BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002435
(922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 198/695 (28%), Positives = 295/695 (42%), Gaps = 117/695 (16%)
Query: 227 LRGRIPSL--LGNLTKLMYLDLSFNNLLGELPTSIGN---LDCLKRLDISWNELSGELPA 281
L G + +L LG+ + L +L++S N L + P + L+ L+ LD+S N +SG
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGA--N 167
Query: 282 SIG-----NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
+G L+ L +S N+ G + L +L ++SN+FS +P G+ +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224
Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
L+ LDIS K S ++ +LK L S N F GPI + K L++LSL+ N+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENK 280
Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ-HYLEVLDLSCNKIHGKVPKWLIEP 455
F G E P+FL L LDLS N +G VP +
Sbjct: 281 ----------------FTG-------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 456 -----------------------SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG--FTLD 490
M+ L+LS N G + N TLD
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLD 374
Query: 491 LSYNYLQGPL-----PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
LS N GP+ P + + NN TGKIP + N S L L LS+N LSG
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGT 433
Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
+P L + S L L L N G IPQ + ++L + L N L G IP L NC++L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
++ L NN+++G P W+G L L +L L +N G I C L +DL+ N F
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 550
Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
G +P+ F+ + + RY+ + A + ++ S + +S
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
N ++S + G + N + L ++ N L G+I +G++ L L+L
Sbjct: 611 NPCN------ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLT------------------------GPIPQGN 821
+N SG IP ++ DL L ++S+N L GPIP+
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 822 QFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNED 856
QF TF F N GLCG PLP+ C+ P+N D
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 218/454 (48%), Gaps = 42/454 (9%)
Query: 224 GCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT-SIGNLDCLKRLDISWNELSGELPAS 282
G G +P G+ + L L LS NN GELP ++ + LK LD+S+NE SGELP S
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 283 IGNL-ASLEQLELSLNRFRGKT-PHSMGN-FTRLYWLSLASNDFSGELPASFGNLRSLEG 339
+ NL ASL L+LS N F G P+ N L L L +N F+G++P + N L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 340 LDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
L +S S IPSSL +L++L+ L+ N G I ++ V K LE L L N L+
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLT- 479
Query: 400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQN 459
E P+ L N L + LS N++ G++PKW+ ++N
Sbjct: 480 ----------------------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LEN 515
Query: 460 FSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTG 519
+ L LS+N G + R+ LDL+ N G +P + + +N + G
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSL--IWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAG 572
Query: 520 KIPFWICNSSNSLEILDLSYNNL---SGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
K +I N E NL G+ + L+ S + ++ + G TF
Sbjct: 573 KRYVYIKNDGMKKECH--GAGNLLEFQGIRSEQLNRLSTR-NPCNITSRVYGGHTSPTFD 629
Query: 577 SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
+ S+M +D+S N+L G IP+ + + L L+LG+N ISG+ P +G LR LN+L L S
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
NKL G I P L IDLSNN +G +P
Sbjct: 690 NKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 165/546 (30%), Positives = 239/546 (43%), Gaps = 100/546 (18%)
Query: 287 ASLEQLELSLNRFRG--KTPHSMGNFTRLYWLSLASN--DFSGELPASFGNLRSLEGLDI 342
ASL L+LS N G T S+G+ + L +L+++SN DF G++ L SLE LD+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 343 SECKFSSQ--IPSSLRN-LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
S S + L + +LK L S N SG +D+ + +LE L +SSN
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNN--- 211
Query: 400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQN 459
F+ I FL + L+ LD+S NK+ G + ++
Sbjct: 212 FSTGI---------------------PFLGDCSALQHLDISGNKLSGDFSR-----AIST 245
Query: 460 FSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLT 518
+ L L L++S N GP+P P ++ YL ++ N T
Sbjct: 246 CTELKL-----------------------LNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282
Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLS 577
G+IP ++ + ++L LDLS N+ G +P + S S+ +N F G +P T L
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLK 341
Query: 578 GRSLMMIDLSDNLLQGRIPRSLVNCS-SLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
R L ++DLS N G +P SL N S SL LDL +N SG
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----------------- 384
Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIY 696
L + + P L+ + L NN FTGK+P C + + Y+ G I
Sbjct: 385 --LPNLCQNPKN-----TLQELYLQNNGFTGKIPPTLSNCSELVSL--HLSFNYLSGTI- 434
Query: 697 PFALVSYAALGIYDYSLTM--SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKG 754
P +L S + L L M Q + Y K L +IL N GEIP+ ++N
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT---LETLILDFNDLTGEIPSGLSNCTN 491
Query: 755 LQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
L +SL+NN L G I +G L L L LSNN FSG IP +L D L + +++ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 815 GPIPQG 820
G IP
Sbjct: 552 GTIPAA 557
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 191/446 (42%), Gaps = 56/446 (12%)
Query: 113 LEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQIPSE-ILELSNLVSLDLSHNS 171
L LDL+ N+F +PP F G++P + +L++ L LDLS N
Sbjct: 296 LTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 172 YYNLIELKEPNLGNLVKKLTNLKE----LALGGVTISSPI-PHXXXX-XXXXXXXXXXGC 225
+ G L + LTNL L L S PI P+
Sbjct: 355 FS----------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN 285
G+IP L N ++L+ L LSFN L G +P+S+G+L L+ L + N L GE+P +
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
+ +LE L L N G+ P + N T L W+SL++N +GE+P G L +L L +S
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL----FT 401
FS IP+ L + L +L+ + N F+G I MF + K + + +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 402 KAIFNTSQKFNFVGLRSCNLNEF------------------PNFLKNQHYLEVLDLSCNK 443
K F G+RS LN P F N + LD+S N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNM 643
Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
+ G +PK + SM LNL HN + G + R + LDLS N L G +
Sbjct: 644 LSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLN--ILDLSSNKLDGRI--- 696
Query: 504 PPQTKHYL-------VSNNSLTGKIP 522
PQ L +SNN+L+G IP
Sbjct: 697 -PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 82 ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXX 141
+N G ++ LD+S + L G+I G + +L L+L N I IP E+
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHND-ISGSIPDEVGDLRGLNIL 685
Query: 142 XXXXAGFFGQIPSEILELSNLVSLDLSHN 170
G+IP + L+ L +DLS+N
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 198/695 (28%), Positives = 295/695 (42%), Gaps = 117/695 (16%)
Query: 227 LRGRIPSL--LGNLTKLMYLDLSFNNLLGELPTSIGN---LDCLKRLDISWNELSGELPA 281
L G + +L LG+ + L +L++S N L + P + L+ L+ LD+S N +SG
Sbjct: 109 LSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGA--N 164
Query: 282 SIG-----NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336
+G L+ L +S N+ G + L +L ++SN+FS +P G+ +
Sbjct: 165 VVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSA 221
Query: 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR 396
L+ LDIS K S ++ +LK L S N F GPI + K L++LSL+ N+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENK 277
Query: 397 LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ-HYLEVLDLSCNKIHGKVPKWLIEP 455
F G E P+FL L LDLS N +G VP +
Sbjct: 278 ----------------FTG-------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 456 -----------------------SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDG--FTLD 490
M+ L+LS N G + N TLD
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLD 371
Query: 491 LSYNYLQGPL-----PVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545
LS N GP+ P + + NN TGKIP + N S L L LS+N LSG
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGT 430
Query: 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605
+P L + S L L L N G IPQ + ++L + L N L G IP L NC++L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
++ L NN+++G P W+G L L +L L +N G I C L +DL+ N F
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 547
Query: 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725
G +P+ F+ + + RY+ + A + ++ S + +S
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 726 KVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785
N ++S + G + N + L ++ N L G+I +G++ L L+L
Sbjct: 608 NPCN------ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 786 NNKFSGQIPQQLVDLTFLEFFNVSNNNLT------------------------GPIPQGN 821
+N SG IP ++ DL L ++S+N L GPIP+
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 822 QFPTFDKTSFNGNLGLCGKPLPKECENDEAPTNED 856
QF TF F N GLCG PLP+ C+ P+N D
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 751
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 218/454 (48%), Gaps = 42/454 (9%)
Query: 224 GCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPT-SIGNLDCLKRLDISWNELSGELPAS 282
G G +P G+ + L L LS NN GELP ++ + LK LD+S+NE SGELP S
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 283 IGNL-ASLEQLELSLNRFRGKT-PHSMGN-FTRLYWLSLASNDFSGELPASFGNLRSLEG 339
+ NL ASL L+LS N F G P+ N L L L +N F+G++P + N L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 340 LDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
L +S S IPSSL +L++L+ L+ N G I ++ V K LE L L N L+
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLT- 476
Query: 400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQN 459
E P+ L N L + LS N++ G++PKW+ ++N
Sbjct: 477 ----------------------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LEN 512
Query: 460 FSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTG 519
+ L LS+N G + R+ LDL+ N G +P + + +N + G
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSL--IWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAG 569
Query: 520 KIPFWICNSSNSLEILDLSYNNL---SGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
K +I N E NL G+ + L+ S + ++ + G TF
Sbjct: 570 KRYVYIKNDGMKKECH--GAGNLLEFQGIRSEQLNRLSTR-NPCNITSRVYGGHTSPTFD 626
Query: 577 SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
+ S+M +D+S N+L G IP+ + + L L+LG+N ISG+ P +G LR LN+L L S
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
NKL G I P L IDLSNN +G +P
Sbjct: 687 NKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 165/546 (30%), Positives = 239/546 (43%), Gaps = 100/546 (18%)
Query: 287 ASLEQLELSLNRFRG--KTPHSMGNFTRLYWLSLASN--DFSGELPASFGNLRSLEGLDI 342
ASL L+LS N G T S+G+ + L +L+++SN DF G++ L SLE LD+
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 343 SECKFSSQ--IPSSLRN-LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399
S S + L + +LK L S N SG +D+ + +LE L +SSN
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNN--- 208
Query: 400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQN 459
F+ I FL + L+ LD+S NK+ G + ++
Sbjct: 209 FSTGI---------------------PFLGDCSALQHLDISGNKLSGDFSR-----AIST 242
Query: 460 FSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL-VSNNSLT 518
+ L L L++S N GP+P P ++ YL ++ N T
Sbjct: 243 CTELKL-----------------------LNISSNQFVGPIPPLPLKSLQYLSLAENKFT 279
Query: 519 GKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLS 577
G+IP ++ + ++L LDLS N+ G +P + S S+ +N F G +P T L
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLK 338
Query: 578 GRSLMMIDLSDNLLQGRIPRSLVNCS-SLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636
R L ++DLS N G +P SL N S SL LDL +N SG
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----------------- 381
Query: 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIY 696
L + + P L+ + L NN FTGK+P C + + Y+ G I
Sbjct: 382 --LPNLCQNPKN-----TLQELYLQNNGFTGKIPPTLSNCSELVSL--HLSFNYLSGTI- 431
Query: 697 PFALVSYAALGIYDYSLTM--SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKG 754
P +L S + L L M Q + Y K L +IL N GEIP+ ++N
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT---LETLILDFNDLTGEIPSGLSNCTN 488
Query: 755 LQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
L +SL+NN L G I +G L L L LSNN FSG IP +L D L + +++ N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 815 GPIPQG 820
G IP
Sbjct: 549 GTIPAA 554
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 191/446 (42%), Gaps = 56/446 (12%)
Query: 113 LEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQIPSE-ILELSNLVSLDLSHNS 171
L LDL+ N+F +PP F G++P + +L++ L LDLS N
Sbjct: 293 LTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 172 YYNLIELKEPNLGNLVKKLTNLKE----LALGGVTISSPI-PHXXXX-XXXXXXXXXXGC 225
+ G L + LTNL L L S PI P+
Sbjct: 352 FS----------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN 285
G+IP L N ++L+ L LSFN L G +P+S+G+L L+ L + N L GE+P +
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345
+ +LE L L N G+ P + N T L W+SL++N +GE+P G L +L L +S
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL----FT 401
FS IP+ L + L +L+ + N F+G I MF + K + + +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 402 KAIFNTSQKFNFVGLRSCNLNEF------------------PNFLKNQHYLEVLDLSCNK 443
K F G+RS LN P F N + LD+S N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNM 640
Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
+ G +PK + SM LNL HN + G + R + LDLS N L G +
Sbjct: 641 LSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLN--ILDLSSNKLDGRI--- 693
Query: 504 PPQTKHYL-------VSNNSLTGKIP 522
PQ L +SNN+L+G IP
Sbjct: 694 -PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 82 ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXX 141
+N G ++ LD+S + L G+I G + +L L+L N I IP E+
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHND-ISGSIPDEVGDLRGLNIL 682
Query: 142 XXXXAGFFGQIPSEILELSNLVSLDLSHN 170
G+IP + L+ L +DLS+N
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNT 648
N L G IP ++ + L +L + + +SG P +L ++ L L N L G + P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPS 144
Query: 649 GCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGI 708
P L I NR +G +P Y + S R + G I P ++A L
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPP----TFANLN- 198
Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768
L V LS N +G+ + K Q + LA NSL
Sbjct: 199 ----------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AF 235
Query: 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
L +G L LDL NN+ G +PQ L L FL NVS NNL G IPQG FD
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 829 TSFNGNLGLCGKPLP 843
+++ N LCG PLP
Sbjct: 296 SAYANNKCLCGSPLP 310
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 7/223 (3%)
Query: 231 IPSLLGNLTKLMYLDLS-FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289
IPS L NL L +L + NNL+G +P +I L L L I+ +SG +P + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 290 EQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSL-EGLDISECKFS 348
L+ S N G P S+ + L ++ N SG +P S+G+ L + IS + +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 349 SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS 408
+IP + NL L F++ S N G D + + K+ + + L+ N L+ F S
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLS 243
Query: 409 QKFNFVGLRSCNL-NEFPNFLKNQHYLEVLDLSCNKIHGKVPK 450
+ N + LR+ + P L +L L++S N + G++P+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 132/320 (41%), Gaps = 33/320 (10%)
Query: 25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKT-ASWKPEEANIDCC--LWDGVECN 81
LC+ ++ ALLQ K+ L +P T +SW P DCC W GV C+
Sbjct: 2 LCNPQDKQALLQIKKDLG--------------NPTTLSSWLPTT---DCCNRTWLGVLCD 44
Query: 82 ENTG--HVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXX 139
+T V LDLS L S L L +L +L + + IPP I
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 140 XXXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALG 199
G IP + ++ LV+LD S+N+ + + L NL +
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-------ISSLPNLVGITFD 157
Query: 200 GVTISSPIPHXXXXXXXXXXXXXXGC-ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS 258
G IS IP L G+IP NL L ++DLS N L G+
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216
Query: 259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
G+ +++ ++ N L+ +L +G +L L+L NR G P + L+ L++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 319 ASNDFSGELPASFGNLRSLE 338
+ N+ GE+P GNL+ +
Sbjct: 276 SFNNLCGEIPQG-GNLQRFD 294
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 103/255 (40%), Gaps = 44/255 (17%)
Query: 351 IPSSLRNLAQLKFLEFSH-NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ 409
IPSSL NL L FL NN GPI + L +L ++ +S
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIP--PAIAKLTQLHYLYITHTNVS----------- 114
Query: 410 KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469
P+FL L LD S N + G +P + S+ N + N
Sbjct: 115 ------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNR 160
Query: 470 LIGFYQHPMFFPRNYDGFT-----LDLSYNYLQGPLPVPPPQTKHYLV--SNNSLTGKIP 522
+ G P +Y F+ + +S N L G +P V S N L G
Sbjct: 161 ISGA------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 523 FWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLM 582
+ N+ +I L+ N+L+ L + S +L+ LDL++N+ G++PQ + L
Sbjct: 215 VLFGSDKNTQKI-HLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 583 MIDLSDNLLQGRIPR 597
+++S N L G IP+
Sbjct: 272 SLNVSFNNLCGEIPQ 286
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLN 297
T L YLDLSFN ++ +G L+ L+ LD + L S+ +L +L L++S
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLR 356
R + L L +A N F LP F LR+L LD+S+C+ P++
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 357 NLAQLKFLEFSHNNFSGPIDLDMF 380
+L+ L+ L SHNNF LD F
Sbjct: 492 SLSSLQVLNMSHNNF---FSLDTF 512
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 124/489 (25%), Positives = 197/489 (40%), Gaps = 81/489 (16%)
Query: 259 IGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRG------KTPHSM---- 307
IG+L LK L+++ N + S +LP NL +LE L+LS N+ + + H M
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 308 ---------------GNF--TRLYWLSLASN-DFSGELPASFGNLRSLEGLDISECKFSS 349
G F RL+ L+L +N D + L LE + +F +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 350 Q------IPSSLRNLAQLKFLEFSHNNFSGPID--LDMF--LVNFKHLEHLSLSSNRLSL 399
+ S+L L L EF +D +D+F L N +S++ R+
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 400 FTKAIFNTSQKFNF----VGLRSCNLNEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWLIE 454
F+ +NF + L +C +FP LK+ L+ L + NK G +
Sbjct: 300 FS---------YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFSEVDL 346
Query: 455 PSMQNFSYLNLSHNFL--IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP-----PQT 507
PS++ +L+LS N L G F + LDLS+N G + + Q
Sbjct: 347 PSLE---FLDLSRNGLSFKGCCSQSDFGTTSLK--YLDLSFN---GVITMSSNFLGLEQL 398
Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
+H +++L F + S +L LD+S+ + + S L +L + N F
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSF 457
Query: 568 CGS-IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSWLG 624
+ +P F R+L +DLS L+ P + + SSL+ L++ +N TFP
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YK 515
Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
L L VL N H M + FP L ++L+ N F + F W Q
Sbjct: 516 CLNSLQVLDYSLN--HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573
Query: 684 NTSELRYME 692
E+ ME
Sbjct: 574 LLVEVERME 582
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 13/216 (6%)
Query: 531 SLEILDLSYNNLS--GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS- 587
SLE LDLS N LS G Q D + L LDL N ++ FL L +D
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647
NL Q ++ +L +LD+ + F L L VL + N P+
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PD 464
Query: 648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALG 707
L +DLS + P+ F +++QV+N S + +P+ ++ +L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQ 521
Query: 708 IYDYSL--TMSNKGQMMSYDKVPNFLTGVILSSNRF 741
+ DYSL M++K Q + + P+ L + L+ N F
Sbjct: 522 VLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQNDF 555
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 15 MELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +H N L + N +LEHL LSSN++
Sbjct: 129 LNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 154 SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXX 213
S L L NL+ LD+SH + L++L+ L + G +
Sbjct: 415 SVFLSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNSFQENF------ 461
Query: 214 XXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN 273
+P + L L +LDLS L PT+ +L L+ L++S N
Sbjct: 462 -----------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF-TRLYWLSLASNDFS 324
L SL+ L+ SLN + +F + L +L+L NDF+
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 359 AQL 361
Q+
Sbjct: 173 HQM 175
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 77/202 (38%), Gaps = 19/202 (9%)
Query: 617 GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQC 676
G FP+ L+ L L SNK E + P L +DLS N + F+
Sbjct: 317 GQFPTL--KLKSLKRLTFTSNKGGNAFSEVD----LPSLEFLDLSRNGLS-------FKG 363
Query: 677 WNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS---LTMSNKGQMMSYDKVPNFLTG 733
+ T+ L+Y++ +S LG+ SN QM + +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 734 VILSSNRFDGEIP-TSIAN-LKGLQVLSLANNSLHGHIL-SCLGNLTGLESLDLSNNKFS 790
+ L + + I N L L+VL +A NS + L L L LDLS +
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 791 GQIPQQLVDLTFLEFFNVSNNN 812
P L+ L+ N+S+NN
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNN 505
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLN 297
T L YLDLSFN ++ +G L+ L+ LD + L S+ +L +L L++S
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLR 356
R + L L +A N F LP F LR+L LD+S+C+ P++
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 357 NLAQLKFLEFSHNNFSGPIDLDMF 380
+L+ L+ L SHNNF LD F
Sbjct: 197 SLSSLQVLNMSHNNF---FSLDTF 217
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 126/325 (38%), Gaps = 67/325 (20%)
Query: 264 CLKRLDISWNEL----SGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWLSL 318
C R S E+ G G +S +LEL N+ + PH + T+L LSL
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSL 59
Query: 319 ASN--DFSGELPASFGNLRSLEGLDISECKFSSQIP--SSLRNLAQLKFLEFSHNNFSGP 374
+SN F G S SL+ LD+S F+ I S+ L QL+ L+F H+N
Sbjct: 60 SSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQM 116
Query: 375 IDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE--FPNFLKNQH 432
+ +FL + ++L +L +S + IFN + + + E P+
Sbjct: 117 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 433 YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLS 492
L LDLS ++ P S+ + LN+SHN + F+LD
Sbjct: 176 NLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHN----------------NFFSLD-- 215
Query: 493 YNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552
P+ NS L++LD S N++ Q L +
Sbjct: 216 ---------------------------TFPYKCLNS---LQVLDYSLNHIMTSKKQELQH 245
Query: 553 FSDHLSILDLQHNKF-CGSIPQTFL 576
F L+ L+L N F C Q+FL
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQSFL 270
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290
+P + L L +LDLS L PT+ +L L+ L++S N L SL+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 291 QLELSLNRFRGKTPHSMGNF-TRLYWLSLASNDFS 324
L+ SLN + +F + L +L+L NDF+
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 17/213 (7%)
Query: 489 LDLSYNYLQGPLPVPP-----PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS 543
LDLS+N G + + Q +H +++L F + S +L LD+S+ +
Sbjct: 83 LDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 544 GLLPQCLDNFSDHLSILDLQHNKFCGS-IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNC 602
+ S L +L + N F + +P F R+L +DLS L+ P + +
Sbjct: 140 VAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 603 SSLKFLDLGNNQISG--TFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIID 659
SSL+ L++ +N TFP L L VL N H M + FP L ++
Sbjct: 199 SSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLN--HIMTSKKQELQHFPSSLAFLN 254
Query: 660 LSNNRFTGKLPSKYFQCWNAMQVVNTSELRYME 692
L+ N F + F W Q E+ ME
Sbjct: 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 287
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 9/154 (5%)
Query: 154 SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP-IPHXXX 212
S L L NL+ LD+SH + L++L+ L + G + +P
Sbjct: 120 SVFLSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 213 XXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISW 272
C+L P+ +L+ L L++S NN L+ L+ LD S
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 273 NELSGELPASIGNL-ASLEQLELSLNRFRGKTPH 305
N + + + +SL L L+ N F H
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 122/308 (39%), Gaps = 42/308 (13%)
Query: 82 ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW-LDLAFNYFICSEIPPEIIXXXXXXX 140
N G++ K D S L+G N + F+L +L++ LD + F C
Sbjct: 262 RNEGNLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC--------------- 304
Query: 141 XXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL-VKKLTNLKELAL- 198
F + I + D S+N + +EL G KL +LK L
Sbjct: 305 --LTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357
Query: 199 ---GGVTISS-PIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254
GG S +P GC + ++ L YLDLSFN ++
Sbjct: 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-----SLKYLDLSFNGVITM 412
Query: 255 LPTSIGNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLNRFRGKTPHSMGNFTRL 313
+G L+ L+ LD + L S+ +L +L L++S R + L
Sbjct: 413 SSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 314 YWLSLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
L +A N F LP F LR+L LD+S+C+ P++ +L+ L+ L SHNNF
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF- 530
Query: 373 GPIDLDMF 380
LD F
Sbjct: 531 --FSLDTF 536
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 195/491 (39%), Gaps = 85/491 (17%)
Query: 259 IGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRG------KTPHSM---- 307
IG+L LK L+++ N + S +LP NL +LE L+LS N+ + + H M
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 308 ---------------GNFT--RLYWLSLASNDFSGELPASFGNLRSLEGLDISEC----- 345
G F RL+ L+L +N L ++ L GL++
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN--FDSLNVMKTCIQGLAGLEVHRLVLGEF 261
Query: 346 -------KFSSQIPSSLRNLAQLKF-LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
KF L NL +F L + G IDL L N +S++ R+
Sbjct: 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV 321
Query: 398 SLFTKAIFNTSQKFNF----VGLRSCNLNEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWL 452
F+ +NF + L +C +FP LK+ L+ L + NK G +
Sbjct: 322 KDFS---------YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFSEV 368
Query: 453 IEPSMQNFSYLNLSHNFL--IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP-----P 505
PS++ +L+LS N L G F + LDLS+N G + +
Sbjct: 369 DLPSLE---FLDLSRNGLSFKGCCSQSDFGTISLK--YLDLSFN---GVITMSSNFLGLE 420
Query: 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565
Q +H +++L F + S +L LD+S+ + + S L +L + N
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGN 479
Query: 566 KFCGS-IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSW 622
F + +P F R+L +DLS L+ P + + SSL+ L++ +N TFP
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-- 537
Query: 623 LGTLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681
L L VL N H M + FP L ++L+ N F + F W Q
Sbjct: 538 YKCLNSLQVLDYSLN--HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595
Query: 682 VVNTSELRYME 692
E+ ME
Sbjct: 596 RQLLVEVERME 606
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 39 MELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 92
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +H N L + N +LEHL LSSN++
Sbjct: 153 LNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 89/239 (37%), Gaps = 38/239 (15%)
Query: 90 LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSE---IPPEIIXXXXXXXXXXXXA 146
LDLS + L S F + L++LDL+FN I + E +
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435
Query: 147 GFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP 206
F S L L NL+ LD+SH + L++L+ L + G +
Sbjct: 436 SEF----SVFLSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 207 IPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266
+P + L L +LDLS L PT+ +L L+
Sbjct: 485 F-----------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNF-TRLYWLSLASNDFS 324
L++S N L SL+ L+ SLN + +F + L +L+L NDF+
Sbjct: 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Query: 359 AQL 361
Q+
Sbjct: 197 HQM 199
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 147/376 (39%), Gaps = 97/376 (25%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
L+ LD++ LS ELP+ + L++L++L LS N+F S NF L LS+ N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
EL L NL L+ L+ SH++ ++ L N
Sbjct: 339 LELGT-----------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 385 KHLEHLSLSSNR-LSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNK 443
HL+ L+LS N LSL T+A Q LE+LDL+ +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQ------------------------LELLDLAFTR 411
Query: 444 IHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVP 503
+ K + + ++ LNLSH+ LD+S L LP
Sbjct: 412 LKVKDAQSPFQ-NLHLLKVLNLSHSL-------------------LDISSEQLFDGLPA- 450
Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQ 563
+H + N P +NSL+ L G L + +F D LS +D Q
Sbjct: 451 ---LQHLNLQGN----HFPKGNIQKTNSLQTL--------GRLEILVLSFCD-LSSID-Q 493
Query: 564 HNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
H F S + + +DLS N L +L + + +L+L +N IS PS L
Sbjct: 494 H---------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
Query: 624 GTLRELNVLILKSNKL 639
L + + L+ N L
Sbjct: 544 PILSQQRTINLRQNPL 559
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 21/281 (7%)
Query: 146 AGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKE---PNLGNLVKKLTNLKELALGGVT 202
A ++PS ++ LS L L LS N + NL ++ P+L +L K N K L LG
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK-GNTKRLELGTGC 345
Query: 203 ISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNL 262
+ + C L+ R NL+ L L+LS+N L +
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLR------NLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 263 DCLKRLDISWNELS-GELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN 321
L+ LD+++ L + + NL L+ L LS + + L L+L N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 322 DF-SGELPA--SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLD 378
F G + S L LE L +S C SS + +L + ++ SHN +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS---- 515
Query: 379 MFLVNFKHLE--HLSLSSNRLSLFTKAIFNTSQKFNFVGLR 417
+ HL+ +L+L+SN +S+ ++ + + LR
Sbjct: 516 -SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 166/414 (40%), Gaps = 74/414 (17%)
Query: 421 LNEFPNFLKNQHYLEVLDLSCN---KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHP 477
LNE P L N E L+ S N I LI N ++L+L+ + ++ H
Sbjct: 24 LNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLI-----NLTFLDLTRCQI--YWIHE 74
Query: 478 MFFPRNYDGFTLDLSYNYL--QGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEIL 535
F + TL L+ N L + P+ +L + I F ++ +LE L
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134
Query: 536 DLSYNNLSGL-LPQCLDNFSDHLSILDLQHNK--FCGSIPQTFLSGRSLMMIDLSDNLLQ 592
L N++S + LP+ ++ L +LD Q+N + + L + + ++L+ N +
Sbjct: 135 YLGSNHISSIKLPKGFP--TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 593 GRIPRSLVNCSSLKFLDLGNNQ---------ISGTFPS-WLGTLRELNVLILKSNKLHGM 642
G P + + + + L+ G Q + T S WLGT +++ +
Sbjct: 193 GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS------- 244
Query: 643 IREPNTGCGFPELRI--IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFAL 700
P G E+ + I+L + F + S F C++ +Q ++ + E P L
Sbjct: 245 ---PAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSE---LPSGL 297
Query: 701 VSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSL 760
V + L ++LS+N+F+ S +N L LS+
Sbjct: 298 VGLSTLK-------------------------KLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 761 ANNSLHGHI-LSCLGNLTGLESLDLSNNKF--SGQIPQQLVDLTFLEFFNVSNN 811
N+ + CL NL L LDLS++ S QL +L+ L+ N+S N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 24/289 (8%)
Query: 92 LSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQ 151
L+++ +G + S L + DL+ + F C E+ A
Sbjct: 242 LTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQEL----------DLTAAHLNG 291
Query: 152 IPSEILELSNLVSLDLSHNSYYNLIELKE---PNLGNLVKKLTNLKELALGGVTISSPIP 208
+PS I +++L L L+ NS+ L ++ P+L +L K N+++L LG +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIK-GNMRKLDLGTRCLEKLEN 350
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
C L+ L NL L YL+LS+N LG + L+ L
Sbjct: 351 LQKLDLSHSDIEASDCCNLQ------LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 269 DISWNELSGELPAS-IGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS-GE 326
D+++ L + P S NL L L LS H + L L+L N F G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 327 LPAS--FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373
+ + + SLE L +S C S + L + L+ SHN+ +G
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 117/295 (39%), Gaps = 73/295 (24%)
Query: 288 SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE--- 344
S+E + L +RF + + FTR+ L L + +G LP+ + SL+ L ++
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 345 ---CKFSSQIPSSLRNL-------------------AQLKFLEFSHNNFSGPIDLDMFLV 382
C+ ++ SLR+L L+ L+ SH++ ++ L
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCN 442
N +HL++L+LS N +GL E P LE+LD++
Sbjct: 373 NLRHLQYLNLSYNEP----------------LGLEDQAFKECPQ-------LELLDVAFT 409
Query: 443 KIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPV 502
+H K P + ++ LNLSH L QH + DL + LQG
Sbjct: 410 HLHVKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLL-------AGLQDLRHLNLQGNSFQ 461
Query: 503 PPPQTKHYLVSNNSLTGKIPFWICNSSNSLEI-------------LDLSYNNLSG 544
+K L+ + G + I +S N L I LDLS+N+L+G
Sbjct: 462 DGSISKTNLL---QMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 597 RSLVNCSSLKFLDLGNNQISGTFPS--WLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
R L +L+ LDL ++ I + L LR L L L N+ G+ + C P+
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKEC--PQ 400
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL------RYMEGMIYPFALVSYAALGI 708
L ++D++ K P FQ + ++V+N S +++ + ++
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 709 YDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768
D S++ +N QM+ ++ +ILSS + L+ + L L++NSL G
Sbjct: 461 QDGSISKTNLLQMVGSLEI------LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Query: 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813
+ L +L GL L++++N P L L+ N+S+N L
Sbjct: 515 SMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 134/328 (40%), Gaps = 57/328 (17%)
Query: 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-LPQCLDNF-SDHLSILD 561
P KH ++ ++ + F ++ +LE L L N++S + LP+ NF + +L +LD
Sbjct: 103 PKFLKHLFLTQTGISN-LEFIPVHNLENLESLHLGSNHISSINLPE---NFPTQNLKVLD 158
Query: 562 LQHNK--FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN--CSSLKF-------LDL 610
Q+N + L + + ++ + N ++G P + ++ SLKF +
Sbjct: 159 FQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIF 218
Query: 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
Q S WLGT + + L S G+ C + I+L +RF+ L
Sbjct: 219 KGLQNSTLQSLWLGTFEDTDDQYLTSATFEGL-------CDM-SVESINLQKHRFS-DLS 269
Query: 671 SKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNF 730
S F+C+ +Q + LT ++ + S + N
Sbjct: 270 SSTFRCFTRVQ----------------------------ELDLTAAHLNGLPSGIEGMNS 301
Query: 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSNNKF 789
L ++L++N FD + A+ L+ L + N + CL L L+ LDLS++
Sbjct: 302 LKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI 361
Query: 790 SGQ--IPQQLVDLTFLEFFNVSNNNLTG 815
QL +L L++ N+S N G
Sbjct: 362 EASDCCNLQLKNLRHLQYLNLSYNEPLG 389
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 583 MIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
++DL +N + N +L L L NN+IS P L +L L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 643 IRE-PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN--TSELR---YMEGMIY 696
+ P T ELR+ + N T K+ F N M VV T+ L+ G
Sbjct: 116 PEKMPKT---LQELRVHE---NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 697 PFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
+SY + I D ++T +G +P LT + L N+ S+ L L
Sbjct: 169 GMKKLSY--IRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
L L+ NS+ L N L L L+NNK ++P L D +++ + NNN++
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 159/406 (39%), Gaps = 85/406 (20%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
L+ LD++ L G LP+ + L L++L LS+N F S NF L L +
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR----- 330
Query: 325 GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNF 384
GN++ L L + L L L+ L+ SHN+ + L N
Sbjct: 331 -------GNVKKLH-LGVG----------CLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 385 KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKI 444
HL+ L+LS N +GL+S E P LE+LDL+ ++
Sbjct: 373 SHLQTLNLSHNEP----------------LGLQSQAFKECPQ-------LELLDLAFTRL 409
Query: 445 HGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP 504
H P+ + ++ LNL++ F LD S +L LPV
Sbjct: 410 HINAPQSPFQ-NLHFLQVLNLTYCF-------------------LDTSNQHLLAGLPV-- 447
Query: 505 PQTKHY-LVSNNSLTGKIPFW-ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562
+H L N+ G I + + SLE+L LS L + Q + +S +DL
Sbjct: 448 --LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK-MSHVDL 504
Query: 563 QHNKF-CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPS 621
HN C SI LS + ++L+ N + PR L S ++L +N +
Sbjct: 505 SHNSLTCDSIDS--LSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLD----- 557
Query: 622 WLGTLRELNVLILKSNKLHGMIREPNTGCGF-PELRIIDLSNNRFT 666
T ++ L LH + T C P LR + LS+ + +
Sbjct: 558 --CTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRGVKLSDVKLS 601
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKY 673
Q S T WLGT +++ + S L G+ E R D+S S
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS---------STT 270
Query: 674 FQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTG 733
FQC+ +Q + LT ++ + S K N L
Sbjct: 271 FQCFTQLQ----------------------------ELDLTATHLKGLPSGMKGLNLLKK 302
Query: 734 VILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI-LSCLGNLTGLESLDLSNNKFSGQ 792
++LS N FD S AN L L + N H+ + CL L L++LDLS+N
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 793 --IPQQLVDLTFLEFFNVSNNNLTGPIPQG 820
QL +L+ L+ N+S+N G Q
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 110/288 (38%), Gaps = 22/288 (7%)
Query: 91 DLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFG 150
D+S++ L+G S L + D++ F C E+ A
Sbjct: 239 DISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQEL----------DLTATHLK 288
Query: 151 QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLT--NLKELALGGVTISSPIP 208
+PS + L+ L L LS N + L ++ N +L N+K+L LG +
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
C L+ L NL+ L L+LS N LG + L+ L
Sbjct: 349 LQTLDLSHNDIEASDCCSLQ------LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 269 DISWNELSGELPAS-IGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS-GE 326
D+++ L P S NL L+ L L+ H + L L+L N F G
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Query: 327 LPAS--FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
+ + + SLE L +S C S + +L ++ ++ SHN+ +
Sbjct: 463 ITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 605 LKFLDLGNNQI--SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSN 662
L+ LDL +N I S L L L L L N+ G+ + C P+L ++DL+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC--PQLELLDLAF 406
Query: 663 NRFTGKLPSKYFQCWNAMQVVN 684
R P FQ + +QV+N
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLN 428
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 583 MIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
++DL +N + N +L L L NN+IS P L +L L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 643 IRE-PNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN--TSELR---YMEGMIY 696
+ P T ELR+ + N T K+ F N M VV T+ L+ G
Sbjct: 116 PEKMPKT---LQELRVHE---NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 697 PFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ 756
+SY + I D ++T +G +P LT + L N+ S+ L L
Sbjct: 169 GMKKLSY--IRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815
L L+ NS+ L N L L L+NNK ++P L D +++ + NNN++
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 112/299 (37%), Gaps = 29/299 (9%)
Query: 82 ENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEW-LDLAFNYFICSEIPPEIIXXXXXXX 140
N G++ K D S L+G N + F+L +L++ LD + F C
Sbjct: 238 RNEGNLEKFD--KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC--------------- 280
Query: 141 XXXXXAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL-VKKLTNLKELALG 199
F + I + D S+N + +EL G KL +LK L
Sbjct: 281 --LTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 200 GVTISSPIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI 259
+ G +G T L YLDLSFN ++ +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 260 GNLDCLKRLDISWNELSGELPASIG-NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
G L+ L+ LD + L S+ +L +L L++S R + L L +
Sbjct: 394 G-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 319 ASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
A N F LP F LR+L LD+S+C+ P++ +L+ L+ L + N D
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 177/431 (41%), Gaps = 74/431 (17%)
Query: 259 IGNLDCLKRLDISWNEL-SGELPASIGNLASLEQLELSLNRFRG------KTPHSM---- 307
IG+L LK L+++ N + S +LP NL +LE L+LS N+ + + H M
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 308 ---------------GNFT--RLYWLSLASN-DFSGELPASFGNLRSLEGLDISECKFSS 349
G F RL+ L+L +N D + L LE + +F +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 350 Q------IPSSLRNLAQLKFLEFSHNNFSGPID--LDMF--LVNFKHLEHLSLSSNRLSL 399
+ S+L L L EF +D +D+F L N +S++ R+
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 400 FTKAIFNTSQKFNF----VGLRSCNLNEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWLIE 454
F+ +NF + L +C +FP LK+ L+ L + NK G +
Sbjct: 300 FS---------YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFSEVDL 346
Query: 455 PSMQNFSYLNLSHNFL--IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP-----PQT 507
PS++ +L+LS N L G F + LDLS+N G + + Q
Sbjct: 347 PSLE---FLDLSRNGLSFKGCCSQSDFGTTSLK--YLDLSFN---GVITMSSNFLGLEQL 398
Query: 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567
+H +++L F + S +L LD+S+ + + S L +L + N F
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSF 457
Query: 568 CGS-IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTL 626
+ +P F R+L +DLS L+ P + + SSL+ L++ +NQ+ L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 627 RELNVLILKSN 637
L + L +N
Sbjct: 518 TSLQKIWLHTN 528
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 15 MELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +H N L + N +LEHL LSSN++
Sbjct: 129 LNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 359 AQL 361
Q+
Sbjct: 173 HQM 175
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSI-----LDLQHNKFCGSIPQTFLSGRSLMMIDL 586
LE LD ++NL + FS LS+ LD+ H + F SL ++ +
Sbjct: 398 LEHLDFQHSNLKQM-----SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 587 SDNLLQGR-IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642
+ N Q +P +L FLDL Q+ P+ +L L VL + SN+L +
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290
+P + L L +LDLS L PT+ +L L+ L+++ N+L L SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 291 QLELSLNRFRGKTPH 305
++ L N + P
Sbjct: 522 KIWLHTNPWDCSCPR 536
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASF-GNLRSL 337
+ S+ L LE N+ GK P + G+ +L L+LA N + E+PA+F G +
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379
Query: 338 EGLDISECKFSSQIPS--SLRNLAQLKFLEFSHNNFSGPID------LDMFLVNFKHLEH 389
E L + K IP+ ++++ ++FS+N G +D LD ++
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSS 437
Query: 390 LSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP---------NFLKNQHYLEVLDLS 440
++LS+N++S F K +F+T + + L L E P NF KN + L +DL
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENF-KNTYLLTSIDLR 496
Query: 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM 478
NK+ K+ ++ ++LS+N F P+
Sbjct: 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 31/284 (10%)
Query: 414 VGLRSC-NLNEFPNFLKNQHYLEVLDLSCNK-IHGKVPK--WLI---EPSMQNFSYLNLS 466
V + +C NL + P FLK ++++++CN+ I G+ K W P + + +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 467 HNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTK--HYLVSNNSLTGKIPFW 524
+N L F G L+ YN L+G LP + K ++ N +T +IP
Sbjct: 314 YNNLKTFPVETSLQKXKKLG-XLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPAN 371
Query: 525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHL-SILDLQHNKFCGSIPQTF-------L 576
C + +E L ++N L +P D S + S +D +N+ + F
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 577 SGRSLMMIDLSDNLLQGRIPRSLVNCSS-LKFLDLGNNQISGTFPSWLGTLRE------- 628
G ++ I+LS+N + + P+ L + S L ++L N ++ + L E
Sbjct: 431 KGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYL 489
Query: 629 LNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672
L + L+ NKL + + P L IDLS N F+ K P++
Sbjct: 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQ 531
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 121/521 (23%), Positives = 202/521 (38%), Gaps = 77/521 (14%)
Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEH 389
+F NL +L LD+ K P + + L L L S + D + N K L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 390 LSLSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLD--------LS 440
L LS N++ SL+ F K N L+S + + FL +H LE L L+
Sbjct: 128 LDLSKNQIRSLYLHPSFG---KLN--SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 441 CNKIHGKVP-KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499
N ++ +V W M F + L + G +G+T+D++ N+
Sbjct: 183 ANSLYSRVSVDW--GKCMNPFRNMVLEILDVSG------------NGWTVDITGNFSNA- 227
Query: 500 LPVPPPQTKHYLVSNNSLTGKIPF----------WICNSSNSLEILDLSYNNLSGLLPQC 549
+ Q +++++ + F + + +S+ LDLS+ + L +
Sbjct: 228 --ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Query: 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609
+ D L +L+L +NK + F +L +++LS NLL + + ++D
Sbjct: 286 FETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669
L N I+ L +L L L+ N L T P + I LS N+ L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-------TTIHFIPSIPDIFLSGNKLV-TL 396
Query: 670 PSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729
P +++ SE R +E + + L+ L I + N+ S D+ P+
Sbjct: 397 PKINL----TANLIHLSENR-LENLDILYFLLRVPHLQIL---ILNQNRFSSCSGDQTPS 448
Query: 730 ---FLTGVILSSNRFDGEIPTSIA-----NLKGLQVLSLANNSLHGHILSCLGNLTGLES 781
L + L N T + L LQVL L +N L+ +LT L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 782 LDLSNNKFS----GQIPQQLVDLTFLEFFNVSNNNLTGPIP 818
L L++N+ + +P LE ++S N L P P
Sbjct: 509 LSLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNP 543
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +SWN L S + L+ L+LS +
Sbjct: 16 MELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 69
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 70 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +HN L + N +LEHL LSSN++
Sbjct: 130 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 162
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFN 406
Q+ L S + P++ + FK L+ L+L +N+L IF+
Sbjct: 174 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFD 222
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +SWN L S + L+ L+LS +
Sbjct: 17 MELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 70
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +HN L + N +LEHL LSSN++
Sbjct: 131 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 163
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFN 406
Q+ L S + P++ + FK L+ L+L +N+L IF+
Sbjct: 175 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFD 223
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+ND + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA--GLLNGLENLD 175
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 149 FGQIPSEILELSNLVSL---DLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
FG +++ L+NL +L D+S N ++ +++ KLTNL+ L IS
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISD 208
Query: 206 PIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
P G +L+ L +LT L LDL+ N + P + L L
Sbjct: 209 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
L + N++S P + L +L LEL+ N+ +P + N L +L+L N+ S
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 318
Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
P S +L L+ L S K S SSL NL + +L HN S
Sbjct: 319 ISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQIS 361
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 111/280 (39%), Gaps = 61/280 (21%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 176 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 231 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 277
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
L LT L L+L+ N L P I NL L L
Sbjct: 278 --------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 309
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
+ +N +S P S +L L++L S N+ + S+ N T + WLS N S P
Sbjct: 310 TLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 365
Query: 329 ASFGNLRSLEGLDISEC---------KFSSQIPSSLRNLA 359
NL + L +++ K + IP++++N+
Sbjct: 366 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 106 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 143
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L L+ F N + +L + NL L+RLDIS N++S
Sbjct: 144 -------------ISALSGLTSLQQLN--FGNQVTDLK-PLANLTTLERLDISSNKVSD- 186
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 187 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 242 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 301
Query: 395 N 395
N
Sbjct: 302 N 302
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 87/190 (45%), Gaps = 41/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L+ F N + +L + NL L+RLDIS N++S + A + NL SL
Sbjct: 145 SALSGLTSLQQLN--FGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 201
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 202 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 253
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 254 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 307
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 308 YLTLYFNNIS 317
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 65 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 116
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN + I+ L GL L N L
Sbjct: 117 -----NQITDIDPLKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLK 166
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 167 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 223
Query: 832 NGN 834
NGN
Sbjct: 224 NGN 226
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 106 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 143
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L L+ S N + P + NL L+RLDIS N++S
Sbjct: 144 -------------ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 302
Query: 395 N 395
N
Sbjct: 303 N 303
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 86/190 (45%), Gaps = 40/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L+ S N + P + NL L+RLDIS N++S + A + NL SL
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 254
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 255 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 308
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 309 YLTLYFNNIS 318
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 110/280 (39%), Gaps = 61/280 (21%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 177 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 278
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
L LT L L+L+ N L P I NL L L
Sbjct: 279 --------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
+ +N +S P S +L L++L N+ + S+ N T + WLS N S P
Sbjct: 311 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 366
Query: 329 ASFGNLRSLEGLDISEC---------KFSSQIPSSLRNLA 359
NL + L +++ K + IP++++N+
Sbjct: 367 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+ L LD+S N ++ +++ KLTNL+ L IS P
Sbjct: 172 LTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
G +L+ L +LT L LDL+ N + P + L L L + N++S
Sbjct: 221 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
P + L +L LEL+ N+ +P + N L +L+L N+ S P S +L L+
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQ 330
Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
L K S SSL NL + +L HN S
Sbjct: 331 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 362
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 65 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 116
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN +I ++++ L LQ L+ ++N + L
Sbjct: 117 -----NQITDIDPLKNLTNLNRLELSSNTI-SDI-SALSGLTSLQQLNFSSNQVTD--LK 167
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 168 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 224
Query: 832 NGN 834
NGN
Sbjct: 225 NGN 227
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 46/242 (19%)
Query: 553 FSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612
+ ++L+ ++ +N+ P L+ L+ I +++N + P L N ++L L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672
NQI+ P L L LN L L SN I + + G L+ ++ S+N+ T P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT 732
L + L D S SNK +S L
Sbjct: 169 ---------------------------LANLTTLERLDIS---SNKVSDISVLAKLTNLE 198
Query: 733 GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQ 792
+I ++N+ P I L L LSL N L + L +LT L LDL+NN+ S
Sbjct: 199 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 254
Query: 793 IP 794
P
Sbjct: 255 AP 256
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP 352
+L+L+R G L L L+ N LP L +L LD+S + +S
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 353 SSLRNLAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
+LR L +L+ L N P L L LE LSL++N+L+ + N +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 NFVGLRSCNLNEFPNFLKNQHYL 434
+ + L+ +L P H L
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
L +DLS N LQ +P +L LD+ N+++ L L EL L LK N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 641 GMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
+ P P+L + L+NN+ T +LP+
Sbjct: 138 TL--PPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 111/280 (39%), Gaps = 61/280 (21%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 177 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 278
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
L LT L L+L+ N L P I NL L L
Sbjct: 279 --------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
+ +N +S P S +L L++L S N+ + S+ N T + WLS N S P
Sbjct: 311 TLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 366
Query: 329 ASFGNLRSLEGLDISEC---------KFSSQIPSSLRNLA 359
NL + L +++ K + IP++++N+
Sbjct: 367 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 106 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 143
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L L S N + P + NL L+RLDIS N++S
Sbjct: 144 -------------ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 302
Query: 395 N 395
N
Sbjct: 303 N 303
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 85/190 (44%), Gaps = 40/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L S N + P + NL L+RLDIS N++S + A + NL SL
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 254
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 255 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 308
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 309 YLTLYFNNIS 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 23/214 (10%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+ L LD+S N ++ +++ KLTNL+ L IS P
Sbjct: 172 LTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
G +L+ L +LT L LDL+ N + P + L L L + N++S
Sbjct: 221 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
P + L +L LEL+ N+ +P + N L +L+L N+ S P S +L L+
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQ 330
Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
L S K S SSL NL + +L HN S
Sbjct: 331 RLFFSNNKVSD--VSSLANLTNINWLSAGHNQIS 362
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 65 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 116
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN +I ++++ L LQ LS ++N + L
Sbjct: 117 -----NQITDIDPLKNLTNLNRLELSSNTI-SDI-SALSGLTSLQQLSFSSNQVTD--LK 167
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 168 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 224
Query: 832 NGN 834
NGN
Sbjct: 225 NGN 227
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
L N ++L L L NNQI+ P L L LN L L SN I + + G L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 156
Query: 659 DLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718
S+N+ T P L + L D S SNK
Sbjct: 157 SFSSNQVTDLKP-----------------------------LANLTTLERLDIS---SNK 184
Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTG 778
+S L +I ++N+ P I L L LSL N L + L +LT
Sbjct: 185 VSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 779 LESLDLSNNKFSGQIP 794
L LDL+NN+ S P
Sbjct: 241 LTDLDLANNQISNLAP 256
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP 352
+L+L+R G L L L+ N LP L +L LD+S + +S
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 353 SSLRNLAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
+LR L +L+ L N P L L LE LSL++N+L+ + N +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 NFVGLRSCNLNEFPNFLKNQHYL 434
+ + L+ +L P H L
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
L +DLS N LQ +P +L LD+ N+++ L L EL L LK N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 641 GMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
+ P P+L + L+NN+ T +LP+
Sbjct: 138 TL--PPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 106 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 143
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L L S N + P + NL L+RLDIS N++S
Sbjct: 144 -------------ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 188 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 302
Query: 395 N 395
N
Sbjct: 303 N 303
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L S N + P + NL L+RLDIS N++S + A + NL SL
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S P S L
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GL 260
Query: 335 RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLEHLSL 392
L L + + S+ P L L L LE + N PI N K+L +L+L
Sbjct: 261 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS------NLKNLTYLTL 312
Query: 393 SSNRLS 398
N +S
Sbjct: 313 YFNNIS 318
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 110/280 (39%), Gaps = 61/280 (21%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 177 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 278
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
L LT L L+L+ N L P I NL L L
Sbjct: 279 --------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
+ +N +S P S +L L++L N+ + S+ N T + WLS N S P
Sbjct: 311 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 366
Query: 329 ASFGNLRSLEGLDISEC---------KFSSQIPSSLRNLA 359
NL + L +++ K + IP++++N+
Sbjct: 367 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 65 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 116
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN +I ++++ L LQ LS ++N + L
Sbjct: 117 -----NQITDIDPLKNLTNLNRLELSSNTI-SDI-SALSGLTSLQQLSFSSNQVTD--LK 167
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 168 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 224
Query: 832 NGN 834
NGN
Sbjct: 225 NGN 227
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+ L LD+S N ++ +++ KLTNL+ L IS P
Sbjct: 172 LTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
G +L+ L +LT L LDL+ N + P + L L L + N++S
Sbjct: 221 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
P + L +L LEL+ N+ +P + N L +L+L N+ S P S +L L+
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQ 330
Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
L K S SSL NL + +L HN S
Sbjct: 331 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 362
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 599 LVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRII 658
L N ++L L L NNQI+ P L L LN L L SN I + + G L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 156
Query: 659 DLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718
S+N+ T P L + L D S SNK
Sbjct: 157 SFSSNQVTDLKP-----------------------------LANLTTLERLDIS---SNK 184
Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTG 778
+S L +I ++N+ P I L L LSL N L + L +LT
Sbjct: 185 VSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 779 LESLDLSNNKFSGQIP 794
L LDL+NN+ S P
Sbjct: 241 LTDLDLANNQISNLAP 256
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N+ + ELPA G L LE LD
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 176
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 684 NTSELRYMEGMIYPFALVS---YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
+T+ L E ++Y F+L + Y L + K Q+ D L + LS N+
Sbjct: 33 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV---DGTLPVLGTLDLSHNQ 89
Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
+P L L VL ++ N L L L L L+ L L N+ P L
Sbjct: 90 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 148
Query: 801 TFLEFFNVSNNNLTGPIPQG 820
LE +++NNNLT +P G
Sbjct: 149 PKLEKLSLANNNLTE-LPAG 167
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 136/589 (23%), Positives = 226/589 (38%), Gaps = 141/589 (23%)
Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS------- 320
+D +++ ++P+S N+ +LS N + +S NF+ L WL L+
Sbjct: 19 MDQKLSKVPDDIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 321 -----------------NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
N P SF L SLE L E K +S + L LK
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
L +H NF L + N +L H+ LS N + T ++ V L S +++
Sbjct: 133 LNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSL 190
Query: 424 FP-NFLKNQHYLEVLDLSCNKIHGKVPKW------LIEPSMQNFSYLNLSHNFLIGFYQH 476
P +F+++Q + + K+H + +++ +QN + L++ H ++G ++
Sbjct: 191 NPIDFIQDQAFQGI------KLHELTLRGNFNSSNIMKTCLQNLAGLHV-HRLILGEFKD 243
Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILD 536
RN + F + ++G V + + L N + I + C + +
Sbjct: 244 ----ERNLEIFEPSI----MEGLCDVTIDEFR--LTYTNDFSDDIVKFHC-------LAN 286
Query: 537 LSYNNLSGLLPQCLDNFSDH-----LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
+S +L+G+ + L++ H LSI+ Q +F ++ FL +L M
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-PTLDLPFLKSLTLTMN------- 338
Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGT---FPSWLGT--LRELNVLILKSNKLHGMIREP 646
+G I V SL +LDL N +S + S LGT LR L++ +G I
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL------SFNGAIIMS 392
Query: 647 NTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAAL 706
G EL+ +D FQ +V S +E ++Y
Sbjct: 393 ANFMGLEELQHLD--------------FQHSTLKRVTEFSAFLSLEKLLY---------- 428
Query: 707 GIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH 766
L +S + +D G+ L L L L +A NS
Sbjct: 429 ------LDISYTNTKIDFD-------GIFLG--------------LTSLNTLKMAGNSFK 461
Query: 767 GHILS-CLGNLTGLESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNL 813
+ LS N T L LDLS + QI + D L L+ N+S+NNL
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 509
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL--RSLEGLDI 342
+L L+ L L++N+ G L +L L+ N S S+ +L SL LD+
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 343 SECKFSSQI--PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLF 400
S F+ I ++ L +L+ L+F H+ + FL + + L +L +S +
Sbjct: 384 S---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKID 439
Query: 401 TKAIFNTSQKFNFVGLR--SCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ 458
IF N + + S N N N L LDLS K + W + ++
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS--KCQLEQISWGVFDTLH 497
Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQ---GPLPVPPPQTKHYLVSNN 515
LN+SHN L+ + + + Y TLD S+N ++ G L P + ++NN
Sbjct: 498 RLQLLNMSHNNLL--FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 516 SLT 518
S+
Sbjct: 556 SVA 558
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS--GELPASIGNLASLEQLELSLNR 298
L +LDLSFN + +G L+ L+ LD + L E A + L L L++S
Sbjct: 378 LRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTN 435
Query: 299 FRGKTPHSMGNFTRLYWLSLASNDFS-GELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
+ T L L +A N F L F N +L LD+S+C+
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 358 LAQLKFLEFSHNN 370
L +L+ L SHNN
Sbjct: 496 LHRLQLLNMSHNN 508
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N+ + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 684 NTSELRYMEGMIYPFALVS---YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
+T+ L E ++Y F+L + Y L + K Q+ D L + LS N+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ 88
Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
+P L L VL ++ N L L L L L+ L L N+ P L
Sbjct: 89 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 801 TFLEFFNVSNNNLTGPIPQG 820
LE +++NNNLT +P G
Sbjct: 148 PKLEKLSLANNNLTE-LPAG 166
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N+ + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 684 NTSELRYMEGMIYPFALVS---YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
+T+ L E ++Y F+L + Y L + K Q+ D L + LS N+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV---DGTLPVLGTLDLSHNQ 88
Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
+P L L VL ++ N L L L L L+ L L N+ P L
Sbjct: 89 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 801 TFLEFFNVSNNNLTGPIPQG 820
LE +++NNNLT +P G
Sbjct: 148 PKLEKLSLANNNLTE-LPAG 166
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N+ + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 684 NTSELRYMEGMIYPFALVS---YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
+T+ L E ++Y F+L + Y L + K Q+ D L + LS N+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ 88
Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
+P L L VL ++ N L L L L L+ L L N+ P L
Sbjct: 89 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 801 TFLEFFNVSNNNLTGPIPQG 820
LE +++NNNLT +P G
Sbjct: 148 PKLEKLSLANNNLTE-LPAG 166
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N+ + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 684 NTSELRYMEGMIYPFALVS---YAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740
+T+ L E ++Y F+L + Y L + K Q+ D L + LS N+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ 88
Query: 741 FDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800
+P L L VL ++ N L L L L L+ L L N+ P L
Sbjct: 89 LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 801 TFLEFFNVSNNNLTGPIPQG 820
LE +++NNNLT +P G
Sbjct: 148 PKLEKLSLANNNLTE-LPAG 166
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 136/589 (23%), Positives = 226/589 (38%), Gaps = 141/589 (23%)
Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS------- 320
+D +++ ++P+S N+ +LS N + +S NF+ L WL L+
Sbjct: 14 MDQKLSKVPDDIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 67
Query: 321 -----------------NDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
N P SF L SLE L E K +S + L LK
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 127
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE 423
L +H NF L + N +L H+ LS N + T ++ V L S +++
Sbjct: 128 LNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSL 185
Query: 424 FP-NFLKNQHYLEVLDLSCNKIHGKVPKW------LIEPSMQNFSYLNLSHNFLIGFYQH 476
P +F+++Q + + K+H + +++ +QN + L++ H ++G ++
Sbjct: 186 NPIDFIQDQAFQGI------KLHELTLRGNFNSSNIMKTCLQNLAGLHV-HRLILGEFKD 238
Query: 477 PMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILD 536
RN + F + ++G V + + L N + I + C + +
Sbjct: 239 ----ERNLEIFEPSI----MEGLCDVTIDEFR--LTYTNDFSDDIVKFHC-------LAN 281
Query: 537 LSYNNLSGLLPQCLDNFSDH-----LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
+S +L+G+ + L++ H LSI+ Q +F ++ FL +L M
Sbjct: 282 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-PTLDLPFLKSLTLTMN------- 333
Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGT---FPSWLGT--LRELNVLILKSNKLHGMIREP 646
+G I V SL +LDL N +S + S LGT LR L++ +G I
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL------SFNGAIIMS 387
Query: 647 NTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAAL 706
G EL+ +D FQ +V S +E ++Y
Sbjct: 388 ANFMGLEELQHLD--------------FQHSTLKRVTEFSAFLSLEKLLY---------- 423
Query: 707 GIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH 766
L +S + +D G+ L L L L +A NS
Sbjct: 424 ------LDISYTNTKIDFD-------GIFLG--------------LTSLNTLKMAGNSFK 456
Query: 767 GHILS-CLGNLTGLESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNL 813
+ LS N T L LDLS + QI + D L L+ N+S+NNL
Sbjct: 457 DNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 504
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL--RSLEGLDI 342
+L L+ L L++N+ G L +L L+ N S S+ +L SL LD+
Sbjct: 321 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 378
Query: 343 SECKFSSQI--PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLF 400
S F+ I ++ L +L+ L+F H+ + FL + + L +L +S +
Sbjct: 379 S---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKID 434
Query: 401 TKAIFNTSQKFNFVGL--RSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ 458
IF N + + S N N N L LDLS K + W + ++
Sbjct: 435 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS--KCQLEQISWGVFDTLH 492
Query: 459 NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQ---GPLPVPPPQTKHYLVSNN 515
LN+SHN L+ + + + Y TLD S+N ++ G L P + ++NN
Sbjct: 493 RLQLLNMSHNNLL--FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Query: 516 SLT 518
S+
Sbjct: 551 SVA 553
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS--GELPASIGNLASLEQLELSLNR 298
L +LDLSFN + +G L+ L+ LD + L E A + L L L++S
Sbjct: 373 LRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTN 430
Query: 299 FRGKTPHSMGNFTRLYWLSLASNDFS-GELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
+ T L L +A N F L F N +L LD+S+C+
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 358 LAQLKFLEFSHNN 370
L +L+ L SHNN
Sbjct: 491 LHRLQLLNMSHNN 503
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 94/230 (40%), Gaps = 28/230 (12%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 180 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 234
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 235 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 281
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
E I NL L YL L FNN+ P + +L L+RL
Sbjct: 282 LAGLTALTNLELNENQLEDISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 335
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
+ N++S +S+ NL ++ L N+ TP + N TR+ L L
Sbjct: 336 FFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 110 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 147
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L LSF N + +L + NL L+RLDIS N++S
Sbjct: 148 -------------ISALSGLTSLQQ--LSFGNQVTDLK-PLANLTTLERLDISSNKVSD- 190
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 191 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 245
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 246 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 305
Query: 395 N 395
N
Sbjct: 306 N 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 87/190 (45%), Gaps = 41/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L SF N + +L + NL L+RLDIS N++S + A + NL SL
Sbjct: 149 SALSGLTSLQQL--SFGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 205
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 206 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 257
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 258 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 311
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 312 YLTLYFNNIS 321
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 69 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 120
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN +I ++++ L LQ LS N L
Sbjct: 121 -----NQITDIDPLKNLTNLNRLELSSNTI-SDI-SALSGLTSLQQLSFGNQVTD---LK 170
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 171 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 227
Query: 832 NGN 834
NGN
Sbjct: 228 NGN 230
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%)
Query: 225 CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG 284
C L+ P L L L YL L N L + +L L L + N +S +
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE 344
L SL++L L NR PH+ + RL L L +N+ S + LR+L+ L +++
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP 352
+L+L+R G L L L+ N LP L +L LD+S + +S
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 353 SSLRNLAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
+LR L +L+ L N P L L LE LSL++N+L+ + N +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 NFVGLRSCNLNEFPNFLKNQHYL 434
+ + L+ +L P H L
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
L +DLS N LQ +P +L LD+ N+++ L L EL L LK N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 641 GMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
+ P P+L + L+NN+ T +LP+
Sbjct: 138 TL--PPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 236 GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295
G L L LDLS N L LP L L LD+S+N L+ ++ L L++L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
N + P + +L LSLA+N + ELPA G L LE LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP 352
+L+L+R G L L L+ N LP L +L LD+S + +S
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 353 SSLRNLAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKF 411
+LR L +L+ L N P L L LE LSL++N+L+ + N +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 NFVGLRSCNLNEFPNFLKNQHYL 434
+ + L+ +L P H L
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
L +DLS N LQ +P +L LD+ N+++ L L EL L LK N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 641 GMIREPNTGCGFPELRIIDLSNNRFTGKLPS 671
+ P P+L + L+NN+ T +LP+
Sbjct: 138 TL--PPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHI 769
D + SNKG + +P +T + L N+F +P ++N K L ++ L+NN +
Sbjct: 12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKT 829
N+T L +L LS N+ P+ L L ++ N+++ +P+G F+
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG----AFNDL 125
Query: 830 SFNGNLGLCGKPLPKEC 846
S +L + PL +C
Sbjct: 126 SALSHLAIGANPLYCDC 142
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRG 301
+YLD N +P + N L +D+S N +S S N+ L L LS NR R
Sbjct: 36 LYLD---GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 302 KTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDI 342
P + L LSL ND S +F +L +L L I
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
L+P+ L N+ HL+++DL +N+ Q+F + L+ + LS N L+ PR+ S
Sbjct: 45 LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103
Query: 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
L+ L L N IS L L+ L + +N L+
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+P + N L ++LS NR + S N T+L L L+ N P +F L+SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 339 GLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369
L + S + +L+ L L N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%)
Query: 225 CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG 284
C L+ P L L L YL L N L + +L L L + N +S +
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE 344
L SL++L L NR PH+ + RL L L +N+ S + LR+L+ L +++
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 70/182 (38%), Gaps = 19/182 (10%)
Query: 268 LDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327
LD+ N + + LE+LEL+ N P + N L L L SN
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 328 PASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE--------FSHNNFSGPIDLDM 379
F L +L LDISE K + ++L LK LE SH FSG
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG------ 150
Query: 380 FLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNF-LKNQHYLEVLD 438
LE L+L L+ + + LR N+N ++ K + L+VL+
Sbjct: 151 ----LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 439 LS 440
+S
Sbjct: 207 IS 208
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 8/212 (3%)
Query: 235 LGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294
L NLTKL D+S N ++ L +L LK L++ N+L + L SLEQL L
Sbjct: 103 LSNLTKL---DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Query: 295 SLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF-SSQIPS 353
++ + L L L + + SF L L+ L+IS + + P+
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 354 SLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNF 413
L L L L +H N + L + + +L L+LS N +S ++ + +
Sbjct: 220 CLYGL-NLTSLSITHCNLTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Query: 414 VGLRSCNLNEF-PNFLKNQHYLEVLDLSCNKI 444
+ L L P + +YL VL++S N++
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 32/287 (11%)
Query: 382 VNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLS 440
+F HLE L L+ N +S FN +GLRS L P L LD+S
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Query: 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN-YDGFTLDLSYNYLQGP 499
NKI + ++ + + N L + N L+ + H F N + TL+
Sbjct: 113 ENKI-VILLDYMFQ-DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLE--------- 160
Query: 500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSI 559
K L S IP + + L +L L + N++ + L +
Sbjct: 161 --------KCNLTS-------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKV 204
Query: 560 LDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTF 619
L++ H + ++ L G +L + ++ L ++ + L+FL+L N IS
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 620 PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666
S L L L + L +L + EP G LR++++S N+ T
Sbjct: 265 GSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 716 SNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL 773
N+ + ++ D+ +F L + L+ N P + NL L+ L L +N L L
Sbjct: 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100
Query: 774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT 814
L+ L LD+S NK + DL L+ V +N+L
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 117/309 (37%), Gaps = 22/309 (7%)
Query: 112 HLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGFFGQIPSEILE-LSNLVSLDLSHN 170
HLE L+L N I S + P + IP + LSNL LD+S N
Sbjct: 57 HLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 171 SYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXXXXXXXGCELRGR 230
L++ + + L NLK L +G + C L
Sbjct: 115 KIVILLDY-------MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS-WNELSGELPASIG--NLA 287
L +L L+ L L N+ S L LK L+IS W L P + NL
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 288 SLEQLELSLNRFRGKTPH-SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346
SL +L P+ ++ + L +L+L+ N S + L L+ + + +
Sbjct: 228 SLSITHCNLT----AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 347 FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKA--I 404
+ P + R L L+ L S N + ++ +F + +LE L L SN L+ + +
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFH-SVGNLETLILDSNPLACDCRLLWV 341
Query: 405 FNTSQKFNF 413
F + NF
Sbjct: 342 FRRRWRLNF 350
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 111 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 148
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L LSF N + +L + NL L+RLDIS N++S
Sbjct: 149 -------------ISALSGLTSLQQ--LSFGNQVTDLK-PLANLTTLERLDISSNKVSD- 191
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 246
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 247 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 306
Query: 395 N 395
N
Sbjct: 307 N 307
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 87/190 (45%), Gaps = 41/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L SF N + +L + NL L+RLDIS N++S + A + NL SL
Sbjct: 150 SALSGLTSLQQL--SFGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 207 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 258
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 312
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 313 YLTLYFNNIS 322
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 93/230 (40%), Gaps = 28/230 (12%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 181 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 235
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 236 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 282
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
E I NL L YL L FNN+ P + +L L+RL
Sbjct: 283 LAGLTALTNLELNENQLEDISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318
N++S +S+ NL ++ L N+ TP + N TR+ L L
Sbjct: 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 70 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 121
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN +I ++++ L LQ LS N L
Sbjct: 122 -----NQITDIDPLKNLTNLNRLELSSNTI-SDI-SALSGLTSLQQLSFGNQVTD---LK 171
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 172 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 228
Query: 832 NGN 834
NGN
Sbjct: 229 NGN 231
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 145/363 (39%), Gaps = 45/363 (12%)
Query: 315 WLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP------SSLRNLAQLKFLEFSH 368
++ L+ N + SF L+ L+ L + + Q P ++ R L+ L L+ +
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQ-----QTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 369 NNFSGPIDLDMFLVN-FKHLEHLSLSSNRL--SLFTKAIFNTSQKFNFVGLRSCNLNEF- 424
N F + L+ N +LE L+L+ L ++ + F + LR N+ +
Sbjct: 89 NQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 425 -PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN 483
+F N VLDL+ NK+ + L+ ++F+ L LS L ++ + + +
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 484 YDGF------TLDLSYNYLQGPLP------VPPPQTKHYLVSNNSLTGKIPFWICN---- 527
+ F TLDLS N + + + + + ++SN+ G F N
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDP 264
Query: 528 --------SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGR 579
++ ++ DLS + + LL +F+D L L L N+ F
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLT 323
Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
L+ ++LS N L R N L+ LDL N I L L L L +N+L
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 640 HGM 642
+
Sbjct: 384 KSV 386
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 238 LTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296
LT L+ L+LS N LG + + + NLD L+ LD+S+N + S L +L++L L
Sbjct: 322 LTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
N+ + T L + L +N + P
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
+K D+S +++ L + + LEQL L+ N ++ T L L+L+ N F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL 335
Query: 325 GELPAS-FGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
G + + F NL LE LD+S + S L LK L N D
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQG 593
+LDLS+NNLS L + +L L L HN + F+ +L +DLS N L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 594 RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM-IREPNTGCGF 652
+ +L+ L L NN I + + +L L L N++ + G
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 653 PELRIIDLSNNRFTGKLP 670
P+L ++DLS+N+ KLP
Sbjct: 163 PKLMLLDLSSNKL-KKLP 179
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 26/227 (11%)
Query: 149 FGQIPSEILELSNLVSL---DLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205
FG +++ L+NL +L D+S N ++ +++ KLTNL+ L IS
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISD 208
Query: 206 PIPHXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265
P G +L+ L +LT L LDL+ N + P + L L
Sbjct: 209 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG 325
L + N++S P + L +L LEL+ N+ +P + N L +L+L N+ S
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 318
Query: 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372
P S +L L+ L K S SSL NL + +L HN S
Sbjct: 319 ISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 361
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXXXXXXX 218
L+NL L L +N ++ +P +K LTNL L L TIS
Sbjct: 106 LTNLTGLTLFNNQITDI----DP-----LKNLTNLNRLELSSNTISD------------- 143
Query: 219 XXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGE 278
S L LT L L+ F N + +L + NL L+RLDIS N++S
Sbjct: 144 -------------ISALSGLTSLQQLN--FGNQVTDLK-PLANLTTLERLDISSNKVSD- 186
Query: 279 LPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338
+ + L +LE L + N+ TP +G T L LSL N + +L +L
Sbjct: 187 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFS---GPIDLDMFLVNFKHLEHLSLSS 394
LD++ + S+ P S L L +LK +N S G L +N LE +S S
Sbjct: 242 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 301
Query: 395 N 395
N
Sbjct: 302 N 302
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 110/280 (39%), Gaps = 61/280 (21%)
Query: 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIIXXXXXXXXXXXXAGF 148
+LD+S++ + S L KL +LE L +A N I P I+
Sbjct: 176 RLDISSNKVSDI----SVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208
G + S L+NL LDL++N NL L LT L EL LG IS+ P
Sbjct: 231 IGTLAS----LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNISP 277
Query: 209 HXXXXXXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268
L LT L L+L+ N L P I NL L L
Sbjct: 278 --------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 309
Query: 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP 328
+ +N +S P S +L L++L N+ + S+ N T + WLS N S P
Sbjct: 310 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 365
Query: 329 ASFGNLRSLEGLDISEC---------KFSSQIPSSLRNLA 359
NL + L +++ K + IP++++N+
Sbjct: 366 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 87/190 (45%), Gaps = 41/190 (21%)
Query: 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASL-- 289
S L LT L L+ F N + +L + NL L+RLDIS N++S + A + NL SL
Sbjct: 145 SALSGLTSLQQLN--FGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 201
Query: 290 --EQL-------------ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334
Q+ ELSLN + K ++ + T L L LA+N S NL
Sbjct: 202 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL 253
Query: 335 RSLEGL-DISECKF-SSQIP--SSLRNLAQLKFLEFSHNNFS--GPIDLDMFLVNFKHLE 388
L GL ++E K ++QI S L L L LE + N PI N K+L
Sbjct: 254 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS------NLKNLT 307
Query: 389 HLSLSSNRLS 398
+L+L N +S
Sbjct: 308 YLTLYFNNIS 317
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFA-LVSYAALGIYDYSL 713
L I+ SNN+ T P K N ++V+ I P A L + L +++
Sbjct: 65 LTQINFSNNQLTDITPLK-----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN--- 116
Query: 714 TMSNKGQMMSYDKVPNF--LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
Q+ D + N L + LSSN + I+ L GL L N L
Sbjct: 117 -----NQITDIDPLKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLK 166
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSF 831
L NLT LE LD+S+NK S L LT LE +NN ++ P G D+ S
Sbjct: 167 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSL 223
Query: 832 NGN 834
NGN
Sbjct: 224 NGN 226
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 15 MELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +HN L + N +LEHL LSSN++
Sbjct: 129 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFN 406
Q+ L S + P++ + FK L+ L+L +N+L IF+
Sbjct: 173 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFD 221
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 244 LDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKT 303
++L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 17 MELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 70
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKF 363
+ + + L L L N +F L SL+ L E +S + +L LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
L +HN L + N +LEHL LSSN++
Sbjct: 131 LNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 163
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFN 406
Q+ L S + P++ + FK L+ L+L +N+L IF+
Sbjct: 175 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFD 223
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPAS-IGNLASLEQLELSLNRF 299
L+ L+L+ N++ + L L+ LD+ NE+ +L L ++ ++ LS N++
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 300 RGKTPHSMG---NFTRLYW--LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSS 354
+ S + RL ++L + D S P+ F LR+L LD+S ++
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDL 499
Query: 355 LRNLAQLKFLEFSHNNFS---------GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
L L L+ L+F HNN + GP++ FL HL L+L SN L +F
Sbjct: 500 LEGLENLEILDFQHNNLARLWKRANPGGPVN---FLKGLSHLHILNLESNGLDEIPVGVF 556
Query: 406 NTSQKFNFVGLRSCNLNEF------PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQN 459
N L+S NL P +Q L L+L N I V K + P QN
Sbjct: 557 K-----NLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLI-TSVEKDVFGPPFQN 610
Query: 460 FSYLNLSHN 468
+ L++ N
Sbjct: 611 LNSLDMRFN 619
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 141/569 (24%), Positives = 205/569 (36%), Gaps = 93/569 (16%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
+ + L+L+ N L PT+ L LD +N +S P L L+ L L N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 299 FRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+ + T L L L SN F N ++L LD+S SS + L
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRS 418
L+ L + N ++ + L L LSSN L F+ F T K + L +
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 419 CNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKW-LIEPSMQNFSYLNLSHNFLIGFYQHP 477
LN H E L C W L S+QN S L++N L+ +
Sbjct: 205 AQLNP--------HLTEKL---C---------WELSNTSIQNLS---LANNQLLATSEST 241
Query: 478 MFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537
+ + LDLSYN L V N S + +P SL L L
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHD-------------VGNGSFS-YLP--------SLRYLSL 279
Query: 538 SYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ---------TFLSGRSLMMIDLSD 588
YNN+ L P+ S+ L L L+ S+ +F + L +++ D
Sbjct: 280 EYNNIQRLSPRSFYGLSN-LRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDD 338
Query: 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV-------LILKSNKLHG 641
N + + SLK+L L S TF S E V L L K H
Sbjct: 339 NNIPSTKSNTFTGLVSLKYLSL-----SKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI 393
Query: 642 MIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALV 701
T +LRI+DL N KL Q W ++ + L Y +
Sbjct: 394 SKIANGTFSWLGQLRILDLGLNEIEQKLSG---QEWRGLRNIFEIYLSYNK--------- 441
Query: 702 SYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLA 761
Y L ++L S + M+ + N V +S P+ L+ L +L L+
Sbjct: 442 -YLQLSTSSFALVPSLQRLMLRRVALKN----VDIS--------PSPFRPLRNLTILDLS 488
Query: 762 NNSLHGHILSCLGNLTGLESLDLSNNKFS 790
NN++ L L LE LD +N +
Sbjct: 489 NNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 137/350 (39%), Gaps = 74/350 (21%)
Query: 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNR 298
T L LDLS+NNL S L L+ L + +N + P S L++L L L
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK--- 304
Query: 299 FRGKTPHSMGNFTRLYWLSLAS----NDFSGELPASFGNLRSLEGLDISECKFSSQIPSS 354
R T S+ SLAS +DF SF L+ LE L++ + S ++
Sbjct: 305 -RAFTKQSV---------SLASHPNIDDF------SFQWLKYLEYLNMDDNNIPSTKSNT 348
Query: 355 LRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKH--LEHLSLSSNRLSLFTKAIFNTSQKFN 412
L LK+L S S + V+ H L L+L+ N +S F+
Sbjct: 349 FTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT------FS 402
Query: 413 FVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVP--KW-----LIEPSMQNFSYLNL 465
++G L +LDL N+I K+ +W + E + YL L
Sbjct: 403 WLG-----------------QLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQL 445
Query: 466 SHN--FLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPF 523
S + L+ Q M R +D+S P P P + L +N+ I
Sbjct: 446 STSSFALVPSLQRLML--RRVALKNVDIS------PSPFRPLRNLTILDLSNNNIANINE 497
Query: 524 WICNSSNSLEILDLSYNNLSGLLPQC--------LDNFSDHLSILDLQHN 565
+ +LEILD +NNL+ L + L S HL IL+L+ N
Sbjct: 498 DLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLS-HLHILNLESN 546
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 7/153 (4%)
Query: 245 DLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTP 304
+L+F + LP S NLD +S+N L S + L+ L+LS +
Sbjct: 17 ELNFYKIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 70
Query: 305 HSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
+ + + L L L N +F L SL+ L E +S + +L LK L
Sbjct: 71 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 365 EFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL 397
+HN L + N +LEHL LSSN++
Sbjct: 131 NVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKI 162
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRF 299
+L LDLS + + +L L L ++ N + + L+SL++L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 300 RGKTPHSMGNFTRLYWLSLASNDF-SGELPASFGNLRSLEGLDISECKFSSQIPSSLRNL 358
+G+ L L++A N S +LP F NL +LE LD+S K S + LR L
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
Query: 359 AQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFN 406
Q+ L S + P++ + FK L+ L+L +N+L IF+
Sbjct: 174 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFD 222
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 238 LTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASI-GNLASLEQLELS 295
LTKL L L+ +N L LP I L L+ L ++ N+L LP + L +L +L L
Sbjct: 60 LTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD 117
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSL 355
N+ + P + T+L +LSL N+ F L SL+ L + + +
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 356 RNLAQLKFLEFSHNNFS 372
L +LK L+ +N
Sbjct: 178 DKLTELKTLKLDNNQLK 194
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 654 ELRIIDLSNNRFTGKLPSKYFQCWNAMQVV--NTSELRYMEGMIYPFALVSYAALGIYDY 711
+ + +DL +N+ + LPSK F ++++ N ++L+ + I+ L + L + D
Sbjct: 38 DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK-ELKNLETLWVTDN 95
Query: 712 SLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771
L G +D++ N L + L N+ P +L L LSL N L
Sbjct: 96 KLQALPIG---VFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 772 CLGNLTGLESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
LT L+ L L NN+ ++P+ D LT L+ + NN L +P+G F + +K
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEG-AFDSLEK 206
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASIG 284
+L+ P + +LTKL YL L +N L LP + L LK L + N+L +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN 321
L L+ L+L N+ + + + +L L L N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 485 DGFTLDLSYNYLQGPLPVPPPQTKHYLVS------NNSLTGKIPFWICNSSNSLEILDLS 538
D LDL N L P + H L N++ +P I +LE L ++
Sbjct: 38 DTKKLDLQSNKLSSL----PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 539 YNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS 598
N L L D +L+ L L N+ P+ F S L + L N LQ +P+
Sbjct: 94 DNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKG 151
Query: 599 LVN-CSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640
+ + +SLK L L NNQ+ L EL L L +N+L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 40/214 (18%)
Query: 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLH----GMIREPNTGCGFPELRII 658
+ K LDL +N++S L +L +L L NKL G+ +E L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE------LKNLETL 90
Query: 659 DLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718
+++N+ LP F Q+VN +ELR + + +L Y
Sbjct: 91 WVTDNKLQA-LPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTY------- 137
Query: 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTG 778
+ Y+++ + GV FD L L+ L L NN L LT
Sbjct: 138 -LSLGYNELQSLPKGV------FD--------KLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 779 LESLDLSNNKFSGQIPQQLVD-LTFLEFFNVSNN 811
L++L L NN+ ++P+ D L L+ + N
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 160/399 (40%), Gaps = 55/399 (13%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
L LD+S+N L+ S L LE L N + HS+ + +L+L + F+
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FT 308
Query: 325 GE------LPA----SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
+ LP SF L+ LE L++ + + L LK+L S++ S
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 375 IDLDMFLVNFKH--LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQH 432
+ V+ H L L+L+ N++S S F+++G
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIE------SDAFSWLG----------------- 405
Query: 433 YLEVLDLSCNKIHGKVP--KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
+LEVLDL N+I ++ +W ++N + LS+N + ++ + L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 491 LSY--NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
N P P P + L +N+ I + LEILDL +NNL+ L
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 549 C--------LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
L S HL IL+L+ N F + F L +IDL N L +P S+
Sbjct: 523 ANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVF 580
Query: 601 NCS-SLKFLDLGNNQISGTFPSWLG-TLRELNVLILKSN 637
N SLK L+L N I+ G R L L ++ N
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
L LD+ +N +S L P+ L +L+LQHN+ +TF +L + L N +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGT 618
Q V +L LDL +N +S T
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 225 CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG 284
C L+ P L L L YL L NNL + +L L L + N + +
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPAS-FGNLRSLEGLDIS 343
L SL++L L N PH+ + RL L L +N+ S LPA LRSL+ L ++
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLN 232
Query: 344 E 344
+
Sbjct: 233 D 233
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 52/208 (25%), Positives = 79/208 (37%), Gaps = 33/208 (15%)
Query: 266 KRLDISW---NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASND 322
+ L I W N L+G A+ L LEQL+LS N L D
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA------------------QLRVVD 96
Query: 323 FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG-PIDLDMFL 381
P +F L L L + C P R LA L++L NN P D
Sbjct: 97 -----PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALP---DNTF 148
Query: 382 VNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLS 440
+ +L HL L NR+ + F + + L ++ P+ ++ L L L
Sbjct: 149 RDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
N + +P ++ P +++ YL L+ N
Sbjct: 209 ANNL-SMLPAEVLVP-LRSLQYLRLNDN 234
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
+P + L NR S + + L +L L +N+L G + LT LE LDLS+
Sbjct: 29 IPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSD 88
Query: 787 N 787
N
Sbjct: 89 N 89
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 8/228 (3%)
Query: 243 YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK 302
YL+L N++ + +L L+ L +S N + + L SL LEL NR
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 303 TPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI-PSSLRNLAQL 361
+ ++L L L +N +F + SL LD+ E K I ++ L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 362 KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL 421
++L N +L + LE L LS NRL L F + L +
Sbjct: 159 RYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 422 NEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
N + LE L+LS N + +P L P + ++L+HN
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTP-LHRLERVHLNHN 260
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 160/399 (40%), Gaps = 55/399 (13%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
L LD+S+N L+ S L LE L N + HS+ + +L+L + F+
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FT 318
Query: 325 GE------LPA----SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
+ LP SF L+ LE L++ + + L LK+L S++ S
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 378
Query: 375 IDLDMFLVNFKH--LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQH 432
+ V+ H L L+L+ N++S S F+++G
Sbjct: 379 TLTNETFVSLAHSPLHILNLTKNKISKIE------SDAFSWLG----------------- 415
Query: 433 YLEVLDLSCNKIHGKVP--KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
+LEVLDL N+I ++ +W ++N + LS+N + ++ + L
Sbjct: 416 HLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 472
Query: 491 LSY--NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
N P P P + L +N+ I + LEILDL +NNL+ L
Sbjct: 473 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 532
Query: 549 C--------LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
L S HL IL+L+ N F + F L +IDL N L +P S+
Sbjct: 533 ANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVF 590
Query: 601 NCS-SLKFLDLGNNQISGTFPSWLG-TLRELNVLILKSN 637
N SLK L+L N I+ G R L L ++ N
Sbjct: 591 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
L LD+ +N +S L P+ L +L+LQHN+ +TF +L + L N +
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGT 618
Q V +L LDL +N +S T
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 160/399 (40%), Gaps = 55/399 (13%)
Query: 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324
L LD+S+N L+ S L LE L N + HS+ + +L+L + F+
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FT 313
Query: 325 GE------LPA----SFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGP 374
+ LP SF L+ LE L++ + + L LK+L S++ S
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 375 IDLDMFLVNFKH--LEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQH 432
+ V+ H L L+L+ N++S S F+++G
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKISKIE------SDAFSWLG----------------- 410
Query: 433 YLEVLDLSCNKIHGKVP--KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLD 490
+LEVLDL N+I ++ +W ++N + LS+N + ++ + L
Sbjct: 411 HLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 467
Query: 491 LSY--NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548
N P P P + L +N+ I + LEILDL +NNL+ L
Sbjct: 468 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 527
Query: 549 C--------LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600
L S HL IL+L+ N F + F L +IDL N L +P S+
Sbjct: 528 ANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVF 585
Query: 601 NCS-SLKFLDLGNNQISGTFPSWLG-TLRELNVLILKSN 637
N SLK L+L N I+ G R L L ++ N
Sbjct: 586 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591
L LD+ +N +S L P+ L +L+LQHN+ +TF +L + L N +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 592 QGRIPRSLVNCSSLKFLDLGNNQISGT 618
Q V +L LDL +N +S T
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 8/228 (3%)
Query: 243 YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK 302
YL+L N++ + +L L+ L +S N + + L SL LEL NR
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 303 TPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI-PSSLRNLAQL 361
+ ++L L L +N +F + SL LD+ E K I ++ L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 362 KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL 421
++L N +L + LE L LS NRL L F + L +
Sbjct: 159 RYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 422 NEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468
N + LE L+LS N + +P L P + ++L+HN
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTP-LHRLERVHLNHN 260
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC---------LKRLDISWNELSGELPA 281
+P+ + +L +L L + L ELP + + D L+ L + W + LPA
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA 200
Query: 282 SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
SI NL +L+ L++ + P ++ + +L L L P FG L+ L
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 342 ISECKFSSQIPSSLRNLAQLKFLEF 366
+ +C +P + L QL+ L+
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 304 PHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSL-------- 355
P + F L L+LA N LPAS +L L L I C +++P L
Sbjct: 120 PDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 356 -RNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFV 414
+ L L+ L ++G L + N ++L+ L + ++ LS AI + K +
Sbjct: 179 HQGLVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEEL 234
Query: 415 GLRSCN-LNEFPNFLKNQHYLEVLDL 439
LR C L +P + L+ L L
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLIL 260
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297
L L L L + + LP SI NL LK L I + LS PA I +L LE+L+L
Sbjct: 182 LVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC 239
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRN 357
P G L L L LP L LE LD+ C S++PS +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 358 L 358
L
Sbjct: 300 L 300
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Query: 231 IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN----- 285
+P L L L+ N L LP SI +L+ L+ L I ELP + +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 286 ----LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLD 341
L +L+ L L R P S+ N L L + ++ S PA +L LE LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELD 235
Query: 342 ISECKFSSQIPSSLRNLAQLK--FLEFSHNNFSGPIDL 377
+ C P A LK L+ N + P+D+
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 101/462 (21%), Positives = 178/462 (38%), Gaps = 64/462 (13%)
Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWL 316
S +L L+ LD+S+N LS + L+SL L L N ++ S+ + T+L L
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 128
Query: 317 SLASND-FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375
+ + D F+ F L LE L+I S P SL+++ + L +
Sbjct: 129 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH--IL 186
Query: 376 DLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ------KFNFVGLRSCNLNEFPNFLK 429
L++F+ +E L L L F + +T + KF F ++ +
Sbjct: 187 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK----------IT 236
Query: 430 NQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI-------GFYQHPMFFPR 482
++ +V+ L N+I G + + ++ S N + + PR
Sbjct: 237 DESLFQVMKL-LNQISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPR 295
Query: 483 NYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNL 542
Y + L Y+ + + +K +LV P + SLE LDLS N +
Sbjct: 296 FYLFYDLSTLYSLTERVKRITVENSKVFLV---------PCLLSQHLKSLEYLDLSENLM 346
Query: 543 --SGLLPQCLDNFSDHLSILDLQHNKFCG--SIPQTFLSGRSLMMIDLSDNLLQGRIPRS 598
L ++ L L L+ N +T L+ ++L ID+S N +P +
Sbjct: 347 VEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHS-MPET 405
Query: 599 LVNCSSLKFLDLGNNQI---SGTFPSWLGTLR--------------ELNVLILKSNKLHG 641
+K+L+L + +I +G P L L +L L + NKL
Sbjct: 406 CQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMT 465
Query: 642 MIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
+ P+ P L ++ +S N+ +P F ++Q +
Sbjct: 466 L---PDASL-LPMLLVLKISRNQLKS-VPDGIFDRLTSLQKI 502
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
G +++ L+LS NR + + L L L SN + SF +L SLE LD+S
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS-LSSNRLSLFTK 402
S+ S + L+ L FL N + + + F HL L L + FTK
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL----FSHLTKLQILRVGNMDTFTK 138
Query: 403 AIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
Q+ +F GL +LE L++ + + PK L S+QN S+
Sbjct: 139 I-----QRKDFAGLT---------------FLEELEIDASDLQSYEPKSL--KSIQNVSH 176
Query: 463 LNL 465
L L
Sbjct: 177 LIL 179
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 718 KGQMMSYDKVPNFLTGVI----LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL 773
KG S + +P+ LT + LS+NR + + LQ L L +N ++
Sbjct: 11 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNG 833
+L LE LDLS N S L+ L F N+ GN + T +TS
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----------LGNPYKTLGETSLFS 120
Query: 834 NL 835
+L
Sbjct: 121 HL 122
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 33/177 (18%)
Query: 154 SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXX 213
S + EL+NL L L+ N +L PN + KLTNLKEL L
Sbjct: 79 SALKELTNLTYLILTGNQLQSL-----PN--GVFDKLTNLKELVL--------------- 116
Query: 214 XXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISW 272
+L+ + LT L YL+L+ N L LP + L L LD+S+
Sbjct: 117 ---------VENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSY 166
Query: 273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329
N+L L L+ L L N+ + T L ++ L N + P
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 682 VVNTSELRYMEGMIYPFALVSYAALG---IYD-----------YSLTMSNKGQMMS---Y 724
+ N S+++ ++G+ Y V Y ALG ++D Y + N+ Q + +
Sbjct: 47 IANNSDIKSVQGIQY-LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 725 DKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDL 784
DK+ N L ++L N+ L L L+LA+N L LT L LDL
Sbjct: 106 DKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 785 SNNKFSGQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDK 828
S N+ +P+ + D LT L+ + N L +P G FD+
Sbjct: 165 SYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS-VPDG----VFDR 203
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%)
Query: 257 TSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWL 316
+++ L L L ++ N+L L +L++L L N+ + T L +L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 317 SLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPID 376
+LA N F L +L LD+S + S L QLK L N D
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 83/228 (36%), Gaps = 49/228 (21%)
Query: 302 KTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQL 361
+ P + TRL L+L N SF +LR LE L +S + + LA L
Sbjct: 57 EVPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 362 KFLEFSHNNFSG-PIDLDMFLVNFKHL---------------------EHLSLSS-NRLS 398
LE N + P ++L K L L L RLS
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 399 LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK-------- 450
++ F ++ L CNL E PN L L+ LDLS N + P
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 451 ---WLIEP-----------SMQNFSYLNLSHNFLIGFYQHPMFFPRNY 484
W+I+ ++Q+ +NL+HN L H +F P ++
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHH 280
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
S +L L+ L +S N + + LA+L LEL NR + ++L L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 318 LASNDFSGELPASFGNLRSLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHNNFSGPID 376
L +N +F + SL LD+ E K S I + L+ L++L + N +
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 377 LDMFLVNFKHLEHLSLSSNRLSLFTKAIF 405
L + L+ L LS N LS F
Sbjct: 203 LTPLI----KLDELDLSGNHLSAIRPGSF 227
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297
L+ L YL+L+ NL E+P ++ L L LD+S N LS P S L L++L + +
Sbjct: 184 LSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 298 RFRGKTPHSMGNFTRLYWLSLASNDFS 324
+ + ++ N L ++LA N+ +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 30/276 (10%)
Query: 565 NKFCGSIPQTFL-SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
N +P L S R + +++L+D ++ + +++ L +G N I P
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 624 GTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVV 683
+ L VL+L+ N L + R P+L + +SNN ++ FQ ++Q +
Sbjct: 114 QNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNL 170
Query: 684 NTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743
S R L D SL S +SY+ + + ++ D
Sbjct: 171 QLSSNR----------------LTHVDLSLIPSLFHANVSYNLLSTL--AIPIAVEELDA 212
Query: 744 EIPTSIANLKG-----LQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLV 798
SI ++G L +L L +N+L + L N GL +DLS N+ + V
Sbjct: 213 S-HNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 799 DLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGN 834
+ LE +SNN L G PT + N
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 123/311 (39%), Gaps = 74/311 (23%)
Query: 249 NNLLGELPTSIGNLDCLKRLDI-SWNELSGEL--PASIGNLASLEQLELSLNRFRGKTPH 305
N+ + +LP ++ LD +++++ + N+L E + ++++L + N R PH
Sbjct: 54 NSTMRKLPAAL--LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111
Query: 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
N L L L ND S LP N +L L
Sbjct: 112 VFQNVPLLTVLVLERNDLSS-LPRGI-----------------------FHNTPKLTTLS 147
Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL----FTKAIFNTSQKFNFVGLRSCNL 421
S+NN I+ D F L++L LSSNRL+ ++F+ + +N + + +
Sbjct: 148 MSNNNLER-IEDDTFQATTS-LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205
Query: 422 NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
+E LD S N I + P + L L HN L +
Sbjct: 206 -----------AVEELDASHNSI-----NVVRGPVNVELTILKLQHNNLTD-----TAWL 244
Query: 482 RNYDGFT-LDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTG------KIPFWICNSSNS 531
NY G +DLSYN L+ + P + + +SNN L IP +
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------T 296
Query: 532 LEILDLSYNNL 542
L++LDLS+N+L
Sbjct: 297 LKVLDLSHNHL 307
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
G +++ L+LS NR + + L L L SN + SF +L SLE LD+S
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS-LSSNRLSLFTK 402
S+ S + L+ L FL N + + + F HL L L + FTK
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL----FSHLTKLQILRVGNMDTFTK 164
Query: 403 AIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSY 462
Q+ +F GL +LE L++ + + PK L S+QN S+
Sbjct: 165 I-----QRKDFAGLT---------------FLEELEIDASDLQSYEPKSL--KSIQNVSH 202
Query: 463 LNL 465
L L
Sbjct: 203 LIL 205
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 258 SIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSM-GNFTRLYWL 316
S +L L+ LD+S+N LS + L+SL L L N ++ S+ + T+L L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 317 SLASND-FSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFL 364
+ + D F+ F L LE L+I S P SL+++ + L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 718 KGQMMSYDKVPNFLTGVI----LSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL 773
KG S + +P+ LT + LS+NR + + LQ L L +N ++
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNG 833
+L LE LDLS N S L+ L F N+ GN + T +TS
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----------LGNPYKTLGETSLFS 146
Query: 834 NL 835
+L
Sbjct: 147 HL 148
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
++ I L N ++ P + L+ +DL NNQIS P LR LN L+L NK+
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639
++ I L N ++ P + L+ +DL NNQIS P LR LN L+L NK+
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812
K L L++++N L I CL ++ LDL +NK IP+Q+V L L+ NV++N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Query: 813 LTGPIPQG--NQFPTFDKTSFNGNLGLCGKP 841
L +P G ++ + K + N C P
Sbjct: 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 32/189 (16%)
Query: 608 LDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667
LD NN ++ T G L EL LIL+ N+L + + L+ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 668 KLPSKYFQC-WNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK 726
K C W S +L + LT + +
Sbjct: 388 -YDEKKGDCSWTK----------------------SLLSLNMSSNILTDT------IFRC 418
Query: 727 VPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSN 786
+P + + L SN+ IP + L+ LQ L++A+N L LT L+ + L
Sbjct: 419 LPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477
Query: 787 NKFSGQIPQ 795
N + P+
Sbjct: 478 NPWDCSCPR 486
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSL 296
LTKL +L+L +N L +L L L ++ N+L+ LP + +L L++L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
N+ + T+L L L +N +F L +L+ L +S + S +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 357 NLAQLKFLEFSHNNF 371
L +L+ + N F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI 571
VS NSL C + S+ +L+LS N L+G + +CL + +LDL HN SI
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVLDL-HNNRIMSI 465
Query: 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNV 631
P+ ++L ++++ N L+ +SL+++ L +N T P +R L+
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSE 521
Query: 632 LILKSNKLHGMIR 644
I NK G++R
Sbjct: 522 WI---NKHSGVVR 531
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV--NCSSLKFLDLGNNQI 615
+ L+ N F S+ Q + + L + L N L+ +L+ N SSL+ LD+ N +
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
Query: 616 -SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
S + + VL L SN L G + C P+++++DL NNR
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNNRI 462
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 238 LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLEQLELSL 296
LTKL +L+L +N L +L L L ++ N+L+ LP + +L L++L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR 356
N+ + T+L L L +N +F L +L+ L +S + S +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 357 NLAQLKFLEFSHNNF 371
L +L+ + N F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGN 309
N L ELP I NL L+ LD+S N L+ LPA +G+ L+ + P GN
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGN 314
Query: 310 FTRLYWLSLASN 321
L +L + N
Sbjct: 315 LCNLQFLGVEGN 326
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 285 NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISE 344
+L++L+ +S N F+ TRLY L N + ELPA NL +L LD+S
Sbjct: 230 DLSNLQIFNISANIFK------YDFLTRLY---LNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 345 CKFSSQIPSSLRNLAQLKFLEFSHN 369
+ +S +P+ L + QLK+ F N
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFDN 303
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 489 LDLSYNYLQGPLPVPP--PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNL--SG 544
L +S N+L + +PP P + L +++ K+P + + ++ +++ N L SG
Sbjct: 107 LYISKNHL---VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 545 LLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604
P D L+ L + K G IP+ +L + L N +Q L+ S
Sbjct: 164 FEPGAFDGLK--LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218
Query: 605 LKFLDLGNNQI----SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDL 660
L L LG+NQI +G+ S+L TLREL+ L +NKL R P G P+L+++ +
Sbjct: 219 LYRLGLGHNQIRMIENGSL-SFLPTLRELH---LDNNKLS---RVP---AGLPDLKLLQV 268
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 93/258 (36%), Gaps = 39/258 (15%)
Query: 581 LMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL- 639
L ++ SD L+ +P+ + ++L LDL NN IS L+ L L+L +NK+
Sbjct: 35 LRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 640 ---------------------HGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN 678
H + PN ELRI D NR K+P F
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD---NRIR-KVPKGVFSGLR 147
Query: 679 AMQVVNTSELRYMEGMIYPFAL--VSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVIL 736
M + P A + L I + LT K +P L + L
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-------DLPETLNELHL 200
Query: 737 SSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQ 796
N+ + L L L +N + L L L L L NNK S ++P
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 797 LVDLTFLEFFNVSNNNLT 814
L DL L+ + NN+T
Sbjct: 260 LPDLKLLQVVYLHTNNIT 277
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 682 VVNTSELRYMEGMIYPFALVSYAALG---IYD-----------YSLTMSNKGQMMS---Y 724
+ N S+++ ++G+ Y V Y ALG ++D Y + N+ Q + +
Sbjct: 47 IANNSDIKSVQGIQY-LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 725 DKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDL 784
DK+ N L ++L N+ L L L L +N L LT L LDL
Sbjct: 106 DKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 785 SNNKFSGQIPQQLVD-LTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLP 843
NN+ +P+ + D LT L+ ++++N L +P G FD+ + ++ L P
Sbjct: 165 DNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS-VPDG----VFDRLTSLTHIWLLNNPWD 218
Query: 844 KECEN 848
C +
Sbjct: 219 CACSD 223
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 68/165 (41%), Gaps = 36/165 (21%)
Query: 154 SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHXXXX 213
S + EL+NL L L+ N +L PN + KLTNLKEL L
Sbjct: 79 SALKELTNLTYLILTGNQLQSL-----PN--GVFDKLTNLKELVL--------------- 116
Query: 214 XXXXXXXXXXGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISW 272
+L+ + LT L YL L ++N L LP + L L RLD+
Sbjct: 117 ---------VENQLQSLPDGVFDKLTNLTYLYL-YHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLS 317
N+L L L+QL L+ N+ + P G F RL L+
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPD--GVFDRLTSLT 208
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
Query: 225 CELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSI-GNLDCLKRLDISWNELSGELPASI 283
C +GR G + YLDL N+ L LP + L L +L + N+L LP +
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71
Query: 284 GN-LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDI 342
N L SL L LS N+ + T+L L+L +N F L L+ L +
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 343 SECKFSSQIPSSLRNLAQLKFLEFSHN 369
+ + S L L+++ N
Sbjct: 132 YQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 80/338 (23%)
Query: 249 NNLLGELPTSIGNLDCLKRLDI-SWNELSGEL--PASIGNLASLEQLELSLNRFRGKTPH 305
N+ + +LP ++ LD +++++ + N+L E + ++++L + N R PH
Sbjct: 60 NSTMRKLPAAL--LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117
Query: 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365
N L L L ND S LP N +L L
Sbjct: 118 VFQNVPLLTVLVLERNDLSS-LPRGI-----------------------FHNTPKLTTLS 153
Query: 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL----FTKAIFNTSQKFNFVGLRSCNL 421
S+NN I+ D F L++L LSSNRL+ ++F+ + +N + + +
Sbjct: 154 MSNNNLER-IEDDTFQATTS-LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211
Query: 422 NEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFP 481
+E LD S N I+ + P + L L HN L +
Sbjct: 212 -----------AVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLTD-----TAWL 250
Query: 482 RNYDGFT-LDLSYNYLQGPLPVP---PPQTKHYLVSNNSLTG------KIPFWICNSSNS 531
NY G +DLSYN L+ + P + + +SNN L IP +
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------T 302
Query: 532 LEILDLSYNNLSGL---LPQ--CLDN-FSDHLSILDLQ 563
L++LDLS+N+L + PQ L+N + DH SI+ L+
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 30/268 (11%)
Query: 565 NKFCGSIPQTFL-SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL 623
N +P L S R + +++L+D ++ + +++ L +G N I P
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 624 GTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ-- 681
+ L VL+L+ N L + R P+L + +SNN ++ FQ ++Q
Sbjct: 120 QNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 176
Query: 682 VVNTSELRYMEGMIYP---FALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSS 738
++++ L +++ + P A VSY L ++ ++ + S++ + N + G
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTL--AIPIAVEELDASHNSI-NVVRG----- 228
Query: 739 NRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLV 798
P ++ L +L L +N+L + L N GL +DLS N+ + V
Sbjct: 229 -------PVNVE----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 799 DLTFLEFFNVSNNNLTGPIPQGNQFPTF 826
+ LE +SNN L G PT
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTL 303
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 27/140 (19%)
Query: 704 AALGIYDYSLTMSNKGQMMSYDKVPNFLTG--VILSSNR---------FDGEIPTSIANL 752
A+LG++ Y L M++ G M S ++V +TG V LS +R ++G P S+
Sbjct: 49 ASLGVHTYELAMNHLGDMTS-EEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYR 107
Query: 753 KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI----PQQLVDLTFLEFFNV 808
K V + N G SC + + +L+ K +G++ PQ LVD V
Sbjct: 108 KKGYVTPVKN---QGQCGSCWA-FSSVGALEGQLKKKTGKLLNLSPQNLVDC-------V 156
Query: 809 SNNNLTGPIPQGNQFPTFDK 828
S N+ G N F K
Sbjct: 157 SENDGCGGGYMTNAFQYVQK 176
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 711 YSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770
+ L +S++G++ S+ + + G + NR + P I +L+G++V+ +A H +
Sbjct: 118 HCLALSSEGEVYSWGEAED---GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 771 SCLGNL 776
+ G+L
Sbjct: 175 TAAGDL 180
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 229 GRIPS--LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286
GRI S L G L L+ L+L N L G P + ++ L + N++ L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDF 323
L+ L L N+ P S + L L+LASN F
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 131/337 (38%), Gaps = 55/337 (16%)
Query: 330 SFGNLRSLEGLDISECKFSSQIPSSLRNL----------------AQLK--FLEFSHNNF 371
S+ NL+ L +++ C +Q+P L +L AQLK + + +
Sbjct: 486 SWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 372 SGPIDLDMFLVNFKHLEHLSLSSN-----RLSLFTKA--------IFNTSQKFNFVGLRS 418
+GP + +F + +LE S++ +L L F T+ K + L
Sbjct: 546 TGP-KIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604
Query: 419 CNLNEFP-NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHP 477
+ E P +F +E L S NK+ +P S+ ++ S+N + ++
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVXGSVDFSYNKIGSEGRNI 663
Query: 478 MFFPRNYDGF---TLDLSYNYLQGPLPVPPPQTK---HYLVSNNSLTGKIPF-----WIC 526
+Y G T+ LSYN +Q P T ++ +N+L IP
Sbjct: 664 SCSXDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLXTSIPENSLKPKDG 722
Query: 527 NSSNS--LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMI 584
N N+ L +DL +N L+ L +LS D+ +N F S P L+ L
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFS-SFPTQPLNSSQLKAF 781
Query: 585 ------DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
D N + + P + C SL L +G+N I
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 260 GNLDCLKRLDISWNELS----GELPA--------------------SIGNLASLEQLELS 295
G +K LD+S+N+++ G+L A + +L SLE L+LS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIP-- 352
N + G + L +L+L N + + + F NL +L+ L I + S+I
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 168
Query: 353 --SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQK 410
+ L +L +L+ S N+ L + + + HL+L + + + +
Sbjct: 169 DFAGLTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILSS 223
Query: 411 FNFVGLRSCNLNEF 424
++ LR NL F
Sbjct: 224 VRYLELRDTNLARF 237
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 153/401 (38%), Gaps = 43/401 (10%)
Query: 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
G A+++ L+LS N+ + L L L S+ + +F +L SLE LD+S
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKA 403
+ SS S L+ LK+L N + + + N +L+ L + +
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGN-------VE 160
Query: 404 IFNTSQKFNFVGLRSCNLNEFPNF-LKN---QHYLEVLDLSCNKIHGKVPKWLIE---PS 456
F+ ++ +F GL S N E L+N Q + D+ +H +L+E
Sbjct: 161 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 220
Query: 457 MQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNS 516
+ + YL L L F F P D + + +G + S N
Sbjct: 221 LSSVRYLELRDTNLARF----QFSPLPVDEVSSPMKKLAFRGSVLTDE--------SFNE 268
Query: 517 LTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
L K+ +I S +E D + N L P D S+ + + + IPQ +L
Sbjct: 269 LL-KLLRYILELSE-VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL--HIPQFYL 324
Query: 577 SGRSLMMIDLSDNLLQGRIPRS---LVNCS------SLKFLDLGNNQISGTF---PSWLG 624
+ L + + + + S LV CS SL+FLDL N + + + G
Sbjct: 325 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 384
Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
L L+L N L M + L +D+S N F
Sbjct: 385 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 425
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 34/245 (13%)
Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
IP L +++K LDL N+I+ L L VLILKS++++ + E +
Sbjct: 46 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGS 101
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT 714
L +DLS+N + L S +F S L+Y+ M P Y LG+
Sbjct: 102 LEHLDLSDNHLSS-LSSSWFG--------PLSSLKYLNLMGNP-----YQTLGVTSLFPN 147
Query: 715 MSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLG 774
++N + ++ N T + F G + +L L++ +L+ + L +
Sbjct: 148 LTNLQTL----RIGNVETFSEIRRIDFAG-----LTSLNELEIKALSLRNYQSQSLKSIR 198
Query: 775 NLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT----GPIPQGNQFPTFDKTS 830
++ L +L LS + F +I + L+ + + + + NL P+P K +
Sbjct: 199 DIHHL-TLHLSESAFLLEIFADI--LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 255
Query: 831 FNGNL 835
F G++
Sbjct: 256 FRGSV 260
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 34/190 (17%)
Query: 264 CLKRLDISWNELS----GELPA--------------------SIGNLASLEQLELSLNRF 299
+K LD+S+N+++ G+L A + +L SLE L+LS N
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 300 RGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIP----SS 354
+ G + L +L+L N + + + F NL +L+ L I + S+I +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Query: 355 LRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFV 414
L +L +L+ S N+ L + + + HL+L + + + + ++
Sbjct: 147 LTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201
Query: 415 GLRSCNLNEF 424
LR NL F
Sbjct: 202 ELRDTNLARF 211
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 153/401 (38%), Gaps = 43/401 (10%)
Query: 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDIS 343
G A+++ L+LS N+ + L L L S+ + +F +L SLE LD+S
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 344 ECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKA 403
+ SS S L+ LK+L N + + + N +L+ L + +
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGN-------VE 134
Query: 404 IFNTSQKFNFVGLRSCNLNEFPNF-LKN---QHYLEVLDLSCNKIHGKVPKWLIE---PS 456
F+ ++ +F GL S N E L+N Q + D+ +H +L+E
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 457 MQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNS 516
+ + YL L L F F P D + + +G + S N
Sbjct: 195 LSSVRYLELRDTNLARF----QFSPLPVDEVSSPMKKLAFRGSVLTDE--------SFNE 242
Query: 517 LTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL 576
L K+ +I S +E D + N L P D S+ + + + IPQ +L
Sbjct: 243 LL-KLLRYILELSE-VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL--HIPQFYL 298
Query: 577 SGRSLMMIDLSDNLLQGRIPRS---LVNCS------SLKFLDLGNNQISGTF---PSWLG 624
+ L + + + + S LV CS SL+FLDL N + + + G
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 625 TLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665
L L+L N L M + L +D+S N F
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 34/245 (13%)
Query: 595 IPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654
IP L +++K LDL N+I+ L L VLILKS++++ + E +
Sbjct: 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGS 75
Query: 655 LRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLT 714
L +DLS+N + L S +F S L+Y+ M P Y LG+
Sbjct: 76 LEHLDLSDNHLSS-LSSSWFG--------PLSSLKYLNLMGNP-----YQTLGVTSLFPN 121
Query: 715 MSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLG 774
++N + ++ N T + F G + +L L++ +L+ + L +
Sbjct: 122 LTNLQTL----RIGNVETFSEIRRIDFAG-----LTSLNELEIKALSLRNYQSQSLKSIR 172
Query: 775 NLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT----GPIPQGNQFPTFDKTS 830
++ L +L LS + F +I + L+ + + + + NL P+P K +
Sbjct: 173 DIHHL-TLHLSESAFLLEIFADI--LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 831 FNGNL 835
F G++
Sbjct: 230 FRGSV 234
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 16/61 (26%)
Query: 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLR----SLEGLDISE 344
LEQ ELS NR++G L+ SLA +D SG + FG + +L+G D+ +
Sbjct: 133 LEQCELSGNRWQG---------ANLFGASLAGSDLSG---SEFGQIDWASVNLQGCDLRQ 180
Query: 345 C 345
C
Sbjct: 181 C 181
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 748 SIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790
S+ +LK L++LS+ NN L ++ LG L+ LE LDL N+ +
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLT--------GKIPFWICNSS---------- 529
TLDL+ NY+Q L P +T H +NN+++ GK ++ N+
Sbjct: 84 TLDLNNNYVQELLVGPSIETLH--AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141
Query: 530 --NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
+ ++ LDL N + + L SD L L+LQ+N Q + L +DLS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLS 199
Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
N L P + + + ++ L NN++
Sbjct: 200 SNKLAFMGP-EFQSAAGVTWISLRNNKL 226
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS 616
+ LDL + P LS ++ +DL N + P L ++L++L +GN Q+S
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDL--NQITNISP--LAGLTNLQYLSIGNAQVS 164
Query: 617 GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
P L L +L L NK I + + P L + L NN+ + P
Sbjct: 165 DLTP--LANLSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNNQISDVSP 212
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLT--------GKIPFWICNSS---------- 529
TLDL+ NY+Q L P +T H +NN+++ GK ++ N+
Sbjct: 84 TLDLNNNYVQELLVGPSIETLH--AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141
Query: 530 --NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587
+ ++ LDL N + + L SD L L+LQ+N Q + L +DLS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLS 199
Query: 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQI 615
N L P + + + ++ L NN++
Sbjct: 200 SNKLAFMGPE-FQSAAGVTWISLRNNKL 226
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS 616
+ LDL + P LS ++ +DL N + P L ++L++L +GNNQ++
Sbjct: 115 IKTLDLTSTQITDVTPLAGLSNLQVLYLDL--NQITNISP--LAGLTNLQYLSIGNNQVN 170
Query: 617 GTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670
P L L +L L NK I + + P L + L +N+ + P
Sbjct: 171 DLTP--LANLSKLTTLRADDNK----ISDISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 316 LSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG-P 374
L ++ N F P SF L SL+ L + + S ++ LA L L +HNN S P
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 375 IDLDM---FLVNFKHLEH 389
DL +LV HL H
Sbjct: 283 HDLFTPLRYLVEL-HLHH 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,767,295
Number of Sequences: 62578
Number of extensions: 1066544
Number of successful extensions: 3302
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2117
Number of HSP's gapped (non-prelim): 611
length of query: 922
length of database: 14,973,337
effective HSP length: 108
effective length of query: 814
effective length of database: 8,214,913
effective search space: 6686939182
effective search space used: 6686939182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)