Query 002434
Match_columns 922
No_of_seqs 566 out of 4041
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 02:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-114 4E-119 1119.5 88.0 780 29-898 135-920 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 9E-104 3E-108 1016.2 77.1 770 31-904 109-881 (1284)
3 4f4c_A Multidrug resistance pr 100.0 2.8E-89 9.6E-94 883.5 46.4 516 32-547 796-1318(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 9.9E-85 3.4E-89 780.0 68.1 511 34-546 67-579 (587)
5 4a82_A Cystic fibrosis transme 100.0 1.4E-84 4.8E-89 778.3 62.7 507 37-545 68-576 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 7.1E-85 2.4E-89 783.3 60.2 512 33-547 80-592 (598)
7 3b5x_A Lipid A export ATP-bind 100.0 9.7E-83 3.3E-87 763.3 71.4 507 37-546 72-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.1E-82 3.8E-87 764.7 69.4 510 36-546 68-584 (595)
9 3b60_A Lipid A export ATP-bind 100.0 1.3E-82 4.4E-87 762.3 66.6 506 37-545 72-579 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 3.9E-78 1.3E-82 777.9 54.6 516 32-547 751-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.2E-63 4.1E-68 547.8 27.2 275 271-547 15-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 6.9E-54 2.4E-58 458.6 30.4 238 307-545 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 4.2E-53 1.4E-57 456.0 28.7 239 307-546 16-255 (260)
14 2ixe_A Antigen peptide transpo 100.0 1.5E-52 5.2E-57 454.1 28.7 240 306-545 14-257 (271)
15 1mv5_A LMRA, multidrug resista 100.0 2.3E-53 7.7E-58 454.0 19.7 235 309-545 2-238 (243)
16 3gd7_A Fusion complex of cysti 100.0 6.7E-51 2.3E-55 460.2 22.9 229 305-535 16-244 (390)
17 2cbz_A Multidrug resistance-as 100.0 4E-50 1.4E-54 427.0 23.0 224 308-545 3-229 (237)
18 2pze_A Cystic fibrosis transme 100.0 6.6E-50 2.3E-54 423.3 23.7 221 307-541 5-226 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 1E-47 3.6E-52 416.1 25.5 218 308-538 7-238 (275)
20 3tif_A Uncharacterized ABC tra 100.0 1.5E-47 5.2E-52 406.6 23.0 213 309-532 2-233 (235)
21 1ji0_A ABC transporter; ATP bi 100.0 4.1E-47 1.4E-51 404.7 26.3 218 308-534 6-229 (240)
22 3tui_C Methionine import ATP-b 100.0 1.6E-47 5.3E-52 426.9 22.7 218 307-535 23-255 (366)
23 4g1u_C Hemin import ATP-bindin 100.0 8.7E-47 3E-51 407.6 22.4 213 308-534 11-238 (266)
24 2bbs_A Cystic fibrosis transme 100.0 7E-47 2.4E-51 412.7 21.2 216 306-540 38-254 (290)
25 2olj_A Amino acid ABC transpor 100.0 1.8E-46 6.3E-51 404.0 24.0 213 308-534 24-249 (263)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 2.5E-46 8.5E-51 417.2 23.7 214 308-535 4-230 (359)
27 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-46 2.3E-50 398.2 25.0 212 307-533 14-235 (256)
28 1g6h_A High-affinity branched- 100.0 3.4E-46 1.2E-50 401.6 22.5 214 308-531 7-240 (257)
29 1b0u_A Histidine permease; ABC 100.0 5.8E-46 2E-50 400.7 23.4 213 308-534 6-243 (262)
30 3rlf_A Maltose/maltodextrin im 100.0 5.4E-46 1.8E-50 417.1 23.1 212 308-535 3-225 (381)
31 2pcj_A ABC transporter, lipopr 100.0 3.5E-46 1.2E-50 393.4 20.1 206 308-527 4-222 (224)
32 2yz2_A Putative ABC transporte 100.0 1.6E-45 5.3E-50 398.4 23.7 212 309-534 3-228 (266)
33 2yyz_A Sugar ABC transporter, 100.0 1.8E-45 6E-50 411.6 24.4 212 308-535 3-225 (359)
34 2ihy_A ABC transporter, ATP-bi 100.0 7.7E-46 2.6E-50 402.7 19.4 213 308-534 21-253 (279)
35 1z47_A CYSA, putative ABC-tran 100.0 2.2E-45 7.5E-50 409.8 22.0 214 307-535 13-237 (355)
36 2it1_A 362AA long hypothetical 100.0 1.7E-45 6E-50 412.1 21.1 212 308-535 3-225 (362)
37 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-45 9.9E-50 408.6 22.2 210 309-535 2-219 (348)
38 2onk_A Molybdate/tungstate ABC 100.0 2.5E-45 8.5E-50 390.4 20.4 207 309-534 2-217 (240)
39 1oxx_K GLCV, glucose, ABC tran 100.0 2.2E-45 7.5E-50 411.0 20.7 213 309-535 4-232 (353)
40 2qi9_C Vitamin B12 import ATP- 100.0 4.5E-45 1.5E-49 390.3 22.2 206 309-533 5-222 (249)
41 1v43_A Sugar-binding transport 100.0 4.1E-45 1.4E-49 410.5 22.3 212 308-535 11-233 (372)
42 1g29_1 MALK, maltose transport 100.0 5.7E-45 2E-49 410.1 21.8 212 308-535 3-231 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 9.3E-45 3.2E-49 388.9 20.3 208 309-530 4-230 (250)
44 2pjz_A Hypothetical protein ST 100.0 5.7E-44 1.9E-48 384.6 21.2 207 309-534 2-216 (263)
45 2zu0_C Probable ATP-dependent 100.0 1.5E-43 5.1E-48 383.0 24.5 215 308-532 20-253 (267)
46 2nq2_C Hypothetical ABC transp 100.0 9.9E-44 3.4E-48 381.2 19.6 200 308-534 4-218 (253)
47 1sgw_A Putative ABC transporte 100.0 6.2E-43 2.1E-47 365.1 15.9 194 308-523 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 1.4E-39 5E-44 355.7 -16.9 235 244-545 39-275 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 1E-34 3.6E-39 346.4 16.4 198 308-533 357-563 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-34 3.5E-39 343.0 15.2 198 308-533 287-493 (538)
51 3ozx_A RNAse L inhibitor; ATP 100.0 3.1E-34 1.1E-38 338.1 15.7 199 308-533 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 1.1E-33 3.6E-38 348.2 16.0 204 308-527 671-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-33 1.6E-37 338.5 15.3 204 324-536 31-301 (670)
54 3j16_B RLI1P; ribosome recycli 100.0 3.2E-33 1.1E-37 333.0 13.3 197 312-534 350-560 (608)
55 3bk7_A ABC transporter ATP-bin 100.0 2.2E-33 7.6E-38 334.9 11.3 197 308-520 83-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 1.5E-31 5.1E-36 329.2 26.4 197 307-534 434-636 (986)
57 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-33 1.2E-37 330.0 10.1 196 309-520 21-234 (538)
58 3ux8_A Excinuclease ABC, A sub 100.0 2.2E-32 7.4E-37 332.8 13.5 205 324-538 335-645 (670)
59 3pih_A Uvrabc system protein A 100.0 4.7E-31 1.6E-35 324.7 17.8 207 325-541 598-910 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 6.3E-31 2.2E-35 313.2 15.0 197 313-523 82-300 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 2.6E-31 8.8E-36 313.2 8.2 192 313-521 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 2.6E-29 9E-34 306.9 17.4 212 307-536 501-830 (842)
63 4aby_A DNA repair protein RECN 100.0 6E-29 2.1E-33 285.7 18.9 201 325-526 49-381 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 2.9E-29 1E-33 306.3 16.5 214 308-539 629-948 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.7E-32 5.7E-37 317.2 -14.4 189 309-533 119-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.3E-28 4.3E-33 301.8 17.8 216 307-540 646-967 (993)
67 1e69_A Chromosome segregation 99.9 3E-26 1E-30 254.5 16.0 194 328-522 16-301 (322)
68 3b85_A Phosphate starvation-in 99.9 5.5E-28 1.9E-32 251.3 -5.7 157 324-520 13-170 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.2E-24 1.4E-28 241.0 18.5 83 442-524 275-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 1.9E-25 6.4E-30 225.2 3.3 149 329-514 1-168 (171)
71 1z6g_A Guanylate kinase; struc 99.9 3.8E-27 1.3E-31 247.1 -10.7 166 325-519 11-193 (218)
72 1ye8_A Protein THEP1, hypothet 99.9 3.8E-25 1.3E-29 224.4 0.9 147 339-524 2-159 (178)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.5E-25 5.3E-30 249.1 -6.1 141 311-522 151-292 (330)
74 1tq4_A IIGP1, interferon-induc 99.9 4.4E-25 1.5E-29 250.9 -10.4 167 324-514 36-247 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 3.5E-25 1.2E-29 254.7 -11.9 194 307-533 130-344 (438)
76 2vf7_A UVRA2, excinuclease ABC 99.8 1.8E-21 6E-26 238.1 13.7 100 435-534 367-476 (842)
77 3b9q_A Chloroplast SRP recepto 99.8 5.5E-23 1.9E-27 225.6 -1.4 176 327-523 90-285 (302)
78 3sop_A Neuronal-specific septi 99.8 4.7E-23 1.6E-27 222.7 -2.1 149 339-508 4-153 (270)
79 3aez_A Pantothenate kinase; tr 99.8 4.1E-24 1.4E-28 235.6 -10.9 145 304-479 39-209 (312)
80 2o5v_A DNA replication and rep 99.8 1E-20 3.5E-25 211.8 11.5 81 446-531 265-354 (359)
81 2og2_A Putative signal recogni 99.8 4.9E-22 1.7E-26 222.1 -1.3 173 328-522 148-341 (359)
82 1znw_A Guanylate kinase, GMP k 99.8 8.6E-23 2.9E-27 212.1 -7.3 167 324-518 9-202 (207)
83 2eyu_A Twitching motility prot 99.8 1.2E-23 4.3E-28 226.1 -14.3 174 325-506 15-241 (261)
84 2f1r_A Molybdopterin-guanine d 99.8 2.4E-22 8.4E-27 202.1 -7.8 111 338-468 3-125 (171)
85 2ewv_A Twitching motility prot 99.8 8.9E-23 3.1E-27 230.5 -13.9 175 325-507 126-353 (372)
86 2obl_A ESCN; ATPase, hydrolase 99.8 3.7E-21 1.3E-25 214.9 -1.4 194 308-532 45-254 (347)
87 1tf7_A KAIC; homohexamer, hexa 99.8 7.2E-21 2.5E-25 225.0 -2.0 170 323-522 24-212 (525)
88 2i3b_A HCR-ntpase, human cance 99.8 1.6E-21 5.6E-26 199.4 -6.7 159 337-526 1-169 (189)
89 3pih_A Uvrabc system protein A 99.8 4.6E-19 1.6E-23 218.5 10.5 168 354-535 385-562 (916)
90 4ad8_A DNA repair protein RECN 99.8 9.4E-19 3.2E-23 206.5 12.3 77 445-521 395-474 (517)
91 1cr0_A DNA primase/helicase; R 99.8 4.2E-19 1.4E-23 194.4 8.5 182 324-522 22-237 (296)
92 1lvg_A Guanylate kinase, GMP k 99.8 7.6E-22 2.6E-26 203.6 -13.8 158 335-519 2-173 (198)
93 3qkt_A DNA double-strand break 99.8 2.4E-17 8.3E-22 184.1 21.1 75 444-518 246-327 (339)
94 2o8b_B DNA mismatch repair pro 99.7 1.4E-18 4.7E-23 217.8 11.2 171 307-529 749-938 (1022)
95 2jeo_A Uridine-cytidine kinase 99.7 4.3E-20 1.5E-24 196.8 -3.4 172 322-532 10-186 (245)
96 2r6f_A Excinuclease ABC subuni 99.7 4.9E-18 1.7E-22 207.8 11.6 151 361-534 432-601 (972)
97 1lw7_A Transcriptional regulat 99.7 8.7E-20 3E-24 206.0 -6.6 163 326-518 157-342 (365)
98 1tf7_A KAIC; homohexamer, hexa 99.7 6.2E-18 2.1E-22 199.9 7.5 152 331-521 275-444 (525)
99 3asz_A Uridine kinase; cytidin 99.7 5.2E-20 1.8E-24 191.1 -9.3 139 334-505 3-161 (211)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3E-17 1E-21 160.8 10.9 88 435-522 41-142 (148)
101 4a74_A DNA repair and recombin 99.7 3.8E-18 1.3E-22 178.8 4.6 153 333-521 21-201 (231)
102 1pzn_A RAD51, DNA repair and r 99.7 1E-18 3.4E-23 195.8 -0.1 167 325-532 118-314 (349)
103 1w1w_A Structural maintenance 99.7 2E-17 6.9E-22 190.7 10.7 73 446-518 333-410 (430)
104 3szr_A Interferon-induced GTP- 99.7 5.3E-19 1.8E-23 211.9 -3.1 190 308-532 10-236 (608)
105 2ygr_A Uvrabc system protein A 99.7 6.3E-17 2.2E-21 198.8 14.6 134 396-534 466-618 (993)
106 2ehv_A Hypothetical protein PH 99.7 8.6E-19 2.9E-23 186.1 -1.8 179 309-519 7-207 (251)
107 3thx_A DNA mismatch repair pro 99.7 2.6E-17 8.8E-22 203.9 10.9 167 307-531 630-811 (934)
108 1ewq_A DNA mismatch repair pro 99.7 5.5E-18 1.9E-22 206.4 2.8 159 306-525 548-716 (765)
109 1rj9_A FTSY, signal recognitio 99.7 7E-17 2.4E-21 177.1 8.3 149 336-507 101-260 (304)
110 1pui_A ENGB, probable GTP-bind 99.7 2.6E-18 9E-23 177.4 -3.6 168 309-493 4-197 (210)
111 2qag_C Septin-7; cell cycle, c 99.6 9.4E-18 3.2E-22 191.4 -0.1 166 307-508 10-180 (418)
112 3jvv_A Twitching mobility prot 99.6 4.3E-17 1.5E-21 182.5 5.0 146 312-520 92-246 (356)
113 2qnr_A Septin-2, protein NEDD5 99.6 1.2E-17 4.2E-22 183.3 -0.9 161 312-506 2-168 (301)
114 2gza_A Type IV secretion syste 99.6 2.3E-18 7.9E-23 193.8 -7.4 221 233-460 52-301 (361)
115 3kta_B Chromosome segregation 99.6 1.2E-15 3.9E-20 153.5 10.9 79 444-522 62-146 (173)
116 1odf_A YGR205W, hypothetical 3 99.6 9.4E-18 3.2E-22 182.9 -6.1 128 336-481 30-169 (290)
117 2w0m_A SSO2452; RECA, SSPF, un 99.6 5.4E-16 1.8E-20 162.3 5.8 166 324-521 9-193 (235)
118 3thx_B DNA mismatch repair pro 99.6 7.2E-16 2.5E-20 190.4 6.0 160 307-522 639-814 (918)
119 1s96_A Guanylate kinase, GMP k 99.6 1.6E-16 5.5E-21 166.2 -0.5 143 332-533 11-160 (219)
120 1wb9_A DNA mismatch repair pro 99.5 9.6E-16 3.3E-20 187.8 3.5 166 307-525 576-750 (800)
121 2qag_B Septin-6, protein NEDD5 99.5 1.6E-15 5.6E-20 172.2 2.4 179 309-503 17-217 (427)
122 2cvh_A DNA repair and recombin 99.5 1.3E-14 4.4E-19 150.7 7.9 152 324-520 6-185 (220)
123 1nlf_A Regulatory protein REPA 99.5 2.4E-14 8.1E-19 155.3 9.1 151 333-508 26-184 (279)
124 3c8u_A Fructokinase; YP_612366 99.5 7.6E-17 2.6E-21 167.3 -10.6 119 334-474 19-140 (208)
125 1nij_A Hypothetical protein YJ 99.5 6.6E-16 2.3E-20 170.9 -3.9 150 337-505 4-189 (318)
126 1zp6_A Hypothetical protein AT 99.5 3.2E-16 1.1E-20 159.6 -6.1 138 333-491 5-146 (191)
127 3qf4_B Uncharacterized ABC tra 99.5 1.4E-12 5E-17 156.2 23.7 184 714-903 23-206 (598)
128 1n0w_A DNA repair protein RAD5 99.5 6.2E-14 2.1E-18 147.9 9.1 146 333-520 20-209 (243)
129 2qm8_A GTPase/ATPase; G protei 99.4 7.2E-16 2.5E-20 171.8 -10.2 176 310-492 31-258 (337)
130 3qf4_A ABC transporter, ATP-bi 99.4 2.7E-12 9.4E-17 153.4 19.3 179 719-903 14-192 (587)
131 2yhs_A FTSY, cell division pro 99.4 2.4E-13 8.2E-18 156.2 8.4 152 327-503 283-447 (503)
132 3b5x_A Lipid A export ATP-bind 99.4 2.3E-11 7.7E-16 145.5 25.6 181 716-903 13-194 (582)
133 2bdt_A BH3686; alpha-beta prot 99.4 3E-16 1E-20 159.9 -14.5 166 337-532 2-183 (189)
134 2yl4_A ATP-binding cassette SU 99.4 1.3E-11 4.6E-16 147.8 23.0 186 716-904 7-192 (595)
135 4a82_A Cystic fibrosis transme 99.4 6.8E-12 2.3E-16 149.8 19.5 186 717-904 3-191 (578)
136 3b60_A Lipid A export ATP-bind 99.4 2.7E-11 9.3E-16 144.8 23.6 183 715-904 12-195 (582)
137 1htw_A HI0065; nucleotide-bind 99.3 5.9E-14 2E-18 139.1 -2.0 87 312-407 11-97 (158)
138 2bbw_A Adenylate kinase 4, AK4 99.3 4.3E-14 1.5E-18 150.3 -3.7 147 336-494 26-198 (246)
139 3e70_C DPA, signal recognition 99.3 1.5E-12 5.1E-17 144.1 8.1 145 333-504 125-278 (328)
140 1p9r_A General secretion pathw 99.3 5.1E-15 1.8E-19 168.9 -12.5 127 326-469 158-314 (418)
141 3lda_A DNA repair protein RAD5 99.3 1.2E-12 4.2E-17 148.5 6.8 147 333-521 174-364 (400)
142 3auy_A DNA double-strand break 99.3 3.5E-12 1.2E-16 144.0 10.4 74 445-518 279-359 (371)
143 1sxj_E Activator 1 40 kDa subu 99.3 1.1E-12 3.7E-17 146.6 5.2 137 339-507 38-176 (354)
144 2oap_1 GSPE-2, type II secreti 99.3 1.5E-14 5.2E-19 169.3 -10.9 173 325-512 248-458 (511)
145 2kjq_A DNAA-related protein; s 99.2 9E-12 3.1E-16 122.2 7.2 91 326-504 30-124 (149)
146 2rcn_A Probable GTPase ENGC; Y 99.2 2.7E-12 9.3E-17 143.0 3.6 123 325-462 204-329 (358)
147 3ec2_A DNA replication protein 99.2 1.1E-11 3.8E-16 124.9 5.9 111 331-506 32-144 (180)
148 1sq5_A Pantothenate kinase; P- 99.2 3.8E-13 1.3E-17 148.1 -6.7 140 306-479 35-199 (308)
149 2x8a_A Nuclear valosin-contain 99.1 2.2E-13 7.5E-18 147.4 -9.9 142 325-489 34-190 (274)
150 2yv5_A YJEQ protein; hydrolase 99.1 4.2E-12 1.5E-16 139.2 0.0 113 333-459 161-300 (302)
151 3lnc_A Guanylate kinase, GMP k 99.1 1.5E-13 5.2E-18 144.6 -13.9 136 325-492 15-176 (231)
152 1u0l_A Probable GTPase ENGC; p 99.0 4E-11 1.4E-15 131.5 2.0 103 332-435 164-291 (301)
153 1cke_A CK, MSSA, protein (cyti 99.0 8E-12 2.7E-16 130.5 -3.5 127 337-474 5-150 (227)
154 1udx_A The GTP-binding protein 99.0 1.9E-11 6.4E-16 139.3 -1.1 153 327-503 147-306 (416)
155 3tr0_A Guanylate kinase, GMP k 99.0 3.9E-10 1.3E-14 115.6 5.7 72 331-406 1-73 (205)
156 1ls1_A Signal recognition part 98.9 1.2E-09 4.1E-14 119.2 9.0 135 309-495 77-212 (295)
157 1vma_A Cell division protein F 98.9 3.2E-10 1.1E-14 124.2 3.5 111 330-491 97-210 (306)
158 4e22_A Cytidylate kinase; P-lo 98.9 1.6E-10 5.4E-15 123.4 0.9 102 325-435 18-137 (252)
159 2px0_A Flagellar biosynthesis 98.9 9.2E-10 3.2E-14 120.1 6.9 138 335-524 103-246 (296)
160 3euj_A Chromosome partition pr 98.9 3.7E-10 1.3E-14 130.3 3.9 65 310-380 8-72 (483)
161 1t9h_A YLOQ, probable GTPase E 98.9 2.2E-10 7.4E-15 125.3 -0.3 73 332-406 168-248 (307)
162 3a00_A Guanylate kinase, GMP k 98.8 1.4E-09 4.7E-14 110.4 3.7 127 337-472 1-169 (186)
163 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.5E-12 8.7E-17 145.1 -19.2 170 333-529 16-209 (392)
164 1iy2_A ATP-dependent metallopr 98.8 1.9E-11 6.5E-16 132.3 -12.4 131 310-467 51-190 (278)
165 2zr9_A Protein RECA, recombina 98.7 2.2E-08 7.5E-13 111.7 10.7 151 325-527 47-237 (349)
166 1in4_A RUVB, holliday junction 98.7 5.5E-11 1.9E-15 132.3 -10.8 153 312-493 22-193 (334)
167 2dr3_A UPF0273 protein PH0284; 98.7 3.4E-09 1.2E-13 111.5 2.7 168 324-519 9-196 (247)
168 2ius_A DNA translocase FTSK; n 98.7 8E-10 2.7E-14 128.4 -2.5 161 329-506 159-343 (512)
169 1qhl_A Protein (cell division 98.7 6.1E-10 2.1E-14 116.6 -4.0 75 308-393 9-91 (227)
170 1oix_A RAS-related protein RAB 98.7 1.9E-09 6.5E-14 109.5 -1.0 141 339-491 31-188 (191)
171 2r6a_A DNAB helicase, replicat 98.6 4E-08 1.4E-12 113.7 9.2 178 324-522 190-401 (454)
172 3ney_A 55 kDa erythrocyte memb 98.6 2.4E-09 8.1E-14 109.5 -1.1 83 331-421 13-108 (197)
173 3k1j_A LON protease, ATP-depen 98.6 1.1E-09 3.9E-14 131.3 -5.0 156 324-491 47-227 (604)
174 1ixz_A ATP-dependent metallopr 98.6 2E-10 6.7E-15 122.4 -10.5 137 309-474 26-171 (254)
175 2dy1_A Elongation factor G; tr 98.6 1.2E-08 4.2E-13 123.3 3.7 132 331-507 3-138 (665)
176 1svm_A Large T antigen; AAA+ f 98.5 1.4E-09 4.7E-14 122.4 -7.8 136 325-475 157-312 (377)
177 1kgd_A CASK, peripheral plasma 98.5 1.1E-08 3.7E-13 103.1 -1.0 71 335-409 3-84 (180)
178 2f9l_A RAB11B, member RAS onco 98.4 6E-08 2E-12 98.8 2.5 35 455-491 130-164 (199)
179 2qt1_A Nicotinamide riboside k 98.4 6.2E-08 2.1E-12 99.6 2.4 105 330-474 14-119 (207)
180 2ce7_A Cell division protein F 98.3 7.2E-07 2.5E-11 103.2 8.2 114 325-508 39-167 (476)
181 2qtf_A Protein HFLX, GTP-bindi 98.3 1.5E-07 5.2E-12 105.6 1.6 141 339-492 181-351 (364)
182 3uie_A Adenylyl-sulfate kinase 98.3 3.1E-08 1.1E-12 101.4 -3.9 53 323-376 11-65 (200)
183 4eun_A Thermoresistant glucoki 98.3 1.2E-07 4.2E-12 97.0 0.5 60 331-395 23-82 (200)
184 3nwj_A ATSK2; P loop, shikimat 98.3 1E-07 3.4E-12 101.3 -0.4 52 308-361 17-72 (250)
185 2j41_A Guanylate kinase; GMP, 98.2 3.2E-07 1.1E-11 93.7 3.0 61 332-395 1-61 (207)
186 2dhr_A FTSH; AAA+ protein, hex 98.2 3.7E-08 1.3E-12 114.6 -5.7 138 310-476 42-188 (499)
187 1zu4_A FTSY; GTPase, signal re 98.2 3.1E-07 1E-11 101.2 1.8 69 327-395 95-173 (320)
188 3cr8_A Sulfate adenylyltranfer 98.2 6.6E-08 2.2E-12 113.9 -4.4 62 332-393 364-437 (552)
189 3vaa_A Shikimate kinase, SK; s 98.1 8E-07 2.7E-11 90.8 3.5 45 317-361 5-49 (199)
190 3t34_A Dynamin-related protein 98.1 4.5E-07 1.5E-11 101.6 0.7 46 325-373 25-72 (360)
191 3hr8_A Protein RECA; alpha and 98.1 1.1E-05 3.8E-10 89.8 11.5 69 325-396 47-118 (356)
192 3tqc_A Pantothenate kinase; bi 98.1 1.3E-07 4.6E-12 103.8 -4.2 123 325-479 74-211 (321)
193 1jjv_A Dephospho-COA kinase; P 98.0 1.2E-06 4E-11 89.8 1.4 125 339-518 4-131 (206)
194 2xau_A PRE-mRNA-splicing facto 98.0 7.5E-06 2.6E-10 100.6 8.5 66 445-510 189-257 (773)
195 3kta_A Chromosome segregation 98.0 1.1E-06 3.8E-11 88.0 0.9 67 328-395 18-90 (182)
196 2e87_A Hypothetical protein PH 98.0 9.6E-06 3.3E-10 90.7 8.5 60 445-505 230-292 (357)
197 2z43_A DNA repair and recombin 98.0 4.4E-06 1.5E-10 92.2 5.7 28 333-360 103-130 (324)
198 2vp4_A Deoxynucleoside kinase; 98.0 2.9E-07 1E-11 96.4 -3.9 64 330-397 13-86 (230)
199 3tau_A Guanylate kinase, GMP k 98.0 9.7E-07 3.3E-11 91.0 -0.1 67 335-404 6-83 (208)
200 4a1f_A DNAB helicase, replicat 98.0 1.7E-05 5.8E-10 87.7 9.8 126 325-501 34-162 (338)
201 3kl4_A SRP54, signal recogniti 97.9 1.8E-05 6.1E-10 90.3 9.3 40 336-375 96-135 (433)
202 3ice_A Transcription terminati 97.9 2.1E-06 7.3E-11 95.3 0.7 55 305-361 130-198 (422)
203 2eyu_A Twitching motility prot 97.9 4.4E-06 1.5E-10 89.3 2.5 60 454-519 88-147 (261)
204 2ffh_A Protein (FFH); SRP54, s 97.8 1.3E-05 4.3E-10 91.3 5.3 148 328-503 91-246 (425)
205 1knq_A Gluconate kinase; ALFA/ 97.8 3.7E-06 1.3E-10 83.6 0.7 38 335-376 6-43 (175)
206 3m6a_A ATP-dependent protease 97.7 2.9E-06 9.9E-11 100.3 -1.4 58 311-372 86-143 (543)
207 1rz3_A Hypothetical protein rb 97.7 7.5E-06 2.6E-10 83.7 1.0 48 333-380 18-65 (201)
208 1fnn_A CDC6P, cell division co 97.7 0.00012 4E-09 82.0 10.5 45 463-508 124-172 (389)
209 1v5w_A DMC1, meiotic recombina 97.7 2.4E-05 8.3E-10 86.9 4.7 28 333-360 118-145 (343)
210 1sxj_C Activator 1 40 kDa subu 97.5 1.7E-05 5.8E-10 87.9 0.9 43 324-366 31-75 (340)
211 2pez_A Bifunctional 3'-phospho 97.4 1.8E-05 6E-10 79.1 -1.1 40 335-375 3-44 (179)
212 2z4s_A Chromosomal replication 97.3 0.00019 6.6E-09 82.4 6.4 66 464-529 194-264 (440)
213 3b9p_A CG5977-PA, isoform A; A 97.3 0.00026 8.8E-09 76.5 7.1 27 335-361 52-78 (297)
214 1uf9_A TT1252 protein; P-loop, 97.3 2.9E-06 1E-10 86.2 -8.0 33 337-374 8-40 (203)
215 3bh0_A DNAB-like replicative h 97.3 0.00018 6.2E-09 78.9 5.7 110 324-477 55-164 (315)
216 1ypw_A Transitional endoplasmi 97.3 4.2E-05 1.4E-09 94.5 0.3 32 332-363 233-264 (806)
217 1ega_A Protein (GTP-binding pr 97.3 8.8E-05 3E-09 80.9 2.6 24 337-360 8-31 (301)
218 1mky_A Probable GTP-binding pr 97.2 0.00015 5E-09 83.4 4.4 60 338-397 181-252 (439)
219 3lxx_A GTPase IMAP family memb 97.2 0.0015 5.1E-08 68.1 11.9 28 339-366 31-58 (239)
220 4eaq_A DTMP kinase, thymidylat 97.2 0.00011 3.6E-09 76.9 2.4 43 327-370 13-58 (229)
221 2p67_A LAO/AO transport system 97.2 4.3E-05 1.5E-09 84.8 -0.7 51 325-375 44-94 (341)
222 3r20_A Cytidylate kinase; stru 97.2 8.3E-05 2.9E-09 77.8 1.5 69 337-405 9-95 (233)
223 2qby_A CDC6 homolog 1, cell di 97.2 8.1E-05 2.8E-09 82.9 1.1 30 335-364 43-72 (386)
224 1f6b_A SAR1; gtpases, N-termin 97.1 0.00011 3.8E-09 74.5 1.7 42 315-359 6-47 (198)
225 3llm_A ATP-dependent RNA helic 97.1 0.00041 1.4E-08 72.5 6.1 132 334-500 73-213 (235)
226 1lv7_A FTSH; alpha/beta domain 97.1 0.0013 4.5E-08 69.4 10.1 44 327-374 37-80 (257)
227 1u94_A RECA protein, recombina 97.1 0.0015 5.1E-08 72.8 10.5 35 325-360 49-86 (356)
228 1m7g_A Adenylylsulfate kinase; 97.1 6.7E-05 2.3E-09 77.1 -0.5 42 332-373 20-63 (211)
229 1kag_A SKI, shikimate kinase I 97.1 0.00021 7.2E-09 70.5 2.9 33 336-372 3-35 (173)
230 2qor_A Guanylate kinase; phosp 97.0 0.00011 3.9E-09 75.0 0.6 29 334-362 9-37 (204)
231 2www_A Methylmalonic aciduria 97.0 0.00015 5E-09 80.8 1.2 42 336-377 73-114 (349)
232 2w58_A DNAI, primosome compone 96.9 0.00037 1.3E-08 70.7 3.4 26 338-363 55-80 (202)
233 1l8q_A Chromosomal replication 96.9 0.00065 2.2E-08 74.4 5.5 28 336-363 36-63 (324)
234 1m2o_B GTP-binding protein SAR 96.9 0.0005 1.7E-08 69.0 4.0 33 326-359 13-45 (190)
235 3bos_A Putative DNA replicatio 96.9 0.00046 1.6E-08 71.3 3.5 27 336-362 51-77 (242)
236 3cf0_A Transitional endoplasmi 96.8 0.0016 5.6E-08 70.6 7.7 31 332-362 44-74 (301)
237 1sxj_D Activator 1 41 kDa subu 96.8 0.00025 8.4E-09 78.3 1.1 42 464-506 133-174 (353)
238 4fcw_A Chaperone protein CLPB; 96.8 0.00087 3E-08 72.6 5.3 31 338-368 48-78 (311)
239 2gj8_A MNME, tRNA modification 96.8 0.00069 2.3E-08 66.9 3.9 27 335-361 2-28 (172)
240 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0008 2.8E-08 65.3 3.9 30 328-358 15-44 (149)
241 3h4m_A Proteasome-activating n 96.7 0.0023 7.9E-08 68.4 7.5 28 334-361 48-75 (285)
242 1j8m_F SRP54, signal recogniti 96.7 0.00027 9.1E-09 76.8 -0.2 49 328-377 89-138 (297)
243 1y63_A LMAJ004144AAA protein; 96.5 0.0011 3.8E-08 66.4 3.3 32 329-360 2-33 (184)
244 2i1q_A DNA repair and recombin 96.4 0.0014 4.9E-08 71.7 3.9 27 333-359 94-120 (322)
245 4dcu_A GTP-binding protein ENG 96.4 0.0027 9.1E-08 73.2 5.9 55 451-508 89-144 (456)
246 2qag_A Septin-2, protein NEDD5 96.4 0.00033 1.1E-08 78.3 -1.6 58 306-372 15-72 (361)
247 2yvu_A Probable adenylyl-sulfa 96.4 0.001 3.4E-08 66.6 2.0 40 333-372 9-49 (186)
248 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0016 5.5E-08 73.2 3.8 41 333-373 18-69 (396)
249 2jaq_A Deoxyguanosine kinase; 96.4 0.0002 6.7E-09 72.5 -3.4 22 339-360 2-23 (205)
250 3n70_A Transport activator; si 96.3 0.0064 2.2E-07 58.2 7.4 31 335-365 22-52 (145)
251 2p5t_B PEZT; postsegregational 96.3 0.00099 3.4E-08 70.4 1.7 41 333-375 28-68 (253)
252 2wji_A Ferrous iron transport 96.3 0.0031 1.1E-07 61.5 5.1 23 339-361 5-27 (165)
253 1lw7_A Transcriptional regulat 96.3 7.3E-05 2.5E-09 83.7 -7.9 34 441-474 291-329 (365)
254 2q6t_A DNAB replication FORK h 96.2 0.0069 2.4E-07 69.5 8.1 108 325-477 188-295 (444)
255 3t61_A Gluconokinase; PSI-biol 96.2 0.0011 3.6E-08 67.3 1.2 32 337-372 18-49 (202)
256 3dm5_A SRP54, signal recogniti 96.2 0.018 6.2E-07 65.6 11.3 33 336-368 99-131 (443)
257 3lxw_A GTPase IMAP family memb 96.2 0.008 2.7E-07 63.2 7.9 23 339-361 23-45 (247)
258 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8E-08 63.3 3.5 22 339-360 9-30 (188)
259 1njg_A DNA polymerase III subu 96.1 0.0055 1.9E-07 62.6 6.0 43 463-506 125-167 (250)
260 1np6_A Molybdopterin-guanine d 96.1 0.0019 6.6E-08 64.3 2.3 37 337-373 6-45 (174)
261 3qks_A DNA double-strand break 96.0 0.0038 1.3E-07 63.7 3.9 30 328-358 15-44 (203)
262 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.027 9.2E-07 59.0 10.5 26 336-361 38-63 (262)
263 1ex7_A Guanylate kinase; subst 95.9 0.0024 8.2E-08 64.3 2.1 47 339-387 3-62 (186)
264 2zej_A Dardarin, leucine-rich 95.9 0.0038 1.3E-07 62.0 3.2 26 339-364 4-29 (184)
265 2if2_A Dephospho-COA kinase; a 95.8 0.0037 1.3E-07 63.2 3.0 21 339-359 3-23 (204)
266 2ga8_A Hypothetical 39.9 kDa p 95.8 0.002 6.9E-08 71.1 0.8 37 325-361 10-48 (359)
267 2ewv_A Twitching motility prot 95.7 0.0031 1.1E-07 70.7 2.1 59 454-518 199-257 (372)
268 3d8b_A Fidgetin-like protein 1 95.7 0.026 9E-07 62.6 9.6 27 335-361 115-141 (357)
269 3cm0_A Adenylate kinase; ATP-b 95.6 0.0049 1.7E-07 61.2 2.9 26 335-360 2-27 (186)
270 2v1u_A Cell division control p 95.6 0.0042 1.4E-07 69.0 2.6 28 335-362 42-69 (387)
271 3uk6_A RUVB-like 2; hexameric 95.6 0.017 5.7E-07 64.0 7.4 38 335-372 68-105 (368)
272 3ihw_A Centg3; RAS, centaurin, 95.6 0.011 3.6E-07 58.9 5.2 34 339-372 22-64 (184)
273 1xp8_A RECA protein, recombina 95.6 0.037 1.3E-06 61.7 10.0 27 333-359 70-96 (366)
274 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0056 1.9E-07 68.9 3.2 48 323-371 19-69 (392)
275 1qhx_A CPT, protein (chloramph 95.5 0.0072 2.5E-07 59.5 3.7 27 336-362 2-28 (178)
276 3syl_A Protein CBBX; photosynt 95.5 0.052 1.8E-06 58.4 10.8 25 337-361 67-91 (309)
277 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.093 3.2E-06 57.3 12.7 27 335-361 43-69 (322)
278 3bgw_A DNAB-like replicative h 95.5 0.021 7.1E-07 65.5 7.7 105 326-474 186-290 (444)
279 1gvn_B Zeta; postsegregational 95.3 0.0087 3E-07 64.5 3.7 35 336-372 32-66 (287)
280 3kb2_A SPBC2 prophage-derived 95.3 0.0081 2.8E-07 58.6 3.1 23 339-361 3-25 (173)
281 1jal_A YCHF protein; nucleotid 95.3 0.013 4.6E-07 65.0 5.1 36 337-372 2-48 (363)
282 1gtv_A TMK, thymidylate kinase 95.2 0.0024 8.3E-08 65.0 -1.0 26 339-364 2-27 (214)
283 2v54_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 59.6 3.9 27 335-361 2-28 (204)
284 1kht_A Adenylate kinase; phosp 95.2 0.0099 3.4E-07 59.0 3.5 26 336-361 2-27 (192)
285 1q3t_A Cytidylate kinase; nucl 95.2 0.0098 3.4E-07 61.9 3.5 26 335-360 14-39 (236)
286 2chg_A Replication factor C sm 95.2 0.028 9.5E-07 56.5 6.9 42 463-505 101-142 (226)
287 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.025 8.7E-07 61.5 6.7 28 332-359 118-145 (331)
288 3co5_A Putative two-component 95.1 0.038 1.3E-06 52.7 7.2 27 335-361 25-51 (143)
289 3trf_A Shikimate kinase, SK; a 95.1 0.011 3.8E-07 58.6 3.4 26 336-361 4-29 (185)
290 3t15_A Ribulose bisphosphate c 95.0 0.026 9E-07 60.8 6.5 25 337-361 36-60 (293)
291 1fzq_A ADP-ribosylation factor 95.0 0.0094 3.2E-07 59.0 2.7 23 338-360 17-39 (181)
292 2b8t_A Thymidine kinase; deoxy 95.0 0.016 5.4E-07 60.1 4.4 51 464-518 89-150 (223)
293 3cmw_A Protein RECA, recombina 95.0 0.053 1.8E-06 71.1 10.1 39 334-372 729-768 (1706)
294 3lw7_A Adenylate kinase relate 95.0 0.011 3.9E-07 57.3 3.1 19 339-357 3-21 (179)
295 2rhm_A Putative kinase; P-loop 95.0 0.01 3.5E-07 59.1 2.8 27 335-361 3-29 (193)
296 1vht_A Dephospho-COA kinase; s 94.9 0.014 4.8E-07 59.7 3.7 32 336-372 3-34 (218)
297 3iij_A Coilin-interacting nucl 94.9 0.0096 3.3E-07 58.9 2.3 27 335-361 9-35 (180)
298 2c95_A Adenylate kinase 1; tra 94.7 0.015 5E-07 58.1 3.1 27 335-361 7-33 (196)
299 1ko7_A HPR kinase/phosphatase; 94.6 0.012 3.9E-07 64.1 2.4 34 325-359 133-166 (314)
300 3zvl_A Bifunctional polynucleo 94.6 0.066 2.3E-06 60.7 8.7 28 333-360 254-281 (416)
301 2wwf_A Thymidilate kinase, put 94.6 0.016 5.4E-07 58.7 3.1 27 335-361 8-34 (212)
302 2plr_A DTMP kinase, probable t 94.6 0.017 5.9E-07 58.3 3.4 28 336-363 3-30 (213)
303 1xjc_A MOBB protein homolog; s 94.5 0.012 4.1E-07 58.2 2.0 26 338-363 5-30 (169)
304 2qp9_X Vacuolar protein sortin 94.5 0.081 2.8E-06 58.6 8.8 27 335-361 82-108 (355)
305 1nn5_A Similar to deoxythymidy 94.5 0.018 6E-07 58.4 3.1 28 334-361 6-33 (215)
306 1via_A Shikimate kinase; struc 94.4 0.017 5.8E-07 56.9 2.8 23 339-361 6-28 (175)
307 2ze6_A Isopentenyl transferase 94.4 0.017 5.8E-07 60.9 2.9 24 338-361 2-25 (253)
308 2lkc_A Translation initiation 94.4 0.043 1.5E-06 53.3 5.6 25 336-360 7-31 (178)
309 1ly1_A Polynucleotide kinase; 94.3 0.02 7E-07 56.1 3.2 31 338-371 3-33 (181)
310 1jr3_A DNA polymerase III subu 94.3 0.068 2.3E-06 59.0 7.6 43 463-506 118-160 (373)
311 1tev_A UMP-CMP kinase; ploop, 94.2 0.022 7.5E-07 56.6 3.2 26 336-361 2-27 (196)
312 2vli_A Antibiotic resistance p 94.1 0.018 6.1E-07 56.8 2.3 27 335-361 3-29 (183)
313 3auy_A DNA double-strand break 94.1 0.022 7.5E-07 63.6 3.3 31 327-358 16-46 (371)
314 2bwj_A Adenylate kinase 5; pho 94.1 0.017 6E-07 57.7 2.2 28 334-361 9-36 (199)
315 2erx_A GTP-binding protein DI- 94.1 0.042 1.4E-06 52.8 4.9 21 339-359 5-25 (172)
316 1aky_A Adenylate kinase; ATP:A 94.0 0.028 9.5E-07 57.6 3.7 27 335-361 2-28 (220)
317 3u61_B DNA polymerase accessor 94.0 0.076 2.6E-06 57.6 7.4 42 464-506 105-147 (324)
318 3io5_A Recombination and repai 94.0 0.06 2.1E-06 58.4 6.2 25 334-359 26-51 (333)
319 3cbq_A GTP-binding protein REM 94.0 0.022 7.4E-07 57.2 2.6 22 339-360 25-46 (195)
320 4b4t_L 26S protease subunit RP 93.8 0.19 6.3E-06 57.2 10.2 30 333-362 211-240 (437)
321 1nks_A Adenylate kinase; therm 93.8 0.025 8.6E-07 56.0 2.7 24 339-362 3-26 (194)
322 1z2a_A RAS-related protein RAB 93.8 0.03 1E-06 53.7 3.1 22 339-360 7-28 (168)
323 2cdn_A Adenylate kinase; phosp 93.7 0.036 1.2E-06 55.8 3.7 26 336-361 19-44 (201)
324 2zan_A Vacuolar protein sortin 93.7 0.21 7.2E-06 57.1 10.5 27 335-361 165-191 (444)
325 1z0j_A RAB-22, RAS-related pro 93.7 0.046 1.6E-06 52.5 4.2 23 339-361 8-30 (170)
326 3k53_A Ferrous iron transport 93.6 0.027 9.3E-07 59.8 2.7 24 339-362 5-28 (271)
327 2ged_A SR-beta, signal recogni 93.6 0.032 1.1E-06 55.2 3.1 24 338-361 49-72 (193)
328 2z0h_A DTMP kinase, thymidylat 93.6 0.033 1.1E-06 55.5 3.2 23 339-361 2-24 (197)
329 2nzj_A GTP-binding protein REM 93.6 0.035 1.2E-06 53.7 3.3 23 339-361 6-28 (175)
330 1kao_A RAP2A; GTP-binding prot 93.6 0.034 1.2E-06 53.1 3.1 21 339-359 5-25 (167)
331 1zd8_A GTP:AMP phosphotransfer 93.6 0.031 1.1E-06 57.5 3.0 27 335-361 5-31 (227)
332 2dby_A GTP-binding protein; GD 93.6 0.028 9.5E-07 62.7 2.7 23 339-361 3-25 (368)
333 1hqc_A RUVB; extended AAA-ATPa 93.6 0.18 6E-06 54.5 9.1 26 336-361 37-62 (324)
334 1ukz_A Uridylate kinase; trans 93.5 0.036 1.2E-06 55.8 3.3 26 336-361 14-39 (203)
335 3vfd_A Spastin; ATPase, microt 93.5 0.25 8.7E-06 55.2 10.7 27 335-361 146-172 (389)
336 3pxi_A Negative regulator of g 93.5 0.093 3.2E-06 64.2 7.6 23 339-361 523-545 (758)
337 4b4t_J 26S protease regulatory 93.5 0.16 5.4E-06 57.1 8.7 28 334-361 179-206 (405)
338 3fb4_A Adenylate kinase; psych 93.5 0.035 1.2E-06 56.5 3.2 23 339-361 2-24 (216)
339 2dyk_A GTP-binding protein; GT 93.5 0.036 1.2E-06 52.8 3.1 23 339-361 3-25 (161)
340 3q72_A GTP-binding protein RAD 93.5 0.029 9.8E-07 53.9 2.4 23 339-361 4-26 (166)
341 3q85_A GTP-binding protein REM 93.5 0.038 1.3E-06 53.2 3.2 23 339-361 4-26 (169)
342 1u8z_A RAS-related protein RAL 93.4 0.037 1.3E-06 52.9 3.1 22 339-360 6-27 (168)
343 2ew1_A RAS-related protein RAB 93.4 0.056 1.9E-06 54.5 4.6 21 339-359 28-48 (201)
344 2r8r_A Sensor protein; KDPD, P 93.4 0.028 9.5E-07 58.1 2.3 43 461-503 81-125 (228)
345 2iyv_A Shikimate kinase, SK; t 93.4 0.034 1.2E-06 55.0 2.9 24 338-361 3-26 (184)
346 3ake_A Cytidylate kinase; CMP 93.4 0.036 1.2E-06 55.7 3.1 23 339-361 4-26 (208)
347 1zak_A Adenylate kinase; ATP:A 93.4 0.032 1.1E-06 57.2 2.7 26 336-361 4-29 (222)
348 1e6c_A Shikimate kinase; phosp 93.4 0.037 1.3E-06 53.9 3.0 24 338-361 3-26 (173)
349 1ksh_A ARF-like protein 2; sma 93.4 0.076 2.6E-06 52.1 5.3 25 336-360 17-41 (186)
350 3iby_A Ferrous iron transport 93.4 0.035 1.2E-06 58.6 3.0 23 339-361 3-25 (256)
351 1c1y_A RAS-related protein RAP 93.4 0.039 1.3E-06 52.9 3.1 21 339-359 5-25 (167)
352 1z08_A RAS-related protein RAB 93.3 0.039 1.3E-06 53.1 3.1 22 339-360 8-29 (170)
353 2ce2_X GTPase HRAS; signaling 93.3 0.034 1.1E-06 53.0 2.6 22 339-360 5-26 (166)
354 1ek0_A Protein (GTP-binding pr 93.3 0.04 1.4E-06 52.8 3.1 22 339-360 5-26 (170)
355 1ky3_A GTP-binding protein YPT 93.3 0.041 1.4E-06 53.6 3.1 22 339-360 10-31 (182)
356 2oil_A CATX-8, RAS-related pro 93.3 0.051 1.8E-06 53.8 3.9 22 339-360 27-48 (193)
357 1zuh_A Shikimate kinase; alpha 93.3 0.043 1.5E-06 53.4 3.3 24 337-360 7-30 (168)
358 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.041 1.4E-06 53.4 3.1 22 339-360 9-30 (177)
359 3dl0_A Adenylate kinase; phosp 93.2 0.041 1.4E-06 56.0 3.2 23 339-361 2-24 (216)
360 2pbr_A DTMP kinase, thymidylat 93.2 0.043 1.5E-06 54.5 3.2 23 339-361 2-24 (195)
361 2pt5_A Shikimate kinase, SK; a 93.2 0.044 1.5E-06 53.2 3.2 22 339-360 2-23 (168)
362 3tw8_B RAS-related protein RAB 93.2 0.04 1.4E-06 53.5 2.9 22 339-360 11-32 (181)
363 3tlx_A Adenylate kinase 2; str 93.2 0.045 1.5E-06 57.3 3.4 26 336-361 28-53 (243)
364 1g16_A RAS-related protein SEC 93.2 0.037 1.3E-06 53.2 2.6 22 339-360 5-26 (170)
365 3b1v_A Ferrous iron uptake tra 93.1 0.044 1.5E-06 58.5 3.3 23 339-361 5-27 (272)
366 3t1o_A Gliding protein MGLA; G 93.1 0.046 1.6E-06 53.9 3.3 25 339-363 16-40 (198)
367 3a8t_A Adenylate isopentenyltr 93.1 0.051 1.7E-06 59.6 3.8 28 335-362 38-65 (339)
368 1a7j_A Phosphoribulokinase; tr 93.1 0.027 9.4E-07 60.7 1.6 26 336-361 4-29 (290)
369 1r2q_A RAS-related protein RAB 93.1 0.045 1.6E-06 52.5 3.1 21 339-359 8-28 (170)
370 1qf9_A UMP/CMP kinase, protein 93.0 0.036 1.2E-06 54.8 2.4 25 337-361 6-30 (194)
371 2fn4_A P23, RAS-related protei 93.0 0.04 1.4E-06 53.6 2.6 22 339-360 11-32 (181)
372 3cmu_A Protein RECA, recombina 93.0 0.22 7.7E-06 66.1 10.2 48 325-372 369-419 (2050)
373 1svi_A GTP-binding protein YSX 93.0 0.039 1.3E-06 54.7 2.5 24 337-360 23-46 (195)
374 3clv_A RAB5 protein, putative; 93.0 0.047 1.6E-06 54.0 3.1 22 339-360 9-30 (208)
375 2grj_A Dephospho-COA kinase; T 93.0 0.048 1.6E-06 55.0 3.2 23 338-360 13-35 (192)
376 4dsu_A GTPase KRAS, isoform 2B 92.9 0.048 1.7E-06 53.4 3.1 22 339-360 6-27 (189)
377 2bcg_Y Protein YP2, GTP-bindin 92.9 0.074 2.5E-06 53.3 4.6 22 339-360 10-31 (206)
378 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.05 1.7E-06 57.5 3.4 25 336-360 3-27 (260)
379 3pqc_A Probable GTP-binding pr 92.9 0.041 1.4E-06 54.3 2.5 23 339-361 25-47 (195)
380 4b4t_K 26S protease regulatory 92.9 0.28 9.4E-06 55.7 9.6 29 333-361 202-230 (428)
381 3pfi_A Holliday junction ATP-d 92.9 0.27 9.1E-06 53.5 9.3 24 338-361 56-79 (338)
382 3bc1_A RAS-related protein RAB 92.9 0.05 1.7E-06 53.5 3.1 21 339-359 13-33 (195)
383 2hxs_A RAB-26, RAS-related pro 92.8 0.055 1.9E-06 52.5 3.3 22 339-360 8-29 (178)
384 1r8s_A ADP-ribosylation factor 92.8 0.052 1.8E-06 51.9 3.1 21 339-359 2-22 (164)
385 3t5d_A Septin-7; GTP-binding p 92.8 0.04 1.4E-06 58.6 2.5 22 339-360 10-31 (274)
386 1upt_A ARL1, ADP-ribosylation 92.8 0.053 1.8E-06 52.2 3.1 22 338-359 8-29 (171)
387 1uj2_A Uridine-cytidine kinase 92.7 0.053 1.8E-06 56.9 3.2 24 338-361 23-46 (252)
388 1m7b_A RND3/RHOE small GTP-bin 92.7 0.072 2.5E-06 52.4 4.0 22 339-360 9-30 (184)
389 2g6b_A RAS-related protein RAB 92.7 0.055 1.9E-06 52.6 3.1 22 339-360 12-33 (180)
390 2cxx_A Probable GTP-binding pr 92.7 0.046 1.6E-06 53.7 2.5 22 339-360 3-24 (190)
391 1ypw_A Transitional endoplasmi 92.6 0.0078 2.7E-07 74.2 -3.9 43 329-373 503-545 (806)
392 1z0f_A RAB14, member RAS oncog 92.6 0.058 2E-06 52.3 3.1 22 339-360 17-38 (179)
393 3con_A GTPase NRAS; structural 92.5 0.058 2E-06 53.2 3.1 22 339-360 23-44 (190)
394 2efe_B Small GTP-binding prote 92.5 0.06 2.1E-06 52.4 3.1 22 339-360 14-35 (181)
395 2y8e_A RAB-protein 6, GH09086P 92.5 0.051 1.7E-06 52.7 2.6 21 339-359 16-36 (179)
396 1wf3_A GTP-binding protein; GT 92.5 0.058 2E-06 58.4 3.2 22 339-360 9-30 (301)
397 2a9k_A RAS-related protein RAL 92.5 0.06 2.1E-06 52.6 3.1 21 339-359 20-40 (187)
398 3cmw_A Protein RECA, recombina 92.4 0.29 9.9E-06 64.2 10.1 34 325-359 369-405 (1706)
399 2qmh_A HPR kinase/phosphorylas 92.4 0.083 2.8E-06 53.5 4.0 35 325-360 23-57 (205)
400 3t5g_A GTP-binding protein RHE 92.4 0.093 3.2E-06 51.2 4.3 20 339-358 8-27 (181)
401 3be4_A Adenylate kinase; malar 92.3 0.059 2E-06 55.1 2.9 26 336-361 4-29 (217)
402 4bas_A ADP-ribosylation factor 92.3 0.083 2.8E-06 52.3 3.9 22 338-359 18-39 (199)
403 3kkq_A RAS-related protein M-R 92.2 0.067 2.3E-06 52.3 3.1 21 339-359 20-40 (183)
404 2gf9_A RAS-related protein RAB 92.2 0.067 2.3E-06 52.9 3.1 22 339-360 24-45 (189)
405 1sxj_B Activator 1 37 kDa subu 92.2 0.083 2.8E-06 56.8 4.1 22 340-361 45-66 (323)
406 1vg8_A RAS-related protein RAB 92.2 0.067 2.3E-06 53.5 3.1 22 339-360 10-31 (207)
407 2f6r_A COA synthase, bifunctio 92.2 0.061 2.1E-06 57.6 2.9 23 337-359 75-97 (281)
408 2bov_A RAla, RAS-related prote 92.2 0.068 2.3E-06 53.3 3.1 22 339-360 16-37 (206)
409 2xtp_A GTPase IMAP family memb 92.1 0.061 2.1E-06 56.5 2.8 22 339-360 24-45 (260)
410 3iev_A GTP-binding protein ERA 92.1 0.069 2.4E-06 57.9 3.2 22 339-360 12-33 (308)
411 1moz_A ARL1, ADP-ribosylation 92.1 0.043 1.5E-06 53.7 1.4 24 336-359 17-40 (183)
412 1nrj_B SR-beta, signal recogni 92.1 0.07 2.4E-06 54.0 3.1 23 339-361 14-36 (218)
413 2bme_A RAB4A, RAS-related prot 92.1 0.061 2.1E-06 52.7 2.6 22 339-360 12-33 (186)
414 3tkl_A RAS-related protein RAB 92.1 0.072 2.5E-06 52.7 3.1 22 339-360 18-39 (196)
415 3hu3_A Transitional endoplasmi 92.0 0.19 6.5E-06 58.2 7.0 28 334-361 235-262 (489)
416 1z06_A RAS-related protein RAB 92.0 0.074 2.5E-06 52.5 3.1 21 339-359 22-42 (189)
417 3cmu_A Protein RECA, recombina 92.0 0.36 1.2E-05 64.3 10.2 36 324-359 1066-1103(2050)
418 3exa_A TRNA delta(2)-isopenten 92.0 0.082 2.8E-06 57.3 3.6 25 337-361 3-27 (322)
419 2cjw_A GTP-binding protein GEM 92.0 0.073 2.5E-06 53.1 3.1 21 339-359 8-28 (192)
420 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.075 2.6E-06 51.9 3.1 21 339-359 7-27 (186)
421 3v9p_A DTMP kinase, thymidylat 92.0 0.073 2.5E-06 55.2 3.1 28 335-362 23-50 (227)
422 1zbd_A Rabphilin-3A; G protein 92.0 0.078 2.7E-06 53.0 3.2 22 339-360 10-31 (203)
423 2fg5_A RAB-22B, RAS-related pr 91.9 0.066 2.3E-06 53.1 2.6 22 339-360 25-46 (192)
424 2xb4_A Adenylate kinase; ATP-b 91.9 0.079 2.7E-06 54.5 3.2 23 339-361 2-24 (223)
425 1jbk_A CLPB protein; beta barr 91.9 0.089 3E-06 51.4 3.5 27 335-361 41-67 (195)
426 1ak2_A Adenylate kinase isoenz 91.8 0.093 3.2E-06 54.2 3.7 26 336-361 15-40 (233)
427 2gf0_A GTP-binding protein DI- 91.8 0.069 2.3E-06 53.0 2.6 21 339-359 10-30 (199)
428 2il1_A RAB12; G-protein, GDP, 91.8 0.075 2.6E-06 52.8 2.9 21 339-359 28-48 (192)
429 2qu8_A Putative nucleolar GTP- 91.8 0.078 2.7E-06 54.4 3.1 23 338-360 30-52 (228)
430 3a1s_A Iron(II) transport prot 91.8 0.082 2.8E-06 55.8 3.3 22 339-360 7-28 (258)
431 3d3q_A TRNA delta(2)-isopenten 91.7 0.07 2.4E-06 58.6 2.7 25 338-362 8-32 (340)
432 2a5j_A RAS-related protein RAB 91.7 0.081 2.8E-06 52.4 3.0 22 339-360 23-44 (191)
433 1gwn_A RHO-related GTP-binding 91.7 0.11 3.7E-06 52.5 4.0 22 339-360 30-51 (205)
434 3bwd_D RAC-like GTP-binding pr 91.7 0.096 3.3E-06 51.0 3.5 23 338-360 9-31 (182)
435 4dhe_A Probable GTP-binding pr 91.7 0.044 1.5E-06 55.7 1.0 24 338-361 30-53 (223)
436 3oes_A GTPase rhebl1; small GT 91.7 0.071 2.4E-06 53.3 2.6 23 338-360 25-47 (201)
437 3i8s_A Ferrous iron transport 91.7 0.073 2.5E-06 56.7 2.8 23 339-361 5-27 (274)
438 3tmk_A Thymidylate kinase; pho 91.7 0.081 2.8E-06 54.4 3.0 29 335-363 3-31 (216)
439 2h92_A Cytidylate kinase; ross 91.7 0.07 2.4E-06 54.3 2.5 25 337-361 3-27 (219)
440 1e4v_A Adenylate kinase; trans 91.6 0.074 2.5E-06 54.1 2.7 23 339-361 2-24 (214)
441 3umf_A Adenylate kinase; rossm 91.6 0.081 2.8E-06 54.4 2.9 29 333-361 25-53 (217)
442 4edh_A DTMP kinase, thymidylat 91.6 0.092 3.1E-06 53.8 3.3 29 335-363 4-32 (213)
443 1sky_E F1-ATPase, F1-ATP synth 91.6 0.039 1.3E-06 63.2 0.5 36 326-362 141-176 (473)
444 3dz8_A RAS-related protein RAB 91.6 0.075 2.6E-06 52.6 2.6 22 339-360 25-46 (191)
445 3reg_A RHO-like small GTPase; 91.6 0.088 3E-06 52.2 3.1 22 339-360 25-46 (194)
446 1x3s_A RAS-related protein RAB 91.6 0.088 3E-06 51.9 3.1 22 339-360 17-38 (195)
447 1zd9_A ADP-ribosylation factor 91.5 0.089 3E-06 52.0 3.1 21 339-359 24-44 (188)
448 2atv_A RERG, RAS-like estrogen 91.5 0.091 3.1E-06 52.2 3.1 23 338-360 29-51 (196)
449 3cph_A RAS-related protein SEC 91.5 0.089 3E-06 52.8 3.1 23 338-360 21-43 (213)
450 4b4t_I 26S protease regulatory 91.5 0.58 2E-05 52.8 9.9 30 333-362 212-241 (437)
451 1ojl_A Transcriptional regulat 91.5 0.35 1.2E-05 52.2 8.0 28 335-362 23-50 (304)
452 2p5s_A RAS and EF-hand domain 91.4 0.09 3.1E-06 52.5 3.0 23 338-360 29-51 (199)
453 3llu_A RAS-related GTP-binding 91.4 0.09 3.1E-06 52.4 2.9 25 339-363 22-46 (196)
454 1zj6_A ADP-ribosylation factor 91.4 0.084 2.9E-06 52.0 2.7 23 337-359 16-38 (187)
455 2o52_A RAS-related protein RAB 91.4 0.084 2.9E-06 52.9 2.7 21 339-359 27-47 (200)
456 1a5t_A Delta prime, HOLB; zinc 91.3 0.27 9.2E-06 53.8 7.0 24 339-362 26-49 (334)
457 3cnl_A YLQF, putative uncharac 91.3 0.094 3.2E-06 55.6 3.1 30 338-367 100-129 (262)
458 2iwr_A Centaurin gamma 1; ANK 91.3 0.077 2.6E-06 51.6 2.2 21 339-359 9-29 (178)
459 2h57_A ADP-ribosylation factor 91.2 0.07 2.4E-06 52.7 1.9 23 339-361 23-45 (190)
460 2h17_A ADP-ribosylation factor 91.2 0.078 2.7E-06 52.0 2.2 22 339-360 23-44 (181)
461 3c5c_A RAS-like protein 12; GD 91.2 0.1 3.5E-06 51.6 3.1 21 339-359 23-43 (187)
462 2fv8_A H6, RHO-related GTP-bin 91.2 0.086 2.9E-06 53.1 2.6 33 328-360 16-48 (207)
463 1qvr_A CLPB protein; coiled co 91.2 0.17 5.8E-06 62.8 5.8 35 338-372 589-624 (854)
464 2wsm_A Hydrogenase expression/ 91.2 0.086 2.9E-06 53.5 2.6 24 338-361 31-54 (221)
465 2f7s_A C25KG, RAS-related prot 91.2 0.1 3.5E-06 52.7 3.2 22 339-360 27-48 (217)
466 2q3h_A RAS homolog gene family 91.2 0.11 3.6E-06 51.9 3.2 22 338-359 21-42 (201)
467 1jwy_B Dynamin A GTPase domain 91.2 0.085 2.9E-06 57.0 2.7 23 339-361 26-48 (315)
468 3def_A T7I23.11 protein; chlor 91.1 0.09 3.1E-06 55.5 2.8 22 339-360 38-59 (262)
469 3lv8_A DTMP kinase, thymidylat 91.1 0.1 3.5E-06 54.4 3.1 27 336-362 26-52 (236)
470 4tmk_A Protein (thymidylate ki 91.0 0.11 3.7E-06 53.4 3.1 27 336-362 2-28 (213)
471 2fu5_C RAS-related protein RAB 91.0 0.073 2.5E-06 52.0 1.8 21 339-359 10-30 (183)
472 2j37_W Signal recognition part 91.0 1.2 4.1E-05 51.5 12.2 26 337-362 101-126 (504)
473 3ld9_A DTMP kinase, thymidylat 91.0 0.12 4E-06 53.5 3.4 28 335-362 19-46 (223)
474 2j1l_A RHO-related GTP-binding 90.9 0.099 3.4E-06 53.0 2.8 21 339-359 36-56 (214)
475 2fh5_B SR-beta, signal recogni 90.9 0.14 4.8E-06 51.6 3.9 23 338-360 8-30 (214)
476 1p5z_B DCK, deoxycytidine kina 90.9 0.075 2.6E-06 56.1 1.9 28 335-362 22-49 (263)
477 1h65_A Chloroplast outer envel 90.9 0.095 3.2E-06 55.5 2.7 23 339-361 41-63 (270)
478 3crm_A TRNA delta(2)-isopenten 90.9 0.1 3.4E-06 57.0 2.8 25 338-362 6-30 (323)
479 2xxa_A Signal recognition part 90.8 0.89 3E-05 51.6 10.8 28 336-363 99-126 (433)
480 2aka_B Dynamin-1; fusion prote 90.8 0.093 3.2E-06 56.1 2.5 23 339-361 28-50 (299)
481 1ltq_A Polynucleotide kinase; 90.7 0.12 4E-06 55.5 3.2 31 338-371 3-33 (301)
482 2gco_A H9, RHO-related GTP-bin 90.7 0.1 3.5E-06 52.2 2.6 22 339-360 27-48 (201)
483 2g3y_A GTP-binding protein GEM 90.6 0.13 4.4E-06 52.6 3.3 22 339-360 39-60 (211)
484 3euj_A Chromosome partition pr 90.6 0.36 1.2E-05 55.6 7.3 77 438-518 371-464 (483)
485 2ocp_A DGK, deoxyguanosine kin 90.5 0.12 3.9E-06 53.8 2.9 27 336-362 1-27 (241)
486 3foz_A TRNA delta(2)-isopenten 90.5 0.14 4.6E-06 55.5 3.4 25 337-361 10-34 (316)
487 2b6h_A ADP-ribosylation factor 90.5 0.1 3.5E-06 51.9 2.4 24 336-359 28-51 (192)
488 2p65_A Hypothetical protein PF 90.5 0.11 3.7E-06 50.6 2.5 28 335-362 41-68 (187)
489 3r7w_A Gtpase1, GTP-binding pr 90.4 0.13 4.5E-06 55.6 3.3 27 336-362 2-28 (307)
490 1q57_A DNA primase/helicase; d 90.4 1.5 5.2E-05 50.6 12.5 34 326-359 231-264 (503)
491 2atx_A Small GTP binding prote 90.3 0.12 4E-06 51.2 2.6 22 339-360 20-41 (194)
492 3tqf_A HPR(Ser) kinase; transf 90.3 0.16 5.4E-06 50.2 3.4 33 326-359 6-38 (181)
493 2r62_A Cell division protease 90.3 0.059 2E-06 56.8 0.4 32 328-361 37-68 (268)
494 2zts_A Putative uncharacterize 90.3 0.17 5.6E-06 52.2 3.8 24 334-357 27-50 (251)
495 4djt_A GTP-binding nuclear pro 90.1 0.071 2.4E-06 54.0 0.7 21 339-359 13-33 (218)
496 2hf9_A Probable hydrogenase ni 89.9 0.13 4.4E-06 52.4 2.6 22 339-360 40-61 (226)
497 2v3c_C SRP54, signal recogniti 89.9 0.049 1.7E-06 62.0 -0.7 33 338-370 100-132 (432)
498 2yc2_C IFT27, small RAB-relate 89.9 0.081 2.8E-06 52.8 1.0 22 339-360 22-43 (208)
499 3cpj_B GTP-binding protein YPT 89.7 0.16 5.5E-06 51.8 3.1 22 339-360 15-36 (223)
500 2hup_A RAS-related protein RAB 89.7 0.14 4.8E-06 51.3 2.6 22 339-360 31-52 (201)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-114 Score=1119.49 Aligned_cols=780 Identities=29% Similarity=0.502 Sum_probs=661.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 002434 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEK 108 (922)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~ 108 (922)
+..+++++++++++.+++.+++.++|.++++|+..++|.++|+|++++|++|||+ +++|++++|+++|++.+++.+...
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-TCCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CChHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999999999999999999999999999999999 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 002434 109 VGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTN 188 (922)
Q Consensus 109 ~~~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~ 188 (922)
+..++..+++++++++++|+++|++++++++++|+++++..++.+..++..++.++..++.++.+.|.++|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Q 002434 189 ETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268 (922)
Q Consensus 189 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~ 268 (922)
|+.+.++|.+..++..+...+.....++..++..++..+..++++|+|++++.+|.+++|.+++++.++.....|+..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCC
Q 002434 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN 346 (922)
Q Consensus 269 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~s 346 (922)
..+..+.++.++++|++++++.+++.+.. .+....+.+|+|+|+||+|+||++++.++|+|+||+|++||++||||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecC
Confidence 99999999999999999999887543322 2223334578899999999999877889999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHH
Q 002434 347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425 (922)
Q Consensus 347 GsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l 425 (922)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||||||+||+ +++++++++||+.|++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred HHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 426 ~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
++||+.||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.++||+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccc
Q 002434 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKM 585 (922)
Q Consensus 506 ~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (922)
+++++||+|+||++|+|+|+|+|+||++++|.|+++++.|.......... + ........ ......
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~-----~------~~~~~~~~-~~~~~~--- 678 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAA-----E------GKFSRENS-VARQTS--- 678 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHH-----C------C-----------------
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhccccccccc-----c------cccccccc-cccccc---
Confidence 99999999999999999999999999999999999999885432100000 0 00000000 000000
Q ss_pred cCCCccccccccCCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCC
Q 002434 586 LKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGS 665 (922)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (922)
+.+.......+ .+....+. +..... .
T Consensus 679 ----------------------~~~~~~~~~~~--------~~~~~~~~---~~~~~~---------------------~ 704 (1321)
T 4f4c_A 679 ----------------------EHEGLSRQASE--------MDDIMNRV---RSSTIG---------------------S 704 (1321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------ccccccccccc--------ccchhhhh---hccccc---------------------c
Confidence 00000000000 00000000 000000 0
Q ss_pred CCCCCCCCCCCCCCccccccCcccCCCCCCCCCCCc-ch-hhh-hhhcCCcchHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 002434 666 DPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPT-KV-REE-ESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGS 742 (922)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~ 742 (922)
....+.. ++. ........ .. .++ ++.......+++++...++.|+.++++++++++.++
T Consensus 705 ~~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 766 (1321)
T 4f4c_A 705 ITNGPVI--------DEK----------EERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGF 766 (1321)
T ss_dssp -----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGG
T ss_pred ccCCcch--------hHH----------HhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 00000000 00 111 112223446777888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 002434 743 FNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGW 822 (922)
Q Consensus 743 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sf 822 (922)
.+|.++++++.++..++.+. .+......+|+++|++++++..++.+++.+++.+++.++++++|.++|++++++|++|
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~f 844 (1321)
T 4f4c_A 767 IYPTYSVFFTSFMNVFAGNP--ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGF 844 (1321)
T ss_dssp HHHHHHHHHHHHHHHTSSCS--STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 99999999999998887543 2233455678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 823 FDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTV 898 (922)
Q Consensus 823 FD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~ 898 (922)
||.++||+|+|+|||++|++.++..++..+..++..+++++++++++++++|++++++++++|+++++.++..+..
T Consensus 845 fd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~ 920 (1321)
T 4f4c_A 845 FDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRF 920 (1321)
T ss_dssp TTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987899999999999999999999999999999999999999999999999999999999999999888776543
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9e-104 Score=1016.20 Aligned_cols=770 Identities=35% Similarity=0.615 Sum_probs=652.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (922)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~ 110 (922)
.+++++++++++.+++.+++.+++.+.++++..++|.++|++++++|++|||+ +++|++++|+++|++.+++.+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 111 ~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.++..++.++++++++++++|++++++++++|+++++..++.+..++..++.++..++.++.+.|+++|+++||+|++|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~ 270 (922)
.+.++|.+..++..+...+.....++..++..++..+..++++|+|++++..|.+++|.++++++++.....++.++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888888999999999999999999999988877777777889999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCC--CCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCC
Q 002434 271 FYSFDQGRIAAYRLYEMISRSSSTTN--YDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (922)
Q Consensus 271 ~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 348 (922)
+..+.++..+++|++++++.+++.+. ..+..+++..|.|+++||+|+|+++++.++|+|+||+|++||++||||||||
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCC
Confidence 99999999999999999987654322 1122223456889999999999865556899999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHH
Q 002434 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (922)
Q Consensus 349 GKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~ 427 (922)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.+|. +.++++++++++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 689999999999999999
Q ss_pred hHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcch
Q 002434 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 428 ~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 507 (922)
++..+|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHhhccCCCCCcccccccccchhccCccCCCCCCCCCCccccC
Q 002434 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLK 587 (922)
Q Consensus 508 ~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (922)
++.||+|+||++|+|+++|+|+||++.++.|++++..|......... .. ..... ....
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~----~~~~----- 645 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELG-----NE--------ACKSK----DEID----- 645 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-----------------------------------------
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhhccccccc-----cc--------ccccc----cccc-----
Confidence 99999999999999999999999999999999998765432110000 00 00000 0000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCccccccccccccCCCCCcccccccccCCCCCCCC
Q 002434 588 SPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDP 667 (922)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (922)
. .+.+ .... ......+... .
T Consensus 646 -------------~-----~~~~----~~~~-------------~~~~~~~~~~-------------------------~ 665 (1284)
T 3g5u_A 646 -------------N-----LDMS----SKDS-------------GSSLIRRRST-------------------------R 665 (1284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------c-----cccc----cccc-------------cccccccccc-------------------------c
Confidence 0 0000 0000 0000000000 0
Q ss_pred CCCCCCCCCCCCccccccCcccCCCCCCCCCCCcchhhhhhhcCCcchHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHH
Q 002434 668 ESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLL 747 (922)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~ 747 (922)
.... ..... +. ....+++.++......+++++++.++.|++++++++++++.+++.|.+
T Consensus 666 -~~~~-----~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1284)
T 3g5u_A 666 -KSIC-----GPHDQ--------------DR-KLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAF 724 (1284)
T ss_dssp ---------------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred -cccc-----ccccc--------------cc-ccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 000000001112234566777777888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 002434 748 AYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEE 827 (922)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~ 827 (922)
.++++.++..+...............|.++|++++++.+++.+++.+++.+++++++.++|.++|++++++|++|||+++
T Consensus 725 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~ 804 (1284)
T 3g5u_A 725 SVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPK 804 (1284)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCS
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCC
Confidence 99999998877654322334455667888999999999999999999999999999999999999999999999999989
Q ss_pred CCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 828 NSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 828 n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
||+|+|++|+++|++.++..++..+..+++.+++++++++++++++|++++++++++|+++++.+++.+........
T Consensus 805 ~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~ 881 (1284)
T 3g5u_A 805 NTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALK 881 (1284)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777654433
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-89 Score=883.50 Aligned_cols=516 Identities=32% Similarity=0.515 Sum_probs=450.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcc-CChhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY-GNNGDIVSQVLSDVLLIQSALSEKVG 110 (922)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~-~~~G~l~srl~~Di~~i~~~~~~~~~ 110 (922)
+++++++++++..++.+++.+++...+.++..++|.++|++++++|++|||.. +++|++++|+++|++.+++.+...+.
T Consensus 796 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~ 875 (1321)
T 4f4c_A 796 WALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFS 875 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHH
Confidence 45566677777888889999999999999999999999999999999999852 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 111 ~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.++..++.++++++++++++|++++++++++|+++++.++..+..++...+.++..++....+.|+++|+++||+|++|+
T Consensus 876 ~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~ 955 (1321)
T 4f4c_A 876 TVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARED 955 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHH
T ss_pred HHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchH
Confidence 99999999999999999999999999999999888776666555555555566677888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHH--HHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI--VTALFAVILSGLGLNQAA 268 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l--~~~~~~~~~~~~~l~~l~ 268 (922)
.+.++|.+..+...+...+.....++..++...+..+..++++++|++++..+..+.+.. +.++.++.....++..+.
T Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1035 (1321)
T 4f4c_A 956 TFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFAT 1035 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888887777777777888888999999998887765543 333333333334566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCC
Q 002434 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYD-GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347 (922)
Q Consensus 269 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sG 347 (922)
..+..+.++..+++|++++++.+++.+... ....++..|+|+|+||+|+||++++.+||+|+||+|+|||++|||||||
T Consensus 1036 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SG 1115 (1321)
T 4f4c_A 1036 SYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115 (1321)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCC
Confidence 778889999999999999998776543222 1223345788999999999998777789999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc---CCCHHHHHHHHHHHH
Q 002434 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIAH 424 (922)
Q Consensus 348 sGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~ 424 (922)
||||||+++|+|+|+|++|+|++||+|++++++++||++|+||||||+||+|||||||+||. +++++++++|++.++
T Consensus 1116 sGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~ 1195 (1321)
T 4f4c_A 1116 CGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLAN 1195 (1321)
T ss_dssp SSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTT
T ss_pred ChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999994 589999999999999
Q ss_pred HHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 002434 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (922)
Q Consensus 425 l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 504 (922)
++++|.+||+||||.|||+|.+|||||||||||||||++||+|||||||||+||++||+.|+++|++..++||+|+||||
T Consensus 1196 l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1196 IHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp CHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred ChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 505 l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
++++++||+|+||++|+|+|+|+|+||++++|.|++|++.|..
T Consensus 1276 LsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1276 LNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp SSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988753
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.9e-85 Score=779.96 Aligned_cols=511 Identities=27% Similarity=0.365 Sum_probs=469.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (922)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i 113 (922)
+++++++++..++.++..++..+.+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++.+...+..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 145 (587)
T 3qf4_A 67 ILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLRIVV 145 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566777788888899999999999999999999999999999 69999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 002434 114 HNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193 (922)
Q Consensus 114 ~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~ 193 (922)
..++.+++++++++.++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.
T Consensus 146 ~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~ 225 (587)
T 3qf4_A 146 RAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYEN 225 (587)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Confidence 88888899999999999999999999999999888888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYS 273 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~ 273 (922)
++|.+..++..+...+.....+...++..++..+..++++|+|++++.+|.+++|.+++++.+......|+..+...+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~ 305 (587)
T 3qf4_A 226 ENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF 305 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887777777777777777778888999999999999999999999988888888899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 274 FDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 274 ~~~a~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
+.++..+++|+.++++.+++..+... ...++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||||||||||
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKST 384 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKST 384 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999987654322211 1223346789999999999743 468999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
|+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++. +.++++++++++.+++++++..
T Consensus 385 ll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 464 (587)
T 3qf4_A 385 LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS 464 (587)
T ss_dssp HHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997 6889999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhcc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 511 (922)
+|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.|
T Consensus 465 l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 544 (587)
T 3qf4_A 465 LPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLA 544 (587)
T ss_dssp SSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTS
T ss_pred cccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 512 D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
|+|++|++|+|+++|+|+||+++++.|+++++.|.
T Consensus 545 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 545 DKILVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579 (587)
T ss_dssp SEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC
T ss_pred CEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHh
Confidence 99999999999999999999999999999998763
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-84 Score=778.28 Aligned_cols=507 Identities=31% Similarity=0.418 Sum_probs=467.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
++++++..++.+++.++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 146 (578)
T 4a82_A 68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDC 146 (578)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555677888888899999999999999999999999999999 69999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++++++++.++|++++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|
T Consensus 147 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 226 (578)
T 4a82_A 147 ITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF 226 (578)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHH
Confidence 88999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+.....+...++...+..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 306 (578)
T 4a82_A 227 DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888888999999999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCC-CCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ 355 (922)
+..+++|++++++.+++..+..+ .+.++..+.|+++||+|+|++ ++.++|+|+||+|++||++|||||||||||||++
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHH
Confidence 99999999999987755332211 222334578999999999974 3467999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 356 ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
+|+|+++|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|. ..+++++.++++.+++++++..+|+
T Consensus 386 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 465 (578)
T 4a82_A 386 LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465 (578)
T ss_dssp TTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred HHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999987 6788999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i 514 (922)
|+||.+||+|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|
T Consensus 466 g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 545 (578)
T 4a82_A 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI 545 (578)
T ss_dssp GGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEE
T ss_pred hhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 515 AVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 515 ~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
++|++|+|+++|+|+|+++.++.|+++++.|
T Consensus 546 ~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp EEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred EEEECCEEEEECCHHHHHhCCcHHHHHHHhh
Confidence 9999999999999999999999999998765
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-85 Score=783.31 Aligned_cols=512 Identities=30% Similarity=0.452 Sum_probs=471.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112 (922)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~ 112 (922)
++.++++.++..++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~ 158 (598)
T 3qf4_B 80 MLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSIIQF 158 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666778888888999999999999999999999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 002434 113 IHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (922)
Q Consensus 113 i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~ 192 (922)
+..++.+++++++++.++|++++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+
T Consensus 159 ~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 238 (598)
T 3qf4_B 159 FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE 238 (598)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHH
Confidence 99999999999999999999999999999999988888888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 272 (922)
.++|.+..++..+...+.....++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~ 318 (598)
T 3qf4_B 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFN 318 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888877777777777778888889999999999999999999888877777889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHH
Q 002434 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (922)
Q Consensus 273 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 352 (922)
.+.++..+++|+.++++.+++.+.......++..+.|+++||+|+|++ +.++|+|+||+|++||++||||||||||||
T Consensus 319 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKST 396 (598)
T 3qf4_B 319 MIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTT 396 (598)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHH
Confidence 999999999999999987765332222223344678999999999963 457999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHH
Q 002434 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (922)
Q Consensus 353 l~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~ 431 (922)
|+++|+|+|+|++|+|.+||+|+.+++.+++|++|+||||+|++|++||+|||.+|+ ..++++++++++.+++++++..
T Consensus 397 ll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (598)
T 3qf4_B 397 IVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH 476 (598)
T ss_dssp HHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHT
T ss_pred HHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997 5788999999999999999999
Q ss_pred hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhcc
Q 002434 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (922)
Q Consensus 432 l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 511 (922)
+|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.|
T Consensus 477 ~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 556 (598)
T 3qf4_B 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA 556 (598)
T ss_dssp STTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHC
T ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 512 D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
|+|++|++|+|+++|+|+||+++++.|++++..|..
T Consensus 557 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 557 DLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp SEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHG
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999987753
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.7e-83 Score=763.34 Aligned_cols=507 Identities=28% Similarity=0.438 Sum_probs=466.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
++++++..++.++..++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677788888889999999999999999999999999998 69999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++.++++++++|++++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|
T Consensus 151 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 230 (582)
T 3b5x_A 151 ASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRF 230 (582)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHH
Confidence 99999999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+......+...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T 3b5x_A 231 DKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
+..+++|+.++++.+++.++ ...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 311 GMAACQTLFGLMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHHHHHcCCCcCCC-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999987654321 111222235679999999999642 2579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
|+|+++|++|+|.+||+|+.+++.+++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++.+|+
T Consensus 389 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 468 (582)
T 3b5x_A 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468 (582)
T ss_pred HhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999986 5788999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i 514 (922)
||||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|
T Consensus 469 g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i 548 (582)
T 3b5x_A 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI 548 (582)
T ss_pred cccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCCeEEEecCHHHHhhcCcHHHHHHHhHH
Q 002434 515 AVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (922)
Q Consensus 515 ~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~ 546 (922)
++|++|+|+++|+|+|+++.++.|+++++.|.
T Consensus 549 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 549 LVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred EEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 99999999999999999999999999998763
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-82 Score=764.73 Aligned_cols=510 Identities=34% Similarity=0.536 Sum_probs=452.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (922)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~ 115 (922)
++++.++..++.+++.++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~ 146 (595)
T 2yl4_A 68 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRA 146 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555667778888889999999999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 002434 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (922)
Q Consensus 116 ~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~ 195 (922)
++.+++.++++++++|++++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 147 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 226 (595)
T 2yl4_A 147 GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEK 226 (595)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHH
Confidence 99999999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (922)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~ 275 (922)
|.+..++..+...+......+..++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 306 (595)
T 2yl4_A 227 YASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELM 306 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888777777777777788889999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC-CCCccc-EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHH
Q 002434 276 QGRIAAYRLYEMISRSSSTTNYDGNTL-PSVHGN-IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (922)
Q Consensus 276 ~a~~a~~ri~~~l~~~~~~~~~~~~~~-~~~~g~-i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 353 (922)
++..+++|+.++++.+++..+..+... ++..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||
T Consensus 307 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 307 KGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp HHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHH
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999987654322111111 223567 999999999975434579999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-C---CCHHHHHHHHHHHHHHHhH
Q 002434 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-D---ATLDQIEEAAKIAHAHTFI 429 (922)
Q Consensus 354 ~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~---~~~~~~~~~~~~~~l~~~i 429 (922)
+++|+|+++|++|+|.+||+|+.+++.+++|++|+||+|+|.+|++||+|||.++. . .++++++++++.+++++++
T Consensus 387 l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (595)
T 2yl4_A 387 LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFI 466 (595)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999986 3 6889999999999999999
Q ss_pred HHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh
Q 002434 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509 (922)
Q Consensus 430 ~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 509 (922)
..+|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++
T Consensus 467 ~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~ 546 (595)
T 2yl4_A 467 RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK 546 (595)
T ss_dssp HTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHHHhHH
Q 002434 510 NADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (922)
Q Consensus 510 ~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~~~~~ 546 (922)
.||+|++|++|+|++.|+|+|++++ ++.|+++++.|.
T Consensus 547 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 547 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp HSSEEEEEETTEEEEEECSCC------C----------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhh
Confidence 9999999999999999999999984 889999887664
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-82 Score=762.30 Aligned_cols=506 Identities=30% Similarity=0.473 Sum_probs=466.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (922)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~l~srl~~Di~~i~~~~~~~~~~~i~~~ 116 (922)
++++++..++.++..++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888889999999999999999999999999999 69999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 002434 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSY 196 (922)
Q Consensus 117 ~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~~~~~~~ 196 (922)
+.+++.++++++++|++++++++++|+++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|
T Consensus 151 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 230 (582)
T 3b60_A 151 ASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHH
Confidence 99999999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (922)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 276 (922)
.+..++..+...+......+..++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T 3b60_A 231 DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888899999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH
Q 002434 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (922)
Q Consensus 277 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 356 (922)
+..+++|+.++++.+++..+ ...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 311 GMAACQTLFAILDSEQEKDE-GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp HHHHHHHHHHHHHSCCSCCC-CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccC-CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999987654321 111222335679999999999632 2579999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhc
Q 002434 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEK 434 (922)
Q Consensus 357 l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~ 434 (922)
|+|+++|++|+|.+||+|+.+++.+++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++.+|+
T Consensus 389 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~ 468 (582)
T 3b60_A 389 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468 (582)
T ss_dssp HTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTT
T ss_pred HhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999986 5788999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE
Q 002434 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 435 g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i 514 (922)
|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|
T Consensus 469 g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i 548 (582)
T 3b60_A 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEI 548 (582)
T ss_dssp GGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEE
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 515 AVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 515 ~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
++|++|+|++.|+|+|+++.++.|+++++.|
T Consensus 549 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 549 VVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp EEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred EEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999999999999998865
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-78 Score=777.87 Aligned_cols=516 Identities=34% Similarity=0.558 Sum_probs=470.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDT-YGNNGDIVSQVLSDVLLIQSALSEKVG 110 (922)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~l~srl~~Di~~i~~~~~~~~~ 110 (922)
+++++++++++.+++.+++.+++.+.++++..++|.++|++++++|++||++ .+++|++++|+++|++.+++.+...+.
T Consensus 751 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~ 830 (1284)
T 3g5u_A 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888889999999999999999999999999999999994 147999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 002434 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (922)
Q Consensus 111 ~~i~~~~~~i~~li~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ika~~~e~ 190 (922)
.++..+..+++++++++.++|++++++++++|+++++.++..+..++...+.++..++....+.|+++|+++||+|+.|+
T Consensus 831 ~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~ 910 (1284)
T 3g5u_A 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999988888888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~ 270 (922)
.+.++|.+..+...+...+.....++..++...+..+..++++|+|++++..|.++.+.++.++.+......++..+...
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1284)
T 3g5u_A 911 KFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSF 990 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888888999999999999999999999988877777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCC
Q 002434 271 FYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (922)
Q Consensus 271 ~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 348 (922)
+..+.++..+++|++++++.+++.... .+..+++..+.|+++||+|+|+++++.++|+|+||+|++||++||||||||
T Consensus 991 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGs 1070 (1284)
T 3g5u_A 991 APDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGC 1070 (1284)
T ss_dssp SCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSST
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCC
Confidence 777888999999999999876543221 112222346789999999999865456799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc---CCCHHHHHHHHHHHHH
Q 002434 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIAHA 425 (922)
Q Consensus 349 GKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l 425 (922)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. ..++++++++++.+++
T Consensus 1071 GKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~ 1150 (1284)
T 3g5u_A 1071 GKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150 (1284)
T ss_dssp THHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999986 3689999999999999
Q ss_pred HHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 426 ~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
++++..+|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+
T Consensus 1151 ~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230 (1284)
T ss_dssp HHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCT
T ss_pred HHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred chhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 506 ~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
++++.||||+||++|+|+|+|+|+||++++|.|+++++.|..
T Consensus 1231 ~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1231 STIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp TGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC-
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998753
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-63 Score=547.80 Aligned_cols=275 Identities=38% Similarity=0.598 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCCCCCcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCc
Q 002434 271 FYSFDQGRIAAYRLYEMISRSSSTTNYD-GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349 (922)
Q Consensus 271 ~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 349 (922)
+..++++.++++|++++++.+++..... ..+.+...+.|+++||+|+|++ +.++|+||||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 3456677889999999998654322111 1122234568999999999963 357999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHh
Q 002434 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTF 428 (922)
Q Consensus 350 KSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~ 428 (922)
||||+++|+|+|+|++|+|.+||+|+.+++..++|++|+||+|+|.+|++||+|||.++. ..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 6788999999999999999
Q ss_pred HHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchh
Q 002434 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (922)
Q Consensus 429 i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 508 (922)
+..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhHHh
Q 002434 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (922)
Q Consensus 509 ~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~~~ 547 (922)
..||+|++|++|+|++.|+|+||++.++.|+++++.|..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 999999999999999999999999999999999988753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.9e-54 Score=458.58 Aligned_cols=238 Identities=42% Similarity=0.711 Sum_probs=223.1
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
.+|+++||+|+|++ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46999999999942 13579999999999999999999999999999999999999999999999999999888889999
Q ss_pred ceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
|+||+|+|.+|+.|++|||.++. ..+++++.++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976 45678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhc-CcHHHHHHHh
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKC 544 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~-~~~~~~l~~~ 544 (922)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++... .+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 999999999999999999999999988778999999999999888999999999999999999999887 7888888764
Q ss_pred H
Q 002434 545 E 545 (922)
Q Consensus 545 ~ 545 (922)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.2e-53 Score=455.96 Aligned_cols=239 Identities=38% Similarity=0.620 Sum_probs=222.6
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|+++||+|+|++....++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999643225799999999999999999999999999999999999997 8999999999998888889999
Q ss_pred ceEEecCCCCccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
|+||+|+|.+|+.|++|||.++. ..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999976 45677888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++++..+.|.+++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999877899999999999988899999999999999999999998888898888765
Q ss_pred H
Q 002434 546 E 546 (922)
Q Consensus 546 ~ 546 (922)
.
T Consensus 255 ~ 255 (260)
T 2ghi_A 255 S 255 (260)
T ss_dssp H
T ss_pred h
Confidence 3
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-52 Score=454.07 Aligned_cols=240 Identities=37% Similarity=0.620 Sum_probs=220.2
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
.+.|+++||+|+|++.++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 34699999999996422357999999999999999999999999999999999999999999999999999888888899
Q ss_pred cceEEecCCCCccccHHHHHhcCc-CCCH-HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 386 QIGLVTQEPALLSLSIRDNIAYGR-DATL-DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~eNi~~~~-~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+|+||+|+|.+|+.||+|||.++. .... +++.++++..++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999975 3333 56777888888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHH
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l 541 (922)
+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++....+.|.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 9999999999999999999999999998754 89999999999998889999999999999999999999888899888
Q ss_pred HHhH
Q 002434 542 LKCE 545 (922)
Q Consensus 542 ~~~~ 545 (922)
+..+
T Consensus 254 ~~~~ 257 (271)
T 2ixe_A 254 VEAL 257 (271)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 7665
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-53 Score=453.96 Aligned_cols=235 Identities=42% Similarity=0.676 Sum_probs=219.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+|+|+ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+
T Consensus 2 l~~~~l~~~y~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSS--SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeC--CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 78999999995 2357999999999999999999999999999999999999999999999999998887777889999
Q ss_pred EEecCCCCccccHHHHHhcC-c-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 389 LVTQEPALLSLSIRDNIAYG-R-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
||+|+|.+|+.|++|||.++ . ..+++++.++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 3 466788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+++++.+..+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 9999999999999999999999988877899999999999988899999999999999999999988777788777643
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-51 Score=460.20 Aligned_cols=229 Identities=23% Similarity=0.349 Sum_probs=216.7
Q ss_pred CcccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHh
Q 002434 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 305 ~~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr 384 (922)
..+.|+++||+|+|+. ++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 3467999999999963 24579999999999999999999999999999999999998 899999999999999999999
Q ss_pred hcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 002434 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~ 464 (922)
++|+||+|++.+|+.|++||+.+.....++++.++++.+++.+++..+|.+++|.++++|.+||||||||++|||||+++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999997666778899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 465 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|++||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..||||++|++|+|++.|+++|+....
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999998877789999999999988889999999999999999999998763
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4e-50 Score=426.99 Aligned_cols=224 Identities=29% Similarity=0.460 Sum_probs=204.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+|+|+. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 3899999999953 235799999999999999999999999999999999999999999999999 59
Q ss_pred eEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCE
Q 002434 388 GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (922)
Q Consensus 388 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~i 467 (922)
+||+|+|.+++.|++|||.++....+++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|++
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999865445566677777777778888899999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHh
Q 002434 468 LLLDEVTGGLDFEAERAVQEALD---LLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKC 544 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~---~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~ 544 (922)
|||||||++||+.++..+.+.|. ++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|.+++..
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 228 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHH
Confidence 99999999999999999999884 444689999999999998889999999999999999999999888889888765
Q ss_pred H
Q 002434 545 E 545 (922)
Q Consensus 545 ~ 545 (922)
|
T Consensus 229 ~ 229 (237)
T 2cbz_A 229 Y 229 (237)
T ss_dssp T
T ss_pred H
Confidence 4
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6.6e-50 Score=423.25 Aligned_cols=221 Identities=23% Similarity=0.389 Sum_probs=199.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|+++||+|+|+. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 45999999999963 245799999999999999999999999999999999999999999999998 5
Q ss_pred ceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC
Q 002434 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (922)
Q Consensus 387 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~ 466 (922)
|+||+|+|.+|+.|++|||.++....+.+..++++.+++.+++..+|.+++|.+++++.+||||||||++|||||+++|+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986555556677777788888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHH
Q 002434 467 ILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (922)
Q Consensus 467 iliLDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l 541 (922)
+|||||||++||+.+++.+.+. +++..+++|+|++||+++.++.||+|++|++|++++.|+++++.+..+.|.++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 226 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 9999999999999999999986 45555689999999999998889999999999999999999998765556544
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-47 Score=416.07 Aligned_cols=218 Identities=28% Similarity=0.477 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC--CCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~ 385 (922)
-|+++||+|+|++ ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999963 346999999999999999999999999999999999999999999999999994 334556889
Q ss_pred cceEEecCC--CCccccHHHHHhcCc---CCCHHHH----HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~--~lf~~ti~eNi~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
+||||+|+| .+|..|++|||.++. ..+.++. .++++.. |++........+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCCcccCCHHHHHHHH
Confidence 999999998 477899999999874 2344433 3333333 3334445566789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999865 99999999999999999999987
Q ss_pred cCcHH
Q 002434 534 TGDLY 538 (922)
Q Consensus 534 ~~~~~ 538 (922)
....+
T Consensus 234 ~~~~~ 238 (275)
T 3gfo_A 234 EKEVI 238 (275)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 64433
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.5e-47 Score=406.60 Aligned_cols=213 Identities=25% Similarity=0.368 Sum_probs=179.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH----
Q 002434 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL---- 383 (922)
Q Consensus 309 i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l---- 383 (922)
|+++||+|+|+.+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcCc------CCCHHH----HHHHHHHHHHHHhHHHhhccchhh-hcCCCCCCCHHH
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQ-VGRAGLALTEEQ 451 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~-vge~G~~LSGGq 451 (922)
|++||||+|+|.+|+ .|++||+.++. ..+.++ +.++++.. |+... ......+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 457999999999997 59999998752 223322 22222222 22222 245678899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEeCCeEEEecCHH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~ 529 (922)
|||++|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.++.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999988743 89999999999987779999999999999999877
Q ss_pred HHh
Q 002434 530 ELL 532 (922)
Q Consensus 530 eL~ 532 (922)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 653
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-47 Score=404.70 Aligned_cols=218 Identities=22% Similarity=0.374 Sum_probs=188.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH-hhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~ 386 (922)
-|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 389999999995 3579999999999999999999999999999999999999999999999999988877655 456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 387 IGLVTQEPALLSL-SIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 387 i~~v~Q~~~lf~~-ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
|+||+|++.+|.. |++||+.++. ..+.++..+.+ .+.++.++ |++...+....+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999975 9999999874 12222322222 23344444 46666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5899999999998765 5999999999999999999998753
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-47 Score=426.92 Aligned_cols=218 Identities=29% Similarity=0.439 Sum_probs=188.8
Q ss_pred ccEEEEeEEEEeCCCC-CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---
Q 002434 307 GNIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW--- 382 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~--- 382 (922)
.-|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996422 246999999999999999999999999999999999999999999999999999998765
Q ss_pred HhhcceEEecCCCCcc-ccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 383 LRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
+|++||||+|++.+|+ .||+||+.++. ..+.++ +.++++.+++ .........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----------GGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHH
Confidence 4788999999999986 69999999863 233333 3444444443 333455567899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL 531 (922)
++|||||+.+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999876 999999999999999999999
Q ss_pred hhcC
Q 002434 532 LATG 535 (922)
Q Consensus 532 ~~~~ 535 (922)
+...
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 8753
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.7e-47 Score=407.64 Aligned_cols=213 Identities=23% Similarity=0.372 Sum_probs=187.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 489999999995 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-ccccHHHHHhcCcC-C----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 388 GLVTQEPAL-LSLSIRDNIAYGRD-A----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 388 ~~v~Q~~~l-f~~ti~eNi~~~~~-~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+|++|++.+ |+.|++||+.++.. . ..+++.++++..++.+ .......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999999987 56899999998752 1 2344555555544432 23344568999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 462 LL------NPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 462 ~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
++ +|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 4699999999999875 9999999999999999999987
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 24
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7e-47 Score=412.68 Aligned_cols=216 Identities=24% Similarity=0.407 Sum_probs=180.7
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhh
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~ 385 (922)
.+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3699999999999999999999999999999999999999999999998
Q ss_pred cceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+|+||+|++.+|++|++|||. +......++.++++.+++.+++..+|.+++|.+++++.+||||||||++|||||+++|
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 599999999999999999999 6544455566777778888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHH
Q 002434 466 SILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~ 540 (922)
++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++......|.+
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 254 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHH
Confidence 999999999999999999999864 445568999999999999888999999999999999999999765444443
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-46 Score=404.00 Aligned_cols=213 Identities=25% Similarity=0.434 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC--CCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~ 385 (922)
-|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999994 357999999999999999999999999999999999999999999999999985 344566788
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc----CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
+|+||+|++.+|+ .|++||+.++. ..+.+ ++.++++.. |++........+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-----------GLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCChhhCCHHHHHHHH
Confidence 9999999999987 59999999852 22322 233333333 3333445566789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999998764
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.5e-46 Score=417.18 Aligned_cols=214 Identities=26% Similarity=0.447 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC--CCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~--~~~~~lr~ 385 (922)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999994 4579999999999999999999999999999999999999999999999999832 22234567
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCcC---CC----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
+||||+|++.+|+ .||+|||.|+.. .. .+++.++++..++.+ .......+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------LAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------GTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHH
Confidence 8999999999996 799999999742 22 234455555554433 3445556899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 458 ARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
||||+.+|++||||||||+||+.++..+.+.|.++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 48999999999998865 999999999999999999999876
Q ss_pred C
Q 002434 535 G 535 (922)
Q Consensus 535 ~ 535 (922)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-46 Score=398.25 Aligned_cols=212 Identities=24% Similarity=0.374 Sum_probs=184.4
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4699999999994 3579999999999999999999999999999999999999999999999999976 45677889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
|+||+|++.+|. .|++||+.++. ..+.+ ++.++++..++ +........+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-----------GEKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----------GGGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-----------chHhcCChhhCCHHHHHHHHHH
Confidence 999999999987 49999998853 22322 33444444433 3334455678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhh
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
|||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999877 99999999999999999999864
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.4e-46 Score=401.64 Aligned_cols=214 Identities=23% Similarity=0.347 Sum_probs=184.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH-HHhhc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE-WLRSQ 386 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~ 386 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 389999999995 35799999999999999999999999999999999999999999999999999877653 45778
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCcCC----------------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGRDA----------------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~~~----------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSG 449 (922)
|+||+|++.+|. .|++||+.++... ..++. ...+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 7999999986421 11111 11223344444 566666777889999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecC
Q 002434 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 450 GqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~ 527 (922)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998874 4899999999999886 499999999999999999
Q ss_pred HHHH
Q 002434 528 HDEL 531 (922)
Q Consensus 528 ~~eL 531 (922)
++++
T Consensus 237 ~~~~ 240 (257)
T 1g6h_A 237 GEEE 240 (257)
T ss_dssp SHHH
T ss_pred HHHh
Confidence 9983
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-46 Score=400.67 Aligned_cols=213 Identities=22% Similarity=0.402 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC----------
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN---------- 377 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~---------- 377 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 399999999994 3579999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhhcceEEecCCCCcc-ccHHHHHhcCc----CCCHH----HHHHHHHHHHHHHhHHHhhccchhh-hcCCC
Q 002434 378 LKL---EWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQ-VGRAG 444 (922)
Q Consensus 378 ~~~---~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~-vge~G 444 (922)
.+. ..+|++|+||+|++.+|+ .|++||+.++. ..+.+ ++.++++..++ +.. .....
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI-----------DERAQGKYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-----------CHHHHTSCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC-----------CchhhcCCc
Confidence 443 346788999999999987 59999999852 22222 23334444333 333 44556
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeE
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i 522 (922)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999998874 48999999999999865 999999999999
Q ss_pred EEecCHHHHhhc
Q 002434 523 FEMGTHDELLAT 534 (922)
Q Consensus 523 ~~~G~~~eL~~~ 534 (922)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.4e-46 Score=417.13 Aligned_cols=212 Identities=25% Similarity=0.405 Sum_probs=185.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 45799999999999999999999999999999999999999999999999999988765 4679
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHHH----HHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|||+|++.+|+ .||+|||.|+. ..+.++ +.++++..++ +........+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-----------GGGTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhHCCHHHHHHHHHHH
Confidence 99999999996 69999999974 234433 3344444433 33444556789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+.+|++||||||||+||+..+..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+....
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999988743 8999999999998765 9999999999999999999998753
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.5e-46 Score=393.39 Aligned_cols=206 Identities=24% Similarity=0.334 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH---Hh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~---lr 384 (922)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 389999999995 357999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -hcceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 385 -SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 385 -~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
++|+||+|++.+|. .|++||+.++. ....+ ++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 78999999999886 79999998853 12222 223333332 333444556678999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEEeCCeEEEecC
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~ 527 (922)
+|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.++.||+|++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999998874 5899999999999887799999999999999986
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-45 Score=398.37 Aligned_cols=212 Identities=27% Similarity=0.456 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPE--IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
|+++||+++|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999952111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred ceEEecCC--CCccccHHHHHhcCcC------CCHHHHHHHHHHHHHH--HhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 387 IGLVTQEP--ALLSLSIRDNIAYGRD------ATLDQIEEAAKIAHAH--TFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 387 i~~v~Q~~--~lf~~ti~eNi~~~~~------~~~~~~~~~~~~~~l~--~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
|+||+|+| .+++.|++||+.++.. ...+++.++++..++. ++. .....+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-----------DRVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-----------TCCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-----------cCChhhCCHHHHHHHH
Confidence 99999997 4667999999998642 1234566666666654 333 3334679999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 457 iARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
|||||+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999876 999999999999999999998654
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-45 Score=411.58 Aligned_cols=212 Identities=25% Similarity=0.414 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999994 35799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|||+|++.+|+ .|++|||.|+.. .+. +++.++++..++.++ ......+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-----------LDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999999742 222 344555555554433 33445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++|+....
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988743 899999999999875 49999999999999999999998753
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.7e-46 Score=402.75 Aligned_cols=213 Identities=23% Similarity=0.313 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC--CCCHHHHhh
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~--~~~~~~lr~ 385 (922)
-|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 499999999995 357999999999999999999999999999999999999999999999999997 777788899
Q ss_pred cceEEecCCCC-ccc--cHHHHHhcCcC--------CCHH---HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH
Q 002434 386 QIGLVTQEPAL-LSL--SIRDNIAYGRD--------ATLD---QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (922)
Q Consensus 386 ~i~~v~Q~~~l-f~~--ti~eNi~~~~~--------~~~~---~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq 451 (922)
+|+||+|++.+ |.. |++|||.++.. ..++ ++.++++.. |++........+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHH
Confidence 99999999875 444 99999998641 1221 222233322 44444556677899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEecCcchhh-ccCEEEEEeCCeEEEecC
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRST--IIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~--i~itH~l~~~~-~~D~i~vl~~G~i~~~G~ 527 (922)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988743 8899 99999999885 499999999999999999
Q ss_pred HHHHhhc
Q 002434 528 HDELLAT 534 (922)
Q Consensus 528 ~~eL~~~ 534 (922)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.2e-45 Score=409.81 Aligned_cols=214 Identities=25% Similarity=0.417 Sum_probs=184.4
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
..|+++|++++|+ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~--g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCT--TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEc--CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 3599999999994 13469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCc---CCCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 387 IGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 387 i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
|+||+|++.+|+ .|++|||.|+. ..+. +++.++++..++.+ .......+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------YANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHH
Confidence 999999999996 79999999863 2232 23444444444433 33445568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
|||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+....
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988743 8999999999998765 9999999999999999999998653
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-45 Score=412.06 Aligned_cols=212 Identities=30% Similarity=0.461 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999994 35799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|||+|++.+|+ .|++|||.|+. ..+.+ ++.++++..++. ........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 69999999873 22332 344444444433 3334455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++...
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988743 899999999999875 49999999999999999999998753
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-45 Score=408.58 Aligned_cols=210 Identities=26% Similarity=0.462 Sum_probs=183.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999994 34 9999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCc---C-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 389 LVTQEPALLS-LSIRDNIAYGR---D-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~---~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
||+|++.+|+ .|++|||.|+. . ..++++.++++..++.++ ......+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999997 69999999863 1 122555666665554433 334456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
+|++||||||||+||+.++..+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+....
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998874 3899999999998875 49999999999999999999998653
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-45 Score=390.36 Aligned_cols=207 Identities=28% Similarity=0.393 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++|++++|+ + +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999987643 3467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCcCC-C----HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRDA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
||+|++.+|+ .|++||+.++... . ++++.++++.. |++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999987 5999999997522 1 12233333333 3333344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999988743 8999999999998755 999999999999999999998754
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.2e-45 Score=411.05 Aligned_cols=213 Identities=24% Similarity=0.375 Sum_probs=182.7
Q ss_pred EEEEeEEEEeCCCCCCC--cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC---HHHH
Q 002434 309 IEFRNVYFSYLSRPEIP--ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWL 383 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~--vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~---~~~l 383 (922)
|+++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 346 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcCcC---CCH----HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+++||||+|++.+|+ .|++|||.|+.. .+. +++.++++..++.+ .......+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHH
Confidence 678999999999997 699999999752 233 23444454444433 33444568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988743 8999999999998765 9999999999999999999998
Q ss_pred hcC
Q 002434 533 ATG 535 (922)
Q Consensus 533 ~~~ 535 (922)
...
T Consensus 230 ~~p 232 (353)
T 1oxx_K 230 DNP 232 (353)
T ss_dssp HSC
T ss_pred hCc
Confidence 753
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.5e-45 Score=390.30 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=184.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999985 5899999999999999999999999999999999999999 99999999998888888999999
Q ss_pred EEecCCCCcc-ccHHHHHhcCcC--CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 389 LVTQEPALLS-LSIRDNIAYGRD--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 389 ~v~Q~~~lf~-~ti~eNi~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
||+|++.+|. .|++||+.++.. .+++++.++++..++.+ .......+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999886 599999999752 23555666666655433 334566789999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhh
Q 002434 466 S-------ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 466 ~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+ +|||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998874 5899999999999985 599999999999999999999875
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.1e-45 Score=410.50 Aligned_cols=212 Identities=23% Similarity=0.396 Sum_probs=179.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999994 35799999999999999999999999999999999999999999999999999887654 5789
Q ss_pred eEEecCCCCcc-ccHHHHHhcCcC---CCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGRD---ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|||+|++.+|+ .|++|||.|+.. .+.+ ++.++++..++ +........+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----------EELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----------GGGTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 799999999752 3333 33444444433 33344556789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHhhcC
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~~~~ 535 (922)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++|+....
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988743 799999999999875 59999999999999999999998753
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.7e-45 Score=410.07 Aligned_cols=212 Identities=23% Similarity=0.390 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC------CCHH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN------LKLE 381 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~------~~~~ 381 (922)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999994 3579999999999999999999999999999999999999999999999999876 544
Q ss_pred HHhhcceEEecCCCCcc-ccHHHHHhcCc---CCCHH----HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
.+++||||+|++.+|+ .|++|||.|+. ..+.+ ++.++++..++.+ .......+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCCcccCCHHHHH
Confidence 3578999999999996 79999999873 23332 3444555444433 334455689999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHH
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~e 530 (922)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988743 8999999999998764 99999999999999999999
Q ss_pred HhhcC
Q 002434 531 LLATG 535 (922)
Q Consensus 531 L~~~~ 535 (922)
++...
T Consensus 227 l~~~p 231 (372)
T 1g29_1 227 VYDKP 231 (372)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98653
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.3e-45 Score=388.89 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC--CCCCCcEEEECCEeCCCCCHHHH-hh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWL-RS 385 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~ 385 (922)
|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 89999999995 35799999999999999999999999999999999999 89999999999999988887665 45
Q ss_pred cceEEecCCCCcc-ccHHHHHhcCc----C--CCHH----HHHHHHHHHHHHHhHHHhhccchh-hhcCCCCC-CCHHHH
Q 002434 386 QIGLVTQEPALLS-LSIRDNIAYGR----D--ATLD----QIEEAAKIAHAHTFISSLEKGYET-QVGRAGLA-LTEEQK 452 (922)
Q Consensus 386 ~i~~v~Q~~~lf~-~ti~eNi~~~~----~--~~~~----~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~-LSGGqk 452 (922)
.++||+|+|.+|+ .|++||+.++. . ...+ ++.++++.. |+++ .......+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-----------DWDESYLSRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------TCCGGGGGSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCCCHHHH
Confidence 6999999999987 59999998752 1 1211 222333332 3322 22233345 999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCHH
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTHD 529 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~~ 529 (922)
||++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999885 47899999999999876 5999999999999999987
Q ss_pred H
Q 002434 530 E 530 (922)
Q Consensus 530 e 530 (922)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-44 Score=384.60 Aligned_cols=207 Identities=18% Similarity=0.253 Sum_probs=179.3
Q ss_pred EEEEeEEEEeCCC-CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 309 i~~~~v~f~y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
|+++|++++|++. ...++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999521 01469999999999 9999999999999999999999999 9999999999998754 33 7789
Q ss_pred e-EEecCCCCccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 G-LVTQEPALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~-~v~Q~~~lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+ ||+|++.+ ..|++||+.++. ...++++.++++.. |++ ........+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 999999999864 23344555554443 444 5566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhh-ccC-EEEEEeCCeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NAD-YIAVMDEGRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~D-~i~vl~~G~i~~~G~~~eL~~~ 534 (922)
++|++|||||||++||+.++..+.+.|+++.+ |+|++||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 9999999999875 599 9999999999999999998643
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-43 Score=382.95 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=178.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC--CCCCCcEEEECCEeCCCCCHHHH-h
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKLEWL-R 384 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~--~~~~~G~I~i~g~~i~~~~~~~l-r 384 (922)
.|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 499999999994 35799999999999999999999999999999999999 57999999999999988877665 4
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCc----------CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCC-CC-CCCHHH
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGR----------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA-GL-ALTEEQ 451 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~----------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~-G~-~LSGGq 451 (922)
..|+||+|++.+|+ .|++||+.++. ..+.++..+ .+.+.++.+ |+++...++ .. +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 56999999999986 69999997632 112222211 122233332 444333333 33 599999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc--cCEEEEEeCCeEEEecCH
Q 002434 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMGTH 528 (922)
Q Consensus 452 kQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~D~i~vl~~G~i~~~G~~ 528 (922)
|||++|||||+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 47899999999999875 899999999999999999
Q ss_pred HHHh
Q 002434 529 DELL 532 (922)
Q Consensus 529 ~eL~ 532 (922)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8864
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.9e-44 Score=381.17 Aligned_cols=200 Identities=22% Similarity=0.313 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 35799999999999999999999999999999999999999999998 35689
Q ss_pred eEEecCCCCc-cccHHHHHhcCcC--------CCH---HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 388 GLVTQEPALL-SLSIRDNIAYGRD--------ATL---DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 388 ~~v~Q~~~lf-~~ti~eNi~~~~~--------~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+||+|++.+| ..|++||+.++.. ... +++.++++..+ ++........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN-----------LTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcC-----------ChHHhcCChhhCCHHHHHHH
Confidence 9999999988 5899999998741 122 23334444333 33344556778999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhh-ccCEEEEEeCCeEEEecCHHHHh
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988753 899999999999885 599999999999 9999999987
Q ss_pred hc
Q 002434 533 AT 534 (922)
Q Consensus 533 ~~ 534 (922)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-43 Score=365.13 Aligned_cols=194 Identities=18% Similarity=0.295 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999994 3 7999999999999999999999999999999999999999999999999986 367889
Q ss_pred eEEecCCCCcc-ccHHHHHhcCc-----CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 388 GLVTQEPALLS-LSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 388 ~~v~Q~~~lf~-~ti~eNi~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
+||+|++.+|. .|++||+.++. ...++++.++++.. |++.. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 59999998853 11234444444433 45555 667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 462 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|+ +.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCccc
Confidence 99999999999999999999999999998875 47899999999999887 66655 5566653
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.4e-39 Score=355.68 Aligned_cols=235 Identities=18% Similarity=0.235 Sum_probs=191.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 002434 244 KAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPE 323 (922)
Q Consensus 244 ~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~ 323 (922)
..+-+.+.+++.+... ..++.++...+..+.++..+..|+.++++.+++.....+ ..++..+.|+++||+|+|+
T Consensus 39 ~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 39 AGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG-SWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC-CTHHHHHHHHHTTCCHHHH----
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-cccccCCeEEEEEEEEEcC----
Confidence 3444556665555444 467888999999999999999999999986533211111 1111234589999999995
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.+|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 46999999999999999999999999999999999999 7988 46789999999999998
Q ss_pred -HHhcCcCCCHHHHHHHHHHHHHHHhHHH-hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH
Q 002434 404 -NIAYGRDATLDQIEEAAKIAHAHTFISS-LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 404 -Ni~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~ 481 (922)
||.++.+.++ ++++++.. ||+|++ |.+|||||||| |||++++|+||| ||+||+.+
T Consensus 172 ~ni~~~~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 172 TRAALVDDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp CSCEEEEEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred HhhccCccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 9999765443 34567777 999988 78999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhhcCcHHHHHHHhH
Q 002434 482 ERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (922)
Q Consensus 482 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~~~~~~~~l~~~~ 545 (922)
+..+.. +|||++.++.||+| +|++|+|++.|+|+++ ++.|++++..+
T Consensus 229 ~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~ 275 (305)
T 2v9p_A 229 EDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRL 275 (305)
T ss_dssp CGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTT
T ss_pred HHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHc
Confidence 988862 29999999999999 9999999999999999 67888777543
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1e-34 Score=346.36 Aligned_cols=198 Identities=21% Similarity=0.220 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999942 36999999999999999999999999999999999999999999862 379
Q ss_pred eEEecCCCC-ccccHHHHHhcC-c-CC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPAL-LSLSIRDNIAYG-R-DA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~l-f~~ti~eNi~~~-~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+||||++.+ +..|+.||+... . .. ..+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 568999998764 1 11 122223333332 33334455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeC--CeEEEecCHHHHhh
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE--GRLFEMGTHDELLA 533 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~--G~i~~~G~~~eL~~ 533 (922)
+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 58999999999999875 999999996 88889999988765
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-34 Score=342.99 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|+++.|. + ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 287 ~l~~~~l~~~~~---~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYG---S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEET---T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEEC---C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 489999999994 2 36999999999999999999999999999999999999999999862 369
Q ss_pred eEEecCCCC-ccccHHHHHhcC-c-C-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 388 GLVTQEPAL-LSLSIRDNIAYG-R-D-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 388 ~~v~Q~~~l-f~~ti~eNi~~~-~-~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+||+|++.. +..|+.||+... . . ...+.+.+ .+..+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE---------LLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH---------TTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH---------HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 568999998753 1 1 11122222 22222 34444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeC--CeEEEecCHHHHhh
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE--GRLFEMGTHDELLA 533 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~--G~i~~~G~~~eL~~ 533 (922)
+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999996 78999999988764
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.1e-34 Score=338.08 Aligned_cols=199 Identities=18% Similarity=0.143 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999942 4688899999999999999999999999999999999999999998763 68
Q ss_pred eEEecCCCC-ccccHHHHHhcCc-C---CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 388 GLVTQEPAL-LSLSIRDNIAYGR-D---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 388 ~~v~Q~~~l-f~~ti~eNi~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+|++|++.. +..|++||+.+.. . .....+.++++..+ +.........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN-----------LHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT-----------GGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999875 4789999998643 1 12222333333333 333344566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeC--CeEEEecCHHHHhh
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE--GRLFEMGTHDELLA 533 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~--G~i~~~G~~~eL~~ 533 (922)
++|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|++.++..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998874 48899999999999876 999999986 56677777776543
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-33 Score=348.24 Aligned_cols=204 Identities=24% Similarity=0.358 Sum_probs=154.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
-|+++|++|+|+++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999632 357999999999999999999999999999999999999999999999872 157
Q ss_pred eEEecCCCC-----ccccHHHHHhc-------------------------------------------------------
Q 002434 388 GLVTQEPAL-----LSLSIRDNIAY------------------------------------------------------- 407 (922)
Q Consensus 388 ~~v~Q~~~l-----f~~ti~eNi~~------------------------------------------------------- 407 (922)
+||+|++.. ...|+++|+.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887531 23456665532
Q ss_pred -----------CcC----C--------CHHHHHH----HH---------H--------HHHHHHhHHHhhccchhh--hc
Q 002434 408 -----------GRD----A--------TLDQIEE----AA---------K--------IAHAHTFISSLEKGYETQ--VG 441 (922)
Q Consensus 408 -----------~~~----~--------~~~~~~~----~~---------~--------~~~l~~~i~~l~~g~~t~--vg 441 (922)
+.. . ..+++.+ .. . ...+.+.+..+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 100 0 0000000 00 0 01122233333 45443 24
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 002434 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEG 520 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G 520 (922)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 556789999999999999999999999999999999999999999998765 5799999999999865 9999999999
Q ss_pred eEEEecC
Q 002434 521 RLFEMGT 527 (922)
Q Consensus 521 ~i~~~G~ 527 (922)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9998774
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.8e-33 Score=338.54 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=138.3
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHH---------------------HHHhcCCCCC-------CcEEEECCEeC
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSII---------------------PLMERFYDPT-------LGEVLLDGENI 375 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~---------------------~ll~g~~~~~-------~G~I~i~g~~i 375 (922)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 8899999998 45566666554
Q ss_pred CCCCHHHHhhcceEEecCCCCc--------------------cccHHHHHhcCcCC--CH--HHH-----HHHHHHHHHH
Q 002434 376 KNLKLEWLRSQIGLVTQEPALL--------------------SLSIRDNIAYGRDA--TL--DQI-----EEAAKIAHAH 426 (922)
Q Consensus 376 ~~~~~~~lr~~i~~v~Q~~~lf--------------------~~ti~eNi~~~~~~--~~--~~~-----~~~~~~~~l~ 426 (922)
... .++.+++|+|.+.++ ..|++||+.+.... .+ .+. .++.+..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 322 245667777654432 46899999875311 11 111 1111111
Q ss_pred HhHHHhhccchhh-hcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 002434 427 TFISSLEKGYETQ-VGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIA 502 (922)
Q Consensus 427 ~~i~~l~~g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 502 (922)
+.+..+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 112222 33222 244567899999999999999999998 999999999999999999999998874 589999999
Q ss_pred cCcchhhccCEEEEE------eCCeEEEecCHHHHhhcCc
Q 002434 503 RRLSLIRNADYIAVM------DEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 503 H~l~~~~~~D~i~vl------~~G~i~~~G~~~eL~~~~~ 536 (922)
|+++.+..||+|++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999998889999999 8999999999999987643
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=332.96 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=163.4
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCC-----CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAK-----KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G-----~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
++++|+|+. ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 677889963 245899999999999 7899999999999999999999999999972 11 236
Q ss_pred ceEEecCCC-CccccHHHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEPA-LLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~~-lf~~ti~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++|++|++. .|..|+++|+.... ....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999976 46789999986421 2233344444444433 33344566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeC--CeEEEecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDE--GRLFEMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~--G~i~~~G~~~eL~~~ 534 (922)
.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+++++++.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999876 999999997 999999999999875
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=2.2e-33 Score=334.95 Aligned_cols=197 Identities=19% Similarity=0.252 Sum_probs=156.8
Q ss_pred cEEE--------EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE---------EE
Q 002434 308 NIEF--------RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV---------LL 370 (922)
Q Consensus 308 ~i~~--------~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I---------~i 370 (922)
.|++ +|++++|++ ...+|+|+| +|++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 899999953 225899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHHH--HhhcceEEecCCC----CccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCC
Q 002434 371 DGENIKNLKLEW--LRSQIGLVTQEPA----LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444 (922)
Q Consensus 371 ~g~~i~~~~~~~--lr~~i~~v~Q~~~----lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G 444 (922)
+|.++.+..... .+..+++++|... ++.+|++||+..... .+++.++++..++.+ ......
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~L~~lgL~~-----------~~~~~~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELEN-----------VLDREL 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC--SSCHHHHHHHTTCTT-----------GGGSBG
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH--HHHHHHHHHHcCCCc-----------hhCCCh
Confidence 665543321111 2345888888743 445699999975321 234555655554432 233445
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCC
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEG 520 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G 520 (922)
.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 6799999999999999999999999999999999999999999998874 48999999999998866 9999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=1.5e-31 Score=329.19 Aligned_cols=197 Identities=24% Similarity=0.285 Sum_probs=161.5
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
..|...|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 3588889999995 3579999999999999999999999999999999995 554 5544321 124
Q ss_pred ceEEecCC-CCc-cccHHHHHhcCc-CCCHHHHHHHHHHHHHH-HhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 387 IGLVTQEP-ALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAH-TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 387 i~~v~Q~~-~lf-~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
++|++|++ .++ ..|+.||+.+.. .. .+++.++++..++. +.. .....+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~-----------~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMI-----------AMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHH-----------HSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 78999986 444 579999998621 12 56666666666652 222 2233579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCeEE-EecCHHHHhhc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF-EMGTHDELLAT 534 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~-~~G~~~eL~~~ 534 (922)
.+|+||||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++...
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 99999999999999999999999999988 68999999999999876 9999999999997 68999988653
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=3.5e-33 Score=329.96 Aligned_cols=196 Identities=20% Similarity=0.253 Sum_probs=152.3
Q ss_pred EEE-EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE---------EECCEeCCCC
Q 002434 309 IEF-RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV---------LLDGENIKNL 378 (922)
Q Consensus 309 i~~-~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I---------~i~g~~i~~~ 378 (922)
.++ +|++++|++ ...+|+|+| +|++||+++|+||||||||||+++|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 345 589999953 225899999 999999999999999999999999999999999995 3566554322
Q ss_pred CHHH--HhhcceEEecCCCC----ccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 379 KLEW--LRSQIGLVTQEPAL----LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 379 ~~~~--lr~~i~~v~Q~~~l----f~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.... .+..+++++|+... +.+|+.||+..... .+++.++++..++. ........+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~--~~~~~~~l~~lgl~-----------~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--TGKLEEVVKALELE-----------NVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS--SSCHHHHHHHTTCT-----------TTTTSBGGGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH--HHHHHHHHHHcCCC-----------hhhhCChhhCCHHHH
Confidence 1111 12358899997543 33699999864221 23455555555442 223344567999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCC
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEG 520 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G 520 (922)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998874 48999999999999876 9999999865
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.2e-32 Score=332.78 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=150.9
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh---------------------cCCCCCCcEEEECCEeCCCCCHHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME---------------------RFYDPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~---------------------g~~~~~~G~I~i~g~~i~~~~~~~ 382 (922)
.++|+||||+|++||++||+||||||||||+++|+ +-+.+..|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998754 112334578999998886544211
Q ss_pred Hhh-----------------------------------------cceEEecCCCC-------------------------
Q 002434 383 LRS-----------------------------------------QIGLVTQEPAL------------------------- 396 (922)
Q Consensus 383 lr~-----------------------------------------~i~~v~Q~~~l------------------------- 396 (922)
.+. ..|++.|+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 11333333222
Q ss_pred --------ccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHHHHHhhccCC--
Q 002434 397 --------LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAVLLNP-- 465 (922)
Q Consensus 397 --------f~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRiaiARAl~~~p-- 465 (922)
+..|++||+.+...... ..++. +.+..+ |+. ...+....+||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPK--IKRKL------ETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHH--HHHHH------HHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhh--HHHHH------HHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 13588888887653211 11111 122222 222 2346677899999999999999999887
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCCeEEEecCHHHHhhcCcH
Q 002434 466 -SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLATGDL 537 (922)
Q Consensus 466 -~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G~i~~~G~~~eL~~~~~~ 537 (922)
++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.++.||+|++| ++|+|+++|+++|+.+....
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 5999999999999999999999998875 589999999999999889999999 89999999999999865443
Q ss_pred H
Q 002434 538 Y 538 (922)
Q Consensus 538 ~ 538 (922)
|
T Consensus 645 ~ 645 (670)
T 3ux8_A 645 H 645 (670)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.7e-31 Score=324.75 Aligned_cols=207 Identities=24% Similarity=0.411 Sum_probs=154.9
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHH---------HHHhcCCCCC------Cc------EEEECCEeCCCCCH---
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSII---------PLMERFYDPT------LG------EVLLDGENIKNLKL--- 380 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~---------~ll~g~~~~~------~G------~I~i~g~~i~~~~~--- 380 (922)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4444443333 33 35556555533211
Q ss_pred -------HHH-------------------------------hhcceEEecCCCCcc------------------------
Q 002434 381 -------EWL-------------------------------RSQIGLVTQEPALLS------------------------ 398 (922)
Q Consensus 381 -------~~l-------------------------------r~~i~~v~Q~~~lf~------------------------ 398 (922)
..+ .+..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 011 123578888776553
Q ss_pred ---------ccHHHHHhcCcCCC-HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC---
Q 002434 399 ---------LSIRDNIAYGRDAT-LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP--- 465 (922)
Q Consensus 399 ---------~ti~eNi~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p--- 465 (922)
.|+.|++.|..... .++..++ +..+.-|+ ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~---------L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQV---------LHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHH---------HHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHH---------HHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 45666666544211 1222222 23332232 3468899999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCCeEEEecCHHHHhhcCcHH
Q 002434 466 SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLATGDLY 538 (922)
Q Consensus 466 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G~i~~~G~~~eL~~~~~~~ 538 (922)
+||||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998874 589999999999999999999999 899999999999999877666
Q ss_pred HHH
Q 002434 539 AEL 541 (922)
Q Consensus 539 ~~l 541 (922)
...
T Consensus 908 t~~ 910 (916)
T 3pih_A 908 TGR 910 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-31 Score=313.21 Aligned_cols=197 Identities=17% Similarity=0.263 Sum_probs=149.5
Q ss_pred eEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-----------EECCEeCCCCCHH
Q 002434 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-----------LLDGENIKNLKLE 381 (922)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-----------~i~g~~i~~~~~~ 381 (922)
|++++|.. ....|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 46889953 345788877 699999999999999999999999999999999998 3444443333223
Q ss_pred HHhhcceE--EecCCCC----cc---ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 382 WLRSQIGL--VTQEPAL----LS---LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 382 ~lr~~i~~--v~Q~~~l----f~---~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.+++.+.. .+|.... +. .++.+++........+++.++++..++. ........+||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE-----------NVLKRDIEKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCT-----------GGGGSCTTTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCc-----------chhCCChHHCCHHHH
Confidence 33344432 3332211 11 2567776654444556667776666543 233445578999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc-cCEEEEEeCCeEE
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~ 523 (922)
||++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|..+
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 99999999999999999999999999999999999998875 48899999999999876 9999999987543
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.6e-31 Score=313.20 Aligned_cols=192 Identities=17% Similarity=0.267 Sum_probs=149.0
Q ss_pred eEEEEeCCCCCCCcccceeEEe-cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-----------EECCEeCCCCCH
Q 002434 313 NVYFSYLSRPEIPILSGFYLTV-PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-----------LLDGENIKNLKL 380 (922)
Q Consensus 313 ~v~f~y~~~~~~~vL~~isl~i-~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-----------~i~g~~i~~~~~ 380 (922)
+++.+|..+ -++-..|.+ ++||++||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567889532 244555555 4899999999999999999999999999999998 677766643322
Q ss_pred HHH------hhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 381 EWL------RSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 381 ~~l------r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
... ...+.++.|.+.++.+|+++++.... ..+++.++++..++.. .......+||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTN-----------LWNKDANILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGG-----------GTTSBGGGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHH
Confidence 211 12345566666777889999875322 1234455555555432 2233446799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhc-cCEEEEEeCCe
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~D~i~vl~~G~ 521 (922)
++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999999998889999999999998876 99999998764
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=2.6e-29 Score=306.91 Aligned_cols=212 Identities=22% Similarity=0.324 Sum_probs=157.8
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHH-HhcCC-------CC---------------
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL-MERFY-------DP--------------- 363 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l-l~g~~-------~~--------------- 363 (922)
..|+++|+++ .+|+||||+|++|++++|+|+||||||||++. |.|++ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999975 15999999999999999999999999999996 66443 22
Q ss_pred ---CCc-------EEEECCEeCCCCCH----------HHHhhcc---------eEEecC---------------------
Q 002434 364 ---TLG-------EVLLDGENIKNLKL----------EWLRSQI---------GLVTQE--------------------- 393 (922)
Q Consensus 364 ---~~G-------~I~i~g~~i~~~~~----------~~lr~~i---------~~v~Q~--------------------- 393 (922)
.+| .|.+||.++...+. +.+|+.+ +|.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68999988864432 2334322 232221
Q ss_pred -CCCc-------------------------cccHHHHHhcC--------cCCCHHHHHHHHHHHHHHHhHHHhhccchh-
Q 002434 394 -PALL-------------------------SLSIRDNIAYG--------RDATLDQIEEAAKIAHAHTFISSLEKGYET- 438 (922)
Q Consensus 394 -~~lf-------------------------~~ti~eNi~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t- 438 (922)
-.++ ..||.||+.+. ... .+. ....+.+..+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~--~~~------~~~~~~L~~~--gL~~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE--SAI------FRALDTLREV--GLGYL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS--HHH------HHHHHHHHHT--TCTTS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc--hHH------HHHHHHHHHc--CCCcc
Confidence 1111 13556665432 111 111 1122344444 4444
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEE
Q 002434 439 QVGRAGLALTEEQKIKLSIARAVLLN---PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 439 ~vge~G~~LSGGqkQRiaiARAl~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i 514 (922)
.++....+|||||||||+|||+|+++ |+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.++.||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 35778889999999999999999996 69999999999999999999999998874 689999999999999889999
Q ss_pred EEE------eCCeEEEecCHHHHhhcCc
Q 002434 515 AVM------DEGRLFEMGTHDELLATGD 536 (922)
Q Consensus 515 ~vl------~~G~i~~~G~~~eL~~~~~ 536 (922)
++| ++|+|++.|+++++.+...
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 999 7999999999999987543
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=6e-29 Score=285.68 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=153.2
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC--------------------------------------CCCc
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--------------------------------------PTLG 366 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~--------------------------------------~~~G 366 (922)
..+++++|++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3699999999999 999999999999999999966653 4578
Q ss_pred EEEECCEeCCCCCHHHHhhc-ceEEecCCCCccccHHHHHhcCcCCCHH----------HHHHHHHH-------------
Q 002434 367 EVLLDGENIKNLKLEWLRSQ-IGLVTQEPALLSLSIRDNIAYGRDATLD----------QIEEAAKI------------- 422 (922)
Q Consensus 367 ~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~ti~eNi~~~~~~~~~----------~~~~~~~~------------- 422 (922)
++++||.++...+..++.+. +++++|++.++..+..++..+-...... ++.++.+.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999987777777776 7999999988876666555443221100 00000000
Q ss_pred -----------------------------------HHHHHhHHHh--h----------------ccchh---hhcCCCCC
Q 002434 423 -----------------------------------AHAHTFISSL--E----------------KGYET---QVGRAGLA 446 (922)
Q Consensus 423 -----------------------------------~~l~~~i~~l--~----------------~g~~t---~vge~G~~ 446 (922)
..+.+.+..+ | .|.+. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0011111111 1 12222 23444444
Q ss_pred --------CCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEE
Q 002434 447 --------LTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 447 --------LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~v 516 (922)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998888999999999999888999999
Q ss_pred E----eCCeEEEec
Q 002434 517 M----DEGRLFEMG 526 (922)
Q Consensus 517 l----~~G~i~~~G 526 (922)
| ++|+++...
T Consensus 368 l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 368 VEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEeccCCceEEEE
Confidence 9 999998653
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=2.9e-29 Score=306.34 Aligned_cols=214 Identities=20% Similarity=0.318 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh-cC----C---CCCCc-------------
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-RF----Y---DPTLG------------- 366 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-g~----~---~~~~G------------- 366 (922)
.|+++|++. ..|+||||+|++|++++|+|+||||||||+++|+ |. + .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888852 3699999999999999999999999999999854 21 1 12233
Q ss_pred EEEECCEeCCCCC---HH-------HHh---------hcceEEecCCCCc------------------------------
Q 002434 367 EVLLDGENIKNLK---LE-------WLR---------SQIGLVTQEPALL------------------------------ 397 (922)
Q Consensus 367 ~I~i~g~~i~~~~---~~-------~lr---------~~i~~v~Q~~~lf------------------------------ 397 (922)
.|.+||.++...+ +. ..| +.+||++|...+-
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788988875322 11 111 3468888853210
Q ss_pred -------------------------cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHH
Q 002434 398 -------------------------SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQ 451 (922)
Q Consensus 398 -------------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGq 451 (922)
..|+.||+.+..... ++.+ ..+.+..+ |+.. ..+....+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKR------KLETLYDV--GLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHHH------HHHHHHHc--CCCcccccCchhhCCHHH
Confidence 125566665543221 1111 12234443 4554 5677888999999
Q ss_pred HHHHHHHHhhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCCe
Q 002434 452 KIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGR 521 (922)
Q Consensus 452 kQRiaiARAl~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G~ 521 (922)
|||++|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998874 589999999999999889999999 7999
Q ss_pred EEEecCHHHHhhcCcHHH
Q 002434 522 LFEMGTHDELLATGDLYA 539 (922)
Q Consensus 522 i~~~G~~~eL~~~~~~~~ 539 (922)
|++.|+++++.+....|.
T Consensus 931 Iv~~g~~~el~~~~~~~t 948 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKESHT 948 (972)
T ss_dssp EEEEESHHHHHTCTTCHH
T ss_pred EEEecCHHHHHhCchhHH
Confidence 999999999987654443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-32 Score=317.21 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-E-EEECCEeCCCCCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-E-VLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~-I~i~g~~i~~~~~~~lr~~ 386 (922)
++++||+|+| .++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|+.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 5566666655 279999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred ceEEecCCCCcc----ccHHHHHhcCcCC-----CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH
Q 002434 387 IGLVTQEPALLS----LSIRDNIAYGRDA-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (922)
Q Consensus 387 i~~v~Q~~~lf~----~ti~eNi~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai 457 (922)
++||||++.+|. .|++||+ ++... ..+++.++++.. |++.... ..+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999986543 5899999 76421 111122222222 4444332 67899999999999
Q ss_pred HHh--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcc------hhh-ccCE-----EEEEe
Q 002434 458 ARA--VLLNPSI----LLLDE-VTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS------LIR-NADY-----IAVMD 518 (922)
Q Consensus 458 ARA--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~------~~~-~~D~-----i~vl~ 518 (922)
||| |+.+|++ ||||| ||++||+. ...+.+.+++. ++|+|+|+|+.+ .++ .||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777654 789999999987 544 4999 99999
Q ss_pred -CCeEEEecCHHHHhh
Q 002434 519 -EGRLFEMGTHDELLA 533 (922)
Q Consensus 519 -~G~i~~~G~~~eL~~ 533 (922)
+|+|+ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999988854
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.3e-28 Score=301.85 Aligned_cols=216 Identities=19% Similarity=0.318 Sum_probs=158.0
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh-----cCCC---CCCcE-----------
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-----RFYD---PTLGE----------- 367 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-----g~~~---~~~G~----------- 367 (922)
..|+++|++. .+|+||||+|++|++++|+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999851 3699999999999999999999999999999853 2222 23443
Q ss_pred --EEECCEeCCCCC---HH-------HH---------hhcceEEecCCCC---------------------c--------
Q 002434 368 --VLLDGENIKNLK---LE-------WL---------RSQIGLVTQEPAL---------------------L-------- 397 (922)
Q Consensus 368 --I~i~g~~i~~~~---~~-------~l---------r~~i~~v~Q~~~l---------------------f-------- 397 (922)
|.+|+.++...+ +. .+ .+..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 556666653221 11 11 2346788775321 0
Q ss_pred --------------------------cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHH
Q 002434 398 --------------------------SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEE 450 (922)
Q Consensus 398 --------------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGG 450 (922)
..|+.||+.+..... ++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GVHR------YLRTLVDV--GLGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HHHH------HHHHHHHT--TGGGSBTTCCGGGSCHH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HHHH------HHHHHHHc--CCCcccccCccccCCHH
Confidence 124455555433211 1111 12233443 4544 567888999999
Q ss_pred HHHHHHHHHhhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCC
Q 002434 451 QKIKLSIARAVLLNP---SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEG 520 (922)
Q Consensus 451 qkQRiaiARAl~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G 520 (922)
|||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998874 589999999999999889999999 689
Q ss_pred eEEEecCHHHHhhcCcHHHH
Q 002434 521 RLFEMGTHDELLATGDLYAE 540 (922)
Q Consensus 521 ~i~~~G~~~eL~~~~~~~~~ 540 (922)
+|++.|+++++.+....|..
T Consensus 948 ~Iv~~G~~~el~~~~~~~t~ 967 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPASYTG 967 (993)
T ss_dssp EEEEEECHHHHHHCTTCHHH
T ss_pred EEEEecCHHHHHhCCHHHHH
Confidence 99999999999876544443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=3e-26 Score=254.51 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=142.1
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC----------------------------------------------
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY---------------------------------------------- 361 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~---------------------------------------------- 361 (922)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999998443
Q ss_pred ----CCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHHHHHhcCcCCC----H---------HHHHHHHHHH
Q 002434 362 ----DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDAT----L---------DQIEEAAKIA 423 (922)
Q Consensus 362 ----~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~----~---------~~~~~~~~~~ 423 (922)
.+.+|++.+||.+++..+...+...+++.+|+..++ .+++.+|+....... + ..+.++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999876555666677889999988766 699999987642100 0 0111122211
Q ss_pred H---------------H-HHhHHHhhccchhhhc------CCCCCCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCC
Q 002434 424 H---------------A-HTFISSLEKGYETQVG------RAGLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGL 477 (922)
Q Consensus 424 ~---------------l-~~~i~~l~~g~~t~vg------e~G~~LSGGqkQRiaiARAl~----~~p~iliLDEpts~L 477 (922)
. + ......++.|+++.++ .....||||||||++|||||. ++|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0 0 0011234556666543 235689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEE--EEEeCCeE
Q 002434 478 DFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI--AVMDEGRL 522 (922)
Q Consensus 478 D~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i--~vl~~G~i 522 (922)
|+.....+.+.|+++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887788999999998888889987 88888864
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=5.5e-28 Score=251.25 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=101.1
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
..+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++|+||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689996 89999999999999999999999999 99999994 333321 2234577899999997 66
Q ss_pred HH-hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHH
Q 002434 404 NI-AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (922)
Q Consensus 404 Ni-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~ 482 (922)
|+ .++... .+.+........+.+.+.. | | |||||++|||||+.+|++|||||||++ ++
T Consensus 78 nl~~~~~~~-~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLRPL-HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTHHH-HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHHH-HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 76 443100 0000000000011111111 2 1 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 483 ~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
..+.+.|+++.+++|+| +||+++.+.. +...++|
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 88889888775578888 9999886543 3344555
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=4.2e-24 Score=241.05 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=76.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEE
Q 002434 442 RAGLALTEEQKIKLSIARAVL------LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 442 e~G~~LSGGqkQRiaiARAl~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i 514 (922)
....+||||||||++|||||+ ++|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.++.||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455689999999999999999 7999999999999999999999999998874 589999999999998889999
Q ss_pred EEEeCCeEEE
Q 002434 515 AVMDEGRLFE 524 (922)
Q Consensus 515 ~vl~~G~i~~ 524 (922)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=1.9e-25 Score=225.20 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=108.5
Q ss_pred ceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC--CccccHHHHHh
Q 002434 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA--LLSLSIRDNIA 406 (922)
Q Consensus 329 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf~~ti~eNi~ 406 (922)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 223343 67788763 22333333221
Q ss_pred cCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH-----
Q 002434 407 YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA----- 481 (922)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~----- 481 (922)
.. ....+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.+
T Consensus 64 -----------~~--------~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 -----------YI--------VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp -----------HH--------HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred -----------HH--------HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 11 1122344665555433 4569999999999999999999999999999999994
Q ss_pred -----------HHHHHHHHHHHc-CCCeEEEEecCcchhhccCEE
Q 002434 482 -----------ERAVQEALDLLM-LGRSTIIIARRLSLIRNADYI 514 (922)
Q Consensus 482 -----------~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i 514 (922)
...+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777766553 489999999999999887765
No 71
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=3.8e-27 Score=247.10 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=120.4
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-HHHhhcceEEecCCCCccc----
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQIGLVTQEPALLSL---- 399 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~v~Q~~~lf~~---- 399 (922)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887755432 2356789999999876642
Q ss_pred -------cHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHH-----HHhhccCCCE
Q 002434 400 -------SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI-----ARAVLLNPSI 467 (922)
Q Consensus 400 -------ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiai-----ARAl~~~p~i 467 (922)
++.+| .+|. ..+++.++++. +....++ .+||||||||++| ||+++.+|++
T Consensus 87 ~~~l~~~~~~~~-~~g~--~~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT--LKSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE--EHHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC--cHHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 23333 2222 23444444432 1122222 6799999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 468 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
++|||||+++|.+++..+.+.+.+..+++| ++| +..+|.|+++++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988777777 677 577999998764
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=3.8e-25 Score=224.42 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=109.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEE 418 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 418 (922)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+ ++.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhhc-------
Confidence 689999999999999999999985 667777654443224577899999987 233333 11100
Q ss_pred HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 002434 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA-----VLLNPSILLLDE--VTGGLDFEAERAVQEALDL 491 (922)
Q Consensus 419 ~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA-----l~~~p~iliLDE--pts~LD~~~~~~i~~~l~~ 491 (922)
.+ .+..++..+.+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.+++
T Consensus 64 -------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 64 -------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 00 0134677788999999999999996 999999999999 9999999999999988865
Q ss_pred HcCCCeEEEEec---Ccchhhc-cCEEEEEeCCeEEE
Q 002434 492 LMLGRSTIIIAR---RLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 492 ~~~~~t~i~itH---~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
.+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4667899986 5666665 777 5677766
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=1.5e-25 Score=249.12 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=116.6
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEE
Q 002434 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (922)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 390 (922)
|++++| | .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 555555 5 248999999999999999999999999999999999999999999999975 23222345556655
Q ss_pred ecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEE
Q 002434 391 TQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470 (922)
Q Consensus 391 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliL 470 (922)
+| |||+||++|||||.++|++|||
T Consensus 223 ~g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 223 FG--------------------------------------------------------GNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp CB--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEE
T ss_pred eC--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEE
Confidence 30 7899999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCcchhhccCEEEEEeCCeE
Q 002434 471 DEVTGGLDFEAERAVQEALDLLMLGR-STIIIARRLSLIRNADYIAVMDEGRL 522 (922)
Q Consensus 471 DEpts~LD~~~~~~i~~~l~~~~~~~-t~i~itH~l~~~~~~D~i~vl~~G~i 522 (922)
||||+. .+.+.|+.+..++ |+|+++|+++....||||++|++|+.
T Consensus 247 dE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 247 GELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred cCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 999982 2455666666665 79999999998888999999988753
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=4.4e-25 Score=250.95 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=130.9
Q ss_pred CCcccceeEEecCCC--------------------EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHH
Q 002434 324 IPILSGFYLTVPAKK--------------------AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 324 ~~vL~~isl~i~~G~--------------------~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~l 383 (922)
..+|+||||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH--HHHHHHHHHhh
Q 002434 384 RSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE--QKIKLSIARAV 461 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG--qkQRiaiARAl 461 (922)
| .++++|++...+.|+.||+.++.. .+++.+.++..++.+ ++..+ . |||| ||||++||||+
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHH
Confidence 1 289999976557899999877642 234555555554432 12222 2 8999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEecCcch--hhc-cCEE
Q 002434 462 LL----------NPSILLLDEVTGGLDFEAERAVQEALDLLM------L----GRSTIIIARRLSL--IRN-ADYI 514 (922)
Q Consensus 462 ~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~----~~t~i~itH~l~~--~~~-~D~i 514 (922)
.+ +|++++|||||++||+.++..+.+.|+++. . .+++++.||.++. ++. ||+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999999988887762 1 2456667798875 554 6666
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=3.5e-25 Score=254.69 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=156.1
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE---eCCCCC----
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE---NIKNLK---- 379 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~---~i~~~~---- 379 (922)
..++++|+++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999952 35799999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhhcceEEecC-CCCc-cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCCCCCCCHHHHHHH
Q 002434 380 -LEWLRSQIGLVTQE-PALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKL 455 (922)
Q Consensus 380 -~~~lr~~i~~v~Q~-~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~G~~LSGGqkQRi 455 (922)
...+++.|+||+|+ ..++ ..|+.+|+.+.. ++... .+.+. .+-+...+||||| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~~--------------~~~~v~~~ld~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFRD--------------RGQHVLLIMDSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHHT--------------TTCEEEEEEECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHHh--------------CCCCHHHHHHhHHHHHHHH-HHH
Confidence 35678899999995 3344 579999987632 11110 01000 0112356799999 999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-----GR-----STIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 456 aiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
+|| +++|++ |++||+.++..+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+.+
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 889998 999999999999999988754 43 8999999999 677999999999999999
Q ss_pred cCHHHHhh
Q 002434 526 GTHDELLA 533 (922)
Q Consensus 526 G~~~eL~~ 533 (922)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99988753
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=1.8e-21 Score=238.06 Aligned_cols=100 Identities=25% Similarity=0.374 Sum_probs=90.8
Q ss_pred cchhh-hcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhc
Q 002434 435 GYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN 510 (922)
Q Consensus 435 g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 510 (922)
|++.. .+....+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+||++.++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 55543 56777899999999999999999999 4999999999999999999999998875 48999999999999988
Q ss_pred cCEEEEE------eCCeEEEecCHHHHhhc
Q 002434 511 ADYIAVM------DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 511 ~D~i~vl------~~G~i~~~G~~~eL~~~ 534 (922)
||+|++| ++|+++..|+++++.+.
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999 79999999999999875
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=5.5e-23 Score=225.57 Aligned_cols=176 Identities=16% Similarity=0.241 Sum_probs=126.9
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC----HHHH--hhcceEEecCCC-Ccc-
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWL--RSQIGLVTQEPA-LLS- 398 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~----~~~l--r~~i~~v~Q~~~-lf~- 398 (922)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 34688899999999999999999999999999999999999999999987653 1233 457999999998 765
Q ss_pred ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCC
Q 002434 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGG 476 (922)
Q Consensus 399 ~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~ 476 (922)
.|++||+.++.....+ ...++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 170 ~~v~e~l~~~~~~~~d--~~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD--VVLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCc--chHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 7999999865310000 001111121111 11222 2377 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEec---------Ccchhhc-cCEEEEEeCCeEE
Q 002434 477 LDFEAERAVQEALDLLMLGRSTIIIAR---------RLSLIRN-ADYIAVMDEGRLF 523 (922)
Q Consensus 477 LD~~~~~~i~~~l~~~~~~~t~i~itH---------~l~~~~~-~D~i~vl~~G~i~ 523 (922)
+|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998653 12221 24789999999 3344433 7899999999653
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.84 E-value=4.7e-23 Score=222.74 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=96.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIE 417 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~ 417 (922)
.++||||||||||||+++|+|++.|++|+|.++|.++.. ...++.++|++|++.++. .||.||+.||.....++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 234578999999999885 6999999998632222222
Q ss_pred HHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCe
Q 002434 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497 (922)
Q Consensus 418 ~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 497 (922)
+.+......++...++. .||||||||+++|||++. +++|||||++||+... +.++.+.+..+
T Consensus 81 ~~i~~~~~~~~~~~~~~-----------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKE-----------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSKVVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhhhHH-----------hcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHhcCc
Confidence 22222222333333332 599999999999999886 9999999999999873 23333434489
Q ss_pred EEEEecCcchh
Q 002434 498 TIIIARRLSLI 508 (922)
Q Consensus 498 ~i~itH~l~~~ 508 (922)
+|+|.|+.+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99999987665
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=4.1e-24 Score=235.63 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=114.9
Q ss_pred CCcccEEEEeEEEEeCCCCCCCcccceeEE-----------------------ecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLT-----------------------VPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 304 ~~~g~i~~~~v~f~y~~~~~~~vL~~isl~-----------------------i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
..++.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|+
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3456799999999993 578888775 899999999999999999999999999
Q ss_pred CCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhccch-
Q 002434 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYE- 437 (922)
Q Consensus 361 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~- 437 (922)
++|..|. +++++|+|++.+++.|++||+.+.. ...+. .....+.+++..+..|+.
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSDY 171 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCSC
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCccc
Confidence 9998664 3799999999999889999997642 11110 011223344555544443
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCH
Q 002434 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479 (922)
Q Consensus 438 t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~ 479 (922)
.. ...|||||+||+++|||++.+|+|||||||++.+|+
T Consensus 172 ~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 172 AC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 33 347999999999999999999999999999999986
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=1e-20 Score=211.77 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEE
Q 002434 446 ALTEEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~v 516 (922)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998764 78888999 454 8999999
Q ss_pred EeCCeEEEecCHHHH
Q 002434 517 MDEGRLFEMGTHDEL 531 (922)
Q Consensus 517 l~~G~i~~~G~~~eL 531 (922)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=4.9e-22 Score=222.10 Aligned_cols=173 Identities=16% Similarity=0.227 Sum_probs=127.3
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC----HHHH--hhcceEEecCCC-Ccc-c
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWL--RSQIGLVTQEPA-LLS-L 399 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~----~~~l--r~~i~~v~Q~~~-lf~-~ 399 (922)
+.+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... +..+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999987643 1223 567999999997 664 7
Q ss_pred cHHHHHhcCcCC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCC
Q 002434 400 SIRDNIAYGRDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGG 476 (922)
Q Consensus 400 ti~eNi~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~ 476 (922)
|++||+.++... .+. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999875310 000 01111121111 11122 2377 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEec---------Ccchhhc-cCEEEEEeCCeE
Q 002434 477 LDFEAERAVQEALDLLMLGRSTIIIAR---------RLSLIRN-ADYIAVMDEGRL 522 (922)
Q Consensus 477 LD~~~~~~i~~~l~~~~~~~t~i~itH---------~l~~~~~-~D~i~vl~~G~i 522 (922)
+|+.++.. .+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986532 2221 24789999999 3344433 789999999864
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=8.6e-23 Score=212.06 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=109.7
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIR 402 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~ 402 (922)
.++++| .+|++|++++|+||||||||||+++|+|+++. |.+++.....-.....++.++|++|++.+|. .|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999863 4454422111111223568999999998875 5777
Q ss_pred HHHhc-----C--c--CCCHHHHHHHHH----------HHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 403 DNIAY-----G--R--DATLDQIEEAAK----------IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 403 eNi~~-----~--~--~~~~~~~~~~~~----------~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+|+.. + . ..+.+++.+.++ ..++.+.....| ..|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 77642 1 1 122333333222 223322222222 1233 8999
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEe
Q 002434 464 NPSILLLDEVTGGL----DFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMD 518 (922)
Q Consensus 464 ~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~ 518 (922)
+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7778899999888874 47899999999998865 99999985
No 83
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=1.2e-23 Score=226.13 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=144.6
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCEeCCCCCHHHHhhcceEEec-----CCCCcc
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWLRSQIGLVTQ-----EPALLS 398 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q-----~~~lf~ 398 (922)
++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 5899999 9999999999999999999999999999998 999999998876543 345788888 666677
Q ss_pred ccHHHHHhcCcCC-------CHHHHHHHHHHHHH-----------------HHh------------HHHhhccchhhhcC
Q 002434 399 LSIRDNIAYGRDA-------TLDQIEEAAKIAHA-----------------HTF------------ISSLEKGYETQVGR 442 (922)
Q Consensus 399 ~ti~eNi~~~~~~-------~~~~~~~~~~~~~l-----------------~~~------------i~~l~~g~~t~vge 442 (922)
.+++.++....+. +.+.+.++++.+.. +.. -..+++++++.|++
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~q 168 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 168 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEE
Confidence 8899998875433 66666666655421 111 12467899999999
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEecCcc
Q 002434 443 AGLALTEEQKIKLSIARAVLLNPSI--LLLDEVTGGLDFEA---------ERAVQEALDLLMLGRSTIIIARRLS 506 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl~~~p~i--liLDEpts~LD~~~---------~~~i~~~l~~~~~~~t~i~itH~l~ 506 (922)
++..+||| ||++++|+++.+|++ +|+||+|+++|... +..++++++...+|+|++.++||++
T Consensus 169 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 169 RLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 99999999 999999999999999 99999999999873 4567888888899999999999976
No 84
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.80 E-value=2.4e-22 Score=202.08 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=88.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCEeCCCCC---HHHHh-hcce----EEecCCCCccccHHHHHh
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLK---LEWLR-SQIG----LVTQEPALLSLSIRDNIA 406 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~~i~~~~---~~~lr-~~i~----~v~Q~~~lf~~ti~eNi~ 406 (922)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988876 67788 5788 899999988 211
Q ss_pred cCcCCCHHHHHHHHHHHHHHHhHHH-hhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 407 YGRDATLDQIEEAAKIAHAHTFISS-LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
+ + ++. .+++++++.. +| ||||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~---~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V---S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C---C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C---C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 121 6789999999 99 999999995 9999999999999999999863
No 85
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.79 E-value=8.9e-23 Score=230.55 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=145.8
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCEeCCCCCHHHHhhcceEEec-----CCCCcc
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWLRSQIGLVTQ-----EPALLS 398 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q-----~~~lf~ 398 (922)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3567765 8999999999999999999999999999998 899987776653 2 35778999999 888999
Q ss_pred ccHHHHHhcCcCC-------CHHHHHHHHHHHHHH-----------------Hh------------HHHhhccchhhhcC
Q 002434 399 LSIRDNIAYGRDA-------TLDQIEEAAKIAHAH-----------------TF------------ISSLEKGYETQVGR 442 (922)
Q Consensus 399 ~ti~eNi~~~~~~-------~~~~~~~~~~~~~l~-----------------~~------------i~~l~~g~~t~vge 442 (922)
.++++|+....+. +.+.+..+++.++.. .. ...++.++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999986444 677777777766421 11 12367899999999
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEecCcch
Q 002434 443 AGLALTEEQKIKLSIARAVLLNPSI--LLLDEVTGGLDFE----A-----ERAVQEALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 443 ~G~~LSGGqkQRiaiARAl~~~p~i--liLDEpts~LD~~----~-----~~~i~~~l~~~~~~~t~i~itH~l~~ 507 (922)
++..+||| ||+++||+++.+|+| +|+||+|++||.. + +..++++++...+|+|++.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 899999999999999 9999999999965 2 34567888888899999999999873
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=3.7e-21 Score=214.89 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=145.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC-------CCH
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN-------LKL 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~-------~~~ 380 (922)
-++.+++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999952 45799999 9999999999999999999999999999999999999999865221 122
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhh-hcCCCCCCCHHHHHHHHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ-VGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~-vge~G~~LSGGqkQRiaiAR 459 (922)
..+++.+.+++|... ...+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 234455666665321 112334444444444333322 232211 113456899999 999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEecCcchhhccCEEEEEeCCeEEEecCHHHH
Q 002434 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM---LGR-----STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 460 Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL 531 (922)
+.+|++ |+|+|+.....+.+.++++. .|. |++++||+++ -.-||++++|.+|+|+.+|+..++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 588887 99999999999999998875 266 8899999998 556999999999999999988776
Q ss_pred h
Q 002434 532 L 532 (922)
Q Consensus 532 ~ 532 (922)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 3
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=7.2e-21 Score=225.00 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=123.1
Q ss_pred CCCcccceeE-EecCCCEEEEeCCCCCcHHHHHHH--HhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccc
Q 002434 323 EIPILSGFYL-TVPAKKAVALVGRNGSGKSSIIPL--MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSL 399 (922)
Q Consensus 323 ~~~vL~~isl-~i~~G~~vaivG~sGsGKSTl~~l--l~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ 399 (922)
+.++|+++|+ .|++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+||++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 4679999999 999999999999999999999999 6899999999999999873 223344567899999987521
Q ss_pred cHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCC---
Q 002434 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG--- 476 (922)
Q Consensus 400 ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~--- 476 (922)
+|+.+.....+++..++++..++.+.....+. .|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~g-------------~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 ---GKLFILDASPDPEGQEVVGGFDLSALIERINY-----------AIQKY-------------RARRVSIDSVTSVFQQ 153 (525)
T ss_dssp ---TSEEEEECCCCSSCCSCCSSHHHHHHHHHHHH-----------HHHHH-------------TCSEEEEECSTTTSTT
T ss_pred ---CcEEEEecCcccchhhhhcccCHHHHHHHHHH-----------HHHHc-------------CCCEEEECCHHHHHHh
Confidence 11211110000111122233333333333332 35565 4779999999984
Q ss_pred --CCHHHHHHHHHHHHHHc-CCCeEEEEecCcchh---------hc-cCEEEEEeCCeE
Q 002434 477 --LDFEAERAVQEALDLLM-LGRSTIIIARRLSLI---------RN-ADYIAVMDEGRL 522 (922)
Q Consensus 477 --LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~---------~~-~D~i~vl~~G~i 522 (922)
+|+..++.+.+.++.+. .|+|+|+++|+++.+ .. ||+|++|++|++
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 58899999999888774 489999999999874 45 999999999653
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=1.6e-21 Score=199.44 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=120.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHH
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQI 416 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 416 (922)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.+++ .++++++|++|+. .++ ++|+..-. ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~-~~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG-LEPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC-CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc-ccCC--
Confidence 78999999999999999999999999 999 999999886553 4688999999986 332 22322100 0000
Q ss_pred HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH-HHHH---hhccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 002434 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL-SIAR---AVLLNPSILLLDE--VTGGLDFEAERAVQEALD 490 (922)
Q Consensus 417 ~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi-aiAR---Al~~~p~iliLDE--pts~LD~~~~~~i~~~l~ 490 (922)
+...+..+|+.+..+|||||+++ ++++ |+.++|++||||| ||..+|....+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01123478899999999999999 5566 7899999999999 898899987777777665
Q ss_pred HHcCCCeEEE--Ee--cCcchhhccCEEEEEeCCeEEEec
Q 002434 491 LLMLGRSTII--IA--RRLSLIRNADYIAVMDEGRLFEMG 526 (922)
Q Consensus 491 ~~~~~~t~i~--it--H~l~~~~~~D~i~vl~~G~i~~~G 526 (922)
..+|+|+ ++ |+.+ ...+|+|..+++|+|++-.
T Consensus 134 ---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 ---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred ---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 2445554 34 9876 5567888888999998754
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=4.6e-19 Score=218.46 Aligned_cols=168 Identities=23% Similarity=0.316 Sum_probs=119.1
Q ss_pred HHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhh
Q 002434 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE 433 (922)
Q Consensus 354 ~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 433 (922)
..|.-+.+.|..|+|.++|.++.++....+.+.++++.+-. .+..++ ....++.+..+ ...+++..+
T Consensus 385 ~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~------~~~~~~~~~~~--~~~~~L~~v- 451 (916)
T 3pih_A 385 SVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERER------EIVGELLKEIE--KRLEFLVDV- 451 (916)
T ss_dssp TTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTT------TTHHHHHHHHH--HHHHHHHTT-
T ss_pred hhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHH------HHHHhhHHHHH--HHHHHHHHc-
Confidence 34445678999999999999875543333333333322110 000000 00011111111 112233333
Q ss_pred ccchhh-hcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhh
Q 002434 434 KGYETQ-VGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR 509 (922)
Q Consensus 434 ~g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~ 509 (922)
|++.. ......+||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++. +|+|+|+|+|+++.+.
T Consensus 452 -gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~ 530 (916)
T 3pih_A 452 -GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR 530 (916)
T ss_dssp -TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH
T ss_pred -CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 55432 456678999999999999999999887 999999999999999999999999885 4899999999999999
Q ss_pred ccCEEEEE------eCCeEEEecCHHHHhhcC
Q 002434 510 NADYIAVM------DEGRLFEMGTHDELLATG 535 (922)
Q Consensus 510 ~~D~i~vl------~~G~i~~~G~~~eL~~~~ 535 (922)
.||+|++| ++|+|+++|+++++++..
T Consensus 531 ~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 531 NADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp TCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred hCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999 899999999999998753
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=9.4e-19 Score=206.50 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCC-CHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCe
Q 002434 445 LAL-TEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (922)
Q Consensus 445 ~~L-SGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~ 521 (922)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999998877899999999999998899999996653
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=4.2e-19 Score=194.39 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=122.7
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EEEECCEeCCCCCHHHHhhcceEEecCCCCccccHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 402 (922)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 3579999999999999999999999999999999999999888 77554432 3556666666666555432 223
Q ss_pred HHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH-HHHHHHHHhhccCCCEEEEeCCCC---C--
Q 002434 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ-KIKLSIARAVLLNPSILLLDEVTG---G-- 476 (922)
Q Consensus 403 eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq-kQRiaiARAl~~~p~iliLDEpts---~-- 476 (922)
+|+..+. .+++++.++++. .+...+-+ +.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 96 ~~l~~~~-~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 96 DSLKREI-IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHHH-HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred cccccCC-CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 4444321 122233322221 11111111 223335689999 77777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHHc--CCCeEEEEecCc--c--------------------hhh-ccCEEEEEeCCeE
Q 002434 477 -LDF-EAERAVQEALDLLM--LGRSTIIIARRL--S--------------------LIR-NADYIAVMDEGRL 522 (922)
Q Consensus 477 -LD~-~~~~~i~~~l~~~~--~~~t~i~itH~l--~--------------------~~~-~~D~i~vl~~G~i 522 (922)
+|. .....+.+.|+++. .+.|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 55567777787764 388999999995 4 454 4999999999875
No 92
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.76 E-value=7.6e-22 Score=203.62 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=124.9
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccH
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD-------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 401 (922)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78898 699999999999999876 79999999999
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH-hhccCCCEEEEeCCCCCCCHH
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR-AVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR-Al~~~p~iliLDEpts~LD~~ 480 (922)
.+|+ +|. ++++++++++......+ ...|+|+++.... ++ .|| +++.+|++++|||+|+++|.+
T Consensus 77 ~~n~-~g~--~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YGT--SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EEE--EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CCC--CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 764 57788888765321111 1246777776432 22 677 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 481 AERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 481 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
+++.|++.|....++ +.++| ++ ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998776544 34567 44 78999998874
No 93
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=2.4e-17 Score=184.10 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=67.9
Q ss_pred CCCCCHHHHH------HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEE
Q 002434 444 GLALTEEQKI------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAV 516 (922)
Q Consensus 444 G~~LSGGqkQ------RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~v 516 (922)
...||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. +++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 6788899999999999999999999999999999998864 47899999999887777999999
Q ss_pred Ee
Q 002434 517 MD 518 (922)
Q Consensus 517 l~ 518 (922)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 94
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=1.4e-18 Score=217.84 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=122.0
Q ss_pred ccEEEEe-----EEEEeCCCCCCCcccceeEEecC-------CCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe
Q 002434 307 GNIEFRN-----VYFSYLSRPEIPILSGFYLTVPA-------KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374 (922)
Q Consensus 307 g~i~~~~-----v~f~y~~~~~~~vL~~isl~i~~-------G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~ 374 (922)
+.|+++| |++.|++ +.++++|++|++++ |++++|+|||||||||+++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999942 35799999999987 999999999999999999999 98763
Q ss_pred CCCCCHHHHhhcce-EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHH
Q 002434 375 IKNLKLEWLRSQIG-LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (922)
Q Consensus 375 i~~~~~~~lr~~i~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQ 453 (922)
..++| ||||++. ..|+.|||.. + . ++.+.+. .|. ..+|+++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r-i------------g~~d~~~---~~~--------stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R-L------------GASDRIM---SGE--------STFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E-C------------C--------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H-c------------CCHHHHh---hch--------hhhHHHHHH
Confidence 34677 9999873 5677777632 1 1 1111111 122 345666664
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHc-C-CCeEEEEecCcchhhc-cCEEEEEeCCeEE--EecC
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAE-RAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLF--EMGT 527 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~-~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~D~i~vl~~G~i~--~~G~ 527 (922)
+++||+++.+|+++||||||+|+|+... ..+.+.++.+. + ++|+|++||+++.+.. +|++.++ +|++. +.|+
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~ 936 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENE 936 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC----
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecC
Confidence 9999999999999999999999999864 55677777764 3 7899999999998876 8999886 58887 5555
Q ss_pred HH
Q 002434 528 HD 529 (922)
Q Consensus 528 ~~ 529 (922)
.+
T Consensus 937 ~~ 938 (1022)
T 2o8b_B 937 CE 938 (1022)
T ss_dssp --
T ss_pred cc
Confidence 43
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=4.3e-20 Score=196.82 Aligned_cols=172 Identities=12% Similarity=0.132 Sum_probs=106.1
Q ss_pred CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccH
Q 002434 322 PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (922)
Q Consensus 322 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 401 (922)
++.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++.....|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 3567999999999999999999999999999999999976 655554 35778999999974335799
Q ss_pred HHHHhcCc---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCC
Q 002434 402 RDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478 (922)
Q Consensus 402 ~eNi~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD 478 (922)
.+|+.+.. ..++.+-. ....+.+.+..+.++.+..+ ..||+||+||+++ ++++.+|+++|||||....|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAF---DNDLMHRTLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGB---CHHHHHHHHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred hHhhhhhccCCCCCCcccc---cHHHHHHHHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99987532 11111100 00111122333334443333 5799999999988 78999999999999988877
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEecCc-chhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 479 FEAERAVQEALDLLMLGRSTIIIARRL-SLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 479 ~~~~~~i~~~l~~~~~~~t~i~itH~l-~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
.. + .++ .+.|++++||.. ...+. ++.+ ++|+ +.+++.
T Consensus 148 ~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 148 QE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp HH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred HH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 64 2 222 378999999974 33343 3334 6664 566665
No 96
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=4.9e-18 Score=207.84 Aligned_cols=151 Identities=19% Similarity=0.328 Sum_probs=115.8
Q ss_pred CCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc--CCCHHHH-------HHHHHHHHHHHhHHH
Q 002434 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQI-------EEAAKIAHAHTFISS 431 (922)
Q Consensus 361 ~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~--~~~~~~~-------~~~~~~~~l~~~i~~ 431 (922)
+.|....|.++|.+|. .+...||.|++.|.. ..+.++- .+..++. +++..
T Consensus 432 l~~~~l~v~~~g~~i~------------------q~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIG------------------EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHH------------------HHHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHH------------------HHhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 3556667778776542 244678888888864 2333211 1122221 22333
Q ss_pred hhccchhh-hcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcch
Q 002434 432 LEKGYETQ-VGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL 507 (922)
Q Consensus 432 l~~g~~t~-vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~ 507 (922)
+ |++.. ......+|||||||||+||+||..+| ++|||||||++||+.....+.+.|+++. .|.|+|+|+||+++
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 3 55433 45667899999999999999999985 9999999999999999999999998886 58999999999999
Q ss_pred hhccCEEEEE------eCCeEEEecCHHHHhhc
Q 002434 508 IRNADYIAVM------DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 508 ~~~~D~i~vl------~~G~i~~~G~~~eL~~~ 534 (922)
++.||+|++| ++|+|+++|+++++.+.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999998864
No 97
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.71 E-value=8.7e-20 Score=206.01 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=111.8
Q ss_pred cccceeEEecC--CCEEEEeCCCCCcHHHHHHHHhcCCCCCC----cEEEE----CCEeCCCCCHHHHhhcceEEecCCC
Q 002434 326 ILSGFYLTVPA--KKAVALVGRNGSGKSSIIPLMERFYDPTL----GEVLL----DGENIKNLKLEWLRSQIGLVTQEPA 395 (922)
Q Consensus 326 vL~~isl~i~~--G~~vaivG~sGsGKSTl~~ll~g~~~~~~----G~I~i----~g~~i~~~~~~~lr~~i~~v~Q~~~ 395 (922)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46555 4555556 56999999999
Q ss_pred CccccHHHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc-cCCCEEEEeC-
Q 002434 396 LLSLSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL-LNPSILLLDE- 472 (922)
Q Consensus 396 lf~~ti~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~-~~p~iliLDE- 472 (922)
+|.+|++|||.++.. ..+..... +|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~----------------------------~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFC----------------------------IQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHH----------------------------HHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHHH----------------------------HHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 999999999988752 11111111 2334456666666653 4677777777
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHcC--CCeEEEEecCcchhhccCEEEEEe
Q 002434 473 --VT------GGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 473 --pt------s~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
|+ +++|+..+..+.+.++++.+ +.++|+++|--..-+.+|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 43 46677777777766655433 566777765432333355555544
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.70 E-value=6.2e-18 Score=199.86 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=115.5
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh-cCc
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGR 409 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~-~~~ 409 (922)
+..+++|++++|+|+||||||||++.++|...|. |+ +.+.+++|++. .++++|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4489999999999999999999999999998875 53 02445666652 24444442 22
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH-----HHHH
Q 002434 410 DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE-----AERA 484 (922)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~-----~~~~ 484 (922)
.+.+++ . ..|+..........|||||+||+++||++..+|++||+| ||++||.. ....
T Consensus 333 -~~~~~~------------~---~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 333 -MDFEEM------------E---RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp -CCHHHH------------H---HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred -CCHHHH------------H---hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 121110 0 113333334455689999999999999999999999999 99999999 8888
Q ss_pred HHHHHHHHc-CCCeEEEEecCc----------chhhc-cCEEEEEeCCe
Q 002434 485 VQEALDLLM-LGRSTIIIARRL----------SLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 485 i~~~l~~~~-~~~t~i~itH~l----------~~~~~-~D~i~vl~~G~ 521 (922)
+.+.++.+. .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 888887764 588999999998 66655 99999999987
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.70 E-value=5.2e-20 Score=191.09 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=108.7
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc---ccHHHHHhcCc-
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS---LSIRDNIAYGR- 409 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~---~ti~eNi~~~~- 409 (922)
.++|++++|+||||||||||+++|.|++.| +++||+|++.+++ .|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998865 5899999999874 47878776532
Q ss_pred ---CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHH----HHHHHHHHhhccCCCEEEEeCCCCC------
Q 002434 410 ---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ----KIKLSIARAVLLNPSILLLDEVTGG------ 476 (922)
Q Consensus 410 ---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGq----kQRiaiARAl~~~p~iliLDEpts~------ 476 (922)
..+.+++.++++..++.+.+.. .+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2445667777766655443322 234456664 6899999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--cCCCeEEEEecCc
Q 002434 477 -LDFEAERAVQEALDLL--MLGRSTIIIARRL 505 (922)
Q Consensus 477 -LD~~~~~~i~~~l~~~--~~~~t~i~itH~l 505 (922)
||+..+..+.+.+++. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998888764 3588999999984
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=3e-17 Score=160.81 Aligned_cols=88 Identities=24% Similarity=0.231 Sum_probs=75.6
Q ss_pred cchhhh-----cCCCCCCCHHHHHHHHHH------HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 002434 435 GYETQV-----GRAGLALTEEQKIKLSIA------RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIA 502 (922)
Q Consensus 435 g~~t~v-----ge~G~~LSGGqkQRiaiA------RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 502 (922)
+|++.+ .....+||||||||++|| ||++++|++|||||||++||+.+...+.+.|+++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566654 345679999999999876 99999999999999999999999999999998874 478999999
Q ss_pred cCcchhhccCEEEEE--eCCeE
Q 002434 503 RRLSLIRNADYIAVM--DEGRL 522 (922)
Q Consensus 503 H~l~~~~~~D~i~vl--~~G~i 522 (922)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766679999999 56643
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.70 E-value=3.8e-18 Score=178.81 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=103.6
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-------CCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDP-------TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-------~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi 405 (922)
-|++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445788888642 11 2367788888888877999999
Q ss_pred hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh--ccCCCEEEEeCCCCCCCHH---
Q 002434 406 AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV--LLNPSILLLDEVTGGLDFE--- 480 (922)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl--~~~p~iliLDEpts~LD~~--- 480 (922)
.+....+..+..+..+. +.+.+ .+++ ..+|++++|||||+.+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~----------------------------~~~~~~~~~~~llilDe~~~~l~~~~~~ 144 (231)
T 4a74_A 95 YVARAFNSNHQMLLVQQ--AEDKI----------------------------KELLNTDRPVKLLIVDSLTSHFRSEYIG 144 (231)
T ss_dssp EEEECCSHHHHHHHHHH--HHHHH----------------------------HHHTTSSSCEEEEEEETSSHHHHHHSCS
T ss_pred EEEecCChHHHHHHHHH--HHHHH----------------------------HHhcccCCceeEEEECChHHHhccccCC
Confidence 88664433221111111 01111 1111 3589999999999999984
Q ss_pred ----HH-----HHHHHHHHHHc--CCCeEEEEecCcc----hhhc-cCEEEEEeCCe
Q 002434 481 ----AE-----RAVQEALDLLM--LGRSTIIIARRLS----LIRN-ADYIAVMDEGR 521 (922)
Q Consensus 481 ----~~-----~~i~~~l~~~~--~~~t~i~itH~l~----~~~~-~D~i~vl~~G~ 521 (922)
.+ ..+.+.|.++. .+.|+|+++|..+ .+.. ||++++|++|+
T Consensus 145 ~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 145 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 22 24555555542 3899999999544 4665 99999998753
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.70 E-value=1e-18 Score=195.81 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=119.1
Q ss_pred Ccccce-eEEecCCCEEEEeCCCCCcHHHHHHHHhcCC--CCCC----cE-EEECCEeCCCCCHHHHhhcceEEecCCCC
Q 002434 325 PILSGF-YLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTL----GE-VLLDGENIKNLKLEWLRSQIGLVTQEPAL 396 (922)
Q Consensus 325 ~vL~~i-sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~--~~~~----G~-I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l 396 (922)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 457776 6899999999999999999999999999998 6666 68 899997642 24678999999998
Q ss_pred ccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc-------cCCCEEE
Q 002434 397 LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL-------LNPSILL 469 (922)
Q Consensus 397 f~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~-------~~p~ili 469 (922)
+..++.+||.+....+ |++|+|++.++++++ .+|++||
T Consensus 192 ~~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8889999998765332 234666677777766 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHc--CCCeEEEEecCcchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 470 LDEVTGGLDFEA------------ERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 470 LDEpts~LD~~~------------~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
+||||+.+|+.. ...+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999862 133344444443 37899999998765432 3456677788888877766553
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.70 E-value=2e-17 Score=190.74 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCcchhhccCEEEEEe
Q 002434 446 ALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 446 ~LSGGqkQRiaiARAl~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
.||||||||++|||+++ ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988754 679999999988888899999986
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.70 E-value=5.3e-19 Score=211.91 Aligned_cols=190 Identities=16% Similarity=0.257 Sum_probs=124.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccce----------eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEEECCEeCC
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGF----------YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIK 376 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~i----------sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~i~g~~i~ 376 (922)
.++++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999531 23455544 366665 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHHhhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHH
Q 002434 377 NL---KLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (922)
Q Consensus 377 ~~---~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqk 452 (922)
.. ....+|+.|+|++|++.+++ .||++||.++. ... +..+..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~-----------------~~~~~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAI-----------------AGEGMGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHH-----------------HCSSSCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHh-----------------cCCccccc---h
Confidence 21 23467889999999999886 79999986421 110 00111222 3
Q ss_pred HHHHHHHhhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHc-C--CCeEEEEecCcchh--------hc-----
Q 002434 453 IKLSIARAVLLNPSILLLDEV------TGGLDFEAERAVQEALDLLM-L--GRSTIIIARRLSLI--------RN----- 510 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEp------ts~LD~~~~~~i~~~l~~~~-~--~~t~i~itH~l~~~--------~~----- 510 (922)
+++.++.+...+|+++|+||| |++||+..+..+.+.++++. + +.++++++|+++.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 566777777889999999999 99999999999999998853 2 45667788987632 22
Q ss_pred cCEEEEEeCCeEEEecCHHHHh
Q 002434 511 ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 511 ~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
...|+|+.++.+++.|+.+++.
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTCCC
T ss_pred CceEEEecchhhcCcccHHHHH
Confidence 3678999999999888865543
No 105
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.69 E-value=6.3e-17 Score=198.79 Aligned_cols=134 Identities=27% Similarity=0.379 Sum_probs=106.7
Q ss_pred CccccHHHHHhcCcC--CCHHH--H-----HHHHHHHHHHHhHHHhhccchhh-hcCCCCCCCHHHHHHHHHHHhhccC-
Q 002434 396 LLSLSIRDNIAYGRD--ATLDQ--I-----EEAAKIAHAHTFISSLEKGYETQ-VGRAGLALTEEQKIKLSIARAVLLN- 464 (922)
Q Consensus 396 lf~~ti~eNi~~~~~--~~~~~--~-----~~~~~~~~l~~~i~~l~~g~~t~-vge~G~~LSGGqkQRiaiARAl~~~- 464 (922)
++..||.|++.|..+ .+.++ + .+..++ + +++..+ |++.. ......+|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 567899999998653 33321 1 111111 1 223332 55433 4666789999999999999999998
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCcchhhccCEEEEE------eCCeEEEecCHHHHhhc
Q 002434 465 -PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM------DEGRLFEMGTHDELLAT 534 (922)
Q Consensus 465 -p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~D~i~vl------~~G~i~~~G~~~eL~~~ 534 (922)
|++|||||||++||+.....+.+.|+++. .|.|+|+|+||+++++.||+|++| ++|++++.|+++++.+.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 58999999999999999999999998875 589999999999999999999999 79999999999999875
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=8.6e-19 Score=186.13 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=109.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeE--EecCCCEEEEeCCCCCcHHHHHHHHh--cCCCCCCcEEEECCEeCCCCCHHHHh
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYL--TVPAKKAVALVGRNGSGKSSIIPLME--RFYDPTLGEVLLDGENIKNLKLEWLR 384 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl--~i~~G~~vaivG~sGsGKSTl~~ll~--g~~~~~~G~I~i~g~~i~~~~~~~lr 384 (922)
+++++++..|+ .|+++ + .|++|++++|+||||||||||+++|+ ++.++.+|.+.+++.+... .....+
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 45556665553 34443 2 78999999999999999999999999 7656778888887754321 122344
Q ss_pred hcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 002434 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (922)
Q Consensus 385 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~ 463 (922)
+.+++++|+...+. .++.++..........+..... ...+-++.++...+..-..
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHcCCChHHHhhcCCEEEEEccccccccccccceecc------------------------CcccHHHHHHHHHHHHHhh
Confidence 67888888754332 2333332221100000000000 0112233333333333357
Q ss_pred CCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHc-CCCeEEEEecCcchh----------hcc-CEEEEEeC
Q 002434 464 NPSILLLDEVTGGLD-----FEAERAVQEALDLLM-LGRSTIIIARRLSLI----------RNA-DYIAVMDE 519 (922)
Q Consensus 464 ~p~iliLDEpts~LD-----~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~----------~~~-D~i~vl~~ 519 (922)
+|++++|||||+++| +..++.+.+.++.+. .|+|+|++||.++.+ ..| |+|++|++
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999999997 566666888777664 489999999998876 347 99999974
No 107
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=2.6e-17 Score=203.89 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=120.5
Q ss_pred ccEEEEeEEEEeCCC--CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHH--------hcCCCCCCcEEEECCEeCC
Q 002434 307 GNIEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--------ERFYDPTLGEVLLDGENIK 376 (922)
Q Consensus 307 g~i~~~~v~f~y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll--------~g~~~~~~G~I~i~g~~i~ 376 (922)
+.|++++...-+-.. ++..+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888765443211 235789999999999999999999999999999999 56555544321
Q ss_pred CCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHH
Q 002434 377 NLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (922)
Q Consensus 377 ~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRia 456 (922)
++.+. .+|. .+| +.+. + ...+|+|++++..
T Consensus 702 ----------~~~~d---~i~~-------~ig----------------~~d~---l-----------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG----------------AGDS---Q-----------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC----------------chhh---H-----------HHhHhhhHHHHHH
Confidence 11100 0111 000 0000 0 1247888888888
Q ss_pred HHHhh--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHH
Q 002434 457 IARAV--LLNPSILLLDEVTGGLDFEAERAV-QEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531 (922)
Q Consensus 457 iARAl--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL 531 (922)
+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.+++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 88888 999999999999999999987777 55556554 38999999999888888999999999999998887665
No 108
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=5.5e-18 Score=206.40 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=119.3
Q ss_pred cccEEEEeEEEEeCCC--CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-CCCcEEEECCEeCCCCCHHH
Q 002434 306 HGNIEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-PTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-~~~G~I~i~g~~i~~~~~~~ 382 (922)
.+.|++++. ++|-- ++.++++|+||+ |++++|+|||||||||+++++.|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 456889887 34420 235799999999 99999999999999999999999874 67786521 1
Q ss_pred HhhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh
Q 002434 383 LRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (922)
Q Consensus 383 lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl 461 (922)
.+..+++++| +|. .++.||+..+ +|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHH
Confidence 2456888887 564 5777776432 588999999999999
Q ss_pred --ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 462 --LLNPSILLLDEV---TGGLDFEAE-RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 462 --~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
+.+|+++||||| |++||..+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++...
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999999 999999875 567888866 588999999998877655 223455555443
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=7e-17 Score=177.11 Aligned_cols=149 Identities=20% Similarity=0.201 Sum_probs=102.5
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH----HHH--hhcceEEecCCCCcc-ccHHHHHhcC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWL--RSQIGLVTQEPALLS-LSIRDNIAYG 408 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~----~~l--r~~i~~v~Q~~~lf~-~ti~eNi~~~ 408 (922)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..|+||+|++.+++ .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999876541 222 457999999998876 6889998653
Q ss_pred cCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCCCCHHHHHHHH
Q 002434 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGGLDFEAERAVQ 486 (922)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~LD~~~~~~i~ 486 (922)
. ..+.+..+-..+...+. ....++..++||.+||||+..+|+ +|.|| |+++. .+.
T Consensus 181 ~------------~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~ 237 (304)
T 1rj9_A 181 K------------ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGL 237 (304)
T ss_dssp H------------HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHH
T ss_pred H------------hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHH
Confidence 1 00110000001111100 111245667999999999999999 44455 44443 344
Q ss_pred HHHHHHc--CCCeEEEEecCcch
Q 002434 487 EALDLLM--LGRSTIIIARRLSL 507 (922)
Q Consensus 487 ~~l~~~~--~~~t~i~itH~l~~ 507 (922)
+.++.+. .+.|+|++||...+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 4443332 37899999997544
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=2.6e-18 Score=177.44 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=101.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC-----CCCCcEEEE-------CCEeCC
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY-----DPTLGEVLL-------DGENIK 376 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~-----~~~~G~I~i-------~g~~i~ 376 (922)
|+++|++|.|+ .++|++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 888898764 233222
Q ss_pred C---CC--------HHHHhhcceEEecCCCCccc-cHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchh-hhcCC
Q 002434 377 N---LK--------LEWLRSQIGLVTQEPALLSL-SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRA 443 (922)
Q Consensus 377 ~---~~--------~~~lr~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vge~ 443 (922)
+ .. .+.+++.++++.|+...+++ .+..++..+....++++.+. +.. .+... .++.+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---------~~~--~~~~~~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW---------AVD--SNIAVLVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHH---------HHH--TTCCEEEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHH---------HHH--cCCCeEEEEec
Confidence 1 11 12344455555554332221 22222222111111122221 111 12222 23556
Q ss_pred CCCCCHHHHHH-HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 002434 444 GLALTEEQKIK-LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493 (922)
Q Consensus 444 G~~LSGGqkQR-iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 493 (922)
-..+|+||||| +..+|+++++|+++++||||||+|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 66799999999 899999999999999999999999999999998887754
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=9.4e-18 Score=191.36 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=100.1
Q ss_pred ccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 307 g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+.|.++|++++|+ +..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 4589999999995 357999999998 99999999999999999999886665 2343332111 112356
Q ss_pred ceEEecCCCCc-cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 387 IGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 387 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+++++|++.++ ..||.||+.++...+.++.++. +.+++. .+ ++++++||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~---~~-----------~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYID---SK-----------FEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-----------CHH-----HHHHHH---HH-----------HHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHH---HH-----------HHHHHHHHHHHHHHhccCC
Confidence 89999998877 5899999988764322221111 112222 12 3345678999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchh
Q 002434 466 S---ILLLDEVT-GGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (922)
Q Consensus 466 ~---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 508 (922)
+ +|++|||| .+||+... +.++.+..+.++|+|.|+.+.+
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccCc
Confidence 9 99999999 69998764 2333444578899999987653
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.65 E-value=4.3e-17 Score=182.53 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=109.3
Q ss_pred EeEEEEeCCCCCCCcccceeE-------EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCC-CcEEEECCEeCCCCCHHHH
Q 002434 312 RNVYFSYLSRPEIPILSGFYL-------TVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-LGEVLLDGENIKNLKLEWL 383 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl-------~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~-~G~I~i~g~~i~~~~~~~l 383 (922)
.+++++|... ..+.|+++.+ ...+|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5778888643 4567888887 78899999999999999999999999999997 56665444332 222 2
Q ss_pred hhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 384 RSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 384 r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+...++++|.+.-.. .|..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~----------------------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSE----------------------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHH----------------------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccccCCHHH----------------------------------------------------HHHHHhh
Confidence 334567777543211 11111 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCC
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEG 520 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G 520 (922)
.+|++|++|||| |.++...+.++ ...|+|+++++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775554443 34689999999999999889999998654
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=1.2e-17 Score=183.30 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=79.2
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC-CCCCCcEEEECCEeCCCCCHHHHhhcceEE
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF-YDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~-~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 390 (922)
+|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 47888884 357999999988 99999999999999999998 889999 9888877653 11 1 3568999
Q ss_pred ecCCCCc-cccHHHHHhcCcCCCH-HHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 391 TQEPALL-SLSIRDNIAYGRDATL-DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 391 ~Q~~~lf-~~ti~eNi~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
+|++.++ ..|+.|+..++..... ++.....+. +.+. ++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987765 5788888877642211 111111111 1111 11122 248999999999999986 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHHcC--CCeEEEEecCcc
Q 002434 469 LLDEVTGG-LDFEAERAVQEALDLLML--GRSTIIIARRLS 506 (922)
Q Consensus 469 iLDEpts~-LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~ 506 (922)
++||||++ ||+... +.++++.+ +.++|+.+|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999874 34444433 445666668764
No 114
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.63 E-value=2.3e-18 Score=193.84 Aligned_cols=221 Identities=11% Similarity=0.003 Sum_probs=143.9
Q ss_pred HHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCC-CCCcccE
Q 002434 233 LWVGRFLVTH-NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYD-GNTL-PSVHGNI 309 (922)
Q Consensus 233 ~~~g~~lv~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~~~~-~~~~g~i 309 (922)
.+.|.+.+.. +.++.|.+..++.++.....+ .+......+..+..+..|+..++ ++...... .... ....+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3445555554 778888887765544332221 11111111122223445766666 22111100 0000 0112335
Q ss_pred ---------EEEeEEEE---eCCCCCCCcc---------cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE
Q 002434 310 ---------EFRNVYFS---YLSRPEIPIL---------SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (922)
Q Consensus 310 ---------~~~~v~f~---y~~~~~~~vL---------~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I 368 (922)
+|+||+|+ |++. +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 88999999 8531 23455 99999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhhcceEEe-cCCCC---ccccHHHHHhcCc-CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCC
Q 002434 369 LLDGENIKNLKLEWLRSQIGLVT-QEPAL---LSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443 (922)
Q Consensus 369 ~i~g~~i~~~~~~~lr~~i~~v~-Q~~~l---f~~ti~eNi~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~ 443 (922)
.++|. .++....+++.+++++ |++.+ +..|+++||..+. ...+..+...++.+.+.+++..+|.|++|.+++-
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~ 284 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSC 284 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 99985 4555555778899999 88876 7899999999875 2223222233334556778999999999999998
Q ss_pred CCCCCHHHHHHHHHHHh
Q 002434 444 GLALTEEQKIKLSIARA 460 (922)
Q Consensus 444 G~~LSGGqkQRiaiARA 460 (922)
+.+-..+..+|+.....
T Consensus 285 H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 285 HAGSCELTFERLALMVL 301 (361)
T ss_dssp ECSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 88888999999987764
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=1.2e-15 Score=153.48 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHhhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEE--
Q 002434 444 GLALTEEQKIKLSIARAVL----LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM-- 517 (922)
Q Consensus 444 G~~LSGGqkQRiaiARAl~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl-- 517 (922)
...||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+......||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988888999999999988899999855
Q ss_pred eCCeE
Q 002434 518 DEGRL 522 (922)
Q Consensus 518 ~~G~i 522 (922)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56754
No 116
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.60 E-value=9.4e-18 Score=182.92 Aligned_cols=128 Identities=10% Similarity=0.029 Sum_probs=95.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcC----C
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD----A 411 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~----~ 411 (922)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999999864 2 0 1 345666699999999999999987521 0
Q ss_pred CHHHHHHHHHHHHHHHhHHHhhccchhh------hcCCCCCCCHHHHHHHHHH--HhhccCCCEEEEeCCCCCCCHHH
Q 002434 412 TLDQIEEAAKIAHAHTFISSLEKGYETQ------VGRAGLALTEEQKIKLSIA--RAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 412 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~------vge~G~~LSGGqkQRiaiA--RAl~~~p~iliLDEpts~LD~~~ 481 (922)
......++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000112333456778899999998765 4567789999999999998 666 999999999999999864
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.59 E-value=5.4e-16 Score=162.32 Aligned_cols=166 Identities=14% Similarity=0.037 Sum_probs=114.0
Q ss_pred CCcccceeE-EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhh---cceEEecCCCCccc
Q 002434 324 IPILSGFYL-TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS---QIGLVTQEPALLSL 399 (922)
Q Consensus 324 ~~vL~~isl-~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~---~i~~v~Q~~~lf~~ 399 (922)
.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 467999988 8999999999999999999999999998888888887765433 2333322 34444443210
Q ss_pred cHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCC--EEEEeCCCCCC
Q 002434 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS--ILLLDEVTGGL 477 (922)
Q Consensus 400 ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~--iliLDEpts~L 477 (922)
+++..-..... . .+ + ..+- ...|.+|.++...+.+...+|+ ++++||||+.+
T Consensus 83 ---~~~~~~~~~~~-~-------~~--------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 83 ---KKLIIIDALMK-E-------KE--------D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp ---TTEEEEECCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred ---CCEEEEecccc-c-------cC--------c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 01111111100 0 00 0 0010 1348999988888887778999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHc--CCCeEEEEecCc--------chhhc-cCEEEEEeCCe
Q 002434 478 --DFEAERAVQEALDLLM--LGRSTIIIARRL--------SLIRN-ADYIAVMDEGR 521 (922)
Q Consensus 478 --D~~~~~~i~~~l~~~~--~~~t~i~itH~l--------~~~~~-~D~i~vl~~G~ 521 (922)
|+.....+.+.|+++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9988888888887763 478999999998 34554 99999998754
No 118
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=7.2e-16 Score=190.44 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=107.4
Q ss_pred ccEEEEeEEEEeC----CCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH
Q 002434 307 GNIEFRNVYFSYL----SRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (922)
Q Consensus 307 g~i~~~~v~f~y~----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~ 382 (922)
+.|.+++...-.- ..++..|++|+||++++|++++|+|||||||||+++++.+..-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 3577777543220 1124679999999999999999999999999999999864311
Q ss_pred HhhcceEEecCCC-------Ccc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHH
Q 002434 383 LRSQIGLVTQEPA-------LLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (922)
Q Consensus 383 lr~~i~~v~Q~~~-------lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQR 454 (922)
+.+.-.+||++.. +|. ..+.||+ ..+-..+|+|++|+
T Consensus 699 ~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l-----------------------------------~~~~stfs~em~~~ 743 (918)
T 3thx_B 699 MAQIGSYVPAEEATIGIVDGIFTRMGAADNI-----------------------------------YKGRSTFMEELTDT 743 (918)
T ss_dssp HHHHTCCBSSSEEEEECCSEEEEEC---------------------------------------------CCHHHHHHHH
T ss_pred HhhcCccccchhhhhhHHHHHHHhCChHHHH-----------------------------------HHhHHHhhHHHHHH
Confidence 0011123333211 111 1111111 11224689999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCcchhhccCEEEE-EeCCeE
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLM--LGRSTIIIARRLSLIRNADYIAV-MDEGRL 522 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~t~i~itH~l~~~~~~D~i~v-l~~G~i 522 (922)
..|+|+ +.+|+++||||||+|+|+.....+. ..++.+. .++|+|++||+++....||+.-- +.++++
T Consensus 744 ~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 744 AEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp HHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred HHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 999999 8999999999999999999888886 5566552 48999999999988776665421 344444
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.57 E-value=1.6e-16 Score=166.24 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=103.0
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC--CCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccH----HHH
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSI----RDN 404 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti----~eN 404 (922)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|. .++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35689999999999999999999999999986 78999998866543 23567999999998886 344 455
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHH
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~ 484 (922)
+.+.... |.| | +++ ++.++..++++||| ||+.+...
T Consensus 87 ~~~~~~~------------------------yg~---------~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------YGT---------S---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------EEE---------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------CCC---------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5442210 000 0 111 23334457999999 99999999
Q ss_pred HHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeCCeEEEecCHHHHhh
Q 002434 485 VQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533 (922)
Q Consensus 485 i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~G~~~eL~~ 533 (922)
+.+.+. ++.|+++++|+++.++. |+ +++| .|+.+++.+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 988775 57899999999998876 33 6677 577777654
No 120
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.55 E-value=9.6e-16 Score=187.80 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=111.0
Q ss_pred ccEEEEeEEEEeCCC----CCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEEECCEeCCCCCHH
Q 002434 307 GNIEFRNVYFSYLSR----PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVLLDGENIKNLKLE 381 (922)
Q Consensus 307 g~i~~~~v~f~y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~i~g~~i~~~~~~ 381 (922)
+.|.+++.. .|-- ++..+++|+||+ ++|++++|+|||||||||+++++.|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 347777653 2210 235789999999 99999999999999999999999986422 2221 1111
Q ss_pred HHhhcceEEecCCCCcc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 382 ~lr~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
-+..++++.| +|. .++.||+..+. ..+|+|+++ ++.+..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~-----------------------------------stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGR-----------------------------------STFMVEMTE-TANILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhh-----------------------------------hhhhHHHHH-HHHHHH
Confidence 1235666665 443 45666653221 134566654 444455
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCcchhhccCEEEEEeCCeEEEe
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAV-QEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~l~~~~~~D~i~vl~~G~i~~~ 525 (922)
.+.+|+++|||||++|+|+.....+ .+.++.+. .++|+|++||+.+....||++..+++|++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 6889999999999999998755554 56666654 37899999999988888998888889888654
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.6e-15 Score=172.17 Aligned_cols=179 Identities=12% Similarity=0.157 Sum_probs=115.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCE--EEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhc
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKA--VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~ 386 (922)
+++++ +++|+ +.+ |+++||++++|++ ++||||||||||||+++|+|+. ++|.++...++...++.
T Consensus 17 l~~~~-~~~y~---~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFD---SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred EEEee-EEEEC---Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 55666 77884 345 9999999999999 9999999999999999999983 45555544433444668
Q ss_pred ceEEecCCCCc-cccHHHHHhcCcCCCHHHHHHH-HHH--HHHHHhHHHh-------hccchhh-------hcCCCCCCC
Q 002434 387 IGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEA-AKI--AHAHTFISSL-------EKGYETQ-------VGRAGLALT 448 (922)
Q Consensus 387 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~-~~~--~~l~~~i~~l-------~~g~~t~-------vge~G~~LS 448 (922)
++|++|++.++ ..|+.||+.+|...+.+.-++. .+. ....+++... +..-|+. |-+.+..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999999887 5899999999875554321111 111 1122233322 1112222 123445677
Q ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEec
Q 002434 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL-LM-LGRSTIIIAR 503 (922)
Q Consensus 449 GGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH 503 (922)
-.+ +.++++|..+++|+++|+||..|.+.....+.+.|++ +. .|..++.++.
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 666 7999999999999999999999998877777777775 54 4667777775
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.51 E-value=1.3e-14 Score=150.74 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=96.1
Q ss_pred CCcccceeE-EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHH
Q 002434 324 IPILSGFYL-TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (922)
Q Consensus 324 ~~vL~~isl-~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 402 (922)
.+.|+++.. -+++|++++|+||+|||||||++.+++ .+..+.++++..+ ..+...+ +
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------V 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------H
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------H
Confidence 356777765 799999999999999999999999999 3333334444321 1112211 1
Q ss_pred HHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHH--HHHHHHHHHhhccC-CCEEEEeCCCCCCCH
Q 002434 403 DNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE--QKIKLSIARAVLLN-PSILLLDEVTGGLDF 479 (922)
Q Consensus 403 eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGG--qkQRiaiARAl~~~-p~iliLDEpts~LD~ 479 (922)
+.... ...+.++ ....+. + ..++++ |+|+++.+|+++++ |+++|+||||+.+|+
T Consensus 64 ~~~~~-~~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 64 QMAET-RGLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHHT-TTCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHHh-cCCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11110 0111111 111110 1 122333 47899999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHHHcC--CCeEEEEecCcc-------------hhh-ccCEEEEEeCC
Q 002434 480 EAE--------RAVQEALDLLML--GRSTIIIARRLS-------------LIR-NADYIAVMDEG 520 (922)
Q Consensus 480 ~~~--------~~i~~~l~~~~~--~~t~i~itH~l~-------------~~~-~~D~i~vl~~G 520 (922)
..+ ..+.+.|+++.+ +.|+|+++|... .+. .||+|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 334444655533 789999999765 344 49999999864
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.50 E-value=2.4e-14 Score=155.30 Aligned_cols=151 Identities=16% Similarity=0.123 Sum_probs=98.9
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh-cCcCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGRDA 411 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~-~~~~~ 411 (922)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|++.+... ..+.+++. ++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 57663 3543321 2357787766532 22222221 22233
Q ss_pred CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCC--CCCHHHH---HHHH
Q 002434 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG--GLDFEAE---RAVQ 486 (922)
Q Consensus 412 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts--~LD~~~~---~~i~ 486 (922)
...+..++++ .+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~---------~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVAD---------GL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHH---------HE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccC---------ce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 3332222222 11 233334556778999998865 68889999999999999 9998544 6667
Q ss_pred HHHHHHc--CCCeEEEEecCcchh
Q 002434 487 EALDLLM--LGRSTIIIARRLSLI 508 (922)
Q Consensus 487 ~~l~~~~--~~~t~i~itH~l~~~ 508 (922)
+.|+++. .++|+|+++|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777663 489999999987543
No 124
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.49 E-value=7.6e-17 Score=167.27 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=90.5
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCH
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATL 413 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~ 413 (922)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+.+.++.+..+|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~--- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR--- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc---
Confidence 4789999999999999999999999999875 4 25778888877777777666532110
Q ss_pred HHHHHHHHHHHHHHhHHHhhcc--chhhhcCCCCCCCHHHHHHHHHH-HhhccCCCEEEEeCCC
Q 002434 414 DQIEEAAKIAHAHTFISSLEKG--YETQVGRAGLALTEEQKIKLSIA-RAVLLNPSILLLDEVT 474 (922)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~l~~g--~~t~vge~G~~LSGGqkQRiaiA-RAl~~~p~iliLDEpt 474 (922)
..+..+.+...+.+++..++.| +++++.++|..+||||+||+++| |+++.++.++++|||.
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0011112233444566667766 77888999999999999999998 9999999999999984
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.49 E-value=6.6e-16 Score=170.89 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=108.9
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC--------CCCCcEEEECCEeCCCCC---------------HHHHhhcceEE---
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY--------DPTLGEVLLDGENIKNLK---------------LEWLRSQIGLV--- 390 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~--------~~~~G~I~i~g~~i~~~~---------------~~~lr~~i~~v--- 390 (922)
-++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 789999999999987763 34677889988
Q ss_pred ecCCCC-ccccHHHHHhcCcCCCHHHHHHHH-------HHHHHHHhHH--HhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 391 TQEPAL-LSLSIRDNIAYGRDATLDQIEEAA-------KIAHAHTFIS--SLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 391 ~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~-------~~~~l~~~i~--~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
+|++.+ |..++.||..++.. ..+.+.. ....+...+. .+.+..+.. .+|||||+||...+++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEE
T ss_pred HhcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEE
Confidence 788764 67899999987742 2221111 0000100000 000111111 1589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 461 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
++.+|+++ ||| ..+.+.++++.++.|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 99999977 998 67777787777889999999974
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.49 E-value=3.2e-16 Score=159.61 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=89.8
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDAT 412 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 412 (922)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++..... .++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999976532211 1334688888765 4568888875421
Q ss_pred HHHHHHHHHHHHHHHhHHHhh--ccchhh--hcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 002434 413 LDQIEEAAKIAHAHTFISSLE--KGYETQ--VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488 (922)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~l~--~g~~t~--vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~ 488 (922)
. ... ..+....++.+. .+++.. .+.....+|+||+||+++||++.++|+++ +|+...+.+.+.
T Consensus 77 --~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 77 --G--RYA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp --H--HHH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred --H--HHh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 0 000 000000000000 011111 13344579999999999999999999876 588766666655
Q ss_pred HHH
Q 002434 489 LDL 491 (922)
Q Consensus 489 l~~ 491 (922)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 543
No 127
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=1.4e-12 Score=156.15 Aligned_cols=184 Identities=18% Similarity=0.270 Sum_probs=155.2
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 002434 714 PSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQH 793 (922)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~ 793 (922)
..+++++.+.++.++.++.+++++++.+++.+...++++.+++........ .....|.++++++.++..++.+++.
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777888887777777788888888776543211 1233466777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (922)
Q Consensus 794 ~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~ 873 (922)
+.....+.+...++|.++|++++++|++||| ++++|++++|+++|++.++..++..+..++..++++++++++.+.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 874 WRLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 874 w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
|++++++++++|++++......+.......
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~ 206 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFY 206 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887776665554433
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=6.2e-14 Score=147.92 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=93.2
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhc--CCCC-----CCcEEEECCEeCCC-CCHHHHhhcceEEecCCCCccccHHHH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMER--FYDP-----TLGEVLLDGENIKN-LKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g--~~~~-----~~G~I~i~g~~i~~-~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 57889998865311 1123345567777664 5567
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc--cCCCEEEEeCCCCCCCHH--
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL--LNPSILLLDEVTGGLDFE-- 480 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~--~~p~iliLDEpts~LD~~-- 480 (922)
+.+....+.++..+.++. +++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLYQ-----------------------------------ASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHHHHH-----------------------------------HHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHHHHH-----------------------------------HHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 665544444333322211 11111 589999999999999985
Q ss_pred -----HH-----HHHHHHHHHHc--CCCeEEEEecCcchh-------------------h-ccCEEEEEeCC
Q 002434 481 -----AE-----RAVQEALDLLM--LGRSTIIIARRLSLI-------------------R-NADYIAVMDEG 520 (922)
Q Consensus 481 -----~~-----~~i~~~l~~~~--~~~t~i~itH~l~~~-------------------~-~~D~i~vl~~G 520 (922)
.+ ..+.+.+.++. .+.|+|+++|..... . .||.+++|++|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 22333344432 388999999965432 2 48999999875
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=7.2e-16 Score=171.81 Aligned_cols=176 Identities=11% Similarity=0.106 Sum_probs=116.7
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH----HHHhh
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRS 385 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~----~~lr~ 385 (922)
+++|+++.|. ...+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.|+..... ...|.
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445555663 2468999999999999999999999999999999999999999999999998854331 23567
Q ss_pred cceEEecCCCCccc-------------cHHHHHhc--------------CcCCCHHHHHHHHH-------------HHHH
Q 002434 386 QIGLVTQEPALLSL-------------SIRDNIAY--------------GRDATLDQIEEAAK-------------IAHA 425 (922)
Q Consensus 386 ~i~~v~Q~~~lf~~-------------ti~eNi~~--------------~~~~~~~~~~~~~~-------------~~~l 425 (922)
++++++|++.+|.. +++|.+.. |-..++..+.+.+. ...+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999998842 22333210 00001111110000 0001
Q ss_pred HHhHHHhhccch-hhhc-CCCCCCCHHHHHHHHHHHhhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002434 426 HTFISSLEKGYE-TQVG-RAGLALTEEQKIKLSIARAVLL------NPSILLLDEVTGGLDFEAERAVQEALDLL 492 (922)
Q Consensus 426 ~~~i~~l~~g~~-t~vg-e~G~~LSGGqkQRiaiARAl~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~ 492 (922)
...+...|.-+- +.+. .....+|+|++|++..|++++. +|+++. |||+|......+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 111112221100 1111 0123578999999999999997 688887 9999999999998888764
No 130
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.41 E-value=2.7e-12 Score=153.35 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=146.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 719 LAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGI 798 (922)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 798 (922)
++.+.++.+..+..+++++++.+++.+...++++.+++...... . ......+.+++++++++..++.+++.++..+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-D---FSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777777777777888888887764322 1 1222345556677788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 799 MGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLAL 878 (922)
Q Consensus 799 ~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~l~l 878 (922)
.+.+...++|.++|+++++.|.+||+ ++++|++++|+++|++.++..+...+..++..++++++++++.+.++|++++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 879 VALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 879 v~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
++++++|++++..+...+.......
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFR 192 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776665554433
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.40 E-value=2.4e-13 Score=156.25 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=103.3
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCC----HHH--HhhcceEEecCCCCc-cc
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEW--LRSQIGLVTQEPALL-SL 399 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~----~~~--lr~~i~~v~Q~~~lf-~~ 399 (922)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|+.... +.. .|++|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999888775431 122 477899999998876 47
Q ss_pred cHHHHHhcCc--CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcC--CCCCCCHHHHHHHHHHHhhcc-CC-CEEEEeCC
Q 002434 400 SIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGR--AGLALTEEQKIKLSIARAVLL-NP-SILLLDEV 473 (922)
Q Consensus 400 ti~eNi~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge--~G~~LSGGqkQRiaiARAl~~-~p-~iliLDEp 473 (922)
|+++||.++. .++ -.+ .||. |. +-.+|-.--+|++.++|++.. .| .+|+..+|
T Consensus 363 tV~e~l~~a~~~~~D--------------vVL------IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 363 VIFDAIQAAKARNID--------------VLI------ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp HHHHHHHHHHHTTCS--------------EEE------ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred HHHHHHHHHHhcCCC--------------EEE------EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 9999998753 110 000 0110 00 000111123588999998754 45 35655558
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 002434 474 TGGLDFEAERAVQEALDLLMLGRSTIIIAR 503 (922)
Q Consensus 474 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH 503 (922)
|.+.|.... .+.+.+ .-+.|.|++||
T Consensus 422 ttGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 422 STGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred cccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 887655422 112222 23789999999
No 132
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.40 E-value=2.3e-11 Score=145.45 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=143.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHH-HHHHHHHHHHHHHHHHHHH
Q 002434 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWC-LIIACMGVVTVVANFLQHF 794 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~i~~~~~~~ 794 (922)
+++++.+.++.+..+..+++++++.+++.+...++++.+++...... +. ....|. +.+++++++..++.+++.+
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA---ES--NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---ch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666677777666666777777776654321 11 112233 3356777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (922)
Q Consensus 795 ~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w 874 (922)
....++.+...++|.++|++++++|++||| ++++|.+++|+++|++.++..+...+..++..++++++++++.++++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002434 875 RLALVALATLPILSLSAIAQVCTVTMLSD 903 (922)
Q Consensus 875 ~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~ 903 (922)
++++++++++|++++......+.......
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 194 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISR 194 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766665544443
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.39 E-value=3e-16 Score=159.88 Aligned_cols=166 Identities=13% Similarity=0.043 Sum_probs=106.6
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHHHHHhcCcCCCHHH
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQ 415 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~ 415 (922)
|++++|+|||||||||++++|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999998655332 2467888866433 357777765310
Q ss_pred HHHHHHHHHHHHhHHHhhccchhhhcC----CCCCC--CHHHHHHHHHHH------hhccCCCEEEEeCCCCCCCHHHHH
Q 002434 416 IEEAAKIAHAHTFISSLEKGYETQVGR----AGLAL--TEEQKIKLSIAR------AVLLNPSILLLDEVTGGLDFEAER 483 (922)
Q Consensus 416 ~~~~~~~~~l~~~i~~l~~g~~t~vge----~G~~L--SGGqkQRiaiAR------Al~~~p~iliLDEpts~LD~~~~~ 483 (922)
..... .+. ..+ ++...+. .-..+ |+|++|++.++. +++++|+...+|+ ++|+....
T Consensus 67 -~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 67 -VNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp -HHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred -HHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 00000 000 000 0100000 00123 788888888888 8888888888884 79998776
Q ss_pred HHHHHHHHHc-CCCeEEEEecC-cchhhc-cCEEEEEeCCeEEEecCHHHHh
Q 002434 484 AVQEALDLLM-LGRSTIIIARR-LSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (922)
Q Consensus 484 ~i~~~l~~~~-~~~t~i~itH~-l~~~~~-~D~i~vl~~G~i~~~G~~~eL~ 532 (922)
. .+.++.+. .+.|+|..+|. ++.++. ||+|+ ++|+++..|+++.|-
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 6 67776664 35788888999 888876 99998 999999999987664
No 134
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.39 E-value=1.3e-11 Score=147.81 Aligned_cols=186 Identities=19% Similarity=0.313 Sum_probs=143.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 795 (922)
+++++.+.++.++.+..+++.+++.+++.+...++++.+++...... ..........+.++++++.++..++.+++.+.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNP-TVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCT-TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666676666543211 00111112334455667777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002434 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (922)
Q Consensus 796 ~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~w~ 875 (922)
...++.+...++|.++|++++++|++||| ++++|.+++|+++|++.++..+...+..++..++.+++++++.++++|+
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 876 LALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 876 l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
+++++++++|++++......+........
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 192 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKV 192 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777666655544433
No 135
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.38 E-value=6.8e-12 Score=149.79 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=147.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcch---hHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 002434 717 WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERH---HLREEVNKWCLIIACMGVVTVVANFLQH 793 (922)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~i~~~~~~ 793 (922)
++++.+.++.++.++.+++++++.+++.+...+.++.+++......... ........+.+++++++++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777777777787777665432110 0111112344455677777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (922)
Q Consensus 794 ~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~ 873 (922)
+...+++.+...++|.++|+++++.|++||| ++++|.+++|+++|++.++..+...+..++..++.+++++++.+.++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 79999999999999999999998888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 874 WRLALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 874 w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
|++++++++++|++++......+........
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 191 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887776665554433
No 136
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.37 E-value=2.7e-11 Score=144.76 Aligned_cols=183 Identities=17% Similarity=0.311 Sum_probs=143.7
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcchhHHHhHhHHH-HHHHHHHHHHHHHHHHHH
Q 002434 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWC-LIIACMGVVTVVANFLQH 793 (922)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~g~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~i~~~~~~ 793 (922)
.+++++.+.++.++.+..+++++++.+++.+...++++.+++...... .. ....|. +++++++++..++.+++.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT---DR--SVLLWMPLVVIGLMILRGITSYISS 86 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST---TH--HHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---ch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555565666666666677766666666666777666543211 11 112232 335677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002434 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (922)
Q Consensus 794 ~~~~~~~~~~s~~lr~~~f~~ilr~p~sfFD~~~n~~Gri~~rls~D~~~v~~~~~~~l~~~i~~~~~i~~~iiv~~~~~ 873 (922)
+....++.+...++|.++|++++++|++||| ++++|.+++|+++|++.++..+...+..++..++++++++++.+.++
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 164 (582)
T 3b60_A 87 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002434 874 WRLALVALATLPILSLSAIAQVCTVTMLSDA 904 (922)
Q Consensus 874 w~l~lv~l~~~Pi~~~~~~~~~~~~~~~~~~ 904 (922)
|++++++++++|++++......+........
T Consensus 165 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 195 (582)
T 3b60_A 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKN 195 (582)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888777666655544433
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.33 E-value=5.9e-14 Score=139.06 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=72.1
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEe
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 391 (922)
+|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566663 346899999999999999999999999999999999999 9999999999887521 1111 2899
Q ss_pred cCCCCccccHHHHHhc
Q 002434 392 QEPALLSLSIRDNIAY 407 (922)
Q Consensus 392 Q~~~lf~~ti~eNi~~ 407 (922)
|++.+|..|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999853
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.32 E-value=4.3e-14 Score=150.29 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=98.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHh---cCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHHhcC---
Q 002434 336 AKKAVALVGRNGSGKSSIIPLME---RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG--- 408 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~---g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~~~--- 408 (922)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999988876532 134456777788877665 6889998641
Q ss_pred ----------cCCCHHHHHHHHHHHHHHHhHHH--hh-c-cchhhhcCCCCCCCHHHHHHHHHHHhh-ccCCCEEEEe--
Q 002434 409 ----------RDATLDQIEEAAKIAHAHTFISS--LE-K-GYETQVGRAGLALTEEQKIKLSIARAV-LLNPSILLLD-- 471 (922)
Q Consensus 409 ----------~~~~~~~~~~~~~~~~l~~~i~~--l~-~-g~~t~vge~G~~LSGGqkQRiaiARAl-~~~p~iliLD-- 471 (922)
...+.++.....+..... .+.- .| + .++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 011221111111000000 0000 00 0 011122334457898 66 888 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHcC
Q 002434 472 --EVTGGLDFEAERAVQEALDLLML 494 (922)
Q Consensus 472 --Epts~LD~~~~~~i~~~l~~~~~ 494 (922)
|||+++|..++..+.+.++.+.+
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999888877643
No 139
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.32 E-value=1.5e-12 Score=144.10 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=98.1
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHH----HHhhcce--EEecCCCCcc-ccHHHHH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE----WLRSQIG--LVTQEPALLS-LSIRDNI 405 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~----~lr~~i~--~v~Q~~~lf~-~ti~eNi 405 (922)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .++++++ +++|+..+++ .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999876643 2344444 9999988885 7899999
Q ss_pred hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHH
Q 002434 406 AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485 (922)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i 485 (922)
.++.. .+. +.+ =.||. |... .-..=.++.-.++|++..++++++||.+|. .|..
T Consensus 205 ~~~~~------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~----- 258 (328)
T 3e70_C 205 QHAKA------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV----- 258 (328)
T ss_dssp HHHHH------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH-----
T ss_pred HHHHh------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH-----
Confidence 75420 000 000 01221 1100 000112344458999999999999996654 3332
Q ss_pred HHHHHHHc--CCCeEEEEecC
Q 002434 486 QEALDLLM--LGRSTIIIARR 504 (922)
Q Consensus 486 ~~~l~~~~--~~~t~i~itH~ 504 (922)
+.++.+. .+.|.|++||-
T Consensus 259 -~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 259 -EQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp -HHHHHHHHHSCCCEEEEECG
T ss_pred -HHHHHHHHhcCCCEEEEeCc
Confidence 2223322 47899999994
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.31 E-value=5.1e-15 Score=168.90 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=89.5
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC----CHHHHhhcceEEe---------c
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLRSQIGLVT---------Q 392 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~----~~~~lr~~i~~v~---------Q 392 (922)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999998776321 1223455666655 9
Q ss_pred CCCCc--c-----ccHHHHHhcCc---------CC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH
Q 002434 393 EPALL--S-----LSIRDNIAYGR---------DA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (922)
Q Consensus 393 ~~~lf--~-----~ti~eNi~~~~---------~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi 455 (922)
+|.++ . .|+.+|+.++. .. +..+..+.+...++..+. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99763 2 48899987632 11 112222333333332211 234799999999
Q ss_pred HHHHhhccCCCEEE
Q 002434 456 SIARAVLLNPSILL 469 (922)
Q Consensus 456 aiARAl~~~p~ili 469 (922)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.31 E-value=1.2e-12 Score=148.47 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=96.9
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHH--HhcCCCCCCc-----EEEECCEeC-CCCCHHHHhhcceEEecCCCCccccHHHH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPL--MERFYDPTLG-----EVLLDGENI-KNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~l--l~g~~~~~~G-----~I~i~g~~i-~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4577766444 889998763 22223344566777665 67788
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhh--ccCCCEEEEeCCCCCCCHHHH
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV--LLNPSILLLDEVTGGLDFEAE 482 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl--~~~p~iliLDEpts~LD~~~~ 482 (922)
+.+.+..+.++..+.++. ++++ -.+|+++++||||+.+|++..
T Consensus 247 i~~~~~~~~~~~~~~l~~-----------------------------------~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQLRLLDA-----------------------------------AAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHHHHHHHH-----------------------------------HHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHHHHHHHH-----------------------------------HHHHHHhcCCceEEecchhhhCchhhc
Confidence 877665444332222211 1111 147999999999999997532
Q ss_pred ------------HHHHHHHHHHc--CCCeEEEEecCcc-------------------hhhc-cCEEEEEeCCe
Q 002434 483 ------------RAVQEALDLLM--LGRSTIIIARRLS-------------------LIRN-ADYIAVMDEGR 521 (922)
Q Consensus 483 ------------~~i~~~l~~~~--~~~t~i~itH~l~-------------------~~~~-~D~i~vl~~G~ 521 (922)
..+.+.|+++. .+.|+|+|+|-.. .+.+ +|.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44556666553 3889999999722 2333 78888888763
No 142
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.30 E-value=3.5e-12 Score=143.99 Aligned_cols=74 Identities=27% Similarity=0.235 Sum_probs=67.7
Q ss_pred CCCCHHHHHHH------HHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEE
Q 002434 445 LALTEEQKIKL------SIARAVLLN-PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (922)
Q Consensus 445 ~~LSGGqkQRi------aiARAl~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl 517 (922)
..|||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999988 678999999 99999999999999999999999998876667999999999866679999999
Q ss_pred e
Q 002434 518 D 518 (922)
Q Consensus 518 ~ 518 (922)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.1e-12 Score=146.63 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=79.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc-CCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHHHHHhcCcCCCHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMER-FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQI 416 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g-~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~ 416 (922)
.+.|+||+|+||||++++|.| ++.|..|++.++|.+...... .+..+++++|.+++. +.+- .+ ......+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG-NNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC-CcchHHH
Confidence 499999999999999999999 899999999999987654332 367899999988753 2211 01 1111123
Q ss_pred HHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 002434 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR 496 (922)
Q Consensus 417 ~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 496 (922)
.+.++.... . .+++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+++..++.
T Consensus 110 ~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 333322210 0 1111111 4566 778999999999999 99999999999998877788
Q ss_pred eEEEEecCcch
Q 002434 497 STIIIARRLSL 507 (922)
Q Consensus 497 t~i~itH~l~~ 507 (922)
++|++||+++.
T Consensus 166 ~~Il~t~~~~~ 176 (354)
T 1sxj_E 166 RLIMVCDSMSP 176 (354)
T ss_dssp EEEEEESCSCS
T ss_pred EEEEEeCCHHH
Confidence 89999999754
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.28 E-value=1.5e-14 Score=169.25 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=117.2
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRD 403 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~e 403 (922)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +.+++++.|+.... ..|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222221 34577777776522 147777
Q ss_pred HHhcC----------cCCCHHHHHHHHHHHH-------------HHHhHHHhh---ccchhhhc-------CCCCCCCHH
Q 002434 404 NIAYG----------RDATLDQIEEAAKIAH-------------AHTFISSLE---KGYETQVG-------RAGLALTEE 450 (922)
Q Consensus 404 Ni~~~----------~~~~~~~~~~~~~~~~-------------l~~~i~~l~---~g~~t~vg-------e~G~~LSGG 450 (922)
++... .+....+...+++.+. ..+.+..+. .|....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76533 1234445555555543 122333332 23222221 223457999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEE--EecCcchhhc-cC
Q 002434 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTII--IARRLSLIRN-AD 512 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~--itH~l~~~~~-~D 512 (922)
||||.++|.+ | |++||+.+...+.+.+.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999887622 6 999999877766666655543 678774 7999988754 53
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.23 E-value=9e-12 Score=122.16 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=68.8
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc--EEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG--EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G--~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999887 47 555555332110
Q ss_pred HHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHH
Q 002434 404 NIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~ 483 (922)
+++.+|++|+||||++ +|...+.
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6655578
Q ss_pred HHHHHHHHHc-CCCe-EEEEecC
Q 002434 484 AVQEALDLLM-LGRS-TIIIARR 504 (922)
Q Consensus 484 ~i~~~l~~~~-~~~t-~i~itH~ 504 (922)
.+.+.+.... ++++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887654 4677 6666664
No 146
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.22 E-value=2.7e-12 Score=142.97 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=81.8
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-CCCcEEEEC-CEeCCCCCHHHHhhcceEEecCCCCcc-ccH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-PTLGEVLLD-GENIKNLKLEWLRSQIGLVTQEPALLS-LSI 401 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-~~~G~I~i~-g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti 401 (922)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+.++++++|++.++. .++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4799999999999999999999999999 999999987 76542 234567999999998885 689
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~ 462 (922)
+++-.. ..+.+++.+. ..+++..+ |+....+..-.+|| ||+||++||++++
T Consensus 279 ~e~~l~--~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW--HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC--CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc--CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 985322 3444443321 12222222 34334455567899 9999999999863
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=1.1e-11 Score=124.90 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=75.1
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcC
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD 410 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~ 410 (922)
++.+++|+.++|+||+|+|||||++++++.+.|.+|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 56778899999999999999999999999887666631 1111 11111
Q ss_pred CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 002434 411 ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG-GLDFEAERAVQEAL 489 (922)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts-~LD~~~~~~i~~~l 489 (922)
.+.+.. .+..+. . + -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 79 ------~~~~~~--------~~~~~~----------~-----~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 79 ------IFRLKH--------LMDEGK----------D-----T---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ------HHHHHH--------HHHHTC----------C-----S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ------HHHHHH--------HhcCch----------H-----H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 111110 011110 0 0 1112245999999999996 89999999998888
Q ss_pred HHHc-CCCeEEEEecCcc
Q 002434 490 DLLM-LGRSTIIIARRLS 506 (922)
Q Consensus 490 ~~~~-~~~t~i~itH~l~ 506 (922)
.... +++++|++||+..
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7764 6889999999853
No 148
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.17 E-value=3.8e-13 Score=148.06 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=99.2
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEe-------------------cCCCEEEEeCCCCCcHHHHHHHHhcCCC--CC
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTV-------------------PAKKAVALVGRNGSGKSSIIPLMERFYD--PT 364 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i-------------------~~G~~vaivG~sGsGKSTl~~ll~g~~~--~~ 364 (922)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999993 6899999998 9999999999999999999999999998 99
Q ss_pred CcEEEE---CCEeCCCCCHHHHhhcceEEecCCCCc-cccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhh
Q 002434 365 LGEVLL---DGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440 (922)
Q Consensus 365 ~G~I~i---~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 440 (922)
+|+|.+ ||.+.. ...++.++++ |+..++ ..|+.+|+.+.. .+..|.. .+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~---------------------~l~~~~~-~i 162 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS---------------------DLKSGVP-NV 162 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH---------------------HHTTTCS-CE
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH---------------------HHhCCCC-ce
Confidence 999999 987642 2346678999 876665 468888775421 1111111 00
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCH
Q 002434 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479 (922)
Q Consensus 441 ge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~ 479 (922)
--.-...+. .+|+..+.+.+.+++++|+|.|....|.
T Consensus 163 ~~P~~~~~~--~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 163 TAPVYSHLI--YDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EECCEETTT--TEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ecccccccc--cCcccccceecCCCCEEEECchhhCCCc
Confidence 000011111 1344444466778999999999988774
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.14 E-value=2.2e-13 Score=147.39 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=103.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCC-CCcc-ccHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEP-ALLS-LSIR 402 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~-~ti~ 402 (922)
.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++........++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999887 79999999887766666778899999986 3443 5667
Q ss_pred HHHhcCcCC-CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCC------
Q 002434 403 DNIAYGRDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG------ 475 (922)
Q Consensus 403 eNi~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts------ 475 (922)
|||...... ...+. .........++ ..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~------~~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET------GASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc------hHHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 777654311 11110 00111222222 247899999999999999999964 99864
Q ss_pred ------CCCHHHHHHHHHHH
Q 002434 476 ------GLDFEAERAVQEAL 489 (922)
Q Consensus 476 ------~LD~~~~~~i~~~l 489 (922)
--|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23666776666544
No 150
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.14 E-value=4.2e-12 Score=139.23 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=78.3
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEeCCCCCHHHHh-hcceEEecCCCCc------cccHH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL---DGENIKNLKLEWLR-SQIGLVTQEPALL------SLSIR 402 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i---~g~~i~~~~~~~lr-~~i~~v~Q~~~lf------~~ti~ 402 (922)
++.+|++++|+||||||||||+|+|. +.+|..|+|.+ +|.++..... ..+ +.+|||+|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988866432 222 3699999999653 4678
Q ss_pred HHH--hcC---------c-----CCCHHHHHHHHHHHHHHH-hHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 403 DNI--AYG---------R-----DATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 403 eNi--~~~---------~-----~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
||+ .|+ + ......+.++++..++.+ .....| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 112345677777766653 333333 248888888999998
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.09 E-value=1.5e-13 Score=144.61 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=56.6
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh-cCC------------CCCCcEEEECCEeCCCCCHHHHhhcceEEe
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME-RFY------------DPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-g~~------------~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 391 (922)
...+++||++++|++++|+||||||||||+++|. |++ +|..|++ +| +.|++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g--------------~~~~~ 78 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG--------------KDYYF 78 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT--------------TTBEE
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC--------------CeEEE
Confidence 4578999999999999999999999999999999 998 4444443 33 34555
Q ss_pred cCCCCcc-ccHHHHHh---------cCcCCCHHHHHHHHHHHHHHHhHHHh-hccchhhhcCCCCCCCHHHHHHH-HHHH
Q 002434 392 QEPALLS-LSIRDNIA---------YGRDATLDQIEEAAKIAHAHTFISSL-EKGYETQVGRAGLALTEEQKIKL-SIAR 459 (922)
Q Consensus 392 Q~~~lf~-~ti~eNi~---------~~~~~~~~~~~~~~~~~~l~~~i~~l-~~g~~t~vge~G~~LSGGqkQRi-aiAR 459 (922)
+++..|. .+..+|+. ++. ..+++.++++... ..+..+ +.|.. .-+++. .-++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~--~vild~~~~g~~------------~~~~~~~~~~~ 142 (231)
T 3lnc_A 79 VDREEFLRLCSNGEIIEHAEVFGNFYGV--PRKNLEDNVDKGV--STLLVIDWQGAF------------KFMEMMREHVV 142 (231)
T ss_dssp CCHHHHHHHHHTTCEEEEEEETTEEEEE--ECTTHHHHHHHTC--EEEEECCHHHHH------------HHHHHSGGGEE
T ss_pred ecHHHhhhhhhcCceehhhhhccccCCC--CHHHHHHHHHcCC--eEEEEcCHHHHH------------HHHHhcCCCeE
Confidence 5544432 22222222 221 1223333332210 000000 11111 114444 2233
Q ss_pred -hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002434 460 -AVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (922)
Q Consensus 460 -Al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 492 (922)
.++..|+..++||++++.|..++..+.+.|...
T Consensus 143 ~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 143 SIFIMPPSMEELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp EEEEECSCHHHHHHC--------------CHHHH
T ss_pred EEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346778888899999999988888887766543
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=4e-11 Score=131.46 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=70.4
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEeCCCCCHHHHhhcceEEecCCC-------------
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL---DGENIKNLKLEWLRSQIGLVTQEPA------------- 395 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~v~Q~~~------------- 395 (922)
|++.+|++++|+||||||||||+++|.|+.+|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998876542211246999999985
Q ss_pred ---Ccc-ccHHHHHhcCc----CCCHHHHHHHHHHHHH-HHhHHHhhcc
Q 002434 396 ---LLS-LSIRDNIAYGR----DATLDQIEEAAKIAHA-HTFISSLEKG 435 (922)
Q Consensus 396 ---lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~l-~~~i~~l~~g 435 (922)
+|+ .|+ +|+.|+. .....++.++++..++ .+.....|.-
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 353 678 9998853 2234568888888888 4556666643
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.03 E-value=8e-12 Score=130.54 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=103.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC---CCCCcEEEE--------CCEeCCC-CCHHHHhhcceEEecCC------CCcc
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY---DPTLGEVLL--------DGENIKN-LKLEWLRSQIGLVTQEP------ALLS 398 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~---~~~~G~I~i--------~g~~i~~-~~~~~lr~~i~~v~Q~~------~lf~ 398 (922)
+.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999877 788899887 7877653 45667889999999976 3455
Q ss_pred ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhh-cCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCC
Q 002434 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV-GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (922)
Q Consensus 399 ~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-ge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpt 474 (922)
.++.+++. ++++.+++..+..++.+.....+..+.+ .++|.-++|+ .++++++++++++|+.+++
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67777763 5678889999999999988877777766 3567788887 5777888999999998775
No 154
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.03 E-value=1.9e-11 Score=139.33 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=90.4
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~ 406 (922)
-++++|+++.|+.++|||+||||||||++.|++..+ .+.+.+...+. ..+++|.++.. ...++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999743 34444433332 35666666530 0111112111
Q ss_pred c------CcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHH
Q 002434 407 Y------GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480 (922)
Q Consensus 407 ~------~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~ 480 (922)
+ +...... ..+..+.+ +..+.. +|-. .+.-.+||+||+||+++||++..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era--~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIART--RVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSS--SEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHH--HhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 1 1111111 11111111 111111 1100 122246899999999999999999999999 899987
Q ss_pred HHHHHHHHHHHHc-CCCeEEEEec
Q 002434 481 AERAVQEALDLLM-LGRSTIIIAR 503 (922)
Q Consensus 481 ~~~~i~~~l~~~~-~~~t~i~itH 503 (922)
....+.+..+.+. .+.+++.||.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6533333333332 3567776664
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.96 E-value=3.9e-10 Score=115.58 Aligned_cols=72 Identities=8% Similarity=0.095 Sum_probs=56.4
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCcc-ccHHHHHh
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIA 406 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~eNi~ 406 (922)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|. .+..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 58888888776665555778999999998775 45555544
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.94 E-value=1.2e-09 Score=119.24 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=92.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4556666667421 1 678888 89999999999999999999999999999999999887764311100
Q ss_pred EEecCCCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEE
Q 002434 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (922)
Q Consensus 389 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~il 468 (922)
++....+..++ .-+|.+ ..-.-.+-+|.+|+++...+++++
T Consensus 144 --------------------------ql~~~~~~~~l----~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 --------------------------QLRLLGEKVGV----PVLEVM---------DGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp --------------------------HHHHHHHHHTC----CEEECC---------TTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred --------------------------HHHHhcccCCe----EEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEE
Confidence 00011111111 011111 112344567899999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHHcCC
Q 002434 469 LLDEV-TGGLDFEAERAVQEALDLLMLG 495 (922)
Q Consensus 469 iLDEp-ts~LD~~~~~~i~~~l~~~~~~ 495 (922)
|+||| ++++|......+.+..+....+
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~~~ 212 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPD 212 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCS
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcCCC
Confidence 99999 9999998777777766554333
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.92 E-value=3.2e-10 Score=124.15 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=77.1
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~ 409 (922)
+++..++|++++|+|++||||||++..|++.+.+..|+|.+.+.|.... + ..+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HHH------
Confidence 3455678999999999999999999999999999989999887764321 0 011
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH---HHHHhhccCCCEEEEeCCCCCCCHHHHHHHH
Q 002434 410 DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL---SIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486 (922)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi---aiARAl~~~p~iliLDEpts~LD~~~~~~i~ 486 (922)
++...++.. |++. + ..+|||+.|++ +|++|+.++|+++|+|||.. ......++
T Consensus 150 -----qL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 150 -----QLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp -----HHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred -----HHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 122222211 1111 1 24578999999 99999999999999999974 33344444
Q ss_pred HHHHH
Q 002434 487 EALDL 491 (922)
Q Consensus 487 ~~l~~ 491 (922)
+.+++
T Consensus 206 ~eL~~ 210 (306)
T 1vma_A 206 EELRK 210 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 158
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.92 E-value=1.6e-10 Score=123.37 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=78.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEeCC-CCCHHHHhhcceEEec
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME---RFYDPTLGEVL--------LDGENIK-NLKLEWLRSQIGLVTQ 392 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~---g~~~~~~G~I~--------i~g~~i~-~~~~~~lr~~i~~v~Q 392 (922)
.++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|.++. ......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3444443 789999999999999999999999 99999999999 9999984 5667889999999996
Q ss_pred C------CCCccccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhcc
Q 002434 393 E------PALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKG 435 (922)
Q Consensus 393 ~------~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g 435 (922)
+ ..++..++.+||. .+++..++.....+..+......
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~ 137 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR------TETVGNTASQAAAFPRVREALLR 137 (252)
T ss_dssp EETTEEEEEETTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHH
Confidence 5 3466678888764 35666666666666666655444
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.91 E-value=9.2e-10 Score=120.14 Aligned_cols=138 Identities=12% Similarity=0.197 Sum_probs=90.1
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHH
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLD 414 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 414 (922)
++|++++++|++||||||++..|++.+.+.+| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47899999999999999999999999988778 25667777763 3333443321
Q ss_pred HHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q 002434 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM- 493 (922)
Q Consensus 415 ~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~- 493 (922)
.++.. |..-... .+ ++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 156 ----~~~~~-----------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ----YAELL-----------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ----HHTTT-----------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ----HHHhc-----------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 11111 1111111 12 34457777765 899999999 99999877666555433322
Q ss_pred --CCCeEEEE--ecCcchhhc-cCEEEEEeCCeEEE
Q 002434 494 --LGRSTIII--ARRLSLIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 494 --~~~t~i~i--tH~l~~~~~-~D~i~vl~~G~i~~ 524 (922)
.+.+++++ +|....+.. +|++..++.|.++-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23455666 788776655 77766666677765
No 160
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.91 E-value=3.7e-10 Score=130.31 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=56.0
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~ 380 (922)
.+.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2479999999999 9999999999999999999999999999999999998876543
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=2.2e-10 Score=125.28 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=45.2
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEeCCCCCHHHHhhcceEEecCCCCcc-----ccHHH
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL---DGENIKNLKLEWLRSQIGLVTQEPALLS-----LSIRD 403 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~ti~e 403 (922)
+++.+|++++|+||||+|||||+|+|.|+..|..|+|.+ +|.++.... ..++..++||+|+|.++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888776533 222223899999997653 578 9
Q ss_pred HHh
Q 002434 404 NIA 406 (922)
Q Consensus 404 Ni~ 406 (922)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.82 E-value=1.4e-09 Score=110.35 Aligned_cols=127 Identities=20% Similarity=0.357 Sum_probs=59.1
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYD-------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+...++..+. ++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 778875 787776666666555432 344444444444
Q ss_pred HHhcCcCCCHHHHHHHHHH----------HHHHHhHHH--------------hhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 404 NIAYGRDATLDQIEEAAKI----------AHAHTFISS--------------LEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~----------~~l~~~i~~--------------l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
|+ ||. +.+++.++++. .++.. +.. -++-+...+-++|..-....+||++-|+
T Consensus 76 ~~-yg~--~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGS--TVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEE--EHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccC--cHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 43 332 12333333332 11111 111 0134555566677777777888998888
Q ss_pred hhc-----cCCCEEEEeC
Q 002434 460 AVL-----LNPSILLLDE 472 (922)
Q Consensus 460 Al~-----~~p~iliLDE 472 (922)
.-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 755 5667777664
No 163
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=2.5e-12 Score=145.13 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=107.2
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEeCCCCCH-HHHhhcc---eEEecCCCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMER------------FYDPTLGEVLLDGENIKNLKL-EWLRSQI---GLVTQEPAL 396 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g------------~~~~~~G~I~i~g~~i~~~~~-~~lr~~i---~~v~Q~~~l 396 (922)
++++|.+++|||++|+|||||++.|+| ..+|+.|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 678999999998843211100 0001122 366677766
Q ss_pred cc-ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCC--CEEEEeCC
Q 002434 397 LS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP--SILLLDEV 473 (922)
Q Consensus 397 f~-~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p--~iliLDEp 473 (922)
.. .|..|++ . .++...++.+.. +..+=+..+ ......++|+ .|| +++++|||
T Consensus 96 ~~~~s~~e~L------~-~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~------------~dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL------G-NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGD------------VDPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS------C-HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSS------------SCHHHHHHHHHHH
T ss_pred ccCCcHHHHH------H-HHHHHHHHHHHH---HHHHHhccc---cceeeeeccc------------cCcchhhhhchhh
Confidence 54 2333322 1 111111111110 000000000 1122223443 289 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-cC-CCeEEEEecCcchhhc-cCEEE-EEeCC-eEEEecCHH
Q 002434 474 TGGLDFEAERAVQEALDLL-ML-GRSTIIIARRLSLIRN-ADYIA-VMDEG-RLFEMGTHD 529 (922)
Q Consensus 474 ts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~l~~~~~-~D~i~-vl~~G-~i~~~G~~~ 529 (922)
+..+|++......+.++.. .+ ++|+ ++|.+..+.. ||+|. +|++| +++..|+.+
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999988888888776 54 4453 3999887765 99999 99999 888766643
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.78 E-value=1.9e-11 Score=132.25 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=92.9
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 246899999999999 99999999999999999999886 7999999987755544455667888
Q ss_pred EecCCC-Cc-cccHHHHHh-cCcCCC------HHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 390 VTQEPA-LL-SLSIRDNIA-YGRDAT------LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 390 v~Q~~~-lf-~~ti~eNi~-~~~~~~------~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
++|++. .+ ..++.|||. ++.... .++..+ .+..+. ..|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888864 33 356677773 332110 111111 112221 1368899999999999
Q ss_pred hccCCCE
Q 002434 461 VLLNPSI 467 (922)
Q Consensus 461 l~~~p~i 467 (922)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999975
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.74 E-value=2.2e-08 Score=111.74 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=86.0
Q ss_pred CcccceeE--EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-EECCEeCCCCCHHHHhhcceEEecCCCCccccH
Q 002434 325 PILSGFYL--TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401 (922)
Q Consensus 325 ~vL~~isl--~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 401 (922)
+-|+.+-= -+++|+.+.|.||+|||||||+..++.......|.+ +++... ..+. ...+++++.+|+..++.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~~--- 120 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVSQ--- 120 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEEC---
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEec---
Confidence 34554322 578999999999999999999877775444333433 344321 1111 11222333222211110
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccC--CCEEEEeCCCCCC--
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN--PSILLLDEVTGGL-- 477 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~--p~iliLDEpts~L-- 477 (922)
. .++ .|-+.++++++++ |+++|+||+++-+
T Consensus 121 --------~------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 121 --------P------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPR 154 (349)
T ss_dssp --------C------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCH
T ss_pred --------C------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcch
Confidence 0 011 2334567777655 9999999999998
Q ss_pred --------CH---HHHHHHHHHHHHH-----cCCCeEEEEecCcc----------------hhhc-cCEEEEEeCCeEEE
Q 002434 478 --------DF---EAERAVQEALDLL-----MLGRSTIIIARRLS----------------LIRN-ADYIAVMDEGRLFE 524 (922)
Q Consensus 478 --------D~---~~~~~i~~~l~~~-----~~~~t~i~itH~l~----------------~~~~-~D~i~vl~~G~i~~ 524 (922)
|+ ...+.+.+.++++ ..+.|+|+++|-.. .++. ||.++.++.+++..
T Consensus 155 ~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp HHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee
Confidence 32 1222344444433 23789999999542 1333 89888888877665
Q ss_pred ecC
Q 002434 525 MGT 527 (922)
Q Consensus 525 ~G~ 527 (922)
.|+
T Consensus 235 ~g~ 237 (349)
T 2zr9_A 235 DGT 237 (349)
T ss_dssp SSS
T ss_pred cCc
Confidence 443
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=5.5e-11 Score=132.29 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=96.0
Q ss_pred EeEEEEeCCCCCCCcccceeEEecCC-------CEEEEeCCCCCcHHHHHHHHhcCC----CCCCcEEEECCEeCCCCCH
Q 002434 312 RNVYFSYLSRPEIPILSGFYLTVPAK-------KAVALVGRNGSGKSSIIPLMERFY----DPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 312 ~~v~f~y~~~~~~~vL~~isl~i~~G-------~~vaivG~sGsGKSTl~~ll~g~~----~~~~G~I~i~g~~i~~~~~ 380 (922)
++++..|. ...+++++++.+++| +.++|+||+|+|||||+++|++.+ .+.+|.+..++.++..+..
T Consensus 22 ~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 34444453 246899999999877 899999999999999999999998 6778887777665533211
Q ss_pred HHHhhcceEEecCCCCccccHHHHHhcCc-CCC------HHHHHHHHHHHHHHHhHHHhhc-cchhhhcCCCCCCCHHHH
Q 002434 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR-DAT------LDQIEEAAKIAHAHTFISSLEK-GYETQVGRAGLALTEEQK 452 (922)
Q Consensus 381 ~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~-~~~------~~~~~~~~~~~~l~~~i~~l~~-g~~t~vge~G~~LSGGqk 452 (922)
...+..|.++.|...++. ++.|++.... ... ..+-. +.+ .. .+|. ++.. ...+...||+|+|
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~i--~~---~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KSI--RI---DIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---ccc--cc---cCCCeEEEE-ecCCcccCCHHHH
Confidence 112457999999877765 7888774321 110 00000 000 00 1111 2111 1223357999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 002434 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493 (922)
Q Consensus 453 QRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 493 (922)
||++++ .+||+.+...+.+.|++..
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 998655 5677777777777776553
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=3.4e-09 Score=111.52 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred CCcccce-eEEecCCCEEEEeCCCCCcHHHHHH-HHhcCCCCCCcEEEECCEeCCCCCHHHHh---hcceEEecCCCCcc
Q 002434 324 IPILSGF-YLTVPAKKAVALVGRNGSGKSSIIP-LMERFYDPTLGEVLLDGENIKNLKLEWLR---SQIGLVTQEPALLS 398 (922)
Q Consensus 324 ~~vL~~i-sl~i~~G~~vaivG~sGsGKSTl~~-ll~g~~~~~~G~I~i~g~~i~~~~~~~lr---~~i~~v~Q~~~lf~ 398 (922)
.+.|+++ .--+++|+.++|+||+|||||||+. ++.+..+...+.+++++.. +...++ .++++.+|+....
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~- 83 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK- 83 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH-
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC-
Confidence 3457776 6679999999999999999999954 4455544444555555432 223322 3455555432100
Q ss_pred ccHHHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc--cCCCEEEEeCCCCC
Q 002434 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL--LNPSILLLDEVTGG 476 (922)
Q Consensus 399 ~ti~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~--~~p~iliLDEpts~ 476 (922)
+|+.+.... .+.+ ..++. .+..+-+. +....+.+..++.++ .+|+++++|++++-
T Consensus 84 ----~~l~~~~~~-~~~~-------------~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 84 ----GMFAMVDAF-TAGI-------------GKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ----TSEEEEECS-TTTT-------------CC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ----CcEEEEecc-hhhc-------------ccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 011110000 0000 00000 00000000 011222233333333 47999999999988
Q ss_pred C--CHHHHHHHHHHHHHH--cCCCeEEEEecCcch---------hhccCEEEEEeC
Q 002434 477 L--DFEAERAVQEALDLL--MLGRSTIIIARRLSL---------IRNADYIAVMDE 519 (922)
Q Consensus 477 L--D~~~~~~i~~~l~~~--~~~~t~i~itH~l~~---------~~~~D~i~vl~~ 519 (922)
+ |+.....+...+.+. ..+.|+|+++|.... ...||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 553333443444333 247899999997654 244899999975
No 168
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.70 E-value=8e-10 Score=128.42 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=93.9
Q ss_pred ceeEEecCCCEEEEeCCCCCcHHHHHHHHhc--CCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHh
Q 002434 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMER--FYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406 (922)
Q Consensus 329 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~g--~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~ 406 (922)
.+++++.+|..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 4788899999999999999999999999876 67777799988888877654433321 123221 1111110
Q ss_pred cCc---CCCHHHHHH---HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHH----------HHHHhhccCCC-EEE
Q 002434 407 YGR---DATLDQIEE---AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL----------SIARAVLLNPS-ILL 469 (922)
Q Consensus 407 ~~~---~~~~~~~~~---~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRi----------aiARAl~~~p~-ili 469 (922)
.+. ....+|+++ .++..++.+ + .+|+..+. ..+||||+||. ++|+++...|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~-i----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRN-L----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSS-H----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcc-H----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 000 000111111 111111110 0 01221111 13677777652 46888888998 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH----c-CCCeEEEEecCcc
Q 002434 470 LDEVTGGLDFEAERAVQEALDLL----M-LGRSTIIIARRLS 506 (922)
Q Consensus 470 LDEpts~LD~~~~~~i~~~l~~~----~-~~~t~i~itH~l~ 506 (922)
+||+++.+|... ..+.+.+.++ + .|.++|++|||++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999888432 3344444333 2 2779999999987
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=6.1e-10 Score=116.62 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=51.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH-------
Q 002434 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL------- 380 (922)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~------- 380 (922)
.|+++|+...|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888866552 1 566666 8999999999999999999999999999999999998844332
Q ss_pred -HHHhhcceEEecC
Q 002434 381 -EWLRSQIGLVTQE 393 (922)
Q Consensus 381 -~~lr~~i~~v~Q~ 393 (922)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2246789999984
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=1.9e-09 Score=109.54 Aligned_cols=141 Identities=19% Similarity=0.173 Sum_probs=75.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEeCCC--CCHHHHhhcceEEecCCCCcc--ccHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDP-----------TLGEVLLDGENIKN--LKLEWLRSQIGLVTQEPALLS--LSIRD 403 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~-----------~~G~I~i~g~~i~~--~~~~~lr~~i~~v~Q~~~lf~--~ti~e 403 (922)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57899999976531 111111222333333110000 01111
Q ss_pred HHhcCcCCCHHHHHHHHHHHHHHHhHHHh-hccc-hhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHH
Q 002434 404 NIAYGRDATLDQIEEAAKIAHAHTFISSL-EKGY-ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l-~~g~-~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~ 481 (922)
+ .+.....+.... ...+... +... --.++.+ ..|..-..+...+||++..+|+++++| |||+|...
T Consensus 111 ~------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 I------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp T------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred C------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 0 011111110000 0001100 0000 0001111 111111123477899999999999999 99999998
Q ss_pred HHHHHHHHHH
Q 002434 482 ERAVQEALDL 491 (922)
Q Consensus 482 ~~~i~~~l~~ 491 (922)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=4e-08 Score=113.73 Aligned_cols=178 Identities=11% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EEEECCEeCCCCCHHHHhhcc-eEEecCCCCccccH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGENIKNLKLEWLRSQI-GLVTQEPALLSLSI 401 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I~i~g~~i~~~~~~~lr~~i-~~v~Q~~~lf~~ti 401 (922)
-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +.... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~------~~- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGN------IN- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHT------CC-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcC------CC-
Confidence 3568888888999999999999999999999999887665445 5555432 34445544432 10000 00
Q ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhc--cCCCEEEEeCCCCCCCH
Q 002434 402 RDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL--LNPSILLLDEVTGGLDF 479 (922)
Q Consensus 402 ~eNi~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~--~~p~iliLDEpts~LD~ 479 (922)
.+.+.-| ..+++++..+.+..+ .+...|- .+. ....+|++|.+ +.+|++. .+|+++++|+++.-.+.
T Consensus 260 ~~~l~~g-~l~~~~~~~~~~a~~---~l~~~~l----~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 260 AQNLRTG-KLTPEDWGKLTMAMG---SLSNAGI----YID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHTS-CCCHHHHHHHHHHHH---HHHSSCE----EEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHH---HHhcCCE----EEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1122222 345555444433322 1222121 111 22478999876 5667766 58999999999987743
Q ss_pred H--------HHHHHHHHHHHHc--CCCeEEEEec---------C--cc--------hhh-ccCEEEEEeCCeE
Q 002434 480 E--------AERAVQEALDLLM--LGRSTIIIAR---------R--LS--------LIR-NADYIAVMDEGRL 522 (922)
Q Consensus 480 ~--------~~~~i~~~l~~~~--~~~t~i~itH---------~--l~--------~~~-~~D~i~vl~~G~i 522 (922)
. ....+.+.|+.+. .+.++|+++| . +. .+. .||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 2234455565553 3789999999 1 32 344 4999999987654
No 172
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.64 E-value=2.4e-09 Score=109.51 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=66.6
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf 397 (922)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34445899999999999999999999999886 77888 799999999999998876 6888999
Q ss_pred cccHHHHHhcCcCCCHHHHHHHHH
Q 002434 398 SLSIRDNIAYGRDATLDQIEEAAK 421 (922)
Q Consensus 398 ~~ti~eNi~~~~~~~~~~~~~~~~ 421 (922)
.+++.+| .||. +.+.+.++++
T Consensus 88 ~~~~~~n-~YGt--~~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGT--KFETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEE--EHHHHHHHHH
T ss_pred hhhhhce-eccc--chhhHHHHHh
Confidence 9999999 4774 3344554443
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.61 E-value=1.1e-09 Score=131.30 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=100.8
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC-cEEEECCEeCCCCCHHHHhhcceEEecCC--------
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLLDGENIKNLKLEWLRSQIGLVTQEP-------- 394 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~-G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-------- 394 (922)
..+++++++.+++|+.+.|+||+|+|||||+++|.+++++.. |.+.+++.+..... ..++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 88888887665433 3688887753
Q ss_pred --------------CCc-cccHHHHHhcCcC-CCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHH
Q 002434 395 --------------ALL-SLSIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (922)
Q Consensus 395 --------------~lf-~~ti~eNi~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiA 458 (922)
+.| ..++.+|+..++. .....+... . ......|-..++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~----~~~~~~L~G~~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T----GAHAGALLGDVRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T----TCCHHHHHCEECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C----CCCHHhcCceEEec-hhhcCCccccccccccCc
Confidence 112 1233333332210 000000000 0 00000111111110 012235899999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002434 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491 (922)
Q Consensus 459 RAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 491 (922)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 799888888888864
No 174
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.61 E-value=2e-10 Score=122.38 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=95.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcce
Q 002434 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (922)
Q Consensus 309 i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 388 (922)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|++... .|.|.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 44566666663 236899999999999 99999999999999999999886 799999998775544445566788
Q ss_pred EEecCCC-Cc-cccHHHHH-hcCcCC------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHH
Q 002434 389 LVTQEPA-LL-SLSIRDNI-AYGRDA------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (922)
Q Consensus 389 ~v~Q~~~-lf-~~ti~eNi-~~~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiAR 459 (922)
+++|+.. .+ ..++.||| .++... ..++..+. +..+.. .|||||+||..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~ll~-----------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLLV-----------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHHHHH-----------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHHHHH-----------HHhCCCCCCCEEEE
Confidence 8888764 33 34666777 343211 01111111 112211 35688999999999
Q ss_pred hhccCCCEEEEeCCC
Q 002434 460 AVLLNPSILLLDEVT 474 (922)
Q Consensus 460 Al~~~p~iliLDEpt 474 (922)
|+..+|++ ||++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999986 56554
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.61 E-value=1.2e-08 Score=123.35 Aligned_cols=132 Identities=21% Similarity=0.232 Sum_probs=96.1
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC--CCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhc-
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY- 407 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~- 407 (922)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987665 67998 88999999999999999999999998888777777642
Q ss_pred -CcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH
Q 002434 408 -GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486 (922)
Q Consensus 408 -~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~ 486 (922)
|...-..++..+ .| ..+..++++| |+.++|++++..+.
T Consensus 82 pG~~~f~~~~~~~--------------------------------------l~--~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGA--------------------------------------LE--AADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHH--------------------------------------HH--HCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHH--------------------------------------Hh--hcCcEEEEEc-CCcccchhHHHHHH
Confidence 221000111111 11 2366788888 99999998886554
Q ss_pred HHHHHHcCCCeEEEEecCcch
Q 002434 487 EALDLLMLGRSTIIIARRLSL 507 (922)
Q Consensus 487 ~~l~~~~~~~t~i~itH~l~~ 507 (922)
.+.. .+.++|++.|+++.
T Consensus 121 ~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHH---TTCCEEEEEECGGG
T ss_pred HHHH---ccCCEEEEecCCch
Confidence 4322 46778888888764
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.51 E-value=1.4e-09 Score=122.35 Aligned_cols=136 Identities=12% Similarity=0.165 Sum_probs=86.9
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
.+|+++++.+++|+.++|+||+|||||||+++|.|.+ +|++...+ .. .+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999864 68776511 11 122333588888887543 222
Q ss_pred HhcCcC----CCH-HHHHHHHHHHHHHHhHHHh-hccchh-------------hhcCCCCCCCHHHHHHHHHHHhhccCC
Q 002434 405 IAYGRD----ATL-DQIEEAAKIAHAHTFISSL-EKGYET-------------QVGRAGLALTEEQKIKLSIARAVLLNP 465 (922)
Q Consensus 405 i~~~~~----~~~-~~~~~~~~~~~l~~~i~~l-~~g~~t-------------~vge~G~~LSGGqkQRiaiARAl~~~p 465 (922)
+..... ... +.+. ....+.+.+... +-..+| .+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 322111 000 0110 111122222100 000111 234455678999999999999999999
Q ss_pred CEEE-EeCCCC
Q 002434 466 SILL-LDEVTG 475 (922)
Q Consensus 466 ~ili-LDEpts 475 (922)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999987
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=1.1e-08 Score=103.15 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVL----------LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~----------i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
.+|++++|+||||||||||+++|.+++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998874 445543 36666666777777664 46777888888888
Q ss_pred HHhcCc
Q 002434 404 NIAYGR 409 (922)
Q Consensus 404 Ni~~~~ 409 (922)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 4553
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=6e-08 Score=98.83 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002434 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491 (922)
Q Consensus 455 iaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 491 (922)
...||++.++|+++++| |||+|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888777654
No 179
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.41 E-value=6.2e-08 Score=99.58 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=63.8
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCc
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~ 409 (922)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334678899999999999999999999999875 37899999988875 5665543
Q ss_pred -CCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCC
Q 002434 410 -DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (922)
Q Consensus 410 -~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpt 474 (922)
...+.++.++++...+.+++..+..+... ..++.|.++ ..+++++|+|=|.
T Consensus 68 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~~ 119 (207)
T 2qt1_A 68 NGFLQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGFL 119 (207)
T ss_dssp TSCBCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECTT
T ss_pred cCCChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeehH
Confidence 12211222333334444444443222110 123444443 3567788888654
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.31 E-value=7.2e-07 Score=103.22 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=73.6
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
..++++++.+++| +.|+||+|+|||||++++.+.... .+-++ +..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHHHH
Confidence 3577788888877 889999999999999999984310 01111 00000
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCC----------C
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV----------T 474 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEp----------t 474 (922)
+. . .+| .|++++|-.+++|....|.||++||+ +
T Consensus 86 ~~----------------------------~---~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VE----------------------------L---FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TT----------------------------C---CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HH----------------------------H---Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00 0 011 15788899999999999999999999 3
Q ss_pred CCCCHHHHHHHHHHHHHHc-----CCCeEEEEecCcchh
Q 002434 475 GGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLI 508 (922)
Q Consensus 475 s~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 508 (922)
++.|...++.+.+.+..+. .+..+|..||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4667666666666655442 345677788987544
No 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.28 E-value=1.5e-07 Score=105.55 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=83.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC-----------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCC----ccccHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYD-----------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL----LSLSIRD 403 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~-----------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l----f~~ti~e 403 (922)
.++|+|++|+|||||++.|+|... |..|.|.++|.++. +....|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999765 67799999997653 22356666664431 22222 2
Q ss_pred HHhcC------cCCCHHH--HHHHHHHHHHHHhHHHh--hccchhhhcCCCCCCCHHHHHHHHHH----Hhh-ccCCCEE
Q 002434 404 NIAYG------RDATLDQ--IEEAAKIAHAHTFISSL--EKGYETQVGRAGLALTEEQKIKLSIA----RAV-LLNPSIL 468 (922)
Q Consensus 404 Ni~~~------~~~~~~~--~~~~~~~~~l~~~i~~l--~~g~~t~vge~G~~LSGGqkQRiaiA----RAl-~~~p~il 468 (922)
.+.-. -+.++.. ..+..+. ..+.+..+ ++----.|+.+--.+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22211 1222211 2211111 11222222 11111123444455788888988877 666 445554
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Q 002434 469 LLDEVTGGLDFEAERAVQEALDLL 492 (922)
Q Consensus 469 iLDEpts~LD~~~~~~i~~~l~~~ 492 (922)
+|+||+|......+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888877654
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.27 E-value=3.1e-08 Score=101.45 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=46.6
Q ss_pred CCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE--EECCEeCC
Q 002434 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV--LLDGENIK 376 (922)
Q Consensus 323 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I--~i~g~~i~ 376 (922)
...+.+..++..++|++++|+|||||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4567888999999999999999999999999999999987 67988 89986543
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.27 E-value=1.2e-07 Score=97.01 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=43.3
Q ss_pred eEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC
Q 002434 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395 (922)
Q Consensus 331 sl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 395 (922)
.++.++|++++|+|+|||||||++++|.+.+ |.+.++|.++.... ...+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcc
Confidence 3667899999999999999999999999977 89999997765321 122235688888643
No 184
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.26 E-value=1e-07 Score=101.33 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=35.9
Q ss_pred cEEEEeE-EEEeCCCCCCCcccceeEEecC---CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 308 NIEFRNV-YFSYLSRPEIPILSGFYLTVPA---KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 308 ~i~~~~v-~f~y~~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++++|+ +|+|. .+.++|+|+||+|++ |+.++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4899999 99993 245799999999999 9999999999999999999998854
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.24 E-value=3.2e-07 Score=93.70 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=40.6
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCC
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 395 (922)
++|++|++++|+|||||||||++++|.+++.|+.| +.+ +....... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 222 22222211 111234788888754
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=3.7e-08 Score=114.61 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=96.2
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceE
Q 002434 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (922)
Q Consensus 310 ~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 389 (922)
+++++...|. +..+++++++++++| +.|+||+|+|||||+++|.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444453 235789999999999 99999999999999999999875 7899999988876554555667778
Q ss_pred EecCCC-Ccc-ccHHHHHh-cCcCC------CHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHh
Q 002434 390 VTQEPA-LLS-LSIRDNIA-YGRDA------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (922)
Q Consensus 390 v~Q~~~-lf~-~ti~eNi~-~~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARA 460 (922)
++|+.. ..+ -.+.|+|. ++... ..++..+.+ ...+. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888764 233 35567773 43311 122222221 11222 256778899999999
Q ss_pred hccCCCEEEEeCCCCC
Q 002434 461 VLLNPSILLLDEVTGG 476 (922)
Q Consensus 461 l~~~p~iliLDEpts~ 476 (922)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9999987 8998753
No 187
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.20 E-value=3.1e-07 Score=101.22 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=56.2
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH----HHH-----hhcceEE-ecCCC
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWL-----RSQIGLV-TQEPA 395 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~----~~l-----r~~i~~v-~Q~~~ 395 (922)
++++||++++|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 467888899999999999999999999999999999999999998888765431 233 5668888 66543
No 188
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.18 E-value=6.6e-08 Score=113.91 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=49.5
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EE-EECCEeCCC-------CCH---HHHhhcceEEecC
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EV-LLDGENIKN-------LKL---EWLRSQIGLVTQE 393 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I-~i~g~~i~~-------~~~---~~lr~~i~~v~Q~ 393 (922)
..+++|++++|+|+||||||||+++|.+.+.|++| +| ++||.++.. ++. ...++++++|+|+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999987 78 499977632 222 2244568888886
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=8e-07 Score=90.77 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=24.8
Q ss_pred EeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 317 SYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 317 ~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+|++++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666778999999999999999999999999999999998765
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.11 E-value=4.5e-07 Score=101.63 Aligned_cols=46 Identities=30% Similarity=0.409 Sum_probs=36.1
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc--CCCCCCcEEEECCE
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER--FYDPTLGEVLLDGE 373 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g--~~~~~~G~I~i~g~ 373 (922)
.+|++++++++ .++|||++|||||||++.|.| ++++.+|.++-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 57999999998 999999999999999999999 77888887754443
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.09 E-value=1.1e-05 Score=89.80 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=49.1
Q ss_pred CcccceeE--EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-EECCEeCCCCCHHHHhhcceEEecCCCC
Q 002434 325 PILSGFYL--TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-LLDGENIKNLKLEWLRSQIGLVTQEPAL 396 (922)
Q Consensus 325 ~vL~~isl--~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~l 396 (922)
+.|+.+-= -+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+..+ ..+.+++++.+|+..+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhh
Confidence 34554422 478999999999999999999999999888777865 666643322 2245567777665443
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.08 E-value=1.3e-07 Score=103.81 Aligned_cols=123 Identities=12% Similarity=0.163 Sum_probs=70.8
Q ss_pred CcccceeEEecCCC------EEEEeCCCCCcHHHHHHHHhcCCC--CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCC
Q 002434 325 PILSGFYLTVPAKK------AVALVGRNGSGKSSIIPLMERFYD--PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL 396 (922)
Q Consensus 325 ~vL~~isl~i~~G~------~vaivG~sGsGKSTl~~ll~g~~~--~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l 396 (922)
..|++++..+.+++ ++||+|||||||||++++|.+++. |.+|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 46777777777766 899999999999999999999987 44554 3444554444
Q ss_pred ccccHHHHHh----cCc--CCCHHHHHHHHHHHHHHHhHHHhhccch-hhhcCCCCCCCHHHHHHHHHHHhhccCCCEEE
Q 002434 397 LSLSIRDNIA----YGR--DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469 (922)
Q Consensus 397 f~~ti~eNi~----~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vge~G~~LSGGqkQRiaiARAl~~~p~ili 469 (922)
.+....+... +|. ..+.+.+. +.+..+..|-+ ..+- ..|-+..+|+.-+...+..|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~---------~~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLL---------RVLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHH---------HHHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHH---------HHHHhhhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 3322222211 111 22333332 33444444431 1000 112222344443455678999999
Q ss_pred EeCCCCCCCH
Q 002434 470 LDEVTGGLDF 479 (922)
Q Consensus 470 LDEpts~LD~ 479 (922)
+|.+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9998875543
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=1.2e-06 Score=89.81 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=70.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHHhcCcCCCHHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEE 418 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 418 (922)
+++|+|++||||||+.+.|.++ |...+|+ +.+.+.+. + + + .+.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~---~-~----~-------------~~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV---A-K----D-------------SPLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT---C-S----S-------------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc---c-C----C-------------hHHHHH
Confidence 6899999999999999999983 6555554 22222211 0 0 0 011111
Q ss_pred HHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeE
Q 002434 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRST 498 (922)
Q Consensus 419 ~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~ 498 (922)
.. ..+ |+. .-.+.|+.+|..+++.+..+|+.+-.+ ++.++|...+.+.+.+... .+.++
T Consensus 50 i~---------~~~--------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IV---------EHF--------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HH---------HHH--------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HH---------HHh--------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 11 111 111 123678899999999988887644332 2345565555555555432 35577
Q ss_pred EEEecCcchh---hccCEEEEEe
Q 002434 499 IIIARRLSLI---RNADYIAVMD 518 (922)
Q Consensus 499 i~itH~l~~~---~~~D~i~vl~ 518 (922)
|+-+|.+... +.||.+++++
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEechhhhcCcHhhCCEEEEEE
Confidence 7778876543 5699999985
No 194
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.99 E-value=7.5e-06 Score=100.62 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCC-CeEEE-EecCcchhhc
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTG-GLDFEAERAVQEALDLLMLG-RSTII-IARRLSLIRN 510 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~-~t~i~-itH~l~~~~~ 510 (922)
.-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+....++ +++++ .||..+.+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 4578999999999999999999999999997 89988766666666555544 45555 3787765543
No 195
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.99 E-value=1.1e-06 Score=88.05 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=48.0
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE--eCCCCCH----HHHhhcceEEecCCC
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE--NIKNLKL----EWLRSQIGLVTQEPA 395 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~--~i~~~~~----~~lr~~i~~v~Q~~~ 395 (922)
+++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++-.... ...+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6899999999 99999999999999999999988887775433221 1111100 013457888988863
No 196
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.99 E-value=9.6e-06 Score=90.69 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe--cCc
Q 002434 445 LALTEEQKIKLSIARAVLLNPSILLLD-EVTGGLDFEAERAVQEALDLLMLGRSTIIIA--RRL 505 (922)
Q Consensus 445 ~~LSGGqkQRiaiARAl~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~t~i~it--H~l 505 (922)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 467999999887 66666777788999 9999999998877777776655578888888 554
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.99 E-value=4.4e-06 Score=92.19 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=25.2
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+++|+.+.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999887754
No 198
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.97 E-value=2.9e-07 Score=96.43 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=47.9
Q ss_pred eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCC------CHHH----HhhcceEEecCCCCc
Q 002434 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL------KLEW----LRSQIGLVTQEPALL 397 (922)
Q Consensus 330 isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~------~~~~----lr~~i~~v~Q~~~lf 397 (922)
-+.+.++|++++|+|++||||||++++|.++ .|+|.+++.|.... .... .++.+++++|++.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 3445689999999999999999999999997 78999998875421 1111 145677788776554
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.97 E-value=9.7e-07 Score=90.95 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=45.7
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP-TLGEVL----------LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~-~~G~I~----------i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
++|++++|+||||||||||++.|++.++| ..+.+. .+|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999987 333332 234444445555555543 3445555555555
Q ss_pred H
Q 002434 404 N 404 (922)
Q Consensus 404 N 404 (922)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 5
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.97 E-value=1.7e-05 Score=87.66 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=79.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+ .+.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC------------
Confidence 457777667999999999999999999999877653322111 3444332
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHH
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~LD~~~~~~ 484 (922)
+.+.+++..-+-.+...-....+-. ..||++++||++.|...+.+++++|.|+|...+| .
T Consensus 83 -----Ems~~ql~~Rlls~~~~v~~~~l~~----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~ 142 (338)
T 4a1f_A 83 -----EMSAEQLALRALSDLTSINMHDLES----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----Q 142 (338)
T ss_dssp -----SSCHHHHHHHHHHHHHCCCHHHHHH----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----H
T ss_pred -----CCCHHHHHHHHHHHhhCCCHHHHhc----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----H
Confidence 2344444433222211111122211 2699999999999999999999999999876543 3
Q ss_pred HHHHHHHHc--C-CCeEEEE
Q 002434 485 VQEALDLLM--L-GRSTIII 501 (922)
Q Consensus 485 i~~~l~~~~--~-~~t~i~i 501 (922)
+...++++. . +..+|+|
T Consensus 143 i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 333343332 2 4556655
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.92 E-value=1.8e-05 Score=90.26 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i 375 (922)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4689999999999999999999999988888887766553
No 202
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.88 E-value=2.1e-06 Score=95.25 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=49.9
Q ss_pred CcccEEEEeEEEEeCCCCCCCccc--------------ceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 305 VHGNIEFRNVYFSYLSRPEIPILS--------------GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 305 ~~g~i~~~~v~f~y~~~~~~~vL~--------------~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
..+.+.|+||+|.||. ++.+|+ |+++.+.+|++++|+||+|+|||||++.|.+..
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3578999999999984 467899 999999999999999999999999999999875
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.85 E-value=4.4e-06 Score=89.32 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=50.9
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEeC
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~~ 519 (922)
|++|||||..+|++++||||| |+++...+ ++....|.|+++++|+.+....|||+++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 899999999999999999999 98875543 3444568999999999997777999988864
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=1.3e-05 Score=91.34 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=88.1
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHH-H---hhcceEEecCCCCccccHHH
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-L---RSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~-l---r~~i~~v~Q~~~lf~~ti~e 403 (922)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ + +++.+ ..+|..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~g-----v~v~~~---- 159 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG-----VPVLEV---- 159 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHT-----CCEEEC----
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCC-----ccEEec----
Confidence 567777 89999999999999999999999999999999999888776543322 2 11111 011110
Q ss_pred HHhcCcCCCHHHHHHHHHHHHHHHhHHHh-hccchhhhcCCCCCC---CHHHHHHHHHHHhhccCCCEEEEeCCCCCCCH
Q 002434 404 NIAYGRDATLDQIEEAAKIAHAHTFISSL-EKGYETQVGRAGLAL---TEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l-~~g~~t~vge~G~~L---SGGqkQRiaiARAl~~~p~iliLDEpts~LD~ 479 (922)
+...+..++. .+.+..+ .++||..+=+-+..+ .....+...+++++..++-+|++| ++++.|.
T Consensus 160 ----~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 160 ----MDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp ----CTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred ----CCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 0112333331 1223333 356776654433333 234667778888886666677788 5556555
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEec
Q 002434 480 EAERAVQEALDLLMLGRSTIIIAR 503 (922)
Q Consensus 480 ~~~~~i~~~l~~~~~~~t~i~itH 503 (922)
.... +.+... -+.+-|++|+
T Consensus 227 v~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHHH---HHHHHH-TCCCEEEEES
T ss_pred HHHH---HHHHhc-CCceEEEEeC
Confidence 4221 222221 2456777775
No 205
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.79 E-value=3.7e-06 Score=83.60 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=33.6
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK 376 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~ 376 (922)
.+|++++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 469999999999999999999999865 88999987664
No 206
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.73 E-value=2.9e-06 Score=100.26 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=47.2
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 311 ~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
++++...|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+.+.+..|+|.++|
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344444442 234688888888 8999999999999999999999999998888887776
No 207
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.69 E-value=7.5e-06 Score=83.71 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=40.6
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCH
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~ 380 (922)
..++|++++|+|++||||||+++.|.+.+++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 356799999999999999999999999998889999887766554443
No 208
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.66 E-value=0.00012 Score=81.97 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCCeEEEEecCcchh
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM----LGRSTIIIARRLSLI 508 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~ 508 (922)
.+|.+|++||+... |......+.+.+.+.. .+.++|+++|+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8777777766664433 356778888987543
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.66 E-value=2.4e-05 Score=86.93 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888764
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=1.7e-05 Score=87.86 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCcccceeEEecCCCE--EEEeCCCCCcHHHHHHHHhcCCCCCCc
Q 002434 324 IPILSGFYLTVPAKKA--VALVGRNGSGKSSIIPLMERFYDPTLG 366 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~g~~~~~~G 366 (922)
..+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3588999999999998 999999999999999999998766544
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.38 E-value=1.8e-05 Score=79.11 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=33.0
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc--EEEECCEeC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLG--EVLLDGENI 375 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G--~I~i~g~~i 375 (922)
++|+.++|+|++||||||++++|.+.+++ .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 667776443
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.31 E-value=0.00019 Score=82.41 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEecCc-chhhc-cCEEEE-EeCCeEEEecCHH
Q 002434 464 NPSILLLDEVTGGLDF-EAERAVQEALDLLM-LGRSTIIIARRL-SLIRN-ADYIAV-MDEGRLFEMGTHD 529 (922)
Q Consensus 464 ~p~iliLDEpts~LD~-~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~~~-~D~i~v-l~~G~i~~~G~~~ 529 (922)
+|++|++||+..-.+. .++..+...+.... .++++|++||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887764 56777777777654 467888888884 33221 222222 4556666666543
No 213
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.31 E-value=0.00026 Score=76.49 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.0
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++..+.|.||+|+||||+++.+.+.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 357889999999999999999999854
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.31 E-value=2.9e-06 Score=86.24 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=27.3
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~ 374 (922)
..+++|+|++||||||+.+.|... |-..+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999985 666776533
No 215
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.30 E-value=0.00018 Score=78.89 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHH
Q 002434 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD 403 (922)
Q Consensus 324 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~e 403 (922)
.+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- .| ..+.|++-|
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE---------- 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE---------- 105 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS----------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC----------
Confidence 3467887766999999999999999999998777642110 11 134444432
Q ss_pred HHhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Q 002434 404 NIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (922)
Q Consensus 404 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L 477 (922)
.+.+++.+-+......-.+..+..|. ..||++++||++.|...+.++++++.|+|...+
T Consensus 106 -------~s~~~l~~R~~~~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 106 -------MGKKENIKRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp -------SCHHHHHHHHHHHHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred -------CCHHHHHHHHHHHHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 23444433332221111112221221 127888999999999999999999999987543
No 216
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=4.2e-05 Score=94.47 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.1
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
+.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998753
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.26 E-value=8.8e-05 Score=80.85 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+.+++|+|++|+|||||++.|+|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 448999999999999999999985
No 218
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.25 E-value=0.00015 Score=83.38 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=38.5
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYD------------PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~------------~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf 397 (922)
-+++|+|++|+|||||++.|+|... |..|.+.++|.++.-++...+++..++.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 3799999999999999999999853 77899999998765555444455555555554444
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.24 E-value=0.0015 Score=68.14 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCc
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPTLG 366 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~~G 366 (922)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.20 E-value=0.00011 Score=76.92 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=31.8
Q ss_pred ccceeEEec---CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 002434 327 LSGFYLTVP---AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (922)
Q Consensus 327 L~~isl~i~---~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i 370 (922)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 666644
No 221
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.20 E-value=4.3e-05 Score=84.84 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=45.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeC
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i 375 (922)
.+++++++.+++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 578899999999999999999999999999999999988888777655544
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.20 E-value=8.3e-05 Score=77.81 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCEEEEeCCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEeCCCCC-HHHHhhcceEEec------CCCCcc
Q 002434 337 KKAVALVGRNGSGKSSIIPLME---RFYDPTLGEVL--------LDGENIKNLK-LEWLRSQIGLVTQ------EPALLS 398 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~---g~~~~~~G~I~--------i~g~~i~~~~-~~~lr~~i~~v~Q------~~~lf~ 398 (922)
.-.++|+||+||||||+.+.|. |+...+.|.++ -.|.++.+.. ...+.+++.+..+ ..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 55455566652 3466555432 3455566666663 333444
Q ss_pred ccHHHHH
Q 002434 399 LSIRDNI 405 (922)
Q Consensus 399 ~ti~eNi 405 (922)
..|.++|
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 4554444
No 223
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.17 E-value=8.1e-05 Score=82.93 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=26.1
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPT 364 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~ 364 (922)
+++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876553
No 224
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.14 E-value=0.00011 Score=74.50 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=31.5
Q ss_pred EEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 315 YFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 315 ~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|++ -.++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456653 346899999998887 588999999999999999986
No 225
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00041 Score=72.47 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=70.6
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCc-cccHHHHHhcCcCCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDAT 412 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~ 412 (922)
+.+|+.+.++||+||||||++.+++.......|. ...+.++.+.|... ..++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999887664321111111 12467777777654 345666664221100
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccchhhhcC----CC---CCCCHHHHHHHHHHHhhccCCCEEEEeCCCC-CCCHHHHHH
Q 002434 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGR----AG---LALTEEQKIKLSIARAVLLNPSILLLDEVTG-GLDFEAERA 484 (922)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~l~~g~~t~vge----~G---~~LSGGqkQRiaiARAl~~~p~iliLDEpts-~LD~~~~~~ 484 (922)
- ....|+...... .+ .--+.|+-.+.. +.-+++-+++|+||+=. ++|......
T Consensus 137 ~-----------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 137 P-----------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp T-----------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred c-----------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHH
Confidence 0 001121111110 00 012446555543 44689999999999976 577765543
Q ss_pred HHHHHHHHcCCCeEEE
Q 002434 485 VQEALDLLMLGRSTII 500 (922)
Q Consensus 485 i~~~l~~~~~~~t~i~ 500 (922)
..+.+.....+..+|+
T Consensus 198 ~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 198 VLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHCTTSEEEE
T ss_pred HHHHHHhhCCCCeEEE
Confidence 4444444434433333
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.0013 Score=69.37 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=28.8
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEe
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~ 374 (922)
++++++.+++| +.|+||+|+||||++++|.+.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44444555555 8999999999999999999876422 35555543
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.0015 Score=72.76 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred CcccceeEE---ecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 325 PILSGFYLT---VPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 325 ~vL~~isl~---i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+.|+.+ +. +++|+.+.|.|++|+|||||+..++..
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456665 33 889999999999999999999777653
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.09 E-value=6.7e-05 Score=77.07 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=37.5
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc--EEEECCE
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG--EVLLDGE 373 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G--~I~i~g~ 373 (922)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45778999999999999999999999999988888 8888863
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00021 Score=70.46 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999997654 55654
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.03 E-value=0.00011 Score=74.96 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=26.1
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..+|..++|+|||||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999988764
No 231
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.01 E-value=0.00015 Score=80.83 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~ 377 (922)
++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 467999999999999999999999999988988887766543
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.00037 Score=70.67 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.8
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
..+.|.||+|+|||||++.+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999876543
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.93 E-value=0.00065 Score=74.41 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
++..+.|.||+|+|||||++.+.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999886543
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.90 E-value=0.0005 Score=69.05 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=20.7
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 688999998877 789999999999999999987
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.00046 Score=71.31 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
++..+.|.||+|+||||+++.+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987554
No 236
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.83 E-value=0.0016 Score=70.60 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=27.4
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+.++++..+.|.||+|+||||+++.+.+...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567899999999999999999999998653
No 237
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.00025 Score=78.33 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcc
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS 506 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 506 (922)
++.++++|| ...+++.....+.+.+++...+..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 678888888888888877655555667776654
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.81 E-value=0.00087 Score=72.61 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.8
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I 368 (922)
..+.|+||+|+||||+++.|.+.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
No 239
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.79 E-value=0.00069 Score=66.89 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++|.+++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 240
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.75 E-value=0.0008 Score=65.26 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=24.9
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHh
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 358 (922)
++..+++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556666655 89999999999999999986
No 241
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0023 Score=68.37 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++++..+.|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998764
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.66 E-value=0.00027 Score=76.84 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=41.8
Q ss_pred cc-eeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCC
Q 002434 328 SG-FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377 (922)
Q Consensus 328 ~~-isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~ 377 (922)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 35 777776 99999999999999999999999999888899887766543
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.52 E-value=0.0011 Score=66.36 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred ceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 329 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0014 Score=71.74 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.3
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 245
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.39 E-value=0.0027 Score=73.21 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchh
Q 002434 451 QKIKLSIARAVLLNPSILLLDE-VTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (922)
Q Consensus 451 qkQRiaiARAl~~~p~iliLDE-pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~ 508 (922)
|++....++..+++++++|+.. ++.++.... ..+.+.+++ .++.+|++.++.+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 7777778888888999877543 444455544 445555543 578899998887654
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.39 E-value=0.00033 Score=78.26 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=36.4
Q ss_pred cccEEEEeEEEEeCCCCCCCcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 306 ~g~i~~~~v~f~y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
.+.+.++|++..|. .+.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 45688999988884 346889999976 99999999999999999887666556554443
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.001 Score=66.61 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=33.2
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-EECC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-LLDG 372 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-~i~g 372 (922)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999887777765 4554
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.38 E-value=0.0016 Score=73.20 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=34.4
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERF-----------YDPTLGEVLLDGE 373 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~-----------~~~~~G~I~i~g~ 373 (922)
.++.|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898887763
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0002 Score=72.49 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.++|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999884
No 250
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.34 E-value=0.0064 Score=58.25 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=25.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~ 365 (922)
+.+.-+.|.||+|+|||++++.|........
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 4566789999999999999999988655433
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.00099 Score=70.44 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=33.1
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i 375 (922)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998765 35678888443
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.32 E-value=0.0031 Score=61.47 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 253
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.27 E-value=7.3e-05 Score=83.73 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred cCCCCCCCHHHHHHHHHHHhh---cc--CCCEEEEeCCC
Q 002434 441 GRAGLALTEEQKIKLSIARAV---LL--NPSILLLDEVT 474 (922)
Q Consensus 441 ge~G~~LSGGqkQRiaiARAl---~~--~p~iliLDEpt 474 (922)
.++|.++||||+||++++|+| ++ +++++++|||+
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 367889999999999999999 77 89999999997
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.23 E-value=0.0069 Score=69.46 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=66.3
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHH
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 404 (922)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| ..+.|++=|
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECC-----------
Confidence 457777656899999999999999999999877653321111 123443332
Q ss_pred HhcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Q 002434 405 IAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (922)
Q Consensus 405 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpts~L 477 (922)
.+.+++.+-+.... .|.+..--.. ..|+..+++|+.-|-..+.+.++++.|+|...+
T Consensus 239 ------~~~~~l~~R~~~~~---------~~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 239 ------MPAAQLTLRMMCSE---------ARIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp ------SCHHHHHHHHHHHH---------TTCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred ------CCHHHHHHHHHHHH---------cCCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 23334333221111 1111100011 268999999999888888888999988765443
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0011 Score=67.34 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
..+++|+|++||||||+++.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998765 4555655
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.21 E-value=0.018 Score=65.58 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=26.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I 368 (922)
++.+++++|++|+||||++..|+..+....-+|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kV 131 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKV 131 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeE
Confidence 356899999999999999999988776543344
No 257
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.20 E-value=0.008 Score=63.17 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|||++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999753
No 258
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0024 Score=63.34 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 259
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.13 E-value=0.0055 Score=62.64 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=30.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS 506 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 506 (922)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999765 677777777776654434556677777654
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.10 E-value=0.0019 Score=64.32 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCCCC---CcEEEECCE
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGE 373 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~~~---~G~I~i~g~ 373 (922)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3589999999999999999999876543 255555553
No 261
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.99 E-value=0.0038 Score=63.70 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=24.6
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHh
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 358 (922)
.+.++.+.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3556666664 89999999999999999885
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.96 E-value=0.027 Score=58.97 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998754
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.94 E-value=0.0024 Score=64.34 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=33.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC-------------CCCCcEEEECCEeCCCCCHHHHhhcc
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY-------------DPTLGEVLLDGENIKNLKLEWLRSQI 387 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~-------------~~~~G~I~i~g~~i~~~~~~~lr~~i 387 (922)
.+.|+||||||||||++.|...+ +|-.|++ ||+|..-++.++..+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH
Confidence 37899999999999999887543 2345653 77777666666665543
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.86 E-value=0.0038 Score=61.97 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPT 364 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~ 364 (922)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
No 265
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.83 E-value=0.0037 Score=63.24 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.76 E-value=0.002 Score=71.13 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=33.7
Q ss_pred CcccceeEEecCCCE--EEEeCCCCCcHHHHHHHHhcCC
Q 002434 325 PILSGFYLTVPAKKA--VALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 325 ~vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998764
No 267
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.72 E-value=0.0031 Score=70.66 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcchhhccCEEEEEe
Q 002434 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (922)
Q Consensus 454 RiaiARAl~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~D~i~vl~ 518 (922)
+.+|+++|..+|+++++|||| |+++ +..+++....|.+++.++|..+....+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhc
Confidence 569999999999999999999 7665 3344555556889988889887666688876653
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.026 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.7
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++...+.|.||+|+||||+++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.61 E-value=0.0049 Score=61.24 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.+|..++|+|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999754
No 270
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.0042 Score=68.97 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
No 271
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.58 E-value=0.017 Score=64.00 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=29.5
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
.+|..+.|.||+|+||||+++.+...+.....-+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999987764434445544
No 272
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.57 E-value=0.011 Score=58.88 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=25.5
Q ss_pred EEEEeCCCCCcHHHHHHHHh-cC----CCCCCc----EEEECC
Q 002434 339 AVALVGRNGSGKSSIIPLME-RF----YDPTLG----EVLLDG 372 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~-g~----~~~~~G----~I~i~g 372 (922)
+++|+|++|+|||||++.+. +. +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 78999999999999997555 43 566656 455555
No 273
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.56 E-value=0.037 Score=61.70 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=23.7
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
-+++|+.+.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999976654
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.52 E-value=0.0056 Score=68.95 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=36.2
Q ss_pred CCCcccceeEEe---cCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 002434 323 EIPILSGFYLTV---PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371 (922)
Q Consensus 323 ~~~vL~~isl~i---~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~ 371 (922)
+.+++-|+ +.. ..+..++|+|++||||||+++.|+..+.+..+.|.+-
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555555 222 2577899999999999999999998777778888763
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.51 E-value=0.0072 Score=59.53 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999987654
No 276
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.49 E-value=0.052 Score=58.37 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..+.|.||+|+||||+++.+...+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887655
No 277
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.46 E-value=0.093 Score=57.30 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++..-+.|.||+|+|||+|++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 278
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.46 E-value=0.021 Score=65.47 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCEeCCCCCHHHHhhcceEEecCCCCccccHHHHH
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eNi 405 (922)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.--. | ..+.|++=|
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g------------------~~vl~fSlE------------ 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------------------DVVNLHSLE------------ 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T------------------CEEEEECSS------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C------------------CEEEEEECC------------
Confidence 455554458999999999999999999986665421100 1 134444332
Q ss_pred hcCcCCCHHHHHHHHHHHHHHHhHHHhhccchhhhcCCCCCCCHHHHHHHHHHHhhccCCCEEEEeCCC
Q 002434 406 AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474 (922)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vge~G~~LSGGqkQRiaiARAl~~~p~iliLDEpt 474 (922)
.+.+++..-+......-....+..|. ..|+..+.+|+.-|...+.+.+++|.|+|.
T Consensus 235 -----ms~~ql~~R~~~~~~~i~~~~l~~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~ 290 (444)
T 3bgw_A 235 -----MGKKENIKRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG 290 (444)
T ss_dssp -----SCTTHHHHHHHHHHSCCCHHHHHHTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS
T ss_pred -----CCHHHHHHHHHHHHcCCCHHHHhccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 22333332222111111111222221 126777889998888888888999999874
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.31 E-value=0.0087 Score=64.50 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
+|..+.|+|||||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 466899999999999999999987553 36677776
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.28 E-value=0.0081 Score=58.56 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 281
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.26 E-value=0.013 Score=65.03 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhc-----------CCCCCCcEEEECC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMER-----------FYDPTLGEVLLDG 372 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g-----------~~~~~~G~I~i~g 372 (922)
|-+++|||.+|+|||||++.|++ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 4467788887765
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.22 E-value=0.0024 Score=64.98 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=23.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDPT 364 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~~ 364 (922)
+++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887654
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.20 E-value=0.011 Score=59.58 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.7
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.20 E-value=0.0099 Score=59.02 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+|..+.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997644
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.17 E-value=0.0098 Score=61.86 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
++|.+++|+|++||||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999863
No 286
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.028 Score=56.55 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 505 (922)
.++.++++||. ..++......+.+.+.....+..+|++|++.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46889999996 4466776677777776644444455555554
No 287
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.15 E-value=0.025 Score=61.54 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 332 LTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 332 l~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
--+++|..+.|.||+|+|||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999988874
No 288
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.10 E-value=0.038 Score=52.66 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.5
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+.+.-+.|.||+|+|||++++.|....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 445678999999999999999987653
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.07 E-value=0.011 Score=58.58 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997644
No 290
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.02 E-value=0.026 Score=60.81 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
...+.|.||+|+|||+|++.|++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999998765
No 291
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.01 E-value=0.0094 Score=58.96 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.9
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.00 E-value=0.016 Score=60.06 Aligned_cols=51 Identities=24% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc-----------chhhccCEEEEEe
Q 002434 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL-----------SLIRNADYIAVMD 518 (922)
Q Consensus 464 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l-----------~~~~~~D~i~vl~ 518 (922)
+++++++||+-- |+.+.-..+ ..+.+ .+.++|++-|+. ..+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 689999999964 665422222 22322 478888888932 3445688888775
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.96 E-value=0.053 Score=71.08 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=30.7
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEE-EECC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-LLDG 372 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I-~i~g 372 (922)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999988876554444443 4454
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.96 E-value=0.011 Score=57.32 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q 002434 339 AVALVGRNGSGKSSIIPLM 357 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll 357 (922)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.95 E-value=0.01 Score=59.10 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997643
No 296
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.91 E-value=0.014 Score=59.71 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=25.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g 372 (922)
++.+++|+|++||||||+++.|..+ |-..+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999872 5455554
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.85 E-value=0.0096 Score=58.91 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999997543
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.67 E-value=0.015 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.8
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 299
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.65 E-value=0.012 Score=64.11 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.8
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4577877877 789999999999999999998886
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.62 E-value=0.066 Score=60.72 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.0
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.-++...+.|+|++||||||+.+.|..-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998764
No 301
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.59 E-value=0.016 Score=58.72 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++|..++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997643
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.017 Score=58.26 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876654
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.53 E-value=0.012 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
..++|+|++|||||||+..|.+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887653
No 304
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.46 E-value=0.081 Score=58.59 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++.-+.|.||+|+|||||++.+...+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999998764
No 305
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.46 E-value=0.018 Score=58.44 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.1
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.42 E-value=0.017 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998644
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.40 E-value=0.017 Score=60.93 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.1
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+.++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.35 E-value=0.043 Score=53.31 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+.-+++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 309
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.34 E-value=0.02 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~ 371 (922)
..+.|+|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999871 12555554
No 310
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.26 E-value=0.068 Score=58.98 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=28.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCcc
Q 002434 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS 506 (922)
Q Consensus 463 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 506 (922)
.++.++++||+- .++......+.+.+++...+..+|++|++..
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 357899999963 4677777777777655434445666777654
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.23 E-value=0.022 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987543
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.14 E-value=0.018 Score=56.82 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=18.4
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999997544
No 313
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.14 E-value=0.022 Score=63.64 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.5
Q ss_pred ccceeEEecCCCEEEEeCCCCCcHHHHHHHHh
Q 002434 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (922)
Q Consensus 327 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 358 (922)
+++..+++.+| .++|+|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777777775 89999999999999998875
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.11 E-value=0.017 Score=57.68 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+++.+++|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998654
No 315
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.042 Score=52.79 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 316
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.05 E-value=0.028 Score=57.55 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=23.2
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++|..+.|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998644
No 317
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.05 E-value=0.076 Score=57.62 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHcCCCeEEEEecCcc
Q 002434 464 NPSILLLDEVTGGLD-FEAERAVQEALDLLMLGRSTIIIARRLS 506 (922)
Q Consensus 464 ~p~iliLDEpts~LD-~~~~~~i~~~l~~~~~~~t~i~itH~l~ 506 (922)
+++++++||+-. +. ......+.+.++....+..+|++|++..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 789999999843 34 5566666777766655667777887754
No 318
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.99 E-value=0.06 Score=58.42 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.6
Q ss_pred ecCCCEEEEeCCCCCcHHHHH-HHHhc
Q 002434 334 VPAKKAVALVGRNGSGKSSII-PLMER 359 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~-~ll~g 359 (922)
+++| .+-|.||+|||||||+ +++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 6789 9999999999999995 44433
No 319
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.97 E-value=0.022 Score=57.21 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999753
No 320
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.19 Score=57.22 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.3
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
-+++-.-+.+.||+|+|||+|++++++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356667799999999999999999998643
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.82 E-value=0.025 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
.+.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.76 E-value=0.03 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.71 E-value=0.036 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+.+++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998644
No 324
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.70 E-value=0.21 Score=57.06 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+..-+.|.||+|+|||+|++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999865
No 325
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.67 E-value=0.046 Score=52.51 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998654
No 326
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.63 E-value=0.027 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998643
No 327
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.032 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.6
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
-+++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998754
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.62 E-value=0.033 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.61 E-value=0.035 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998643
No 330
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.60 E-value=0.034 Score=53.10 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.57 E-value=0.031 Score=57.53 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=22.4
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 332
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.57 E-value=0.028 Score=62.72 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|||++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 333
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.55 E-value=0.18 Score=54.51 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999997643
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.55 E-value=0.036 Score=55.79 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.2
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..+++|.|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998644
No 335
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.55 E-value=0.25 Score=55.17 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++..+.|.||+|+|||++++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998753
No 336
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.54 E-value=0.093 Score=64.25 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+.|+||+|+|||++++.|...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 337
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.16 Score=57.09 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.4
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++-.-+.+.||+|+|||+|++++++..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4445558899999999999999999854
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.50 E-value=0.035 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999996543
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.50 E-value=0.036 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 340
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.49 E-value=0.029 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998643
No 341
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.48 E-value=0.038 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 342
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.45 E-value=0.037 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 343
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.056 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.44 E-value=0.028 Score=58.15 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=25.7
Q ss_pred hccCCCEEEEeCCCCC-CCH-HHHHHHHHHHHHHcCCCeEEEEec
Q 002434 461 VLLNPSILLLDEVTGG-LDF-EAERAVQEALDLLMLGRSTIIIAR 503 (922)
Q Consensus 461 l~~~p~iliLDEpts~-LD~-~~~~~i~~~l~~~~~~~t~i~itH 503 (922)
+.++|+++|+||+-.. .+. .+...+++....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997642 332 233334444334445667777776
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.43 E-value=0.034 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 346
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.40 E-value=0.036 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.38 E-value=0.032 Score=57.19 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.36 E-value=0.037 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.9
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997643
No 349
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.36 E-value=0.076 Score=52.12 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999863
No 350
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.36 E-value=0.035 Score=58.61 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 351
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.35 E-value=0.039 Score=52.87 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 352
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.35 E-value=0.039 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 353
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.32 E-value=0.034 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 354
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.28 E-value=0.04 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 355
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.27 E-value=0.041 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.27 E-value=0.051 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 357
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.26 E-value=0.043 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+.++|.|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999763
No 358
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.25 E-value=0.041 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 359
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.23 E-value=0.041 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997544
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.20 E-value=0.043 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.20 E-value=0.044 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 362
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.20 E-value=0.04 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.17 E-value=0.045 Score=57.25 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++-.++|.|++||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999997543
No 364
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.16 E-value=0.037 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 365
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.12 E-value=0.044 Score=58.50 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.11 E-value=0.046 Score=53.95 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
+++++|++|+|||||++.+.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999986653
No 367
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.10 E-value=0.051 Score=59.59 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998653
No 368
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.07 E-value=0.027 Score=60.66 Aligned_cols=26 Identities=15% Similarity=0.523 Sum_probs=19.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997643
No 369
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.06 E-value=0.045 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.04 E-value=0.036 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
No 371
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.02 E-value=0.04 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 372
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.99 E-value=0.22 Score=66.12 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.6
Q ss_pred CcccceeE--EecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EEEECC
Q 002434 325 PILSGFYL--TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDG 372 (922)
Q Consensus 325 ~vL~~isl--~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I~i~g 372 (922)
+-|+.+-= =+++|+.+.|.||+|+|||||+.-++.......+ -+++++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34555421 2899999999999999999998777654332222 334554
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.98 E-value=0.039 Score=54.69 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
--+++++|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 374
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.97 E-value=0.047 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 375
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.97 E-value=0.048 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-.++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.94 E-value=0.048 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 377
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.93 E-value=0.074 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.91 E-value=0.05 Score=57.46 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
++..+.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 379
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.90 E-value=0.041 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998753
No 380
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.28 Score=55.68 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.4
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
-+++..-+.+.||+|+|||+|++++++..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34556669999999999999999999754
No 381
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.87 E-value=0.27 Score=53.55 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.3
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
..+.|.||+|+||||+++.+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.85 E-value=0.05 Score=53.49 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 383
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.84 E-value=0.055 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.82 E-value=0.052 Score=51.94 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 385
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.81 E-value=0.04 Score=58.62 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.++|||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 386
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.75 E-value=0.053 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhc
Q 002434 338 KAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g 359 (922)
-+++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 387
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.72 E-value=0.053 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.1
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997743
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.68 E-value=0.072 Score=52.42 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 389
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.055 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 390
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.65 E-value=0.046 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 391
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.64 E-value=0.0078 Score=74.23 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred ceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 002434 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373 (922)
Q Consensus 329 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~g~ 373 (922)
..++.+++|+.+.|+||+|+|||||+++|++.+. .+-+.+++.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~ 545 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 545 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCS
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEech
Confidence 3567789999999999999999999999999874 234445543
No 392
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.57 E-value=0.058 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.53 E-value=0.058 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 394
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.52 E-value=0.06 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 395
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.50 E-value=0.051 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 396
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.48 E-value=0.058 Score=58.39 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 397
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.47 E-value=0.06 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999985
No 398
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.43 E-value=0.29 Score=64.25 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=27.5
Q ss_pred CcccceeEE---ecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 325 PILSGFYLT---VPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 325 ~vL~~isl~---i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
+-|+.+ +. +++|+.+.|.||+|+|||||+.-++.
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446665 33 88999999999999999999876654
No 399
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.43 E-value=0.083 Score=53.45 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=28.0
Q ss_pred CcccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 325 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
..++..-+.+ .|..+.|+||||+|||||...|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566665555 5789999999999999999888754
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.35 E-value=0.093 Score=51.17 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEeCCCCCcHHHHHHHHh
Q 002434 339 AVALVGRNGSGKSSIIPLME 358 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~ 358 (922)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.34 E-value=0.059 Score=55.10 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+|-.+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999997654
No 402
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.33 E-value=0.083 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHhc
Q 002434 338 KAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g 359 (922)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999986
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.25 E-value=0.067 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999999885
No 404
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.23 E-value=0.067 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 405
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.22 E-value=0.083 Score=56.83 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHhcCC
Q 002434 340 VALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 340 vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+.|.||.|+||||+++.+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998654
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.22 E-value=0.067 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.19 E-value=0.061 Score=57.60 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhc
Q 002434 337 KKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g 359 (922)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 408
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.15 E-value=0.068 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 409
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.12 E-value=0.061 Score=56.46 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.++|+|++|+|||||++.|+|-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 410
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.10 E-value=0.069 Score=57.95 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+|+|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999874
No 411
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.08 E-value=0.043 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.5
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344899999999999999998863
No 412
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.08 E-value=0.07 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998754
No 413
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.07 E-value=0.061 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 414
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.05 E-value=0.072 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 415
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.03 E-value=0.19 Score=58.19 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.2
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++..-+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4566779999999999999999998754
No 416
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.02 E-value=0.074 Score=52.51 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 417
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.02 E-value=0.36 Score=64.27 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=31.6
Q ss_pred CCccccee--EEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 324 IPILSGFY--LTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 324 ~~vL~~is--l~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
.+.|+++. .-+++|+.+.++||+|||||||...+.-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788887 5799999999999999999999988763
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.01 E-value=0.082 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 419
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.00 E-value=0.073 Score=53.10 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|||++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.98 E-value=0.075 Score=51.88 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.97 E-value=0.073 Score=55.19 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=21.7
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
.+|..+.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999976553
No 422
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.96 E-value=0.078 Score=52.96 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 423
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.066 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.90 E-value=0.079 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997644
No 425
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.88 E-value=0.089 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.9
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
..+..+.|+||+|+||||+++.+...+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.83 E-value=0.093 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.+..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.82 E-value=0.069 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 789999999999999999986
No 428
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.81 E-value=0.075 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 429
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.79 E-value=0.078 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+++++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999763
No 430
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.78 E-value=0.082 Score=55.81 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|+|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.73 E-value=0.07 Score=58.61 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..++|+||+|||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987654
No 432
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.71 E-value=0.081 Score=52.37 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.71 E-value=0.11 Score=52.55 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.70 E-value=0.096 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
=+++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 435
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.69 E-value=0.044 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
-+++|+|++|+|||||++.|++-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.68 E-value=0.071 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 37899999999999999999864
No 437
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.68 E-value=0.073 Score=56.70 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|||||||++.|+|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.66 E-value=0.081 Score=54.41 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.8
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999876654
No 439
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.66 E-value=0.07 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 440
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.64 E-value=0.074 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.62 E-value=0.081 Score=54.42 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.5
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
..++..++.|+||.||||+|..+.|..-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998655
No 442
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.60 E-value=0.092 Score=53.84 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=24.7
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
.+|..+.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999776543
No 443
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.59 E-value=0.039 Score=63.16 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.8
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+++.+ +.+-+|++++|+|++|+|||||++.|.+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45555 6677899999999999999999999976443
No 444
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.57 E-value=0.075 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999999864
No 445
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.56 E-value=0.088 Score=52.20 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.088 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999764
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.55 E-value=0.089 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 448
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.50 E-value=0.091 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999863
No 449
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.50 E-value=0.089 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999853
No 450
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.58 Score=52.82 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.0
Q ss_pred EecCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 333 ~i~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
-+++..-+.+.||+|+|||+|++++++...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 355666799999999999999999998643
No 451
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.45 E-value=0.35 Score=52.20 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+.+..+.|.||+|+|||++++.|....+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4566789999999999999999987654
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.43 E-value=0.09 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
=+++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 453
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.39 E-value=0.09 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7899999999999999999875443
No 454
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.084 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhc
Q 002434 337 KKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g 359 (922)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999985
No 455
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.36 E-value=0.084 Score=52.86 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 456
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.34 E-value=0.27 Score=53.81 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
.+.+.||.|+||||+++.+.+.+.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 488999999999999999987554
No 457
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.29 E-value=0.094 Score=55.56 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=23.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcE
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGE 367 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~ 367 (922)
.+++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 458
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.26 E-value=0.077 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 459
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.25 E-value=0.07 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999997643
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.23 E-value=0.078 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 461
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.22 E-value=0.1 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 789999999999999988875
No 462
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.22 E-value=0.086 Score=53.06 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=23.2
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcC
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
.|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 333333333347999999999999999999874
No 463
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.21 E-value=0.17 Score=62.79 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=26.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCc-EEEECC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDG 372 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G-~I~i~g 372 (922)
..+.|+||+|+|||++++.|...+....+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47889999999999999999987654333 244544
No 464
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.20 E-value=0.086 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.9
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999988643
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.20 E-value=0.1 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 466
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.19 E-value=0.11 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhc
Q 002434 338 KAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g 359 (922)
=+++++|++|+|||||++.+.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999875
No 467
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.19 E-value=0.085 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|+|+.|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 468
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.12 E-value=0.09 Score=55.46 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.|+|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999974
No 469
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.11 E-value=0.1 Score=54.42 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999976554
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.05 E-value=0.11 Score=53.35 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+|.++.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999986654
No 471
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.03 E-value=0.073 Score=52.05 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=9.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 472
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.99 E-value=1.2 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=21.7
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
...++|+|++|+||||++..|+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999985543
No 473
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.98 E-value=0.12 Score=53.46 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.2
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
.+|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999976543
No 474
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.94 E-value=0.099 Score=53.02 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 475
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.93 E-value=0.14 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.5
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~ 360 (922)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999864
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.93 E-value=0.075 Score=56.05 Aligned_cols=28 Identities=18% Similarity=0.479 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
++|..++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987663
No 477
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.92 E-value=0.095 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
+++++|++|+|||||++.|++--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.86 E-value=0.1 Score=57.00 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..+.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 479
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.84 E-value=0.89 Score=51.64 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~~ 363 (922)
+...++++|++|+||||+..-|+..+.-
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999888866543
No 480
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.76 E-value=0.093 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 002434 339 AVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++|+|++|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999854
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.74 E-value=0.12 Score=55.51 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=23.9
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i~ 371 (922)
..+.|+|++||||||+.+.|...+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998632 2544554
No 482
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.69 E-value=0.1 Score=52.23 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 483
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.13 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|||++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.58 E-value=0.36 Score=55.55 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=55.3
Q ss_pred hhhcCCCCCCCHHHHHHHH--HHHhhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 002434 438 TQVGRAGLALTEEQKIKLS--IARAVLL---------------NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII 500 (922)
Q Consensus 438 t~vge~G~~LSGGqkQRia--iARAl~~---------------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 500 (922)
+........+||||+|-.- |+-|++. .-.+++|||| +-+|.+..+..++.++++ |--.|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445556789999999532 2323221 1257999999 999999999999998875 566777
Q ss_pred EecCcchhhccCEEEEEe
Q 002434 501 IARRLSLIRNADYIAVMD 518 (922)
Q Consensus 501 itH~l~~~~~~D~i~vl~ 518 (922)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 4446689988774
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.50 E-value=0.12 Score=53.76 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999987664
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.50 E-value=0.14 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 337 G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
...+.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998764
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.49 E-value=0.1 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
+.=+++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999864
No 488
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.48 E-value=0.11 Score=50.65 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.4
Q ss_pred cCCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 335 ~~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
..+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987654
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.43 E-value=0.13 Score=55.63 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHhcCCC
Q 002434 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (922)
Q Consensus 336 ~G~~vaivG~sGsGKSTl~~ll~g~~~ 362 (922)
++-+++++|++|+|||||++.+.+-+.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~ 28 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYS 28 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 455899999999999999999887543
No 490
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.39 E-value=1.5 Score=50.64 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=27.2
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
-|+.+---+++|+.+.|.|++|+|||||+.-++.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555543589999999999999999999866654
No 491
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.12 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.32 E-value=0.16 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=25.7
Q ss_pred cccceeEEecCCCEEEEeCCCCCcHHHHHHHHhc
Q 002434 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 326 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g 359 (922)
.++..-+.+ .|.-+.|.|+||+||||+...|..
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344444444 588999999999999999988775
No 493
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.31 E-value=0.059 Score=56.77 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=24.2
Q ss_pred cceeEEecCCCEEEEeCCCCCcHHHHHHHHhcCC
Q 002434 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (922)
Q Consensus 328 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~g~~ 361 (922)
.++....++| +.|.||+|+||||+++.+.+..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334444445 7899999999999999998743
No 494
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.26 E-value=0.17 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.7
Q ss_pred ecCCCEEEEeCCCCCcHHHHHHHH
Q 002434 334 VPAKKAVALVGRNGSGKSSIIPLM 357 (922)
Q Consensus 334 i~~G~~vaivG~sGsGKSTl~~ll 357 (922)
+++|+.+.|.|++|+||||++.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998544
No 495
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.05 E-value=0.071 Score=53.97 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 002434 339 AVALVGRNGSGKSSIIPLMER 359 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g 359 (922)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 496
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.91 E-value=0.13 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++-+++-
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999888764
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.90 E-value=0.049 Score=62.04 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=26.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 002434 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (922)
Q Consensus 338 ~~vaivG~sGsGKSTl~~ll~g~~~~~~G~I~i 370 (922)
..++++|++|+||||++..|++.+.....+|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999877644334443
No 498
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.87 E-value=0.081 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=4.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 499
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.69 E-value=0.16 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 500
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.68 E-value=0.14 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 002434 339 AVALVGRNGSGKSSIIPLMERF 360 (922)
Q Consensus 339 ~vaivG~sGsGKSTl~~ll~g~ 360 (922)
+++|+|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999998753
Done!