Query 002435
Match_columns 922
No_of_seqs 841 out of 5989
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 23:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.1E-73 1.3E-77 710.8 50.1 584 27-841 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.1E-57 1.5E-61 565.4 42.8 515 160-838 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.5E-38 7.5E-43 332.9 8.4 404 194-677 55-463 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 2.2E-40 4.7E-45 335.3 -16.6 476 87-640 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 7.9E-37 1.7E-41 322.7 7.3 390 162-611 54-447 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.2E-39 6.9E-44 326.8 -12.6 482 160-672 45-545 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.1E-36 1.5E-40 332.5 -4.2 450 207-811 60-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.1E-35 6.8E-40 327.4 -3.8 471 107-664 17-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.5E-33 5.3E-38 297.6 -2.0 375 108-646 4-381 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.9E-31 4E-36 283.4 -3.1 365 190-666 6-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.4E-27 7.3E-32 239.8 -1.4 302 312-679 68-372 (498)
12 PLN03210 Resistant to P. syrin 99.9 1E-21 2.2E-26 247.1 27.1 359 85-469 532-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 5.2E-21 1.1E-25 240.7 28.3 345 233-638 552-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 227.8 18.4 80 731-819 384-463 (788)
15 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.8E-29 221.2 -6.5 276 194-472 70-360 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 2.6E-21 5.7E-26 225.0 16.9 186 531-800 283-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 210.7 13.3 243 488-814 182-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1E-18 2.2E-23 205.2 12.5 54 411-471 180-233 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7.7E-19 1.7E-23 192.4 5.0 256 116-372 3-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.7E-23 188.9 4.1 230 140-372 2-263 (319)
21 PLN03150 hypothetical protein; 99.6 4.9E-16 1.1E-20 182.4 12.1 118 730-847 419-538 (623)
22 KOG0617 Ras suppressor protein 99.6 3.8E-17 8.2E-22 148.0 -5.4 158 106-300 28-186 (264)
23 KOG0617 Ras suppressor protein 99.5 7.4E-17 1.6E-21 146.1 -5.9 159 193-357 35-194 (264)
24 PLN03150 hypothetical protein; 99.4 6.9E-13 1.5E-17 156.0 14.3 127 24-171 367-501 (623)
25 KOG1909 Ran GTPase-activating 99.1 1.3E-11 2.8E-16 125.6 0.3 192 157-371 89-310 (382)
26 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.8E-15 131.0 7.6 179 579-819 116-295 (394)
27 KOG1909 Ran GTPase-activating 99.1 5.4E-11 1.2E-15 121.2 3.3 247 130-397 24-310 (382)
28 COG4886 Leucine-rich repeat (L 99.1 2.2E-10 4.7E-15 129.3 8.4 183 132-329 112-295 (394)
29 KOG0532 Leucine-rich repeat (L 99.1 1.3E-11 2.8E-16 132.7 -1.8 172 487-671 78-251 (722)
30 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.5E-16 133.2 -3.5 175 109-300 73-247 (722)
31 KOG3207 Beta-tubulin folding c 99.0 7.9E-11 1.7E-15 123.1 1.3 184 261-445 144-339 (505)
32 KOG3207 Beta-tubulin folding c 99.0 6.9E-11 1.5E-15 123.6 0.8 215 133-372 118-339 (505)
33 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.7E-15 114.4 0.0 131 239-375 284-415 (490)
34 KOG1259 Nischarin, modulator o 98.9 3E-10 6.4E-15 112.7 1.4 133 286-426 283-416 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3E-14 104.6 4.7 106 213-323 17-125 (175)
36 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.7E-14 85.4 3.4 60 754-813 2-61 (61)
37 KOG4658 Apoptotic ATPase [Sign 98.8 2.7E-09 6E-14 128.2 6.1 85 132-224 567-651 (889)
38 PF14580 LRR_9: Leucine-rich r 98.8 2.6E-09 5.6E-14 102.8 4.4 84 237-324 17-101 (175)
39 PF13855 LRR_8: Leucine rich r 98.8 5.3E-09 1.2E-13 82.6 3.9 61 729-789 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 4.8E-09 1E-13 126.1 4.3 178 86-276 546-730 (889)
41 KOG0531 Protein phosphatase 1, 98.7 3.7E-09 8.1E-14 119.3 0.0 199 259-471 91-290 (414)
42 KOG0531 Protein phosphatase 1, 98.6 3.3E-09 7.2E-14 119.7 -2.0 62 109-173 70-131 (414)
43 PF08263 LRRNT_2: Leucine rich 98.6 6.7E-08 1.5E-12 69.6 4.4 42 28-81 2-43 (43)
44 KOG2120 SCF ubiquitin ligase, 98.5 2.4E-09 5.2E-14 106.5 -6.1 177 138-323 187-375 (419)
45 KOG2982 Uncharacterized conser 98.4 1.1E-07 2.5E-12 94.8 3.1 204 262-465 70-286 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.6E-13 101.7 -4.3 156 161-322 186-349 (419)
47 KOG4341 F-box protein containi 98.4 1E-08 2.2E-13 107.1 -5.9 298 85-389 138-456 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.3 3.2E-07 6.9E-12 90.5 2.3 247 132-399 26-317 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.6E-13 111.9 -7.7 125 241-371 166-291 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.3 2.3E-07 5.1E-12 91.4 0.6 189 110-301 29-256 (388)
51 KOG2982 Uncharacterized conser 98.2 4.1E-07 9E-12 90.9 1.8 88 357-444 69-158 (418)
52 KOG4579 Leucine-rich repeat (L 98.2 7.9E-08 1.7E-12 85.0 -4.4 58 754-813 78-135 (177)
53 KOG1859 Leucine-rich repeat pr 98.1 1.7E-07 3.6E-12 104.2 -3.4 128 532-667 166-293 (1096)
54 KOG4341 F-box protein containi 98.0 3.2E-07 7E-12 96.1 -3.6 298 137-464 139-458 (483)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.2E-10 57.5 2.4 36 754-790 2-37 (44)
56 KOG4579 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 76.2 -2.5 60 239-300 77-136 (177)
57 PRK15386 type III secretion pr 97.8 0.00012 2.5E-09 79.6 9.8 32 579-613 156-187 (426)
58 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 72.1 5.2 126 533-662 22-149 (233)
59 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.8E-10 55.8 2.6 38 730-768 2-39 (44)
60 PRK15386 type III secretion pr 97.6 0.00024 5.1E-09 77.2 8.8 76 575-665 48-124 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 89.2 3.6 152 135-294 121-282 (699)
62 KOG3665 ZYG-1-like serine/thre 97.5 7.4E-05 1.6E-09 88.2 4.1 152 159-318 121-282 (699)
63 KOG1644 U2-associated snRNP A' 97.2 0.00063 1.4E-08 65.1 5.7 66 332-398 61-126 (233)
64 PF13306 LRR_5: Leucine rich r 96.7 0.0031 6.7E-08 58.3 5.9 36 234-270 30-65 (129)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0037 8E-08 57.8 6.4 83 234-319 7-89 (129)
66 KOG2739 Leucine-rich acidic nu 96.6 0.00097 2.1E-08 66.8 2.1 61 214-276 42-104 (260)
67 KOG1947 Leucine rich repeat pr 96.6 0.00084 1.8E-08 78.1 1.4 16 331-346 358-373 (482)
68 KOG1947 Leucine rich repeat pr 96.5 0.00056 1.2E-08 79.5 -0.9 110 189-298 186-306 (482)
69 KOG2123 Uncharacterized conser 96.4 0.00022 4.7E-09 71.3 -3.8 85 262-350 18-103 (388)
70 KOG2739 Leucine-rich acidic nu 96.1 0.0046 1E-07 62.0 3.2 67 599-666 61-129 (260)
71 KOG2123 Uncharacterized conser 95.9 0.00044 9.6E-09 69.1 -4.6 87 214-304 18-105 (388)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0045 9.7E-08 37.0 0.6 12 755-766 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0052 1.1E-07 36.7 0.8 20 779-799 2-21 (22)
74 KOG4308 LRR-containing protein 93.9 0.00087 1.9E-08 75.9 -10.2 88 238-325 203-304 (478)
75 KOG4308 LRR-containing protein 93.4 0.001 2.2E-08 75.3 -10.7 136 217-372 146-303 (478)
76 smart00370 LRR Leucine-rich re 89.0 0.32 7E-06 30.3 2.0 17 777-793 2-18 (26)
77 smart00369 LRR_TYP Leucine-ric 89.0 0.32 7E-06 30.3 2.0 17 777-793 2-18 (26)
78 KOG0473 Leucine-rich repeat pr 87.6 0.025 5.3E-07 55.5 -5.6 83 729-814 42-124 (326)
79 smart00369 LRR_TYP Leucine-ric 87.1 0.41 8.9E-06 29.8 1.6 23 752-774 1-23 (26)
80 smart00370 LRR Leucine-rich re 87.1 0.41 8.9E-06 29.8 1.6 23 752-774 1-23 (26)
81 PF13504 LRR_7: Leucine rich r 85.7 0.58 1.3E-05 25.9 1.5 10 412-421 4-13 (17)
82 KOG3864 Uncharacterized conser 84.2 0.18 4E-06 48.8 -1.6 82 137-223 102-184 (221)
83 KOG3864 Uncharacterized conser 83.5 0.25 5.3E-06 48.0 -1.0 60 336-395 102-161 (221)
84 PF13516 LRR_6: Leucine Rich r 83.1 0.19 4.2E-06 30.6 -1.3 13 778-790 3-15 (24)
85 KOG0473 Leucine-rich repeat pr 82.2 0.029 6.4E-07 55.0 -7.8 88 210-300 37-124 (326)
86 PF13516 LRR_6: Leucine Rich r 81.9 0.23 5E-06 30.3 -1.3 18 753-770 2-19 (24)
87 smart00365 LRR_SD22 Leucine-ri 72.2 3.1 6.8E-05 26.0 1.8 15 776-790 1-15 (26)
88 KOG4242 Predicted myosin-I-bin 70.2 32 0.0007 38.2 10.0 21 136-156 165-185 (553)
89 smart00368 LRR_RI Leucine rich 59.9 7.2 0.00016 24.8 1.8 14 777-790 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 58.9 23 0.0005 39.3 6.4 40 434-473 415-455 (553)
91 PF01102 Glycophorin_A: Glycop 48.5 19 0.0004 32.4 3.1 22 881-902 67-88 (122)
92 smart00364 LRR_BAC Leucine-ric 47.5 13 0.00029 23.2 1.4 17 410-426 3-19 (26)
93 TIGR00864 PCC polycystin catio 43.0 13 0.00029 50.3 2.0 32 609-640 1-32 (2740)
94 PF15179 Myc_target_1: Myc tar 42.2 13 0.00029 35.2 1.2 32 872-904 18-49 (197)
95 KOG3763 mRNA export factor TAP 40.1 19 0.00041 40.9 2.2 62 577-640 216-283 (585)
96 PF03302 VSP: Giardia variant- 32.7 31 0.00068 38.5 2.6 23 871-893 366-388 (397)
97 PF03229 Alpha_GJ: Alphavirus 32.1 31 0.00067 30.0 1.8 9 882-890 87-95 (126)
98 TIGR00985 3a0801s04tom mitocho 29.9 30 0.00066 32.3 1.6 18 879-896 11-28 (148)
99 PTZ00473 Plasmodium Vir superf 28.7 49 0.0011 35.8 3.0 6 912-917 304-309 (420)
100 KOG3763 mRNA export factor TAP 27.7 41 0.00089 38.3 2.4 14 434-447 272-285 (585)
101 TIGR00864 PCC polycystin catio 27.2 36 0.00077 46.6 2.1 33 759-791 1-33 (2740)
102 PF08114 PMP1_2: ATPase proteo 24.8 1E+02 0.0023 21.5 2.9 7 895-901 28-34 (43)
103 PF06305 DUF1049: Protein of u 24.7 42 0.00091 26.5 1.4 15 879-893 24-38 (68)
104 PTZ00382 Variant-specific surf 24.3 49 0.0011 28.5 1.7 19 873-891 67-85 (96)
105 PF04478 Mid2: Mid2 like cell 23.1 32 0.0007 32.0 0.4 6 878-883 53-58 (154)
106 smart00367 LRR_CC Leucine-rich 22.1 61 0.0013 19.9 1.4 11 160-170 2-12 (26)
107 COG3105 Uncharacterized protei 21.8 40 0.00088 30.1 0.8 19 877-895 9-27 (138)
108 PRK11677 hypothetical protein; 21.5 19 0.00041 33.0 -1.3 21 870-890 1-21 (134)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-73 Score=710.78 Aligned_cols=584 Identities=38% Similarity=0.615 Sum_probs=420.4
Q ss_pred CHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCcccCccc
Q 002435 27 HSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSG 106 (922)
Q Consensus 27 ~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~ 106 (922)
+++|++||++||+++.++.+ .+.+|+. ..+||.|+||+|++ .++|+.|+|+++.++|.++. .
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~------------~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK------------YLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--A 88 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc------------cCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--H
Confidence 55899999999999975543 5789976 67899999999986 46999999999999987654 7
Q ss_pred cccCCCCCeeeCCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 107 LFKLVHLEWLDLAFNYFICSEIPPEII-NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 107 l~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
+..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+.+.+|. +.+++|++|++++|.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-------------- 151 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-------------- 151 (968)
T ss_pred HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc--------------
Confidence 77788888888888877654 666544 777777777777777776664 345566666666554
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|
T Consensus 152 -----------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 152 -----------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred -----------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 344445555555555555555555555555555555555555555555555555555555556
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 345 (922)
++|++++|.+++.+|..+.++++|++|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666655555555555555556666666555555555555555555555555555555555555555556666666666
Q ss_pred ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP 425 (922)
Q Consensus 346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp 425 (922)
.+.+.+|..+..+++|+.|++++|.+.+.++
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------------------------------------------------- 325 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIP------------------------------------------------- 325 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCC-------------------------------------------------
Confidence 5555555555555555555555554443322
Q ss_pred ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435 426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP 505 (922)
Q Consensus 426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~ 505 (922)
..+..+++|+.|++++|.+.+.+|..+.
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~---------------------------------------------------- 353 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLG---------------------------------------------------- 353 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHh----------------------------------------------------
Confidence 1122333444444444444443333322
Q ss_pred CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585 (922)
Q Consensus 506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 585 (922)
. +++|+.|++++|++++.+|..+..+. +|+.|++++|++.+.+|..+..+++|+.|+
T Consensus 354 ---------------------~-~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 354 ---------------------K-HNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred ---------------------C-CCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 2 44566666666666666666666655 577777777777777777777777788888
Q ss_pred cCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcC
Q 002435 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665 (922)
Q Consensus 586 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l 665 (922)
+++|++++..|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|... ..++|+.||+++|++
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l 487 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQF 487 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCcc
Confidence 88888877777778888888888888888888888777788888888888888887777653 357899999999999
Q ss_pred CCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccC
Q 002435 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEI 745 (922)
Q Consensus 666 ~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 745 (922)
++.+|..+ .. .+.|+.|+|++|+++|.+
T Consensus 488 ~~~~~~~~-~~---------------------------------------------------l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 488 SGAVPRKL-GS---------------------------------------------------LSELMQLKLSENKLSGEI 515 (968)
T ss_pred CCccChhh-hh---------------------------------------------------hhccCEEECcCCcceeeC
Confidence 98887541 11 245788999999999999
Q ss_pred cccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCC
Q 002435 746 PTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPT 825 (922)
Q Consensus 746 p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~ 825 (922)
|..++++++|++|+|++|.++|.+|..++++++|++|||++|+++|.+|..+.++++|++|++++|+++|.+|..++|.+
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCcCCCCCC
Q 002435 826 FDKTSFNGNLGLCGKP 841 (922)
Q Consensus 826 ~~~~s~~gn~~lcg~~ 841 (922)
+...+|.||+++||.+
T Consensus 596 ~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 596 INASAVAGNIDLCGGD 611 (968)
T ss_pred cChhhhcCCccccCCc
Confidence 9999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.1e-57 Score=565.42 Aligned_cols=515 Identities=36% Similarity=0.587 Sum_probs=361.3
Q ss_pred CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc-CCCCCCEEeccCccCCccCccccCCC
Q 002435 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA-NLSSLTLLSLSGCELRGRIPSLLGNL 238 (922)
Q Consensus 160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l 238 (922)
.+++.|++++|.+. +.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|. +.+
T Consensus 69 ~~v~~L~L~~~~i~-------~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNIS-------GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCCcc-------ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 35666666666532 22334455555555555555555554444433 455555555555555544443 234
Q ss_pred CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318 (922)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (922)
++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++.+++|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 45555555555555555555555555555555555555455555555555555555555555444555555555555555
Q ss_pred eccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccc
Q 002435 319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS 398 (922)
Q Consensus 319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 398 (922)
++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----------------------- 276 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI----------------------- 276 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-----------------------
Confidence 555554444444444555555555555444444444444444444444444443332
Q ss_pred ccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCC
Q 002435 399 LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPM 478 (922)
Q Consensus 399 ~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 478 (922)
|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+
T Consensus 277 --------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~-------- 320 (968)
T PLN00113 277 --------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNF-------- 320 (968)
T ss_pred --------------------------chhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCcc--------
Confidence 33344455566666666666666665554 444554444444433
Q ss_pred CCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCccc
Q 002435 479 FFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLS 558 (922)
Q Consensus 479 ~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~ 558 (922)
++.+|..+.. +++|+.|++++|.+++.+|..+..+. +|+
T Consensus 321 ---------------------------------------~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~ 359 (968)
T PLN00113 321 ---------------------------------------TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHN-NLT 359 (968)
T ss_pred ---------------------------------------CCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCC-CCc
Confidence 2334444444 78899999999999999999999987 799
Q ss_pred EEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCc
Q 002435 559 ILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNK 638 (922)
Q Consensus 559 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 638 (922)
.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|+
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeec
Q 002435 639 LHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNK 718 (922)
Q Consensus 639 l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 718 (922)
+.+.+|... ..+++|+.|++++|++.+.+|..+ .
T Consensus 440 l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~------------------------------------------- 473 (968)
T PLN00113 440 LQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G------------------------------------------- 473 (968)
T ss_pred ccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-------------------------------------------
Confidence 999887655 578999999999999998777421 0
Q ss_pred ccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCccccc
Q 002435 719 GQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLV 798 (922)
Q Consensus 719 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~ 798 (922)
...|+.|||++|+++|.+|..+.++++|+.|+|++|++++.+|+.++++++|++|+|++|.++|.+|..+.
T Consensus 474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 13588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeccCCccccCCCCCC-CCCCCCccccCCCcCCC
Q 002435 799 DLTFLEFFNVSNNNLTGPIPQGN-QFPTFDKTSFNGNLGLC 838 (922)
Q Consensus 799 ~L~~L~~L~ls~N~lsg~iP~~~-~~~~~~~~s~~gn~~lc 838 (922)
+++.|+.||+++|+++|.+|... .+..+......+|+..+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999752 23334444556665444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-38 Score=332.89 Aligned_cols=404 Identities=24% Similarity=0.281 Sum_probs=255.4
Q ss_pred CEEEcCCCcCCCCCchhccCC--CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcc
Q 002435 194 KELALGGVTISSPIPHSLANL--SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS 271 (922)
Q Consensus 194 ~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 271 (922)
+.|++++..+....-..+..+ +.-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 345555555443222222222 23344666666666555555666666666666666655 445444444456666666
Q ss_pred cCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccC
Q 002435 272 WNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI 351 (922)
Q Consensus 272 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 351 (922)
+|.|+..-.+.+..++.|+.|||+.|.++......|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 66665555555555666666666666665544445555555666666666665555555555556666666666665544
Q ss_pred chhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCC
Q 002435 352 PSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQ 431 (922)
Q Consensus 352 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~ 431 (922)
+..|..+++|+.|+|..|.+. .+....| .++++|+.|.+..|.+..+.+++|..+.++++|+|+.|+++.
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~ir-ive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------- 283 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIR-IVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------- 283 (873)
T ss_pred HHHhhhcchhhhhhcccccee-eehhhhh-cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------
Confidence 455555666666666666554 2222222 555555555555555555555555555555555555554443
Q ss_pred CCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceee
Q 002435 432 HYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYL 511 (922)
Q Consensus 432 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ 511 (922)
.-..|+. ++++|+.|++++|.|..+....+.+
T Consensus 284 ---------------vn~g~lf--gLt~L~~L~lS~NaI~rih~d~Wsf------------------------------- 315 (873)
T KOG4194|consen 284 ---------------VNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWSF------------------------------- 315 (873)
T ss_pred ---------------hhccccc--ccchhhhhccchhhhheeecchhhh-------------------------------
Confidence 3333433 4445555555544444333222222
Q ss_pred ccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcc
Q 002435 512 VSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLL 591 (922)
Q Consensus 512 ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 591 (922)
+++|++|+|++|+|+...+.+|..+. .|++|+|++|+|+..-...|..+.+|++|||++|.|
T Consensus 316 -----------------tqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 316 -----------------TQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred -----------------cccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 56788888888888887788888887 688888888888877778888888888889888888
Q ss_pred cccCCc---cccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435 592 QGRIPR---SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668 (922)
Q Consensus 592 ~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 668 (922)
+..+.+ .|.++++|+.|+|.+|++..+.-.+|.+++.|+.|+|.+|.+..+-|..+ ..+ +|+.|-+..-.|-|.
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc--ccc-hhhhhhhcccceEEe
Confidence 776543 57788889999999999887777888889999999999998888876665 444 788888888888888
Q ss_pred CChhhhhcc
Q 002435 669 LPSKYFQCW 677 (922)
Q Consensus 669 ip~~~~~~~ 677 (922)
+-..|+..|
T Consensus 455 Cql~Wl~qW 463 (873)
T KOG4194|consen 455 CQLKWLAQW 463 (873)
T ss_pred ccHHHHHHH
Confidence 887887665
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=335.26 Aligned_cols=476 Identities=28% Similarity=0.393 Sum_probs=377.0
Q ss_pred EEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEE
Q 002435 87 VIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLD 166 (922)
Q Consensus 87 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 166 (922)
+..+.+++|.+.-.. +.+.++..|.+|+++.|++. ++|++++.+..++.|+.++|.+ ..+|++++.+.+|+.|+
T Consensus 47 l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhcc---HhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence 567888888876542 27888999999999999985 5899999999999999999998 78999999999999999
Q ss_pred cCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeC
Q 002435 167 LSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDL 246 (922)
Q Consensus 167 Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 246 (922)
.++|.+ ..+++.++.+..|+.++..+|+++. .|+++.++.+|..+++.+|.+....|..+. |+.|++||.
T Consensus 121 ~s~n~~--------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNEL--------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC 190 (565)
T ss_pred ccccce--------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc
Confidence 999985 4566788999999999999999876 688899999999999999999955555444 999999999
Q ss_pred cCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc
Q 002435 247 SFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE 326 (922)
Q Consensus 247 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (922)
..|.++ .+|+.++.+.+|+.|++.+|++. ..| .|..+..|++|.++.|++.-........++++..||+.+|++. +
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c
Confidence 999876 78889999999999999999998 667 7999999999999999998444455568999999999999998 7
Q ss_pred ccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhc-cCCcceEe-------CcCccc-
Q 002435 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN-FKHLEHLS-------LSSNRL- 397 (922)
Q Consensus 327 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~-------Ls~n~l- 397 (922)
.|+.+.-+.+|++||+++|.+++ +|.+++++ +|+.|-+.+|.+. ++..+....+ -.-|++|. ++..+-
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 89999999999999999999994 77789999 9999999999886 2222211000 01122221 111110
Q ss_pred --c-----ccccccccCCCCccEEEecCCCCCCCcccccCCCC---ccEEECcCCCCCCCCCccccccCCCCccEEEccC
Q 002435 398 --S-----LFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY---LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSH 467 (922)
Q Consensus 398 --~-----~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~---L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~ 467 (922)
+ ...........+.+.|++++-+++.+|+....... ....+++.|++. .+|..+. .+..+.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~--~lkelv------ 414 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV--ELKELV------ 414 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhH--HHHHHH------
Confidence 0 00011122345778889999999999976544443 888999999997 6676544 222211
Q ss_pred CccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC
Q 002435 468 NFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP 547 (922)
Q Consensus 468 n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p 547 (922)
+.+.+++| ..+.+|..++. +++|..|+|++|-+. .+|
T Consensus 415 ----------------------------------------T~l~lsnn-~isfv~~~l~~-l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 415 ----------------------------------------TDLVLSNN-KISFVPLELSQ-LQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred ----------------------------------------HHHHhhcC-ccccchHHHHh-hhcceeeecccchhh-hcc
Confidence 11122222 22356677777 889999999999887 678
Q ss_pred chhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCC
Q 002435 548 QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLR 627 (922)
Q Consensus 548 ~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 627 (922)
..++.+. .|+.|++++|+|. .+|.....+..++.+-.++|++....|..+.++.+|++|||.+|.+. .+|..+++++
T Consensus 452 ~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 452 EEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred hhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 8888888 6999999999997 77888888888888888999999877777999999999999999998 7788999999
Q ss_pred CCCEEEcCCCccc
Q 002435 628 ELNVLILKSNKLH 640 (922)
Q Consensus 628 ~L~~L~L~~N~l~ 640 (922)
+|++|.+.+|+|.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-37 Score=322.66 Aligned_cols=390 Identities=24% Similarity=0.271 Sum_probs=280.8
Q ss_pred CCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCC
Q 002435 162 LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL 241 (922)
Q Consensus 162 L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 241 (922)
-+.||.+++.+..+ +...++..+ .+.-+.|++++|.++..-+..|.++++|+++++.+|.++ .+|...+...+|
T Consensus 54 ~~lldcs~~~lea~---~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 54 TRLLDCSDRELEAI---DKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred ceeeecCccccccc---cccccCCcC--ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 35688888875221 111111111 134567999999999999999999999999999999998 788877777889
Q ss_pred CEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeecc
Q 002435 242 MYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN 321 (922)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (922)
+.|+|.+|.|+..-.+.+..++.|+.|||+.|.|+..--..|..-.++++|+|++|.|+......|..+.+|..|.|+.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 99999999999888889999999999999999998555556777789999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc
Q 002435 322 DFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT 401 (922)
Q Consensus 322 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 401 (922)
+++...+..|.++++|+.|+|..|++.-..-..|.++++|+.|.+..|.+.. .....| ..+.++++|+|+.|+++.+.
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-L~DG~F-y~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-LDDGAF-YGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-ccCcce-eeecccceeecccchhhhhh
Confidence 9997777788889999999999999985545678999999999999999983 444445 68999999999999999999
Q ss_pred cccccCCCCccEEEecCCCCCCC-cccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCC
Q 002435 402 KAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFF 480 (922)
Q Consensus 402 ~~~~~~~~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 480 (922)
...+..+..|+.|++++|.|..+ ++....+++|++|+|++|+|+..-+..+. .+..|+.|+|++|.+..
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~-------- 355 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDH-------- 355 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccccchHH--------
Confidence 88777777777777777777744 34455666777777777777654444443 34444444444444321
Q ss_pred CCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCc---hhhhccCcc
Q 002435 481 PRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ---CLDNFSDHL 557 (922)
Q Consensus 481 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~---~l~~l~~~L 557 (922)
+....+..+++|++|||++|.++..+-+ .|.+++ +|
T Consensus 356 ----------------------------------------l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~L 394 (873)
T KOG4194|consen 356 ----------------------------------------LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-SL 394 (873)
T ss_pred ----------------------------------------HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch-hh
Confidence 1222222245555556655555543322 233333 45
Q ss_pred cEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435 558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611 (922)
Q Consensus 558 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 611 (922)
+.|++.+|++..+...+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+.
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 555555555554444455555555555555555554555555544 44444443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-39 Score=326.81 Aligned_cols=482 Identities=28% Similarity=0.358 Sum_probs=312.6
Q ss_pred CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCC
Q 002435 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT 239 (922)
Q Consensus 160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 239 (922)
..|+.|++++|.+ ..+.+.+.++..|.+|++++|++.. .|++++.+..++.++.++|.+. .+|+.++.+.
T Consensus 45 v~l~~lils~N~l--------~~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLILSHNDL--------EVLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred cchhhhhhccCch--------hhccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 4455566666543 2222344555555566665555543 4555666666666666666665 5566666666
Q ss_pred CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEee
Q 002435 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLA 319 (922)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (922)
+|..|+.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++....|..+. ++.|++++..
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence 6666666666665 44555666666666666666665 4555666666666666666666654444444 6666666666
Q ss_pred ccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccc
Q 002435 320 SNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSL 399 (922)
Q Consensus 320 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 399 (922)
.|.+. .+|..++.+.+|+-|++..|++. .+| .|.+|..|++++++.|.+. .+|.+.. .+++++..||+.+|+++.
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~-~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL-KHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh-cccccceeeecccccccc
Confidence 66554 55666666666666666666665 344 5666666666666666665 4444443 566666666666666666
Q ss_pred cccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEE-------ccCC---c
Q 002435 400 FTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLN-------LSHN---F 469 (922)
Q Consensus 400 ~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~-------L~~n---~ 469 (922)
.+.... -+.+|++|++++|.++.+|..++++ +|+.|-+.+|.+...--+.+..+.-.-|++|. ++.. .
T Consensus 267 ~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 267 VPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred CchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 655432 4556667777777777777777777 67777777777642211111100000111110 0000 0
Q ss_pred cccccCCCCCCCC---CCCCceEeccCccccCCCCCCC-----CCCceeeccCCcccCcCChhhhhcCCcc-ceEEccCc
Q 002435 470 LIGFYQHPMFFPR---NYDGFTLDLSYNYLQGPLPVPP-----PQTKHYLVSNNSLTGKIPFWICNSSNSL-EILDLSYN 540 (922)
Q Consensus 470 l~~~~~~~~~~~~---~~~l~~L~ls~n~l~~~~~~~~-----~~l~~L~ls~n~l~~~ip~~~~~~~~~L-~~L~Ls~N 540 (922)
-+........++. ....+.|+++.-+++..+...+ .-++..+++.|++. .+|..+.. +..+ +.+++++|
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn 422 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNN 422 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcC
Confidence 0000001111111 2234567777777776554322 23678889999988 78877766 3343 45666776
Q ss_pred cCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc
Q 002435 541 NLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP 620 (922)
Q Consensus 541 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 620 (922)
.+. -+|..++.++ +|..|+|++|-+. .+|..++.+..|+.||++.|++. ..|.++..+..|+.+-.++|++....|
T Consensus 423 ~is-fv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 423 KIS-FVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred ccc-cchHHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence 665 7788888888 7999999999887 78999999999999999999998 789999888999999999999998888
Q ss_pred hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChh
Q 002435 621 SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSK 672 (922)
Q Consensus 621 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 672 (922)
..+.++.+|++|+|.+|.+..+.|.- +++++|++|++++|+|. .|+.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~L---gnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPIL---GNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChhh---ccccceeEEEecCCccC--CCHH
Confidence 88999999999999999998775443 68999999999999997 6654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-36 Score=332.51 Aligned_cols=450 Identities=28% Similarity=0.346 Sum_probs=261.7
Q ss_pred CchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCC
Q 002435 207 IPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNL 286 (922)
Q Consensus 207 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 286 (922)
.|..+..+++|+.|.++.|.+. ..|.+..++.+|++|.|.+|.+. ..|..+..+.+|+.|+++.|.+. .+|..+..+
T Consensus 60 fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~l 136 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVL 136 (1081)
T ss_pred CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhh
Confidence 3444555555555555555555 44555666666666666666655 55666666666667777766665 566666666
Q ss_pred CCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEc
Q 002435 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEF 366 (922)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 366 (922)
+.++.+..++|.... .++... ++.+++..|.+.+.++..+..++. .|+|++|.+. . ..+..+++|+.+..
T Consensus 137 t~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHC 206 (1081)
T ss_pred hHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhh
Confidence 667777777662111 122222 666777777777766666666555 6788888776 1 24567777888888
Q ss_pred cCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCC
Q 002435 367 SHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446 (922)
Q Consensus 367 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~ 446 (922)
..|++... . -.-++|+.|+.++|.+...... ....++++++++.++++.+|+|+..+.+|+.++..+|.++
T Consensus 207 ~rn~ls~l-~-----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~- 277 (1081)
T KOG0618|consen 207 ERNQLSEL-E-----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV- 277 (1081)
T ss_pred hhcccceE-E-----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-
Confidence 87777622 1 2457788888888887733221 2356777778888888878888877888888877777774
Q ss_pred CCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhh
Q 002435 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC 526 (922)
Q Consensus 447 ~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~ 526 (922)
.+|..+. ...+|+.|...+|.+. .+|....
T Consensus 278 ~lp~ri~--~~~~L~~l~~~~nel~------------------------------------------------yip~~le 307 (1081)
T KOG0618|consen 278 ALPLRIS--RITSLVSLSAAYNELE------------------------------------------------YIPPFLE 307 (1081)
T ss_pred hhHHHHh--hhhhHHHHHhhhhhhh------------------------------------------------hCCCccc
Confidence 4444433 3444444444444332 2232222
Q ss_pred hcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc
Q 002435 527 NSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606 (922)
Q Consensus 527 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 606 (922)
. .++|+.|||..|++....+..+.....+|..|+.+.|++....-..=...+.|+.|++.+|.++...-..+.+..+|+
T Consensus 308 ~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 308 G-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred c-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 2 456777777777776332222222222355555566665532211112234455555555555554444555555555
Q ss_pred EEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccc
Q 002435 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTS 686 (922)
Q Consensus 607 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~ 686 (922)
+|+|++|++.......+.+ ++.|+.|+||+|+++ .+|.. ...|
T Consensus 387 VLhLsyNrL~~fpas~~~k--------------------------le~LeeL~LSGNkL~-~Lp~t-va~~--------- 429 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRK--------------------------LEELEELNLSGNKLT-TLPDT-VANL--------- 429 (1081)
T ss_pred eeeecccccccCCHHHHhc--------------------------hHHhHHHhcccchhh-hhhHH-HHhh---------
Confidence 5555555555333333444 444555555555554 34422 1112
Q ss_pred cccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccc
Q 002435 687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH 766 (922)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 766 (922)
..|++|...+|++. ..| ++.+++.|+.+|+|.|+|+
T Consensus 430 ------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 430 ------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred ------------------------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 22444555566666 556 7778888888888888887
Q ss_pred cc-CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 002435 767 GH-ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNN 811 (922)
Q Consensus 767 ~~-ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N 811 (922)
.. +|..... ++|++|||++|.=.-.-...|..+..+..+++.-|
T Consensus 466 ~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 466 EVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 54 3443333 68888888888743344455666777777777766
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-35 Score=327.36 Aligned_cols=471 Identities=27% Similarity=0.324 Sum_probs=260.0
Q ss_pred cccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHH
Q 002435 107 LFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNL 186 (922)
Q Consensus 107 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~ 186 (922)
+..-..++.|+++.|.+.... -+.+.+.-+|+.||+++|.+ +..|..+..+.+|+.|+++.|.| ..+|..
T Consensus 17 i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i--------~~vp~s 86 (1081)
T KOG0618|consen 17 ILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYI--------RSVPSS 86 (1081)
T ss_pred hccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhH--------hhCchh
Confidence 333344666666666553221 13334444466666666665 55666666666666666666654 333455
Q ss_pred HhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCc
Q 002435 187 VKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266 (922)
Q Consensus 187 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 266 (922)
..++.+|+++.|.+|.+.. .|..+..+.+|+.|+++.|.+. .+|..+..++.++.++.++|.... .++... ++
T Consensus 87 ~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik 159 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IK 159 (1081)
T ss_pred hhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-ch
Confidence 5666666666666665443 5666666666666666666665 556666666666666666662211 122222 66
Q ss_pred EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc
Q 002435 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346 (922)
Q Consensus 267 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 346 (922)
.+++..|.+.+.++..+..+.. .|+|.+|.+. ...+..+.+|+.+....|.+... --.-++|+.|+.++|.
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCc
Confidence 6666666666666655555555 5666666655 22345556666666666665421 1123566666666666
Q ss_pred cCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc
Q 002435 347 FSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN 426 (922)
Q Consensus 347 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~ 426 (922)
++...+ -....+|++++++.|+++ .+| ++ ...+.+|+.+++.+|++..++...+ ...+|+.+.+..|.+..+|.
T Consensus 231 l~~~~~--~p~p~nl~~~dis~n~l~-~lp-~w-i~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~ 304 (1081)
T KOG0618|consen 231 LTTLDV--HPVPLNLQYLDISHNNLS-NLP-EW-IGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPP 304 (1081)
T ss_pred ceeecc--ccccccceeeecchhhhh-cch-HH-HHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCC
Confidence 652221 123345666677766666 334 22 2566667777777766655544333 45667777777777777777
Q ss_pred cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506 (922)
Q Consensus 427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~ 506 (922)
.....++|++|+|..|++. ..|+.+.......+..|+.+.|++....
T Consensus 305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp-------------------------------- 351 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP-------------------------------- 351 (1081)
T ss_pred cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc--------------------------------
Confidence 7777777777777777775 3444332111122344444444332211
Q ss_pred CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEec
Q 002435 507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586 (922)
Q Consensus 507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 586 (922)
..-....+.|+.|++.+|.++...-..+.++. .|+.|+|++|++.......+.++..|++|+|
T Consensus 352 ----------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 352 ----------------SYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred ----------------cccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 11111134455555555555554444444444 4666666666555444444555556666666
Q ss_pred CCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664 (922)
Q Consensus 587 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~ 664 (922)
|+|+++ .+|.++.++..|++|...+|++. ..| .+..++.|+++|++.|+++...-.... ..++|++||+++|.
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNT 487 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC--CCcccceeeccCCc
Confidence 666665 44555666666666666666655 344 555566666666666665544322221 12556666666665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-33 Score=297.60 Aligned_cols=375 Identities=29% Similarity=0.393 Sum_probs=216.6
Q ss_pred ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435 108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV 187 (922)
Q Consensus 108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~ 187 (922)
+-++..+-.|+++|.|+|+.+|.....++.++.|.|....+ ..+|..++.|.+|++|.+++|++. .+...+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~--------~vhGEL 74 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI--------SVHGEL 74 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH--------hhhhhh
Confidence 34566777888888888888898888999999999988887 678999999999999999998752 223344
Q ss_pred hcCCCCCEEEcCCCcCC-CCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCc
Q 002435 188 KKLTNLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLK 266 (922)
Q Consensus 188 ~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 266 (922)
+.++.|+.+.+..|++. .-+|..+-.+..|+.||||+|++. ..|..+..-+++-.|+||+|+|..+....|.++..|-
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 55555555555555543 224444555555555555555555 4455555555555555555555433333444455555
Q ss_pred EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc
Q 002435 267 RLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK 346 (922)
Q Consensus 267 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 346 (922)
.|||++|++. .+|..+..+.+|++|+|++| .+....-..+..+++|+.|.+++.+
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N------------------------PL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN------------------------PLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCC------------------------hhhHHHHhcCccchhhhhhhccccc
Confidence 5555555554 34444444555555555554 4432222233345566666666654
Q ss_pred cC-ccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435 347 FS-SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP 425 (922)
Q Consensus 347 l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp 425 (922)
-+ ..+|.++..+.+|..+|++.|++. .+|
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp--------------------------------------------------~vP 238 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLP--------------------------------------------------IVP 238 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCC--------------------------------------------------cch
Confidence 33 346666767777777777666554 123
Q ss_pred ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435 426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP 505 (922)
Q Consensus 426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~ 505 (922)
+.+.++++|+.|+||+|+|+..-. ... .
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~-~~~--~------------------------------------------------- 266 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNM-TEG--E------------------------------------------------- 266 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeec-cHH--H-------------------------------------------------
Confidence 333444445555555554441100 000 1
Q ss_pred CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCccc-CCCcccccCCCCccEE
Q 002435 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFC-GSIPQTFLSGRSLMMI 584 (922)
Q Consensus 506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L 584 (922)
..+|+.|++|.|+++ .+|++++.++ .|+.|++.+|+++ .-+|..++.+.+|+++
T Consensus 267 -----------------------W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 267 -----------------------WENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred -----------------------Hhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 224455555555554 4455555555 4555555555553 2345566666666666
Q ss_pred ecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCC
Q 002435 585 DLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP 646 (922)
Q Consensus 585 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 646 (922)
..++|.+. ..|+.+..|..|+.|.|+.|++. ..|.++.-++.|++|+++.|.---+.|.+
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 66666665 56666666666666666666665 45666666666666666666655444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-31 Score=283.37 Aligned_cols=365 Identities=25% Similarity=0.365 Sum_probs=263.3
Q ss_pred CCCCCEEEcCCCcCC-CCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435 190 LTNLKELALGGVTIS-SPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268 (922)
Q Consensus 190 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 268 (922)
++-.+-.++++|.++ +..|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++.. +-..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence 445566777888877 456777777888888888777776 677778888888888888887763 33556777778888
Q ss_pred EcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCcc
Q 002435 269 DISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKF 347 (922)
Q Consensus 269 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 347 (922)
.+..|++.. -+|..+.++..|..|||++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|||++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 888777653 36777777777778888887776 4566676777777777777777643334455667777777777777
Q ss_pred CccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCc
Q 002435 348 SSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFP 425 (922)
Q Consensus 348 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp 425 (922)
. .+|+.+..+..|++|+|++|.+.- . -+..+| .+.+|+.|.+++.+-+ .+|
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~h----f-QLrQLP---------------------smtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNH----F-QLRQLP---------------------SMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhH----H-HHhcCc---------------------cchhhhhhhcccccchhhcCC
Confidence 6 455566666677777777665431 0 001111 2233344444444333 455
Q ss_pred ccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435 426 NFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP 505 (922)
Q Consensus 426 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~ 505 (922)
..+..+.+|..+|+|.|.+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp------------------------------------------------------------ 235 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP------------------------------------------------------------ 235 (1255)
T ss_pred CchhhhhhhhhccccccCCC------------------------------------------------------------
Confidence 55555555555555555543
Q ss_pred CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585 (922)
Q Consensus 506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 585 (922)
.+|..+.+ +.+|+.|+||+|.|+ .+..+...+. +|++|++|+|+++ .+|+++..++.|+.|.
T Consensus 236 --------------~vPecly~-l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 236 --------------IVPECLYK-LRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred --------------cchHHHhh-hhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 34455555 677888888888887 3445666676 7999999999998 8899999999999999
Q ss_pred cCCCcccc-cCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435 586 LSDNLLQG-RIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664 (922)
Q Consensus 586 Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~ 664 (922)
+.+|+++- -+|+.++.+.+|+++..++|++. ..|..+..|..|+.|.|++|++... |+.+ .-++.|..||+..|+
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaI--HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAI--HLLPDLKVLDLRENP 373 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhh--hhcCCcceeeccCCc
Confidence 99999863 48999999999999999999998 8999999999999999999999865 4444 447899999999997
Q ss_pred CC
Q 002435 665 FT 666 (922)
Q Consensus 665 l~ 666 (922)
=-
T Consensus 374 nL 375 (1255)
T KOG0444|consen 374 NL 375 (1255)
T ss_pred Cc
Confidence 43
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-27 Score=239.81 Aligned_cols=302 Identities=18% Similarity=0.205 Sum_probs=176.6
Q ss_pred CCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC-CCCcCccchhhhhhccCCcceE
Q 002435 312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH-NNFSGPIDLDMFLVNFKHLEHL 390 (922)
Q Consensus 312 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L 390 (922)
.-.+++|..|.|+...+..|+.+++|+.|||++|+|+.+-|.+|.+++++.+|-+.+ |+++ .++...| .++..|+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F-~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF-GGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh-hhHHHHHHH
Confidence 344555556665555555555556666666666666555555555555555544444 4444 4444444 555555555
Q ss_pred eCcCccccccccccccCCCCccEEEecCCCCCCCcc-cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCc
Q 002435 391 SLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469 (922)
Q Consensus 391 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~ 469 (922)
.+.-|++.-+...+|..++++..|.+.+|.+..++. .+..+ ..++.+.+..|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l--------------------------~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL--------------------------AAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch--------------------------hccchHhhhcCc
Confidence 555555555555555555555555555554444443 33333 444444444444
Q ss_pred cccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCch
Q 002435 470 LIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQC 549 (922)
Q Consensus 470 l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 549 (922)
+......++... + +.-+ |..... .....-..+.+.++..+-+..
T Consensus 200 ~icdCnL~wla~--------~---------------------~a~~------~ietsg-arc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 200 FICDCNLPWLAD--------D---------------------LAMN------PIETSG-ARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred cccccccchhhh--------H---------------------Hhhc------hhhccc-ceecchHHHHHHHhcccchhh
Confidence 322111110000 0 0000 000000 111222233344444443444
Q ss_pred hhhccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCC
Q 002435 550 LDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRE 628 (922)
Q Consensus 550 l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 628 (922)
|....+.+..-..+.+...++.| ..|..+++|++|+|++|+|+++-+.+|.++..++.|.|..|+|...-...|.++..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 43322222222223333333444 46888999999999999999998999999999999999999998877888999999
Q ss_pred CCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435 629 LNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA 679 (922)
Q Consensus 629 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~ 679 (922)
|++|+|.+|+|+...|..+ ..+.+|..|+|-.|+|.|.+-..|+..|-.
T Consensus 324 L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred ceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHHHHHh
Confidence 9999999999998877665 567889999999999999998888887743
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1e-21 Score=247.07 Aligned_cols=359 Identities=23% Similarity=0.272 Sum_probs=276.1
Q ss_pred CcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCCcCchhhcC
Q 002435 85 GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFIC-----SEIPPEIINLS-RLSYLNLSSAGFFGQIPSEILE 158 (922)
Q Consensus 85 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~ 158 (922)
.+|+.+.+.-..+....-...+|..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+ ..+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C
Confidence 45666555433333221122468889999999997654321 13677777764 599999999987 6778777 5
Q ss_pred CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCC
Q 002435 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNL 238 (922)
Q Consensus 159 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 238 (922)
..+|++|++++|++. .++..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++++
T Consensus 610 ~~~L~~L~L~~s~l~--------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQGSKLE--------KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred ccCCcEEECcCcccc--------ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence 789999999999863 3445567899999999999876566664 8889999999999998777899999999
Q ss_pred CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318 (922)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (922)
++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|+.|.+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 999999999987666777665 7899999999999766666643 468999999999987 455444 5788888888
Q ss_pred eccCCC-------CcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEe
Q 002435 319 ASNDFS-------GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS 391 (922)
Q Consensus 319 ~~n~l~-------~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 391 (922)
.++... ...+......++|++|++++|...+.+|..++++++|+.|++++|...+.+|.. ..+++|+.|+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~ 831 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLD 831 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEE
Confidence 774421 111222334578999999999888889999999999999999998766566644 2689999999
Q ss_pred CcCccc-cccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCc
Q 002435 392 LSSNRL-SLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNF 469 (922)
Q Consensus 392 Ls~n~l-~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~ 469 (922)
+++|.. ..++. ...+++.|++++|.++.+|.++..+++|+.|++++|.-...+|.... .+++|+.+++++|.
T Consensus 832 Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCCc
Confidence 999853 33222 24689999999999999999999999999999999665555666555 77888888888774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5.2e-21 Score=240.72 Aligned_cols=345 Identities=21% Similarity=0.282 Sum_probs=200.5
Q ss_pred cccCCCCCCCEEeCcCCC------CCCCcccccCCCC-CCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc
Q 002435 233 SLLGNLTKLMYLDLSFNN------LLGELPTSIGNLD-CLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH 305 (922)
Q Consensus 233 ~~l~~l~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 305 (922)
.+|.+|++|+.|.+..+. +...+|+.+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. ..+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 445666666666665442 2223455555543 4777777777665 556555 4567777777777765 3455
Q ss_pred cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccC
Q 002435 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK 385 (922)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 385 (922)
.+..+++|+.++|+++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|.. .+++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCC
Confidence 566777777777777654445554 666777777777777666667777777777888888776554455532 2466
Q ss_pred CcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEc
Q 002435 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL 465 (922)
Q Consensus 386 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L 465 (922)
+|+.|++++|......+. ...+|+.|++++|.+..+|..+ .+++|++|++.++...
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~-------------------- 760 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE-------------------- 760 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchh--------------------
Confidence 677777766642211111 1234455555555555444432 2344444444432211
Q ss_pred cCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC
Q 002435 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545 (922)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~ 545 (922)
...... ..+.......+++++.|++++|...+.+|..+.. +++|+.|++++|..-+.
T Consensus 761 ------~l~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 761 ------KLWERV----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLET 817 (1153)
T ss_pred ------hccccc----------------cccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCe
Confidence 000000 0000000112345666666666666667776665 77777777777654445
Q ss_pred CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC-cCccCcchhhc
Q 002435 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN-QISGTFPSWLG 624 (922)
Q Consensus 546 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~ 624 (922)
+|..+ .++ +|+.|++++|..-..+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+.
T Consensus 818 LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~ 890 (1153)
T PLN03210 818 LPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNIS 890 (1153)
T ss_pred eCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccc
Confidence 66554 344 6777777776544444432 356777777777776 45667777777777777774 344 4555666
Q ss_pred CCCCCCEEEcCCCc
Q 002435 625 TLRELNVLILKSNK 638 (922)
Q Consensus 625 ~l~~L~~L~L~~N~ 638 (922)
.+++|+.+++++|.
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 67777777776664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=227.85 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=46.1
Q ss_pred ceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 002435 731 LTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSN 810 (922)
Q Consensus 731 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~ 810 (922)
|+.|+|++|+|++ +|... ++|+.|++++|+|++ +|... ..|+.|+|++|+|+ .+|..+.+++.|+.|++++
T Consensus 384 L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 4556666666653 44322 355666666666664 44322 34556666666666 4566666666666666666
Q ss_pred CccccCCCC
Q 002435 811 NNLTGPIPQ 819 (922)
Q Consensus 811 N~lsg~iP~ 819 (922)
|+|+|.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 666666554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-24 Score=221.15 Aligned_cols=276 Identities=21% Similarity=0.208 Sum_probs=182.2
Q ss_pred CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcC-CCCCCCcccccCCCCCCcEEEccc
Q 002435 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSF-NNLLGELPTSIGNLDCLKRLDISW 272 (922)
Q Consensus 194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~ 272 (922)
.+++|..|+|+...+.+|+.+++|+.|||++|+|+.+-|.+|.++++|..|-+-+ |+|+......|+++..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3555666666666677777777888888888887777777777777776665544 777766667777788888888777
Q ss_pred CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC------------cccccccCCCCCceE
Q 002435 273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG------------ELPASFGNLRSLEGL 340 (922)
Q Consensus 273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L 340 (922)
|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+.. ..|..++...-..-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 77776667777778888888888877775544567777777777777776321 112222222222222
Q ss_pred ecCCCccCccCchhhcC-CCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCC
Q 002435 341 DISECKFSSQIPSSLRN-LAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSC 419 (922)
Q Consensus 341 ~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~ 419 (922)
.+.+.++...-+..+.. +..+..=..+.+...+.-|...| ..+++|+.|++++|+++.+.+.+|.....++.|.|..|
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH-hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 33333333222221111 11111111222333334444444 78888888888888888888888888888888888888
Q ss_pred CCCCCcc-cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCcccc
Q 002435 420 NLNEFPN-FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472 (922)
Q Consensus 420 ~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~ 472 (922)
++..+.. .+..+..|+.|+|++|+|+...|..|. .+..|.+|++-.|++..
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccC
Confidence 8876654 567788888888888888877777776 67788888888887654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.6e-21 Score=224.99 Aligned_cols=186 Identities=27% Similarity=0.363 Sum_probs=117.2
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
+|+.|++++|+++. +|.. +++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|++|+|
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdL 349 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSV 349 (788)
T ss_pred hcCEEECcCCcccc-cccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEec
Confidence 45556666666653 3321 1256666666666664 2321 2345666666666663 3321 135677777
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 690 (922)
++|+|++ +|.. .++|+.|++++|++++. |.. ..+|+.|++++|++++ +|..
T Consensus 350 S~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt~-LP~l------------------ 400 (788)
T PRK15387 350 SDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLTS-LPVL------------------ 400 (788)
T ss_pred CCCccCC-CCCC---CcccceehhhccccccC-ccc-----ccccceEEecCCcccC-CCCc------------------
Confidence 7777764 3332 24566677777777653 321 2457788888887762 3421
Q ss_pred cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770 (922)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip 770 (922)
++.|+.|++++|+|++ +|... .+|+.|+|++|+|+ .+|
T Consensus 401 -------------------------------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP 438 (788)
T PRK15387 401 -------------------------------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLP 438 (788)
T ss_pred -------------------------------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccC
Confidence 2346778888888874 66533 45778888888888 578
Q ss_pred ccccCCCCCCEEeCCCCcCcccCcccccCC
Q 002435 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDL 800 (922)
Q Consensus 771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L 800 (922)
..+.+++.|+.|+|++|.|+|.+|..+..+
T Consensus 439 ~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 888888889999999999988888877544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.2e-19 Score=210.69 Aligned_cols=243 Identities=23% Similarity=0.358 Sum_probs=151.6
Q ss_pred eEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcc
Q 002435 488 TLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF 567 (922)
Q Consensus 488 ~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l 567 (922)
.|+++++.++..+...++.++.|++++|.++ .+|..++ ++|+.|++++|+++ .+|..+. .+|+.|+|++|.+
T Consensus 182 ~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L 253 (754)
T PRK15370 182 ELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRI 253 (754)
T ss_pred EEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh---ccccEEECcCCcc
Confidence 4444444444433334456677777777766 4565543 36777777777776 3455443 2577777777777
Q ss_pred cCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435 568 CGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647 (922)
Q Consensus 568 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 647 (922)
+ .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.. |...
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l 323 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL 323 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc
Confidence 6 4455443 46777777777777 3455443 467777777777774 343332 3577777777777653 3222
Q ss_pred CCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccc
Q 002435 648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727 (922)
Q Consensus 648 ~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 727 (922)
.++|+.|++++|.+++ +|..+
T Consensus 324 ----~~sL~~L~Ls~N~Lt~-LP~~l------------------------------------------------------ 344 (754)
T PRK15370 324 ----PPGLKTLEAGENALTS-LPASL------------------------------------------------------ 344 (754)
T ss_pred ----cccceeccccCCcccc-CChhh------------------------------------------------------
Confidence 2567777777777663 44221
Q ss_pred cccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCccc----ccCCCCC
Q 002435 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQ----LVDLTFL 803 (922)
Q Consensus 728 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~----l~~L~~L 803 (922)
++.|+.|+|++|+|+ .+|..+. +.|+.|+|++|+|++ +|..+. ..|+.|++++|+|++ +|.. +..++.+
T Consensus 345 ~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l 417 (754)
T PRK15370 345 PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQP 417 (754)
T ss_pred cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCc
Confidence 235777788888877 4666553 577888888888874 455444 267778888888774 3443 3445777
Q ss_pred CeEeccCCccc
Q 002435 804 EFFNVSNNNLT 814 (922)
Q Consensus 804 ~~L~ls~N~ls 814 (922)
..+++.+|+++
T Consensus 418 ~~L~L~~Npls 428 (754)
T PRK15370 418 TRIIVEYNPFS 428 (754)
T ss_pred cEEEeeCCCcc
Confidence 78888888776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1e-18 Score=205.18 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=26.7
Q ss_pred ccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435 411 FNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471 (922)
Q Consensus 411 L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~ 471 (922)
...|++++++++.+|..+ .+.|+.|++++|+++ .+|..+. .+|+.|++++|.++
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLT 233 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccc
Confidence 344555555555555433 234666666666665 3343321 34555555555443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=7.7e-19 Score=192.43 Aligned_cols=256 Identities=22% Similarity=0.209 Sum_probs=129.3
Q ss_pred eeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCC
Q 002435 116 LDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLT 191 (922)
Q Consensus 116 L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~ 191 (922)
|+|+.+.+.+...+..+..+++|++|+++++.+++. ++..+...++|++|+++++.+... ......++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHHHHHHHHHHhcC
Confidence 444455544343444455555566666666655332 344444555566666666543210 000122334555566
Q ss_pred CCCEEEcCCCcCCCCCchhccCCCC---CCEEeccCccCCc----cCccccCCC-CCCCEEeCcCCCCCCC----ccccc
Q 002435 192 NLKELALGGVTISSPIPHSLANLSS---LTLLSLSGCELRG----RIPSLLGNL-TKLMYLDLSFNNLLGE----LPTSI 259 (922)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l 259 (922)
+|++|++++|.+.+..+..+..+.. |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6666666666665544444444433 6666666666652 222334445 6666666666666532 22344
Q ss_pred CCCCCCcEEEcccCCCCCC----chhhhhCCCCCCEEEccCCCCCCCCc----ccccCCCCCcEEEeeccCCCCcccccc
Q 002435 260 GNLDCLKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFRGKTP----HSMGNFTRLYWLSLASNDFSGELPASF 331 (922)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~l 331 (922)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5556666666666666532 23334445566666666666553222 223344555555555555543211111
Q ss_pred c-----CCCCCceEecCCCccCc----cCchhhcCCCCccEEEccCCCCc
Q 002435 332 G-----NLRSLEGLDISECKFSS----QIPSSLRNLAQLKFLEFSHNNFS 372 (922)
Q Consensus 332 ~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 372 (922)
. ..+.|++|++++|.++. .+...+..+++|+++++++|.+.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1 12455566665555541 12233344455555555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.2e-18 Score=188.89 Aligned_cols=230 Identities=23% Similarity=0.266 Sum_probs=130.9
Q ss_pred EEECCCCCCC-CcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC------CCchhcc
Q 002435 140 YLNLSSAGFF-GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS------PIPHSLA 212 (922)
Q Consensus 140 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~ 212 (922)
.|+|..+.+. ...+..+..+++|++|+++++.+... ....++..+...+++++++++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~---~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEE---AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHH---HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 4677777776 34455566777889999988875321 113456667777788888888877652 2234566
Q ss_pred CCCCCCEEeccCccCCccCccccCCCCC---CCEEeCcCCCCCCC----cccccCCC-CCCcEEEcccCCCCCC----ch
Q 002435 213 NLSSLTLLSLSGCELRGRIPSLLGNLTK---LMYLDLSFNNLLGE----LPTSIGNL-DCLKRLDISWNELSGE----LP 280 (922)
Q Consensus 213 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~~ 280 (922)
.+++|++|++++|.+.+..+..+..+.+ |++|++++|++++. +...+..+ ++|+.|++++|.+++. ++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 6777777777777776544444444433 77777777766531 22334455 6677777777776632 23
Q ss_pred hhhhCCCCCCEEEccCCCCCCCC----cccccCCCCCcEEEeeccCCCCc----ccccccCCCCCceEecCCCccCccCc
Q 002435 281 ASIGNLASLEQLELSLNRFRGKT----PHSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQIP 352 (922)
Q Consensus 281 ~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~ 352 (922)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 34455566666666666665321 12233445666666666655432 22233445555555555555553221
Q ss_pred hhhc-----CCCCccEEEccCCCCc
Q 002435 353 SSLR-----NLAQLKFLEFSHNNFS 372 (922)
Q Consensus 353 ~~l~-----~l~~L~~L~L~~n~l~ 372 (922)
..+. ..+.|+.|++++|.++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCC
Confidence 1111 1245555555555544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=4.9e-16 Score=182.43 Aligned_cols=118 Identities=39% Similarity=0.675 Sum_probs=105.6
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls 809 (922)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCC--CCCCCccccCCCcCCCCCCCCCCCC
Q 002435 810 NNNLTGPIPQGNQ--FPTFDKTSFNGNLGLCGKPLPKECE 847 (922)
Q Consensus 810 ~N~lsg~iP~~~~--~~~~~~~s~~gn~~lcg~~~~~~c~ 847 (922)
+|+++|.+|.... +.......+.+|+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997521 2233456789999999977555563
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.8e-17 Score=147.95 Aligned_cols=158 Identities=31% Similarity=0.507 Sum_probs=103.5
Q ss_pred ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
.+..+.+.+.|.||.|+++ .+|+.|..+.+|++|++++|++ ..+|.+++.+++|+.|+++-|++
T Consensus 28 gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl------------- 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL------------- 91 (264)
T ss_pred cccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh-------------
Confidence 4556666777777777764 2566666777777777776666 55666666666666666666552
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDC 264 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 264 (922)
...|..|+.++.|+.|||.+|.+. ..+|..|..++.|+.|+|+.|.+. .+|..++++++
T Consensus 92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 124666777777777777777665 345666666777777777777765 56666777777
Q ss_pred CcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435 265 LKRLDISWNELSGELPASIGNLASLEQLELSLNRFR 300 (922)
Q Consensus 265 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 300 (922)
|+.|.+..|.+. .+|..++.++.|++|.+.+|+++
T Consensus 152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 777777776665 45666666666666666666665
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=7.4e-17 Score=146.10 Aligned_cols=159 Identities=31% Similarity=0.554 Sum_probs=98.5
Q ss_pred CCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEccc
Q 002435 193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISW 272 (922)
Q Consensus 193 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 272 (922)
+..|.+++|+++. +|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus 35 ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 3334444444433 3445666666666666666666 45666666666666666666665 5566666666666666666
Q ss_pred CCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccC
Q 002435 273 NELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQI 351 (922)
Q Consensus 273 n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 351 (922)
|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++ .+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vl 188 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VL 188 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ec
Confidence 66643 35666666666666666666665 55566666666666666666655 56666666667777777777666 34
Q ss_pred chhhcC
Q 002435 352 PSSLRN 357 (922)
Q Consensus 352 ~~~l~~ 357 (922)
|+.++.
T Consensus 189 ppel~~ 194 (264)
T KOG0617|consen 189 PPELAN 194 (264)
T ss_pred Chhhhh
Confidence 444444
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=6.9e-13 Score=156.03 Aligned_cols=127 Identities=33% Similarity=0.486 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCC----ccccceEecCC--C--CcEEEEECCCC
Q 002435 24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDC----CLWDGVECNEN--T--GHVIKLDLSNS 95 (922)
Q Consensus 24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----c~w~gv~c~~~--~--~~v~~L~L~~~ 95 (922)
..+.++|.+||+++|+.+..+. ..+|.. ..| |.|.||.|... . ..|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--------------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--------------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--------------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCC
Confidence 4567789999999999886532 136753 233 27999999532 1 24888888888
Q ss_pred CCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCC
Q 002435 96 CLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNS 171 (922)
Q Consensus 96 ~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 171 (922)
.+.|.++. .+..+++|+.|+|++|.+.+. +|+.++.+++|++|+|++|.+.|.+|..++++++|++|+|++|.
T Consensus 429 ~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 429 GLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 88776554 566666666666666666544 55556666666666666666666666555555555555555554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.3e-11 Score=125.59 Aligned_cols=192 Identities=20% Similarity=0.251 Sum_probs=90.4
Q ss_pred cCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh-------------ccCCCCCCEEecc
Q 002435 157 LELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS-------------LANLSSLTLLSLS 223 (922)
Q Consensus 157 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------l~~l~~L~~L~Ls 223 (922)
..+++|++||||.|-+..-. ...+...+..++.|++|.|.+|.+.-..-.. .+.-+.|+++...
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g---~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKG---IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred hcCCceeEeeccccccCccc---hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34556666666666532111 1233345566666666666666654221111 2223445555555
Q ss_pred CccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC----CchhhhhCCCCCCEEEccCCCC
Q 002435 224 GCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG----ELPASIGNLASLEQLELSLNRF 299 (922)
Q Consensus 224 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l 299 (922)
.|++...-.. .+...|...+.|+.+.+..|.|.. .+...+..+++|+.|||.+|.+
T Consensus 166 rNrlen~ga~--------------------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 166 RNRLENGGAT--------------------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ccccccccHH--------------------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 5544321110 011223334444444444444321 1223344555555555555554
Q ss_pred CCCC----cccccCCCCCcEEEeeccCCCCccccc----c-cCCCCCceEecCCCccCcc----CchhhcCCCCccEEEc
Q 002435 300 RGKT----PHSMGNFTRLYWLSLASNDFSGELPAS----F-GNLRSLEGLDISECKFSSQ----IPSSLRNLAQLKFLEF 366 (922)
Q Consensus 300 ~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~----l-~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L 366 (922)
+... ...+..+++|+.+++++|.+...-... + ...|+|+.|.+.+|.++.. +...+...+.|..|++
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 4221 123344455555555555554322111 1 1246677777777766532 2223445677777777
Q ss_pred cCCCC
Q 002435 367 SHNNF 371 (922)
Q Consensus 367 ~~n~l 371 (922)
++|.+
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 77777
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.3e-10 Score=131.05 Aligned_cols=179 Identities=36% Similarity=0.479 Sum_probs=99.1
Q ss_pred CCccEEecCCCcccccCCccccCCC-CCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccE
Q 002435 579 RSLMMIDLSDNLLQGRIPRSLVNCS-SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRI 657 (922)
Q Consensus 579 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 657 (922)
+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|++....+.. ...+.|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLL---SNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhh---hhhhhhhh
Confidence 44555555555554 2333333332 5555555555555 23344555555555555555555443221 13455666
Q ss_pred EEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEec
Q 002435 658 IDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILS 737 (922)
Q Consensus 658 LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 737 (922)
|++++|++. .+|... . .+..++.|+++
T Consensus 191 L~ls~N~i~-~l~~~~-~---------------------------------------------------~~~~L~~l~~~ 217 (394)
T COG4886 191 LDLSGNKIS-DLPPEI-E---------------------------------------------------LLSALEELDLS 217 (394)
T ss_pred eeccCCccc-cCchhh-h---------------------------------------------------hhhhhhhhhhc
Confidence 666666665 333220 0 01235555666
Q ss_pred cccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435 738 SNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI 817 (922)
Q Consensus 738 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i 817 (922)
+|.+. .++..+.++..+..|.+++|++... +..++.+..++.|++++|.++...+ ++.+..|+.|++++|.++...
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 66433 3455566666666677777776643 5566667777777777777775433 667777777777777777666
Q ss_pred CC
Q 002435 818 PQ 819 (922)
Q Consensus 818 P~ 819 (922)
|.
T Consensus 294 ~~ 295 (394)
T COG4886 294 PL 295 (394)
T ss_pred hh
Confidence 54
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=5.4e-11 Score=121.19 Aligned_cols=247 Identities=23% Similarity=0.264 Sum_probs=129.3
Q ss_pred ccccCCCCCCEEECCCCCCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC
Q 002435 130 PEIINLSRLSYLNLSSAGFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS 205 (922)
Q Consensus 130 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~ 205 (922)
+.+..+..+++++||+|.+... +...+.+.++|+..++|.-..... ...+|..+.-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~----~~Ei~e~L~~---------------- 83 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL----KDEIPEALKM---------------- 83 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc----HHHHHHHHHH----------------
Confidence 3456677888888888887432 334555667777777765421000 0112211100
Q ss_pred CCchhccCCCCCCEEeccCccCCccCccc----cCCCCCCCEEeCcCCCCCCCc-------------ccccCCCCCCcEE
Q 002435 206 PIPHSLANLSSLTLLSLSGCELRGRIPSL----LGNLTKLMYLDLSFNNLLGEL-------------PTSIGNLDCLKRL 268 (922)
Q Consensus 206 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~-------------~~~l~~l~~L~~L 268 (922)
+.+++..+++|++|+||+|.+....+.. +.+++.|++|.|.+|.+.-.- ....+.-++|+++
T Consensus 84 -l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 84 -LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred -HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 1123334455555555555554332222 244566666666666553111 1123344678888
Q ss_pred EcccCCCCCC----chhhhhCCCCCCEEEccCCCCCCCCc----ccccCCCCCcEEEeeccCCCCc----ccccccCCCC
Q 002435 269 DISWNELSGE----LPASIGNLASLEQLELSLNRFRGKTP----HSMGNFTRLYWLSLASNDFSGE----LPASFGNLRS 336 (922)
Q Consensus 269 ~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~ 336 (922)
...+|++... +...|...+.|+.+.++.|.+..... ..+..+++|+.|||.+|.++.. +...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 8888877632 33456667788888888877653222 3455667777777777766532 2334455566
Q ss_pred CceEecCCCccCccCchhh-----cCCCCccEEEccCCCCcCcc--chhhhhhccCCcceEeCcCccc
Q 002435 337 LEGLDISECKFSSQIPSSL-----RNLAQLKFLEFSHNNFSGPI--DLDMFLVNFKHLEHLSLSSNRL 397 (922)
Q Consensus 337 L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~n~l 397 (922)
|++|++++|.+...-..++ ...|+|+.|.+.+|.++..- .........+.|+.|+|++|++
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666666653322221 23456666666666554211 0111112345555555555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.2e-10 Score=129.26 Aligned_cols=183 Identities=40% Similarity=0.571 Sum_probs=97.8
Q ss_pred ccCCCCCCEEECCCCCCCCcCchhhcCCC-CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435 132 IINLSRLSYLNLSSAGFFGQIPSEILELS-NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210 (922)
Q Consensus 132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~ 210 (922)
+..++.++.|++.+|.+ ..+|+..+.+. +|+.|++++|++ ..+|..+..+++|+.|++++|++.. +|..
T Consensus 112 ~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i--------~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~ 181 (394)
T COG4886 112 LLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKI--------ESLPSPLRNLPNLKNLDLSFNDLSD-LPKL 181 (394)
T ss_pred hhcccceeEEecCCccc-ccCccccccchhhcccccccccch--------hhhhhhhhccccccccccCCchhhh-hhhh
Confidence 33445555555555555 33444444442 555555555543 2222344555555555555555544 2333
Q ss_pred ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (922)
.+..+.|+.|++++|++. .+|..+.....|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++..+..+++++
T Consensus 182 ~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~ 258 (394)
T COG4886 182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence 335556666666666665 44444444455666666666432 23345556666666666666654 2245556666666
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccc
Q 002435 291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPA 329 (922)
Q Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 329 (922)
+|++++|.++.... ++.+.+++.|++++|.+....|.
T Consensus 259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 259 TLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 66666666664333 56666666666666666544443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=1.3e-11 Score=132.70 Aligned_cols=172 Identities=29% Similarity=0.370 Sum_probs=138.2
Q ss_pred ceEeccCccccCCCCCC--CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCC
Q 002435 487 FTLDLSYNYLQGPLPVP--PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH 564 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~--~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~ 564 (922)
...|++.|++...+... +..++.+.+..|.+. .||..++. +..|+++||+.|+++ ..|..++.++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSN 152 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc--ceeEEEec
Confidence 44566666665443322 456777788888887 78888888 889999999999998 7788888887 99999999
Q ss_pred CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCC
Q 002435 565 NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIR 644 (922)
Q Consensus 565 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 644 (922)
|+++ .+|..++.+..|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+..| .|..||++.|++..+ |
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~i-P 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYL-P 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeec-c
Confidence 9997 77888888899999999999998 67888999999999999999998 456666644 588999999999865 3
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCCh
Q 002435 645 EPNTGCGFPELRIIDLSNNRFTGKLPS 671 (922)
Q Consensus 645 ~~~~~~~l~~L~~LdLs~N~l~g~ip~ 671 (922)
.. ++.+..|++|-|.+|++. +-|.
T Consensus 228 v~--fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 228 VD--FRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred hh--hhhhhhheeeeeccCCCC-CChH
Confidence 33 478899999999999997 4443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.1e-11 Score=133.16 Aligned_cols=175 Identities=34% Similarity=0.456 Sum_probs=101.1
Q ss_pred cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHh
Q 002435 109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVK 188 (922)
Q Consensus 109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~ 188 (922)
.+.--...||+.|++. .+|...+.+..|+.+.|..|.+ -.+|..++++..|.+|||+.|++. .+|..+.
T Consensus 73 ~ltdt~~aDlsrNR~~--elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS--------~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS--ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS--------HLPDGLC 141 (722)
T ss_pred cccchhhhhccccccc--cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh--------cCChhhh
Confidence 4555566778888774 4777777777788888887777 667777888888888888887742 2333333
Q ss_pred cCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435 189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268 (922)
Q Consensus 189 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 268 (922)
.|+ |+.|-+++|+++. +|+.++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..|
T Consensus 142 ~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRL 216 (722)
T ss_pred cCc-ceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeee
Confidence 332 5555555555443 3444554555555555555554 34444555555555555555554 233334422 25555
Q ss_pred EcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435 269 DISWNELSGELPASIGNLASLEQLELSLNRFR 300 (922)
Q Consensus 269 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 300 (922)
|++.|+++ .+|..|.+|..|++|.|.+|.+.
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 55555554 44555555555555555555554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.9e-11 Score=123.14 Aligned_cols=184 Identities=23% Similarity=0.259 Sum_probs=82.5
Q ss_pred CCCCCcEEEcccCCCCCC--chhhhhCCCCCCEEEccCCCCCCCCccc-ccCCCCCcEEEeeccCCCC-cccccccCCCC
Q 002435 261 NLDCLKRLDISWNELSGE--LPASIGNLASLEQLELSLNRFRGKTPHS-MGNFTRLYWLSLASNDFSG-ELPASFGNLRS 336 (922)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~ 336 (922)
.|++++.|||++|-+..- +......+++|+.|+|+.|++....... -..+++|+.|.++.|.++- .+-..+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 344444444444444321 1122344555555555555544222111 1234555666666665542 11122334566
Q ss_pred CceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccc------cCCCC
Q 002435 337 LEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF------NTSQK 410 (922)
Q Consensus 337 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~ 410 (922)
|+.|++..|.....-......+..|++|+|++|++.. .+.......++.|+.|+++.+.+..+..... ..+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 6666666664222222223344556666666666542 2211222455666666666665554432221 23445
Q ss_pred ccEEEecCCCCCCCcc--cccCCCCccEEECcCCCCC
Q 002435 411 FNFVGLRSCNLNEFPN--FLKNQHYLEVLDLSCNKIH 445 (922)
Q Consensus 411 L~~L~L~~~~l~~lp~--~l~~~~~L~~L~Ls~n~l~ 445 (922)
|++|++..|++..++. .+..+++|+.|.+..|.+.
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555555555543332 2333444444444444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.9e-11 Score=123.58 Aligned_cols=215 Identities=28% Similarity=0.302 Sum_probs=108.4
Q ss_pred cCCCCCCEEECCCCCCCCcCc--hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435 133 INLSRLSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210 (922)
Q Consensus 133 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~ 210 (922)
.++++|+...|.++.. +..+ .....|++++.||||.|-+++. ..+-.....+++|+.|+++.|.+.......
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw-----~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNW-----FPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhH-----HHHHHHHHhcccchhcccccccccCCcccc
Confidence 4567777777777665 2222 2455577777777777755433 223455566677777777776654432221
Q ss_pred c-cCCCCCCEEeccCccCCcc-CccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCch--hhhhCC
Q 002435 211 L-ANLSSLTLLSLSGCELRGR-IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELP--ASIGNL 286 (922)
Q Consensus 211 l-~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l 286 (922)
. ..+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+..|++|+|++|++.. .+ ...+.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence 1 2346666666666666522 11223455666666666664222222233344556666666665542 12 224455
Q ss_pred CCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEE
Q 002435 287 ASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLE 365 (922)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ 365 (922)
+.|+.|+++.+.+....-... ..-+-...+++|++|++..|++... .-..+..+++|+.|.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cchhhhhccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 555555555555443211110 0000023345666666666665321 112334455566666
Q ss_pred ccCCCCc
Q 002435 366 FSHNNFS 372 (922)
Q Consensus 366 L~~n~l~ 372 (922)
+..|.+.
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 6666554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.7e-10 Score=114.43 Aligned_cols=131 Identities=26% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318 (922)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (922)
+.|+++|||+|.|+ .+.++..-.++++.|++++|.+.. + +.+..+++|+.|||++|.++. ...+-..+-+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 34444444444443 222333334444444444444431 1 124444444444444444432 1122223344444555
Q ss_pred eccCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEEccCCCCcCcc
Q 002435 319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNFSGPI 375 (922)
Q Consensus 319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~ 375 (922)
++|.+.. -..++.+-+|..||+++|+|... .-..++++|.|+.+.+.+|.+.+..
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 5544421 12244445555556665555421 1124556666666666666665433
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=3e-10 Score=112.75 Aligned_cols=133 Identities=21% Similarity=0.202 Sum_probs=78.7
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEE
Q 002435 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365 (922)
Q Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 365 (922)
...|+++||++|.++ .+..+..-.|.++.|++++|.+... ..+..+++|+.|||++|.++. +..+-..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 344666666666665 3334455556666666666666522 225566666777777666652 233444556666777
Q ss_pred ccCCCCcCccchhhhhhccCCcceEeCcCccccccccc-cccCCCCccEEEecCCCCCCCcc
Q 002435 366 FSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKA-IFNTSQKFNFVGLRSCNLNEFPN 426 (922)
Q Consensus 366 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~L~~~~l~~lp~ 426 (922)
+++|.+..- + -+..+-+|..||+++|+|...... .++.+|.|+.+.+.+|.+..+++
T Consensus 359 La~N~iE~L---S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETL---S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhh---h-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 777665421 1 124566677777777776665432 35667777777777777766654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.4e-09 Score=104.63 Aligned_cols=106 Identities=33% Similarity=0.412 Sum_probs=28.8
Q ss_pred CCCCCCEEeccCccCCccCccccC-CCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhh-hCCCCCC
Q 002435 213 NLSSLTLLSLSGCELRGRIPSLLG-NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI-GNLASLE 290 (922)
Q Consensus 213 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~ 290 (922)
+..++++|+|++|+|+.. +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 444566677777666632 3344 466777777777777643 346666777777777777763 33333 3567777
Q ss_pred EEEccCCCCCCCCc-ccccCCCCCcEEEeeccCC
Q 002435 291 QLELSLNRFRGKTP-HSMGNFTRLYWLSLASNDF 323 (922)
Q Consensus 291 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 323 (922)
+|++++|++..... ..+..+++|+.|++.+|.+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 77777777654221 2333444444444444444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.7e-09 Score=85.38 Aligned_cols=60 Identities=40% Similarity=0.594 Sum_probs=38.2
Q ss_pred CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435 754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813 (922)
Q Consensus 754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l 813 (922)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666655556666666666666666666666666666666666666666654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=2.7e-09 Score=128.18 Aligned_cols=85 Identities=33% Similarity=0.355 Sum_probs=41.6
Q ss_pred ccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc
Q 002435 132 IINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211 (922)
Q Consensus 132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l 211 (922)
|..++.|++|||++|.=.+.+|..|++|-+||+|+++++.+ ..+|..+.+++.|.+|++..+.....+|..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------SHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------cccchHHHHHHhhheeccccccccccccchh
Confidence 44455555555555444445555555555555555555543 2344455555555555555444333333334
Q ss_pred cCCCCCCEEeccC
Q 002435 212 ANLSSLTLLSLSG 224 (922)
Q Consensus 212 ~~l~~L~~L~Ls~ 224 (922)
..+++|++|.+..
T Consensus 639 ~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 639 LELQSLRVLRLPR 651 (889)
T ss_pred hhcccccEEEeec
Confidence 4455555555543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.6e-09 Score=102.80 Aligned_cols=84 Identities=33% Similarity=0.379 Sum_probs=16.9
Q ss_pred CCCCCCEEeCcCCCCCCCcccccC-CCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcE
Q 002435 237 NLTKLMYLDLSFNNLLGELPTSIG-NLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYW 315 (922)
Q Consensus 237 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (922)
+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|.++...+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 334556666666666532 2343 35556666666666552 2 23445555555555555555332211123455555
Q ss_pred EEeeccCCC
Q 002435 316 LSLASNDFS 324 (922)
Q Consensus 316 L~L~~n~l~ 324 (922)
|++++|++.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 555555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=5.3e-09 Score=82.57 Aligned_cols=61 Identities=38% Similarity=0.480 Sum_probs=57.2
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 789 (922)
+.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3588999999999977778999999999999999999999999999999999999999986
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=4.8e-09 Score=126.10 Aligned_cols=178 Identities=26% Similarity=0.291 Sum_probs=115.4
Q ss_pred cEEEEECCCCCC-CCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCE
Q 002435 86 HVIKLDLSNSCL-QGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVS 164 (922)
Q Consensus 86 ~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 164 (922)
.+++|-+.++.. -..++. ..|..++.|++|||++|.-. ..+|..|+.+-+||||+|+++.+ ..+|..+++|..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhhe
Confidence 467777777652 111111 24777999999999997644 45999999999999999999998 589999999999999
Q ss_pred EEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcC--CCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCC
Q 002435 165 LDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI--SSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLM 242 (922)
Q Consensus 165 L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 242 (922)
|++..+... ..+|.....+++||+|.+..... +...-..+.++.+|+.+....... .+-..+..+++|.
T Consensus 623 Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 623 LNLEVTGRL-------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLR 693 (889)
T ss_pred ecccccccc-------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence 999987521 23356677799999999987652 222334455556666665543332 1112223333333
Q ss_pred ----EEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC
Q 002435 243 ----YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS 276 (922)
Q Consensus 243 ----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 276 (922)
.+.+..+... ..+..+..+.+|+.|.+.++.+.
T Consensus 694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 2222222221 23345566667777777666654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.7e-09 Score=119.30 Aligned_cols=199 Identities=27% Similarity=0.271 Sum_probs=95.4
Q ss_pred cCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc
Q 002435 259 IGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338 (922)
Q Consensus 259 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 338 (922)
+..+++|+.|++.+|++.. +...+..+++|++|++++|.|+...+ +..++.|+.|++.+|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence 3344444444444444442 11113444555555555555543322 33344455555555555421 2233355566
Q ss_pred eEecCCCccCccCc-hhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEec
Q 002435 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLR 417 (922)
Q Consensus 339 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 417 (922)
.+++++|++....+ . ...+.+++.+++.+|.+...... ..+..+..+++..|.++.+..........|+.++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence 66666666554322 1 35555666666666655422211 223333344555565554432211111126666666
Q ss_pred CCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435 418 SCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471 (922)
Q Consensus 418 ~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~ 471 (922)
++.+..++..+..+..+..|++.+|++...-... ....+..+....|.+.
T Consensus 241 ~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~----~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 241 GNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE----RLPKLSELWLNDNKLA 290 (414)
T ss_pred cCccccccccccccccccccchhhcccccccccc----ccchHHHhccCcchhc
Confidence 6666666555666677777777777765332211 2334444444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.3e-09 Score=119.73 Aligned_cols=62 Identities=29% Similarity=0.251 Sum_probs=31.6
Q ss_pred cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCC
Q 002435 109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYY 173 (922)
Q Consensus 109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~ 173 (922)
.+..++.+++..|.+.. +-..++.+++|++|++.+|.+... ...+..+++|++|++++|.|.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc
Confidence 44555555566555532 223355556666666666655322 222444555666666665543
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.58 E-value=6.7e-08 Score=69.57 Aligned_cols=42 Identities=40% Similarity=0.786 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEec
Q 002435 28 SYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECN 81 (922)
Q Consensus 28 ~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~ 81 (922)
++|++||++||+++..++. ..+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~-----------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS-----------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC------------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC-----------cccccCCCcC-CCCCeeeccEEeC
Confidence 6899999999999986443 2789999731 2799999999995
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.4e-09 Score=106.53 Aligned_cols=177 Identities=23% Similarity=0.167 Sum_probs=90.7
Q ss_pred CCEEECCCCCCCCc-CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCC-CchhccCC
Q 002435 138 LSYLNLSSAGFFGQ-IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSP-IPHSLANL 214 (922)
Q Consensus 138 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~-~~~~l~~l 214 (922)
|++||||...++.. +-.-+..|.+|+.|.+.++++. ..+...+.+-.+|+.|+++.+. ++.. ..--+.+|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-------cHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 55555555544321 1122344555555555555421 2333445555555555555543 2221 11224556
Q ss_pred CCCCEEeccCccCCccCccc-cC-CCCCCCEEeCcCCCC--C-CCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCC
Q 002435 215 SSLTLLSLSGCELRGRIPSL-LG-NLTKLMYLDLSFNNL--L-GELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLAS 288 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~-l~-~l~~L~~L~Ls~n~l--~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 288 (922)
+.|+.|++++|.+....... +. --++|+.|+|+++.- . ..+..-...+++|..|||++|. ++...-..|.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 66666666666654322111 11 124566666666521 1 1122223456777777777663 44344455667777
Q ss_pred CCEEEccCCCCCCCCcc---cccCCCCCcEEEeeccCC
Q 002435 289 LEQLELSLNRFRGKTPH---SMGNFTRLYWLSLASNDF 323 (922)
Q Consensus 289 L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l 323 (922)
|++|.++.|.. .+|. .+...+.|.+|+..++--
T Consensus 340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred heeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 88877777753 3443 346667788888776643
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.1e-07 Score=94.79 Aligned_cols=204 Identities=17% Similarity=0.159 Sum_probs=123.1
Q ss_pred CCCCcEEEcccCCCCC--CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCc
Q 002435 262 LDCLKRLDISWNELSG--ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLE 338 (922)
Q Consensus 262 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 338 (922)
++.++.+||.+|.++. .+...+.++|.|+.|+|+.|++...+...-....+|+.|-|.+..+.= .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566667777776653 344445667777777777777665443222345667777776665531 2223455667777
Q ss_pred eEecCCCccCccC--chhhc-CCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc-cccccCCCCccEE
Q 002435 339 GLDISECKFSSQI--PSSLR-NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT-KAIFNTSQKFNFV 414 (922)
Q Consensus 339 ~L~Ls~n~l~~~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L 414 (922)
+|.++.|.+.... ..... .-+.+++|.+-.|...-..........+|++..+.+..|.+.... ...+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 7777777432110 01111 112445555555543322222223356788999999999887654 3456778888899
Q ss_pred EecCCCCCCCc--ccccCCCCccEEECcCCCCCCCC----CccccccCCCCccEEEc
Q 002435 415 GLRSCNLNEFP--NFLKNQHYLEVLDLSCNKIHGKV----PKWLIEPSMQNFSYLNL 465 (922)
Q Consensus 415 ~L~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~~~l~~L~~L~L 465 (922)
+|+.+++.++. +.+..++.|..|.++++.+...+ +..+.-..+++++.|+=
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 99999998665 46788999999999999876443 33222235566666653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-08 Score=101.69 Aligned_cols=156 Identities=27% Similarity=0.365 Sum_probs=78.4
Q ss_pred CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCcc-CCcc-CccccCCC
Q 002435 161 NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE-LRGR-IPSLLGNL 238 (922)
Q Consensus 161 ~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l 238 (922)
.||+||||...+ +...+...+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.++
T Consensus 186 Rlq~lDLS~s~i------t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVI------TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhhe------eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 467777776542 223444556667777777777777777666666666777777776653 2211 11123566
Q ss_pred CCCCEEeCcCCCCCCCcccc-cCC-CCCCcEEEcccCCCC---CCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCC
Q 002435 239 TKLMYLDLSFNNLLGELPTS-IGN-LDCLKRLDISWNELS---GELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTR 312 (922)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~-l~~-l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 312 (922)
+.|..|+|++|.++...... +.+ -++|+.|+++++.-. ..+..-...+++|.+|||++|. ++......|.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 66666666666554332111 111 145556666554211 1122222345555555555543 22222223334444
Q ss_pred CcEEEeeccC
Q 002435 313 LYWLSLASND 322 (922)
Q Consensus 313 L~~L~L~~n~ 322 (922)
|++|.++.|.
T Consensus 340 L~~lSlsRCY 349 (419)
T KOG2120|consen 340 LQHLSLSRCY 349 (419)
T ss_pred heeeehhhhc
Confidence 4444444443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=1e-08 Score=107.11 Aligned_cols=298 Identities=19% Similarity=0.128 Sum_probs=143.0
Q ss_pred CcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccc-cCCCCCCEEECCCCC-CCCcCchhh-cCCCC
Q 002435 85 GHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEI-INLSRLSYLNLSSAG-FFGQIPSEI-LELSN 161 (922)
Q Consensus 85 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~ 161 (922)
+++++|.++|.+-.+.-+.-.....++++++|++.++...++..-..+ ..+++|++|+|..|. ++...-..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 567777777765444322211334677777777777754322222222 357777888777743 332222222 24777
Q ss_pred CCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc----cCCCCCCEEeccCcc-CCccCcc-cc
Q 002435 162 LVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL----ANLSSLTLLSLSGCE-LRGRIPS-LL 235 (922)
Q Consensus 162 L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~~~-~l 235 (922)
|++|+++.+. ++....+.....++..++.+.+.+|.-.+ .+.+ +.+..+.++++..|. +++..-. .-
T Consensus 218 L~~lNlSwc~-----qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 218 LKYLNLSWCP-----QISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhccCc-----hhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 7888877773 44445555666666666666666543211 1111 233445555555543 2221111 11
Q ss_pred CCCCCCCEEeCcCCCCCCC-cccc-cCCCCCCcEEEcccCCC-CCCchhhh-hCCCCCCEEEccCCCCCCC--CcccccC
Q 002435 236 GNLTKLMYLDLSFNNLLGE-LPTS-IGNLDCLKRLDISWNEL-SGELPASI-GNLASLEQLELSLNRFRGK--TPHSMGN 309 (922)
Q Consensus 236 ~~l~~L~~L~Ls~n~l~~~-~~~~-l~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~ 309 (922)
..+..|+.|+.+++.-.+. .-.+ -.+..+|+.|.++.++- +..--..+ .+++.|+.+++..+..... +...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 2456666776666533211 1111 23456677777666652 21111112 2455666666665543211 1122234
Q ss_pred CCCCcEEEeeccCCCCcc-----cccccCCCCCceEecCCCccC-ccCchhhcCCCCccEEEccCCCCcCccchhhhhhc
Q 002435 310 FTRLYWLSLASNDFSGEL-----PASFGNLRSLEGLDISECKFS-SQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVN 383 (922)
Q Consensus 310 l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 383 (922)
++.|+.+.++.+...... ...-..+..|+.+.++++... ...-+.+..+++|+.+++.+++-....+...|..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 556666666655432111 111123345555555555433 22223344555555555555544333333334344
Q ss_pred cCCcce
Q 002435 384 FKHLEH 389 (922)
Q Consensus 384 l~~L~~ 389 (922)
+|+++.
T Consensus 451 lp~i~v 456 (483)
T KOG4341|consen 451 LPNIKV 456 (483)
T ss_pred Ccccee
Confidence 444443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=3.2e-07 Score=90.51 Aligned_cols=247 Identities=20% Similarity=0.177 Sum_probs=121.0
Q ss_pred ccCCCCCCEEECCCCCCCCcCc----hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCC
Q 002435 132 IINLSRLSYLNLSSAGFFGQIP----SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI 207 (922)
Q Consensus 132 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~ 207 (922)
+..+..++.+|||+|.|...-. ..|.+-.+|+..+++.-.. ......++..+. .+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft----gr~kde~~~~L~-----------------~L 84 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT----GRDKDELYSNLV-----------------ML 84 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh----cccHHHHHHHHH-----------------HH
Confidence 4456778888888887754433 3344456677666665321 000011111100 01
Q ss_pred chhccCCCCCCEEeccCccCCccCccc----cCCCCCCCEEeCcCCCCCCC----ccc---------ccCCCCCCcEEEc
Q 002435 208 PHSLANLSSLTLLSLSGCELRGRIPSL----LGNLTKLMYLDLSFNNLLGE----LPT---------SIGNLDCLKRLDI 270 (922)
Q Consensus 208 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~----~~~---------~l~~l~~L~~L~L 270 (922)
..++.+||+|+..+||.|.+....|+. +++-+.|++|.+++|.+.-. +.. -...-+.|++...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 123444555555555555554433332 34455566666666654311 111 1223466777777
Q ss_pred ccCCCCCCc----hhhhhCCCCCCEEEccCCCCCCCCc-----ccccCCCCCcEEEeeccCCCCc----ccccccCCCCC
Q 002435 271 SWNELSGEL----PASIGNLASLEQLELSLNRFRGKTP-----HSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSL 337 (922)
Q Consensus 271 ~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L 337 (922)
..|++.... ...+..-.+|+++.+..|.|..... ..+..+.+|+.|++.+|.++.. +...+...+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 777765221 1123333567777777776653211 1234556677777777766532 22333445566
Q ss_pred ceEecCCCccCccCchhh------cCCCCccEEEccCCCCcCccchhhh-----hhccCCcceEeCcCccccc
Q 002435 338 EGLDISECKFSSQIPSSL------RNLAQLKFLEFSHNNFSGPIDLDMF-----LVNFKHLEHLSLSSNRLSL 399 (922)
Q Consensus 338 ~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~ 399 (922)
++|.+.+|-++..-..++ ...++|+.|...+|...+.+-...+ ...+|-|..|.+.+|++..
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 777777776653322211 1245666666666655543322211 1234455555555555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.7e-08 Score=111.93 Aligned_cols=125 Identities=30% Similarity=0.364 Sum_probs=52.6
Q ss_pred CCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeec
Q 002435 241 LMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLAS 320 (922)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (922)
|...+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+....--....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 444444444443 2233444445555555555555422 2444555555555555554422211122222 45555555
Q ss_pred cCCCCcccccccCCCCCceEecCCCccCcc-CchhhcCCCCccEEEccCCCC
Q 002435 321 NDFSGELPASFGNLRSLEGLDISECKFSSQ-IPSSLRNLAQLKFLEFSHNNF 371 (922)
Q Consensus 321 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l 371 (922)
|.++.. ..+.++.+|+.||+++|-+.+. .-.-+..+..|+.|+|.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 544321 1234444445555555444321 011123334444444444443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=2.3e-07 Score=91.42 Aligned_cols=189 Identities=22% Similarity=0.199 Sum_probs=89.6
Q ss_pred CCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEECCCCCC---CCcCc-------hhhcCCCCCCEEEcCCCCCCCcc
Q 002435 110 LVHLEWLDLAFNYFICS---EIPPEIINLSRLSYLNLSSAGF---FGQIP-------SEILELSNLVSLDLSHNSYYNLI 176 (922)
Q Consensus 110 l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~ 176 (922)
+..+..+|||+|.|... .+...|.+-.+|++.+++.-.. ...++ +.+.+|++|+..+||.|.+..-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 44445555555544322 1223344455566665554311 11122 23456667777777766543221
Q ss_pred cccCCChhHHHhcCCCCCEEEcCCCcCCCCCch-------------hccCCCCCCEEeccCccCCccCc----cccCCCC
Q 002435 177 ELKEPNLGNLVKKLTNLKELALGGVTISSPIPH-------------SLANLSSLTLLSLSGCELRGRIP----SLLGNLT 239 (922)
Q Consensus 177 ~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~ 239 (922)
. ..+...+++-+.|.+|.+++|.+.-..-. -.++-|.|++.....|++..... ..+..-.
T Consensus 109 ~---e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 109 P---EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred c---hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 1 33445666667777777776665321111 12334666666666666542211 1122224
Q ss_pred CCCEEeCcCCCCCCCc-----ccccCCCCCCcEEEcccCCCCCC----chhhhhCCCCCCEEEccCCCCCC
Q 002435 240 KLMYLDLSFNNLLGEL-----PTSIGNLDCLKRLDISWNELSGE----LPASIGNLASLEQLELSLNRFRG 301 (922)
Q Consensus 240 ~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 301 (922)
.|+.+.+..|.|.-.- -..+..+.+|+.||+..|.++-. +..++...+.|++|.+..|-++.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 5666666666553210 01123345566666666655421 12233344445555555555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.1e-07 Score=90.91 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCcccccCCCCc
Q 002435 357 NLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFPNFLKNQHYL 434 (922)
Q Consensus 357 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp~~l~~~~~L 434 (922)
.++.++++|+.+|.++..-.....+.++|.|+.|++++|.+.......-.+..+|+.+-|.+..+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 455677777777777766555555667777777777777776555443345677888888777665 555666777777
Q ss_pred cEEECcCCCC
Q 002435 435 EVLDLSCNKI 444 (922)
Q Consensus 435 ~~L~Ls~n~l 444 (922)
++|.+|.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777777744
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=7.9e-08 Score=84.97 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=26.4
Q ss_pred CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435 754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813 (922)
Q Consensus 754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l 813 (922)
.++.|||++|.|+. +|..+..++.|+.|+++.|.+.- .|+-+..|.+|.+||...|.+
T Consensus 78 t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 78 TATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence 44444444444442 33334444444455555544442 233333344444444444444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=1.7e-07 Score=104.24 Aligned_cols=128 Identities=29% Similarity=0.327 Sum_probs=65.7
Q ss_pred cceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611 (922)
Q Consensus 532 L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 611 (922)
|...+.++|.+. .+..++.-++ .|+.|+|++|+++... .+..++.|+.|||++|.+....--.-.+|. |+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHH-HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 444455555554 3333444444 4666666666665332 455566666666666666533222333343 6666666
Q ss_pred CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 667 (922)
+|.++.. ..+.++.+|+-||+++|-+.+.-.-. ..+.+..|+.|+|.+|++-|
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcccc
Confidence 6665532 33455666666666666555431111 11234556666666666543
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=3.2e-07 Score=96.13 Aligned_cols=298 Identities=18% Similarity=0.133 Sum_probs=145.9
Q ss_pred CCCEEECCCCCCCCcCc--hhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCCCchhc-c
Q 002435 137 RLSYLNLSSAGFFGQIP--SEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSPIPHSL-A 212 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~~~~~l-~ 212 (922)
.|+.|.++++.-.+.-+ ..-.+++++++|++.++. .+++..+-..-..+++|++|++..|. ++...-..+ .
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce-----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 46667777665433222 223346666666666663 23334444445556666666665532 332222211 2
Q ss_pred CCCCCCEEeccCcc-CCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhh----hCCC
Q 002435 213 NLSSLTLLSLSGCE-LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASI----GNLA 287 (922)
Q Consensus 213 ~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~ 287 (922)
.+++|++|++++|. +++. .+...+.+++.++.+.+.+|.=.+ ...+ ..+.
T Consensus 214 gC~kL~~lNlSwc~qi~~~-----------------------gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~ 268 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGN-----------------------GVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCL 268 (483)
T ss_pred hhhhHHHhhhccCchhhcC-----------------------cchHHhccchhhhhhhhccccccc--HHHHHHHhccCh
Confidence 34455555555443 2210 011122334444444444432110 0111 1223
Q ss_pred CCCEEEccCCC-CCCCCc-ccccCCCCCcEEEeeccCCCCcc-c-ccccCCCCCceEecCCCcc-CccCchhh-cCCCCc
Q 002435 288 SLEQLELSLNR-FRGKTP-HSMGNFTRLYWLSLASNDFSGEL-P-ASFGNLRSLEGLDISECKF-SSQIPSSL-RNLAQL 361 (922)
Q Consensus 288 ~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~Ls~n~l-~~~~~~~l-~~l~~L 361 (922)
.+..+++.++. ++...- ..-..+.+|+.++.+++...+.. - .--.+..+|+.|.++.|+- +..--..+ .+++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 34444443432 222111 11234556677776665532211 1 1123467777777777753 21111112 456778
Q ss_pred cEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccc-----cccccCCCCccEEEecCCCCC--CCcccccCCCCc
Q 002435 362 KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFT-----KAIFNTSQKFNFVGLRSCNLN--EFPNFLKNQHYL 434 (922)
Q Consensus 362 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~~~~L~~L~L~~~~l~--~lp~~l~~~~~L 434 (922)
+.+++..+.....-.......+++.|+.+.++++...... ...-.....++.+.+++|..+ ..-+.+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 8888877765433333334467888888888888644332 111234567788888888766 344567778888
Q ss_pred cEEECcCCCCCCCCCccccccCCCCccEEE
Q 002435 435 EVLDLSCNKIHGKVPKWLIEPSMQNFSYLN 464 (922)
Q Consensus 435 ~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~ 464 (922)
+.+++.+++-...-+..-...+++++++..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 888888876433322221112556555443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.5e-05 Score=57.50 Aligned_cols=36 Identities=44% Similarity=0.616 Sum_probs=15.7
Q ss_pred CCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc
Q 002435 754 GLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790 (922)
Q Consensus 754 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 790 (922)
+|++|+|++|+|+. +|..+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444444444444444444
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=2.1e-06 Score=76.18 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC
Q 002435 239 TKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR 300 (922)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 300 (922)
+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444444444444 33444555555555555555544 33444444555555555554443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00012 Score=79.56 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=15.5
Q ss_pred CCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435 579 RSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613 (922)
Q Consensus 579 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 613 (922)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 34555555555543 2233332 35666666554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=5.5e-05 Score=72.15 Aligned_cols=126 Identities=22% Similarity=0.178 Sum_probs=84.2
Q ss_pred ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612 (922)
Q Consensus 533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 612 (922)
+.++|.+.++... ..++.+..+...+||++|.+.. -..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+
T Consensus 22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccch--hhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4455555555422 1133333467778888888853 24567788888888888888887777666778888889988
Q ss_pred CcCccCcc-hhhcCCCCCCEEEcCCCcccccCC-CCCCCCCCCCccEEEccC
Q 002435 613 NQISGTFP-SWLGTLRELNVLILKSNKLHGMIR-EPNTGCGFPELRIIDLSN 662 (922)
Q Consensus 613 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~LdLs~ 662 (922)
|+|..... .-+..||.|+.|.+-+|+....-- .....+.+|+|+.||...
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88764321 336678888888888888764311 112235678888888765
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=3.1e-05 Score=55.78 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=32.8
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 768 (922)
.|+.|++++|+|+ .+|..+++|++|+.|++++|+++..
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 5889999999999 6787899999999999999999853
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00024 Score=77.18 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=49.8
Q ss_pred ccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC-cccccCCCCCCCCCCC
Q 002435 575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN-KLHGMIREPNTGCGFP 653 (922)
Q Consensus 575 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~ 653 (922)
+..+..++.|++++|.++. +| .+ -++|+.|+++++.--..+|..+ .++|+.|++++| .+.. +| +
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP--------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP--------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc--------c
Confidence 4456889999999998874 45 22 2469999998854334566544 257888888888 4432 22 3
Q ss_pred CccEEEccCCcC
Q 002435 654 ELRIIDLSNNRF 665 (922)
Q Consensus 654 ~L~~LdLs~N~l 665 (922)
+|+.|++++|..
T Consensus 113 sLe~L~L~~n~~ 124 (426)
T PRK15386 113 SVRSLEIKGSAT 124 (426)
T ss_pred ccceEEeCCCCC
Confidence 477777776553
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=5.6e-05 Score=89.22 Aligned_cols=152 Identities=26% Similarity=0.326 Sum_probs=104.7
Q ss_pred CCCCCEEECCCCCCCC-cCchhhcC-CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc
Q 002435 135 LSRLSYLNLSSAGFFG-QIPSEILE-LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA 212 (922)
Q Consensus 135 l~~L~~L~Ls~n~l~~-~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 212 (922)
-.+|++||+++..... .-|..++. ||.|++|.+++-.+ ....+.....++++|+.||+++++++.. ..++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 4678888888865432 23344554 88899998887552 1233566778889999999999888764 6788
Q ss_pred CCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCcCCCCCCCc--c----cccCCCCCCcEEEcccCCCCCCchhhh-h
Q 002435 213 NLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLSFNNLLGEL--P----TSIGNLDCLKRLDISWNELSGELPASI-G 284 (922)
Q Consensus 213 ~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~ 284 (922)
++++|++|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+...+-+.+ .
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 88999999888766552 22345678999999999987654321 1 223458999999999998876554443 3
Q ss_pred CCCCCCEEEc
Q 002435 285 NLASLEQLEL 294 (922)
Q Consensus 285 ~l~~L~~L~L 294 (922)
..++|+.+.+
T Consensus 273 sH~~L~~i~~ 282 (699)
T KOG3665|consen 273 SHPNLQQIAA 282 (699)
T ss_pred hCccHhhhhh
Confidence 4556665543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=7.4e-05 Score=88.21 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=107.8
Q ss_pred CCCCCEEEcCCCCCCCcccccCCChhHHH-hcCCCCCEEEcCCCcCCCC-CchhccCCCCCCEEeccCccCCccCccccC
Q 002435 159 LSNLVSLDLSHNSYYNLIELKEPNLGNLV-KKLTNLKELALGGVTISSP-IPHSLANLSSLTLLSLSGCELRGRIPSLLG 236 (922)
Q Consensus 159 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~-~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 236 (922)
-.+|++||+++... + . ...|..+ .-+|+|+.|.+.+-.+... .-....++|+|..||+|+++++.. ..++
T Consensus 121 r~nL~~LdI~G~~~---~--s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL---F--S-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HHhhhhcCccccch---h--h-ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 36899999999753 1 1 3333333 4579999999999776543 344556889999999999999854 7789
Q ss_pred CCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCc--h----hhhhCCCCCCEEEccCCCCCCCCcccc-c
Q 002435 237 NLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGEL--P----ASIGNLASLEQLELSLNRFRGKTPHSM-G 308 (922)
Q Consensus 237 ~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~ 308 (922)
++++|+.|.+.+-.+.. ..-..+.+|++|+.||+|........ . +.-..+|+|+.||.+++.+....-+.+ .
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 99999999998877763 23346778999999999987655321 1 112358999999999988776544332 3
Q ss_pred CCCCCcEEEe
Q 002435 309 NFTRLYWLSL 318 (922)
Q Consensus 309 ~l~~L~~L~L 318 (922)
..++|+.+..
T Consensus 273 sH~~L~~i~~ 282 (699)
T KOG3665|consen 273 SHPNLQQIAA 282 (699)
T ss_pred hCccHhhhhh
Confidence 3445554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00063 Score=65.09 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=27.0
Q ss_pred cCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccc
Q 002435 332 GNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLS 398 (922)
Q Consensus 332 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 398 (922)
..++.|.+|.+.+|+|+...|.--..+++|+.|.+.+|++....+.... ..+|+|++|.+-+|.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchh
Confidence 3344444444444444433333333334444444444444322222211 33444444444444433
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.68 E-value=0.0031 Score=58.32 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=12.0
Q ss_pred ccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEc
Q 002435 234 LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI 270 (922)
Q Consensus 234 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 270 (922)
.|.++++|+.+.+..+ +.......|.++++|+.+.+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred hccccccccccccccc-ccccceeeeecccccccccc
Confidence 3444444444444332 32222233444434444444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.68 E-value=0.0037 Score=57.80 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=31.7
Q ss_pred ccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCC
Q 002435 234 LLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL 313 (922)
Q Consensus 234 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (922)
.|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +...-..+|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 333333344555555665555543 3322233444554555555543 2222223344444455
Q ss_pred cEEEee
Q 002435 314 YWLSLA 319 (922)
Q Consensus 314 ~~L~L~ 319 (922)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00097 Score=66.75 Aligned_cols=61 Identities=31% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCC--CCCCCcccccCCCCCCcEEEcccCCCC
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN--NLLGELPTSIGNLDCLKRLDISWNELS 276 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~ 276 (922)
+..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++-....+++|++|++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444555554444321 23344555555555555 333333333334455555555555543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.57 E-value=0.00084 Score=78.08 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=9.3
Q ss_pred ccCCCCCceEecCCCc
Q 002435 331 FGNLRSLEGLDISECK 346 (922)
Q Consensus 331 l~~l~~L~~L~Ls~n~ 346 (922)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455666666666655
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.47 E-value=0.00056 Score=79.54 Aligned_cols=110 Identities=29% Similarity=0.267 Sum_probs=49.0
Q ss_pred cCCCCCEEEcCCCcCCCC--CchhccCCCCCCEEeccCc-cCCccCc----cccCCCCCCCEEeCcCCC-CCCCcccccC
Q 002435 189 KLTNLKELALGGVTISSP--IPHSLANLSSLTLLSLSGC-ELRGRIP----SLLGNLTKLMYLDLSFNN-LLGELPTSIG 260 (922)
Q Consensus 189 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~ 260 (922)
.++.|+.|.+.++.-... .-.....++.|+.|+++++ ......+ .....+++|+.|+++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 355666666555532222 2233445566666666552 1111111 122334555566665555 3333222222
Q ss_pred C-CCCCcEEEcccCC-CCCC-chhhhhCCCCCCEEEccCCC
Q 002435 261 N-LDCLKRLDISWNE-LSGE-LPASIGNLASLEQLELSLNR 298 (922)
Q Consensus 261 ~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~ 298 (922)
. +++|++|.+.++. +++. +-.....+++|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 4555555555554 3322 12222345555555555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00022 Score=71.27 Aligned_cols=85 Identities=27% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc-ccccccCCCCCceE
Q 002435 262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE-LPASFGNLRSLEGL 340 (922)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 340 (922)
+.+.+.|+..+|.+++. ....+++.|+.|.|+-|+|+...| +..|++|++|+|..|.|... --..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44566777777777632 335577778888888777775443 55666777777777666531 11234555666666
Q ss_pred ecCCCccCcc
Q 002435 341 DISECKFSSQ 350 (922)
Q Consensus 341 ~Ls~n~l~~~ 350 (922)
.|..|.-.+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 6666554443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0046 Score=62.05 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=31.5
Q ss_pred ccCCCCCcEEECCCC--cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435 599 LVNCSSLKFLDLGNN--QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 599 l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 666 (922)
|..+++|+.|+++.| ++++-.+.....+++|++|++++|+++-+ ...-....+++|..||+.+|.-+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCcc
Confidence 344445555555555 34333333334445555555555555421 01111133556666777666544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00044 Score=69.13 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=54.7
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCc-hhhhhCCCCCCEE
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGEL-PASIGNLASLEQL 292 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 292 (922)
+.+.++|++.+|.+.++ ....+|+.|+.|.||-|+|+.. ..+..|++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556667777776643 2345677777777777777644 34667777777777777776321 1235567777777
Q ss_pred EccCCCCCCCCc
Q 002435 293 ELSLNRFRGKTP 304 (922)
Q Consensus 293 ~L~~n~l~~~~~ 304 (922)
-|..|.-.+..+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 777766555444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0045 Score=37.03 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=5.3
Q ss_pred CCEEeCCCcccc
Q 002435 755 LQVLSLANNSLH 766 (922)
Q Consensus 755 L~~L~Ls~N~l~ 766 (922)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0052 Score=36.75 Aligned_cols=20 Identities=45% Similarity=0.742 Sum_probs=10.3
Q ss_pred CCEEeCCCCcCcccCcccccC
Q 002435 779 LESLDLSNNKFSGQIPQQLVD 799 (922)
Q Consensus 779 L~~L~Ls~N~l~g~ip~~l~~ 799 (922)
|+.||||+|+|+ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 44444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.87 E-value=0.00087 Score=75.86 Aligned_cols=88 Identities=27% Similarity=0.320 Sum_probs=47.5
Q ss_pred CCCCCEEeCcCCCCCCC----cccccCCCCC-CcEEEcccCCCCCC----chhhhhCC-CCCCEEEccCCCCCCCCcc--
Q 002435 238 LTKLMYLDLSFNNLLGE----LPTSIGNLDC-LKRLDISWNELSGE----LPASIGNL-ASLEQLELSLNRFRGKTPH-- 305 (922)
Q Consensus 238 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~~-- 305 (922)
..++++|.+++|.++.. +...+...+. +..|++..|.+.+. ....+..+ ..+++++++.|.++.....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 45566666666655421 1122333344 55566666666532 12233334 4567777777777654433
Q ss_pred --cccCCCCCcEEEeeccCCCC
Q 002435 306 --SMGNFTRLYWLSLASNDFSG 325 (922)
Q Consensus 306 --~l~~l~~L~~L~L~~n~l~~ 325 (922)
.+..++.++.+.+++|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 33455677777777777653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.41 E-value=0.001 Score=75.35 Aligned_cols=136 Identities=26% Similarity=0.385 Sum_probs=65.0
Q ss_pred CCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCC----Cccc----ccCCCCCCcEEEcccCCCCCC----ch
Q 002435 217 LTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLG----ELPT----SIGNLDCLKRLDISWNELSGE----LP 280 (922)
Q Consensus 217 L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~----~l~~l~~L~~L~L~~n~l~~~----~~ 280 (922)
+++|++..|.+++. +.+.+.....++.++++.|.+.. .++. .+....++++|++.+|.++.. +.
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 44444444444322 23334445555555665555421 1111 223355666666666665521 11
Q ss_pred hhhhCCCC-CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC-CCCceEecCCCccCcc----Cchh
Q 002435 281 ASIGNLAS-LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL-RSLEGLDISECKFSSQ----IPSS 354 (922)
Q Consensus 281 ~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~----~~~~ 354 (922)
..+...++ +..|++..|.+.+.... .....+..+ ..+++++++.|.++.. +...
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~--------------------~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVE--------------------KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHH--------------------HHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 22333333 44455555554432111 111222333 4566667777666643 3344
Q ss_pred hcCCCCccEEEccCCCCc
Q 002435 355 LRNLAQLKFLEFSHNNFS 372 (922)
Q Consensus 355 l~~l~~L~~L~L~~n~l~ 372 (922)
+..++.++++.++.|.+.
T Consensus 286 l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HhhhHHHHHhhcccCccc
Confidence 556667777777777665
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.96 E-value=0.32 Score=30.30 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=9.3
Q ss_pred CCCCEEeCCCCcCcccC
Q 002435 777 TGLESLDLSNNKFSGQI 793 (922)
Q Consensus 777 ~~L~~L~Ls~N~l~g~i 793 (922)
++|++|+|++|+|+...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555555555555443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.96 E-value=0.32 Score=30.30 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=9.3
Q ss_pred CCCCEEeCCCCcCcccC
Q 002435 777 TGLESLDLSNNKFSGQI 793 (922)
Q Consensus 777 ~~L~~L~Ls~N~l~g~i 793 (922)
++|++|+|++|+|+...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555555555555443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.58 E-value=0.025 Score=55.54 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=71.4
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV 808 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l 808 (922)
...+.||++.|++. ..-..|.-++.|..||+|.|.+. ..|..++.+..+..+++.+|.++ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34678999999987 34456777889999999999987 67889999999999999999998 46889999999999999
Q ss_pred cCCccc
Q 002435 809 SNNNLT 814 (922)
Q Consensus 809 s~N~ls 814 (922)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999865
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.12 E-value=0.41 Score=29.82 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=16.3
Q ss_pred cCCCCEEeCCCccccccCCcccc
Q 002435 752 LKGLQVLSLANNSLHGHILSCLG 774 (922)
Q Consensus 752 l~~L~~L~Ls~N~l~~~ip~~l~ 774 (922)
|++|+.|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.12 E-value=0.41 Score=29.82 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=16.3
Q ss_pred cCCCCEEeCCCccccccCCcccc
Q 002435 752 LKGLQVLSLANNSLHGHILSCLG 774 (922)
Q Consensus 752 l~~L~~L~Ls~N~l~~~ip~~l~ 774 (922)
|++|+.|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555443
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.68 E-value=0.58 Score=25.87 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=3.0
Q ss_pred cEEEecCCCC
Q 002435 412 NFVGLRSCNL 421 (922)
Q Consensus 412 ~~L~L~~~~l 421 (922)
+.|++++|++
T Consensus 4 ~~L~l~~n~L 13 (17)
T PF13504_consen 4 RTLDLSNNRL 13 (17)
T ss_dssp SEEEETSS--
T ss_pred CEEECCCCCC
Confidence 3333333333
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=0.18 Score=48.83 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc-CCCCCchhccCCC
Q 002435 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT-ISSPIPHSLANLS 215 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~ 215 (922)
.++.+|-+++.+..+--..+.+++.++.|.+.+|.. +++..+...-.-.++|+.|++++|. |+......+..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~-----~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY-----FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc-----hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 356677777666555555666677777777776642 1112221111223444444444443 4443334444444
Q ss_pred CCCEEecc
Q 002435 216 SLTLLSLS 223 (922)
Q Consensus 216 ~L~~L~Ls 223 (922)
+|+.|.+.
T Consensus 177 nLr~L~l~ 184 (221)
T KOG3864|consen 177 NLRRLHLY 184 (221)
T ss_pred hhHHHHhc
Confidence 44444443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=0.25 Score=47.95 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCc
Q 002435 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSN 395 (922)
Q Consensus 336 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n 395 (922)
.++.+|-+++.|..+--+.+..++.++.|.+.+|.--++-.......-.++|+.|++++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 455666666666554445555666666666666554433332222233455566666555
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.09 E-value=0.19 Score=30.64 Aligned_cols=13 Identities=62% Similarity=0.922 Sum_probs=4.4
Q ss_pred CCCEEeCCCCcCc
Q 002435 778 GLESLDLSNNKFS 790 (922)
Q Consensus 778 ~L~~L~Ls~N~l~ 790 (922)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.19 E-value=0.029 Score=55.03 Aligned_cols=88 Identities=25% Similarity=0.222 Sum_probs=54.8
Q ss_pred hccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCC
Q 002435 210 SLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL 289 (922)
Q Consensus 210 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 289 (922)
.+......+.||++.|++. ..-..++.++.|..|+++.|.+. ..|+.++....++.+++..|..+ ..|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455566677777777655 22334555666667777766665 45666666666666666666665 556666666666
Q ss_pred CEEEccCCCCC
Q 002435 290 EQLELSLNRFR 300 (922)
Q Consensus 290 ~~L~L~~n~l~ 300 (922)
+++++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.92 E-value=0.23 Score=30.29 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCCCEEeCCCccccccCC
Q 002435 753 KGLQVLSLANNSLHGHIL 770 (922)
Q Consensus 753 ~~L~~L~Ls~N~l~~~ip 770 (922)
++|++|+|++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456677777777665433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.24 E-value=3.1 Score=25.96 Aligned_cols=15 Identities=67% Similarity=0.853 Sum_probs=9.6
Q ss_pred CCCCCEEeCCCCcCc
Q 002435 776 LTGLESLDLSNNKFS 790 (922)
Q Consensus 776 L~~L~~L~Ls~N~l~ 790 (922)
++.|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 346666777777665
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.21 E-value=32 Score=38.21 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=11.5
Q ss_pred CCCCEEECCCCCCCCcCchhh
Q 002435 136 SRLSYLNLSSAGFFGQIPSEI 156 (922)
Q Consensus 136 ~~L~~L~Ls~n~l~~~~p~~l 156 (922)
+.+++++++.|.+....|..|
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 345666666666555555433
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.90 E-value=7.2 Score=24.79 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=8.6
Q ss_pred CCCCEEeCCCCcCc
Q 002435 777 TGLESLDLSNNKFS 790 (922)
Q Consensus 777 ~~L~~L~Ls~N~l~ 790 (922)
+.|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.88 E-value=23 Score=39.29 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=20.3
Q ss_pred ccEEECcCCCCCCCCCccccc-cCCCCccEEEccCCccccc
Q 002435 434 LEVLDLSCNKIHGKVPKWLIE-PSMQNFSYLNLSHNFLIGF 473 (922)
Q Consensus 434 L~~L~Ls~n~l~~~~p~~~~~-~~l~~L~~L~L~~n~l~~~ 473 (922)
+..+.++.|++....-..... ..-+.++.|++++|.....
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccC
Confidence 555666666654332222211 1335666777777766543
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.54 E-value=19 Score=32.43 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHhh
Q 002435 881 GGLIVGVVLGLNFSIGILEWFS 902 (922)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~ 902 (922)
+|+++|+++|++..+....|+.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444445543
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=47.46 E-value=13 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=8.2
Q ss_pred CccEEEecCCCCCCCcc
Q 002435 410 KFNFVGLRSCNLNEFPN 426 (922)
Q Consensus 410 ~L~~L~L~~~~l~~lp~ 426 (922)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34444555555555543
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.04 E-value=13 Score=50.28 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=23.3
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCccc
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLH 640 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 640 (922)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888777777777777777777777665
No 94
>PF15179 Myc_target_1: Myc target protein 1
Probab=42.20 E-value=13 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.757 Sum_probs=18.4
Q ss_pred ceEEEEeehhhHHHHHHHHHHHHhhhHHHhhhh
Q 002435 872 WKIILIGYAGGLIVGVVLGLNFSIGILEWFSKK 904 (922)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (922)
|.-+.+++.+.+.+|+++|.++|. ...|+.|+
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~-LltwlSRR 49 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWA-LLTWLSRR 49 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 333455666677777777766655 34454443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.11 E-value=19 Score=40.87 Aligned_cols=62 Identities=31% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCCccEEecCCCcccccC--CccccCCCCCcEEECCCC--cCccCcchhhc--CCCCCCEEEcCCCccc
Q 002435 577 SGRSLMMIDLSDNLLQGRI--PRSLVNCSSLKFLDLGNN--QISGTFPSWLG--TLRELNVLILKSNKLH 640 (922)
Q Consensus 577 ~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~--~l~~L~~L~L~~N~l~ 640 (922)
+.+.+..++|++|++.... ..--...++|+.|+|++| .+... .++. +...|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 3456667778888765321 111123366777777777 33321 1222 2233555556666554
No 96
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=32.67 E-value=31 Score=38.51 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=17.1
Q ss_pred CceEEEEeehhhHHHHHHHHHHH
Q 002435 871 DWKIILIGYAGGLIVGVVLGLNF 893 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~ 893 (922)
...+++|++++.+|||.+||++.
T Consensus 366 tgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHHh
Confidence 44567788888888888888755
No 97
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=32.15 E-value=31 Score=30.04 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 002435 882 GLIVGVVLG 890 (922)
Q Consensus 882 ~~~~~~~~~ 890 (922)
+.++|.++.
T Consensus 87 p~VIGGLca 95 (126)
T PF03229_consen 87 PLVIGGLCA 95 (126)
T ss_pred hhhhhHHHH
Confidence 344444433
No 98
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.92 E-value=30 Score=32.27 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=11.1
Q ss_pred ehhhHHHHHHHHHHHHhh
Q 002435 879 YAGGLIVGVVLGLNFSIG 896 (922)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~ 896 (922)
++.|++..+++|+|++++
T Consensus 11 ~~ag~a~~~flgYciYFD 28 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYFD 28 (148)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 444555556678888664
No 99
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=28.75 E-value=49 Score=35.84 Aligned_cols=6 Identities=67% Similarity=0.961 Sum_probs=2.3
Q ss_pred hhhhhh
Q 002435 912 RRRIRR 917 (922)
Q Consensus 912 ~~~~~~ 917 (922)
||++|+
T Consensus 304 rr~Wr~ 309 (420)
T PTZ00473 304 RRRWRN 309 (420)
T ss_pred HHHHhh
Confidence 333343
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.69 E-value=41 Score=38.28 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=8.8
Q ss_pred ccEEECcCCCCCCC
Q 002435 434 LEVLDLSCNKIHGK 447 (922)
Q Consensus 434 L~~L~Ls~n~l~~~ 447 (922)
|++|-+.+|+++..
T Consensus 272 Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 272 LEELVLEGNPLCTT 285 (585)
T ss_pred HHHeeecCCccccc
Confidence 66666666666543
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.25 E-value=36 Score=46.58 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=28.1
Q ss_pred eCCCccccccCCccccCCCCCCEEeCCCCcCcc
Q 002435 759 SLANNSLHGHILSCLGNLTGLESLDLSNNKFSG 791 (922)
Q Consensus 759 ~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g 791 (922)
||++|+|+...+..|..|.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999988888888888899999999997764
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=24.76 E-value=1e+02 Score=21.46 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=3.2
Q ss_pred hhhHHHh
Q 002435 895 IGILEWF 901 (922)
Q Consensus 895 ~~~~~~~ 901 (922)
+.++.|.
T Consensus 28 ~iYRKw~ 34 (43)
T PF08114_consen 28 FIYRKWQ 34 (43)
T ss_pred HHHHHHH
Confidence 3345554
No 103
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.67 E-value=42 Score=26.54 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.5
Q ss_pred ehhhHHHHHHHHHHH
Q 002435 879 YAGGLIVGVVLGLNF 893 (922)
Q Consensus 879 ~~~~~~~~~~~~~~~ 893 (922)
+.+.+++|+++|+++
T Consensus 24 il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 24 ILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 104
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.28 E-value=49 Score=28.50 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=9.4
Q ss_pred eEEEEeehhhHHHHHHHHH
Q 002435 873 KIILIGYAGGLIVGVVLGL 891 (922)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~ 891 (922)
.+++|++++.+++++++++
T Consensus 67 aiagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGF 85 (96)
T ss_pred cEEEEEeehhhHHHHHHHH
Confidence 3455555544445555444
No 105
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.11 E-value=32 Score=31.98 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.1
Q ss_pred eehhhH
Q 002435 878 GYAGGL 883 (922)
Q Consensus 878 ~~~~~~ 883 (922)
|+++|+
T Consensus 53 GvVVGV 58 (154)
T PF04478_consen 53 GVVVGV 58 (154)
T ss_pred EEEecc
Confidence 333333
No 106
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.10 E-value=61 Score=19.94 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=5.6
Q ss_pred CCCCEEEcCCC
Q 002435 160 SNLVSLDLSHN 170 (922)
Q Consensus 160 ~~L~~L~Ls~n 170 (922)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 107
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=40 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=11.9
Q ss_pred EeehhhHHHHHHHHHHHHh
Q 002435 877 IGYAGGLIVGVVLGLNFSI 895 (922)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~ 895 (922)
+..++|+++|+++|+++.+
T Consensus 9 ~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 9 EYALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666677777766654
No 108
>PRK11677 hypothetical protein; Provisional
Probab=21.49 E-value=19 Score=32.99 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=0.0
Q ss_pred CCceEEEEeehhhHHHHHHHH
Q 002435 870 SDWKIILIGYAGGLIVGVVLG 890 (922)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~ 890 (922)
+.|+++++++++|+++|++++
T Consensus 1 M~W~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAM 21 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Done!