+.+.+ +++.++.........+...+.+.+...++|+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGN-SD---NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRK 78 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT-SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777788888877743332 11 1222333333 3334444445555555667899999999999
Q ss_pred HHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 810 MMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSL 889 (922)
Q Consensus 810 ~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~ 889 (922)
++|++++++|.+||| ++++|++++|+++|++.+++.+...+..++..+..+++++++.+.++|+++++++++.|+.++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~ 156 (275)
T PF00664_consen 79 RLFEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFL 156 (275)
T ss_dssp HHHHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHh
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhhHHhhh
Q 002434 890 SAIAQVCTVTMLSDAILCNF 909 (922)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~ 909 (922)
......+...+..++...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~ 176 (275)
T PF00664_consen 157 ISFIFSKKIRKLSKKYQEAN 176 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccccccc
Confidence 88888877776655544443
No 426
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.37 E-value=5e-13 Score=160.97 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=83.3
Q ss_pred HHHhhccchhhhcCCC------CCCCHHHHHHHHHHHhhc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Q 002434 429 ISSLEKGYETQVGRAG------LALTEEQKIKLSIARAVL----------LNPSILLLDEVT-GGLDFEAERAVQEALDL 491 (922)
Q Consensus 429 i~~l~~g~~t~vge~G------~~LSGGqkQRiaiARAl~----------~~p~iliLDEpt-s~LD~~~~~~i~~~l~~ 491 (922)
...+|+++++.+++.| .+||||||||++||||++ .+|++||||||| ++||+.+...+.+.|..
T Consensus 445 ~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 445 NFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred EEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 3356888999999888 789999999999999887 599999999998 78999999999999998
Q ss_pred HcCCCeEEEEecCcchhhccCEEEEEeC-CeE
Q 002434 492 LMLGRSTIIIARRLSLIRNADYIAVMDE-GRL 522 (922)
Q Consensus 492 ~~~~~t~i~itH~l~~~~~~D~i~vl~~-G~i 522 (922)
+ ++.|+|+|||+.+....||++++|++ |+.
T Consensus 525 ~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 525 L-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred C-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 8 78899999999988888999999986 543
No 427
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.36 E-value=7.4e-11 Score=145.66 Aligned_cols=183 Identities=19% Similarity=0.316 Sum_probs=145.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (922)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~ 794 (922)
.+++++++.++.+.++..+++..++...+.....++.+.+++........ .....+..+++++.++..++.+++.+
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP----PALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666666666666655556666677777765432211 11112334456667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (922)
Q Consensus 795 ~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w 874 (922)
.+.+++.+...++|.++|++++++|++||| ++++|.+++|+++|++.++..+...+..++..+..+++++++.+.++|
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 875 RLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 875 ~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
+++++.+..+|+.++......+.......
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~ 330 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSE 330 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877776665554443
No 428
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=1.3e-11 Score=141.71 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=120.6
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC---EeCCC-----CCHHHHhhcceEEecCC
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG---ENIKN-----LKLEWLRSQIGLVTQEP 394 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g---~~i~~-----~~~~~lr~~i~~v~Q~~ 394 (922)
+..+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 34689999 99999999999999999999999999999999999999955 44443 34556788899886521
Q ss_pred CCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCC-HHHHHH-HHHHHhhccCCCEEEEeC
Q 002434 395 ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT-EEQKIK-LSIARAVLLNPSILLLDE 472 (922)
Q Consensus 395 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LS-GGqkQR-iaiARAl~~~p~iliLDE 472 (922)
+..-+++..+.-.+.+.++... +|.|-.+--. +|+ --|-|| |+++ +.+||
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--sltr~A~A~rEisl~---~ge~P------ 275 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVTRVAMAQREIGLA---VGEPP------ 275 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChHHHHHHHHHHHHh---cCCCC------
Confidence 1112233332223333333332 2433322110 000 001111 1111 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEecCcchhhccCEEEEEeCCeEEEecCHHH
Q 002434 473 VTGGLDFEAERAVQEALDLLM---LGR-----STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 473 pts~LD~~~~~~i~~~l~~~~---~~~-----t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~e 530 (922)
.|+|+|+.....+.+.+++.. +|. |+++.+|+++. .-||++.++.||+|+.+++..+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999999999998875 354 89999999985 6799999999999999888654
No 429
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.34 E-value=1.6e-10 Score=140.13 Aligned_cols=179 Identities=12% Similarity=0.147 Sum_probs=141.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 717 WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYF 796 (922)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 796 (922)
+.++.+.++.++.+..+++++++...+.+...+.+..+++...... .+. .....+..+++++.++..++.+++.+..
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--IPR-EALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555565666666777777777777777777777777654211 011 1122244455666777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 797 GIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRL 876 (922)
Q Consensus 797 ~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l 876 (922)
...+.+...++|.++|+++++.|.+||+ ++++|.+++|+++|++.++..+...+..++..++..++++++.++++|++
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 79999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002434 877 ALVALATLPILSLSAIAQVCTVTM 900 (922)
Q Consensus 877 ~lv~l~~~Pi~~~~~~~~~~~~~~ 900 (922)
++++++++|++++......+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~ 189 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAAD 189 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876655554443
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=9.7e-12 Score=130.67 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=92.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh--cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc--cc
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME--RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS--LS 400 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~--g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~--~t 400 (922)
.|-+|+++.=..+.+++|+||||+||||+++.+. ..+ +..|...... ...++|..|...-+. .|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4555666542223789999999999999999997 333 4566654432 125777777643332 23
Q ss_pred HHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH
Q 002434 401 IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 401 i~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~ 480 (922)
+.+++. .|. -+-||+++|+++..+|+++|||||++++|+.
T Consensus 85 i~~~~S--------------------~f~--------------------~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQS--------------------AFM--------------------IDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhccc--------------------hHH--------------------HHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 333321 111 1469999999999999999999999999997
Q ss_pred HH-HHHHHHHHHHcC----CCeEEEEecCcchhhcc
Q 002434 481 AE-RAVQEALDLLML----GRSTIIIARRLSLIRNA 511 (922)
Q Consensus 481 ~~-~~i~~~l~~~~~----~~t~i~itH~l~~~~~~ 511 (922)
.. ......++.+.+ +.++|++||.++.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 54 444556666542 24899999999877653
No 431
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=4.6e-12 Score=130.32 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCcchhhccCEEEEEe
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLM--LGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
++...+|+|++|...+.+. ..+|+++|+|||++++|+.....+. ..++.+. .+.++|++||..+..+.+|+---++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~ 135 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVR 135 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccce
Confidence 3345678887774333332 2499999999999999999766664 4455554 3789999999997666677533344
Q ss_pred CCeE
Q 002434 519 EGRL 522 (922)
Q Consensus 519 ~G~i 522 (922)
+++.
T Consensus 136 ~~~~ 139 (185)
T smart00534 136 NLHM 139 (185)
T ss_pred EEEE
Confidence 4443
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.25 E-value=4e-12 Score=133.86 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHc
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVT-----GGLDFEAERAVQEALDLLM 493 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpt-----s~LD~~~~~~i~~~l~~~~ 493 (922)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998764
No 433
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.21 E-value=2.9e-11 Score=145.05 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHhhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 445 LALTEEQKIKLSIARAVLLN----PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999885 69999999999999999999999999988899999999999999899999999987
Q ss_pred e
Q 002434 521 R 521 (922)
Q Consensus 521 ~ 521 (922)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 434
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.19 E-value=2.5e-09 Score=128.02 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 731 VLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRM 810 (922)
Q Consensus 731 ~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~ 810 (922)
..+++.+++.+.+.+...+..+++++...... .. ......+.+++++++++..++.+++.+.....+.+...++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAG--EP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777777777653221 11 1222345556677788888999999999999999999999999
Q ss_pred HHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 811 MFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLS 890 (922)
Q Consensus 811 ~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~ 890 (922)
+|+++++.|.+||+ ++++|.+++|+++|++.++......+..++..+..+++.+++.+.++|++++++++.+|+.++.
T Consensus 83 l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 83 LLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999 7999999999999999999999998899999888888889999999999999999998888776
Q ss_pred HHHHHHHH
Q 002434 891 AIAQVCTV 898 (922)
Q Consensus 891 ~~~~~~~~ 898 (922)
.+...+..
T Consensus 161 ~~~~~~~~ 168 (529)
T TIGR02857 161 MILIGWAA 168 (529)
T ss_pred HHHHHHHH
Confidence 55544443
No 435
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.18 E-value=3.1e-09 Score=128.53 Aligned_cols=177 Identities=12% Similarity=0.113 Sum_probs=128.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 795 (922)
+++++++.++.+..+..+++++++...+.....+.++.+++..+..+ . . ..+.+++++++++..+..++....
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS--D-V----LPTLALWAGFGVFNTIAYVLVARE 79 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454555555556666667777777777777788888777665321 1 0 112223333444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (922)
Q Consensus 796 ~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~ 875 (922)
...++.++..++|.++|+++++.|++||+ ++++|.+++|+++|++.+.......+..++..++++++.+++.+.++|+
T Consensus 80 ~~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 80 ADRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777999999999999999 7899999999999999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002434 876 LALVALATLPILSLSAIAQVCTVTML 901 (922)
Q Consensus 876 l~lv~l~~~Pi~~~~~~~~~~~~~~~ 901 (922)
++++++.++|+.++......+.....
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~ 183 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNG 183 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887776665544433
No 436
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.18 E-value=3.4e-09 Score=127.94 Aligned_cols=171 Identities=15% Similarity=0.069 Sum_probs=122.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 718 RLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFG 797 (922)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 797 (922)
+++++.++.+..+.++++++++..++.....++++.+++.................+...+++++++..++.+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555554444333334445555543211100000000011123345566778888888989999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 798 IMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLA 877 (922)
Q Consensus 798 ~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~ 877 (922)
.++.+....+|.++|+++++.|.+||+ ++++|.+++|+++|++.++......+..++..++++++++++.++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002434 878 LVALATLPILSLS 890 (922)
Q Consensus 878 lv~l~~~Pi~~~~ 890 (922)
++++.++|++++.
T Consensus 164 l~~~~~~~~~~~~ 176 (574)
T PRK11160 164 LTLGGILLLLLLL 176 (574)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888766543
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.18 E-value=5.3e-11 Score=141.62 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHhhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 446 ALTEEQKIKLSIARAVLL----NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
.|||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.++.|+|+|||++..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999996 6899999999999999999999999999877899999999999999999999998754
No 438
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.18 E-value=4.2e-09 Score=127.29 Aligned_cols=178 Identities=19% Similarity=0.305 Sum_probs=142.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 721 ELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMG 800 (922)
Q Consensus 721 ~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ 800 (922)
.+.++.++.++++++++++.+++.+...+.+..+++..+... . ......+...++++.++..+..+++.+.....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--D--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777777777777776666544322 1 111122334567777888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 801 EKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVA 880 (922)
Q Consensus 801 ~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~ 880 (922)
.+....+|..+|+++++.|.++|+ +.++|.+++|+++|++.++..+...+..++..+..+++.+++.++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 881 LATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 881 l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
++++|+.++..++..+........
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~ 184 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKE 184 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887777666554433
No 439
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.17 E-value=3.5e-09 Score=126.73 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHH
Q 002434 780 CMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDS 859 (922)
Q Consensus 780 ~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~ 859 (922)
++.++..++.+++.++....+.++..++|.++|+++++.|.+||+ ++++|++++|+++|++.++......+..++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~ 138 (529)
T TIGR02868 61 AFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVAL 138 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 355666778888888888999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 860 AAVIVAVIIGMLLEWRLALVALATLPILSLSA 891 (922)
Q Consensus 860 ~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~ 891 (922)
..+++++++.++++|++++++++.+|++.+..
T Consensus 139 ~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~ 170 (529)
T TIGR02868 139 VVGSAAVAAIALLSVPAALVLAAGLLLAGFVA 170 (529)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888876554
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.17 E-value=3.3e-11 Score=147.94 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=97.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccc-----eeEEecCC-CEEEEeCCCCCcHHHHHHHHhcC-CCCCCcEEEECCEeCCCCCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSG-----FYLTVPAK-KAVALVGRNGSGKSSIIPLMERF-YDPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~-----isl~i~~G-~~vaivG~sGsGKSTl~~ll~g~-~~~~~G~I~i~g~~i~~~~~ 380 (922)
.|.++++.. |++++ +|+++.+| +.++|+||||+||||+++.+.+. +.+..|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 477776643 34433 78888877 89999999999999999999886 333333
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
.+||...... ..+.+++.. ...++ -.+.++-..+|+|++|+..|+++
T Consensus 353 -------~~Vpa~~~~~-~~~~d~i~~--~i~~~-----------------------~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 -------IPIPANEHSE-IPYFEEIFA--DIGDE-----------------------QSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred -------CCccCCcccc-ccchhheee--ecChH-----------------------hHHhhhhhHHHHHHHHHHHHHHh
Confidence 1455443210 011222210 11110 01122345689999999999998
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc-CCCeEEEEecCcch
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLM-LGRSTIIIARRLSL 507 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~-~~~t~i~itH~l~~ 507 (922)
+ .+|+++|||||++++|+.....+. ..++.+. .+.++|++||..+.
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 7 789999999999999999888774 4555543 47889999998764
No 441
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.16 E-value=2.7e-09 Score=128.38 Aligned_cols=170 Identities=9% Similarity=0.005 Sum_probs=123.9
Q ss_pred hHHHHHHHhh-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 002434 715 SFWRLAELSF-AEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQH 793 (922)
Q Consensus 715 ~~~~~~~~~~-~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~ 793 (922)
.+++++++.+ +.++.+.++++..++.+.......+.++.++... .. . .. .....++++.++..++.++..
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~--~~--~--~~---~~~~~~~~~~~~~~~~~~~~~ 74 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEE--NF--L--GQ---GSLFSFGGLCLLALLFRIGAD 74 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc--c--cc---hHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 6555555555555555544443444444433211 00 0 00 112234455666677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (922)
Q Consensus 794 ~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~ 873 (922)
++...++.+...++|.++|+++++.|++||+ ++++|++++|+++|++.++..+.. +..++..++++++++++.++++
T Consensus 75 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 75 IFPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 789999999999999999998864 6777788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002434 874 WRLALVALATLPILSLSAIAQVC 896 (922)
Q Consensus 874 w~l~lv~l~~~Pi~~~~~~~~~~ 896 (922)
|+++++++.++|+.++......+
T Consensus 152 ~~L~li~l~~~~~~~~~~~~~~~ 174 (555)
T TIGR01194 152 VPMFAITISAIIIGTAAQLLAFM 174 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998987776655443
No 442
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.16 E-value=4.9e-09 Score=127.22 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=130.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 719 LAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGI 798 (922)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 798 (922)
++.+..+.+..+...++++++...+.....+.+..+++...... +... .....+.++++++.++..++.+++.+.+..
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444444555555555555555566666666554322 1111 111112334555566677788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 799 MGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLAL 878 (922)
Q Consensus 799 ~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~l 878 (922)
++.+...++|.++|+++++.|.+||+ .+++|++++|+++|++.++......+..++..+..+++.+++.++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7899999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002434 879 VALATLPILSLSAIAQVCTVTM 900 (922)
Q Consensus 879 v~l~~~Pi~~~~~~~~~~~~~~ 900 (922)
+++.++|++++......+....
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~ 191 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTP 191 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887665555444333
No 443
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.15 E-value=4.8e-09 Score=129.96 Aligned_cols=182 Identities=13% Similarity=0.204 Sum_probs=131.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 795 (922)
++.++...++.+..+...++++++..++.....+++..+++...... . ......+.+.++++.++..++.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--M--MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444445556666666554321 1 1111223344455666777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (922)
Q Consensus 796 ~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~ 875 (922)
..+.+.+...++|.++|+++++.|++||+ .+++|.+++|++ |.+.+.+.+...+..++..+..+++.+++.++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 799999999998 888888887777766677777777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 876 LALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 876 l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
+++++++++|++++..++..+......++
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 325 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHD 325 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777666554443
No 444
>PRK14079 recF recombination protein F; Provisional
Probab=99.12 E-value=8.2e-10 Score=124.70 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEE
Q 002434 445 LALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~ 515 (922)
.-+|+||++++++|+.|. .+|++++||||+|.||......+.+.|.... .+ +|| -.+.-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~--~it-~t~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QA--IVA-GTEAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cE--EEE-cCCCCCCCceEE
Confidence 357999999999999998 8999999999999999999999988875432 33 344 123345599999
Q ss_pred EEeCCeEEEe
Q 002434 516 VMDEGRLFEM 525 (922)
Q Consensus 516 vl~~G~i~~~ 525 (922)
.+++|++.-+
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999987644
No 445
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=6.8e-10 Score=125.87 Aligned_cols=63 Identities=29% Similarity=0.318 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHhhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh
Q 002434 445 LALTEEQKIKLSIARAVLL---------NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 509 (922)
..+|.||+++++||.++.. +|+|||||||+|.||+.....+.+.|... +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999988653 578999999886543
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=1.5e-10 Score=122.09 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=86.6
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc-CCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSI 401 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g-~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti 401 (922)
..+.+|+++++++|++++|.||||+||||+++.+.+ .+.+..|.....-. -+++|..| +|. ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-----------eEEeccce---EEEEecC
Confidence 468999999999999999999999999999999999 77778887654321 13344333 221 112
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~ 481 (922)
.|++.-+...-..|+ +|++-.-.-..+++++|||||.++.|+..
T Consensus 84 ~d~~~~~~StF~~e~------------------------------------~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 84 SDSIQHGMSTFMVEL------------------------------------SETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ccccccccchHHHHH------------------------------------HHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 233222211111111 22221111235799999999977777654
Q ss_pred HHHH-HHHHHHHc--CCCeEEEEecCcchhhcc
Q 002434 482 ERAV-QEALDLLM--LGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 482 ~~~i-~~~l~~~~--~~~t~i~itH~l~~~~~~ 511 (922)
...+ ...++.+. .+.|+|++||+.+.....
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 4443 33344433 367999999998765443
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.11 E-value=1.8e-10 Score=126.33 Aligned_cols=170 Identities=19% Similarity=0.286 Sum_probs=114.5
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----CCHHHH------------hh--cceEEecCCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEWL------------RS--QIGLVTQEPAL 396 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~----~~~~~l------------r~--~i~~v~Q~~~l 396 (922)
+||+..++||.||-||||-++.++|-.+|.-|.-- ++-+..+ ..-.++ +. ..-||.|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 58999999999999999999999999999887531 1111110 000111 10 01233333333
Q ss_pred ccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCC
Q 002434 397 LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (922)
Q Consensus 397 f~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~ 476 (922)
-.+++.+++.--. +.+...++++..+|. ......-.+||||+-||.+||-+.+++++++++|||.|-
T Consensus 177 ~k~~v~~~l~~~~--~r~~~~~~~~~~~L~-----------~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 177 VKGTVGSLLDRKD--ERDNKEEVCDQLDLN-----------NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHHh--hcccHHHHHHHHHHh-----------hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 3445555443211 111222333333222 222233457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEe
Q 002434 477 LDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 477 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
||.+.+..-...|+.+. .++=+|+|-|+++.+.. .|-|.++-
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99998888888888764 57889999999999877 88887774
No 448
>PRK13695 putative NTPase; Provisional
Probab=99.11 E-value=6.7e-11 Score=120.44 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDE--VTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
.....|||+++-++.+++..+++|+++++|| |+..+|....+.+.+++ ..++++|+++|+-..-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 3445699999999999999999999999999 55556655555555544 357899999999655567999999999
Q ss_pred CeEEEe
Q 002434 520 GRLFEM 525 (922)
Q Consensus 520 G~i~~~ 525 (922)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
No 449
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.09 E-value=9.4e-10 Score=117.08 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=87.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHH-HHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI-IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl-~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
+.++++...+++ -+++|+.+.|.|++||||||+ ++.+.++.++....+++...+ ++.++.
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~--- 68 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFI--- 68 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHH---
Confidence 556666655531 279999999999999999999 688888776543333333211 111111
Q ss_pred eEEecCCCCccccHHHHH-hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc----
Q 002434 388 GLVTQEPALLSLSIRDNI-AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL---- 462 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~---- 462 (922)
++. .+|-+. ++ ++.. +.+. .+ +-...+|+++.++-.+++.+-
T Consensus 69 ---------------~~~~~~g~~~--~~------------~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~~~ 115 (230)
T PRK08533 69 ---------------KQMMSLGYDI--NK------------KLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTRRF 115 (230)
T ss_pred ---------------HHHHHhCCch--HH------------Hhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHHHh
Confidence 111 111110 00 0000 0000 00 000124555554444444332
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHcC-CCeEEEEecCcchh--------hc-cCEEEEEe
Q 002434 463 LNPSILLLDEVTGGL----DFEAERAVQEALDLLML-GRSTIIIARRLSLI--------RN-ADYIAVMD 518 (922)
Q Consensus 463 ~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~--------~~-~D~i~vl~ 518 (922)
.+|+++++||||+.+ |+...+.+.+.++.+.+ +.| +++||+.... +. ||-|+.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~t-vi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKV-IILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCE-EEEEecccccccccceeEEEeeeEEEEEE
Confidence 379999999999999 77777778888877744 554 5556665432 22 56666665
No 450
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.09 E-value=6.8e-10 Score=130.70 Aligned_cols=107 Identities=28% Similarity=0.408 Sum_probs=88.5
Q ss_pred hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecC
Q 002434 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARR 504 (922)
Q Consensus 428 ~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 504 (922)
|+...--||-| +......|||||.|||-||+.+-.+= =+++||||+.+|-+.--..+.+.|++++ .|.|+|+|-|+
T Consensus 464 fL~~VGL~YLt-L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD 542 (935)
T COG0178 464 FLVDVGLGYLT-LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD 542 (935)
T ss_pred HHHHcCcCccc-ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 33333334433 35667899999999999999997653 4679999999999987777778887775 59999999999
Q ss_pred cchhhccCEEEEE------eCCeEEEecCHHHHhhcC
Q 002434 505 LSLIRNADYIAVM------DEGRLFEMGTHDELLATG 535 (922)
Q Consensus 505 l~~~~~~D~i~vl------~~G~i~~~G~~~eL~~~~ 535 (922)
.++++.||+|+=| +.|+|+.+|+++|++++.
T Consensus 543 edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 543 EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 9999999999988 578999999999999876
No 451
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.08 E-value=8.3e-09 Score=124.00 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHH
Q 002434 780 CMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDS 859 (922)
Q Consensus 780 ~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~ 859 (922)
++.++..+..+++.+...+++.+...++|.++|+++++.|++||+ ++++|.+++|+++|++.+...+. .+..++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 56 GLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 334444567788889999999999999999999999999999999 89999999999999999988665 467778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 860 AAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVT 899 (922)
Q Consensus 860 ~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~ 899 (922)
+.+++++++.++++|++++++++++|++++..+...+...
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 172 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVY 172 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999988776665554433
No 452
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.07 E-value=2e-08 Score=124.04 Aligned_cols=123 Identities=12% Similarity=0.209 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHH
Q 002434 774 WCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLS 853 (922)
Q Consensus 774 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~ 853 (922)
+.+.++++.++..++.+++.+....++.+...++|.++|+++++.|++||+ .+++|.+++|+ +|.+.+++.+...+.
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~ 257 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSAL 257 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 445556667778889999999999999999999999999999999999999 89999999999 699999998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 854 IFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVT 899 (922)
Q Consensus 854 ~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~ 899 (922)
.++..+..+++.+++.++++|++++++++++|++++..++..+...
T Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 303 (694)
T TIGR01846 258 TVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILR 303 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666678889999999999999999988887666554443
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.06 E-value=2.4e-10 Score=126.95 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=100.4
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~ 409 (922)
+++.+++|+.++|+|++||||||++++|++++++..|.+.++ |..++.... +..+.++.+... .+ ..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~--~~--------~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG--QG--------LA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC--CC--------cC
Confidence 557788999999999999999999999999999999988885 344433321 222332222100 00 00
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 002434 410 DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489 (922)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l 489 (922)
..+ ..=.++++|-.+|+++++|||.+ ....+.+
T Consensus 204 ~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 204 KVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred ccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 011 11235567778999999999996 2234455
Q ss_pred HHHcCCC-eEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHh
Q 002434 490 DLLMLGR-STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 490 ~~~~~~~-t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+....|. +++..+|..+.....||+..|..|++...|.+.+.+
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 5554555 458888999977779999999999999989888776
No 454
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.03 E-value=3.3e-08 Score=119.66 Aligned_cols=171 Identities=17% Similarity=0.319 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 728 LYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERV 807 (922)
Q Consensus 728 ~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~l 807 (922)
..+.+.++.+++.+.+.....+.+..+++..+... + . .....+..+++++.++..+..+++.+....++.++...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (576)
T TIGR02204 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD--S-S-GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADI 93 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc--c-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555556666666533222 1 1 111223344455556667778888899999999999999
Q ss_pred HHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 808 RRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPIL 887 (922)
Q Consensus 808 r~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~ 887 (922)
|..+|+++++.|.+||+ ..++|++++|+++|.+.++......+..++..+..+++.+++.+.++|++++++++.+|++
T Consensus 94 r~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~ 171 (576)
T TIGR02204 94 RRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLV 171 (576)
T ss_pred HHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 6889999999999999999999999989888899889999999999999999999998988
Q ss_pred HHHHHHHHHHHHhhhhh
Q 002434 888 SLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 888 ~~~~~~~~~~~~~~~~~ 904 (922)
++..++..+........
T Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (576)
T TIGR02204 172 LLPILLFGRRVRKLSRE 188 (576)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77767665555444433
No 455
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.03 E-value=3.3e-08 Score=122.08 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHH
Q 002434 774 WCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLS 853 (922)
Q Consensus 774 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~ 853 (922)
+.+.++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|+. |.+.+++.+...+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~ 254 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTL 254 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHH
Confidence 445566677778889999999999999999999999999999999999999 799999999997 79999998888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 854 IFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 854 ~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
..+..+..+++.+++.+.++|++++++++++|+.++..++..+......+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~ 304 (686)
T TIGR03797 255 TTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKER 304 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666778888899999999999999998888877666655544433
No 456
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.02 E-value=3.3e-08 Score=122.64 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHH
Q 002434 774 WCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLS 853 (922)
Q Consensus 774 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~ 853 (922)
+.+.++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|++.| ..+.+.+...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~ 272 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLA 272 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHH
Confidence 344455666778889999999999999999999999999999999999999 79999999999988 678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002434 854 IFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTML 901 (922)
Q Consensus 854 ~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~ 901 (922)
.++..+..+++.+++.+.++|++++++++++|+.++..+...+.....
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 320 (710)
T TIGR03796 273 TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA 320 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999888777666555443
No 457
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.00 E-value=5.7e-08 Score=117.85 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=124.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (922)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~ 794 (922)
.+++++.+.++.+..+..+++.+++..++.....+++..+++...... ....+.+++++++++..+..++...
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-------DIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555556666666566666666777766554311 1111223334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (922)
Q Consensus 795 ~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w 874 (922)
...+...+...+++.++|+++++.|.+||+ ..++|++++|+++|++.+.......+..++..++..++.+++.+.++|
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666777999999999999999 789999999999999999888888888888888877888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002434 875 RLALVALATLPILSLSAIAQVCTVTMLS 902 (922)
Q Consensus 875 ~l~lv~l~~~Pi~~~~~~~~~~~~~~~~ 902 (922)
++++++++++|+.++......+......
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877666665554433
No 458
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.00 E-value=8.5e-10 Score=135.96 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEecCcchhhc-cCEEEEEe
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
.+-..+|+|++|+..|+|++ .+|+++|||||++++|+.....+.. .++.+. .+.++|++||..+.... +|+..+ .
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-E 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-E
Confidence 34467899999999999999 8999999999999999998877754 454443 47899999999877655 444433 3
Q ss_pred CCeEE
Q 002434 519 EGRLF 523 (922)
Q Consensus 519 ~G~i~ 523 (922)
++.+.
T Consensus 464 ~~~~~ 468 (782)
T PRK00409 464 NASVE 468 (782)
T ss_pred EEEEE
Confidence 44443
No 459
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.98 E-value=3e-08 Score=119.76 Aligned_cols=128 Identities=14% Similarity=0.222 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhH
Q 002434 773 KWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRL 852 (922)
Q Consensus 773 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l 852 (922)
.|..+++++.++..++.+++.+.....+.+...++|.++|++++++|++||+ ++++|.+++|+++|++.+.......+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~ 114 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL--RHRTGDLMARATNDVDRVVFAAGEGV 114 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555566667777788888888899999999999999999999999999 78999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002434 853 SIFIQDSAAVIVAVIIG-MLLEWRLALVALATLPILSLSAIAQVCTVTMLS 902 (922)
Q Consensus 853 ~~~i~~~~~i~~~iiv~-~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~ 902 (922)
..++..++..++++++. +.++|++++++++++|++++......+...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 115 LTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888766656555544 589999999999999998887766665554433
No 460
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.97 E-value=3.1e-09 Score=109.07 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=62.6
Q ss_pred cchhhhcCCCCCCCHHHHH------HHHHHHhhccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHc-CCCeEEEEecC
Q 002434 435 GYETQVGRAGLALTEEQKI------KLSIARAVLLNPSILLLDEVTGGLD---FEAERAVQEALDLLM-LGRSTIIIARR 504 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQ------RiaiARAl~~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~-~~~t~i~itH~ 504 (922)
|....+......+|+||+| ....+.+.-.+|+++++|||++.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3334445566778999998 4444444567999999999999999 767777777776654 47899999998
Q ss_pred cch---------hhc-cCEEEEEeC
Q 002434 505 LSL---------IRN-ADYIAVMDE 519 (922)
Q Consensus 505 l~~---------~~~-~D~i~vl~~ 519 (922)
... +.. ||.|+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 654 444 899998873
No 461
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.96 E-value=9.7e-08 Score=115.35 Aligned_cols=160 Identities=26% Similarity=0.385 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 729 YAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVR 808 (922)
Q Consensus 729 ~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr 808 (922)
.+..+.++.++...+.....++.+.+++... .. ......+..+++++.++..++.++..+...+.+.+....+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD-----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555555554 11 12223345556677778888888899999999999999999
Q ss_pred HHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 809 RMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILS 888 (922)
Q Consensus 809 ~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~ 888 (922)
.++|+++++.|++||| .+++|.+++|+++|+..+...+......+...+..+++.+++.+.++|+++++++..+|++.
T Consensus 89 ~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 89 RDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 88999999999999999999999997777767888899999999999999999999988888
Q ss_pred HHHHHHHH
Q 002434 889 LSAIAQVC 896 (922)
Q Consensus 889 ~~~~~~~~ 896 (922)
+......+
T Consensus 167 ~~~~~~~~ 174 (567)
T COG1132 167 LVLSLLAR 174 (567)
T ss_pred HHHHHHHH
Confidence 88777664
No 462
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.96 E-value=9.6e-08 Score=115.81 Aligned_cols=126 Identities=21% Similarity=0.402 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHH
Q 002434 777 IIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFI 856 (922)
Q Consensus 777 ~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i 856 (922)
++++++++..+..+++.+...+++.+....+|..+|+++++.|.++|+ ...+|.+++|+++|++.+.......+..++
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 147 (582)
T PRK11176 70 VVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVV 147 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888889999999999999999999999999999 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 857 QDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 857 ~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
..++.+++.+++.++++|++++++++++|+.++..+...+........
T Consensus 148 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 195 (582)
T PRK11176 148 REGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKN 195 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877776666655554443
No 463
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.95 E-value=1.1e-07 Score=117.47 Aligned_cols=124 Identities=16% Similarity=0.250 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHH
Q 002434 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIF 855 (922)
Q Consensus 776 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~ 855 (922)
+.++++.++..++.+++.+...+.+.+...++|.++|+++++.|++| + .+++|.+++|+ +|++.+++.+...+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~ 266 (694)
T TIGR03375 191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTA 266 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHH
Confidence 34455566778889999999999999999999999999999999998 6 57999999999 79999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 856 IQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 856 i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
+..+..+++.+++.++++|+++++.++++|+.++..++..+.......
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 314 (694)
T TIGR03375 267 LIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAE 314 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788889999999999999999998888777665554443
No 464
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=1.9e-09 Score=136.87 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHH------HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C--C-CeEEEEecCcchhhccC
Q 002434 443 AGLALTEEQKIKLSI------ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L--G-RSTIIIARRLSLIRNAD 512 (922)
Q Consensus 443 ~G~~LSGGqkQRiai------ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~--~-~t~i~itH~l~~~~~~D 512 (922)
....|||||++|++| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999999988886432 2 2 48999999999998899
Q ss_pred EEEEEe
Q 002434 513 YIAVMD 518 (922)
Q Consensus 513 ~i~vl~ 518 (922)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 465
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=2e-09 Score=138.21 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-
Q 002434 443 AGLALTEEQKIKLSIARAVLL----------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN- 510 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~- 510 (922)
...+|||||++|++||+||.. +|++|||||||++||+.+...+.+.|+.+. .|+||++|||..+....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 347899999999999999985 799999999999999999999999998874 57899999999998766
Q ss_pred cCEEEEEeCC
Q 002434 511 ADYIAVMDEG 520 (922)
Q Consensus 511 ~D~i~vl~~G 520 (922)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999764
No 466
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.92 E-value=6.8e-10 Score=126.18 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=56.1
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EEEECCEeCCCCCHHHHhhcceEEecCC
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGENIKNLKLEWLRSQIGLVTQEP 394 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~ 394 (922)
.+|++||+++++||+++|+||||||||||++ .|+.+|++| +|.+||.++...+..++..- -+|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L-R~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL-DEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH-HHHHHhh
Confidence 5899999999999999999999999999999 788888888 79999999988765544321 1677753
No 467
>PRK03918 chromosome segregation protein; Provisional
Probab=98.91 E-value=2.2e-09 Score=136.23 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCCHHHHH------HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE
Q 002434 445 LALTEEQKI------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM 517 (922)
Q Consensus 445 ~~LSGGqkQ------RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl 517 (922)
..|||||+| |+||||+++.+|+++||||||++||+.....+.+.|..+. .+.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 5666778999999999999999999999999999998764 367999999999888889999999
Q ss_pred eC
Q 002434 518 DE 519 (922)
Q Consensus 518 ~~ 519 (922)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 468
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.91 E-value=3.4e-08 Score=120.89 Aligned_cols=188 Identities=12% Similarity=0.009 Sum_probs=141.0
Q ss_pred HHHHHHHhhhhHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHH
Q 002434 716 FWRLAELSFAEWL-----YAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANF 790 (922)
Q Consensus 716 ~~~~~~~~~~~~~-----~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~ 790 (922)
+++++++.+|.|. ++++.+++.++...+.....++.+.+++.....+ ..........|.+++++++++..+..+
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~-~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS-PRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565555544 5555666666666666677777777777665332 111211123355555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002434 791 LQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGM 870 (922)
Q Consensus 791 ~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~ 870 (922)
++..+......++++.+|++.|++....+++||| . ++|.+.+|+++|++.+...+...+..++..++.+++.++..+
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d--~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD--S-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC--C-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999999999999999 3 689999999999999999999999999999999888888777
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 002434 871 L-LEWRLALVALATLPILSLSAIAQVCTVTMLSDAILC 907 (922)
Q Consensus 871 ~-~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~~~~ 907 (922)
. .+|++++++++.+|+.++......+-..+......+
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~ 272 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQA 272 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 5 999999999999999998887777655554444333
No 469
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.87 E-value=2.4e-07 Score=112.72 Aligned_cols=128 Identities=15% Similarity=0.332 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHH
Q 002434 774 WCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLS 853 (922)
Q Consensus 774 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~ 853 (922)
..+.++++++..++..++|.+.+...+.|....+-.+.|+++++-|++||. +.++|.+++|+. |.+.|++.+....-
T Consensus 196 l~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l 272 (709)
T COG2274 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSIL 272 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHH
Confidence 344557788888999999999999999999999999999999999999999 789999999996 78888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 854 IFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 854 ~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
..+--+...++.+++.++++|+|++++++.+|+.++.+++..+..+...++
T Consensus 273 ~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~ 323 (709)
T COG2274 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888999999999999999999999999999998887765554
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.86 E-value=7.2e-09 Score=118.37 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=117.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
++-++++..|.. ...+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-
T Consensus 131 ~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------- 194 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------- 194 (432)
T ss_pred hheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-------------
Confidence 566777766742 35688885 99999999999999999999999999999999998887766432
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc------
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL------ 462 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~------ 462 (922)
.+++|.+. +.++..++. .|.+=..-.+-|.|+|+|.+.+.+.+
T Consensus 195 ----------~ev~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 195 ----------REVKDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred ----------ccHHHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12333321 011111110 11222344678999999999998887
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCH
Q 002434 463 -LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 463 -~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~ 528 (922)
.++-++++||+|...|+. +++-..+.+.. .|.|..+.+|....++++-+ .++|.|...++.
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 788999999999999997 45554554443 46777777885555566554 478888766553
No 471
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.86 E-value=1.4e-08 Score=106.78 Aligned_cols=138 Identities=19% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-cc
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LS 400 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~t 400 (922)
+..|-+|++|++++|++++|.||||+||||+++.+....-.. -|. .+ +.+ +..++++ ..+|. ..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccc---cEEEEecC
Confidence 347889999999999999999999999999999886432110 010 00 000 0012211 11221 23
Q ss_pred HHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH
Q 002434 401 IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 401 i~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~ 480 (922)
..||+..+...-..|+ +|++-.-....+|+++|||||.+++|+.
T Consensus 82 ~~d~~~~~~StF~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 82 ARDDIMKGESTFMVEL------------------------------------SETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred cccccccCcchHHHHH------------------------------------HHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 3344433322111122 2222111123588999999999999999
Q ss_pred HHHHHHHH-HHHHcC--CCeEEEEecCcchhhc
Q 002434 481 AERAVQEA-LDLLML--GRSTIIIARRLSLIRN 510 (922)
Q Consensus 481 ~~~~i~~~-l~~~~~--~~t~i~itH~l~~~~~ 510 (922)
....+..+ ++.+.+ +.++|++||..+....
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 87777666 555544 7899999999887654
No 472
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.85 E-value=1.8e-08 Score=125.67 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=58.1
Q ss_pred hccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCCeEEEEecCcchh----------hccCEEEEEeCCeEEEecC
Q 002434 461 VLLNPSILLLDEVTGGL-DFEAERAVQEALDLLM-LGRSTIIIARRLSLI----------RNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 461 l~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~----------~~~D~i~vl~~G~i~~~G~ 527 (922)
+..+|+++++|||+.+| |+.....+.+.++..+ .+.++|++||+++.+ ..||++++|.+|++.+.|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6899999999998764 478999999999876 4699999999999877664
No 473
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.84 E-value=1.5e-08 Score=107.64 Aligned_cols=64 Identities=28% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHhhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchh
Q 002434 445 LALTEEQKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLI 508 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~ 508 (922)
..+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999998888776 89999999999999999999999987766 77899999997654
No 474
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.83 E-value=3.6e-09 Score=138.31 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHhh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEe
Q 002434 443 AGLALTEEQKIKLSIARAV----LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.++.++|+|||++..+..||+++.+.
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 4468999999999999998 578899999999999999999999999988877789999999999998899997653
No 475
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.82 E-value=8.5e-10 Score=133.95 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 162 IQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY-----ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVG 236 (922)
Q Consensus 162 ~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 236 (922)
.........+.+.|++.++.+||..+.+......| .....+..+...+..........+...+......+++|+|
T Consensus 35 ~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig 114 (644)
T PRK10733 35 STFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIG 114 (644)
T ss_pred HHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHH
Confidence 33344455667778888899999998877654444 3333333333333322222222233333444567778899
Q ss_pred HHHHHcCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEe
Q 002434 237 RFLVTHNKAHGG---EIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRN 313 (922)
Q Consensus 237 ~~lv~~g~lt~g---~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~ 313 (922)
++++..|.+++| .++++.........+ ..+...+..+.....+.+|+.++.+...+..
T Consensus 115 ~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------------------ 175 (644)
T PRK10733 115 VWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------------------ 175 (644)
T ss_pred HHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH------------------
Confidence 999999999887 444432222222222 3344445555555566667766654321100
Q ss_pred EEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 314 VYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 314 v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..+++...+++| +.|+||+|+||||+++.+++...
T Consensus 176 ------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 ------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122245566 89999999999999999988653
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.79 E-value=3.2e-08 Score=98.32 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=76.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEE 418 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 418 (922)
++.|.|++|+||||+++.+++...+..|.+.+. +++...- ...++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-------------------~~e~~~~--~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV-------------------DIEEEIE--ELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE-------------------ECCcchH--HHHHHHhhh----------
Confidence 368999999999999999999887765655443 3322110 011111000
Q ss_pred HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC----------CHHHHHHHHHH
Q 002434 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL----------DFEAERAVQEA 488 (922)
Q Consensus 419 ~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L----------D~~~~~~i~~~ 488 (922)
.. ....++ ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+.+.
T Consensus 50 -----~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 50 -----SL----KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred -----hh----cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 00 000011 11112222233455666888999999999999999999544 44445666655
Q ss_pred HHHHc-CCCeEEEEecCcch
Q 002434 489 LDLLM-LGRSTIIIARRLSL 507 (922)
Q Consensus 489 l~~~~-~~~t~i~itH~l~~ 507 (922)
+.... .+.|+|+++|....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHhcCCceEEEEEecCCc
Confidence 55554 37899999997643
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.79 E-value=1e-08 Score=106.73 Aligned_cols=119 Identities=24% Similarity=0.318 Sum_probs=78.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIE 417 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~ 417 (922)
.+.|+||+||||||+++.|++.+++. .|.|...+.++. +... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeecc-----------------------
Confidence 68899999999999999999988754 567665443331 1100 1112222211
Q ss_pred HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCe
Q 002434 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497 (922)
Q Consensus 418 ~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 497 (922)
+|.+...++ =++++|+..+|+++++||+. |.++- ..+++....|.+
T Consensus 56 ----------------------vg~~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~---~~~l~~a~~G~~ 101 (198)
T cd01131 56 ----------------------VGLDTLSFE------NALKAALRQDPDVILVGEMR---DLETI---RLALTAAETGHL 101 (198)
T ss_pred ----------------------cCCCccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHH---HHHHHHHHcCCE
Confidence 111111111 14788999999999999996 66543 333444456889
Q ss_pred EEEEecCcchhhccCEEEEEe
Q 002434 498 TIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 498 ~i~itH~l~~~~~~D~i~vl~ 518 (922)
++.++|..+.....||++.|-
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEecCCcHHHHHhHHHhhc
Confidence 999999999888899987763
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=3.3e-07 Score=87.76 Aligned_cols=117 Identities=29% Similarity=0.376 Sum_probs=82.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCC-cEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHH
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLD 414 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~-G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 414 (922)
+|..+.|+||+|+||||+++.|++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999887655 4555655433222211110
Q ss_pred HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 002434 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE------- 487 (922)
Q Consensus 415 ~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~------- 487 (922)
............+++.++..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 222334455677888899999999988899999999999999987776653
Q ss_pred HHHHHcCCCeEEEEecC
Q 002434 488 ALDLLMLGRSTIIIARR 504 (922)
Q Consensus 488 ~l~~~~~~~t~i~itH~ 504 (922)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223446677777773
No 479
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=1.2e-08 Score=133.49 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 445 LALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 489999999999999997 478999999999999999999999999988777889999999999999999987753
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.73 E-value=2.9e-08 Score=111.47 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCccc-----------ceeEEecCCCEEEEeCC
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS-----------GFYLTVPAKKAVALVGR 345 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~-----------~isl~i~~G~~vaivG~ 345 (922)
+..+.+|++++++.++.. +..+....+.++|+||+|.||+ ++++|+ |+++.|.+|++++||||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn----~~~~e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVN----GDDPEKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccC----CCCccccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 445789999999876432 1122234578999999999985 347897 99999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCC
Q 002434 346 NGSGKSSIIPLMERFYDPT 364 (922)
Q Consensus 346 sGsGKSTl~~ll~g~~~~~ 364 (922)
+|+|||||+++|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999987643
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.69 E-value=3.5e-08 Score=103.03 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=55.4
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHH
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~------------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 402 (922)
++|++++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 77888 689998888888887753 466777778887
Q ss_pred HH
Q 002434 403 DN 404 (922)
Q Consensus 403 eN 404 (922)
+|
T Consensus 78 ~~ 79 (205)
T PRK00300 78 GN 79 (205)
T ss_pred Cc
Confidence 77
No 482
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.68 E-value=3.9e-08 Score=125.89 Aligned_cols=78 Identities=28% Similarity=0.278 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-c
Q 002434 442 RAGLALTEEQKIKLSIARAVLL--------NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-A 511 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~--------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~ 511 (922)
.....|||||+|+++|||||.. +|++|+|||||++||+.+...+.+.|..+. .|+||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3457899999999999999995 899999999999999999999999998875 58999999996666555 5
Q ss_pred CEEEEEeC
Q 002434 512 DYIAVMDE 519 (922)
Q Consensus 512 D~i~vl~~ 519 (922)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 56666543
No 483
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.62 E-value=2.9e-07 Score=98.40 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHhhcc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHH-cCCCeEEEEecCcch
Q 002434 446 ALTEEQKIKLSIARAVLL--NPSILLLDEVTGGLD---FEAERAVQEALDLL-MLGRSTIIIARRLSL 507 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~--~p~iliLDEpts~LD---~~~~~~i~~~l~~~-~~~~t~i~itH~l~~ 507 (922)
..+.++++.+..++..+. +|+++++||||+.+| ......+.+.++.+ ..++|+++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 456788999999999997 999999999996544 43334444445443 357888888887543
No 484
>PRK02224 chromosome segregation protein; Provisional
Probab=98.60 E-value=6.4e-08 Score=122.96 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=66.5
Q ss_pred CCCCHHHHH------HHHHHHhhccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCcchhhc
Q 002434 445 LALTEEQKI------KLSIARAVLLN-----P-SILLLDEVTGGLDFEAERAVQEALDLLML-G-RSTIIIARRLSLIRN 510 (922)
Q Consensus 445 ~~LSGGqkQ------RiaiARAl~~~-----p-~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~ 510 (922)
..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999988887753 4 479999999999999
Q ss_pred cCEEEEEeCC
Q 002434 511 ADYIAVMDEG 520 (922)
Q Consensus 511 ~D~i~vl~~G 520 (922)
||++++|.+.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
No 485
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=6.5e-07 Score=89.25 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
..|-|+-=---+.|.+- +.-|+|||||-|+|.+.-+-.+...|+++. .|.-+|+.||.+=.+.. --+|+-++.|-+
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 45778776666666654 558999999999999999999999998875 47778899998766554 567888877664
Q ss_pred EecCHHH
Q 002434 524 EMGTHDE 530 (922)
Q Consensus 524 ~~G~~~e 530 (922)
+.-+++|
T Consensus 207 ~~~~fe~ 213 (233)
T COG3910 207 EERDFEE 213 (233)
T ss_pred cccchHH
Confidence 3334444
No 486
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.49 E-value=1.5e-05 Score=96.05 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhh-hH
Q 002434 774 WCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSN-RL 852 (922)
Q Consensus 774 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~-~l 852 (922)
|..+++++.++..++.+++.++....+.+...++|.++|+++++.|.+.+ +...+++.+|++.+...+.. .+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~ 120 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGL 120 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHH
Confidence 44455666677778888999999999999999999999999999998433 45678899999999988776 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002434 853 SIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTM 900 (922)
Q Consensus 853 ~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~ 900 (922)
..++..+..++. +++.+.++|+++++++..+|++++..++..+..+.
T Consensus 121 ~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 121 FAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666666555444 46778999999999998888877765554444433
No 487
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=2e-07 Score=106.69 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=70.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC---CEeCCCCCHHH-
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD---GENIKNLKLEW- 382 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~---g~~i~~~~~~~- 382 (922)
+.++.++++..|.. ...+++.++ +|.+||+++|+|+||||||||+++|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 138 ~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 45899999999963 467899996 999999999999999999999999999999999999885 56666554433
Q ss_pred ---HhhcceEEecCC
Q 002434 383 ---LRSQIGLVTQEP 394 (922)
Q Consensus 383 ---lr~~i~~v~Q~~ 394 (922)
+++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235799999953
No 488
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.42 E-value=2.4e-07 Score=107.43 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=49.6
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~ 406 (922)
+++.++.+++|+++++|||||+||||++..|++.+.+..|.. +|++|.+|+ |..+..|++.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 334445566789999999999999999999999887666642 678999987 6677789987
Q ss_pred c
Q 002434 407 Y 407 (922)
Q Consensus 407 ~ 407 (922)
+
T Consensus 307 ~ 307 (484)
T PRK06995 307 I 307 (484)
T ss_pred H
Confidence 5
No 489
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.41 E-value=0.00078 Score=77.01 Aligned_cols=191 Identities=9% Similarity=-0.028 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 91 VSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQI-------------ALITLCTGPFIVAAGGISNIFLHR 157 (922)
Q Consensus 91 ~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li~~~~~~~~l-------------~lv~l~~~p~~~~~~~~~~~~~~~ 157 (922)
-.|+..|+...-+...+....++.++.+++..+.++..+|..+ ..++++...+-.++...+++++.+
T Consensus 191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~ 270 (409)
T PRK11098 191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG 270 (409)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 4699999988888777777778888877777777776665442 223333333333344556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 158 LAENIQDAYAEAASIAEQAVSYIRTLYAFTNET-LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVG 236 (922)
Q Consensus 158 ~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 236 (922)
..-+.++..++....+...=++.+ +.|. ...++|.+..++..+...+.........+ ...+..++-+.+.
T Consensus 271 Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~----y~~~~~i~P~iv~ 341 (409)
T PRK11098 271 LEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFNIARIL----YLQVDNVFGLFLL 341 (409)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 666666666555443322212221 1222 23334444444444443333222222222 2222223333334
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002434 237 RFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 237 ~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 290 (922)
+-....|+++.|.+.....++.....+++-+...+..+.+-++..+|+.++.+.
T Consensus 342 aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 342 FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999888888888888888999999999999999999988654
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.38 E-value=8.2e-08 Score=113.29 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=91.2
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHH--hcCCCCCCcEEEECCEeCCCCCHHHHhh---cceEEecCCCCccccHHHHHhc
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTLGEVLLDGENIKNLKLEWLRS---QIGLVTQEPALLSLSIRDNIAY 407 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll--~g~~~~~~G~I~i~g~~i~~~~~~~lr~---~i~~v~Q~~~lf~~ti~eNi~~ 407 (922)
=+++|..+.|.|++|||||||..-. .|..++.+..+++... -+++++++ .+|+-.++.. -+ +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~-~~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLV-DE----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHh-hc----CceEE
Confidence 4789999999999999999999765 3444444566666653 23344443 3444433221 00 01111
Q ss_pred CcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH--HhhccCCCEEEEeCCCCCCCHHHHHHH
Q 002434 408 GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA--RAVLLNPSILLLDEVTGGLDFEAERAV 485 (922)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA--RAl~~~p~iliLDEpts~LD~~~~~~i 485 (922)
-............+..++.+.+..++ ..+|+||+||+.|+ .++..+|+.. ...++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 00000000111122223333333332 35789999999999 6666665433 4566777
Q ss_pred HHHHHHHc-CCCeEEEEecCcch--------h-hc-cCEEEEEe
Q 002434 486 QEALDLLM-LGRSTIIIARRLSL--------I-RN-ADYIAVMD 518 (922)
Q Consensus 486 ~~~l~~~~-~~~t~i~itH~l~~--------~-~~-~D~i~vl~ 518 (922)
.+.++.+. .++|+|+++|+.+. + +. ||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77776654 48999999998753 2 33 78898887
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.37 E-value=5.9e-07 Score=92.55 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=59.8
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC--Cc-cccHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA--LL-SLSIR 402 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ti~ 402 (922)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-...+ .+..++++.|.+. .+ ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455677889999999999999999999999999999999999999774332221 2345667666543 23 35777
Q ss_pred HHHhc
Q 002434 403 DNIAY 407 (922)
Q Consensus 403 eNi~~ 407 (922)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 492
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=2.7e-07 Score=105.69 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcE---EEECCEeCCCCCHHHH------hhcceEEecCC
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE---VLLDGENIKNLKLEWL------RSQIGLVTQEP 394 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~---I~i~g~~i~~~~~~~l------r~~i~~v~Q~~ 394 (922)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.+. |-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 999999999999999999999999999999988643 3344555554443333 44689999998
Q ss_pred CCcc-ccHHHHHh
Q 002434 395 ALLS-LSIRDNIA 406 (922)
Q Consensus 395 ~lf~-~ti~eNi~ 406 (922)
..+. .++.+|+.
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7664 56666653
No 493
>PRK12369 putative transporter; Reviewed
Probab=98.31 E-value=0.0019 Score=72.28 Aligned_cols=231 Identities=10% Similarity=-0.031 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 45 AAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLA 124 (922)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~~~~i~~li 124 (922)
.+..+..++-.+...+.-.-+-++++++-+..+- ..|+ +. .|+..|++..-+........++.++++++..+.
T Consensus 78 ~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN--PD----QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~ 150 (326)
T PRK12369 78 LIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NIEG--SS----QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIP 150 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCC--cc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444321 1222 22 699999988888777777777777777776666
Q ss_pred HHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch-HH
Q 002434 125 IAFVNCWQI------------ALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE-TL 191 (922)
Q Consensus 125 ~~~~~~~~l------------~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e-~~ 191 (922)
++..++..+ .+++++...+..++...+++.+.+...+.++..++....+...=++-+. + .| ..
T Consensus 151 iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~ 226 (326)
T PRK12369 151 ILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPET 226 (326)
T ss_pred HHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHH
Confidence 666544222 2222333333334445556666666655555555543322111000010 1 12 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 192 AKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNF 271 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~ 271 (922)
..++|.+..+...+...+......+..+... +..++-..+.+.....|+++.|.+.....++.....++.-+...+
T Consensus 227 l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~----~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y 302 (326)
T PRK12369 227 LIELFTGLRFNYFRLFLHYGYFNIWLISFSQ----MMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNW 302 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444433333333222222222 222222333456677999999999988888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 002434 272 YSFDQGRIAAYRLYEMISR 290 (922)
Q Consensus 272 ~~~~~a~~a~~ri~~~l~~ 290 (922)
.++.+-++..+|+.++.+.
T Consensus 303 ~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 303 TTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 494
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.31 E-value=9.5e-06 Score=102.00 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHhhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc
Q 002434 457 IARAVLLNPSILLLDEVTGGL-DFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 510 (922)
|+|++..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 7889999999887774 57899999999987754
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=1.7e-06 Score=97.68 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=80.2
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDAT 412 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 412 (922)
.+++..+.|.||+||||||+++.|.+.+++ .+|.|..-+.++.-. .......+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 457899999999999999999999997764 467776544322110 00011111111
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002434 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (922)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 492 (922)
.+|..+.. -.=++++||-.+||++++||+. |+++.....+ ..
T Consensus 176 --------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa 217 (343)
T TIGR01420 176 --------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT---AA 217 (343)
T ss_pred --------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HH
Confidence 11111101 1124677888999999999997 8887665443 34
Q ss_pred cCCCeEEEEecCcchhhccCEEEEE
Q 002434 493 MLGRSTIIIARRLSLIRNADYIAVM 517 (922)
Q Consensus 493 ~~~~t~i~itH~l~~~~~~D~i~vl 517 (922)
..|.+++...|..+.....+|++-|
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 5688988889998888778887655
No 496
>PRK01889 GTPase RsgA; Reviewed
Probab=98.30 E-value=3.5e-07 Score=103.57 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi 405 (922)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+..+++.....|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3667777788999999999999999999999999999999999998754322 2345689999999999988788888
Q ss_pred hcCc
Q 002434 406 AYGR 409 (922)
Q Consensus 406 ~~~~ 409 (922)
.+..
T Consensus 261 ~l~~ 264 (356)
T PRK01889 261 QLWD 264 (356)
T ss_pred cccC
Confidence 7754
No 497
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.2e-05 Score=86.15 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=133.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 735 IGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSA 814 (922)
Q Consensus 735 ~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ 814 (922)
+.+.+.++..-.++++++..+..++... .......+...++++.++-.+..+.+.-....++.++...||.++|++
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~~----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEGQ----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455557778888877776532 123333445555777777888888888889999999999999999999
Q ss_pred HHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 815 MLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894 (922)
Q Consensus 815 ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~ 894 (922)
+.+.+-.|=. ..|+|...+.+..-++.++.-.+..++.+..+...-++.++..++++|+-+++++.++|++-+++++-
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 78999999999999999999999999999999998899999999999999999999999999998887
Q ss_pred HHHHHhhh
Q 002434 895 VCTVTMLS 902 (922)
Q Consensus 895 ~~~~~~~~ 902 (922)
.+..++.+
T Consensus 161 g~~a~~~s 168 (559)
T COG4988 161 GLAAKDAS 168 (559)
T ss_pred HHHHhHHH
Confidence 77766544
No 498
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.29 E-value=4.3e-06 Score=94.27 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=115.4
Q ss_pred EEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh-cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEec
Q 002434 314 VYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ 392 (922)
Q Consensus 314 v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 392 (922)
|++..|+++ .+.+ +-|++| ++.|||..=-|||||+++|. |.|+-.-| ||.. .| | -
T Consensus 227 ve~~LP~~g---~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~V--V-T 282 (448)
T PF09818_consen 227 VEIELPNGG---TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FV--V-T 282 (448)
T ss_pred EEEECCCCC---EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EE--E-E
Confidence 566665421 2333 468899 99999999999999999995 67764444 3421 11 1 1
Q ss_pred CCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeC
Q 002434 393 EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472 (922)
Q Consensus 393 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDE 472 (922)
++.-.. | .+.+ -.....+.+..||..||.|.||. .-.-.+=||---|=-.|..||=..+++||+||
T Consensus 283 ~~~avk--i--------rAED---GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE 348 (448)
T PF09818_consen 283 DPDAVK--I--------RAED---GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDE 348 (448)
T ss_pred CCCceE--E--------EecC---CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcC
Confidence 111000 0 0000 01223456778999999999988 33445779999999999999999999999999
Q ss_pred CCCCC-----CHHHHHHH----------HHHHHHHc--CCCeEEEEecCc-chhhccCEEEEEeCCe
Q 002434 473 VTGGL-----DFEAERAV----------QEALDLLM--LGRSTIIIARRL-SLIRNADYIAVMDEGR 521 (922)
Q Consensus 473 pts~L-----D~~~~~~i----------~~~l~~~~--~~~t~i~itH~l-~~~~~~D~i~vl~~G~ 521 (922)
=|||- |...++.+ .+.++.+. .|-++|+|+--. .++..||+|++|++=+
T Consensus 349 DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 349 DTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred cccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 99997 66656666 22234432 367777777555 5677899999999743
No 499
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.29 E-value=6.1e-06 Score=95.45 Aligned_cols=177 Identities=16% Similarity=0.238 Sum_probs=107.8
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH---HH-----HhhcceEEecCC
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EW-----LRSQIGLVTQEP 394 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~---~~-----lr~~i~~v~Q~~ 394 (922)
+..+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-+++.. +. +++.+.++.+-
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~- 227 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS- 227 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC-
Confidence 35689999 9999999999999999999999999999999998877776654433221 11 11112222211
Q ss_pred CCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH-HHHHHHHHHHhhccCCCEEEEeCC
Q 002434 395 ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE-EQKIKLSIARAVLLNPSILLLDEV 473 (922)
Q Consensus 395 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG-GqkQRiaiARAl~~~p~iliLDEp 473 (922)
++...+++..+.-.+...++... +|+|-.+=-. +|+- -|-|| -|+ +.+.||
T Consensus 228 --------------d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~D--slTr~A~A~R-Eis---------l~~ge~ 279 (440)
T TIGR01026 228 --------------DQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMD--SVTRFAMAQR-EIG---------LAAGEP 279 (440)
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEe--ChHHHHHHHH-HHH---------HhcCCC
Confidence 12223333333333333344432 3544332110 1110 01111 011 123453
Q ss_pred --CCCCCHHHHHHHHHHHHHHcC-CC-------eEEEEecCcchhhccCEEEEEeCCeEEEecCHHH
Q 002434 474 --TGGLDFEAERAVQEALDLLML-GR-------STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 474 --ts~LD~~~~~~i~~~l~~~~~-~~-------t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~e 530 (922)
+.|+|+.....+.+.+++... ++ |+++-+|+++ =.-+|++..+.||+|+-+++..+
T Consensus 280 P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 280 PATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 568999999899888877643 45 6777789873 23489999999999998766544
No 500
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.29 E-value=1.5e-06 Score=93.26 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=34.4
Q ss_pred hccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHc--CCCeEEEEecCc
Q 002434 461 VLLNPSILLLDEVTGG------LDFEAERAVQEALDLLM--LGRSTIIIARRL 505 (922)
Q Consensus 461 l~~~p~iliLDEpts~------LD~~~~~~i~~~l~~~~--~~~t~i~itH~l 505 (922)
..++|+++|+| |+++ +|+.....+.+.++++. .+.|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 68888888888887764 378888888864
Done!