Query 002435
Match_columns 922
No_of_seqs 841 out of 5989
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 02:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3E-91 1E-95 853.4 46.5 710 24-850 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 6E-71 2E-75 674.2 40.6 650 111-834 50-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-59 2.2E-63 563.2 52.0 598 90-819 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4E-57 1.4E-61 547.5 50.8 595 115-841 8-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.1E-54 1E-58 515.1 43.9 521 138-819 35-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-53 2.2E-57 520.4 44.1 569 139-852 7-594 (844)
7 3t6q_A CD180 antigen; protein- 100.0 1.4E-52 4.6E-57 500.9 38.6 518 193-841 35-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-52 3.9E-57 501.6 37.1 518 136-819 32-563 (606)
9 4eco_A Uncharacterized protein 100.0 5.3E-53 1.8E-57 503.7 23.5 527 25-667 26-601 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-50 4.3E-55 483.9 39.0 536 89-678 15-570 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 5.3E-51 1.8E-55 493.1 30.2 496 24-639 264-863 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-50 1.8E-54 494.4 39.1 531 89-677 8-571 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.4E-47 4.7E-52 454.4 37.6 496 137-820 29-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9.4E-47 3.2E-51 444.9 35.9 490 197-819 11-515 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-46 5.2E-51 443.1 34.3 200 529-794 309-514 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 1.2E-45 4.1E-50 437.7 36.4 514 194-841 10-535 (570)
17 4eco_A Uncharacterized protein 100.0 1.2E-46 4E-51 449.0 16.6 267 160-445 81-390 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 4.8E-44 1.6E-48 432.4 28.8 390 273-814 435-864 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-43 1.2E-47 422.2 36.0 518 160-818 52-584 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-44 7.1E-49 421.6 23.7 459 194-818 3-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-42 4.6E-47 417.3 40.0 521 111-677 52-591 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-44 1E-48 420.4 24.0 462 163-677 3-493 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-42 4E-47 410.2 25.4 87 730-819 429-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-40 4.1E-45 393.0 26.2 460 137-674 32-518 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 4.3E-40 1.5E-44 375.0 20.5 157 214-398 10-166 (454)
26 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-40 3.2E-44 354.5 18.2 293 25-346 2-302 (313)
27 3v47_A TOLL-like receptor 5B a 100.0 2.4E-38 8.2E-43 363.8 29.6 399 195-676 14-419 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 8.8E-38 3E-42 359.1 32.1 200 529-820 211-414 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 1.1E-37 3.8E-42 355.1 26.4 357 189-624 9-380 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-37 7.5E-42 353.0 27.1 367 209-681 36-402 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-36 1.7E-40 341.9 30.1 325 226-667 29-353 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.1E-33 7.2E-38 322.9 36.8 148 108-276 43-190 (466)
33 1o6v_A Internalin A; bacterial 100.0 3.5E-33 1.2E-37 321.0 36.4 327 211-642 64-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2.4E-34 8.1E-39 332.4 25.8 258 529-841 103-360 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-35 2E-39 316.7 18.3 259 530-846 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 1E-31 3.5E-36 310.4 29.3 301 111-445 32-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.5E-36 299.4 28.3 350 60-473 3-354 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 8.1E-32 2.8E-36 302.4 24.5 322 214-679 44-365 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.4E-31 4.9E-36 317.1 24.8 321 214-678 50-370 (597)
40 4fmz_A Internalin; leucine ric 100.0 2.6E-30 9E-35 285.4 32.9 307 106-444 39-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 8.9E-31 3.1E-35 310.3 29.4 348 59-473 8-360 (597)
42 4fmz_A Internalin; leucine ric 100.0 4.6E-30 1.6E-34 283.5 31.2 149 213-372 42-190 (347)
43 4fcg_A Uncharacterized protein 100.0 9.6E-32 3.3E-36 293.2 14.8 283 24-347 22-313 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-32 1.4E-36 312.5 -0.2 136 160-301 3-156 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 2.3E-32 7.7E-37 314.6 -2.5 389 215-667 3-441 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-28 4.2E-33 269.9 25.9 288 410-812 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 4.9E-28 1.7E-32 265.0 29.0 82 730-812 241-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 5.8E-28 2E-32 264.4 26.7 269 111-395 52-329 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-27 6.3E-32 260.6 28.4 292 312-664 34-331 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 4.3E-28 1.5E-32 268.1 17.5 276 487-818 34-318 (353)
51 1wwl_A Monocyte differentiatio 99.9 1.7E-28 5.7E-33 266.1 10.7 249 505-816 43-311 (312)
52 2z80_A TOLL-like receptor 2, v 99.9 2.9E-27 1E-31 261.4 20.5 283 69-376 26-318 (353)
53 3ogk_B Coronatine-insensitive 99.9 1.9E-29 6.5E-34 299.9 2.4 230 129-367 66-326 (592)
54 3ogk_B Coronatine-insensitive 99.9 3.7E-29 1.3E-33 297.5 4.2 462 71-613 40-548 (592)
55 2z66_A Variable lymphocyte rec 99.9 4.1E-27 1.4E-31 254.8 19.7 232 531-818 29-265 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.7E-31 264.9 24.5 249 509-817 58-306 (452)
57 2z66_A Variable lymphocyte rec 99.9 6.8E-27 2.3E-31 253.1 19.4 276 73-399 7-288 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 2.7E-26 9.2E-31 261.6 24.3 249 509-817 47-295 (440)
59 3zyj_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 258.6 23.9 252 531-841 44-296 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 6.1E-26 2.1E-30 259.6 23.6 253 531-842 55-308 (452)
61 4fcg_A Uncharacterized protein 99.9 2.4E-26 8.1E-31 250.5 18.5 271 59-372 31-314 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 8.3E-26 2.8E-30 241.8 21.9 229 533-819 14-243 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5.1E-29 254.1 27.4 115 529-666 120-234 (622)
64 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-25 8.6E-30 238.0 19.1 225 88-348 14-238 (285)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 3.9E-29 255.0 25.6 203 529-819 100-302 (622)
66 1wwl_A Monocyte differentiatio 99.9 3.4E-27 1.2E-31 255.7 3.7 246 109-372 41-309 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.8E-31 251.5 7.1 251 525-819 29-281 (317)
68 2p1m_B Transport inhibitor res 99.9 4.4E-27 1.5E-31 279.7 -0.1 109 529-638 431-542 (594)
69 2z62_A TOLL-like receptor 4, v 99.9 3.3E-24 1.1E-28 228.1 21.5 226 535-819 12-242 (276)
70 2p1m_B Transport inhibitor res 99.9 7.5E-28 2.6E-32 286.4 -7.7 464 71-616 33-544 (594)
71 3oja_A Leucine-rich immune mol 99.9 5.7E-25 1.9E-29 252.8 13.6 222 529-818 33-255 (487)
72 3oja_A Leucine-rich immune mol 99.9 1.7E-25 5.7E-30 257.3 8.7 237 504-809 33-270 (487)
73 3o53_A Protein LRIM1, AGAP0063 99.9 9.8E-26 3.4E-30 244.9 3.8 242 186-467 29-271 (317)
74 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 219.0 22.1 29 70-99 2-30 (270)
75 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.2E-27 213.7 22.7 206 531-818 17-222 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 7.4E-23 2.5E-27 217.7 18.5 212 530-794 28-241 (276)
77 4glp_A Monocyte differentiatio 99.9 1.2E-23 4E-28 227.8 10.8 230 531-815 65-308 (310)
78 3goz_A Leucine-rich repeat-con 99.9 5.8E-24 2E-28 235.5 5.3 262 509-818 2-301 (362)
79 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.8E-27 214.8 14.4 210 132-359 37-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 9E-22 3.1E-26 210.1 20.4 205 550-816 6-210 (290)
81 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.4E-26 208.9 21.3 212 406-676 7-218 (290)
82 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.6E-28 229.8 3.7 236 70-321 34-282 (336)
83 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.7E-26 205.9 18.5 199 137-348 20-218 (272)
84 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.8E-28 234.9 1.9 265 128-392 24-337 (386)
85 4glp_A Monocyte differentiatio 99.9 2.4E-22 8.1E-27 217.5 8.5 229 507-791 66-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 8.8E-21 3E-25 198.4 19.7 182 556-818 15-196 (251)
87 2xwt_C Thyrotropin receptor; s 99.9 2.6E-21 8.8E-26 200.9 15.1 196 556-811 32-236 (239)
88 2ca6_A RAN GTPase-activating p 99.9 7.4E-23 2.5E-27 229.0 3.5 248 150-401 22-319 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 3E-21 1E-25 200.4 14.6 204 520-788 25-237 (239)
90 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.5E-25 201.9 20.4 210 534-816 23-232 (308)
91 3m19_A Variable lymphocyte rec 99.8 2.8E-20 9.5E-25 194.6 20.0 186 486-675 16-202 (251)
92 2ast_B S-phase kinase-associat 99.8 4.8E-22 1.7E-26 218.0 6.5 199 112-321 48-257 (336)
93 3goz_A Leucine-rich repeat-con 99.8 3.7E-22 1.3E-26 221.0 4.9 252 198-449 5-301 (362)
94 1h6u_A Internalin H; cell adhe 99.8 8.2E-20 2.8E-24 197.0 20.8 195 106-324 36-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 5.7E-20 2E-24 212.5 16.9 190 530-802 59-255 (571)
96 4ay9_X Follicle-stimulating ho 99.8 3E-20 1E-24 204.5 13.8 239 510-812 14-257 (350)
97 2o6s_A Variable lymphocyte rec 99.8 9.2E-20 3.2E-24 184.7 15.0 134 531-667 29-162 (208)
98 4ay9_X Follicle-stimulating ho 99.8 6.8E-19 2.3E-23 193.6 16.6 238 195-441 13-255 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.6E-19 8.8E-24 207.1 12.5 205 60-307 33-250 (571)
100 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 177.0 14.2 175 487-672 10-184 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.6E-23 177.4 14.4 163 508-677 14-177 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 2.5E-18 8.6E-23 175.4 14.2 162 509-677 15-176 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 9.3E-18 3.2E-22 171.2 15.7 155 487-642 14-168 (220)
104 2xot_A Amphoterin-induced prot 99.7 8.8E-18 3E-22 185.5 15.0 128 533-666 21-149 (361)
105 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5.2E-22 177.5 16.4 173 106-324 41-213 (291)
106 3e6j_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 168.8 16.1 155 508-670 22-176 (229)
107 1m9s_A Internalin B; cell inva 99.7 2.3E-17 7.9E-22 193.0 17.4 189 88-302 24-212 (605)
108 2xot_A Amphoterin-induced prot 99.7 5.4E-18 1.9E-22 187.2 10.6 184 487-673 21-209 (361)
109 2v9t_B SLIT homolog 2 protein 99.7 5.8E-17 2E-21 165.3 15.4 154 487-642 14-167 (220)
110 1h6t_A Internalin B; cell adhe 99.7 9E-17 3.1E-21 171.5 17.4 149 211-371 64-212 (291)
111 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.6E-23 208.9 2.9 230 26-305 129-359 (727)
112 1xeu_A Internalin C; cellular 99.7 3.3E-17 1.1E-21 172.0 12.7 168 556-816 20-187 (263)
113 1m9s_A Internalin B; cell inva 99.7 8.3E-17 2.8E-21 188.3 16.4 191 110-324 20-210 (605)
114 1dce_A Protein (RAB geranylger 99.7 1.8E-19 6.2E-24 209.7 -6.9 86 730-818 464-550 (567)
115 3e6j_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 161.6 17.1 154 486-642 21-174 (229)
116 1dce_A Protein (RAB geranylger 99.7 2.6E-19 8.8E-24 208.4 -6.7 122 216-342 442-567 (567)
117 1w8a_A SLIT protein; signaling 99.7 6E-17 2E-21 161.4 8.7 91 729-819 54-144 (192)
118 4ezg_A Putative uncharacterize 99.7 1.5E-16 5E-21 159.4 11.4 110 211-324 84-194 (197)
119 1w8a_A SLIT protein; signaling 99.7 2.7E-16 9.4E-21 156.6 13.2 138 533-676 11-149 (192)
120 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 157.1 12.8 151 190-348 43-194 (197)
121 1xeu_A Internalin C; cellular 99.7 8.1E-17 2.8E-21 169.0 8.9 124 529-666 18-141 (263)
122 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.1E-22 199.9 3.7 155 504-672 172-335 (727)
123 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.4E-20 150.4 13.6 139 533-678 13-151 (193)
124 3sb4_A Hypothetical leucine ri 99.6 4.1E-15 1.4E-19 161.9 11.9 100 556-659 227-327 (329)
125 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 142.3 13.5 133 532-670 9-141 (177)
126 2ell_A Acidic leucine-rich nuc 99.5 1.1E-14 3.8E-19 141.6 10.3 134 530-666 24-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.5 1.5E-14 5.1E-19 140.7 11.1 132 215-348 24-160 (168)
128 3sb4_A Hypothetical leucine ri 99.5 5E-15 1.7E-19 161.2 8.1 292 150-464 13-327 (329)
129 2wfh_A SLIT homolog 2 protein 99.5 3.6E-14 1.2E-18 141.1 13.6 128 509-642 14-141 (193)
130 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5E-19 137.6 9.1 108 215-324 17-126 (149)
131 2o6r_A Variable lymphocyte rec 99.5 7.2E-14 2.5E-18 137.1 13.1 131 508-643 10-140 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 135.4 9.4 128 238-367 16-148 (149)
133 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 133.3 10.6 90 729-818 30-119 (170)
134 1ds9_A Outer arm dynein; leuci 99.4 2E-15 6.7E-20 151.3 -4.9 82 729-814 93-185 (198)
135 3g39_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 130.0 11.9 109 557-670 11-119 (170)
136 2r9u_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 130.4 10.6 90 729-818 33-122 (174)
137 4fdw_A Leucine rich hypothetic 99.4 7.1E-12 2.4E-16 139.2 20.8 249 209-472 130-384 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 132.3 8.5 132 529-666 18-153 (176)
139 4fs7_A Uncharacterized protein 99.4 3.8E-12 1.3E-16 142.1 18.0 79 529-611 296-374 (394)
140 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.5E-16 137.9 20.9 216 217-443 159-381 (401)
141 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.3E-17 126.8 12.0 108 558-670 15-122 (174)
142 1ds9_A Outer arm dynein; leuci 99.4 1.5E-14 5.2E-19 144.8 -2.8 152 506-666 19-185 (198)
143 1a9n_A U2A', U2A'; complex (nu 99.4 1E-12 3.5E-17 128.6 8.4 105 240-348 43-153 (176)
144 4fs7_A Uncharacterized protein 99.3 1.5E-11 5.3E-16 137.1 18.2 61 232-294 64-124 (394)
145 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 131.6 11.5 114 560-678 13-128 (347)
146 3un9_A NLR family member X1; l 99.2 1.4E-12 4.9E-17 143.4 -1.9 161 136-302 72-254 (372)
147 2ifg_A High affinity nerve gro 99.2 4E-11 1.4E-15 131.4 9.5 87 729-816 31-118 (347)
148 4gt6_A Cell surface protein; l 99.2 3E-09 1E-13 118.5 24.3 131 525-665 260-390 (394)
149 3un9_A NLR family member X1; l 99.1 1.8E-12 6.2E-17 142.6 -3.1 136 215-350 101-254 (372)
150 4gt6_A Cell surface protein; l 99.1 6.4E-09 2.2E-13 115.8 22.4 107 526-639 284-390 (394)
151 2ra8_A Uncharacterized protein 98.8 5.8E-09 2E-13 113.5 6.8 163 182-370 163-341 (362)
152 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 110.8 8.2 137 233-372 166-320 (362)
153 4h09_A Hypothetical leucine ri 98.7 6E-07 2.1E-11 99.3 21.5 104 529-636 239-342 (379)
154 4h09_A Hypothetical leucine ri 98.7 7.4E-07 2.5E-11 98.6 21.3 100 525-628 258-357 (379)
155 3rw6_A Nuclear RNA export fact 98.5 1.4E-09 4.9E-14 111.9 -6.1 22 71-92 76-97 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5E-12 92.3 3.5 41 132-172 32-77 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.3E-12 97.4 2.7 83 734-818 148-237 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 2E-07 6.7E-12 91.4 3.7 63 237-299 91-163 (185)
159 3e4g_A ATP synthase subunit S, 97.8 6.8E-06 2.3E-10 78.2 2.5 85 136-226 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.4E-10 76.3 3.8 82 240-321 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00063 2.2E-08 65.9 5.2 87 211-297 66-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00085 2.9E-08 65.0 5.8 88 134-224 39-135 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0016 5.4E-08 58.9 6.4 36 778-813 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0022 7.6E-08 58.0 5.8 57 732-790 11-68 (130)
165 2ks1_B Epidermal growth factor 81.9 0.91 3.1E-05 31.4 2.6 9 880-888 14-22 (44)
166 2l2t_A Receptor tyrosine-prote 79.3 0.99 3.4E-05 31.1 2.0 7 881-887 14-20 (44)
167 2lz0_A Uncharacterized protein 41.5 24 0.00082 29.4 4.0 45 591-636 8-52 (100)
168 2lz0_A Uncharacterized protein 36.4 59 0.002 27.0 5.6 47 566-613 7-53 (100)
169 2klu_A T-cell surface glycopro 33.6 19 0.00065 26.8 1.8 18 883-900 12-29 (70)
170 2k1k_A Ephrin type-A receptor 29.6 36 0.0012 22.6 2.4 13 881-893 14-26 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-91 Score=853.37 Aligned_cols=710 Identities=31% Similarity=0.430 Sum_probs=550.5
Q ss_pred CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCc---
Q 002435 24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGF--- 100 (922)
Q Consensus 24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~--- 100 (922)
+.+.++|++||++||+++.++. .+++|+. +++||.|+||+|+ .++|++|+|+++.+.|.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-------------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~ 68 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-------------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSA 68 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-------------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHH
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-------------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCc
Confidence 3467899999999999998542 5789986 6899999999998 58999999999999997
Q ss_pred ccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCch--hhcCCCCCCEEEcCCCCCCCcccc
Q 002435 101 INSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPS--EILELSNLVSLDLSHNSYYNLIEL 178 (922)
Q Consensus 101 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~ 178 (922)
+++ .+.++++|+.++++.+.+. .+|+.++++++|++|||++|.+.|.+|. .++++++|++|++++|.+.
T Consensus 69 l~~--~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~----- 139 (768)
T 3rgz_A 69 VSS--SLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD----- 139 (768)
T ss_dssp HHH--HTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE-----
T ss_pred cCh--hHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC-----
Confidence 665 8899999999999999873 3678899999999999999999999998 9999999999999999743
Q ss_pred cCCChhHH-HhcCCCCCEEEcCCCcCCCCCchh---ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCC
Q 002435 179 KEPNLGNL-VKKLTNLKELALGGVTISSPIPHS---LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254 (922)
Q Consensus 179 ~~~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 254 (922)
+.+|.. +.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.
T Consensus 140 --~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~ 215 (768)
T 3rgz_A 140 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 215 (768)
T ss_dssp --CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSC
T ss_pred --CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCC
Confidence 223332 378999999999999999988877 88999999999999999877654 8899999999999999988
Q ss_pred cccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC
Q 002435 255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334 (922)
Q Consensus 255 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 334 (922)
+|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..+...
T Consensus 216 ~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh
Confidence 877 999999999999999999999999999999999999999999877765 88999999999999998999888775
Q ss_pred -CCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCC-Ccc
Q 002435 335 -RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQ-KFN 412 (922)
Q Consensus 335 -~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~ 412 (922)
++|++|++++|++++.+|..++.+++|++|++++|.+.+.++...+ ..+++|++|++++|.+++..+..+..++ +|+
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999988887655 7888899999998888765544444443 555
Q ss_pred EEEecCCCCC-CCcccccC--CCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceE
Q 002435 413 FVGLRSCNLN-EFPNFLKN--QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489 (922)
Q Consensus 413 ~L~L~~~~l~-~lp~~l~~--~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 489 (922)
.|++++|.++ .+|..+.. +++|++|++++|++++.+|..+. .+++|++|++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L------------------------ 425 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHL------------------------ 425 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTCCEEEC------------------------
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh--cCCCCCEEEC------------------------
Confidence 5555555554 34444333 44555555555555555555544 4444444444
Q ss_pred eccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccC
Q 002435 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569 (922)
Q Consensus 490 ~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 569 (922)
++|.+++.+|..+.. +++|+.|++++|.+++.+|..+..++ +|++|++++|++++
T Consensus 426 -----------------------s~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 426 -----------------------SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTG 480 (768)
T ss_dssp -----------------------CSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCS
T ss_pred -----------------------cCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccC
Confidence 444444455555555 66677777777777666666666665 57777777777766
Q ss_pred CCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCC
Q 002435 570 SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649 (922)
Q Consensus 570 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 649 (922)
.+|..+..+++|++|++++|++++.+|.++..+++|++|+|++|++++.+|..++.+++|++|++++|++.|.+|...
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-- 558 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-- 558 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG--
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH--
Confidence 666666667777777777777766666666667777777777777766667667777777777777777766666543
Q ss_pred CCCCCccE---------EEccCCc-------------CCCCCChhhhhccccceecccccccccccccccchhccccccc
Q 002435 650 CGFPELRI---------IDLSNNR-------------FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALG 707 (922)
Q Consensus 650 ~~l~~L~~---------LdLs~N~-------------l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 707 (922)
.....+.. ..+.++. +.|..|.. +..+..+..+++....+.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~---------------- 621 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITSRVYG---------------- 621 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG-GGGGGGTCCSCTTSCEEE----------------
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchh-hhccccccccccccceec----------------
Confidence 12222222 2222221 12222211 111111111111111000
Q ss_pred eeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCC
Q 002435 708 IYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNN 787 (922)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 787 (922)
+.........+.++.|||++|+++|.+|.+|+++++|+.|||++|+++|.||+.|+++++|++||||+|
T Consensus 622 -----------g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 622 -----------GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp -----------EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred -----------ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 011111122467999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCC
Q 002435 788 KFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKECENDE 850 (922)
Q Consensus 788 ~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~~~~~c~~~~ 850 (922)
+++|.||..++++++|++||+|+|+|+|+||.++||.+|...+|.|||++||.|++ .|....
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999999999999999999999999987 786543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-71 Score=674.17 Aligned_cols=650 Identities=29% Similarity=0.397 Sum_probs=466.3
Q ss_pred CCCCeeeCCCCCCCCC--CCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH--H
Q 002435 111 VHLEWLDLAFNYFICS--EIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN--L 186 (922)
Q Consensus 111 ~~L~~L~Ls~n~~~~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~--~ 186 (922)
.+++.|||+++.+.+. .+|+.++++++|+.++++.+.+. .+|..++++++|++|||++|.+. +.+|. .
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~ 121 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLS-------GPVTTLTS 121 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEE-------EEGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCC-------CcCCChHH
Confidence 4677888888877642 15677888888888888887663 35677888888888888888732 33444 6
Q ss_pred HhcCCCCCEEEcCCCcCCCCCchhc-cCCCCCCEEeccCccCCccCccc---cCCCCCCCEEeCcCCCCCCCcccccCCC
Q 002435 187 VKKLTNLKELALGGVTISSPIPHSL-ANLSSLTLLSLSGCELRGRIPSL---LGNLTKLMYLDLSFNNLLGELPTSIGNL 262 (922)
Q Consensus 187 ~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 262 (922)
+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. ..+
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC
Confidence 6777777777777777766666554 66777777777777777666655 66677777777777776655442 666
Q ss_pred CCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEec
Q 002435 263 DCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDI 342 (922)
Q Consensus 263 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 342 (922)
++|++|++++|.+++.+|. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 7777777777777665555 666777777777777776666666666777777777777666655543 5666666666
Q ss_pred CCCccCccCchhhcCC-CCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCC
Q 002435 343 SECKFSSQIPSSLRNL-AQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNL 421 (922)
Q Consensus 343 s~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l 421 (922)
++|++++.+|..+... ++|++|++++|.+++.++.. + ..+++|++|++++|.+.+
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~-~~l~~L~~L~L~~n~l~~---------------------- 332 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-F-GSCSLLESLALSSNNFSG---------------------- 332 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-G-GGCTTCCEEECCSSEEEE----------------------
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-H-hcCCCccEEECCCCcccC----------------------
Confidence 6666666666665543 66666666666666554432 1 455666666666665552
Q ss_pred CCCccc-ccCCCCccEEECcCCCCCCCCCccccccCCC-CccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCC
Q 002435 422 NEFPNF-LKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQ-NFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499 (922)
Q Consensus 422 ~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~ 499 (922)
.+|.. +..+++|++|++++|++++.+|..+. .++ +|++|++++|.+++..+.....
T Consensus 333 -~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~~------------------- 390 (768)
T 3rgz_A 333 -ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQ------------------- 390 (768)
T ss_dssp -ECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTTC-------------------
T ss_pred -cCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhhh-------------------
Confidence 33332 44555555566666655555555544 333 5555555555554433222111
Q ss_pred CCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCC
Q 002435 500 LPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGR 579 (922)
Q Consensus 500 ~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~ 579 (922)
...++++.|++++|.+++.+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++
T Consensus 391 --~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 391 --NPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp --STTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCT
T ss_pred --cccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCC
Confidence 11345777777777888888888887 99999999999999999999999998 799999999999999999999999
Q ss_pred CccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEE
Q 002435 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIID 659 (922)
Q Consensus 580 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ld 659 (922)
+|++|++++|++++.+|..+.++++|++|+|++|++++.+|.+++.+++|++|+|++|++.+.+|..+ ..+++|+.||
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~ 544 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLD 544 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEE
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998776 6789999999
Q ss_pred ccCCcCCCCCChhhhhccccceecccc-cc--cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEe
Q 002435 660 LSNNRFTGKLPSKYFQCWNAMQVVNTS-EL--RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVIL 736 (922)
Q Consensus 660 Ls~N~l~g~ip~~~~~~~~~l~~l~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 736 (922)
+++|+++|.+|..++.....+ .++.. .. .+............ .... ....+...........+..+++
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHG------AGNL--LEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCB-CCSTTCSCEEEEEECCSCCTTCCS------SEEE--EECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCccCCcCChHHhcccchh-hhhccccccccccccccccccccc------cccc--cccccccchhhhcccccccccc
Confidence 999999999998876543322 22211 11 01100000000000 0000 0000000000111234566788
Q ss_pred ccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccC
Q 002435 737 SSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP 816 (922)
Q Consensus 737 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~ 816 (922)
+.|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.||||+|+++|.||..+++++.|++||+|+|+++|.
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCccccCCC
Q 002435 817 IPQGN-QFPTFDKTSFNGN 834 (922)
Q Consensus 817 iP~~~-~~~~~~~~s~~gn 834 (922)
||... .+..+......+|
T Consensus 696 ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCGGGGGCCCCSEEECCSS
T ss_pred CChHHhCCCCCCEEECcCC
Confidence 99752 2333333334444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-59 Score=563.19 Aligned_cols=598 Identities=23% Similarity=0.247 Sum_probs=389.0
Q ss_pred EECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCC
Q 002435 90 LDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSH 169 (922)
Q Consensus 90 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 169 (922)
++.++++++.. +. .+. +++++|+|++|.+.+. .+..++++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 9 ~~cs~~~L~~i-p~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQV-PD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSSC-CS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCcccc-cc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 45555555443 11 222 5666777776666542 334566666666666666666666666666666666666666
Q ss_pred CCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCC
Q 002435 170 NSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFN 249 (922)
Q Consensus 170 n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 249 (922)
|.+ ++..+..++++++|++|++++|++.+..|..++++++|++|++++|
T Consensus 83 n~l-------------------------------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 83 NEL-------------------------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp SCC-------------------------------CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred Ccc-------------------------------CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 654 3333334555555555555555555444445555555555555555
Q ss_pred CCCCCcccccCCCCCCcEEEcccCCCCCCchhhhh--CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc
Q 002435 250 NLLGELPTSIGNLDCLKRLDISWNELSGELPASIG--NLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327 (922)
Q Consensus 250 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (922)
.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|..+..+++|+.+++.++.+.+..
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 211 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH
T ss_pred cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhh
Confidence 55555555555555555555555555544444332 3355555555555555555555555555555555555443211
Q ss_pred ccccc---CCCCCceEecCCCccCccCchhhcCCCC--ccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccccccc
Q 002435 328 PASFG---NLRSLEGLDISECKFSSQIPSSLRNLAQ--LKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTK 402 (922)
Q Consensus 328 p~~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 402 (922)
...+. ..++|++|++++|.+.+..|..+..++. |++|++++|.+++..+ ..+ ..+++|++|++++|.+.+..+
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSF-AWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTT-TTCTTCCEEECCSCCBSEECT
T ss_pred HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccc-cCcccccEeeCCCCccCccCh
Confidence 11110 2345666666666665555555555433 6666666665553322 222 455666666666666665555
Q ss_pred ccccCCCCccEEEecCCCCC------CCcc----cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCcccc
Q 002435 403 AIFNTSQKFNFVGLRSCNLN------EFPN----FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIG 472 (922)
Q Consensus 403 ~~~~~~~~L~~L~L~~~~l~------~lp~----~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~ 472 (922)
..|..+++|+.|++++|... .+|. .+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+..
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSL 367 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCC
T ss_pred hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc--cccCCcEEECCCCchhh
Confidence 55556666666666554322 3333 567788888888888888887777666 77888888888776532
Q ss_pred ccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhh
Q 002435 473 FYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDN 552 (922)
Q Consensus 473 ~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~ 552 (922)
.......+ . . .. .++|+.|++++|++++..|..+..
T Consensus 368 ~~l~~~~f-------------------------------------~-----~-~~-~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 368 RTLTNETF-------------------------------------V-----S-LA-HSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp CEECTTTT-------------------------------------G-----G-GT-TSCCCEEECTTSCCCEECTTTTTT
T ss_pred hhcchhhh-------------------------------------c-----c-cc-cCcCceEECCCCCCCeEChhhhhC
Confidence 21110000 0 0 00 356888888888888888888887
Q ss_pred ccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCc--cCcchhhcCCCCC
Q 002435 553 FSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQIS--GTFPSWLGTLREL 629 (922)
Q Consensus 553 l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L 629 (922)
++ +|+.|++++|.+++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..|..+++|
T Consensus 404 l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 404 LG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp CT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 77 68888888888877555 67888888888888888888888888888888888888888876 5678888888888
Q ss_pred CEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709 (922)
Q Consensus 630 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 709 (922)
++|++++|++++..+..+ .++++|+.|++++|++++..+.. +.. .
T Consensus 483 ~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~----------------~---------------- 527 (680)
T 1ziw_A 483 TILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPG----------------G---------------- 527 (680)
T ss_dssp CEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STT----------------S----------------
T ss_pred CEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccC----------------C----------------
Confidence 888888888887765544 66788888888888876421110 000 0
Q ss_pred eeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789 (922)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 789 (922)
....-...+.|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|.++++|+.|+|++|+|
T Consensus 528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 000001135689999999999955555799999999999999999988888899999999999999999
Q ss_pred cccCccccc-CCCCCCeEeccCCccccCCCC
Q 002435 790 SGQIPQQLV-DLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 790 ~g~ip~~l~-~L~~L~~L~ls~N~lsg~iP~ 819 (922)
++.+|..+. .+++|+.+++++|++.+..+.
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999998888 789999999999999988774
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-57 Score=547.47 Aligned_cols=595 Identities=21% Similarity=0.207 Sum_probs=412.4
Q ss_pred eeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCC
Q 002435 115 WLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLK 194 (922)
Q Consensus 115 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~ 194 (922)
.+|.+++.++ .+|..+. +++++|+|++|.+.+..+..++++++|++|++++|
T Consensus 8 ~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------ 59 (680)
T 1ziw_A 8 VADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN------------------------ 59 (680)
T ss_dssp EEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS------------------------
T ss_pred eeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC------------------------
Confidence 4555555542 2444333 45555555555554444444444444444444444
Q ss_pred EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC
Q 002435 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE 274 (922)
Q Consensus 195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 274 (922)
.+++..|..++++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 60 -------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 60 -------TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp -------CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred -------ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence 4555567777788888888888888876555567888888888888888877766778888888888888888
Q ss_pred CCCCchhhhhCCCCCCEEEccCCCCCCCCccccc--CCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCc
Q 002435 275 LSGELPASIGNLASLEQLELSLNRFRGKTPHSMG--NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIP 352 (922)
Q Consensus 275 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 352 (922)
+++..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+++..|..+..+++|+.|+++++.+.+...
T Consensus 133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 8777777777788888888888877766665543 44677777777777776666667777777777777766543222
Q ss_pred hhh---cCCCCccEEEccCCCCcCccchhhhhhccC--CcceEeCcCccccccccccccCCCCccEEEecCCCCCC-Ccc
Q 002435 353 SSL---RNLAQLKFLEFSHNNFSGPIDLDMFLVNFK--HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNE-FPN 426 (922)
Q Consensus 353 ~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-lp~ 426 (922)
..+ ...++|+.|++++|.+.+..+.. + ..++ +|++|++++|.++++.+..|..+++|++|++++|.++. .|.
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTT-F-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTT-T-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred HHHHHHhhhccccEEEccCCcccccChhH-h-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 111 12356666666666665443322 2 2332 36666666666665555555555555555555555542 233
Q ss_pred cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506 (922)
Q Consensus 427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~ 506 (922)
.+..+++|++|++++|...+.++.. .++ .+........++
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~----~lp------------------------------------~i~~~~~~~l~~ 330 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLA----SLP------------------------------------KIDDFSFQWLKC 330 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC----------CC------------------------------------EECTTTTTTCTT
T ss_pred hhcCCCCccEEeccchhhhcccccc----ccc------------------------------------ccChhhcccCCC
Confidence 4445555555555544333211100 000 000001112456
Q ss_pred CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC--CCchhhhcc-CcccEEEcCCCcccCCCcccccCCCCccE
Q 002435 507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL--LPQCLDNFS-DHLSILDLQHNKFCGSIPQTFLSGRSLMM 583 (922)
Q Consensus 507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 583 (922)
++.+++++|.+++..+..+.. +++|++|++++|.+... .+..+..+. .+|+.|++++|++++..|..|..+++|++
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTT-CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCCChhHhcc-ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 666677777776655555554 88999999999976432 223333331 36999999999999999999999999999
Q ss_pred EecCCCcccccCC-ccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccc--cCCCCCCCCCCCCccEEEc
Q 002435 584 IDLSDNLLQGRIP-RSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHG--MIREPNTGCGFPELRIIDL 660 (922)
Q Consensus 584 L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~LdL 660 (922)
|++++|++++.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.+ .+|..+ ..+++|+.|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~L 487 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDL 487 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEEC
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEEC
Confidence 9999999988665 689999999999999999999999999999999999999999974 445544 78899999999
Q ss_pred cCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccc
Q 002435 661 SNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR 740 (922)
Q Consensus 661 s~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~ 740 (922)
++|++++ +|...+.. .+.|+.|+|++|+
T Consensus 488 s~N~l~~-i~~~~~~~---------------------------------------------------l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 488 SNNNIAN-INDDMLEG---------------------------------------------------LEKLEILDLQHNN 515 (680)
T ss_dssp CSSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCCCCc-CChhhhcc---------------------------------------------------ccccCEEeCCCCC
Confidence 9999985 44333322 2458889999999
Q ss_pred ccccCc--------ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 002435 741 FDGEIP--------TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812 (922)
Q Consensus 741 l~g~ip--------~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~ 812 (922)
+++..+ ..++++++|++|+|++|+++...+..|+++++|+.|||++|+|++..+..|.++++|+.|++++|+
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 987532 247899999999999999997666789999999999999999999888889999999999999999
Q ss_pred cccCCCCCC--CCCCCCccccCCCcCCCCCC
Q 002435 813 LTGPIPQGN--QFPTFDKTSFNGNLGLCGKP 841 (922)
Q Consensus 813 lsg~iP~~~--~~~~~~~~s~~gn~~lcg~~ 841 (922)
+++..|... .+..+....+.|||+.|+++
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999877431 34556667788999999875
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-54 Score=515.12 Aligned_cols=521 Identities=21% Similarity=0.197 Sum_probs=331.1
Q ss_pred CCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCC
Q 002435 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL 217 (922)
Q Consensus 138 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 217 (922)
+++|+|++|.+.+..|..++++++|++|++++|++..+ .|..+.++++|++|++++|.+.+..|..++++++|
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-------HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCcccee-------ChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 44444444444444444444444444444444442111 11223333333333333334445556667777777
Q ss_pred CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC--EEEcc
Q 002435 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE--QLELS 295 (922)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~ 295 (922)
++|++++|++++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+ +|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 7777777777766566677777777777777777764433444477777777777777766666677777777 67777
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCcc
Q 002435 296 LNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPI 375 (922)
Q Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 375 (922)
+|.+.+..|..+.. .+|+.|++++|. .++..+..+..++...+....+. .+... .+
T Consensus 188 ~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~---------~i 243 (606)
T 3t6q_A 188 GNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-----------DMDDE---------DI 243 (606)
T ss_dssp TCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-----------TSCCC---------CC
T ss_pred CCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc-----------ccccc---------cc
Confidence 77776655554433 456666666554 22333333333332222211111 11111 11
Q ss_pred chhhhhhcc--CCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435 376 DLDMFLVNF--KHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI 453 (922)
Q Consensus 376 ~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 453 (922)
+...+ ..+ .+|+.|++++|.++++++..|..+++|++|++++|.++.+|..+..+++|++|++++|++.+..|..+.
T Consensus 244 ~~~~~-~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 244 SPAVF-EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp CGGGG-GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred ChhHh-chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 11111 222 267888888888888777777777888888888888777777777777777777777777655554443
Q ss_pred ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE 533 (922)
Q Consensus 454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~ 533 (922)
. +++|+
T Consensus 323 --~------------------------------------------------------------------------l~~L~ 328 (606)
T 3t6q_A 323 --N------------------------------------------------------------------------FPSLT 328 (606)
T ss_dssp --G------------------------------------------------------------------------CTTCS
T ss_pred --c------------------------------------------------------------------------cCcCC
Confidence 3 34444
Q ss_pred eEEccCccCCCCCCc-hhhhccCcccEEEcCCCcccCCC--cccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 534 ILDLSYNNLSGLLPQ-CLDNFSDHLSILDLQHNKFCGSI--PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 534 ~L~Ls~N~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
+|++++|.+.+.+|. .+..++ +|++|++++|++++.. +..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 445555544433332 244444 4555555555555444 455666666666666666666666666666666667777
Q ss_pred CCCcCccCcch-hhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CCh-hhhhccccceeccccc
Q 002435 611 GNNQISGTFPS-WLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPS-KYFQCWNAMQVVNTSE 687 (922)
Q Consensus 611 s~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~-~~~~~~~~l~~l~~~~ 687 (922)
++|++++..|. .+..+++|++|++++|++.+..|..+ ..+++|+.|++++|++++. +|. ..+.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------ 473 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQ------------ 473 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGGG------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhhc------------
Confidence 66666655443 36666677777777777666655444 4567777777777776531 110 0000
Q ss_pred ccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccc
Q 002435 688 LRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767 (922)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~ 767 (922)
..+.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++
T Consensus 474 ---------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 474 ---------------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp ---------------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred ---------------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 13568899999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435 768 HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 768 ~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~ 819 (922)
.+|+.+.+++.| .|+|++|++++.+|..+..+++|+.+++++|++.+..+.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999 999999999999999999999999999999999987763
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-53 Score=520.37 Aligned_cols=569 Identities=23% Similarity=0.266 Sum_probs=371.7
Q ss_pred CEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCC-chhccCCCCC
Q 002435 139 SYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPI-PHSLANLSSL 217 (922)
Q Consensus 139 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L 217 (922)
+..|.+++++ ..+|. -.++|++|||++|.+..+. +..+.++++|++|++++|...+.+ |.++.++++|
T Consensus 7 ~~~dcs~~~L-~~vP~---lp~~l~~LdLs~N~i~~i~-------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L 75 (844)
T 3j0a_A 7 RIAFYRFCNL-TQVPQ---VLNTTERLLLSFNYIRTVT-------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75 (844)
T ss_dssp EEEEESCCCS-SCCCS---SCTTCCEEEEESCCCCEEC-------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTC
T ss_pred eEEEccCCCC-CCCCC---CCCCcCEEECCCCcCCccC-------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCC
Confidence 4567777777 45565 4577888888888754331 234567777777777777554444 5667777777
Q ss_pred CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccc--cCCCCCCcEEEcccCCCCCCch-hhhhCCCCCCEEEc
Q 002435 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTS--IGNLDCLKRLDISWNELSGELP-ASIGNLASLEQLEL 294 (922)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L 294 (922)
++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|.. ++++++|++|++++|.+++..+ ..+.++++|++|++
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 77777777777666777777777777777777776655443 6677777777777777765443 45677777777777
Q ss_pred cCCCCCCCCcccccCC--CCCcEEEeeccCCCCcccccccCCCC------CceEecCCCccCccCchhhcCC---CCccE
Q 002435 295 SLNRFRGKTPHSMGNF--TRLYWLSLASNDFSGELPASFGNLRS------LEGLDISECKFSSQIPSSLRNL---AQLKF 363 (922)
Q Consensus 295 ~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~ 363 (922)
++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+.+..+..+... .+++.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 7777776666666655 66777777777766666655555444 6666666666665555444322 34555
Q ss_pred EEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCC--CCccEEEecCCCCCCC-cccccCCCCccEEECc
Q 002435 364 LEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTS--QKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLS 440 (922)
Q Consensus 364 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls 440 (922)
+.++.+..... +..+.+.......|..+ ++|+.|++++|.+..+ |..+..+++|+.|+++
T Consensus 236 L~l~~~~~~~~-----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 236 LILAHHIMGAG-----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp EECCSSCCBCS-----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred eeccccccccc-----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 55543322100 01122222222222221 3444444444444422 2334444444555555
Q ss_pred CCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCc
Q 002435 441 CNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGK 520 (922)
Q Consensus 441 ~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ 520 (922)
+|++.+..|..+. .+++|++|++++| .+++.
T Consensus 299 ~n~i~~~~~~~~~--~l~~L~~L~Ls~N-----------------------------------------------~l~~~ 329 (844)
T 3j0a_A 299 YNKINKIADEAFY--GLDNLQVLNLSYN-----------------------------------------------LLGEL 329 (844)
T ss_dssp SCCCCEECTTTTT--TCSSCCEEEEESC-----------------------------------------------CCSCC
T ss_pred CCcCCCCChHHhc--CCCCCCEEECCCC-----------------------------------------------CCCcc
Confidence 5544444443333 3344444444333 33333
Q ss_pred CChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCcccc
Q 002435 521 IPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLV 600 (922)
Q Consensus 521 ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 600 (922)
.|..+.. +++|+.|++++|++++..+..|..++ +|++|++++|.+++. ..+++|+.|++++|+++. +|..
T Consensus 330 ~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~-- 399 (844)
T 3j0a_A 330 YSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI-- 399 (844)
T ss_dssp CSCSCSS-CTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC--
T ss_pred CHHHhcC-CCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc--
Confidence 3333333 67788888888888877777777777 788888888888743 237788888999988883 4433
Q ss_pred CCCCCcEEECCCCcCccCc-chhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435 601 NCSSLKFLDLGNNQISGTF-PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA 679 (922)
Q Consensus 601 ~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~ 679 (922)
..+++.|++++|++++.. +..+..+++|++|+|++|++++..+... ...+++|+.|++++|.+++..+.....
T Consensus 400 -~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~~---- 473 (844)
T 3j0a_A 400 -NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELCW---- 473 (844)
T ss_dssp -CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCCS----
T ss_pred -ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccch----
Confidence 467889999999988753 3446688999999999999987654322 245788999999999887433211000
Q ss_pred ceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEe
Q 002435 680 MQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLS 759 (922)
Q Consensus 680 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ 759 (922)
..+. ..+.|+.|||++|++++.+|..|..+++|+.||
T Consensus 474 ------------------------------------------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 474 ------------------------------------------DVFE-GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp ------------------------------------------SCSS-CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred ------------------------------------------hhhc-CcccccEEECCCCcccccChhHccchhhhheeE
Confidence 0000 135688999999999999999999999999999
Q ss_pred CCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCC
Q 002435 760 LANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCG 839 (922)
Q Consensus 760 Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg 839 (922)
|++|++++.+|..+. ++|+.|||++|+|++.+|..+. .|+.+++++|++.+.++.. .|......++..+||
T Consensus 511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~ 581 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAG 581 (844)
T ss_dssp EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCC
T ss_pred CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCccccc
Confidence 999999998888777 8999999999999999998765 6889999999999887632 343333456777888
Q ss_pred CCCCCCCCCCCCC
Q 002435 840 KPLPKECENDEAP 852 (922)
Q Consensus 840 ~~~~~~c~~~~~~ 852 (922)
.|....|..+...
T Consensus 582 ~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 582 PPADIYCVYPDSF 594 (844)
T ss_dssp CGGGCCCSSCSSS
T ss_pred ccccCccCCchhh
Confidence 7777788776543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-52 Score=500.87 Aligned_cols=518 Identities=18% Similarity=0.170 Sum_probs=369.8
Q ss_pred CCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEccc
Q 002435 193 LKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISW 272 (922)
Q Consensus 193 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 272 (922)
+++|++++|.+++..|..++++++|++|++++|++.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 33444444444444455666666666666666666666666666666677777766666666666666667777777777
Q ss_pred CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc--eEecCCCccCcc
Q 002435 273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE--GLDISECKFSSQ 350 (922)
Q Consensus 273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~ 350 (922)
|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+..+++|+ +|++++|.+.+.
T Consensus 115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 766655455666667777777777766654433444466777777777776666566666677776 667777777665
Q ss_pred CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc-cccc
Q 002435 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLK 429 (922)
Q Consensus 351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp-~~l~ 429 (922)
.|..+.. .+|+.|++++|... + .....+..+....+....+..... ..++ ..+.
T Consensus 195 ~~~~~~~-~~L~~L~l~~~~~~---~--~~~~~l~~~~l~~l~~~~~~~~~~-------------------~~i~~~~~~ 249 (606)
T 3t6q_A 195 EPGAFDS-AVFQSLNFGGTQNL---L--VIFKGLKNSTIQSLWLGTFEDMDD-------------------EDISPAVFE 249 (606)
T ss_dssp CTTTTTT-CEEEEEECTTCSCH---H--HHHHHTTTCEEEEEECCCCTTSCC-------------------CCCCGGGGG
T ss_pred ChhHhhh-ccccccccCCchhH---H--HHhhhccccchhheechhhccccc-------------------cccChhHhc
Confidence 5544433 56777777766421 1 111333333322222221111100 0111 1111
Q ss_pred CCC--CccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCC
Q 002435 430 NQH--YLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQT 507 (922)
Q Consensus 430 ~~~--~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l 507 (922)
.+. +|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~------------------------------------ 291 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFH--CFSGLQELDLTATHLS------------------------------------ 291 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTT--TCTTCSEEECTTSCCS------------------------------------
T ss_pred hhhcCceeEEEeecCccCccCHHHhc--cccCCCEEeccCCccC------------------------------------
Confidence 111 577777777777766665554 5666666666666553
Q ss_pred ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEec
Q 002435 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDL 586 (922)
Q Consensus 508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L 586 (922)
.+|..+.. +++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++
T Consensus 292 ------------~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 292 ------------ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp ------------CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred ------------CCChhhcc-cccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 23333333 78899999999999988888899988 799999999999876655 4899999999999
Q ss_pred CCCcccccC--CccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435 587 SDNLLQGRI--PRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664 (922)
Q Consensus 587 s~N~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~ 664 (922)
++|++++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+.. .+..+++|+.|++++|.
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCCCc
Confidence 999999876 788999999999999999999999999999999999999999999876544 23678999999999999
Q ss_pred CCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccccccc
Q 002435 665 FTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGE 744 (922)
Q Consensus 665 l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ 744 (922)
+++..|.. +.. .+.|+.|+|++|++++.
T Consensus 437 l~~~~~~~-~~~---------------------------------------------------l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 437 LDISSEQL-FDG---------------------------------------------------LPALQHLNLQGNHFPKG 464 (606)
T ss_dssp CBTTCTTT-TTT---------------------------------------------------CTTCCEEECTTCBCGGG
T ss_pred cCCcCHHH-HhC---------------------------------------------------CCCCCEEECCCCCCCcc
Confidence 98765532 111 35688999999999873
Q ss_pred ---CcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-
Q 002435 745 ---IPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG- 820 (922)
Q Consensus 745 ---ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~- 820 (922)
.+..++.+++|++|+|++|++++.+|..|+++++|+.|+|++|++++.+|..+.+++.| +|++++|++++.+|..
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence 33679999999999999999999999999999999999999999999999999999999 9999999999887753
Q ss_pred CCCCCCCccccCCCcCCCCCC
Q 002435 821 NQFPTFDKTSFNGNLGLCGKP 841 (922)
Q Consensus 821 ~~~~~~~~~s~~gn~~lcg~~ 841 (922)
..+..+....+.|||..|.++
T Consensus 544 ~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 544 PILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHHTSSEEECTTCCEECSGG
T ss_pred ccCCCCCEEeCCCCCccccCC
Confidence 223344556677887766543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-52 Score=501.57 Aligned_cols=518 Identities=22% Similarity=0.212 Sum_probs=302.8
Q ss_pred CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCC
Q 002435 136 SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLS 215 (922)
Q Consensus 136 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 215 (922)
++|++|+|++|.+.+..+..++++++|++|++++|.+..+ .|..+.++++|++|++++|.+++..|..+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-------CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 3445555555555444444455555555555555543211 012233444444444444445565677777778
Q ss_pred CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC----
Q 002435 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE---- 290 (922)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---- 290 (922)
+|++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 88888888887776666677777788888888877765 4577777777777777777777766666565554443
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeccCCC-CcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCC
Q 002435 291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS-GELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHN 369 (922)
Q Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 369 (922)
+|++++|.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+.. .+.
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~------- 248 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLE------- 248 (606)
T ss_dssp EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCS-------
T ss_pred eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccc-------
Confidence 67777777775555544443 6777777777665 345556666666666666544332110 000
Q ss_pred CCcCccchhhhhhcc--CCcceEeC-cCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCC
Q 002435 370 NFSGPIDLDMFLVNF--KHLEHLSL-SSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHG 446 (922)
Q Consensus 370 ~l~~~~~~~~~~~~l--~~L~~L~L-s~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~ 446 (922)
.++...+ ..+ -.++.+++ ..+.+.+..+. +..+++|+.+++++|.+..+| .+..+++|++|++++|.+ +
T Consensus 249 ----~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 249 ----IFEPSIM-EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp ----CCCGGGG-TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-S
T ss_pred ----ccChHHh-hhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-c
Confidence 0000000 111 13444444 34444444443 555566666666666666555 555566666666666666 4
Q ss_pred CCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhh
Q 002435 447 KVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWIC 526 (922)
Q Consensus 447 ~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~ 526 (922)
.+|.. .+++|++|++++|...+. ++ +.
T Consensus 321 ~lp~~----~l~~L~~L~l~~n~~~~~-----------------------------------------------~~--~~ 347 (606)
T 3vq2_A 321 QFPTL----DLPFLKSLTLTMNKGSIS-----------------------------------------------FK--KV 347 (606)
T ss_dssp SCCCC----CCSSCCEEEEESCSSCEE-----------------------------------------------CC--CC
T ss_pred ccccC----CCCccceeeccCCcCccc-----------------------------------------------hh--hc
Confidence 44422 344444444444422110 00 00
Q ss_pred hcCCccceEEccCccCCCC--CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCC-ccccCCC
Q 002435 527 NSSNSLEILDLSYNNLSGL--LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIP-RSLVNCS 603 (922)
Q Consensus 527 ~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~ 603 (922)
. +++|++|++++|.+++. .|..+..++ +|++|++++|.+++ +|..+..+++|++|++++|++++..| ..+..++
T Consensus 348 ~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 A-LPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp C-CTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred c-CCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 1 44555555555555543 244444444 45555555555443 23444444455555555555444444 3444444
Q ss_pred CCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CChhhhhcccccee
Q 002435 604 SLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPSKYFQCWNAMQV 682 (922)
Q Consensus 604 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~~~~l~~ 682 (922)
+|++|++++|++++..|..+.. +++|+.|++++|++++. +|.. +.
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~--------------------------l~~L~~L~l~~n~l~~~~~~~~-~~------- 470 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLG--------------------------LTSLNTLKMAGNSFKDNTLSNV-FA------- 470 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTT--------------------------CTTCCEEECTTCEEGGGEECSC-CT-------
T ss_pred cCCEEECcCCCCCccchhhhcC--------------------------CCCCCEEECCCCcCCCcchHHh-hc-------
Confidence 4444444444444444444444 45555555555554432 1211 10
Q ss_pred cccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCC
Q 002435 683 VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN 762 (922)
Q Consensus 683 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~ 762 (922)
..+.|+.|+|++|++++.+|..|+++++|++|+|++
T Consensus 471 --------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 471 --------------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp --------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred --------------------------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 024577778888888888888899999999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCccccCCCC
Q 002435 763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT-FLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~L~ls~N~lsg~iP~ 819 (922)
|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999 5777788887 599999999999987774
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.3e-53 Score=503.74 Aligned_cols=527 Identities=20% Similarity=0.264 Sum_probs=343.5
Q ss_pred CCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEECCCCCCCCcc
Q 002435 25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLW---DGVECNENTGHVIKLDLSNSCLQGFI 101 (922)
Q Consensus 25 ~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~g~~ 101 (922)
.....|+.||.+|++++..+.. .+ .+...+...+|.. +.+||.| +||+|+.. ++|++|+|+++++.|.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w--~~--~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNW--SQ--QGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGC--CC--CC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCc--cc--CCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcC
Confidence 3455799999999999976532 11 1122234678987 6899999 99999865 89999999999999998
Q ss_pred cCccccccCCCCCeeeCCCCCCC------C-----CCCCccccCCCCCCEEECCCCCCCCcCchhhcC-CCCCCEEEcCC
Q 002435 102 NSSSGLFKLVHLEWLDLAFNYFI------C-----SEIPPEIINLSRLSYLNLSSAGFFGQIPSEILE-LSNLVSLDLSH 169 (922)
Q Consensus 102 ~~~~~l~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~ 169 (922)
++ +++++++|++|+|++|.+. + ..+|... +.+|+ ++++++.+.+.+|..+.. +..+..+++..
T Consensus 98 p~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 98 PD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp CG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred Ch--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 86 9999999999999999751 1 0244444 56677 888888887777766553 22233333332
Q ss_pred CCCCCcccccCCChhHHHhcCCCCCEEEcC--CCcCCCCCchhccCCCCCCEEeccCccCCcc-----------------
Q 002435 170 NSYYNLIELKEPNLGNLVKKLTNLKELALG--GVTISSPIPHSLANLSSLTLLSLSGCELRGR----------------- 230 (922)
Q Consensus 170 n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----------------- 230 (922)
..+.. .....++.+.+. .|.+++ +|..++++++|++|+|++|.+++.
T Consensus 173 ~~~~~-------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 173 KSIKK-------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CCCCC-------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred ccccc-------------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 22100 111222323332 466777 788888889999999999888875
Q ss_pred CccccC--CCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCC-CchhhhhCC------CCCCEEEccCCCCC
Q 002435 231 IPSLLG--NLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSG-ELPASIGNL------ASLEQLELSLNRFR 300 (922)
Q Consensus 231 ~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~ 300 (922)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888888 88999999999998888888888889999999999988 887 788888776 88888888888888
Q ss_pred CCCcc--cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCC-ccEEEccCCCCcCccch
Q 002435 301 GKTPH--SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQ-LKFLEFSHNNFSGPIDL 377 (922)
Q Consensus 301 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 377 (922)
.+|. .++.+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 6777 78888888888888888887788 7888888888888888887 67777888888 888888888877 5554
Q ss_pred hhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCC
Q 002435 378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSM 457 (922)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l 457 (922)
......+++|++|++++|.+.+..+..+.... .....+++|++|++++|+++ .+|..+.. .+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~----------------~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~-~l 456 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD----------------PTPFKGINVSSINLSNNQIS-KFPKELFS-TG 456 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC----------------SSCCCCCCEEEEECCSSCCC-SCCTHHHH-TT
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccc----------------cccccCCCCCEEECcCCccC-cCCHHHHc-cC
Confidence 32212234677777777777665554443000 00003344555555555555 22322210 23
Q ss_pred CCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEc
Q 002435 458 QNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537 (922)
Q Consensus 458 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~L 537 (922)
++|++|++++|.++.+....+.. . +. .+..+++|+.|++
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~---------------------------------------~-~~-~~~~l~~L~~L~L 495 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKD---------------------------------------E-NE-NFKNTYLLTSIDL 495 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEE---------------------------------------T-TE-ECTTGGGCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHHHhcc---------------------------------------c-cc-cccccCCccEEEC
Confidence 44444444444433111100000 0 00 0001335666666
Q ss_pred cCccCCCCCCchhh--hccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcC
Q 002435 538 SYNNLSGLLPQCLD--NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615 (922)
Q Consensus 538 s~N~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 615 (922)
++|+++ .+|..+. .++ +|+.|++++|++++ +|..+..+++|++|+|++|+ ++++|++
T Consensus 496 s~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l 554 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRT 554 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBC
T ss_pred cCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCcc
Confidence 666665 4555544 444 45556666665554 45555555555555554433 3355666
Q ss_pred ccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435 616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 616 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 667 (922)
.+.+|.++..+++|++|+|++|++ +.+|... .++|+.||+++|++.+
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSCTTCE
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCCCCcc
Confidence 667777777777777777777777 4445443 1677777777776653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-50 Score=483.87 Aligned_cols=536 Identities=20% Similarity=0.194 Sum_probs=405.9
Q ss_pred EEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcC
Q 002435 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLS 168 (922)
Q Consensus 89 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 168 (922)
.++.++++++.... .+ .++|++|+|++|.+.+. .+..|.++++|++|++++|.+.+..|..++++++|++|+++
T Consensus 15 ~~~c~~~~l~~ip~---~~--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD---DI--PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSSCCT---TS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcccCCC---CC--CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 45666666665422 23 27899999999998654 45689999999999999999988888889999999999999
Q ss_pred CCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCc
Q 002435 169 HNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLS 247 (922)
Q Consensus 169 ~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls 247 (922)
+|.+..+ .|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|+++
T Consensus 89 ~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 89 GNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 9986432 35678899999999999999998888889999999999999999986 579999999999999999
Q ss_pred CCCCCCCcccccCCCCCCc----EEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEeeccC
Q 002435 248 FNNLLGELPTSIGNLDCLK----RLDISWNELSGELPASIGNLASLEQLELSLNRFR-GKTPHSMGNFTRLYWLSLASND 322 (922)
Q Consensus 248 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 322 (922)
+|.+++..+..++.+++|+ +|++++|.+++..+..+. ..+|++|++++|.+. +..|..+.+++.|+.+++..+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCcceecChhhhhhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 9999988888887776655 899999999965555444 449999999999987 4567788999999999988765
Q ss_pred CCCcc------cccccCCC--CCceEec-CCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCc
Q 002435 323 FSGEL------PASFGNLR--SLEGLDI-SECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLS 393 (922)
Q Consensus 323 l~~~~------p~~l~~l~--~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls 393 (922)
+.+.. +..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .++ . +..+++|++|+++
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~-l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--D-VPKHFKWQSLSII 315 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--C-CCTTCCCSEEEEE
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--h-ccccccCCEEEcc
Confidence 54311 11111111 3444555 44555555554 566666666666666654 233 1 2455566666666
Q ss_pred CccccccccccccCCCCccEEEecCCCCC-CCcccccCCCCccEEECcCCCCCCCC--CccccccCCCCccEEEccCCcc
Q 002435 394 SNRLSLFTKAIFNTSQKFNFVGLRSCNLN-EFPNFLKNQHYLEVLDLSCNKIHGKV--PKWLIEPSMQNFSYLNLSHNFL 470 (922)
Q Consensus 394 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~-~lp~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~l~~L~~L~L~~n~l 470 (922)
+|.+..++ .+ .+++|+.|++++|... .+ .+..+++|++|++++|++++.. |..+. .+++|++|++++|.+
T Consensus 316 ~n~l~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 316 RCQLKQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGA 388 (606)
T ss_dssp SCCCSSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH--CCSCCCEEECCSCSE
T ss_pred cccCcccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc--cCCcccEeECCCCcc
Confidence 66664444 22 5555666666655333 22 3345555666666666555432 33333 455555555555555
Q ss_pred ccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchh
Q 002435 471 IGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL 550 (922)
Q Consensus 471 ~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l 550 (922)
++... .....++++.|++++|.+.+..|...+..+++|++|++++|.+++..|..+
T Consensus 389 ~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 389 IIMSA------------------------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EEECC------------------------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccchh------------------------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 44320 012356788888999988887774444448999999999999999999999
Q ss_pred hhccCcccEEEcCCCcccC-CCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCC
Q 002435 551 DNFSDHLSILDLQHNKFCG-SIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629 (922)
Q Consensus 551 ~~l~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 629 (922)
..++ +|++|++++|++++ .+|..+..+++|++|++++|++++..|..+.++++|++|+|++|++++..|..+..+++|
T Consensus 445 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 445 LGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 9988 79999999999998 478899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEcCCCcccccCCCCCCCCCCC-CccEEEccCCcCCCCCChhhhhccc
Q 002435 630 NVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWN 678 (922)
Q Consensus 630 ~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~ 678 (922)
++|++++|+++.. |..+ ..++ +|+.|++++|++.|.++..|+..|-
T Consensus 524 ~~L~l~~N~l~~~-p~~~--~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 524 STLDCSFNRIETS-KGIL--QHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CEEECTTSCCCCE-ESCG--GGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred CEEECCCCcCccc-CHhH--hhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 9999999999954 4443 5666 5999999999999999988876653
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-51 Score=493.13 Aligned_cols=496 Identities=21% Similarity=0.259 Sum_probs=305.1
Q ss_pred CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcE
Q 002435 24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEE--ANIDC--CLW------------DGVECNENTGHV 87 (922)
Q Consensus 24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v 87 (922)
..+..+|+.||++||+++.++ +|+... ...++ |.| .||+|+. .++|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V 325 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRV 325 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCE
T ss_pred cccchHHHHHHHHHHHHcCCC-----------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCE
Confidence 456778999999999999653 343310 01244 889 9999986 5899
Q ss_pred EEEECCCCCCCCcccCccccccCCCCCeeeC-CCCCCCCCCCCccc----------------------------------
Q 002435 88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDL-AFNYFICSEIPPEI---------------------------------- 132 (922)
Q Consensus 88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l---------------------------------- 132 (922)
+.|+|+++++.|.+++ .++++++|++|+| ++|.+.+. .|-..
T Consensus 326 ~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp EEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred EEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 9999999999999986 9999999999999 88876544 12110
Q ss_pred -----------------cCCCCCCEEECCC--CCCCCcCchhhcCCCCCCEEEcCCCCCCCc-ccccCCChhHHHhcCCC
Q 002435 133 -----------------INLSRLSYLNLSS--AGFFGQIPSEILELSNLVSLDLSHNSYYNL-IELKEPNLGNLVKKLTN 192 (922)
Q Consensus 133 -----------------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~~~~~l~~ 192 (922)
.....++.+.+.. |.+.+ +|..++++++|++|+|++|+++.. +.. ..+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~--~~~~-------- 471 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV--DWED-------- 471 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS--SCSC--------
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc--cccc--------
Confidence 0111122222221 34433 455555555555555555543220 000 0000
Q ss_pred CCEEEcCCCcCCCCCchhcc--CCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCC-CCC-CcccccCCC------
Q 002435 193 LKELALGGVTISSPIPHSLA--NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNN-LLG-ELPTSIGNL------ 262 (922)
Q Consensus 193 L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------ 262 (922)
.+.+...+.+|..++ ++++|++|+|++|.+.+.+|..++++++|++|+|++|+ +++ .+|..++++
T Consensus 472 -----~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~ 546 (876)
T 4ecn_A 472 -----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546 (876)
T ss_dssp -----TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred -----cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc
Confidence 000001113666666 77777777777777777777777777777777777776 666 566544443
Q ss_pred -CCCcEEEcccCCCCCCchh--hhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCC-Cc
Q 002435 263 -DCLKRLDISWNELSGELPA--SIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS-LE 338 (922)
Q Consensus 263 -~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~ 338 (922)
++|++|++++|.++ .+|. .+.++++|++|+|++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 37777777777777 6666 6777777777777777777 555 6777777777777777776 66766777777 77
Q ss_pred eEecCCCccCccCchhhcCCCC--ccEEEccCCCCcCccchh---hhhhccCCcceEeCcCccccccccccccCCCCccE
Q 002435 339 GLDISECKFSSQIPSSLRNLAQ--LKFLEFSHNNFSGPIDLD---MFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNF 413 (922)
Q Consensus 339 ~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 413 (922)
+|++++|.++ .+|..+..++. |+.|++++|.+.+.++.. .....+++|+.|++++|.++.++...+..+++|+.
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 7777777777 56666655543 777777777776654321 10013457788888888887777666667778888
Q ss_pred EEecCCCCCCCcccccC--------CCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCC
Q 002435 414 VGLRSCNLNEFPNFLKN--------QHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYD 485 (922)
Q Consensus 414 L~L~~~~l~~lp~~l~~--------~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 485 (922)
|++++|.++.+|..+.. +++|++|+|++|+++ .+|..+....
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~----------------------------- 751 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT----------------------------- 751 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT-----------------------------
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc-----------------------------
Confidence 88888888877765433 238999999999887 5554432112
Q ss_pred CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCC-
Q 002435 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQH- 564 (922)
Q Consensus 486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~- 564 (922)
+++|+.|+|++|++++ +|..+..++ +|+.|+|++
T Consensus 752 -------------------------------------------l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N 786 (876)
T 4ecn_A 752 -------------------------------------------LPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQ 786 (876)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCC
T ss_pred -------------------------------------------CCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCC
Confidence 3445555555555554 455555554 455555554
Q ss_pred -----CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcc
Q 002435 565 -----NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639 (922)
Q Consensus 565 -----N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 639 (922)
|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.|.+|+.
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 555555555555555555555555555 34444443 4555555555555544444443333334444444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-50 Score=494.43 Aligned_cols=531 Identities=23% Similarity=0.205 Sum_probs=350.1
Q ss_pred EEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcC-chhhcCCCCCCEEEc
Q 002435 89 KLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQI-PSEILELSNLVSLDL 167 (922)
Q Consensus 89 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L 167 (922)
..+.++++++... . -.++|++|||++|.+.+. .|..|.++++|++|+|++|...+.+ |..++++++|++|+|
T Consensus 8 ~~dcs~~~L~~vP----~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLTQVP----Q--VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSSCCC----S--SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCCCC----C--CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 3455566666642 2 346788888888887654 5677888888888888888666666 567778888888888
Q ss_pred CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh--ccCCCCCCEEeccCccCCccCc-cccCCCCCCCEE
Q 002435 168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS--LANLSSLTLLSLSGCELRGRIP-SLLGNLTKLMYL 244 (922)
Q Consensus 168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 244 (922)
++|.+..+ .|..+.++++|++|++++|.+++.+|.. ++++++|++|++++|.+.+..+ ..++++++|++|
T Consensus 81 s~N~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 81 GSSKIYFL-------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TTCCCCEE-------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCcCccc-------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 88875322 2345666677777777777766655444 6666777777777776665543 456667777777
Q ss_pred eCcCCCCCCCcccccCCC--CCCcEEEcccCCCCCCchhhhhCCCC------CCEEEccCCCCCCCCcccccCC---CCC
Q 002435 245 DLSFNNLLGELPTSIGNL--DCLKRLDISWNELSGELPASIGNLAS------LEQLELSLNRFRGKTPHSMGNF---TRL 313 (922)
Q Consensus 245 ~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L 313 (922)
++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+.+..+..+... +++
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 777776666666666655 66666777766666655555554444 6666666666665555544322 445
Q ss_pred cEEEeeccC---------CCCcccccccCC--CCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhh
Q 002435 314 YWLSLASND---------FSGELPASFGNL--RSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLV 382 (922)
Q Consensus 314 ~~L~L~~n~---------l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 382 (922)
+.+.+..+. +.+..+..+..+ ++|++|++++|.+.+..+..+..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~------------------------- 288 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET------------------------- 288 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-------------------------
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-------------------------
Confidence 555554222 111112222222 34444444444444444444444
Q ss_pred ccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCC-cccccCCCCccEEECcCCCCCCCCCccccccCCCCcc
Q 002435 383 NFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEF-PNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFS 461 (922)
Q Consensus 383 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~ 461 (922)
+++|+.|++++|.++++.+..|..+++|++|++++|.++.+ |..+..+++|++|++++|++.+..+..+. .+++|+
T Consensus 289 -l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~ 365 (844)
T 3j0a_A 289 -LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK--FLEKLQ 365 (844)
T ss_dssp -CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC--SCCCCC
T ss_pred -CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc--CCCCCC
Confidence 45555555555555554444455555555555555555433 34455555555555555555544444443 455555
Q ss_pred EEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCcc
Q 002435 462 YLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNN 541 (922)
Q Consensus 462 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~ 541 (922)
+|++++|.++++.. ...+..+++++|.++ .+|....+++.+++++|.+++.-.......+++|+.|++++|+
T Consensus 366 ~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 366 TLDLRDNALTTIHF-------IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEEEETCCSCCCSS-------CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCCCCcccC-------CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 55555555554322 234456666666665 3344456788888888888864333333348999999999999
Q ss_pred CCCCCCc-hhhhccCcccEEEcCCCccc-----CCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcC
Q 002435 542 LSGLLPQ-CLDNFSDHLSILDLQHNKFC-----GSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQI 615 (922)
Q Consensus 542 l~~~~p~-~l~~l~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 615 (922)
+++..+. .+..++ +|+.|++++|.++ +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++
T Consensus 438 l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 438 FSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ccccccccccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 9976544 233444 7999999999997 44556788999999999999999999999999999999999999999
Q ss_pred ccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcc
Q 002435 616 SGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCW 677 (922)
Q Consensus 616 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~ 677 (922)
++..|..+. ++|++|+|++|++++.+|..+ ++|+.|++++|++.|.++..+|..|
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-----~~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-----SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhHh-----CCcCEEEecCCCcccccccHHHHHH
Confidence 988887776 899999999999999887653 5899999999999999987766554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=454.43 Aligned_cols=496 Identities=21% Similarity=0.222 Sum_probs=271.6
Q ss_pred CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS 216 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 216 (922)
++++|++++|.+.+..+..+.++++|++|++++|++..+. +..+.++++|++|++++|.+++..+..++++++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-------cccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 4555555555555444445555555555555555432211 122334444444444444455545566677777
Q ss_pred CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC-CcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCC----CE
Q 002435 217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG-ELPTSIGNLDCLKRLDISWNELSGELPASIGNLASL----EQ 291 (922)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~ 291 (922)
|++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..+++| ++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 7777777777765544456677777777777777665 356667777777777777777665555566666665 66
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435 292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370 (922)
Q Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 370 (922)
|++++|.+.+..+..+... +|+.|++++|.... .++..+..++.++.+.+....+.. ...++
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~-------- 244 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE-------- 244 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE--------
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh--------
Confidence 6666666666555555444 56666666654321 233344444444444333221110 00111
Q ss_pred CcCccchhhhhhccC--CcceEeCcCc-cccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCC
Q 002435 371 FSGPIDLDMFLVNFK--HLEHLSLSSN-RLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK 447 (922)
Q Consensus 371 l~~~~~~~~~~~~l~--~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~ 447 (922)
.++...+ ..++ .++.++++++ .+.+. +|..+..+++|++|++++|.+. .
T Consensus 245 ---~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~-----------------------~~~~~~~l~~L~~L~l~~~~l~-~ 296 (570)
T 2z63_A 245 ---KFDKSAL-EGLCNLTIEEFRLAYLDYYLDD-----------------------IIDLFNCLTNVSSFSLVSVTIE-R 296 (570)
T ss_dssp ---ECCTTTT-GGGGGSEEEEEEEEETTEEESC-----------------------STTTTGGGTTCSEEEEESCEEC-S
T ss_pred ---hcchhhh-ccccccchhhhhhhcchhhhhh-----------------------chhhhcCcCcccEEEecCccch-h
Confidence 0111111 1111 2334444444 33333 3344444555555555555554 2
Q ss_pred CCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhh
Q 002435 448 VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN 527 (922)
Q Consensus 448 ~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~ 527 (922)
+|.++. .+ +|++|++++|.+.. +|..
T Consensus 297 l~~~~~--~~-~L~~L~l~~n~~~~------------------------------------------------l~~~--- 322 (570)
T 2z63_A 297 VKDFSY--NF-GWQHLELVNCKFGQ------------------------------------------------FPTL--- 322 (570)
T ss_dssp CCBCCS--CC-CCSEEEEESCBCSS------------------------------------------------CCBC---
T ss_pred hhhhhc--cC-CccEEeeccCcccc------------------------------------------------cCcc---
Confidence 333332 22 33333333332211 1110
Q ss_pred cCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCC--cccccCCCCccEEecCCCcccccCCccccCCCCC
Q 002435 528 SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSI--PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605 (922)
Q Consensus 528 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 605 (922)
.+++|+.|++++|.+.+..+. ..++ +|++|++++|++++.. |..+..+++|++|++++|++++..+. +..+++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL 398 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred cccccCEEeCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence 033444444444444433322 2222 3444444444443322 33344444444444444444433222 4444444
Q ss_pred cEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435 606 KFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684 (922)
Q Consensus 606 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~ 684 (922)
++|++++|++.+..| ..+. .+++|+.|++++|++.+..|.. +..
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~-~~~-------- 443 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFL--------------------------SLRNLIYLDISHTHTRVAFNGI-FNG-------- 443 (570)
T ss_dssp CEEECTTSEEESCTTSCTTT--------------------------TCTTCCEEECTTSCCEECCTTT-TTT--------
T ss_pred CEEEccCCccccccchhhhh--------------------------cCCCCCEEeCcCCcccccchhh-hhc--------
Confidence 444444444443332 2233 4455555555555554333321 110
Q ss_pred cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccccc-ccCcccccccCCCCEEeCCCc
Q 002435 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFD-GEIPTSIANLKGLQVLSLANN 763 (922)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N 763 (922)
.+.|+.|+|++|.++ +.+|..++.+++|++|+|++|
T Consensus 444 -------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 444 -------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp -------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred -------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 234667777777776 578888999999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 002435 764 SLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG 820 (922)
Q Consensus 764 ~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~ 820 (922)
++++.+|..|+++++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|..
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999999999999999999999999999999999999999864
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.4e-47 Score=444.90 Aligned_cols=490 Identities=20% Similarity=0.196 Sum_probs=312.9
Q ss_pred EcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC
Q 002435 197 ALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS 276 (922)
Q Consensus 197 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 276 (922)
+.+++.++. +|..+. ++|++|++++|++++..|..+.++++|++|++++|++++..|.+|+++++|++|++++|.++
T Consensus 11 ~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 344444443 343332 56777777777777666777777777777777777777766677777777777777777777
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEeeccCCCCccc-ccccCCCCCceEecCCCccCccCchh
Q 002435 277 GELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASNDFSGELP-ASFGNLRSLEGLDISECKFSSQIPSS 354 (922)
Q Consensus 277 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~ 354 (922)
+..|..++++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 6666667777777777777777775 345667777788888888777444444 46777778888888888887777777
Q ss_pred hcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCc
Q 002435 355 LRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYL 434 (922)
Q Consensus 355 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L 434 (922)
+..+++|++|+++.|.+. .++.. +...+++|++|++++|++++...... .....+++|
T Consensus 168 l~~l~~L~~L~l~~n~~~-~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------~~~~~~~~L 225 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESA-FLLEI-FADILSSVRYLELRDTNLARFQFSPL--------------------PVDEVSSPM 225 (549)
T ss_dssp TTTCSEEEEEEEECSBST-THHHH-HHHSTTTBSEEEEESCBCTTCCCCCC--------------------SSCCCCCCC
T ss_pred hhccccCceEecccCccc-ccchh-hHhhcccccEEEccCCcccccccccc--------------------chhhhhhcc
Confidence 777788888888777764 33322 22557777777777777766421110 011223444
Q ss_pred cEEECcCCCCCCCCCccccc--cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeec
Q 002435 435 EVLDLSCNKIHGKVPKWLIE--PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLV 512 (922)
Q Consensus 435 ~~L~Ls~n~l~~~~p~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~l 512 (922)
+.|++++|.+++..+..+.. ..+++|+.+++++|.+.+........ ......
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------------~~~~~~--------- 279 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE-----------------SDVVSE--------- 279 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT-----------------TTCCCC---------
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc-----------------hhhhhh---------
Confidence 55555555444332222110 13345555555555444321110000 000011
Q ss_pred cCCcccCcCChhhhhcCCccceEEccCccCCCC-----CCchhhhccCcccEEEcCCCcccCCCcccc-cCCCCccEEec
Q 002435 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-----LPQCLDNFSDHLSILDLQHNKFCGSIPQTF-LSGRSLMMIDL 586 (922)
Q Consensus 513 s~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~-----~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L 586 (922)
+++|+.|+++++.+... ++..+.... +|+.|++++|+++ .+|..+ ..+++|++|++
T Consensus 280 ----------------l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 280 ----------------LGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp ----------------CTTCCEEEEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred ----------------hcccccccccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence 23344444444433211 111122222 5666666666665 344433 45666777777
Q ss_pred CCCcccccCC---ccccCCCCCcEEECCCCcCccCcc--hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEcc
Q 002435 587 SDNLLQGRIP---RSLVNCSSLKFLDLGNNQISGTFP--SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLS 661 (922)
Q Consensus 587 s~N~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs 661 (922)
++|++++.+| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|... ..+++|+.|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECC
Confidence 7777666543 235667777777777777765432 456777777777777777774 34333 456778888888
Q ss_pred CCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccc
Q 002435 662 NNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRF 741 (922)
Q Consensus 662 ~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l 741 (922)
+|+++ .+|.. +++.|+.|||++|++
T Consensus 419 ~N~l~-~l~~~------------------------------------------------------~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 419 STGIR-VVKTC------------------------------------------------------IPQTLEVLDVSNNNL 443 (549)
T ss_dssp TSCCS-CCCTT------------------------------------------------------SCTTCSEEECCSSCC
T ss_pred CCCcc-cccch------------------------------------------------------hcCCceEEECCCCCh
Confidence 88776 22311 124578889999998
Q ss_pred cccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435 742 DGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 742 ~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~ 819 (922)
++.+ +.+++|++|||++|+++ .+|. .+.+++|++|||++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8753 57889999999999998 5676 57899999999999999999999999999999999999999998884
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-46 Score=443.13 Aligned_cols=200 Identities=21% Similarity=0.240 Sum_probs=157.3
Q ss_pred CCccceEEccCccCCCCCCchh-hhccCcccEEEcCCCcccCCCc---ccccCCCCccEEecCCCcccccCC--ccccCC
Q 002435 529 SNSLEILDLSYNNLSGLLPQCL-DNFSDHLSILDLQHNKFCGSIP---QTFLSGRSLMMIDLSDNLLQGRIP--RSLVNC 602 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l 602 (922)
.++|+.|++++|.++ .+|..+ ..++ +|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred cccceEEEeccCccc-cCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 456777777777776 556555 3455 68888888888876654 336778888888888888876543 457888
Q ss_pred CCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccccee
Q 002435 603 SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQV 682 (922)
Q Consensus 603 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~ 682 (922)
++|++|++++|+++ .+|..+..+++|++|++++|++++.. .. -.++|+.||+++|++++.++
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~----~~~~L~~L~Ls~N~l~~~~~------------ 448 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TC----IPQTLEVLDVSNNNLDSFSL------------ 448 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TT----SCTTCSEEECCSSCCSCCCC------------
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-ch----hcCCceEEECCCCChhhhcc------------
Confidence 88888888888888 56778888888999999998887542 21 13689999999998875321
Q ss_pred cccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCC
Q 002435 683 VNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLAN 762 (922)
Q Consensus 683 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~ 762 (922)
..+.|+.|||++|+|+ .+|. .+.+++|++|||++
T Consensus 449 --------------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 449 --------------------------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISR 482 (549)
T ss_dssp --------------------------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred --------------------------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCC
Confidence 0245889999999998 6776 57799999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCcccCc
Q 002435 763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIP 794 (922)
Q Consensus 763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip 794 (922)
|++++.+|..++++++|+.|+|++|.+++..|
T Consensus 483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999999999999999999999877
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=437.70 Aligned_cols=514 Identities=22% Similarity=0.215 Sum_probs=355.3
Q ss_pred CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccC
Q 002435 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN 273 (922)
Q Consensus 194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 273 (922)
+.++.++..++. +|..+. +++++|++++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 345555544443 343332 46777777777777666666777777777777777776666666777777777777777
Q ss_pred CCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCC-cccccccCCCCCceEecCCCccCccCc
Q 002435 274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSG-ELPASFGNLRSLEGLDISECKFSSQIP 352 (922)
Q Consensus 274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 352 (922)
.+++..|..|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 7765555667777777777777777665555456666666666666666654 345666666666666666666665555
Q ss_pred hhhcCCCCc----cEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCC--CCcc
Q 002435 353 SSLRNLAQL----KFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLN--EFPN 426 (922)
Q Consensus 353 ~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~--~lp~ 426 (922)
..++.+++| +.+++++|.+. ++.+..|... +|+.+++++|... .++.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~--------------------------~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMN--------------------------FIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCC--------------------------EECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred HHccchhccchhhhhcccCCCCce--------------------------ecCHHHhccC-cceeEecccccccccchhh
Confidence 555544444 45555555544 4433333222 3444444443222 2333
Q ss_pred cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506 (922)
Q Consensus 427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~ 506 (922)
.+..++.++.+.+....+.. ...++ .+....+.+.. ...
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~----------~~~l~--~~~~~~~~~l~-----------------------------~l~ 258 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRN----------EGNLE--KFDKSALEGLC-----------------------------NLT 258 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCC----------CSSCE--ECCTTTTGGGG-----------------------------GSE
T ss_pred hhcCccccceeeeccccccC----------chhhh--hcchhhhcccc-----------------------------ccc
Confidence 44444444444433222110 00000 00000000000 012
Q ss_pred CceeeccCC-cccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEe
Q 002435 507 TKHYLVSNN-SLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMID 585 (922)
Q Consensus 507 l~~L~ls~n-~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 585 (922)
++.+.++++ .+.+.+|..+.. +++|+.|++++|.++ .+|..+..+ +|++|++++|.++ .+|. ..+++|+.|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEe
Confidence 344555555 556666666665 889999999999998 577777776 6999999999998 5554 4788999999
Q ss_pred cCCCcccccCCccccCCCCCcEEECCCCcCccCc--chhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCC
Q 002435 586 LSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTF--PSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663 (922)
Q Consensus 586 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N 663 (922)
+++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++.+..+. +..+++|+.|++++|
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTS
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCC
Confidence 999999877665 78899999999999998765 78899999999999999999887554 367899999999999
Q ss_pred cCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccc
Q 002435 664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743 (922)
Q Consensus 664 ~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 743 (922)
.+.+..|...+.. .+.|+.|++++|.+++
T Consensus 407 ~l~~~~~~~~~~~---------------------------------------------------l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 407 NLKQMSEFSVFLS---------------------------------------------------LRNLIYLDISHTHTRV 435 (570)
T ss_dssp EEESCTTSCTTTT---------------------------------------------------CTTCCEEECTTSCCEE
T ss_pred ccccccchhhhhc---------------------------------------------------CCCCCEEeCcCCcccc
Confidence 9886555332211 3568899999999999
Q ss_pred cCcccccccCCCCEEeCCCcccc-ccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-C
Q 002435 744 EIPTSIANLKGLQVLSLANNSLH-GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-N 821 (922)
Q Consensus 744 ~ip~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~ 821 (922)
.+|..+..+++|++|+|++|.++ +.+|..++.+++|++|+|++|++++.+|..+.++++|++|++++|++++.+|.. .
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 99999999999999999999998 689999999999999999999999999999999999999999999999987753 2
Q ss_pred CCCCCCccccCCCcCCCCCC
Q 002435 822 QFPTFDKTSFNGNLGLCGKP 841 (922)
Q Consensus 822 ~~~~~~~~s~~gn~~lcg~~ 841 (922)
.+..+....+.+|+.-|.+|
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cccCCcEEEecCCcccCCCc
Confidence 34455556677777766544
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-46 Score=448.97 Aligned_cols=267 Identities=16% Similarity=0.186 Sum_probs=133.6
Q ss_pred CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcC------CC------CCchhccCCCCCCEEeccCccC
Q 002435 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTI------SS------PIPHSLANLSSLTLLSLSGCEL 227 (922)
Q Consensus 160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~------~~------~~~~~l~~l~~L~~L~Ls~n~l 227 (922)
.+++.|+|+++.+. +.+|..++++++|++|+|++|.+ .+ .+|... +..|+ ++++++.+
T Consensus 81 ~~V~~L~L~~~~l~-------g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l 150 (636)
T 4eco_A 81 GRVTGLSLEGFGAS-------GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFV 150 (636)
T ss_dssp CCEEEEECTTSCCE-------EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHT
T ss_pred CCEEEEEecCcccC-------CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhh
Confidence 46778888887632 44556677777777777777754 11 223322 34455 56666666
Q ss_pred CccCccccCC-CCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcc--cCCCCCCchhhhhCCCCCCEEEccCCCCCCC--
Q 002435 228 RGRIPSLLGN-LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDIS--WNELSGELPASIGNLASLEQLELSLNRFRGK-- 302 (922)
Q Consensus 228 ~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-- 302 (922)
.+.+|..+.. +..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|+|++|.+++.
T Consensus 151 ~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~ 223 (636)
T 4eco_A 151 DYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223 (636)
T ss_dssp CCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB
T ss_pred ccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccc
Confidence 6555554441 1112222222111110 001111111121 345554 555566666666666666665553
Q ss_pred ---------------Cccccc--CCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCc-cCc-cCchhhcCC-----
Q 002435 303 ---------------TPHSMG--NFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECK-FSS-QIPSSLRNL----- 358 (922)
Q Consensus 303 ---------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l----- 358 (922)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 555555 56666666666666555556556666666666666665 555 555555444
Q ss_pred -CCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCC-ccE
Q 002435 359 -AQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHY-LEV 436 (922)
Q Consensus 359 -~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~-L~~ 436 (922)
++|++|++++|.++ .+|....+..+++|++|++++|.+++..+ .+..+++|+.|++++|.++.+|..+..+++ |++
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence 55555555555555 34431112445555555555555542222 333344444444444444444444444554 555
Q ss_pred EECcCCCCC
Q 002435 437 LDLSCNKIH 445 (922)
Q Consensus 437 L~Ls~n~l~ 445 (922)
|++++|+++
T Consensus 382 L~Ls~N~l~ 390 (636)
T 4eco_A 382 LSFAHNKLK 390 (636)
T ss_dssp EECCSSCCS
T ss_pred EEccCCcCc
Confidence 555555554
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-44 Score=432.43 Aligned_cols=390 Identities=20% Similarity=0.242 Sum_probs=210.6
Q ss_pred CCCCCCchhhhhCCCCCCEEEccCCCCCC-----------------CCccccc--CCCCCcEEEeeccCCCCcccccccC
Q 002435 273 NELSGELPASIGNLASLEQLELSLNRFRG-----------------KTPHSMG--NFTRLYWLSLASNDFSGELPASFGN 333 (922)
Q Consensus 273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~ 333 (922)
|.+++ +|..++++++|++|+|++|.+++ .+|..++ ++++|+.|+|++|.+.+.+|..+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44554 56666666666666666666665 2555544 5666666666666655555655666
Q ss_pred CCCCceEecCCCc-cCc-cCchhhcCCC-------CccEEEccCCCCcCccchhhhhhccCCcceEeCcCcccccccccc
Q 002435 334 LRSLEGLDISECK-FSS-QIPSSLRNLA-------QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAI 404 (922)
Q Consensus 334 l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 404 (922)
+++|++|++++|+ +++ .+|..++.++ +|+.|++++|.++ .+|....+..+++|++|++++|.++.++ .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE--A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC--C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch--h
Confidence 6666666666665 555 4555444333 5555555555555 4443111145555555555555555333 4
Q ss_pred ccCCCCccEEEecCCCCCCCcccccCCCC-ccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCC
Q 002435 405 FNTSQKFNFVGLRSCNLNEFPNFLKNQHY-LEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRN 483 (922)
Q Consensus 405 ~~~~~~L~~L~L~~~~l~~lp~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 483 (922)
+..+++|+.|++++|.++.+|..+..+++ |++|++++|+++ .+|..+.....++|+.|++++|.+.+..+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~------- 662 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN------- 662 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------
Confidence 44455555555555555555544444444 555555555544 344333211112233333333333221110
Q ss_pred CCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhh-cCCccceEEccCccCCCCCCchhhhccCcccEEEc
Q 002435 484 YDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICN-SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDL 562 (922)
Q Consensus 484 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~L 562 (922)
. +..+.. .+++|+.|++++|.++ .+|..+
T Consensus 663 -------------------l------------------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~------------ 692 (876)
T 4ecn_A 663 -------------------I------------------SCSMDDYKGINASTVTLSYNEIQ-KFPTEL------------ 692 (876)
T ss_dssp -------------------C------------------SSCTTTCCCCCEEEEECCSSCCC-SCCHHH------------
T ss_pred -------------------c------------------hhhhccccCCCcCEEEccCCcCC-ccCHHH------------
Confidence 0 000000 0224444444444444 233322
Q ss_pred CCCcccCCCcccccCCCCccEEecCCCcccccCCcc-cc-------CCCCCcEEECCCCcCccCcchhhc--CCCCCCEE
Q 002435 563 QHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRS-LV-------NCSSLKFLDLGNNQISGTFPSWLG--TLRELNVL 632 (922)
Q Consensus 563 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L 632 (922)
+..+++|+.|+|++|+++ .+|.. +. ++++|+.|+|++|+++ .+|..+. .+++|+.|
T Consensus 693 ------------~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 693 ------------FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ------------HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred ------------HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 223444444444444444 22221 11 2236666666666666 4555554 56666666
Q ss_pred EcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeee
Q 002435 633 ILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYS 712 (922)
Q Consensus 633 ~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 712 (922)
+|++|++++ +|... ..+++|+.|+|++|+
T Consensus 759 ~Ls~N~L~~-lp~~l--~~L~~L~~L~Ls~N~------------------------------------------------ 787 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQP--LNSSQLKAFGIRHQR------------------------------------------------ 787 (876)
T ss_dssp ECCSSCCSS-CCCGG--GGCTTCCEEECCCCB------------------------------------------------
T ss_pred EeCCCCCCc-cchhh--hcCCCCCEEECCCCC------------------------------------------------
Confidence 666666655 33332 345666666666654
Q ss_pred eeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCccc
Q 002435 713 LTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQ 792 (922)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ 792 (922)
++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...
T Consensus 788 ----------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 788 ----------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp ----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ----------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 1345677778888888889999999999999 77888766 5899999999988877
Q ss_pred CcccccCCCCCCeEeccCCccc
Q 002435 793 IPQQLVDLTFLEFFNVSNNNLT 814 (922)
Q Consensus 793 ip~~l~~L~~L~~L~ls~N~ls 814 (922)
.+..+.....+..+.+++|++.
T Consensus 843 ~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 843 DVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp ECGGGHHHHHTTCCEEECCTTS
T ss_pred ChHHccccccchheeecCCCcc
Confidence 7777766666677777777543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-43 Score=422.23 Aligned_cols=518 Identities=21% Similarity=0.220 Sum_probs=272.0
Q ss_pred CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCC
Q 002435 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLT 239 (922)
Q Consensus 160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 239 (922)
+++++|||++|+|+.+.. ..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~-------~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCH-------HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 468888888887643321 3455566666666666666655555566666666666666666554445556666
Q ss_pred CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEe
Q 002435 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSL 318 (922)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (922)
+|++|+|++|++++..+..|+++++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+.+++.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~--- 201 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--- 201 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh---
Confidence 66666666666655544555666666666666665543 23455555555666666655555554444443332220
Q ss_pred eccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccc-
Q 002435 319 ASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRL- 397 (922)
Q Consensus 319 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l- 397 (922)
....++++.|.+....+.. .....++.+++.+|.....+....+ ..+..++...+..+..
T Consensus 202 -----------------~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~-~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 202 -----------------LNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCI-QGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp -----------------CCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHH-HTTTTCEEEEEEEECCT
T ss_pred -----------------hhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhh-cCCcccccccccccccc
Confidence 1123444444444322222 2222344444444433322222221 3333333333322211
Q ss_pred -----cccccccccCCCCccEEEecCCCCC----CCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCC
Q 002435 398 -----SLFTKAIFNTSQKFNFVGLRSCNLN----EFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHN 468 (922)
Q Consensus 398 -----~~~~~~~~~~~~~L~~L~L~~~~l~----~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n 468 (922)
.......+.....+....+..+... .++..+.....++.+++.++.+....+. . ....++.|++.+|
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~--~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF--S--YNFGWQHLELVNC 338 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG--G--SCCCCSEEEEESC
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc--c--cchhhhhhhcccc
Confidence 1111111222222222222222111 1111222233344444444333221110 0 1222333333322
Q ss_pred ccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCc
Q 002435 469 FLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQ 548 (922)
Q Consensus 469 ~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~ 548 (922)
.+.+..+.. +..|+.++++.|.+....+
T Consensus 339 --------------------------~~~~~~~~~-------------------------l~~L~~l~l~~n~~~~~~~- 366 (635)
T 4g8a_A 339 --------------------------KFGQFPTLK-------------------------LKSLKRLTFTSNKGGNAFS- 366 (635)
T ss_dssp --------------------------EESSCCCCB-------------------------CTTCCEEEEESCCSCCBCC-
T ss_pred --------------------------cccCcCccc-------------------------chhhhhcccccccCCCCcc-
Confidence 222222222 2334444444444432211
Q ss_pred hhhhccCcccEEEcCCCccc--CCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc-hhhcC
Q 002435 549 CLDNFSDHLSILDLQHNKFC--GSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGT 625 (922)
Q Consensus 549 ~l~~l~~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~ 625 (922)
...++ +|+.|++++|.+. +..+..+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..|..
T Consensus 367 -~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 367 -EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -CCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -ccccc-ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 12233 4555555555543 2233444455556666666665553 23345556666666666655544333 34556
Q ss_pred CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccc
Q 002435 626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAA 705 (922)
Q Consensus 626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 705 (922)
+++++.++++.|++.+..+... ..++.|+.|++++|.+...++...|.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~------------------------------ 491 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT------------------------------ 491 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT------------------------------
T ss_pred cccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh------------------------------
Confidence 6666666666666665554433 44566666666666543221111111
Q ss_pred cceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCC
Q 002435 706 LGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLS 785 (922)
Q Consensus 706 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls 785 (922)
..+.|+.|||++|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||+
T Consensus 492 ---------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 492 ---------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp ---------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred ---------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 13457788888888888888889999999999999999998888889999999999999
Q ss_pred CCcCcccCcccccCC-CCCCeEeccCCccccCCC
Q 002435 786 NNKFSGQIPQQLVDL-TFLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 786 ~N~l~g~ip~~l~~L-~~L~~L~ls~N~lsg~iP 818 (922)
+|+|++.+|..+..+ ++|++|++++|++++...
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999988888 689999999998887554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=421.64 Aligned_cols=459 Identities=18% Similarity=0.176 Sum_probs=288.5
Q ss_pred CEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccC
Q 002435 194 KELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWN 273 (922)
Q Consensus 194 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 273 (922)
++|++++|.++. +|..+. ++|++|++++|.+.+..|..+.++++|++|++++|++++..|+.|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888888874 666555 78888888888888777778888888888888888888777888888888888888888
Q ss_pred CCCCCchhhhhCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEeeccCCCCcccccccCCCCC--ceEecCCCcc--C
Q 002435 274 ELSGELPASIGNLASLEQLELSLNRFRG-KTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSL--EGLDISECKF--S 348 (922)
Q Consensus 274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~ 348 (922)
+++ .+|.. .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 888 56665 78888888888888887 467788888888888888888875 345666677 8888888888 6
Q ss_pred ccCchhhcCCC-CccEEEccCCCCcCccchhhhhhccCCcceEeCcCcc-------ccccccccccCCCCccEEEecCCC
Q 002435 349 SQIPSSLRNLA-QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNR-------LSLFTKAIFNTSQKFNFVGLRSCN 420 (922)
Q Consensus 349 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~L~~L~L~~~~ 420 (922)
+..|..+..+. ....+++++|.+.+.++...+ ..+++|+.+++++|. +.+..+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~------------------ 214 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILA------------------ 214 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHH------------------
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchh------------------
Confidence 66676666654 233556667766655554333 455666666666554 211111
Q ss_pred CCCCcccccCCCCccEEECcCCCCCCCCCccccc-cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCC
Q 002435 421 LNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIE-PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGP 499 (922)
Q Consensus 421 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~ 499 (922)
.+..+++|+.|++++|.+.+..+..+.. ...+
T Consensus 215 ------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~----------------------------------------- 247 (520)
T 2z7x_B 215 ------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT----------------------------------------- 247 (520)
T ss_dssp ------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-----------------------------------------
T ss_pred ------hhccccchhhccccccccCHHHHHHHHHHhhhC-----------------------------------------
Confidence 2233344444444444333211111000 0011
Q ss_pred CCCCCCCCceeeccCCcccCcCChhhh----hcCCccceEEccCccCCCCCC-chhhhc---cCcccEEEcCCCcccCCC
Q 002435 500 LPVPPPQTKHYLVSNNSLTGKIPFWIC----NSSNSLEILDLSYNNLSGLLP-QCLDNF---SDHLSILDLQHNKFCGSI 571 (922)
Q Consensus 500 ~~~~~~~l~~L~ls~n~l~~~ip~~~~----~~~~~L~~L~Ls~N~l~~~~p-~~l~~l---~~~L~~L~Ls~N~l~~~~ 571 (922)
+++.+++++|.++|.+|..++ ..+++|+.+++++|.+ .+| ..+..+ . +|+.|++++|.+.+..
T Consensus 248 ------~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~-~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 248 ------TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM-NIKNFTVSGTRMVHML 318 (520)
T ss_dssp ------SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC-CCSEEEEESSCCCCCC
T ss_pred ------cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC-ceeEEEcCCCcccccc
Confidence 223333333333333333331 1256677777777776 344 344333 2 4666777766665322
Q ss_pred cccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCcc--CcchhhcCCCCCCEEEcCCCcccccCCCCCCC
Q 002435 572 PQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSWLGTLRELNVLILKSNKLHGMIREPNTG 649 (922)
Q Consensus 572 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 649 (922)
.+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..++.+++|++|++++|++.+.+|... +
T Consensus 319 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~ 395 (520)
T 2z7x_B 319 --CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-C 395 (520)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-C
T ss_pred --chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-h
Confidence 12455666666666666666666666666666666666666664 344555555555555555555554322211 1
Q ss_pred CCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccc
Q 002435 650 CGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPN 729 (922)
Q Consensus 650 ~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 729 (922)
..++
T Consensus 396 ~~l~---------------------------------------------------------------------------- 399 (520)
T 2z7x_B 396 SWTK---------------------------------------------------------------------------- 399 (520)
T ss_dssp CCCT----------------------------------------------------------------------------
T ss_pred ccCc----------------------------------------------------------------------------
Confidence 2233
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls 809 (922)
.|+.|+|++|++++.+|..+. ++|++|||++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 355556666666655555553 57777888888877 667767778888888888888885333347778888888888
Q ss_pred CCccccCCC
Q 002435 810 NNNLTGPIP 818 (922)
Q Consensus 810 ~N~lsg~iP 818 (922)
+|++++.+|
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 888877665
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-42 Score=417.30 Aligned_cols=521 Identities=21% Similarity=0.209 Sum_probs=341.9
Q ss_pred CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435 111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL 190 (922)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l 190 (922)
+++++|||++|+++.. .|.+|.++++|++|||++|.+.+..|..|.++++|++|+|++|+++.++ +..+.++
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-------~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-------LGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-------GGGGTTC
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-------HHHhcCC
Confidence 4688888888888643 3456888888888888888887666667888888888888888764332 2346677
Q ss_pred CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc-cCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC----
Q 002435 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG-RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL---- 265 (922)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L---- 265 (922)
++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 777777777777776656667777777777777777654 345666677777777777777766666655544332
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEeeccCCC------CcccccccCCCCCc
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK-TPHSMGNFTRLYWLSLASNDFS------GELPASFGNLRSLE 338 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~ 338 (922)
..++++.|.++.. +........++.+++.+|..... .+..+..+..++...+..+... ......+..+..+.
T Consensus 204 ~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCccccc-CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 3566666666633 33333334456666666544321 2233455555555555433221 11122223333344
Q ss_pred eEecCCCccCc---cCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEE
Q 002435 339 GLDISECKFSS---QIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG 415 (922)
Q Consensus 339 ~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 415 (922)
..++..+.... ..+..+..+.+++.+.+.++.+....+ + .....++.|++.+|.+..+... .+..++.++
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~-~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~ 355 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---F-SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLT 355 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---G-GSCCCCSEEEEESCEESSCCCC---BCTTCCEEE
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---c-ccchhhhhhhcccccccCcCcc---cchhhhhcc
Confidence 33333322211 122233444455555555554442211 1 2344555555555555444332 234455555
Q ss_pred ecCCCCCCCcccccCCCCccEEECcCCCCCCC--CCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccC
Q 002435 416 LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGK--VPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSY 493 (922)
Q Consensus 416 L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~ 493 (922)
+..+.....+. ...+++|+.++++.|.+... .+..+. .+.+++++++..|........
T Consensus 356 l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~----------------- 415 (635)
T 4g8a_A 356 FTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSN----------------- 415 (635)
T ss_dssp EESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSC-----------------
T ss_pred cccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccccccccccc-----------------
Confidence 55554443322 22344555555555554322 122222 344455555444443322111
Q ss_pred ccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcc-cCCCc
Q 002435 494 NYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKF-CGSIP 572 (922)
Q Consensus 494 n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l-~~~~p 572 (922)
....++++.+++..+......+...+..+.+++.+++++|.+.+..+..+..++ .++.|++++|.+ .+..|
T Consensus 416 -------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 416 -------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp -------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEEC
T ss_pred -------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccch-hhhhhhhhhcccccccCc
Confidence 123567888888888877777766666689999999999999999888888887 799999999985 45678
Q ss_pred ccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCC
Q 002435 573 QTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGF 652 (922)
Q Consensus 573 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 652 (922)
..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+ ..+
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l 565 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHF 565 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCC
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--Hhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988766 455
Q ss_pred -CCccEEEccCCcCCCCCChhhhhcc
Q 002435 653 -PELRIIDLSNNRFTGKLPSKYFQCW 677 (922)
Q Consensus 653 -~~L~~LdLs~N~l~g~ip~~~~~~~ 677 (922)
++|+.|+|++|+|.|.+...||..|
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred hCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 6899999999999999998888765
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=420.37 Aligned_cols=462 Identities=21% Similarity=0.229 Sum_probs=376.1
Q ss_pred CEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCC
Q 002435 163 VSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLM 242 (922)
Q Consensus 163 ~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 242 (922)
++||+++|.++.++ ..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|+
T Consensus 3 ~~l~ls~n~l~~ip--------~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP--------KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCC--------CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccccc--------cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 58999999975443 2222 8999999999999998889999999999999999999988899999999999
Q ss_pred EEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCC--cEEEee
Q 002435 243 YLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRL--YWLSLA 319 (922)
Q Consensus 243 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~ 319 (922)
+|+|++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| +.|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 9999999998 56665 89999999999999997 578999999999999999999986 457777888 999999
Q ss_pred ccCC--CCcccccccCCC-CCceEecCCCccCccCch-hhcCCCCccEEEccCCC-------CcCccchhhhhhccCCcc
Q 002435 320 SNDF--SGELPASFGNLR-SLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHNN-------FSGPIDLDMFLVNFKHLE 388 (922)
Q Consensus 320 ~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~ 388 (922)
+|.+ .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ . +..+++|+
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~-l~~l~~L~ 223 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--K-LQTNPKLS 223 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--G-GGGCTTCC
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--h-hccccchh
Confidence 9999 778888777765 344678889988876554 57789999999999997 555444 2 37899999
Q ss_pred eEeCcCcccccccccccc---CCCCccEEEecCCCCC-CCcccc-----cCCCCccEEECcCCCCCCCCC-cccccc-CC
Q 002435 389 HLSLSSNRLSLFTKAIFN---TSQKFNFVGLRSCNLN-EFPNFL-----KNQHYLEVLDLSCNKIHGKVP-KWLIEP-SM 457 (922)
Q Consensus 389 ~L~Ls~n~l~~~~~~~~~---~~~~L~~L~L~~~~l~-~lp~~l-----~~~~~L~~L~Ls~n~l~~~~p-~~~~~~-~l 457 (922)
.|++++|.+++.....+. ..++|++|++++|+++ .+|..+ ..+++|+.+++++|.+ .+| ..+... ..
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc
Confidence 999999987754322111 1357888888888887 777777 7788888888888877 455 333210 11
Q ss_pred CCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEc
Q 002435 458 QNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDL 537 (922)
Q Consensus 458 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~L 537 (922)
.+|+.|++++|.+..... +...++++.|++++|.+++.+|..+.. +++|++|++
T Consensus 302 ~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L 355 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC-------------------------PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLIL 355 (520)
T ss_dssp CCCSEEEEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEEC
T ss_pred CceeEEEcCCCccccccc-------------------------hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEc
Confidence 457777777666543211 134677889999999999888887766 899999999
Q ss_pred cCccCCC--CCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCc
Q 002435 538 SYNNLSG--LLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ 614 (922)
Q Consensus 538 s~N~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 614 (922)
++|++++ .+|..+..++ +|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+
T Consensus 356 ~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred cCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 9999997 4567788888 799999999999985665 488899999999999999988887765 799999999999
Q ss_pred CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhh-hcc
Q 002435 615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYF-QCW 677 (922)
Q Consensus 615 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~-~~~ 677 (922)
++ .+|..+..+++|++|++++|++++. |.. .+..+++|+.|++++|+++|.++..++ ..|
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l-~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLKSV-PDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCC-CTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCCcc-CHH-HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence 99 6788778999999999999999965 433 346789999999999999999987777 544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-42 Score=410.15 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=66.5
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVS 809 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls 809 (922)
.|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|++|+|++|+|++..+..+..+++|++|+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 466666777777666666554 67888888888888 567767788888888888888885444448888889999999
Q ss_pred CCccccCCCC
Q 002435 810 NNNLTGPIPQ 819 (922)
Q Consensus 810 ~N~lsg~iP~ 819 (922)
+|++.|.+|.
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9988887764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-40 Score=393.00 Aligned_cols=460 Identities=22% Similarity=0.238 Sum_probs=297.4
Q ss_pred CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS 216 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 216 (922)
..+++|+++|++++ +|..+. ++|++|++++|. +++..+..+.++++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~-------------------------------i~~~~~~~~~~l~~ 77 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNS-------------------------------ISELRMPDISFLSE 77 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSC-------------------------------CCCCCGGGTTTCTT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCC-------------------------------ccccChhhhccCCC
Confidence 34677777777643 565443 556666666655 44444555666666
Q ss_pred CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEcc
Q 002435 217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELS 295 (922)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~ 295 (922)
|++|++++|++++..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..+.++++|++|+++
T Consensus 78 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred ccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC
Confidence 666666666666555666666666666666666665 34433 56666666666666654 234566666666666666
Q ss_pred CCCCCCCCcccccCCCCC--cEEEeeccCC--CCcccccccCCC-CCceEecCCCccCccCch-hhcCCCCccEEEccCC
Q 002435 296 LNRFRGKTPHSMGNFTRL--YWLSLASNDF--SGELPASFGNLR-SLEGLDISECKFSSQIPS-SLRNLAQLKFLEFSHN 369 (922)
Q Consensus 296 ~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n 369 (922)
+|.+.+.. +..+++| ++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++. .+..+++|+.+++++|
T Consensus 155 ~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 155 AAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp CSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred CCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 66665432 3333333 6666666666 555555555443 111445566666554332 3455666777777766
Q ss_pred CC-----cCccchhhhhhccCCcceEeCcCcccccccccc---ccCCCCccEEEecCCCCC-CCcccc-----cCCCCcc
Q 002435 370 NF-----SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAI---FNTSQKFNFVGLRSCNLN-EFPNFL-----KNQHYLE 435 (922)
Q Consensus 370 ~l-----~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~L~~L~L~~~~l~-~lp~~l-----~~~~~L~ 435 (922)
.. .+.+ .. +..+++|+.++++++.+.+..... .....+|++|++++|.++ .+|..+ ..++.|+
T Consensus 232 ~~~~~~l~~~~--~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 232 DENCQRLMTFL--SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp STTHHHHHHHH--HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred ccccchHHHHH--HH-HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 42 1111 11 245566666666665544321110 011235666666666655 555544 4555555
Q ss_pred EEECcCCCCCCCCCc-cccc-cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCC-CCCCCCceeec
Q 002435 436 VLDLSCNKIHGKVPK-WLIE-PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLP-VPPPQTKHYLV 512 (922)
Q Consensus 436 ~L~Ls~n~l~~~~p~-~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~l 512 (922)
.++++.+.+ .+|. ++.. ....++++|++++|.+ ..... ...++++.|++
T Consensus 309 ~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~--------------------------~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 309 IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF--------------------------IHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC--------------------------CCCCCCSSCCCCCEEEC
T ss_pred hhhccccee--ecChhhhhhhhccCcceEEEccCCCc--------------------------ccccCccCCCCceEEEC
Confidence 555555555 3332 1110 0113455555555544 32221 44678899999
Q ss_pred cCCcccCcCChhhhhcCCccceEEccCccCCCC--CCchhhhccCcccEEEcCCCcccCCCc-ccccCCCCccEEecCCC
Q 002435 513 SNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL--LPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMMIDLSDN 589 (922)
Q Consensus 513 s~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 589 (922)
++|.+++.+|..+.. +++|++|++++|++++. +|..+..++ +|++|++++|++++.+| ..+..+++|++|++++|
T Consensus 361 ~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 361 TQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp CSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 999999888877766 89999999999999974 345678887 79999999999998455 46889999999999999
Q ss_pred cccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCC
Q 002435 590 LLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKL 669 (922)
Q Consensus 590 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i 669 (922)
++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++. |.. .+..+++|+.|++++|++.|.+
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l-~~~-~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV-PDG-VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC-CTT-STTTCTTCCCEECCSCCBCCCH
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC-CHH-HHhcCCCCCEEEecCCCcCCCc
Confidence 99988777665 79999999999999 5677777999999999999999965 433 3467899999999999999999
Q ss_pred Chhhh
Q 002435 670 PSKYF 674 (922)
Q Consensus 670 p~~~~ 674 (922)
|..++
T Consensus 514 ~~~~~ 518 (562)
T 3a79_B 514 PGIRY 518 (562)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 98776
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-40 Score=374.99 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=67.1
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++.+|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 36666666666666 56666666666666666666666666666666666655555444321 3456666
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435 294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373 (922)
Q Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 373 (922)
+++|.+++. |.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ++.. .++|++|++++|.+++
T Consensus 78 l~~~~l~~l-p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSSL-PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSCC-CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCccccC-CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 666666542 211 2455566666665554 3432 2455555555555553 1110 1345555555554443
Q ss_pred ccchhhhhhccCCcceEeCcCcccc
Q 002435 374 PIDLDMFLVNFKHLEHLSLSSNRLS 398 (922)
Q Consensus 374 ~~~~~~~~~~l~~L~~L~Ls~n~l~ 398 (922)
+| . + ..+++|++|++++|+++
T Consensus 146 -lp-~-~-~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 146 -LP-E-L-QNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp -CC-C-C-TTCTTCCEEECCSSCCS
T ss_pred -Cc-c-c-CCCCCCCEEECCCCcCc
Confidence 33 1 1 34444444444444443
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.4e-40 Score=354.52 Aligned_cols=293 Identities=33% Similarity=0.528 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEECCCCCCCC-
Q 002435 25 LCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCL--WDGVECNENT--GHVIKLDLSNSCLQG- 99 (922)
Q Consensus 25 ~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g- 99 (922)
.|.++|++||++||+++.++. .+++|.. +.+||. |.||.|+..+ ++|++|+|+++.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-------------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-------------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence 599999999999999996542 4789976 678998 9999998655 799999999999998
Q ss_pred -cccCccccccCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCccc
Q 002435 100 -FINSSSGLFKLVHLEWLDLAF-NYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIE 177 (922)
Q Consensus 100 -~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 177 (922)
.++. .+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.
T Consensus 66 ~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---- 138 (313)
T 1ogq_A 66 YPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---- 138 (313)
T ss_dssp EECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE----
T ss_pred cccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC----
Confidence 6654 888899999999985 777655 7888888899999999998888888888888888888888888732
Q ss_pred ccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCC-CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcc
Q 002435 178 LKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLS-SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP 256 (922)
Q Consensus 178 ~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 256 (922)
+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..++ |++|++++|.+++..|
T Consensus 139 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 139 ---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp ---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred ---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 23445566666666666666666666666666665 666666666666666666665555 6666666666665555
Q ss_pred cccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCC
Q 002435 257 TSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRS 336 (922)
Q Consensus 257 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 336 (922)
..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~ 292 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGG
T ss_pred HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccc
Confidence 5666666666666666666544433 455555555555555555555555555555555555555555444443 44445
Q ss_pred CceEecCCCc
Q 002435 337 LEGLDISECK 346 (922)
Q Consensus 337 L~~L~Ls~n~ 346 (922)
|+.+++++|+
T Consensus 293 L~~l~l~~N~ 302 (313)
T 1ogq_A 293 FDVSAYANNK 302 (313)
T ss_dssp SCGGGTCSSS
T ss_pred cChHHhcCCC
Confidence 5555555544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-38 Score=363.85 Aligned_cols=399 Identities=23% Similarity=0.237 Sum_probs=250.8
Q ss_pred EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCc-ccccCCCCCCcEEEcccC
Q 002435 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGEL-PTSIGNLDCLKRLDISWN 273 (922)
Q Consensus 195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n 273 (922)
.++.+++.++. +|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 44555554433 232 1 145666666666666555555666666666666666555333 344555666666666666
Q ss_pred CCCCCchhhhhCCCCCCEEEccCCCCCCCCccc--ccCCCCCcEEEeeccCCCCccccc-ccCCCCCceEecCCCccCcc
Q 002435 274 ELSGELPASIGNLASLEQLELSLNRFRGKTPHS--MGNFTRLYWLSLASNDFSGELPAS-FGNLRSLEGLDISECKFSSQ 350 (922)
Q Consensus 274 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~ 350 (922)
.+++..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|++++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 655555555555555555555555555433322 455555555555555555444433 44455555555555555444
Q ss_pred CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccC
Q 002435 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKN 430 (922)
Q Consensus 351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~ 430 (922)
.+..+..+ ...+|+.|++++|.+.......+.. .....+..
T Consensus 170 ~~~~l~~l------------------------~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~~~~~~ 210 (455)
T 3v47_A 170 CEEDLLNF------------------------QGKHFTLLRLSSITLQDMNEYWLGW---------------EKCGNPFK 210 (455)
T ss_dssp CTTTSGGG------------------------TTCEEEEEECTTCBCTTCSTTCTTH---------------HHHCCTTT
T ss_pred Chhhhhcc------------------------ccccccccccccCcccccchhhccc---------------cccccccc
Confidence 44433332 1133444444444433332211100 00011223
Q ss_pred CCCccEEECcCCCCCCCCCcccccc-CCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCce
Q 002435 431 QHYLEVLDLSCNKIHGKVPKWLIEP-SMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKH 509 (922)
Q Consensus 431 ~~~L~~L~Ls~n~l~~~~p~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~ 509 (922)
+++|++|++++|++++..|..+... ...+++.|++++|...+.....
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------------- 258 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------------------------------- 258 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC--------------------------------
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch--------------------------------
Confidence 4556666666666666655554311 2256666666666544321110
Q ss_pred eeccCCcccCcCChhhhh-cCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435 510 YLVSNNSLTGKIPFWICN-SSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588 (922)
Q Consensus 510 L~ls~n~l~~~ip~~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 588 (922)
+.+.+..+..+.. ..++|+.|++++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|+|++
T Consensus 259 -----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 259 -----TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp -----CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----hhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 0011000111110 146899999999999999999999988 799999999999999899999999999999999
Q ss_pred CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668 (922)
Q Consensus 589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 668 (922)
|++++..|..|.++++|++|+|++|++++..|.+|..+++|++|+|++|++++..+..+ ..+++|+.|++++|+++|.
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccC
Confidence 99999989999999999999999999999999999999999999999999998765543 6789999999999999999
Q ss_pred CC-hhhhhc
Q 002435 669 LP-SKYFQC 676 (922)
Q Consensus 669 ip-~~~~~~ 676 (922)
+| ..++..
T Consensus 411 ~~~~~~l~~ 419 (455)
T 3v47_A 411 CPRIDYLSR 419 (455)
T ss_dssp TTTTHHHHH
T ss_pred CCcchHHHH
Confidence 99 444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.8e-38 Score=359.12 Aligned_cols=200 Identities=21% Similarity=0.206 Sum_probs=135.7
Q ss_pred CCccceEEccCccCCCCCCchhhhcc--CcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccC--CCC
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFS--DHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVN--CSS 604 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--l~~ 604 (922)
+++|++|++++|++++..|..+.... .+|+.|++++|.+.+.. +..+.+.+..+..+.. .++
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSC
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccC
Confidence 45667777777776666655554431 14666666666554321 1112222222222222 246
Q ss_pred CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684 (922)
Q Consensus 605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~ 684 (922)
|++|++++|++++..|.++..+++|++|++++|++.+..|..+ .+++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~------------------------------- 323 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLT------------------------------- 323 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCT-------------------------------
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcc-------------------------------
Confidence 6666666666666666666666666666666666555433322 2222
Q ss_pred cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcc
Q 002435 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS 764 (922)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~ 764 (922)
.|+.|+|++|++++..|..|+++++|++|+|++|+
T Consensus 324 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 324 ---------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp ---------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred ---------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence 35566666666666667778889999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 002435 765 LHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG 820 (922)
Q Consensus 765 l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~ 820 (922)
+++.+|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999999999999999999988888899999999999999999999853
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-37 Score=355.12 Aligned_cols=357 Identities=22% Similarity=0.272 Sum_probs=211.7
Q ss_pred cCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCC-------------CEEeCcCCCCCCCc
Q 002435 189 KLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKL-------------MYLDLSFNNLLGEL 255 (922)
Q Consensus 189 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~ 255 (922)
+.++|++|++++|.+ +.+|+.++++++|++|++++|++.|.+|..++++++| ++|++++|++++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468999999999999 8899999999999999999999999999999998875 888888888775 3
Q ss_pred ccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCC
Q 002435 256 PTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLR 335 (922)
Q Consensus 256 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 335 (922)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++.. .. .++|++|++++|.+++ +| .+++++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 332 3678888888888875 5543 367888888888777532 11 1577788888887775 56 477777
Q ss_pred CCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEE
Q 002435 336 SLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVG 415 (922)
Q Consensus 336 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 415 (922)
+|++|++++|++++ +|.. .++|++|++++|.+++ ++ .+ ..+++|++|++++|.+++++.. .++|+.|+
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~-~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~ 221 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--EL-QNLPFLTAIYADNNSLKKLPDL----PLSLESIV 221 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CC-TTCTTCCEEECCSSCCSSCCCC----CTTCCEEE
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cc-cCCCCCCEEECCCCcCCcCCCC----cCcccEEE
Confidence 88888888877775 4432 2477777777777765 33 12 5677777777777777665432 24667777
Q ss_pred ecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCcc
Q 002435 416 LRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNY 495 (922)
Q Consensus 416 L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~ 495 (922)
+++|.++.+|. +..+++|++|++++|++++ +|. ..++|++|++++|.++++.
T Consensus 222 l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~--------------------- 273 (454)
T 1jl5_A 222 AGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLP--------------------- 273 (454)
T ss_dssp CCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCC---------------------
T ss_pred CcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccC---------------------
Confidence 77777766664 5666667777777776664 332 2355666666666655432
Q ss_pred ccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccc
Q 002435 496 LQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF 575 (922)
Q Consensus 496 l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~ 575 (922)
..+++++.+++++|.+++ +|.. .++|+.|++++|++++. + .++++|++|++++|++++ +|..
T Consensus 274 ------~~~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 274 ------ELPQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp ------CCCTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred ------cccCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc-
Confidence 223455555555555554 1110 13566666666666542 1 122256666666666664 3332
Q ss_pred cCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCcc--Ccchhhc
Q 002435 576 LSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISG--TFPSWLG 624 (922)
Q Consensus 576 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~ 624 (922)
+++|++|++++|++++ +|. .+++|++|++++|++++ .+|.++.
T Consensus 336 --~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 336 --PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp --CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred --CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 3566666666666663 343 35666666666666666 4555444
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-37 Score=352.96 Aligned_cols=367 Identities=19% Similarity=0.186 Sum_probs=231.5
Q ss_pred hhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCC
Q 002435 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS 288 (922)
Q Consensus 209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 288 (922)
..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3444455555555555555532 2 345555555555555555543 2 45555555555555555532 2 455555
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC
Q 002435 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368 (922)
Q Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 368 (922)
|++|++++|++++. + ++.+++|++|++++|.+++. + ++.+++|++|++++|+..+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 55555555555542 2 45555555555555555542 1 455555666666655443333 245555666666666
Q ss_pred CCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCC
Q 002435 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKV 448 (922)
Q Consensus 369 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~ 448 (922)
|++++ ++ +..+++|+.|++++|.++++ .+..+++|+.|++++|+++.+| +..+++|++|++++|++++..
T Consensus 180 n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 66554 22 14556666666666666654 2455666666666666666665 566777778888888777643
Q ss_pred CccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhc
Q 002435 449 PKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNS 528 (922)
Q Consensus 449 p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~ 528 (922)
+. .+++|+.|++++|.+ +.+++++|.+.|.+|. . .
T Consensus 250 ~~-----~l~~L~~L~l~~n~L-------------------------------------~~L~l~~n~~~~~~~~--~-~ 284 (457)
T 3bz5_A 250 VS-----TLSKLTTLHCIQTDL-------------------------------------LEIDLTHNTQLIYFQA--E-G 284 (457)
T ss_dssp CT-----TCTTCCEEECTTCCC-------------------------------------SCCCCTTCTTCCEEEC--T-T
T ss_pred HH-----HCCCCCEEeccCCCC-------------------------------------CEEECCCCccCCcccc--c-c
Confidence 22 456777777666543 4455666666666663 2 2
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+++|+.|++++|...+.+|.. .. +|+.|++++| ++|++|++++|++++. .+..+++|+.|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred cccCCEEECCCCcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEE
Confidence 678999999999887776643 23 5666666554 6899999999999985 38899999999
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccce
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQ 681 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~ 681 (922)
++++|++++ ++.|..|++++|++.|. ..+..|+.+++++|+++|.+|..++..+.++.
T Consensus 345 ~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~ 402 (457)
T 3bz5_A 345 SCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402 (457)
T ss_dssp ECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred ECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence 999999986 25667778999999887 34567888999999999999988776655543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.8e-36 Score=341.88 Aligned_cols=325 Identities=19% Similarity=0.216 Sum_probs=226.6
Q ss_pred cCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc
Q 002435 226 ELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH 305 (922)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 305 (922)
...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | +..+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 34445566788899999999999999865 4 688999999999999999864 4 88899999999999999875 3
Q ss_pred cccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccC
Q 002435 306 SMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFK 385 (922)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 385 (922)
++.+++|++|++++|.+++ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.++ +..++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----~~~l~ 170 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----VTPQT 170 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC----CTTCT
T ss_pred -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc----cccCC
Confidence 8889999999999999986 34 78889999999999999874 37888899999999997666653 25678
Q ss_pred CcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEc
Q 002435 386 HLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNL 465 (922)
Q Consensus 386 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L 465 (922)
+|++|++++|++++++ +..+++|+.|++++|.++.++ +..+++|++|++++|++++ +| +. .+++|++|++
T Consensus 171 ~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l 240 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFDC 240 (457)
T ss_dssp TCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEEC
T ss_pred cCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEEe
Confidence 8888888888888764 556777777777777777663 5667777777777777765 34 22 5566666666
Q ss_pred cCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC
Q 002435 466 SHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL 545 (922)
Q Consensus 466 ~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~ 545 (922)
++|++++.. +.. +++|+.|++++|
T Consensus 241 ~~N~l~~~~--------------------------~~~-------------------------l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 241 SVNPLTELD--------------------------VST-------------------------LSKLTTLHCIQT----- 264 (457)
T ss_dssp CSSCCSCCC--------------------------CTT-------------------------CTTCCEEECTTC-----
T ss_pred eCCcCCCcC--------------------------HHH-------------------------CCCCCEEeccCC-----
Confidence 665554321 111 344555555443
Q ss_pred CCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcC
Q 002435 546 LPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGT 625 (922)
Q Consensus 546 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 625 (922)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 265 ----------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------ 317 (457)
T 3bz5_A 265 ----------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------ 317 (457)
T ss_dssp ----------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------
T ss_pred ----------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------
Confidence 24445555555555554 34556666666666665555543 2344444444443
Q ss_pred CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435 626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 667 (922)
++|++|++++|++++. + ...+++|+.||+++|++++
T Consensus 318 -~~L~~L~L~~N~l~~l-~----l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 318 -PKLVYLYLNNTELTEL-D----VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -TTCCEEECTTCCCSCC-C----CTTCTTCSEEECCSSCCCB
T ss_pred -ccCCEEECCCCccccc-c----cccCCcCcEEECCCCCCCC
Confidence 4566666666666663 1 2456666777777766653
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-33 Score=322.90 Aligned_cols=148 Identities=28% Similarity=0.327 Sum_probs=77.1
Q ss_pred ccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHH
Q 002435 108 FKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLV 187 (922)
Q Consensus 108 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~ 187 (922)
..+++|+.|+++++.+.. +| .+..+++|++|++++|.+.+. |+ ++++++|++|++++|.+... +. +
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--------~~-~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI--------TP-L 108 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--------GG-G
T ss_pred hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC--------hh-h
Confidence 346677777777777642 44 366677777777777776443 33 66777777777777664221 11 4
Q ss_pred hcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcE
Q 002435 188 KKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKR 267 (922)
Q Consensus 188 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 267 (922)
.++++|++|++++|.+++..+ +.++++|++|++++|.+.+. + .++.+++|++|+++ |.+.+.. .+.++++|++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCE
Confidence 455555555555555544322 44555555555555544431 1 24444444444443 2222221 1444444444
Q ss_pred EEcccCCCC
Q 002435 268 LDISWNELS 276 (922)
Q Consensus 268 L~L~~n~l~ 276 (922)
|++++|.++
T Consensus 182 L~l~~n~l~ 190 (466)
T 1o6v_A 182 LDISSNKVS 190 (466)
T ss_dssp EECCSSCCC
T ss_pred EECcCCcCC
Confidence 444444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-33 Score=321.03 Aligned_cols=327 Identities=30% Similarity=0.376 Sum_probs=166.4
Q ss_pred ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (922)
+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+++. +. +.++++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 137 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLN 137 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCC
Confidence 3344444444444444443222 4444444444444444443322 44444555555555444432 11 44445555
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435 291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370 (922)
Q Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 370 (922)
+|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 138 ~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 138 RLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc
Confidence 555555544432 1 24445555555553 2222221 144555555555555555432 224455555555555555
Q ss_pred CcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCc
Q 002435 371 FSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPK 450 (922)
Q Consensus 371 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~ 450 (922)
+.+..+ ...+++|++|++++|.++.+ + .+..+++|++|++++|.+.+..+
T Consensus 211 l~~~~~----~~~l~~L~~L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 211 ISDITP----LGILTNLDELSLNGNQLKDI------------------------G-TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCGG----GGGCTTCCEEECCSSCCCCC------------------------G-GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cccccc----ccccCCCCEEECCCCCcccc------------------------h-hhhcCCCCCEEECCCCccccchh-
Confidence 543322 13344455555554444432 2 23444555555555555554333
Q ss_pred cccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCC
Q 002435 451 WLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSN 530 (922)
Q Consensus 451 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~ 530 (922)
+. .+++|+.|++++|.+++.. . +.. ++
T Consensus 261 -~~--~l~~L~~L~l~~n~l~~~~------------------------------------------------~-~~~-l~ 287 (466)
T 1o6v_A 261 -LS--GLTKLTELKLGANQISNIS------------------------------------------------P-LAG-LT 287 (466)
T ss_dssp -GT--TCTTCSEEECCSSCCCCCG------------------------------------------------G-GTT-CT
T ss_pred -hh--cCCCCCEEECCCCccCccc------------------------------------------------c-ccC-CC
Confidence 21 3444444444444332211 0 111 45
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
+|+.|++++|++++..+ +..++ +|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 56666666666665432 45555 56677777776665554 55667777777777777654 35667777777777
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 642 (922)
++|++++..| +..+++|+.|++++|++++.
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 7777776665 66677777777777777663
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=332.42 Aligned_cols=258 Identities=19% Similarity=0.144 Sum_probs=213.8
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+++|++|++++|.+++..|..|..++ +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 77888888888888888888888887 78889998888888888888888889999999998887777778888899999
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL 688 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~ 688 (922)
++++|++.+..+..|..+++|+.|++++|++.+.+|... ....+|+.|++++|+++ .+|...+..
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~------------ 246 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRH------------ 246 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTT------------
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHHhcC------------
Confidence 999998888888888888899999998888777766654 33458889999998887 455443322
Q ss_pred cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768 (922)
Q Consensus 689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 768 (922)
.+.|+.|+|++|.+++..+..|..+++|+.|+|++|++++.
T Consensus 247 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 247 ---------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred ---------------------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 24688999999999999889999999999999999999999
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCC
Q 002435 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKP 841 (922)
Q Consensus 769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~ 841 (922)
.|..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+....+.......+.++...|..|
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999999999999999999999999999999999999999999876532222222334566777777654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.9e-35 Score=316.74 Aligned_cols=259 Identities=35% Similarity=0.539 Sum_probs=226.0
Q ss_pred CccceEEccCccCCC--CCCchhhhccCcccEEEcCC-CcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc
Q 002435 530 NSLEILDLSYNNLSG--LLPQCLDNFSDHLSILDLQH-NKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK 606 (922)
Q Consensus 530 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 606 (922)
.+++.|++++|.+++ .+|..+..++ +|++|++++ |.+++.+|..|..+++|++|++++|++++.+|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467888888888888 7888888887 788888884 888888888888888888888888888888888888888888
Q ss_pred EEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCC-CccEEEccCCcCCCCCChhhhhccccceeccc
Q 002435 607 FLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNT 685 (922)
Q Consensus 607 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~ 685 (922)
+|+|++|++++.+|..+..+++|++|++++|++++.+|..+ ..++ +|+.|++++|++++.+|..+ ..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~--------- 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN--------- 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence 88888888888888888888888888888888888777655 5566 88999999998887777542 10
Q ss_pred ccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccc
Q 002435 686 SELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSL 765 (922)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l 765 (922)
.. |+.|+|++|++++.+|..|+.+++|+.|+|++|++
T Consensus 197 ------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 197 ------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 12 78999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 002435 766 HGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQGNQFPTFDKTSFNGNLGLCGKPLPKE 845 (922)
Q Consensus 766 ~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~~~~~~~~~~s~~gn~~lcg~~~~~~ 845 (922)
++.+|. +..+++|++|+|++|+++|.+|..+.++++|++|++++|+++|.+|...++..+....+.||+++||.|++ .
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~ 311 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-A 311 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-C
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-C
Confidence 988877 88999999999999999999999999999999999999999999999888888888899999999998876 4
Q ss_pred C
Q 002435 846 C 846 (922)
Q Consensus 846 c 846 (922)
|
T Consensus 312 C 312 (313)
T 1ogq_A 312 C 312 (313)
T ss_dssp C
T ss_pred C
Confidence 6
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=310.36 Aligned_cols=301 Identities=21% Similarity=0.237 Sum_probs=212.2
Q ss_pred CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435 111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL 190 (922)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l 190 (922)
+++++|+|++|.+.+. .|..|.++++|++|+|++|.+.+..|..++++++|++|+|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~------------------- 91 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR------------------- 91 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------------
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-------------------
Confidence 3556666666655432 34455555666666666655555555555555555555555554
Q ss_pred CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEc
Q 002435 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDI 270 (922)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 270 (922)
+++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 92 ------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 92 ------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp ------------CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ------------CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 44444556788899999999999998888888888999999999999988887888888999999999
Q ss_pred ccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCcc
Q 002435 271 SWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQ 350 (922)
Q Consensus 271 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 350 (922)
++|.+++..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|++++.
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 99988877777788888999999998888887777888888888888888887777776666666888888888888765
Q ss_pred CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc-ccc
Q 002435 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLK 429 (922)
Q Consensus 351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~ 429 (922)
.+..+..+++|+.|++++|.+++ ++...+ ..+++|++|++++|+++++.+..|..+++|+.|++++|.++.++. .+.
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPIST-IEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCE-ECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred CHHHhcCccccCeeECCCCcCCc-cChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 55667777778888887777763 333333 566777777777777776666666555555555555555554443 334
Q ss_pred CCCCccEEECcCCCCC
Q 002435 430 NQHYLEVLDLSCNKIH 445 (922)
Q Consensus 430 ~~~~L~~L~Ls~n~l~ 445 (922)
.+++|++|++++|++.
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 4555555555555544
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=299.43 Aligned_cols=350 Identities=19% Similarity=0.162 Sum_probs=186.0
Q ss_pred CCCCCCCCCCCCCcc-ccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcc-ccCCCC
Q 002435 60 TASWKPEEANIDCCL-WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPE-IINLSR 137 (922)
Q Consensus 60 ~~~w~~~~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~-l~~l~~ 137 (922)
+++|.. +.+||. |.++.|.-..-++ ........... .-..++++++|+++++.+.. +|+. +..+++
T Consensus 3 ~~~~~~---~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~ 70 (390)
T 3o6n_A 3 VKPRQP---EYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ 70 (390)
T ss_dssp ----CC---EECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCC
T ss_pred cCCCCC---ccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhccccc
Confidence 567876 667774 5555553211111 11111111111 22345677777777776632 4443 566777
Q ss_pred CCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCC
Q 002435 138 LSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSL 217 (922)
Q Consensus 138 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 217 (922)
|++|++++|.+.+..+..++.+++|++|++++|.+ ++..|..++++++|
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------RYLPPHVFQNVPLL 119 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------------CCCCTTTTTTCTTC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCC-------------------------------CcCCHHHhcCCCCC
Confidence 77777777776555555666666666666666653 33334444555555
Q ss_pred CEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCC
Q 002435 218 TLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN 297 (922)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 297 (922)
++|++++|++....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|++|++++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 5555555555533223344555555555555555544444455555555555555555432 1334455555555555
Q ss_pred CCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccch
Q 002435 298 RFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDL 377 (922)
Q Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 377 (922)
.+.+ +...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+.+..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 4442 22234555555555555432 221 134566666666665542 3455566666666666665543332
Q ss_pred hhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCC
Q 002435 378 DMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSM 457 (922)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l 457 (922)
.+ ..+++|++|++++|++++++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|+++... +. .+
T Consensus 267 -~~-~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~--~~ 338 (390)
T 3o6n_A 267 -PF-VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LS--TH 338 (390)
T ss_dssp -GG-TTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CC--TT
T ss_pred -Hc-cccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---ch--hh
Confidence 22 455666666666666655433 224566777777777777777776777777888888888776442 12 56
Q ss_pred CCccEEEccCCccccc
Q 002435 458 QNFSYLNLSHNFLIGF 473 (922)
Q Consensus 458 ~~L~~L~L~~n~l~~~ 473 (922)
++|+.|++++|++.+.
T Consensus 339 ~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred ccCCEEEcCCCCccch
Confidence 7777888887777653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-32 Score=302.45 Aligned_cols=322 Identities=21% Similarity=0.214 Sum_probs=191.4
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
++++++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666544333455666666666666666655555566666666666666666555555555555555555
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435 294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373 (922)
Q Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 373 (922)
+++|.++...+..+..+++|++|++++ |.+.+..+..+..+++|++|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSN------------------------NNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS------------------------SCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCC------------------------CccCccChhhccCCCCCCEEECCCCcCCc
Confidence 555555533333334444444444444 44444334444444444444444444432
Q ss_pred ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI 453 (922)
Q Consensus 374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 453 (922)
. +. ..+++|++|++++|.++.+. ..++|++|++++|.+... |..
T Consensus 180 ~-~~----~~l~~L~~L~l~~n~l~~~~----------------------------~~~~L~~L~l~~n~l~~~-~~~-- 223 (390)
T 3o6n_A 180 V-DL----SLIPSLFHANVSYNLLSTLA----------------------------IPIAVEELDASHNSINVV-RGP-- 223 (390)
T ss_dssp C-CG----GGCTTCSEEECCSSCCSEEE----------------------------CCSSCSEEECCSSCCCEE-ECC--
T ss_pred c-cc----ccccccceeecccccccccC----------------------------CCCcceEEECCCCeeeec-ccc--
Confidence 1 11 23344444444444433221 112344444444444311 000
Q ss_pred ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE 533 (922)
Q Consensus 454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~ 533 (922)
. .++|+
T Consensus 224 --~------------------------------------------------------------------------~~~L~ 229 (390)
T 3o6n_A 224 --V------------------------------------------------------------------------NVELT 229 (390)
T ss_dssp --C------------------------------------------------------------------------CSSCC
T ss_pred --c------------------------------------------------------------------------ccccc
Confidence 0 23466
Q ss_pred eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613 (922)
Q Consensus 534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 613 (922)
.|++++|.+++. ..+..++ +|++|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|++|+|++|
T Consensus 230 ~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 230 ILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp EEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred EEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 666666666543 3555555 67777777777777777778888888888888888875 4555677888888888888
Q ss_pred cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA 679 (922)
Q Consensus 614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~ 679 (922)
+++ .+|..+..+++|++|++++|+++... ...+++|+.|++++|++.|.....++..+..
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred cce-ecCccccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 888 45666778888888999888887652 2557889999999999988766666555443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.4e-31 Score=317.13 Aligned_cols=321 Identities=22% Similarity=0.227 Sum_probs=220.2
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
+++++.+++++|.+....+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788999999988866666678888888888888888877777888888888888888888877777777888888888
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435 294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373 (922)
Q Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 373 (922)
|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.+++.. +.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~----------------- 189 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS----------------- 189 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG-----------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh-----------------
Confidence 8888777555555566666666666666666555555555555555555555554321 22
Q ss_pred ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI 453 (922)
Q Consensus 374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 453 (922)
.+++|+.|++++|.++++. ..++|+.|++++|.+....+.
T Consensus 190 ---------~l~~L~~L~l~~n~l~~l~----------------------------~~~~L~~L~ls~n~l~~~~~~--- 229 (597)
T 3oja_B 190 ---------LIPSLFHANVSYNLLSTLA----------------------------IPIAVEELDASHNSINVVRGP--- 229 (597)
T ss_dssp ---------GCTTCSEEECCSSCCSEEE----------------------------CCTTCSEEECCSSCCCEEECS---
T ss_pred ---------hhhhhhhhhcccCcccccc----------------------------CCchhheeeccCCcccccccc---
Confidence 2344444444444333211 112344444444444311000
Q ss_pred ccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccc
Q 002435 454 EPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLE 533 (922)
Q Consensus 454 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~ 533 (922)
+ .++|+
T Consensus 230 -------------------------------------------------------------------~-------~~~L~ 235 (597)
T 3oja_B 230 -------------------------------------------------------------------V-------NVELT 235 (597)
T ss_dssp -------------------------------------------------------------------C-------CSCCC
T ss_pred -------------------------------------------------------------------c-------CCCCC
Confidence 0 13466
Q ss_pred eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613 (922)
Q Consensus 534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 613 (922)
.|++++|.+++ +..+..++ +|+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|
T Consensus 236 ~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 236 ILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp EEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred EEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 66666666664 24566666 67788888888877777788888888888888888876 4566677888888888888
Q ss_pred cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN 678 (922)
Q Consensus 614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~ 678 (922)
+++ .+|.++..+++|++|+|++|++.+.. ...+++|+.|++++|+++|.....++..+.
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 888 56777788888999999999887652 245789999999999998876666655443
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.6e-30 Score=285.42 Aligned_cols=307 Identities=26% Similarity=0.359 Sum_probs=191.1
Q ss_pred ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
.+..+++|++|+++++.+.. +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+..+ +
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--------~- 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--------S- 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--------G-
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--------h-
Confidence 34556777777777776642 33 36667777777777777643 333 67777777777777764322 1
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
.+.++++|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 35666677777777766665322 6677777777777775543333 36677777777777777664433 6667777
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 345 (922)
++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 180 ~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 7777777777643 22 6667777777777777665443 6666777777777777664333 666777777777777
Q ss_pred ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP 425 (922)
Q Consensus 346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp 425 (922)
.+++. +.+..+++|++|++++|.+++. + . +..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~--~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI-S--V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC-G--G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC-h--h-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 76643 3466677777777777766642 2 1 255666666666666666655555555555555555555555444
Q ss_pred ccccCCCCccEEECcCCCC
Q 002435 426 NFLKNQHYLEVLDLSCNKI 444 (922)
Q Consensus 426 ~~l~~~~~L~~L~Ls~n~l 444 (922)
. +..+++|++|++++|.+
T Consensus 328 ~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 328 P-LASLSKMDSADFANQVI 345 (347)
T ss_dssp G-GGGCTTCSEESSSCC--
T ss_pred C-hhhhhccceeehhhhcc
Confidence 3 44455555555555544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.9e-31 Score=310.28 Aligned_cols=348 Identities=20% Similarity=0.159 Sum_probs=192.1
Q ss_pred CCCCCCCCCCCCCCcc----ccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCc-ccc
Q 002435 59 KTASWKPEEANIDCCL----WDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPP-EII 133 (922)
Q Consensus 59 ~~~~w~~~~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~-~l~ 133 (922)
.+++|.+ +.+||. |.++.|+. .++-........ . .-..+.+++.|++++|.+.. +|+ .+.
T Consensus 8 ~l~~~~~---~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~--~--~~l~l~~l~~l~l~~~~l~~--lp~~~~~ 72 (597)
T 3oja_B 8 NVKPRQP---EYKCIDSNLQYDCVFYDV------HIDMQTQDVYFG--F--EDITLNNQKIVTFKNSTMRK--LPAALLD 72 (597)
T ss_dssp ---CCCS---EECCCCC--CCSEEECSC------EECSSCCCCEES--C--SSGGGCCCSEEEESSCEESE--ECTHHHH
T ss_pred cccCCCC---CCcCcccCcCceeEecCc------eecccccccccC--c--ccccCCCceEEEeeCCCCCC--cCHHHHc
Confidence 4678876 667774 66665542 112111111111 1 22345677777777776642 443 356
Q ss_pred CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccC
Q 002435 134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLAN 213 (922)
Q Consensus 134 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 213 (922)
.+++|++|+|++|.+.+..|..++.+++|++|+|++|.+ ++..|..+++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------~~~~~~~~~~ 121 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------RYLPPHVFQN 121 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------------CCCCTTTTTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-------------------------------CCCCHHHHcC
Confidence 677777777777777666566666666777777766653 3333444445
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
+++|++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++. + +..+++|+.|+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhh
Confidence 55555555555555533333345555555555555555544444555555555555555555432 1 33345555555
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcC
Q 002435 294 LSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSG 373 (922)
Q Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 373 (922)
+++|.+.+ +...++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 55554442 22334455555555555422 2211 2456666666666554 2445556666666666666554
Q ss_pred ccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCcccc
Q 002435 374 PIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLI 453 (922)
Q Consensus 374 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 453 (922)
..+.. + ..+++|+.|++++|.+++++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+++..+ .
T Consensus 269 ~~~~~-~-~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~---~ 342 (597)
T 3oja_B 269 IMYHP-F-VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL---S 342 (597)
T ss_dssp EESGG-G-TTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC---C
T ss_pred CCHHH-h-cCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh---h
Confidence 43322 2 455666666666666665432 2345667777777777777777777777888888888888775432 1
Q ss_pred ccCCCCccEEEccCCccccc
Q 002435 454 EPSMQNFSYLNLSHNFLIGF 473 (922)
Q Consensus 454 ~~~l~~L~~L~L~~n~l~~~ 473 (922)
.+++|+.|++++|++.+.
T Consensus 343 --~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 343 --THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp --TTCCCSEEECCSSCEEHH
T ss_pred --hcCCCCEEEeeCCCCCCh
Confidence 567788888888877653
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.6e-30 Score=283.50 Aligned_cols=149 Identities=30% Similarity=0.455 Sum_probs=67.1
Q ss_pred CCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEE
Q 002435 213 NLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQL 292 (922)
Q Consensus 213 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 292 (922)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 34444555555444442 12 24444555555555555443222 4455555555555555442 22 34455555555
Q ss_pred EccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435 293 ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372 (922)
Q Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 372 (922)
++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 555555443222 44444444444444433322222 4444555555555555443221 444444555555544444
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=9.6e-32 Score=293.21 Aligned_cols=283 Identities=19% Similarity=0.216 Sum_probs=175.0
Q ss_pred CCCCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCC-CCCCCCccccceEecC--------CCCcEEEEECCC
Q 002435 24 PLCHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPE-EANIDCCLWDGVECNE--------NTGHVIKLDLSN 94 (922)
Q Consensus 24 ~~~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~ 94 (922)
..+..+|+.||++||+++..++.. ...+|... ....++|.|.|+.|.. ...+|+.|+|++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~-----------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~ 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNR-----------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTT-----------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhccCCchh-----------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC
Confidence 456778999999999998544331 35678410 0156899999999952 235677777777
Q ss_pred CCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCC
Q 002435 95 SCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYN 174 (922)
Q Consensus 95 ~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 174 (922)
+.+.. ++. .++++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+.
T Consensus 91 n~l~~-lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~- 163 (328)
T 4fcg_A 91 VPLPQ-FPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL- 163 (328)
T ss_dssp SCCSS-CCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-
T ss_pred CCchh-cCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-
Confidence 77763 333 5666777777777777775 36777777777777777777775 66777777777777777765422
Q ss_pred cccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCC
Q 002435 175 LIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGE 254 (922)
Q Consensus 175 ~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 254 (922)
+.+|..+.. . ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|.+++
T Consensus 164 ------~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 164 ------TELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp ------CCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred ------cccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 112211111 0 00011223566666666666655 555556666666666666666653
Q ss_pred cccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCC
Q 002435 255 LPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNL 334 (922)
Q Consensus 255 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 334 (922)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 34455666666666666666665666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCceEecCCCcc
Q 002435 335 RSLEGLDISECKF 347 (922)
Q Consensus 335 ~~L~~L~Ls~n~l 347 (922)
++|+.+++..+.+
T Consensus 301 ~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 301 PANCIILVPPHLQ 313 (328)
T ss_dssp CTTCEEECCGGGS
T ss_pred cCceEEeCCHHHH
Confidence 6666666665544
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.1e-32 Score=312.49 Aligned_cols=136 Identities=22% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCC----CCchhccCCCCCCEEeccCccCCccCcccc
Q 002435 160 SNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISS----PIPHSLANLSSLTLLSLSGCELRGRIPSLL 235 (922)
Q Consensus 160 ~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 235 (922)
++|++||+++|++.. ..+...+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+
T Consensus 3 ~~l~~L~Ls~~~l~~------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD------ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCH------HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCc------hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 467888888877432 1233446677777777777777764 235556666777777777777654333222
Q ss_pred -CCCC----CCCEEeCcCCCCCC----CcccccCCCCCCcEEEcccCCCCCCchhhhh-----CCCCCCEEEccCCCCCC
Q 002435 236 -GNLT----KLMYLDLSFNNLLG----ELPTSIGNLDCLKRLDISWNELSGELPASIG-----NLASLEQLELSLNRFRG 301 (922)
Q Consensus 236 -~~l~----~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~ 301 (922)
..++ +|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2233 56677777666653 3455666666666666666666543333222 13455555555555543
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.3e-32 Score=314.62 Aligned_cols=389 Identities=19% Similarity=0.140 Sum_probs=209.7
Q ss_pred CCCCEEeccCccCCccCccc-cCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCCCchhhh-hCCC-
Q 002435 215 SSLTLLSLSGCELRGRIPSL-LGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSGELPASI-GNLA- 287 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 287 (922)
++|++|++++|+++...... +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34566666666655332222 45556666666666665532 33445555556666666555543322222 2233
Q ss_pred ---CCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhc-----CCC
Q 002435 288 ---SLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLR-----NLA 359 (922)
Q Consensus 288 ---~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~ 359 (922)
+|++|++++|.++.... ..++..+..+++|++|++++|.+++..+..+. ..+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 35555555555442110 12234444444444444444444332222111 123
Q ss_pred CccEEEccCCCCcCccc--hhhhhhccCCcceEeCcCcccccccccccc-----CCCCccEEEecCCCCCC-----Cccc
Q 002435 360 QLKFLEFSHNNFSGPID--LDMFLVNFKHLEHLSLSSNRLSLFTKAIFN-----TSQKFNFVGLRSCNLNE-----FPNF 427 (922)
Q Consensus 360 ~L~~L~L~~n~l~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~-----lp~~ 427 (922)
+|++|++++|.+++... ....+..+++|++|++++|.+.......+. ..++|+.|++++|.++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 45555555554442211 011123345555555555554433222211 13345555555555443 3445
Q ss_pred ccCCCCccEEECcCCCCCCCCCccccc---cCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCC
Q 002435 428 LKNQHYLEVLDLSCNKIHGKVPKWLIE---PSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPP 504 (922)
Q Consensus 428 l~~~~~L~~L~Ls~n~l~~~~p~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~ 504 (922)
+..+++|++|++++|++.+.....+.. ..+++|++|++++|.++....
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----------------------------- 273 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----------------------------- 273 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----------------------------
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----------------------------
Confidence 556666666666666665432111110 023444444444444322100
Q ss_pred CCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhc----cCcccEEEcCCCcccCC----Cccccc
Q 002435 505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNF----SDHLSILDLQHNKFCGS----IPQTFL 576 (922)
Q Consensus 505 ~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l----~~~L~~L~Ls~N~l~~~----~p~~~~ 576 (922)
..++..+.. +++|++|++++|.+++..+..+... .++|++|++++|.+++. ++..+.
T Consensus 274 --------------~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 274 --------------GDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp --------------HHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred --------------HHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 013444444 7788888888888875544444433 12688899998888765 456677
Q ss_pred CCCCccEEecCCCcccccCCccccC-----CCCCcEEECCCCcCcc----CcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435 577 SGRSLMMIDLSDNLLQGRIPRSLVN-----CSSLKFLDLGNNQISG----TFPSWLGTLRELNVLILKSNKLHGMIREPN 647 (922)
Q Consensus 577 ~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 647 (922)
.+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++......
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 7889999999999888765554443 6789999999999986 778888889999999999998875411000
Q ss_pred ---CCCCCCCccEEEccCCcCCC
Q 002435 648 ---TGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 648 ---~~~~l~~L~~LdLs~N~l~g 667 (922)
......+|+.|++.++.+..
T Consensus 419 ~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 419 VESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHhccCCcchhheeecccccCH
Confidence 00123468888888877664
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-28 Score=269.95 Aligned_cols=288 Identities=22% Similarity=0.238 Sum_probs=203.8
Q ss_pred CccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceE
Q 002435 410 KFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTL 489 (922)
Q Consensus 410 ~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 489 (922)
.++.++++++.++.+|..+ .++|++|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~----------------- 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISK----------------- 92 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCE-----------------
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCc-----------------
Confidence 4555666666666665543 24566666666666655444444 45555555555544432
Q ss_pred eccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccC
Q 002435 490 DLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCG 569 (922)
Q Consensus 490 ~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 569 (922)
..|..+.. +++|++|++++|.++ .+|..+. + +|++|++++|++++
T Consensus 93 ------------------------------~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 93 ------------------------------IHEKAFSP-LRKLQKLYISKNHLV-EIPPNLP--S-SLVELRIHDNRIRK 137 (332)
T ss_dssp ------------------------------ECGGGSTT-CTTCCEEECCSSCCC-SCCSSCC--T-TCCEEECCSSCCCC
T ss_pred ------------------------------cCHhHhhC-cCCCCEEECCCCcCC-ccCcccc--c-cCCEEECCCCccCc
Confidence 22333333 677888888888877 4454443 3 68888888888887
Q ss_pred CCcccccCCCCccEEecCCCccc--ccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCC
Q 002435 570 SIPQTFLSGRSLMMIDLSDNLLQ--GRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPN 647 (922)
Q Consensus 570 ~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 647 (922)
..+..|..+++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|++.+..+..+
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 77777888888888888888885 3667777777 88888888888886 444433 678888888888887765544
Q ss_pred CCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccc
Q 002435 648 TGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKV 727 (922)
Q Consensus 648 ~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 727 (922)
..+++|+.|++++|++++..+.. +..
T Consensus 214 --~~l~~L~~L~L~~N~l~~~~~~~-~~~--------------------------------------------------- 239 (332)
T 2ft3_A 214 --LRYSKLYRLGLGHNQIRMIENGS-LSF--------------------------------------------------- 239 (332)
T ss_dssp --TTCTTCSCCBCCSSCCCCCCTTG-GGG---------------------------------------------------
T ss_pred --cCCCCCCEEECCCCcCCcCChhH-hhC---------------------------------------------------
Confidence 56788888888888887544322 211
Q ss_pred cccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCC------CCCCEEeCCCCcCc--ccCcccccC
Q 002435 728 PNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNL------TGLESLDLSNNKFS--GQIPQQLVD 799 (922)
Q Consensus 728 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L------~~L~~L~Ls~N~l~--g~ip~~l~~ 799 (922)
.+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|... ..|+.|++++|.+. +..|..+..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 245788899999998 788889999999999999999998888877654 67899999999988 778888999
Q ss_pred CCCCCeEeccCCc
Q 002435 800 LTFLEFFNVSNNN 812 (922)
Q Consensus 800 L~~L~~L~ls~N~ 812 (922)
++.|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 9999999999885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.9e-28 Score=265.04 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccC------CCCCCEEeCCCCcCcc--cCcccccCCC
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGN------LTGLESLDLSNNKFSG--QIPQQLVDLT 801 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~------L~~L~~L~Ls~N~l~g--~ip~~l~~L~ 801 (922)
.|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..|.. ...|+.|++++|.+.. ..|..+..+.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 3555666666666 55666666777777777777777666666643 3667777777777753 5566777777
Q ss_pred CCCeEeccCCc
Q 002435 802 FLEFFNVSNNN 812 (922)
Q Consensus 802 ~L~~L~ls~N~ 812 (922)
.++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 77777777774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.8e-28 Score=264.42 Aligned_cols=269 Identities=20% Similarity=0.211 Sum_probs=200.4
Q ss_pred CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC
Q 002435 111 VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL 190 (922)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l 190 (922)
+.|++|+|++|.+.+. .+..++++++|++|+|++|.+.+..|..++++++|++|++++|++..++. .+ .
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------~~--~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KM--P 120 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SC--C
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------hh--c
Confidence 6899999999998753 44579999999999999999988889999999999999999998754322 11 2
Q ss_pred CCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc--cCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEE
Q 002435 191 TNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG--RIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRL 268 (922)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 268 (922)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence 688899999988888777888888899999998888853 667778888888888888888874 444443 788888
Q ss_pred EcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435 269 DISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS 348 (922)
Q Consensus 269 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (922)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 88888888777778888888888888888888777777778888888888888877 66777777888888888888887
Q ss_pred ccCchhhcC------CCCccEEEccCCCCcC-ccchhhhhhccCCcceEeCcCc
Q 002435 349 SQIPSSLRN------LAQLKFLEFSHNNFSG-PIDLDMFLVNFKHLEHLSLSSN 395 (922)
Q Consensus 349 ~~~~~~l~~------l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n 395 (922)
+..+..+.. .+.++.+++++|.+.. .++...| ..+..++.+++++|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccceeEEEeccc
Confidence 655544432 2455566666665532 1222222 34455555555544
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.8e-27 Score=260.60 Aligned_cols=292 Identities=22% Similarity=0.212 Sum_probs=172.0
Q ss_pred CCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEe
Q 002435 312 RLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLS 391 (922)
Q Consensus 312 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 391 (922)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+ ..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAF-SPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGS-TTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHh-hCcCCCCEEE
Confidence 4666666666655 4444432 456666666666665555555666666666666665553222 222 4455555555
Q ss_pred CcCccccccccccccCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccc
Q 002435 392 LSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLI 471 (922)
Q Consensus 392 Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~ 471 (922)
+++|.++ .+|..+. ++|++|++++|++.+..+..+. .+++|++|++++|.++
T Consensus 109 L~~n~l~------------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 109 ISKNHLV------------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCC------------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCB
T ss_pred CCCCcCC------------------------ccCcccc--ccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccc
Confidence 5555544 4444332 4555555555555544444343 4555666666555554
Q ss_pred cccCCCCCCCCCCCCceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhh
Q 002435 472 GFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLD 551 (922)
Q Consensus 472 ~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 551 (922)
........+... +++.+++++|.+++ +|..+ .++|++|++++|.+++..+..+.
T Consensus 161 ~~~~~~~~~~~l----------------------~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 161 NSGFEPGAFDGL----------------------KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp GGGSCTTSSCSC----------------------CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSST
T ss_pred cCCCCcccccCC----------------------ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhc
Confidence 321111111111 23334444444432 33332 24677778888887777767777
Q ss_pred hccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcC------
Q 002435 552 NFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGT------ 625 (922)
Q Consensus 552 ~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------ 625 (922)
.++ +|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 215 ~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 215 RYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 776 6888888888888777777778888888888888887 56777888888888888888888776666654
Q ss_pred CCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCc
Q 002435 626 LRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNR 664 (922)
Q Consensus 626 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~ 664 (922)
.+.|+.|++++|++......+..+..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356788888888876322122233567888888888774
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.3e-28 Score=268.12 Aligned_cols=276 Identities=16% Similarity=0.129 Sum_probs=220.9
Q ss_pred ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 566 (922)
...+++++.++..+...+++++.|++++|.+++..+..+.. +++|++|++++|.+++..|..|.+++ +|++|++++|+
T Consensus 34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhcc-CCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCc
Confidence 34677777777666666778899999999888644445555 88999999999999988888888887 79999999999
Q ss_pred ccCCCcccccCCCCccEEecCCCcccccCC-ccccCCCCCcEEECCCC-cCccCcchhhcCCCCCCEEEcCCCcccccCC
Q 002435 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIP-RSLVNCSSLKFLDLGNN-QISGTFPSWLGTLRELNVLILKSNKLHGMIR 644 (922)
Q Consensus 567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 644 (922)
+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|++.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 987766668889999999999999986554 57888999999999998 5777777889999999999999999988877
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeeccccccc
Q 002435 645 EPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSY 724 (922)
Q Consensus 645 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 724 (922)
..+ ..+++|+.|++++|++. .+|..++..
T Consensus 192 ~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------------------------ 220 (353)
T 2z80_A 192 KSL--KSIQNVSHLILHMKQHI-LLLEIFVDV------------------------------------------------ 220 (353)
T ss_dssp TTT--TTCSEEEEEEEECSCST-THHHHHHHH------------------------------------------------
T ss_pred HHH--hccccCCeecCCCCccc-cchhhhhhh------------------------------------------------
Confidence 665 67889999999999875 444332221
Q ss_pred ccccccceEEEeccccccccCccccc---ccCCCCEEeCCCccccc----cCCccccCCCCCCEEeCCCCcCcccCcccc
Q 002435 725 DKVPNFLTGVILSSNRFDGEIPTSIA---NLKGLQVLSLANNSLHG----HILSCLGNLTGLESLDLSNNKFSGQIPQQL 797 (922)
Q Consensus 725 ~~~~~~l~~L~Ls~N~l~g~ip~~~~---~l~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l 797 (922)
.+.|+.|+|++|++++..+..+. ....++.++|++|.+++ .+|+.++++++|++|||++|+++...+..+
T Consensus 221 ---~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 221 ---TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp ---TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 34588899999999887665544 35678889999998887 478889999999999999999995444446
Q ss_pred cCCCCCCeEeccCCccccCCC
Q 002435 798 VDLTFLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 798 ~~L~~L~~L~ls~N~lsg~iP 818 (922)
.++++|++|++++|++.|.+|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 899999999999999998877
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=266.11 Aligned_cols=249 Identities=20% Similarity=0.197 Sum_probs=206.1
Q ss_pred CCCceeeccCCcccCcCChhhhhcCCccceEEccCccCC-CCCCchhh-------hccCcccEEEcCCCcccCCCcccc-
Q 002435 505 PQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLS-GLLPQCLD-------NFSDHLSILDLQHNKFCGSIPQTF- 575 (922)
Q Consensus 505 ~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~-------~l~~~L~~L~Ls~N~l~~~~p~~~- 575 (922)
.+++.+++++|.+ .+|..+.. .|+.|++++|.++ ..+|..+. +++ +|++|++++|++++.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHH
Confidence 3567778888888 78887776 3899999999994 45666554 566 79999999999999888876
Q ss_pred -cCCCCccEEecCCCcccccCCccccCC-----CCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccC--CCCC
Q 002435 576 -LSGRSLMMIDLSDNLLQGRIPRSLVNC-----SSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI--REPN 647 (922)
Q Consensus 576 -~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~ 647 (922)
..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|++++|++.+.+ +...
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8899999999999999987 8888877 89999999999999988899999999999999999987752 2233
Q ss_pred CCCCCCCccEEEccCCcCCCC--CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccc
Q 002435 648 TGCGFPELRIIDLSNNRFTGK--LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYD 725 (922)
Q Consensus 648 ~~~~l~~L~~LdLs~N~l~g~--ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 725 (922)
.+..+++|+.|++++|++++. ++...+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------------------------------------- 225 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAA-------------------------------------------------- 225 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHh--------------------------------------------------
Confidence 336789999999999998731 1111111
Q ss_pred cccccceEEEeccccccccCc-ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCC
Q 002435 726 KVPNFLTGVILSSNRFDGEIP-TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLE 804 (922)
Q Consensus 726 ~~~~~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 804 (922)
..+.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+
T Consensus 226 -~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 226 -ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp -TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred -cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence 12568999999999999886 55777899999999999999 7788777 8999999999999987 66 99999999
Q ss_pred eEeccCCccccC
Q 002435 805 FFNVSNNNLTGP 816 (922)
Q Consensus 805 ~L~ls~N~lsg~ 816 (922)
+|++++|+++++
T Consensus 300 ~L~L~~N~l~~~ 311 (312)
T 1wwl_A 300 NLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTCTTTCC
T ss_pred EEeccCCCCCCC
Confidence 999999999864
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=261.40 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=223.3
Q ss_pred CCCCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 002435 69 NIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF 148 (922)
Q Consensus 69 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l 148 (922)
...+|.|.|+ |+ .++++++... . .+ .++|++|++++|.+.+. .+..+.++++|++|++++|.+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~~iP-~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLNSIP-S--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCSSCC-T--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-ee----------CCCCCccccc-c--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567899887 64 3455555442 1 33 25899999999998643 344799999999999999999
Q ss_pred CCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCc-hhccCCCCCCEEeccCcc-
Q 002435 149 FGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP-HSLANLSSLTLLSLSGCE- 226 (922)
Q Consensus 149 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~- 226 (922)
.+..|..++++++|++|++++|+++.+. +..+.++++|++|++++|.+++..+ ..+.++++|++|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLS-------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCC-------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCC-------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc
Confidence 8887888999999999999999864322 2458889999999999999986544 478899999999999994
Q ss_pred CCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCccc
Q 002435 227 LRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHS 306 (922)
Q Consensus 227 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 306 (922)
+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 66666778999999999999999999888999999999999999999987443344556899999999999998766554
Q ss_pred cc---CCCCCcEEEeeccCCCC----cccccccCCCCCceEecCCCccCccCchh-hcCCCCccEEEccCCCCcCccc
Q 002435 307 MG---NFTRLYWLSLASNDFSG----ELPASFGNLRSLEGLDISECKFSSQIPSS-LRNLAQLKFLEFSHNNFSGPID 376 (922)
Q Consensus 307 l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 376 (922)
+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|.+.+..+
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 43 45678888888888775 367777888888888888888884 4444 5788888888888888876554
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.9e-29 Score=299.94 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=108.1
Q ss_pred CccccCCCCCCEEECCCCCC---CCcCchhhc------------CCCCCCEEEcCCCCCCCcccccCCChhHHHhc-CC-
Q 002435 129 PPEIINLSRLSYLNLSSAGF---FGQIPSEIL------------ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK-LT- 191 (922)
Q Consensus 129 p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~-l~- 191 (922)
+..+.++++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+.. ..+..+.. ++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-------~~~~~l~~~~~~ 138 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-------LDLDRLAKARAD 138 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-------HHHHHHHHHHGG
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-------HHHHHHHHhccc
Confidence 44566788899999987642 123332222 45666666666664321 11222222 22
Q ss_pred CCCEEEcCCCc-CCC-CCchhccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCC----CcccccCC
Q 002435 192 NLKELALGGVT-ISS-PIPHSLANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLG----ELPTSIGN 261 (922)
Q Consensus 192 ~L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~ 261 (922)
+|++|++++|. ++. .++.....+++|++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 26666665554 111 1112223455666666666655433 22233445556666666655542 22333344
Q ss_pred CCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCC---CCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCc
Q 002435 262 LDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFR---GKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLE 338 (922)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 338 (922)
+++|++|++++|.+.+ ++..+.++++|++|+++..... ...+..+..+++|+.++++++.. +.+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence 5555555555555553 4455555555555555532211 12223334444555555544321 23444444444555
Q ss_pred eEecCCCccCccCc-hhhcCCCCccEEEcc
Q 002435 339 GLDISECKFSSQIP-SSLRNLAQLKFLEFS 367 (922)
Q Consensus 339 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~ 367 (922)
+|++++|.+++... ..+..+++|++|+++
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 55555544433221 223444444444444
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.7e-29 Score=297.49 Aligned_cols=462 Identities=15% Similarity=0.069 Sum_probs=297.0
Q ss_pred CCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCC--CCCCcccc------------CCC
Q 002435 71 DCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFIC--SEIPPEII------------NLS 136 (922)
Q Consensus 71 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~p~~l~------------~l~ 136 (922)
-|++|.++.+... ..+.+... ....++ ..+.++++|++|+|+++.... ..+|..++ .++
T Consensus 40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 3557999865422 12233221 122221 256678999999998864210 11333333 789
Q ss_pred CCCEEECCCCCCCCcCchhhcC-CC-CCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCC----Cchh
Q 002435 137 RLSYLNLSSAGFFGQIPSEILE-LS-NLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSP----IPHS 210 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~----~~~~ 210 (922)
+|++|+|++|.+.+..+..++. ++ +|++|++++|. ......++....++++|++|++++|.+++. ++..
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 9999999999988777777776 44 49999999985 122244666677999999999999998766 4445
Q ss_pred ccCCCCCCEEeccCccCC----ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC---CCchhhh
Q 002435 211 LANLSSLTLLSLSGCELR----GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS---GELPASI 283 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l 283 (922)
...+++|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 678899999999999987 3445556789999999999999885 6788999999999999864332 2344567
Q ss_pred hCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCccc-ccccCCCCCceEecCCCccCccCchhhcCCCCcc
Q 002435 284 GNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELP-ASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLK 362 (922)
Q Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 362 (922)
..+++|+.|+++++. ....|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 888999999998863 34667788889999999999999765433 4468899999999994433333444557789999
Q ss_pred EEEccC-----------CCCcCccchhhhhhccCCcceEeCcCccccccccccccC-CCCccEEEec----CCCCCCCcc
Q 002435 363 FLEFSH-----------NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNT-SQKFNFVGLR----SCNLNEFPN 426 (922)
Q Consensus 363 ~L~L~~-----------n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~L~----~~~l~~lp~ 426 (922)
+|++++ +.+++ .....+...+++|++|+++.+.+++.....+.. +++|+.|+++ .+.++..|.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 999994 44442 222233356888888888877777654444332 5555555554 233333211
Q ss_pred cccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCCC
Q 002435 427 FLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPPQ 506 (922)
Q Consensus 427 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~ 506 (922)
. ..++..+. .+++|++|++++|.-
T Consensus 425 ~------------------~~~~~~~~--~~~~L~~L~L~~~~~------------------------------------ 448 (592)
T 3ogk_B 425 D------------------NGVRSLLI--GCKKLRRFAFYLRQG------------------------------------ 448 (592)
T ss_dssp H------------------HHHHHHHH--HCTTCCEEEEECCGG------------------------------------
T ss_pred H------------------HHHHHHHH--hCCCCCEEEEecCCC------------------------------------
Confidence 0 00111121 345555555543210
Q ss_pred CceeeccCCcccCcCChhhhhcCCccceEEccCccCCCC-CCchhhhccCcccEEEcCCCcccCC-CcccccCCCCccEE
Q 002435 507 TKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGL-LPQCLDNFSDHLSILDLQHNKFCGS-IPQTFLSGRSLMMI 584 (922)
Q Consensus 507 l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 584 (922)
.+++..+..+...+++|+.|++++|++++. ++..+..++ +|++|++++|.+++. ++.....+++|++|
T Consensus 449 ---------~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 449 ---------GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp ---------GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred ---------CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 011111222233355666666666666542 222333444 577777777776543 23334456777777
Q ss_pred ecCCCcccccCCccc-cCCCCCcEEECCCC
Q 002435 585 DLSDNLLQGRIPRSL-VNCSSLKFLDLGNN 613 (922)
Q Consensus 585 ~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N 613 (922)
+|++|++++.....+ ..++.+....+..+
T Consensus 519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 777777765533333 35566666666554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.1e-27 Score=254.81 Aligned_cols=232 Identities=25% Similarity=0.288 Sum_probs=161.6
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCC--CcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGS--IPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+|++|++++|+++...+..|..++ +|++|++++|+++.. .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 566666666666643333455555 566666666666522 24455566667777777776663 45556667777777
Q ss_pred ECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC-CCChhhhhccccceecccc
Q 002435 609 DLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG-KLPSKYFQCWNAMQVVNTS 686 (922)
Q Consensus 609 ~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~~~~~~~~l~~l~~~ 686 (922)
++++|++++..+ ..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+++ .+|.. +.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~----------- 172 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT----------- 172 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh-----------
Confidence 777777665544 456667777777777777766655443 456677777777776653 12211 00
Q ss_pred cccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccc
Q 002435 687 ELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLH 766 (922)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 766 (922)
..+.|+.|+|++|++++..|..++.+++|+.|+|++|+++
T Consensus 173 ----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 173 ----------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ----------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ----------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 0245778888888888888888888899999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCccccCCC
Q 002435 767 GHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT-FLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 767 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~L~ls~N~lsg~iP 818 (922)
+..+..+..+++|+.|||++|++++.+|..+..++ .|++|++++|++++..+
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88888888899999999999999999998888884 89999999999987654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=264.94 Aligned_cols=249 Identities=22% Similarity=0.215 Sum_probs=204.4
Q ss_pred eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588 (922)
Q Consensus 509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 588 (922)
.++.++..++ .+|..+. ++++.|+|++|++++..|..|.+++ +|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 58 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3444444444 4554442 4788888888888888888888887 788999999988888888888889999999999
Q ss_pred CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668 (922)
Q Consensus 589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 668 (922)
|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+..+.++.. .+.++++|+.|++++|++++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-
Confidence 9988877778888899999999999988777778888999999999885544444332 23678889999999998873
Q ss_pred CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccc
Q 002435 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS 748 (922)
Q Consensus 669 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~ 748 (922)
+|. +. ..+.|+.|+|++|++++..|..
T Consensus 211 ~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 211 MPN--LT---------------------------------------------------PLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp CCC--CT---------------------------------------------------TCTTCCEEECTTSCCSEECGGG
T ss_pred ccc--cc---------------------------------------------------ccccccEEECcCCcCcccCccc
Confidence 231 00 0356889999999999999999
Q ss_pred ccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435 749 IANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI 817 (922)
Q Consensus 749 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i 817 (922)
|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++++|++....
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.8e-27 Score=253.06 Aligned_cols=276 Identities=24% Similarity=0.336 Sum_probs=162.4
Q ss_pred ccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcc-ccCCCCCCEEECCCCCCCC-
Q 002435 73 CLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPE-IINLSRLSYLNLSSAGFFG- 150 (922)
Q Consensus 73 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~- 150 (922)
|.|++|.|... +++.. +. .+ .++|++|+|++|.+.. +|.. +.++++|++|+|++|.+..
T Consensus 7 C~~~~l~c~~~------------~l~~i-p~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLTSV-PT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EETTEEECCSS------------CCSSC-CS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred eCCCEEEcCCC------------CcccC-CC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence 78998888643 23322 11 22 2577888888887752 4543 6777778888887777752
Q ss_pred -cCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCc
Q 002435 151 -QIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRG 229 (922)
Q Consensus 151 -~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 229 (922)
..|..+..+++|++|++++|.+.. +|..+..+++|++|++++|++.+
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~~--------------------------------l~~~~~~l~~L~~L~l~~n~l~~ 115 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVIT--------------------------------MSSNFLGLEQLEHLDFQHSNLKQ 115 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEEE--------------------------------EEEEEETCTTCCEEECTTSEEES
T ss_pred cCcccccccccccCEEECCCCcccc--------------------------------ChhhcCCCCCCCEEECCCCcccc
Confidence 235566667777777777776321 23334445555555555555543
Q ss_pred cCc-cccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCC-CchhhhhCCCCCCEEEccCCCCCCCCcccc
Q 002435 230 RIP-SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSG-ELPASIGNLASLEQLELSLNRFRGKTPHSM 307 (922)
Q Consensus 230 ~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 307 (922)
..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+
T Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 332 345555555555555555555555555555555555555555554 345555556666666666666655555556
Q ss_pred cCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCC-CccEEEccCCCCcCccchhhhhhccCC
Q 002435 308 GNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA-QLKFLEFSHNNFSGPIDLDMFLVNFKH 386 (922)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~ 386 (922)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|.+.+..+...+...+..
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 6666666666666666555455566666777777777777666666666663 677777777777665554444344444
Q ss_pred cceEeCcCccccc
Q 002435 387 LEHLSLSSNRLSL 399 (922)
Q Consensus 387 L~~L~Ls~n~l~~ 399 (922)
.+.+.+..+.+..
T Consensus 276 ~~~~~~~~~~~~C 288 (306)
T 2z66_A 276 QRQLLVEVERMEC 288 (306)
T ss_dssp TGGGBSCGGGCBE
T ss_pred hhhhhcccccccc
Confidence 4444444444433
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=261.59 Aligned_cols=249 Identities=23% Similarity=0.231 Sum_probs=204.7
Q ss_pred eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588 (922)
Q Consensus 509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 588 (922)
.++.++..++ .+|..+. ++++.|+|++|++++..+..|.+++ +|++|+|++|++++..+..|.++++|++|+|++
T Consensus 47 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3444444444 4555443 4688888888888887778888887 788999999988888888888889999999999
Q ss_pred CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668 (922)
Q Consensus 589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 668 (922)
|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|.++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-c
Confidence 9998777778888999999999999998877788888999999999885544444432 2367889999999999887 3
Q ss_pred CChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccc
Q 002435 669 LPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTS 748 (922)
Q Consensus 669 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~ 748 (922)
+|. +. ..+.|+.|||++|++++..|..
T Consensus 200 ~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 200 IPN--LT---------------------------------------------------PLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp CCC--CT---------------------------------------------------TCSSCCEEECTTSCCCEECTTT
T ss_pred ccc--cC---------------------------------------------------CCcccCEEECCCCccCccChhh
Confidence 341 00 0356899999999999999999
Q ss_pred ccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCC
Q 002435 749 IANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPI 817 (922)
Q Consensus 749 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~i 817 (922)
|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..++.|+.|++++|++....
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.2e-26 Score=258.61 Aligned_cols=252 Identities=20% Similarity=0.199 Sum_probs=218.5
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
....++.+++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4678899999998 5676554 37999999999999998999999999999999999999998899999999999999
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 690 (922)
++|++++..+..|..+++|++|+|++|++.+..+..+ ..+++|+.|++++|+..+.++...|..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 183 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG-------------- 183 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------------
Confidence 9999998888899999999999999999998765554 678999999999976555555443322
Q ss_pred cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770 (922)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip 770 (922)
.+.|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|
T Consensus 184 -------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 184 -------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp -------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECT
T ss_pred -------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccCh
Confidence 346889999999999 556 48999999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCcCCCCCC
Q 002435 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-NQFPTFDKTSFNGNLGLCGKP 841 (922)
Q Consensus 771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~~~~~~~~~s~~gn~~lcg~~ 841 (922)
..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..|.. ..+..+....+.+||.-|++.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999766543 234455666788999999874
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.1e-26 Score=259.59 Aligned_cols=253 Identities=19% Similarity=0.166 Sum_probs=218.3
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
....++.+++.++ .+|..+. +++++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4578889998888 4676553 47999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 690 (922)
++|++++..+..|..+++|++|+|++|++.+..+..+ ..+++|+.|++++|+..+.+|...|..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 194 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-------------- 194 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence 9999998888889999999999999999998765544 778999999999976555555433221
Q ss_pred cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770 (922)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip 770 (922)
.+.|+.|+|++|++++. | .+..+++|+.|+|++|++++..|
T Consensus 195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence 34688999999999964 4 58899999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCcCCCCCCC
Q 002435 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQG-NQFPTFDKTSFNGNLGLCGKPL 842 (922)
Q Consensus 771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~~-~~~~~~~~~s~~gn~~lcg~~~ 842 (922)
..|.++++|+.|+|++|++++..|..|.++++|+.|++++|+|++..|.. ..+..+....+.+||.-|++.+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999999999999999999999999999765543 2344556667889999888753
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.4e-26 Score=250.53 Aligned_cols=271 Identities=25% Similarity=0.325 Sum_probs=188.4
Q ss_pred CCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCccc----CccccccCCCCCeeeCCCCCCCCCCCCccccC
Q 002435 59 KTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFIN----SSSGLFKLVHLEWLDLAFNYFICSEIPPEIIN 134 (922)
Q Consensus 59 ~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~ 134 (922)
++.+|+.. ...++|.|.++.|...... -..+...|..- ....-...+++++|+|++|.+. .+|+.+++
T Consensus 31 aLl~~k~~-~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~ 102 (328)
T 4fcg_A 31 VLSQWQRH-YNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR 102 (328)
T ss_dssp HHHHHHHH-HHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG
T ss_pred HHHHHHHh-ccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhhh
Confidence 45567641 1247899999988422110 01112222100 0000123477888888888875 47777888
Q ss_pred CCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCC
Q 002435 135 LSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANL 214 (922)
Q Consensus 135 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 214 (922)
+++|++|+|++|.+. .+|..++++++|++|++++|.+ + .+|..++++
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-------------------------------~-~lp~~l~~l 149 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-------------------------------R-ALPASIASL 149 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-------------------------------C-CCCGGGGGC
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-------------------------------c-cCcHHHhcC
Confidence 888888888888876 7777777777888888777763 2 234445555
Q ss_pred CCCCEEeccCccCCccCcccc---------CCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhC
Q 002435 215 SSLTLLSLSGCELRGRIPSLL---------GNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGN 285 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l---------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 285 (922)
++|++|++++|.+.+.+|..+ .++++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 555555555555555555444 44888888888888887 677778888888888888888874 5666888
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEE
Q 002435 286 LASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLE 365 (922)
Q Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 365 (922)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 88888888888888888888888888888888888887778887788888888888888888888888888888888887
Q ss_pred ccCCCCc
Q 002435 366 FSHNNFS 372 (922)
Q Consensus 366 L~~n~l~ 372 (922)
+..+.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 7765443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.3e-26 Score=241.75 Aligned_cols=229 Identities=21% Similarity=0.229 Sum_probs=183.2
Q ss_pred ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612 (922)
Q Consensus 533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 612 (922)
+.++.+++.++ .+|..+ +++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777776 345433 23688888888888877777788888888888888888887788888888888888888
Q ss_pred Cc-CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccccc
Q 002435 613 NQ-ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYM 691 (922)
Q Consensus 613 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~ 691 (922)
|+ +.+..|..|..+++|++|++++|++.+..+..+ ..+++|+.|++++|++++. |...+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~--------------- 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQAL-PDDTFRD--------------- 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCC-CTTTTTT---------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccccc-CHhHhcc---------------
Confidence 86 777777888888888888888888887765544 5678888888888888743 3222211
Q ss_pred ccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCc
Q 002435 692 EGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILS 771 (922)
Q Consensus 692 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~ 771 (922)
.+.|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|.
T Consensus 152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 24578888999999877777788999999999999999999999
Q ss_pred cccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435 772 CLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 772 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~ 819 (922)
.|+++++|+.|+|++|++++..|..+..++.|++|++++|++.+..+.
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 999999999999999999988888899999999999999999876653
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=254.13 Aligned_cols=115 Identities=26% Similarity=0.277 Sum_probs=54.7
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+++|+.|++++|++++ +|..+ + +|++|++++|++++. |. .+.+|+.|++++|++++ +| ..+++|+.|
T Consensus 120 l~~L~~L~L~~N~l~~-lp~~l---~-~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L 186 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPVLP---P-GLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL 186 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred CCCcCEEECCCCCCCc-CCCCC---C-CCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence 3455555555555553 33221 2 455566666655532 22 23455555555555553 23 234555555
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 666 (922)
++++|++++. |. .+++|+.|++++|.++... . .+++|+.|++++|.++
T Consensus 187 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~-----~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 187 SVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A-----LPSGLKELIVSGNRLT 234 (622)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C-----CCTTCCEEECCSSCCS
T ss_pred ECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C-----CCCCCCEEEccCCccC
Confidence 5555555532 22 1244555555555554321 1 1244555555555444
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.5e-25 Score=237.99 Aligned_cols=225 Identities=25% Similarity=0.246 Sum_probs=108.5
Q ss_pred EEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEc
Q 002435 88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL 167 (922)
Q Consensus 88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 167 (922)
+.++.++++++... ..-.++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..++++++|++|++
T Consensus 14 ~~~~c~~~~l~~ip-----~~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-----VGIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCC-----TTCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccCC-----cCCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 45566666655431 11235666666666666432 2344666666666666666665555555555666666666
Q ss_pred CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCc
Q 002435 168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247 (922)
Q Consensus 168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 247 (922)
++|.. +....+..+..+++|++|++++|++.+..+..+.++++|++|+++
T Consensus 88 ~~n~~------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 88 SDNAQ------------------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CSCTT------------------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCC------------------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 55530 222223344444444444444444444444444444455555555
Q ss_pred CCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc
Q 002435 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL 327 (922)
Q Consensus 248 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (922)
+|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 55444443344444444444444444444333333444444444444444444444444444444444444444444333
Q ss_pred cccccCCCCCceEecCCCccC
Q 002435 328 PASFGNLRSLEGLDISECKFS 348 (922)
Q Consensus 328 p~~l~~l~~L~~L~Ls~n~l~ 348 (922)
+..+..+++|++|++++|.+.
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEE
T ss_pred HHHcccCcccCEEeccCCCcc
Confidence 333444444444444444443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-24 Score=255.05 Aligned_cols=203 Identities=29% Similarity=0.311 Sum_probs=138.2
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+++|++|++++|.+++. |. .+. +|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|
T Consensus 100 l~~L~~L~Ls~N~l~~l-~~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L 166 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHL-PA---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKL 166 (622)
T ss_dssp CTTCCEEEECSCCCCCC-CC---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEE
T ss_pred CCCCCEEECcCCcCCCC-CC---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEE
Confidence 45677777777777753 33 223 68888888888775 3432 47788888888887753 33 34677888
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL 688 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~ 688 (922)
++++|++++ +| ..+++|+.|++++|++++.. . .+++|+.|++++|.++ .+|..
T Consensus 167 ~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~-~-----~~~~L~~L~L~~N~l~-~l~~~---------------- 219 (622)
T 3g06_A 167 WAYNNQLTS-LP---MLPSGLQELSVSDNQLASLP-T-----LPSELYKLWAYNNRLT-SLPAL---------------- 219 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCS-SCCCC----------------
T ss_pred ECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC-C-----ccchhhEEECcCCccc-ccCCC----------------
Confidence 888888875 34 45677888888888877642 2 2367788888888776 23310
Q ss_pred cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768 (922)
Q Consensus 689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 768 (922)
++.|+.|+|++|+|++ +| ..+++|+.|+|++|+|++
T Consensus 220 ---------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~- 255 (622)
T 3g06_A 220 ---------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS- 255 (622)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred ---------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-
Confidence 2346777788887775 55 345677788888887774
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~ 819 (922)
+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 444 5667778888888877 5677777788888888888887777664
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.4e-27 Score=255.73 Aligned_cols=246 Identities=24% Similarity=0.232 Sum_probs=140.3
Q ss_pred cCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCC-CCcCchhhc-------CCCCCCEEEcCCCCCCCcccccC
Q 002435 109 KLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGF-FGQIPSEIL-------ELSNLVSLDLSHNSYYNLIELKE 180 (922)
Q Consensus 109 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~~~~~~~~~~ 180 (922)
..++|++|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|++++|++..
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------ 109 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG------ 109 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS------
T ss_pred cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc------
Confidence 344555555555555 245444433 55555555555 334454444 45566666666555321
Q ss_pred CChhHHH--hcCCCCCEEEcCCCcCCCCCchhccCC-----CCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCC
Q 002435 181 PNLGNLV--KKLTNLKELALGGVTISSPIPHSLANL-----SSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLG 253 (922)
Q Consensus 181 ~~l~~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 253 (922)
.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..++++++|++|++++|++.+
T Consensus 110 -~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 110 -TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp -CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred -hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 111111 3444455555555555554 4444444 667777777777666666666677777777777776654
Q ss_pred C--ccccc--CCCCCCcEEEcccCCCCC--Cch-hhhhCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEeeccCCCC
Q 002435 254 E--LPTSI--GNLDCLKRLDISWNELSG--ELP-ASIGNLASLEQLELSLNRFRGKTP-HSMGNFTRLYWLSLASNDFSG 325 (922)
Q Consensus 254 ~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 325 (922)
. .+..+ ..+++|++|++++|.+++ .++ ..+.++++|++|++++|.+++..| ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 3 23333 666777777777777762 122 233466777777777777776553 34455666666666666666
Q ss_pred cccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCCCc
Q 002435 326 ELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNNFS 372 (922)
Q Consensus 326 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 372 (922)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5555554 5666666666666654 43 566666666666666655
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=251.50 Aligned_cols=251 Identities=23% Similarity=0.197 Sum_probs=155.3
Q ss_pred hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435 525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604 (922)
Q Consensus 525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 604 (922)
++..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+ +..+++|++|++++|++++.. ..++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCC
Confidence 333355667777777777666556666666 57777777777665443 666667777777777666432 2366
Q ss_pred CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecc
Q 002435 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVN 684 (922)
Q Consensus 605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~ 684 (922)
|++|++++|++++..+.. +++|++|++++|++++..+..+ ..+++|+.|++++|.+++..|..++..++.++.++
T Consensus 101 L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 101 IETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp CCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred cCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 777777777766554433 4566777777777666554433 44566777777777666544444333444444444
Q ss_pred cccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcc
Q 002435 685 TSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNS 764 (922)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~ 764 (922)
++.+...... .....+.|+.|+|++|++++. |..+..+++|+.|+|++|+
T Consensus 176 L~~N~l~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 176 LQYNFIYDVK-----------------------------GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CTTSCCCEEE-----------------------------CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred CCCCcCcccc-----------------------------cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence 4332211100 000135577777777777754 4447777777777777777
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc-CCccccCCCC
Q 002435 765 LHGHILSCLGNLTGLESLDLSNNKFS-GQIPQQLVDLTFLEFFNVS-NNNLTGPIPQ 819 (922)
Q Consensus 765 l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~L~ls-~N~lsg~iP~ 819 (922)
+++ +|..+..+++|+.|+|++|.++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 774 5666777777777777777777 6677777777777777777 4456766554
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.4e-27 Score=279.71 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccc-cCCCCccEEecCCCcccccCCc-cccCCCCCc
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTF-LSGRSLMMIDLSDNLLQGRIPR-SLVNCSSLK 606 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~ 606 (922)
+++|+.|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 66777777766 55554444444422367777777777765444333 4567777777777777543332 334467777
Q ss_pred EEECCCCcCccCcchhh-cCCCCCCEEEcCCCc
Q 002435 607 FLDLGNNQISGTFPSWL-GTLRELNVLILKSNK 638 (922)
Q Consensus 607 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~ 638 (922)
+|++++|+++......+ ..+++|++..+..+.
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 77777777654333333 445666665555544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.3e-24 Score=228.15 Aligned_cols=226 Identities=22% Similarity=0.179 Sum_probs=183.8
Q ss_pred EEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCc
Q 002435 535 LDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQ 614 (922)
Q Consensus 535 L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 614 (922)
.+-.+..++ .+|..+ +++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|+
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444455554 355544 2368888888888887777788888889999999998888877788888999999999999
Q ss_pred CccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC-CChhhhhccccceeccccccccccc
Q 002435 615 ISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK-LPSKYFQCWNAMQVVNTSELRYMEG 693 (922)
Q Consensus 615 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~~~~l~~l~~~~~~~~~~ 693 (922)
+++..+..|..+++|++|++++|++.+..+..+ ..+++|+.|++++|++++. +|.. +..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~----------------- 147 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN----------------- 147 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-----------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-----------------
Confidence 988888888889999999999999888765444 6788999999999988752 4432 111
Q ss_pred ccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCC----EEeCCCccccccC
Q 002435 694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQ----VLSLANNSLHGHI 769 (922)
Q Consensus 694 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~~~i 769 (922)
.+.|+.|+|++|++++..+..+..+.+|+ .|+|++|.+++..
T Consensus 148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 24688899999999988888888888887 8999999999877
Q ss_pred CccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 002435 770 LSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIPQ 819 (922)
Q Consensus 770 p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP~ 819 (922)
+..+.. .+|+.|+|++|++++..+..+.++++|+.|++++|++.+..|.
T Consensus 194 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 194 PGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 776665 4899999999999998888889999999999999999998874
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.5e-28 Score=286.37 Aligned_cols=464 Identities=15% Similarity=0.094 Sum_probs=236.8
Q ss_pred CCccccceEecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCC-C-CC------------ccccCCC
Q 002435 71 DCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICS-E-IP------------PEIINLS 136 (922)
Q Consensus 71 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~-~p------------~~l~~l~ 136 (922)
-|++|.++... ..+.++++...... +...+.++++|++|+++++....+ . .| .....++
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHhhhh----hceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 35579888322 23455655433211 112466789999999998753211 0 11 1124677
Q ss_pred CCCEEECCCCCCCCcCchhhc-CCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhcc---
Q 002435 137 RLSYLNLSSAGFFGQIPSEIL-ELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLA--- 212 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--- 212 (922)
+|++|+|++|.+.+..+..+. .+++|++|++++|. .++...++..+.++++|++|++++|.+++..+..+.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-----GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-----EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 888888888888777666665 58888888888873 122233556666788888888888877665444443
Q ss_pred -CCCCCCEEeccCcc--CCcc-CccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCC------CCchhh
Q 002435 213 -NLSSLTLLSLSGCE--LRGR-IPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELS------GELPAS 282 (922)
Q Consensus 213 -~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------~~~~~~ 282 (922)
.+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+... ..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 55677777777765 2211 1112234567777777666322225555666666666665544310 023335
Q ss_pred hhCCCCCCEE-EccCCCCCCCCcccccCCCCCcEEEeeccCCCCcc-cccccCCCCCceEecCCCccCcc-CchhhcCCC
Q 002435 283 IGNLASLEQL-ELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGEL-PASFGNLRSLEGLDISECKFSSQ-IPSSLRNLA 359 (922)
Q Consensus 283 l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~ 359 (922)
+.++++|+.| .+..... +.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +... ++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5566666666 2222111 122222234455555555555543221 112334455555555544 2211 111122344
Q ss_pred CccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccc-cCCCCccEEEecCCCCCC-Ccccc-cCCCCccE
Q 002435 360 QLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIF-NTSQKFNFVGLRSCNLNE-FPNFL-KNQHYLEV 436 (922)
Q Consensus 360 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~L~~~~l~~-lp~~l-~~~~~L~~ 436 (922)
+|++|+++++.-.| ....+.++......+ ..+++|+.|.+..+.++. .+..+ ..+++|+.
T Consensus 339 ~L~~L~L~~~~~~g-----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 339 DLRELRVFPSEPFV-----------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp TCCEEEEECSCTTC-----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred CCCEEEEecCcccc-----------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 55555542210000 001122222111111 124445555444444441 11112 23556666
Q ss_pred EECc--C----CCCCCCCC-----ccccccCCCCccEEEccCCccccccCCCCCCCCCCCCceEeccCccccCCCCCCCC
Q 002435 437 LDLS--C----NKIHGKVP-----KWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYDGFTLDLSYNYLQGPLPVPPP 505 (922)
Q Consensus 437 L~Ls--~----n~l~~~~p-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~ 505 (922)
|+++ + +.+++... ..+. .+++|+.|++++ .+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l----------------------------------- 443 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LL----------------------------------- 443 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SC-----------------------------------
T ss_pred eEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cc-----------------------------------
Confidence 6666 2 33331111 1111 344555555433 21
Q ss_pred CCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchh-hhccCcccEEEcCCCcccCCCcc-cccCCCCccE
Q 002435 506 QTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCL-DNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMM 583 (922)
Q Consensus 506 ~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~ 583 (922)
++..+..+...+++|+.|++++|.+++..+..+ ..++ +|++|++++|.+++.... ....+++|++
T Consensus 444 ------------~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 444 ------------TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp ------------CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred ------------cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 112222333335667777777777765444444 3444 678888888777543332 3345778888
Q ss_pred EecCCCcccccCCccc-cCCCCCcEEECCCCcCc
Q 002435 584 IDLSDNLLQGRIPRSL-VNCSSLKFLDLGNNQIS 616 (922)
Q Consensus 584 L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~ 616 (922)
|++++|+++......+ ..++.|++..+..+.-.
T Consensus 511 L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp EEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred EeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 8888888754433344 55678877777766543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.7e-25 Score=252.81 Aligned_cols=222 Identities=23% Similarity=0.220 Sum_probs=155.8
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+++|+.|+|++|.+++..|..|..++ +|++|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34688888888888877777777777 68888888888876655 7778888888888888775432 3778888
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL 688 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~ 688 (922)
++++|++++..+. .+++|+.|+|++|++++..|..+ ..+++|+.|+|++|.+++.+|..+...
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------ 167 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------ 167 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------------
Confidence 8888888776554 35678888888888877766554 456778888888888776555432211
Q ss_pred cccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCcccccc
Q 002435 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGH 768 (922)
Q Consensus 689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 768 (922)
++.|+.|+|++|.|++..+ +..+++|+.|+|++|.+++.
T Consensus 168 ---------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 168 ---------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp ---------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 2346677777777776522 33477777777777777765
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccc-cCCC
Q 002435 769 ILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLT-GPIP 818 (922)
Q Consensus 769 ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~ls-g~iP 818 (922)
+|. ++.+++|+.|+|++|.|++ +|..+..++.|+.|++++|++. |.+|
T Consensus 207 ~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 207 GPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 444 7777777777777777775 5666777777777777777776 4444
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-25 Score=257.26 Aligned_cols=237 Identities=24% Similarity=0.180 Sum_probs=202.1
Q ss_pred CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccE
Q 002435 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMM 583 (922)
Q Consensus 504 ~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 583 (922)
+++++.|++++|.+++..|..+.. +++|++|+|++|.+++..| +..++ +|++|++++|.|++..+ .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCE
Confidence 457889999999998766666666 8999999999999987665 77777 79999999999986443 389999
Q ss_pred EecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCC
Q 002435 584 IDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNN 663 (922)
Q Consensus 584 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N 663 (922)
|++++|.+++..+. .+++|+.|+|++|++++..|..++.+++|++|+|++|.+++.+|..+. ..+++|+.|+|++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC
Confidence 99999999987665 357899999999999999999999999999999999999998776542 25799999999999
Q ss_pred cCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccc
Q 002435 664 RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDG 743 (922)
Q Consensus 664 ~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 743 (922)
.+++..+.. .++.|+.|+|++|++++
T Consensus 180 ~l~~~~~~~------------------------------------------------------~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 180 FIYDVKGQV------------------------------------------------------VFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CCCEEECCC------------------------------------------------------CCTTCCEEECCSSCCCE
T ss_pred ccccccccc------------------------------------------------------cCCCCCEEECCCCCCCC
Confidence 987431100 13568999999999997
Q ss_pred cCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc
Q 002435 744 EIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS-GQIPQQLVDLTFLEFFNVS 809 (922)
Q Consensus 744 ~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~L~ls 809 (922)
..| .++.+++|+.|||++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 206 ~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 206 MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555 59999999999999999997 6778999999999999999999 7888999999999999887
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=9.8e-26 Score=244.86 Aligned_cols=242 Identities=25% Similarity=0.274 Sum_probs=137.5
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+ +..+++|++|++++|.+++.. ..++|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 34445567777777777666666666666667777766666664433 666666666666666655321 22556
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCC
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISEC 345 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 345 (922)
++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------- 165 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------------- 165 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------------
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------------
Confidence 6666666665543322 234455555555555544444444444444444444444443333332
Q ss_pred ccCccCchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc
Q 002435 346 KFSSQIPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP 425 (922)
Q Consensus 346 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp 425 (922)
..+++|++|++++|.+++. +.. ..+++|++|++++|+++++++. +..+++|+.|++++|.++.+|
T Consensus 166 ----------~~l~~L~~L~L~~N~l~~~-~~~---~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 166 ----------ASSDTLEHLNLQYNFIYDV-KGQ---VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp ----------GGTTTCCEEECTTSCCCEE-ECC---CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred ----------hccCcCCEEECCCCcCccc-ccc---cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh
Confidence 2344455555555544422 111 1245555555555555555443 445566666666666666666
Q ss_pred ccccCCCCccEEECcCCCCC-CCCCccccccCCCCccEEEccC
Q 002435 426 NFLKNQHYLEVLDLSCNKIH-GKVPKWLIEPSMQNFSYLNLSH 467 (922)
Q Consensus 426 ~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~l~~L~~L~L~~ 467 (922)
..+..+++|+.|++++|++. +..|.++. .+++|+.+++++
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~ 271 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQT 271 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCC
Confidence 66777778888888888887 55666655 667777777663
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=218.98 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=20.7
Q ss_pred CCCccccceEecCCCCcEEEEECCCCCCCC
Q 002435 70 IDCCLWDGVECNENTGHVIKLDLSNSCLQG 99 (922)
Q Consensus 70 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g 99 (922)
.++|.|.|+.|.-. +.++.++++++.++.
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~ 30 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA 30 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc
Confidence 47899999999632 345567777777665
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=213.70 Aligned_cols=206 Identities=23% Similarity=0.226 Sum_probs=138.8
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
..+.++++++.++. +|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 45667777777763 454332 25666666666666555556666666666666666666555555566666666666
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccc
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRY 690 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 690 (922)
++|++++..+..|..+++|++|++++|++++..+..+ ..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l-------------------------------------- 132 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSL-------------------------------------- 132 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTC--------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcC--------------------------------------
Confidence 6666665555555555555555555555544332221 222
Q ss_pred cccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC
Q 002435 691 MEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL 770 (922)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip 770 (922)
+.|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+
T Consensus 133 --------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 133 --------------------------------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp --------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred --------------------------------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 345566666666665555567788889999999999988888
Q ss_pred ccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccCCC
Q 002435 771 SCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 771 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~iP 818 (922)
..|.++++|+.|+|++|++++..+..+..++.|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 888899999999999999998877788889999999999998877654
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=7.4e-23 Score=217.67 Aligned_cols=212 Identities=24% Similarity=0.241 Sum_probs=164.9
Q ss_pred CccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEE
Q 002435 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609 (922)
Q Consensus 530 ~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 609 (922)
++|++|++++|++++..+..|..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3678888888888877666777777 688888888888877777788888888888888888887778888888888888
Q ss_pred CCCCcCccCcchhhcCCCCCCEEEcCCCccccc-CCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccc
Q 002435 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGM-IREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSEL 688 (922)
Q Consensus 610 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~ 688 (922)
+++|++.+..+..++.+++|++|++++|++.+. +|..+ ..+++|+.|++++|++++..+ ..+..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L-------- 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYC-TDLRVLHQM-------- 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECG-GGGHHHHTC--------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCH-HHhhhhhhc--------
Confidence 888888877777788888888888888888764 34433 567888888888888874333 323222211
Q ss_pred cccccccccchhccccccceeeeeeeeeecccccccccccccce-EEEeccccccccCcccccccCCCCEEeCCCccccc
Q 002435 689 RYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT-GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHG 767 (922)
Q Consensus 689 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~ 767 (922)
..+. .|++++|.+++..+..+.. .+|+.|+|++|++++
T Consensus 176 ----------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 176 ----------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp ----------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred ----------------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 1122 7899999999766665554 489999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCcccCc
Q 002435 768 HILSCLGNLTGLESLDLSNNKFSGQIP 794 (922)
Q Consensus 768 ~ip~~l~~L~~L~~L~Ls~N~l~g~ip 794 (922)
..+..|.++++|+.|+|++|.+++..|
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 888889999999999999999997654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=227.75 Aligned_cols=230 Identities=19% Similarity=0.180 Sum_probs=174.5
Q ss_pred ccceEEccCccCCCCCCc---hhhhccCcccEEEcCCCcccCCCcccc--cCCCCccEEecCCCcccccCC----ccccC
Q 002435 531 SLEILDLSYNNLSGLLPQ---CLDNFSDHLSILDLQHNKFCGSIPQTF--LSGRSLMMIDLSDNLLQGRIP----RSLVN 601 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~---~l~~l~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~ 601 (922)
.++.+.+.++.++...-. .+..++ +|++|++++|++++..|..+ ..+++|++|+|++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456667766665422100 112233 58888888888888888877 788889999999998887555 34557
Q ss_pred CCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc--CCCCCCCCCCCCccEEEccCCcCCCCCChhhhhcccc
Q 002435 602 CSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM--IREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNA 679 (922)
Q Consensus 602 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~ 679 (922)
+++|++|+|++|++.+..|..|+.+++|++|+|++|++.+. ++.......+++|++|++++|+++ .+|.....-
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l--- 219 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL--- 219 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH---
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH---
Confidence 88999999999999888888899999999999999988663 222333356889999999999886 222210000
Q ss_pred ceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCccccccc---CCCC
Q 002435 680 MQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANL---KGLQ 756 (922)
Q Consensus 680 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l---~~L~ 756 (922)
....+.|+.|||++|++++.+|..++.+ ++|+
T Consensus 220 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~ 254 (310)
T 4glp_A 220 ---------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN 254 (310)
T ss_dssp ---------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred ---------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence 0013568899999999999989888887 6999
Q ss_pred EEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcccc
Q 002435 757 VLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTG 815 (922)
Q Consensus 757 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg 815 (922)
+|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus 255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999999 6787775 7999999999999985 33 6788999999999999874
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.8e-24 Score=235.54 Aligned_cols=262 Identities=18% Similarity=0.226 Sum_probs=187.2
Q ss_pred eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC----chhhhccCcccEEEcCCCcccCCCcccccCC-----C
Q 002435 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP----QCLDNFSDHLSILDLQHNKFCGSIPQTFLSG-----R 579 (922)
Q Consensus 509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p----~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l-----~ 579 (922)
.+.++.|.++|.+|..+.. .++|++|++++|.+++..+ ..+..++.+|++|++++|++++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3567778888877776554 5669999999999887766 5666665468999999999888777777664 8
Q ss_pred CccEEecCCCcccccCCccc----cCC-CCCcEEECCCCcCccCcchhhc----C-CCCCCEEEcCCCcccccCCCCC--
Q 002435 580 SLMMIDLSDNLLQGRIPRSL----VNC-SSLKFLDLGNNQISGTFPSWLG----T-LRELNVLILKSNKLHGMIREPN-- 647 (922)
Q Consensus 580 ~L~~L~Ls~N~l~~~~~~~l----~~l-~~L~~L~Ls~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~~~~~~-- 647 (922)
+|++|+|++|++++..+..+ ..+ ++|++|+|++|++++..+..+. . .++|++|+|++|++.+..+...
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 89999999999887766644 444 7899999999998877765543 3 3689999999998875322111
Q ss_pred CCCCCC-CccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeeccccccccc
Q 002435 648 TGCGFP-ELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDK 726 (922)
Q Consensus 648 ~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 726 (922)
....++ +|+.|+|++|++++..+..+...+. .
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-----------------------------------------------~ 193 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLA-----------------------------------------------S 193 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-----------------------------------------------T
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHH-----------------------------------------------h
Confidence 001233 8999999999887554433211100 0
Q ss_pred ccccceEEEecccccccc----Cccccccc-CCCCEEeCCCccccccCC----ccccCCCCCCEEeCCCCcCcccCc---
Q 002435 727 VPNFLTGVILSSNRFDGE----IPTSIANL-KGLQVLSLANNSLHGHIL----SCLGNLTGLESLDLSNNKFSGQIP--- 794 (922)
Q Consensus 727 ~~~~l~~L~Ls~N~l~g~----ip~~~~~l-~~L~~L~Ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~l~g~ip--- 794 (922)
.+..|+.|||++|++++. ++..+..+ ++|++|||++|.+++..+ ..+..++.|+.|+|++|.+++..+
T Consensus 194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 123688899999998873 55566553 589999999999987654 445677889999999998655433
Q ss_pred ----ccccCCCCCCeEeccCCccccCCC
Q 002435 795 ----QQLVDLTFLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 795 ----~~l~~L~~L~~L~ls~N~lsg~iP 818 (922)
..+.+++.|+.||+++|++.+..|
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHhccCCceEEEecCCCcCCCcch
Confidence 457788889999999999876633
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.4e-22 Score=214.77 Aligned_cols=210 Identities=24% Similarity=0.283 Sum_probs=127.6
Q ss_pred ccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhc
Q 002435 132 IINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSL 211 (922)
Q Consensus 132 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l 211 (922)
...+++|++|++++|.+. .++ .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+++..+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI---------SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC---------GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc---------hhhcCCCCCCEEECCCCccCccChhHh
Confidence 344555566666655553 222 355566666666666553221 134455555555555555665555556
Q ss_pred cCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCE
Q 002435 212 ANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQ 291 (922)
Q Consensus 212 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (922)
..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 66666777777766666555555666666777777777666655555666666777777777666555555666666777
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCC
Q 002435 292 LELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLA 359 (922)
Q Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 359 (922)
|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|.+++.++
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7776666666666566666666666666666543 244566666666666666666655543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=9e-22 Score=210.15 Aligned_cols=205 Identities=23% Similarity=0.289 Sum_probs=157.7
Q ss_pred hhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCC
Q 002435 550 LDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLREL 629 (922)
Q Consensus 550 l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 629 (922)
+.+++ +++.+++++|.++. +|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+. +.+++|
T Consensus 6 ~~~l~-~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVA-SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECST-TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccC-CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 34445 68889999988884 454442 6788899999998888888888888999999999988865443 678888
Q ss_pred CEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435 630 NVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709 (922)
Q Consensus 630 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 709 (922)
++|++++|++... |... ..+++|+.|++++|++++..| ..|..
T Consensus 80 ~~L~Ls~N~l~~l-~~~~--~~l~~L~~L~l~~N~l~~l~~-~~~~~--------------------------------- 122 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLG--QTLPALTVLDVSFNRLTSLPL-GALRG--------------------------------- 122 (290)
T ss_dssp CEEECCSSCCSSC-CCCT--TTCTTCCEEECCSSCCCCCCS-STTTT---------------------------------
T ss_pred CEEECCCCcCCcC-chhh--ccCCCCCEEECCCCcCcccCH-HHHcC---------------------------------
Confidence 8888888888744 3332 567888888888888874332 22211
Q ss_pred eeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcC
Q 002435 710 DYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKF 789 (922)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 789 (922)
.+.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+|
T Consensus 123 ------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 123 ------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 24577888888888877777788888888888888888877777788888888888888888
Q ss_pred cccCcccccCCCCCCeEeccCCccccC
Q 002435 790 SGQIPQQLVDLTFLEFFNVSNNNLTGP 816 (922)
Q Consensus 790 ~g~ip~~l~~L~~L~~L~ls~N~lsg~ 816 (922)
+ .+|..+..++.|+.+++++|++.+.
T Consensus 185 ~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 185 Y-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp C-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred C-ccChhhcccccCCeEEeCCCCccCc
Confidence 8 5677777788888888888888654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=208.92 Aligned_cols=212 Identities=24% Similarity=0.226 Sum_probs=168.6
Q ss_pred cCCCCccEEEecCCCCCCCcccccCCCCccEEECcCCCCCCCCCccccccCCCCccEEEccCCccccccCCCCCCCCCCC
Q 002435 406 NTSQKFNFVGLRSCNLNEFPNFLKNQHYLEVLDLSCNKIHGKVPKWLIEPSMQNFSYLNLSHNFLIGFYQHPMFFPRNYD 485 (922)
Q Consensus 406 ~~~~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 485 (922)
..+++++.++++++.++.+|..+. +.++.|++++|++++..+..+. .+++|++|++++|.+++....
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC---------
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC---------
Confidence 345566666666666666665443 5788888888888776666665 677777777777776543211
Q ss_pred CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565 (922)
Q Consensus 486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N 565 (922)
..+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus 74 -----------------------------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N 110 (290)
T 1p9a_G 74 -----------------------------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFN 110 (290)
T ss_dssp -----------------------------------------SCCTTCCEEECCSSCCS-SCCCCTTTCT-TCCEEECCSS
T ss_pred -----------------------------------------CCCCcCCEEECCCCcCC-cCchhhccCC-CCCEEECCCC
Confidence 11678899999999988 5677777777 7999999999
Q ss_pred cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCC
Q 002435 566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645 (922)
Q Consensus 566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 645 (922)
+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++.. |.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~ 189 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK 189 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence 99988888899999999999999999988888899999999999999999988778889999999999999999854 44
Q ss_pred CCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 002435 646 PNTGCGFPELRIIDLSNNRFTGKLPSKYFQC 676 (922)
Q Consensus 646 ~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 676 (922)
.. ...++|+.|+|++|++.|.+...++..
T Consensus 190 ~~--~~~~~L~~l~L~~Np~~C~c~~~~l~~ 218 (290)
T 1p9a_G 190 GF--FGSHLLPFAFLHGNPWLCNCEILYFRR 218 (290)
T ss_dssp TT--TTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred hh--cccccCCeEEeCCCCccCcCccHHHHH
Confidence 33 456799999999999998876555543
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.6e-23 Score=229.80 Aligned_cols=236 Identities=22% Similarity=0.196 Sum_probs=146.4
Q ss_pred CCCccccceEecCCCCcEEEEECCCCCCCCcccCccccccC--CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCC
Q 002435 70 IDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSSGLFKL--VHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAG 147 (922)
Q Consensus 70 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~ 147 (922)
.-|.+|.++.|+. ..++.++++++.+... .+..+ +++++|++++|.+.+. +..+..+++|++|++++|.
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCC
Confidence 3456799998863 3577899998877632 55666 7888888888887653 3346678888888888888
Q ss_pred CCCc-CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCC-cCCCC-CchhccCCCCCCEEeccC
Q 002435 148 FFGQ-IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGV-TISSP-IPHSLANLSSLTLLSLSG 224 (922)
Q Consensus 148 l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~Ls~ 224 (922)
+.+. +|..+.++++|++|++++|.+. ...+..+..+++|++|++++| .+++. ++..+..+++|++|++++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLS-------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCC-------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccC-------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 7655 6777777888888888887632 234455666677777777766 45542 455556666666666666
Q ss_pred c-cCCcc-CccccCCCC-CCCEEeCcCC--CCC-CCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCCCCEEEccCC
Q 002435 225 C-ELRGR-IPSLLGNLT-KLMYLDLSFN--NLL-GELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLASLEQLELSLN 297 (922)
Q Consensus 225 n-~l~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 297 (922)
| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.++++|++|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 6 66543 344555666 6666666666 333 2344455555666666666665 44445555555566666666655
Q ss_pred C-CCCCCcccccCCCCCcEEEeecc
Q 002435 298 R-FRGKTPHSMGNFTRLYWLSLASN 321 (922)
Q Consensus 298 ~-l~~~~~~~l~~l~~L~~L~L~~n 321 (922)
. +.......+..+++|+.|++++|
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3 11111113444555555555544
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.9e-21 Score=205.94 Aligned_cols=199 Identities=23% Similarity=0.280 Sum_probs=107.5
Q ss_pred CCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCC
Q 002435 137 RLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSS 216 (922)
Q Consensus 137 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 216 (922)
++..+++..+.+.+.. ....+++|++|++++|.+..+ ..+..+++|++|++++|.+.+. ..+..+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~---------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 86 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---------QGIQYLPNVRYLALGGNKLHDI--SALKELTN 86 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC---------TTGGGCTTCCEEECTTSCCCCC--GGGTTCTT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc---------cccccCCCCcEEECCCCCCCCc--hhhcCCCC
Confidence 3344455555543332 245667777777777764322 1245566666666666665542 34555566
Q ss_pred CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccC
Q 002435 217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296 (922)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (922)
|++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 66666666655555444555555566666655555555444555555555555555555544444455555555555555
Q ss_pred CCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS 348 (922)
Q Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (922)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 5555444444455555555555555555444444444555555555555443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.4e-23 Score=234.86 Aligned_cols=265 Identities=17% Similarity=0.169 Sum_probs=128.0
Q ss_pred CCccccCCCCCCEEECCCCCCCCcCc----hhhcCCCCCCEEEcCCCCCCCcccc---cCCChhHHHhcCCCCCEEEcCC
Q 002435 128 IPPEIINLSRLSYLNLSSAGFFGQIP----SEILELSNLVSLDLSHNSYYNLIEL---KEPNLGNLVKKLTNLKELALGG 200 (922)
Q Consensus 128 ~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~---~~~~l~~~~~~l~~L~~L~L~~ 200 (922)
++..+..+++|++|+|++|.+.+..+ ..+.++++|++|+|++|.+..+... ....+...+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34444445555555555555543322 2233455555555555432211100 0001112224455555555555
Q ss_pred CcCCC----CCchhccCCCCCCEEeccCccCCccCcccc----CCC---------CCCCEEeCcCCCCC-CCcc---ccc
Q 002435 201 VTISS----PIPHSLANLSSLTLLSLSGCELRGRIPSLL----GNL---------TKLMYLDLSFNNLL-GELP---TSI 259 (922)
Q Consensus 201 n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~Ls~n~l~-~~~~---~~l 259 (922)
|.+++ .++..+..+++|++|+|++|.+.+..+..+ ..+ ++|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 55544 234445555555555555555543222222 222 55555555555554 2222 234
Q ss_pred CCCCCCcEEEcccCCCCC-----CchhhhhCCCCCCEEEccCCCCC----CCCcccccCCCCCcEEEeeccCCCCc----
Q 002435 260 GNLDCLKRLDISWNELSG-----ELPASIGNLASLEQLELSLNRFR----GKTPHSMGNFTRLYWLSLASNDFSGE---- 326 (922)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~---- 326 (922)
..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 455555555555555541 12224555555666666655553 33444555555566666665555543
Q ss_pred cccccc--CCCCCceEecCCCccCc----cCchhh-cCCCCccEEEccCCCCcCccc-hhhhhhccCCcceEeC
Q 002435 327 LPASFG--NLRSLEGLDISECKFSS----QIPSSL-RNLAQLKFLEFSHNNFSGPID-LDMFLVNFKHLEHLSL 392 (922)
Q Consensus 327 ~p~~l~--~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L 392 (922)
++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|.+++..+ ...+...+++++.+++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 344442 26666666666666665 355555 446667777777776665443 2222233444444444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=217.49 Aligned_cols=229 Identities=17% Similarity=0.196 Sum_probs=176.0
Q ss_pred CceeeccCCcccCcCChh---hhhcCCccceEEccCccCCCCCCchh--hhccCcccEEEcCCCcccCCCc----ccccC
Q 002435 507 TKHYLVSNNSLTGKIPFW---ICNSSNSLEILDLSYNNLSGLLPQCL--DNFSDHLSILDLQHNKFCGSIP----QTFLS 577 (922)
Q Consensus 507 l~~L~ls~n~l~~~ip~~---~~~~~~~L~~L~Ls~N~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~p----~~~~~ 577 (922)
++.+.+.++.++...-.. ... +++|++|++++|.+++..|..+ ..++ +|++|++++|++++..+ ..+..
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhh
Confidence 455666665554321111 112 4679999999999999988887 7777 79999999999987655 44567
Q ss_pred CCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccC---c-chhhcCCCCCCEEEcCCCcccccCCCCC-CCCCC
Q 002435 578 GRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGT---F-PSWLGTLRELNVLILKSNKLHGMIREPN-TGCGF 652 (922)
Q Consensus 578 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l 652 (922)
+++|++|+|++|++++..+..|..+++|++|+|++|++.+. . +..+..+++|++|+|++|+++...+... ....+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999988889999999999999999998753 2 2334789999999999999974322110 01356
Q ss_pred CCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccce
Q 002435 653 PELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLT 732 (922)
Q Consensus 653 ~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 732 (922)
++|+.|||++|++++.+|..+... ..++.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~-------------------------------------------------~~~~~L~ 254 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRC-------------------------------------------------MWSSALN 254 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSC-------------------------------------------------CCCTTCC
T ss_pred CCCCEEECCCCCCCccchhhHHhc-------------------------------------------------cCcCcCC
Confidence 899999999999998777442110 0025689
Q ss_pred EEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcc
Q 002435 733 GVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSG 791 (922)
Q Consensus 733 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g 791 (922)
.|+|++|+|+ .+|..+. ++|++|||++|++++. |. +..+++|+.|+|++|.++.
T Consensus 255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999999 7788775 8999999999999975 33 6888999999999999985
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.8e-21 Score=198.35 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=126.2
Q ss_pred cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcC
Q 002435 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK 635 (922)
Q Consensus 556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 635 (922)
..+.++++++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777776 3444332 466777777777766666666666777777777776666666666666666666666
Q ss_pred CCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeee
Q 002435 636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM 715 (922)
Q Consensus 636 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 715 (922)
+|++++..+..+ ..++
T Consensus 92 ~n~l~~~~~~~~--~~l~-------------------------------------------------------------- 107 (251)
T 3m19_A 92 NNQLASLPLGVF--DHLT-------------------------------------------------------------- 107 (251)
T ss_dssp TSCCCCCCTTTT--TTCT--------------------------------------------------------------
T ss_pred CCcccccChhHh--cccC--------------------------------------------------------------
Confidence 665554432222 2233
Q ss_pred eecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcc
Q 002435 716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~ 795 (922)
.|+.|+|++|+|++..+..|+.+++|+.|+|++|++++..+..|+++++|++|+|++|++++..|.
T Consensus 108 --------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 108 --------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred --------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 355566666666655555677788888888888888887777888888888888888888888888
Q ss_pred cccCCCCCCeEeccCCccccCCC
Q 002435 796 QLVDLTFLEFFNVSNNNLTGPIP 818 (922)
Q Consensus 796 ~l~~L~~L~~L~ls~N~lsg~iP 818 (922)
.+.++++|++|++++|++++..+
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTTST
T ss_pred HHhCCCCCCEEEeeCCceeCCcc
Confidence 88888888888888888887643
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.6e-21 Score=200.88 Aligned_cols=196 Identities=20% Similarity=0.197 Sum_probs=123.6
Q ss_pred cccEEEcCCCcccCCCcccccCCCCccEEecCCCc-ccccCCccccCCCCCcEEECCC-CcCccCcchhhcCCCCCCEEE
Q 002435 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNL-LQGRIPRSLVNCSSLKFLDLGN-NQISGTFPSWLGTLRELNVLI 633 (922)
Q Consensus 556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 633 (922)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57777777777776666667777777777777775 6666666777777777777776 777766666677777777777
Q ss_pred cCCCcccccCCCCCCCCCCCCcc---EEEccCC-cCCCCCChhhhhccccceecccccccccccccccchhcccccccee
Q 002435 634 LKSNKLHGMIREPNTGCGFPELR---IIDLSNN-RFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIY 709 (922)
Q Consensus 634 L~~N~l~~~~~~~~~~~~l~~L~---~LdLs~N-~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 709 (922)
+++|++++. |. +..+++|+ .|++++| .++ .+|...|..
T Consensus 112 l~~n~l~~l-p~---~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKMF-PD---LTKVYSTDIFFILEITDNPYMT-SIPVNAFQG--------------------------------- 153 (239)
T ss_dssp EEEECCCSC-CC---CTTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred CCCCCCccc-cc---cccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence 777777663 32 24455555 6777766 554 222221111
Q ss_pred eeeeeeeecccccccccccccce-EEEeccccccccCcccccccCCCCEEeCCCcc-ccccCCccccCC-CCCCEEeCCC
Q 002435 710 DYSLTMSNKGQMMSYDKVPNFLT-GVILSSNRFDGEIPTSIANLKGLQVLSLANNS-LHGHILSCLGNL-TGLESLDLSN 786 (922)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~L-~~L~~L~Ls~ 786 (922)
.+.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.|||++
T Consensus 154 ------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 154 ------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 23455 6666666666 444333233667777777774 776666667777 7777777777
Q ss_pred CcCcccCcccccCCCCCCeEeccCC
Q 002435 787 NKFSGQIPQQLVDLTFLEFFNVSNN 811 (922)
Q Consensus 787 N~l~g~ip~~l~~L~~L~~L~ls~N 811 (922)
|++++..+. .++.|+.|+++++
T Consensus 215 N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCT---TCTTCSEEECTTC
T ss_pred CccccCChh---HhccCceeeccCc
Confidence 777754333 4556666766654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.4e-23 Score=229.00 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=170.3
Q ss_pred CcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCc---CCCCCchhc-------cCCCCCCE
Q 002435 150 GQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVT---ISSPIPHSL-------ANLSSLTL 219 (922)
Q Consensus 150 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~---~~~~~~~~l-------~~l~~L~~ 219 (922)
..++..+..+++|++|+|++|.+..... ..++..+..+++|++|++++|. +.+.+|..+ ..+++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHH---HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 3467778888999999999987532211 2244456788888888888864 444555554 67788888
Q ss_pred EeccCccCCc----cCccccCCCCCCCEEeCcCCCCCCCccccc----CCC---------CCCcEEEcccCCCC-CCch-
Q 002435 220 LSLSGCELRG----RIPSLLGNLTKLMYLDLSFNNLLGELPTSI----GNL---------DCLKRLDISWNELS-GELP- 280 (922)
Q Consensus 220 L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~- 280 (922)
|+|++|.+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|.++ +.++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 8888888876 466677788888888888888764433333 333 78888888888876 3444
Q ss_pred --hhhhCCCCCCEEEccCCCCCC-----CCcccccCCCCCcEEEeeccCCC----CcccccccCCCCCceEecCCCccCc
Q 002435 281 --ASIGNLASLEQLELSLNRFRG-----KTPHSMGNFTRLYWLSLASNDFS----GELPASFGNLRSLEGLDISECKFSS 349 (922)
Q Consensus 281 --~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~ 349 (922)
..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 456677888888888887762 22336667778888888888775 4566677777788888888887775
Q ss_pred c----CchhhcC--CCCccEEEccCCCCcC----ccchhhhhhccCCcceEeCcCccccccc
Q 002435 350 Q----IPSSLRN--LAQLKFLEFSHNNFSG----PIDLDMFLVNFKHLEHLSLSSNRLSLFT 401 (922)
Q Consensus 350 ~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 401 (922)
. ++..+.. +++|+.|++++|.+++ .++...+ .++++|++|++++|.+++..
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence 4 4555533 7777778887777765 2433322 45677777777777776554
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3e-21 Score=200.35 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=170.0
Q ss_pred cCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc-ccCCCcccccCCCCccEEecCC-CcccccCCc
Q 002435 520 KIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK-FCGSIPQTFLSGRSLMMIDLSD-NLLQGRIPR 597 (922)
Q Consensus 520 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~ 597 (922)
.+|. + .++|++|++++|++++..+..|..++ +|++|++++|+ +++..+..|..+++|++|++++ |++++..+.
T Consensus 25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCC-C---CCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 4555 2 34789999999999987777888887 79999999997 8877777899999999999998 999988888
Q ss_pred cccCCCCCcEEECCCCcCccCcchhhcCCCCCC---EEEcCCC-cccccCCCCCCCCCCCCcc-EEEccCCcCCCCCChh
Q 002435 598 SLVNCSSLKFLDLGNNQISGTFPSWLGTLRELN---VLILKSN-KLHGMIREPNTGCGFPELR-IIDLSNNRFTGKLPSK 672 (922)
Q Consensus 598 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~ 672 (922)
.|.++++|++|++++|++++ +|. |..+++|+ +|++++| ++++..+..+ .++++|+ .|++++|+++ .+|..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHh
Confidence 99999999999999999997 555 88888888 9999999 8888765544 6789999 9999999987 66643
Q ss_pred hhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEecccc-ccccCcccccc
Q 002435 673 YFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNR-FDGEIPTSIAN 751 (922)
Q Consensus 673 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~g~ip~~~~~ 751 (922)
.|. ...|+.|+|++|+ +++..+..|..
T Consensus 175 ~~~----------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 175 AFN----------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp TTT----------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTT
T ss_pred hcC----------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhc
Confidence 221 1358899999995 99777888999
Q ss_pred c-CCCCEEeCCCccccccCCccccCCCCCCEEeCCCCc
Q 002435 752 L-KGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNK 788 (922)
Q Consensus 752 l-~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 788 (922)
+ ++|+.|||++|++++..+. .+++|+.|+++++.
T Consensus 203 l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9 9999999999999965444 67889999999873
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.9e-20 Score=201.94 Aligned_cols=210 Identities=21% Similarity=0.293 Sum_probs=153.1
Q ss_pred eEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435 534 ILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613 (922)
Q Consensus 534 ~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 613 (922)
.+.+..+.+++.+ ....+. +|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~-~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCcee--cHHHcC-CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 3445555555432 233455 57777777777764 33 46677778888888887775544 777788888888888
Q ss_pred cCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccccccc
Q 002435 614 QISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEG 693 (922)
Q Consensus 614 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~ 693 (922)
++++. ..+..+++|++|++++|++++..+ ...+++|+.|++++|++++..+ +..
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~----------------- 149 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAG----------------- 149 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGG-----------------
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccC-----------------
Confidence 87754 357778888888888888776532 3567888888888888764221 110
Q ss_pred ccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccc
Q 002435 694 MIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCL 773 (922)
Q Consensus 694 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l 773 (922)
.+.|+.|+|++|++++..+ +..+++|+.|+|++|++++..+ +
T Consensus 150 ----------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 191 (308)
T 1h6u_A 150 ----------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L 191 (308)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred ----------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--h
Confidence 2457888888888886444 8889999999999999987654 8
Q ss_pred cCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCccccC
Q 002435 774 GNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNLTGP 816 (922)
Q Consensus 774 ~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~lsg~ 816 (922)
..+++|+.|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 889999999999999998764 88999999999999999863
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.8e-20 Score=194.56 Aligned_cols=186 Identities=22% Similarity=0.212 Sum_probs=163.2
Q ss_pred CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565 (922)
Q Consensus 486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N 565 (922)
...++++++.++..+...++.++.|++++|.+++..+..+.. +++|++|++++|.+++..+..|..++ +|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCC
Confidence 356777777777666666788999999999999877766666 89999999999999998888899888 7999999999
Q ss_pred cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCC
Q 002435 566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIRE 645 (922)
Q Consensus 566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 645 (922)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99988888999999999999999999988888899999999999999999988888999999999999999999988765
Q ss_pred CCCCCCCCCccEEEccCCcCCCC-CChhhhh
Q 002435 646 PNTGCGFPELRIIDLSNNRFTGK-LPSKYFQ 675 (922)
Q Consensus 646 ~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~ 675 (922)
.+ ..+++|+.|++++|+++|. ....++.
T Consensus 174 ~~--~~l~~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 174 AF--DRLGKLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp TT--TTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred HH--hCCCCCCEEEeeCCceeCCccccHHHH
Confidence 54 6789999999999999987 4444433
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.8e-22 Score=218.04 Aligned_cols=199 Identities=22% Similarity=0.301 Sum_probs=105.4
Q ss_pred CCCeeeCCCCCCCCCCCCccccCC--CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhc
Q 002435 112 HLEWLDLAFNYFICSEIPPEIINL--SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK 189 (922)
Q Consensus 112 ~L~~L~Ls~n~~~~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~ 189 (922)
.++.++++++.+. |..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+. ...++..+..
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~------~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE------VSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC------HHHHHHHHTT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC------HHHHHHHHhh
Confidence 3667777777653 4455555 6777777777777655444 556777777777777521 1124455566
Q ss_pred CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCc-cCCcc-CccccCCCCCCCEEeCcCC-CCCCC-cccccCCCC-C
Q 002435 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGC-ELRGR-IPSLLGNLTKLMYLDLSFN-NLLGE-LPTSIGNLD-C 264 (922)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~ 264 (922)
+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 666666666666655555555555666666666655 34432 3444445555555555555 44432 334444455 5
Q ss_pred CcEEEcccC--CCC-CCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEeecc
Q 002435 265 LKRLDISWN--ELS-GELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTRLYWLSLASN 321 (922)
Q Consensus 265 L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 321 (922)
|++|++++| .++ +.++..+.++++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 555555555 233 2334444444444444444444 33333333333333333333333
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=3.7e-22 Score=221.02 Aligned_cols=252 Identities=19% Similarity=0.165 Sum_probs=116.8
Q ss_pred cCCCcCCCCCchhccCCCCCCEEeccCccCCccCc----cccCCCC-CCCEEeCcCCCCCCCcccccCCC-----CCCcE
Q 002435 198 LGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIP----SLLGNLT-KLMYLDLSFNNLLGELPTSIGNL-----DCLKR 267 (922)
Q Consensus 198 L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~ 267 (922)
++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 33344444444444433444444444444443333 3344444 44455554444444433333332 44555
Q ss_pred EEcccCCCCCCchhhh----hCC-CCCCEEEccCCCCCCCCccccc----C-CCCCcEEEeeccCCCCc----ccccccC
Q 002435 268 LDISWNELSGELPASI----GNL-ASLEQLELSLNRFRGKTPHSMG----N-FTRLYWLSLASNDFSGE----LPASFGN 333 (922)
Q Consensus 268 L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~----~p~~l~~ 333 (922)
|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++. ++..+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 5555555444333322 222 4555555555555444333222 2 23555555555555432 2222333
Q ss_pred CC-CCceEecCCCccCccCchh----hcCC-CCccEEEccCCCCcCccch--hhhhhc-cCCcceEeCcCcccccccc--
Q 002435 334 LR-SLEGLDISECKFSSQIPSS----LRNL-AQLKFLEFSHNNFSGPIDL--DMFLVN-FKHLEHLSLSSNRLSLFTK-- 402 (922)
Q Consensus 334 l~-~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~-- 402 (922)
++ +|++|++++|++++..+.. +..+ ++|++|++++|.+.+.... ...+.. .++|++|++++|.++....
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 33 5666666666655444432 2233 3566666666655431110 001112 3456666666666555433
Q ss_pred --ccccCCCCccEEEecCCCCCC--------CcccccCCCCccEEECcCCCCCCCCC
Q 002435 403 --AIFNTSQKFNFVGLRSCNLNE--------FPNFLKNQHYLEVLDLSCNKIHGKVP 449 (922)
Q Consensus 403 --~~~~~~~~L~~L~L~~~~l~~--------lp~~l~~~~~L~~L~Ls~n~l~~~~p 449 (922)
..+..+++|+.|++++|.+.. ++..+..+++|++||+++|++.+..+
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 223344555555555555332 22345566677777777777765533
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.2e-20 Score=196.95 Aligned_cols=195 Identities=25% Similarity=0.335 Sum_probs=112.9
Q ss_pred ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
....+++|++|++++|.+.. +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|++..+ +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--------~- 101 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--------S- 101 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--------G-
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--------h-
Confidence 44567778888888877743 44 57777788888888877754 333 77777777777777765322 1
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
.+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC
Confidence 355566666666666665552 2 25556666666666666554322 5555556666666665554322 5555555
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (922)
++|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|.++
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 555555555553322 4555555555555555554332 444555555555555443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.7e-20 Score=212.50 Aligned_cols=190 Identities=29% Similarity=0.406 Sum_probs=130.2
Q ss_pred CccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEE
Q 002435 530 NSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLD 609 (922)
Q Consensus 530 ~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 609 (922)
.+|+.|++++|++++ +|..+. + +|++|++++|+|+ .+| ..+++|++|++++|+|++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 378888888888876 565442 3 6888888888887 455 346778888888888876 555 554 788888
Q ss_pred CCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceeccccccc
Q 002435 610 LGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELR 689 (922)
Q Consensus 610 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~ 689 (922)
|++|++++ +|. .+++|++|+|++|++++. |. .+++|+.|+|++|++++ +|. +
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l--------------- 178 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L--------------- 178 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence 88888876 444 567788888888887763 33 35677777777777764 442 1
Q ss_pred ccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccCcccccccCCC-------CEEeCCC
Q 002435 690 YMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGL-------QVLSLAN 762 (922)
Q Consensus 690 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~ 762 (922)
.+.|+.|+|++|+|+ .+|. |.. +| +.|+|++
T Consensus 179 --------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 179 --------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp --------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred --------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 023667777777777 5565 554 56 7777777
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCC
Q 002435 763 NSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTF 802 (922)
Q Consensus 763 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~ 802 (922)
|+|+ .+|..+..+++|+.|+|++|.|++.+|..+..++.
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 7777 36666667777777777777777777777666543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3e-20 Score=204.50 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=157.5
Q ss_pred eeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCc-ccccCCCCccE-EecC
Q 002435 510 YLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIP-QTFLSGRSLMM-IDLS 587 (922)
Q Consensus 510 L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls 587 (922)
++.++++++ .+|..+. +++++|+|++|+|+...+..|.+++ +|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 14 v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 344444444 4555442 3677777777777755555677776 68888888887765444 46677777664 5566
Q ss_pred CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCC-CcccccCCCCCCCCCC-CCccEEEccCCcC
Q 002435 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS-NKLHGMIREPNTGCGF-PELRIIDLSNNRF 665 (922)
Q Consensus 588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l 665 (922)
+|+++...|+.|..+++|++|++++|++++..+..+....++..|++.+ |++....+..+ ..+ ..++.|++++|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccc
Confidence 7788877777888888888888888888777666666677777777755 45555433332 223 4577888888887
Q ss_pred CCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeeeeecccccccccccccceEEEeccccccccC
Q 002435 666 TGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTMSNKGQMMSYDKVPNFLTGVILSSNRFDGEI 745 (922)
Q Consensus 666 ~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 745 (922)
+ .+|...|. ...++.|++++|+..+.+
T Consensus 167 ~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 167 Q-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp C-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCCC
T ss_pred c-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccCC
Confidence 6 34433221 124677888754433355
Q ss_pred c-ccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 002435 746 P-TSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNN 812 (922)
Q Consensus 746 p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~ 812 (922)
| ..|..+++|++|||++|+|+...+..|.+| +.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCCCCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred CHHHhccCcccchhhcCCCCcCccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 5 567889999999999999987666555544 444444443333556 37888999999988764
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=9.2e-20 Score=184.71 Aligned_cols=134 Identities=27% Similarity=0.241 Sum_probs=68.1
Q ss_pred ccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEEC
Q 002435 531 SLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDL 610 (922)
Q Consensus 531 ~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 610 (922)
+|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 455555555555544444444444 4555555555555444444555555555555555555444444555555555555
Q ss_pred CCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435 611 GNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 611 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 667 (922)
++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|++.|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence 5555555444445555555555555555554433222 334555555555554443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.8e-19 Score=193.64 Aligned_cols=238 Identities=21% Similarity=0.155 Sum_probs=142.0
Q ss_pred EEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcc-cccCCCCCCcE-EEccc
Q 002435 195 ELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELP-TSIGNLDCLKR-LDISW 272 (922)
Q Consensus 195 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~L~~ 272 (922)
+++.++++++. +|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34444444442 34433 2467777777777775544567777777777777777765544 45677777664 45556
Q ss_pred CCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeecc-CCCCcccccccCCC-CCceEecCCCccCcc
Q 002435 273 NELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASN-DFSGELPASFGNLR-SLEGLDISECKFSSQ 350 (922)
Q Consensus 273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ 350 (922)
|+++...|..|..+++|++|++++|++....+..+....++..+++.++ .+....+..|..+. .++.|++++|+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 7777655667777777777777777777666666666666777777653 44433334455443 56777777777764
Q ss_pred CchhhcCCCCccEEEccCCCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecC-CCCCCCccccc
Q 002435 351 IPSSLRNLAQLKFLEFSHNNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRS-CNLNEFPNFLK 429 (922)
Q Consensus 351 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-~~l~~lp~~l~ 429 (922)
++.......+|+++++.+++..+.++...| ..+++|++|++++|+++.++...|.. |+.|.+.+ +.+..+|. +.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCCC-TT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCCC-ch
Confidence 333344455677777765444445665554 56677777777777776666544333 33333222 23344442 44
Q ss_pred CCCCccEEECcC
Q 002435 430 NQHYLEVLDLSC 441 (922)
Q Consensus 430 ~~~~L~~L~Ls~ 441 (922)
.+++|+.+++++
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 455555555543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.6e-19 Score=207.07 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCCCc-----cccce-EecCCCCcEEEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCcccc
Q 002435 60 TASWKPEEANIDCC-----LWDGV-ECNENTGHVIKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEII 133 (922)
Q Consensus 60 ~~~w~~~~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~ 133 (922)
+.+|.. +.++| .|.|+ .|.. ++++.|+|+++.+++ ++. .+ +++|++|+|++|.+. .+| .
T Consensus 33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~--~ip---~ 97 (571)
T 3cvr_A 33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI--SLP---E 97 (571)
T ss_dssp HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS--CCC---C
T ss_pred HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc--ccc---c
Confidence 345644 34556 79999 7863 478999999999988 333 34 378999999999886 367 4
Q ss_pred CCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccC
Q 002435 134 NLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLAN 213 (922)
Q Consensus 134 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 213 (922)
.+++|++|+|++|.+++ +|. +.+ +|++|++++|+++. +|. .+++|++|++++|.+++ +|. .
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--------lp~---~l~~L~~L~Ls~N~l~~-lp~---~ 158 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--------LPE---LPALLEYINADNNQLTM-LPE---L 158 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--------CCC---CCTTCCEEECCSSCCSC-CCC---C
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--------CCC---cCccccEEeCCCCccCc-CCC---c
Confidence 57889999999998866 776 654 88888888887533 222 45666666666666655 333 3
Q ss_pred CCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC-------cEEEcccCCCCCCchhhhhCC
Q 002435 214 LSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL-------KRLDISWNELSGELPASIGNL 286 (922)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l 286 (922)
+++|++|++++|.+++ +|. +. ++|++|+|++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 4566666666666654 444 43 55666666666555 3333 332 34 44455544444 344444444
Q ss_pred CCCCEEEccCCCCCCCCcccc
Q 002435 287 ASLEQLELSLNRFRGKTPHSM 307 (922)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~~~l 307 (922)
++|+.|+|++|.+++..|..+
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHH
Confidence 444444444444444444333
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=177.00 Aligned_cols=175 Identities=22% Similarity=0.190 Sum_probs=154.2
Q ss_pred ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 566 (922)
..++++++.++..+...+++++.|++++|.+++. +...+..+++|++|++++|++++..+..|..++ +|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCc
Confidence 5677777777777767788999999999999854 444444489999999999999987777788887 79999999999
Q ss_pred ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCC
Q 002435 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREP 646 (922)
Q Consensus 567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 646 (922)
+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 998888889999999999999999998888889999999999999999998888889999999999999998764
Q ss_pred CCCCCCCCccEEEccCCcCCCCCChh
Q 002435 647 NTGCGFPELRIIDLSNNRFTGKLPSK 672 (922)
Q Consensus 647 ~~~~~l~~L~~LdLs~N~l~g~ip~~ 672 (922)
.+++|+.|+++.|+++|.+|..
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeecc
Confidence 4678999999999999999964
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=177.42 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=135.1
Q ss_pred ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCC-chhhhccCcccEEEcCCCcccCCCcccccCCCCccEEec
Q 002435 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLP-QCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDL 586 (922)
Q Consensus 508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 586 (922)
+.+++++|.++ .+|..+. ..+++|++++|++++..+ ..|..++ +|++|++++|+|++..+..|..+++|++|+|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 34555555555 3555443 356888888888887754 4577777 7999999999999888888999999999999
Q ss_pred CCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435 587 SDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 587 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 666 (922)
++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+ ..+++|+.|++++|++.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence 9999998888889999999999999999999889999999999999999999999877665 67899999999999999
Q ss_pred CCCChhhhhcc
Q 002435 667 GKLPSKYFQCW 677 (922)
Q Consensus 667 g~ip~~~~~~~ 677 (922)
|.++..++..|
T Consensus 167 c~c~l~~l~~~ 177 (220)
T 2v70_A 167 CNCYLAWLGEW 177 (220)
T ss_dssp CSGGGHHHHHH
T ss_pred CCCchHHHHHH
Confidence 99987776544
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.5e-18 Score=175.40 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=136.7
Q ss_pred eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588 (922)
Q Consensus 509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 588 (922)
.++++++.++ .+|..+. ++++.|++++|++++..+..|..++ +|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3444444444 4554442 4788999999999887777888887 799999999999988899999999999999999
Q ss_pred CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCC
Q 002435 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGK 668 (922)
Q Consensus 589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 668 (922)
|+|+...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence 99998777788999999999999999999999999999999999999999998876544 6689999999999999998
Q ss_pred CChhhhhcc
Q 002435 669 LPSKYFQCW 677 (922)
Q Consensus 669 ip~~~~~~~ 677 (922)
+...|+..|
T Consensus 168 c~l~~l~~~ 176 (220)
T 2v9t_B 168 CHLKWLADY 176 (220)
T ss_dssp GGGHHHHHH
T ss_pred CccHHHHHH
Confidence 887776543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=171.16 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=140.6
Q ss_pred ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 566 (922)
..+++++|.++..+...+..++.|++++|.+++..|...+..+++|++|++++|.+++..+..|..++ +|++|+|++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence 46777788777766566778899999999999876665555599999999999999998888999988 79999999999
Q ss_pred ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642 (922)
Q Consensus 567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 642 (922)
+++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.8e-18 Score=185.54 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=72.9
Q ss_pred ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCccccc-CCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFL-SGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611 (922)
Q Consensus 533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 611 (922)
+.+++++++++. +|..+. ..++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 466777776663 454332 2466666666666655555555 56666666666666665555566666666666666
Q ss_pred CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 666 (922)
+|+|++..+..|..+++|++|+|++|++.+..+..+ .++++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC
Confidence 666665555555555555555555555555433332 33444444444444443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=177.48 Aligned_cols=173 Identities=25% Similarity=0.238 Sum_probs=93.0
Q ss_pred ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+..+ +
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~--------~- 106 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL--------S- 106 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG--------G-
T ss_pred chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC--------h-
Confidence 34566777777777776642 33 366667777777777766443 32 66666677777766654221 1
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
.+..+++|++|++++|.+++ . ..+..+++|++|++++|.+++. ..+..+++|
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~------------------------~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 158 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISD------------------------I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCC------------------------C--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhccCCCCCEEECCCCcCCC------------------------C--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence 14444444444444444443 2 2344455555555555555433 344555555
Q ss_pred cEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435 266 KRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (922)
++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 555555555553322 55555555555555555532 2 2555555666666665554
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=2.8e-17 Score=168.83 Aligned_cols=155 Identities=22% Similarity=0.201 Sum_probs=131.5
Q ss_pred ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecC
Q 002435 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587 (922)
Q Consensus 508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 587 (922)
+.++.+++.++ .+|..+ .++|++|++++|++++..|..|..++ +|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34555555544 555544 35789999999999988888888887 79999999999987777888999999999999
Q ss_pred CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCC
Q 002435 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTG 667 (922)
Q Consensus 588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 667 (922)
+|+|++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.|
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccC
Confidence 99999888888999999999999999999 678888999999999999999998765444 678999999999999999
Q ss_pred CCC
Q 002435 668 KLP 670 (922)
Q Consensus 668 ~ip 670 (922)
.++
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 886
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.3e-17 Score=193.04 Aligned_cols=189 Identities=26% Similarity=0.283 Sum_probs=122.5
Q ss_pred EEEECCCCCCCCcccCccccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEc
Q 002435 88 IKLDLSNSCLQGFINSSSGLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDL 167 (922)
Q Consensus 88 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 167 (922)
..+++..+.+.+.+ .+..+++|+.|++++|.+.. +| .++.+++|++|+|++|.+.+..| +..+++|++|+|
T Consensus 24 ~~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455555555442 45677888888888888743 33 57788888888888888865433 778888888888
Q ss_pred CCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCc
Q 002435 168 SHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLS 247 (922)
Q Consensus 168 s~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 247 (922)
++|.+..+ + .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|+|+
T Consensus 95 s~N~l~~l--------~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 95 DENKIKDL--------S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CSSCCCCC--------T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred cCCCCCCC--------h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 88875332 1 355666777777777766652 3466666677777766666644 456666666666666
Q ss_pred CCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCC
Q 002435 248 FNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGK 302 (922)
Q Consensus 248 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 302 (922)
+|.+++..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 666665544 66666666666666666642 2466666666666666666543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=5.4e-18 Score=187.20 Aligned_cols=184 Identities=23% Similarity=0.151 Sum_probs=149.2
Q ss_pred ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 566 (922)
..++++++.++..+...+..++.|++++|.+++..+..+...+++|+.|+|++|+|++..+..|..++ +|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence 46777777777766566777889999999988655544441488999999999999988888888888 79999999999
Q ss_pred ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhh---cCCCCCCEEEcCCCcccccC
Q 002435 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWL---GTLRELNVLILKSNKLHGMI 643 (922)
Q Consensus 567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~ 643 (922)
|++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..| ..+++|+.|+|++|++++..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 998888889999999999999999998889999999999999999999997666666 57899999999999998764
Q ss_pred CCCCCCCCCCC--ccEEEccCCcCCCCCChhh
Q 002435 644 REPNTGCGFPE--LRIIDLSNNRFTGKLPSKY 673 (922)
Q Consensus 644 ~~~~~~~~l~~--L~~LdLs~N~l~g~ip~~~ 673 (922)
+..+ ..++. ++.|+|++|++.|.+...+
T Consensus 180 ~~~~--~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 180 LTDL--QKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp HHHH--HHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred HHHh--hhccHhhcceEEecCCCccCCcCcHH
Confidence 3322 34555 4789999999998876443
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=5.8e-17 Score=165.26 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=138.4
Q ss_pred ceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCc
Q 002435 487 FTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNK 566 (922)
Q Consensus 487 ~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 566 (922)
..++++++.++..+...+++++.|++++|.+++..+..+.. +++|+.|+|++|++++..|..|..++ +|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSP-YKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhC-CCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCc
Confidence 56778888877776666789999999999998655544544 89999999999999999999999998 79999999999
Q ss_pred ccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435 567 FCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642 (922)
Q Consensus 567 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 642 (922)
|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9988788899999999999999999999999999999999999999999999888999999999999999998753
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=9e-17 Score=171.51 Aligned_cols=149 Identities=30% Similarity=0.383 Sum_probs=65.9
Q ss_pred ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCC
Q 002435 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLE 290 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (922)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 3444444444444444443222 44444444444444444431 2244444555555555544432 2344445555
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccCCC
Q 002435 291 QLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSHNN 370 (922)
Q Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 370 (922)
+|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCc
Confidence 555555544432 234444444444444444443222 44444444444444444431 2 24444444444444444
Q ss_pred C
Q 002435 371 F 371 (922)
Q Consensus 371 l 371 (922)
+
T Consensus 212 i 212 (291)
T 1h6t_A 212 C 212 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.4e-18 Score=208.86 Aligned_cols=230 Identities=21% Similarity=0.182 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHhhcCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEECCCCCCCCcccCcc
Q 002435 26 CHSYERSALLQFKESLTIIRKTSSYYIWDPCHPKTASWKPEEANIDCCLWDGVECNENTGHVIKLDLSNSCLQGFINSSS 105 (922)
Q Consensus 26 ~~~~~~~all~~k~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~ 105 (922)
..+.+++||+++.......... ....|... .+..+.|.++.+.. ++++.|+|.++.+.....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~--- 190 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTA-----------KKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ--- 190 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT-----------C----------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCc-----------ccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh---
Confidence 4566889999998876433221 23456442 44567899988864 679999999888776421
Q ss_pred ccccCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhH
Q 002435 106 GLFKLVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGN 185 (922)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 185 (922)
. .|+.++|+.+.+.+ ++++.|.+. ..|..+..+++|++|+|++|.+. .+|.
T Consensus 191 ~-----~l~~l~Ls~~~i~~---------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--------~l~~ 241 (727)
T 4b8c_D 191 A-----LLQHKKLSQYSIDE---------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--------NISA 241 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS--------CCCG
T ss_pred h-----HhhcCccCcccccC---------------cccccccee-cChhhhccCCCCcEEECCCCCCC--------CCCh
Confidence 2 33444455444321 122222221 22333444444444444444431 1222
Q ss_pred HHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCC
Q 002435 186 LVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCL 265 (922)
Q Consensus 186 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 265 (922)
.+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc
Confidence 2334444444444444455 45666777777777777777777 56777777777777777777776 556667777777
Q ss_pred cEEEcccCCCCCCchhhhhCCCC-CCEEEccCCCCCCCCcc
Q 002435 266 KRLDISWNELSGELPASIGNLAS-LEQLELSLNRFRGKTPH 305 (922)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 305 (922)
++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77777777777777766654322 22356777777766664
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.3e-17 Score=171.98 Aligned_cols=168 Identities=24% Similarity=0.322 Sum_probs=98.7
Q ss_pred cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcC
Q 002435 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILK 635 (922)
Q Consensus 556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 635 (922)
.+..+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3555556666655332 35556666666666666653 23 46666666666666666665444 5566666666666
Q ss_pred CCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccccceecccccccccccccccchhccccccceeeeeeee
Q 002435 636 SNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWNAMQVVNTSELRYMEGMIYPFALVSYAALGIYDYSLTM 715 (922)
Q Consensus 636 ~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 715 (922)
+|++++..+. .. ++|+.
T Consensus 94 ~N~l~~l~~~----~~-~~L~~---------------------------------------------------------- 110 (263)
T 1xeu_A 94 RNRLKNLNGI----PS-ACLSR---------------------------------------------------------- 110 (263)
T ss_dssp SSCCSCCTTC----CC-SSCCE----------------------------------------------------------
T ss_pred CCccCCcCcc----cc-CcccE----------------------------------------------------------
Confidence 6665543111 01 34444
Q ss_pred eecccccccccccccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcc
Q 002435 716 SNKGQMMSYDKVPNFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQ 795 (922)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~ 795 (922)
|+|++|++++. | .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. .
T Consensus 111 ------------------L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 111 ------------------LFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp ------------------EECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred ------------------EEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 44444444432 2 355666666777777776654 2 466677777777777777665 5
Q ss_pred cccCCCCCCeEeccCCccccC
Q 002435 796 QLVDLTFLEFFNVSNNNLTGP 816 (922)
Q Consensus 796 ~l~~L~~L~~L~ls~N~lsg~ 816 (922)
.+..++.|+.|++++|++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 566677777777777777655
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.3e-17 Score=188.35 Aligned_cols=191 Identities=23% Similarity=0.218 Sum_probs=98.0
Q ss_pred CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhc
Q 002435 110 LVHLEWLDLAFNYFICSEIPPEIINLSRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKK 189 (922)
Q Consensus 110 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~ 189 (922)
+..+..++++.+.+... ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|++..+ +. +..
T Consensus 20 l~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~--------~~-l~~ 85 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--------KP-LTN 85 (605)
T ss_dssp HHHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC--------GG-GGG
T ss_pred HHHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC--------hh-hcc
Confidence 34455566666655321 224566777777777777633 33 466677777777777764322 11 455
Q ss_pred CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEE
Q 002435 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269 (922)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 269 (922)
+++|++|+|++|.+.+. ..+..+++|++|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 55555555555555541 2455555555555555555432 2344555555555555555433 3444455555555
Q ss_pred cccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435 270 ISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324 (922)
Q Consensus 270 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (922)
|++|.+++..| +..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 55555543333 44445555555555544432 23444444444444444443
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.8e-19 Score=209.68 Aligned_cols=86 Identities=31% Similarity=0.429 Sum_probs=53.0
Q ss_pred cceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccC-cccccCCCCCCeEec
Q 002435 730 FLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQI-PQQLVDLTFLEFFNV 808 (922)
Q Consensus 730 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~L~l 808 (922)
.|+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.+ |..+.++++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 3555566666665 556666666666666666666665 44 5666666666666666666655 666666666666666
Q ss_pred cCCccccCCC
Q 002435 809 SNNNLTGPIP 818 (922)
Q Consensus 809 s~N~lsg~iP 818 (922)
++|++++.+|
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 6666666555
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2.6e-16 Score=161.58 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=139.3
Q ss_pred CceEeccCccccCCCCCCCCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCC
Q 002435 486 GFTLDLSYNYLQGPLPVPPPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHN 565 (922)
Q Consensus 486 l~~L~ls~n~l~~~~~~~~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N 565 (922)
...++++++.++..+...+++++.|++++|.+++..|..+.. +++|++|+|++|+++...+..|..++ +|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS-LINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhC-ccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCC
Confidence 457888888888777777899999999999999877776666 89999999999999877777788888 7999999999
Q ss_pred cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435 566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642 (922)
Q Consensus 566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 642 (922)
+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999888888999999999999999999 6788999999999999999999988888899999999999999999865
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.6e-19 Score=208.40 Aligned_cols=122 Identities=29% Similarity=0.358 Sum_probs=84.0
Q ss_pred CCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEcc
Q 002435 216 SLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELS 295 (922)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 295 (922)
.|++|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|.+++ +| .+..+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46777777777764 454 777777777777777776 566677777777777777777774 55 67777777777777
Q ss_pred CCCCCCCC-cccccCCCCCcEEEeeccCCCCcccc---cccCCCCCceEec
Q 002435 296 LNRFRGKT-PHSMGNFTRLYWLSLASNDFSGELPA---SFGNLRSLEGLDI 342 (922)
Q Consensus 296 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L 342 (922)
+|.+++.. |..++.+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777665 77777777777777777777654332 1233677777754
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6e-17 Score=161.37 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=82.5
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV 808 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l 808 (922)
+.|+.|+|++|+|++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|+|++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 45778888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCC
Q 002435 809 SNNNLTGPIPQ 819 (922)
Q Consensus 809 s~N~lsg~iP~ 819 (922)
++|+++|..|.
T Consensus 134 ~~N~l~c~c~l 144 (192)
T 1w8a_A 134 ASNPFNCNCHL 144 (192)
T ss_dssp TTCCBCCSGGG
T ss_pred CCCCccCcCcc
Confidence 99999988774
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=159.43 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=54.3
Q ss_pred ccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCCCchhhhhCCCCC
Q 002435 211 LANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSGELPASIGNLASL 289 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 289 (922)
+..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence 4444445555555555444444445555555555555555554444455555555555555554 33 333 35555555
Q ss_pred CEEEccCCCCCCCCcccccCCCCCcEEEeeccCCC
Q 002435 290 EQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFS 324 (922)
Q Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (922)
++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 162 ~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 162 KSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 55555555555422 4455555555555555543
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.7e-16 Score=156.56 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=120.1
Q ss_pred ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcc-cccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQ-TFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611 (922)
Q Consensus 533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 611 (922)
+.+++++|+++ .+|..+.. ++++|++++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 56665432 699999999999877764 48899999999999999999889999999999999999
Q ss_pred CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 002435 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQC 676 (922)
Q Consensus 612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 676 (922)
+|+|++..|..|..+++|++|+|++|++++..|..+ ..+++|+.|++++|+++|.++..++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 999999988889999999999999999999887765 678999999999999999998776654
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3e-16 Score=157.09 Aligned_cols=151 Identities=14% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEE
Q 002435 190 LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLD 269 (922)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 269 (922)
+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444444444444442 23 4566666777777766554 223566677777777777777665666666677777777
Q ss_pred cccCCCCCCchhhhhCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC
Q 002435 270 ISWNELSGELPASIGNLASLEQLELSLNR-FRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS 348 (922)
Q Consensus 270 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (922)
+++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 77777666566666666666666666665 43 223 45555555555555555543 22 3445555555555555443
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.1e-17 Score=169.03 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=96.5
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+.++..+++++|.+++.. .+..+. +|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 446778889999888543 567777 79999999999985 44 68889999999999999997655 8999999999
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCC
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 666 (922)
++++|++++..+ +.. ++|++|++++|++++.. ....+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence 999999987433 223 89999999999998752 1245666666666666654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.5e-17 Score=199.85 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=83.2
Q ss_pred CCCCceeeccCCcccCcCChhhhhcCCccceEEccCccCCC---------CCCchhhhccCcccEEEcCCCcccCCCccc
Q 002435 504 PPQTKHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSG---------LLPQCLDNFSDHLSILDLQHNKFCGSIPQT 574 (922)
Q Consensus 504 ~~~l~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~---------~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~ 574 (922)
.+.++.+.+..|.+.. ++. ..++.++|+.|.|.+ ..|..+..+. .|+.|+|++|.+. .+|..
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~ 242 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ-LWHALDLSNLQIF-NISAN 242 (727)
T ss_dssp ---------------------------------------------------------CCC-CCCEEECTTSCCS-CCCGG
T ss_pred CCccceEEeeCCCCCc-chh------hHhhcCccCcccccCccccccceecChhhhccCC-CCcEEECCCCCCC-CCChh
Confidence 3456777777777764 232 234445555554443 2355566666 6778888888777 55555
Q ss_pred ccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCC
Q 002435 575 FLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPE 654 (922)
Q Consensus 575 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 654 (922)
+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++ .+|..+ ..+++
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~ 317 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCN 317 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTT
T ss_pred hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCC
Confidence 667777888888888777 66777777788888888888877 55777777778888888887776 344443 56777
Q ss_pred ccEEEccCCcCCCCCChh
Q 002435 655 LRIIDLSNNRFTGKLPSK 672 (922)
Q Consensus 655 L~~LdLs~N~l~g~ip~~ 672 (922)
|+.|+|++|++++.+|..
T Consensus 318 L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 318 LQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CCCEECTTSCCCSHHHHH
T ss_pred ccEEeCCCCccCCCChHH
Confidence 777777777777666643
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=150.41 Aligned_cols=139 Identities=22% Similarity=0.320 Sum_probs=119.5
Q ss_pred ceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCC
Q 002435 533 EILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGN 612 (922)
Q Consensus 533 ~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 612 (922)
+.+++++|.++ .+|..+. ++|++|++++|+|+ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57888888887 4565442 37999999999998 6678899999999999999999988888999999999999999
Q ss_pred CcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435 613 NQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN 678 (922)
Q Consensus 613 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~ 678 (922)
|+|++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.|.+...|+..|-
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~~ 151 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDWV 151 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHHH
Confidence 99999888899999999999999999997755444 67899999999999999998888776553
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=4.1e-15 Score=161.89 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=49.0
Q ss_pred cccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCc-EEECCCCcCccCcchhhcCCCCCCEEEc
Q 002435 556 HLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLK-FLDLGNNQISGTFPSWLGTLRELNVLIL 634 (922)
Q Consensus 556 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 634 (922)
+|+.+++++|+++.+.+.+|.++.+|+.|+|.+| ++.+.+.+|.+|++|+ .+++.+ +++.+.+.+|.+|++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 4555555555554444444555555555555554 4444444555555555 555554 444444455555555555555
Q ss_pred CCCcccccCCCCCCCCCCCCccEEE
Q 002435 635 KSNKLHGMIREPNTGCGFPELRIID 659 (922)
Q Consensus 635 ~~N~l~~~~~~~~~~~~l~~L~~Ld 659 (922)
++|++..+.+..+ .++++|+.|+
T Consensus 305 ~~n~i~~I~~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELF--GNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTT--CTTCCCCEEE
T ss_pred CCCccCccchhhh--cCCcchhhhc
Confidence 5555544433222 3445555443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.4e-14 Score=142.31 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=114.3
Q ss_pred cceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECC
Q 002435 532 LEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLG 611 (922)
Q Consensus 532 L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 611 (922)
.+.+++++|+++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 5778888888874 454332 379999999999998877788899999999999999998888888999999999999
Q ss_pred CCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435 612 NNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670 (922)
Q Consensus 612 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 670 (922)
+|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++.|.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 999998888889999999999999999997655433 568999999999999999887
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.1e-14 Score=141.61 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=94.7
Q ss_pred CccceEEccCccCC-CCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 530 NSLEILDLSYNNLS-GLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 530 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777776 56666666666 677777777777755 567777777788888877777677777777778888
Q ss_pred ECCCCcCccCc-chhhcCCCCCCEEEcCCCcccccCCC-CCCCCCCCCccEEEccCCcCC
Q 002435 609 DLGNNQISGTF-PSWLGTLRELNVLILKSNKLHGMIRE-PNTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 609 ~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~LdLs~N~l~ 666 (922)
++++|++++.. +..+..+++|++|++++|++++..+. ...+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888777643 26677777788888888877765430 012255777888888877765
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.5e-14 Score=140.72 Aligned_cols=132 Identities=24% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 215 SSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666655 45555556666666666666666544 4556666666666666666655555555566666666
Q ss_pred ccCCCCCCCCc-ccccCCCCCcEEEeeccCCCCccc---ccccCCCCCceEecCCCccC
Q 002435 294 LSLNRFRGKTP-HSMGNFTRLYWLSLASNDFSGELP---ASFGNLRSLEGLDISECKFS 348 (922)
Q Consensus 294 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~ 348 (922)
+++|.+++... ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666554321 344455555555555555443322 23444455555555544443
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=5e-15 Score=161.23 Aligned_cols=292 Identities=14% Similarity=0.086 Sum_probs=168.3
Q ss_pred CcCchhhcC--CCCCCEEEcCCCCCCCcccccCCChhHHHhc-CCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCcc
Q 002435 150 GQIPSEILE--LSNLVSLDLSHNSYYNLIELKEPNLGNLVKK-LTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCE 226 (922)
Q Consensus 150 ~~~p~~l~~--l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 226 (922)
|.++..+.. +.+++.|.++++- . ...+ ..+.. +++|++|+|++|++..... .-+.++.++.+.+..+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i-----~--~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~-~~~~~~~~~~~~~~~~~ 83 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKL-----N--AEDF-RHLRDEFPSLKVLDISNAEIKMYSG-KAGTYPNGKFYIYMANF 83 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEE-----C--HHHH-HHHHHSCTTCCEEEEEEEEECCEEE-SSSSSGGGCCEEECTTE
T ss_pred CcHHhhccchhhCceeEEEEeccc-----c--HHHH-HHHHHhhccCeEEecCcceeEEecC-ccccccccccccccccc
Confidence 444444443 6788999998752 1 0112 23334 8889999999998872100 01122224445555543
Q ss_pred CCccCccccCC--------CCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCC-
Q 002435 227 LRGRIPSLLGN--------LTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLN- 297 (922)
Q Consensus 227 l~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n- 297 (922)
+. +.+|.+ +++|+.|+|.+ .++...+.+|.+|++|+.|++.+|.+....+.+|..+.++..+.+..+
T Consensus 84 I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~ 159 (329)
T 3sb4_A 84 VP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159 (329)
T ss_dssp EC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred cC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence 22 244555 88888888888 777666678888888999998888887666677777777777766552
Q ss_pred ---CCCCCCcccccCCCCCc-EEEeeccCCCCccccccc----CCCCCceEecCCCccCccCchhh-cCCCCccEEEccC
Q 002435 298 ---RFRGKTPHSMGNFTRLY-WLSLASNDFSGELPASFG----NLRSLEGLDISECKFSSQIPSSL-RNLAQLKFLEFSH 368 (922)
Q Consensus 298 ---~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~ 368 (922)
.........|..+..|+ .+.+.... .++..+. ...+++.+.+.++-.. .....+ ..+++|+.+++++
T Consensus 160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 160 AYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp HHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTT
T ss_pred hhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCC
Confidence 12223334455556665 34443221 1221111 1234444444433111 111111 2256666666666
Q ss_pred CCCcCccchhhhhhccCCcceEeCcCccccccccccccCCCCcc-EEEecCCCCCCCc-ccccCCCCccEEECcCCCCCC
Q 002435 369 NNFSGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFN-FVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNKIHG 446 (922)
Q Consensus 369 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~-~L~L~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~ 446 (922)
|+++ .++...| .++++|+.+++.+| ++.+...+|..+.+|+ .+++.+ .++.++ ..+.+|++|+.++++.|.++.
T Consensus 236 n~i~-~I~~~aF-~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 236 TNAT-TIPDFTF-AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp BCCC-EECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCcc-eecHhhh-hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 6655 4554444 56666666666665 6666666666666676 666666 555554 356667777777777776665
Q ss_pred CCCccccccCCCCccEEE
Q 002435 447 KVPKWLIEPSMQNFSYLN 464 (922)
Q Consensus 447 ~~p~~~~~~~l~~L~~L~ 464 (922)
..+..|. .+++|+.++
T Consensus 312 I~~~aF~--~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFG--NGVPSKLIY 327 (329)
T ss_dssp ECTTTTC--TTCCCCEEE
T ss_pred cchhhhc--CCcchhhhc
Confidence 5555555 666666664
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.6e-14 Score=141.11 Aligned_cols=128 Identities=30% Similarity=0.347 Sum_probs=106.7
Q ss_pred eeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCC
Q 002435 509 HYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSD 588 (922)
Q Consensus 509 ~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 588 (922)
.+++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+. +|++|++++|+|++..+..|..+++|++|+|++
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4455555554 4555442 47888999999887 6778888887 799999999999988888899999999999999
Q ss_pred CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCccccc
Q 002435 589 NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGM 642 (922)
Q Consensus 589 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 642 (922)
|+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999988888899999999999999999987777899999999999999998753
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.5e-14 Score=137.63 Aligned_cols=108 Identities=24% Similarity=0.318 Sum_probs=59.6
Q ss_pred CCCCEEeccCccCC-ccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEE
Q 002435 215 SSLTLLSLSGCELR-GRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLE 293 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (922)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555666666666666666544 4555566666666666666654555555566666666
Q ss_pred ccCCCCCCC-CcccccCCCCCcEEEeeccCCC
Q 002435 294 LSLNRFRGK-TPHSMGNFTRLYWLSLASNDFS 324 (922)
Q Consensus 294 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 324 (922)
+++|.+++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 666655542 1233444444444444444444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=7.2e-14 Score=137.10 Aligned_cols=131 Identities=24% Similarity=0.253 Sum_probs=103.8
Q ss_pred ceeeccCCcccCcCChhhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecC
Q 002435 508 KHYLVSNNSLTGKIPFWICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLS 587 (922)
Q Consensus 508 ~~L~ls~n~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 587 (922)
+.++++++.++ .+|..+ .++|+.|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 34445555544 344433 34788888888888876666677776 79999999999987777778889999999999
Q ss_pred CCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccC
Q 002435 588 DNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMI 643 (922)
Q Consensus 588 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 643 (922)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999887778888999999999999998777777888999999999999887653
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3.1e-14 Score=135.36 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=86.2
Q ss_pred CCCCCEEeCcCCCCC-CCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 002435 238 LTKLMYLDLSFNNLL-GELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWL 316 (922)
Q Consensus 238 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (922)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367788888888877 66777777778888888888877754 556777777777777777776666666666777777
Q ss_pred EeeccCCCCc-ccccccCCCCCceEecCCCccCccCc---hhhcCCCCccEEEcc
Q 002435 317 SLASNDFSGE-LPASFGNLRSLEGLDISECKFSSQIP---SSLRNLAQLKFLEFS 367 (922)
Q Consensus 317 ~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~ 367 (922)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777766642 23556666666666666666665433 345555555555554
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.6e-13 Score=133.35 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=85.2
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV 808 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l 808 (922)
..++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45889999999999999999999999999999999999988888999999999999999999988888999999999999
Q ss_pred cCCccccCCC
Q 002435 809 SNNNLTGPIP 818 (922)
Q Consensus 809 s~N~lsg~iP 818 (922)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999998765
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2e-15 Score=151.31 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=62.8
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCC-ccccCCCCCCEEeCCCCcCcccCccc----------c
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHIL-SCLGNLTGLESLDLSNNKFSGQIPQQ----------L 797 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~l~g~ip~~----------l 797 (922)
+.|+.|+|++|++++ +| .++.+++|+.|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 347778888888886 44 57788888888888888886443 56788888888888888888877653 7
Q ss_pred cCCCCCCeEeccCCccc
Q 002435 798 VDLTFLEFFNVSNNNLT 814 (922)
Q Consensus 798 ~~L~~L~~L~ls~N~ls 814 (922)
..++.|+.|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7888888887 56554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.8e-13 Score=129.98 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=72.1
Q ss_pred ccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCC
Q 002435 557 LSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636 (922)
Q Consensus 557 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 636 (922)
.+.+++++|+++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4455555555553 34333 25666666666666666666667777777777777777766666667777777777777
Q ss_pred CcccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435 637 NKLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670 (922)
Q Consensus 637 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 670 (922)
|++++..+..+ ..+++|+.|+|++|+++|.++
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 77776554433 567788888888888887775
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=4.8e-13 Score=130.42 Aligned_cols=90 Identities=22% Similarity=0.212 Sum_probs=83.9
Q ss_pred ccceEEEeccccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 002435 729 NFLTGVILSSNRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFNV 808 (922)
Q Consensus 729 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~l 808 (922)
..++.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|+++++|++|+|++|+|++..+..+.++++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 46889999999999999999999999999999999999988888899999999999999999888888999999999999
Q ss_pred cCCccccCCC
Q 002435 809 SNNNLTGPIP 818 (922)
Q Consensus 809 s~N~lsg~iP 818 (922)
++|++.+..+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999987654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=7.1e-12 Score=139.22 Aligned_cols=249 Identities=9% Similarity=0.100 Sum_probs=131.0
Q ss_pred hhccCCCCCCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCC
Q 002435 209 HSLANLSSLTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLAS 288 (922)
Q Consensus 209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 288 (922)
.+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+....+.+|.+|++|+.+++..|.++.....+|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 334443 4555555443 333333344442 455555553 34433344555555555555555555532222333 455
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccCccCchhhcCCCCccEEEccC
Q 002435 289 LEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFSSQIPSSLRNLAQLKFLEFSH 368 (922)
Q Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 368 (922)
|+.+.+..+ +.......|.++++|+.+.+..+ ++..-...|.+ .+|+.+.+ .+.++.....+|.++++|+.+++.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 555555532 44444455555555555555543 33222333444 45666666 2334434445566666666666665
Q ss_pred CCCc----CccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCc-ccccCCCCccEEECcCCC
Q 002435 369 NNFS----GPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFP-NFLKNQHYLEVLDLSCNK 443 (922)
Q Consensus 369 n~l~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp-~~l~~~~~L~~L~Ls~n~ 443 (922)
+.+. ..++...| .++++|+.+++. +.++.+...+|..+.+|+.+.+..+ ++.++ ..+.++ +|+.+++++|.
T Consensus 281 ~~~~~~~~~~I~~~aF-~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCL-EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SCCCCCTTCEECTTTT-TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ccccCCcccEECHHHh-hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 5442 12444444 667777777776 3466667777777777777777443 55444 355666 77777777776
Q ss_pred CCCCCCccccccCC-CCccEEEccCCcccc
Q 002435 444 IHGKVPKWLIEPSM-QNFSYLNLSHNFLIG 472 (922)
Q Consensus 444 l~~~~p~~~~~~~l-~~L~~L~L~~n~l~~ 472 (922)
+....+..|. .+ .+++.|.+..+.+..
T Consensus 357 ~~~l~~~~F~--~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 357 PPQVFEKVWY--GFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CCBCCCSSCC--CSCTTCCEEEECGGGHHH
T ss_pred Cccccccccc--CCCCCccEEEeCHHHHHH
Confidence 6544444443 34 356677776665543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3.2e-13 Score=132.31 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=103.0
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+.+|+.|++++|+++. +|. +..+.++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 6688899999998885 354 445444799999999999865 578888999999999999987766667889999999
Q ss_pred ECCCCcCccCcch--hhcCCCCCCEEEcCCCcccccCCCC--CCCCCCCCccEEEccCCcCC
Q 002435 609 DLGNNQISGTFPS--WLGTLRELNVLILKSNKLHGMIREP--NTGCGFPELRIIDLSNNRFT 666 (922)
Q Consensus 609 ~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~LdLs~N~l~ 666 (922)
++++|+++. +|. .+..+++|+.|++++|++... |.. .....+++|+.||+++|...
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999964 454 788899999999999998754 221 01256788889988888754
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.40 E-value=3.8e-12 Score=142.10 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+.+|+.+.+..+ ++.....+|.++. +|+.+++.++ ++.+-..+|.++.+|+.+++..+ ++.+...+|.+|++|+.+
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred cccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 444555544332 3322333444443 3444444322 33333344444444554444433 333334444444444444
Q ss_pred ECC
Q 002435 609 DLG 611 (922)
Q Consensus 609 ~Ls 611 (922)
++.
T Consensus 372 ~lp 374 (394)
T 4fs7_A 372 ELP 374 (394)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1e-11 Score=137.95 Aligned_cols=216 Identities=11% Similarity=0.122 Sum_probs=99.4
Q ss_pred CCEEeccCccCCccCccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccC
Q 002435 217 LTLLSLSGCELRGRIPSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSL 296 (922)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (922)
|+.+.+.. .+...-+.+|.++++|+.++++.|+++.....+|. +.+|+.+.+..+ ++..-..+|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 23323333444444444444444444433223333 344444444422 3322333444444444444443
Q ss_pred CCCCCCCcccccCCCCCcEEEeeccCCCCcccccccCCCCCceEecCCCccC-----ccCchhhcCCCCccEEEccCCCC
Q 002435 297 NRFRGKTPHSMGNFTRLYWLSLASNDFSGELPASFGNLRSLEGLDISECKFS-----SQIPSSLRNLAQLKFLEFSHNNF 371 (922)
Q Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l 371 (922)
+ ++......|.+ .+|+.+.+. +.++..-...|.+|++|+.+++.+|.+. ...+.+|.+|++|+.+++.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 2 23233333433 445555552 2233233344555555555555444432 22334455555666666553 23
Q ss_pred cCccchhhhhhccCCcceEeCcCccccccccccccCCCCccEEEecCCCCCCCcc-cccCC-CCccEEECcCCC
Q 002435 372 SGPIDLDMFLVNFKHLEHLSLSSNRLSLFTKAIFNTSQKFNFVGLRSCNLNEFPN-FLKNQ-HYLEVLDLSCNK 443 (922)
Q Consensus 372 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~lp~-~l~~~-~~L~~L~Ls~n~ 443 (922)
+ .++...| .++++|+.+.+..+ ++.+...+|..+ +|+.+.+.++.+..++. .+..+ ..++.|.+..+.
T Consensus 312 ~-~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 312 R-ILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp C-EECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred E-EEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 2 3444444 55566666666333 555555666666 66666666665554432 33333 355666665544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.6e-12 Score=126.79 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=61.4
Q ss_pred cEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC
Q 002435 558 SILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637 (922)
Q Consensus 558 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 637 (922)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 2333322 45555555555555555555666666666666666666555555566666666666666
Q ss_pred cccccCCCCCCCCCCCCccEEEccCCcCCCCCC
Q 002435 638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLP 670 (922)
Q Consensus 638 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 670 (922)
++++..+..+ ..+++|+.|+|++|++.+.++
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCcccccc
Confidence 6665443322 456777777777777776554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.5e-14 Score=144.78 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=101.9
Q ss_pred CCceeeccCCcccCcCCh------hhhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCC
Q 002435 506 QTKHYLVSNNSLTGKIPF------WICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGR 579 (922)
Q Consensus 506 ~l~~L~ls~n~l~~~ip~------~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~ 579 (922)
.++.++++.+.++|.+|. .+.. +++|++|++++|.+++ +| .+..++ +|++|++++|+++ .+|..+..++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCC
Confidence 344445555555555554 5555 7778888888888876 55 677776 6888888888877 4566666677
Q ss_pred CccEEecCCCcccccCCccccCCCCCcEEECCCCcCccCcc-hhhcCCCCCCEEEcCCCcccccCCCC--------CCCC
Q 002435 580 SLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNNQISGTFP-SWLGTLRELNVLILKSNKLHGMIREP--------NTGC 650 (922)
Q Consensus 580 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~ 650 (922)
+|++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.+|.. ....
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 788888888888753 3 57777788888888888775433 46777778888888888777665442 0113
Q ss_pred CCCCccEEEccCCcCC
Q 002435 651 GFPELRIIDLSNNRFT 666 (922)
Q Consensus 651 ~l~~L~~LdLs~N~l~ 666 (922)
.+++|+.|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 456666665 55544
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1e-12 Score=128.61 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcc--cccCCCCCcEEE
Q 002435 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPH--SMGNFTRLYWLS 317 (922)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~ 317 (922)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. +|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 444444444444432 344444555555555555543222333455555555555555532 222 444555555555
Q ss_pred eeccCCCCccccc----ccCCCCCceEecCCCccC
Q 002435 318 LASNDFSGELPAS----FGNLRSLEGLDISECKFS 348 (922)
Q Consensus 318 L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~ 348 (922)
+++|.++ .+|.. +..+++|++|+++.|...
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555554 23332 555666666666666543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.5e-11 Score=137.15 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=30.7
Q ss_pred ccccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEc
Q 002435 232 PSLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIGNLASLEQLEL 294 (922)
Q Consensus 232 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 294 (922)
..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 345556666666666532 44333445566666666665433 33222334555555554443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=3.8e-11 Score=131.60 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred EEcCCC-cccCCCcccccCCCCccEEecCC-CcccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCCC
Q 002435 560 LDLQHN-KFCGSIPQTFLSGRSLMMIDLSD-NLLQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKSN 637 (922)
Q Consensus 560 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 637 (922)
++++++ ++++ +|. +..+++|++|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5553 444 55666666666664 6666666666666666666666666666666666666666666666666
Q ss_pred cccccCCCCCCCCCCCCccEEEccCCcCCCCCChhhhhccc
Q 002435 638 KLHGMIREPNTGCGFPELRIIDLSNNRFTGKLPSKYFQCWN 678 (922)
Q Consensus 638 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~~~ 678 (922)
+|++..+..+ ..++ |+.|+|++|+|.+.+...++..|.
T Consensus 91 ~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 91 ALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp CCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred ccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 6665544333 2233 777777777777777666665543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.4e-12 Score=143.42 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=84.2
Q ss_pred CCCCEEECCCCCCCCcCchhhcC-----CCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCchh
Q 002435 136 SRLSYLNLSSAGFFGQIPSEILE-----LSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIPHS 210 (922)
Q Consensus 136 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~ 210 (922)
++|++|+|++|.++......+.. .++|++|+|++|.+.. ..+......+++|++|+|++|.++......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~------~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP------AGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH------HHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH------HHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 44556666666554332222222 2466666666665321 112222233445666666666655433333
Q ss_pred c-----cCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccCCCCC
Q 002435 211 L-----ANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWNELSG 277 (922)
Q Consensus 211 l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 277 (922)
+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3 2345666666666666532 333345566666777766666532 23445555666666666666653
Q ss_pred C----chhhhhCCCCCCEEEccCCCCCCC
Q 002435 278 E----LPASIGNLASLEQLELSLNRFRGK 302 (922)
Q Consensus 278 ~----~~~~l~~l~~L~~L~L~~n~l~~~ 302 (922)
. +...+...++|++|+|++|.++..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2 333344556666666666666543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4e-11 Score=131.41 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=62.4
Q ss_pred ccceEEEecc-ccccccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 002435 729 NFLTGVILSS-NRFDGEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLTFLEFFN 807 (922)
Q Consensus 729 ~~l~~L~Ls~-N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ 807 (922)
..|+.|+|++ |+|++..|..|++|++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3477777775 777777667777777777777777777777777777777777777777777766666666655 77777
Q ss_pred ccCCccccC
Q 002435 808 VSNNNLTGP 816 (922)
Q Consensus 808 ls~N~lsg~ 816 (922)
+++|++...
T Consensus 110 l~~N~~~c~ 118 (347)
T 2ifg_A 110 LSGNPLHCS 118 (347)
T ss_dssp CCSSCCCCC
T ss_pred eeCCCccCC
Confidence 777777654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=3e-09 Score=118.46 Aligned_cols=131 Identities=12% Similarity=0.150 Sum_probs=87.0
Q ss_pred hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435 525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604 (922)
Q Consensus 525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 604 (922)
.+..+..|+.+.+.++..+ .....|.++. .|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|++
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3344777888887665433 4455677766 68888886 4565566678888889999988764 66666778889999
Q ss_pred CcEEECCCCcCccCcchhhcCCCCCCEEEcCCCcccccCCCCCCCCCCCCccEEEccCCcC
Q 002435 605 LKFLDLGNNQISGTFPSWLGTLRELNVLILKSNKLHGMIREPNTGCGFPELRIIDLSNNRF 665 (922)
Q Consensus 605 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l 665 (922)
|+.+.+..+ ++.+...+|.+|++|+.+++.++..... .+.....|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCEEEeCCCCE
Confidence 999998654 6667778888999999999888765432 224456777777766644
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=1.8e-12 Score=142.55 Aligned_cols=136 Identities=21% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCCEEeccCccCCccCcccc-CCCCCCCEEeCcCCCCCCCccccc-----CCCCCCcEEEcccCCCCC----Cchhhhh
Q 002435 215 SSLTLLSLSGCELRGRIPSLL-GNLTKLMYLDLSFNNLLGELPTSI-----GNLDCLKRLDISWNELSG----ELPASIG 284 (922)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l~ 284 (922)
++|++|+|++|.+.......+ ..+++|++|+|++|.+++.....+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554443221111 123345555555555543322222 234556666666665543 1333345
Q ss_pred CCCCCCEEEccCCCCCCCC----cccccCCCCCcEEEeeccCCCCc----ccccccCCCCCceEecCCCccCcc
Q 002435 285 NLASLEQLELSLNRFRGKT----PHSMGNFTRLYWLSLASNDFSGE----LPASFGNLRSLEGLDISECKFSSQ 350 (922)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~ 350 (922)
.+++|++|+|++|.+++.. ...+...++|+.|+|++|.+++. ++..+...++|++|+|++|.+++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5566666666666554321 22334444555555555555431 222333445566666666665543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=6.4e-09 Score=115.85 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=69.9
Q ss_pred hhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCC
Q 002435 526 CNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSL 605 (922)
Q Consensus 526 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 605 (922)
+..++.|+.+.+. +.++.....+|.++. +|+.+++..+ ++.+-..+|.++.+|+.+.+..+ ++.+...+|.+|++|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 3336677777775 345545556777776 6888888754 55556678888899999988654 666667789999999
Q ss_pred cEEECCCCcCccCcchhhcCCCCCCEEEcCCCcc
Q 002435 606 KFLDLGNNQISGTFPSWLGTLRELNVLILKSNKL 639 (922)
Q Consensus 606 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 639 (922)
+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999998876542 4567788888888776654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=5.8e-09 Score=113.50 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=76.5
Q ss_pred ChhHHHhcCCCCCEEEcCCCcCCCCCchhccCCCCCCEEeccCccCCccCccccC--CCCCCCEEeCcC--CCCCCC---
Q 002435 182 NLGNLVKKLTNLKELALGGVTISSPIPHSLANLSSLTLLSLSGCELRGRIPSLLG--NLTKLMYLDLSF--NNLLGE--- 254 (922)
Q Consensus 182 ~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~--n~l~~~--- 254 (922)
.+...+..+++|++|.++++.-. .++. +. +++|++|++..|.+.......+. .+++|++|+|+. |...+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 35556666667777776655211 1222 22 56677777766665533333332 566666666642 111111
Q ss_pred --ccccc--CCCCCCcEEEcccCCCCCCchhhhhCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEeeccCCCCc----
Q 002435 255 --LPTSI--GNLDCLKRLDISWNELSGELPASIGNLASLEQLELSLNRFRGKTPHSMGNFTRLYWLSLASNDFSGE---- 326 (922)
Q Consensus 255 --~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---- 326 (922)
+...+ ..+++|++|++++|.+.+..+..+.. ...+++|++|+|+.|.+.+.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~---------------------a~~~~~L~~LdLs~n~L~d~G~~~ 298 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE---------------------SDILPQLETMDISAGVLTDEGARL 298 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH---------------------CSSGGGCSEEECCSSCCBHHHHHH
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh---------------------CccCCCCCEEECCCCCCChHHHHH
Confidence 00111 13455555555555554322222221 01234555555555554432
Q ss_pred ccccccCCCCCceEecCCCccCccCchhhcC-CCCccEEEccCCC
Q 002435 327 LPASFGNLRSLEGLDISECKFSSQIPSSLRN-LAQLKFLEFSHNN 370 (922)
Q Consensus 327 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~ 370 (922)
++..+..+++|+.|+++.|.++......+.. + ...++++.++
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2223344566777777777665433333332 2 2446666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=1.3e-08 Score=110.81 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=74.4
Q ss_pred cccCCCCCCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCCCCCCchhhhh--CCCCCCEEEccC--CCCCCCC-c---
Q 002435 233 SLLGNLTKLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNELSGELPASIG--NLASLEQLELSL--NRFRGKT-P--- 304 (922)
Q Consensus 233 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~~-~--- 304 (922)
..+..+++|+.|+|++|.-. .++. +. +++|++|++..+.+.......+. .+++|++|+|+. +...+.. .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33445566666666555211 1222 22 66777777777776544333443 677788877753 1111110 0
Q ss_pred -ccc--cCCCCCcEEEeeccCCCCccccccc---CCCCCceEecCCCccCcc----CchhhcCCCCccEEEccCCCCc
Q 002435 305 -HSM--GNFTRLYWLSLASNDFSGELPASFG---NLRSLEGLDISECKFSSQ----IPSSLRNLAQLKFLEFSHNNFS 372 (922)
Q Consensus 305 -~~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 372 (922)
..+ ..+++|+.|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 112 2456777777777776543322222 356777777777776653 2223344567777777777654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=6e-07 Score=99.27 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEE
Q 002435 529 SNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFL 608 (922)
Q Consensus 529 ~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 608 (922)
+..|+.+.+..+ ++.....+|.++. +|+.+.+..+ ++......|.++.+|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 555666665543 3333344555554 4666666433 433444556666666666666666665556666666666666
Q ss_pred ECCCCcCccCcchhhcCCCCCCEEEcCC
Q 002435 609 DLGNNQISGTFPSWLGTLRELNVLILKS 636 (922)
Q Consensus 609 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 636 (922)
+|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66543 5544555666666666665543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=7.4e-07 Score=98.55 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=71.4
Q ss_pred hhhcCCccceEEccCccCCCCCCchhhhccCcccEEEcCCCcccCCCcccccCCCCccEEecCCCcccccCCccccCCCC
Q 002435 525 ICNSSNSLEILDLSYNNLSGLLPQCLDNFSDHLSILDLQHNKFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSS 604 (922)
Q Consensus 525 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 604 (922)
.+..+.+|+.+.+..+ ++......|.++. +|+.+.+.++.++.+-..+|.++.+|+.++|..+ ++.+...+|.+|++
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 3333667777777543 4444455677766 6888888888887677778888889999988754 66666778999999
Q ss_pred CcEEECCCCcCccCcchhhcCCCC
Q 002435 605 LKFLDLGNNQISGTFPSWLGTLRE 628 (922)
Q Consensus 605 L~~L~Ls~N~l~~~~p~~~~~l~~ 628 (922)
|+.+.+..+ ++.+-..+|.++..
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCEEEECCc-cCEEchhHhhCCCC
Confidence 999888655 66555666766543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=1.4e-09 Score=111.93 Aligned_cols=22 Identities=0% Similarity=-0.259 Sum_probs=15.2
Q ss_pred CCccccceEecCCCCcEEEEEC
Q 002435 71 DCCLWDGVECNENTGHVIKLDL 92 (922)
Q Consensus 71 ~~c~w~gv~c~~~~~~v~~L~L 92 (922)
..|.|.|+.|++...+|..+-.
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEe
Confidence 4689999999865445544433
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.5e-07 Score=92.31 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=19.6
Q ss_pred ccCCCCCCEEECCCC-CCCCc----CchhhcCCCCCCEEEcCCCCC
Q 002435 132 IINLSRLSYLNLSSA-GFFGQ----IPSEILELSNLVSLDLSHNSY 172 (922)
Q Consensus 132 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~ 172 (922)
+...++|++|+|++| .+... +...+...++|++|+|++|.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 344455555555555 44321 223334445555555555553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.3e-07 Score=97.40 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=57.5
Q ss_pred EEecccc---ccccCcccccccCCCCEEeCCCccccc--cCCccccCCCCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 002435 734 VILSSNR---FDGEIPTSIANLKGLQVLSLANNSLHG--HILSCLGNLTGLESLDLSNNKFSGQIPQQLVDLT--FLEFF 806 (922)
Q Consensus 734 L~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~L~--~L~~L 806 (922)
++++.|. +.+.++....++++|++|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 4566663 333333333567788888888888887 4566777888888888888888875 3344444 78888
Q ss_pred eccCCccccCCC
Q 002435 807 NVSNNNLTGPIP 818 (922)
Q Consensus 807 ~ls~N~lsg~iP 818 (922)
++++|++++.+|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 888888887776
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=2e-07 Score=91.41 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=28.5
Q ss_pred CCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEc--ccCCCCCC----chhhhhCCCCCCEEEccCCCC
Q 002435 237 NLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDI--SWNELSGE----LPASIGNLASLEQLELSLNRF 299 (922)
Q Consensus 237 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 299 (922)
..+.|++|+|++|.+.+. +...+...+.|++|+| ++|.++.. +...+...++|++|+|++|.+
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334455555555544432 2233444445555555 44555432 223333445555555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=6.8e-06 Score=78.18 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=42.1
Q ss_pred CCCCEEECCCCCCCCcCchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcC----CCCCEEEcCCCc-CCCCCchh
Q 002435 136 SRLSYLNLSSAGFFGQIPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKL----TNLKELALGGVT-ISSPIPHS 210 (922)
Q Consensus 136 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l----~~L~~L~L~~n~-~~~~~~~~ 210 (922)
.+|++||+++|.++..--..+..|++|++|+|++|.. +++..+. .+..+ ++|++|++++|. ++...-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~-----ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY-----IEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT-----CCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc-----cCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 3566666666666555445556666666666666631 1111111 12221 245555555543 44433444
Q ss_pred ccCCCCCCEEeccCcc
Q 002435 211 LANLSSLTLLSLSGCE 226 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~ 226 (922)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 4555555555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.3e-05 Score=76.28 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCCEEeCcCCCCCCCcccccCCCCCCcEEEcccCC-CCCCchhhhhCC----CCCCEEEccCCC-CCCCCcccccCCCCC
Q 002435 240 KLMYLDLSFNNLLGELPTSIGNLDCLKRLDISWNE-LSGELPASIGNL----ASLEQLELSLNR-FRGKTPHSMGNFTRL 313 (922)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L 313 (922)
+|++||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544433444555555555555553 443322333332 245555555542 433323333444444
Q ss_pred cEEEeecc
Q 002435 314 YWLSLASN 321 (922)
Q Consensus 314 ~~L~L~~n 321 (922)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00063 Score=65.91 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=37.9
Q ss_pred ccCCCCCCEEeccCccCCcc----CccccCCCCCCCEEeCcCCCCCCC----cccccCCCCCCcEEEcccC---CCCC--
Q 002435 211 LANLSSLTLLSLSGCELRGR----IPSLLGNLTKLMYLDLSFNNLLGE----LPTSIGNLDCLKRLDISWN---ELSG-- 277 (922)
Q Consensus 211 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n---~l~~-- 277 (922)
+..-+.|++|+|++|++... +.+.+..-+.|++|+|+.|.|.+. +.+++..-+.|++|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33334455555555544422 222233344555555555555432 2223344444555555543 2221
Q ss_pred --CchhhhhCCCCCCEEEccCC
Q 002435 278 --ELPASIGNLASLEQLELSLN 297 (922)
Q Consensus 278 --~~~~~l~~l~~L~~L~L~~n 297 (922)
.+...+..-+.|+.|+++.|
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 12333444455555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.00085 Score=65.01 Aligned_cols=88 Identities=10% Similarity=0.116 Sum_probs=43.8
Q ss_pred CCCCCCEEECCCC-CCCCc----CchhhcCCCCCCEEEcCCCCCCCcccccCCChhHHHhcCCCCCEEEcCCCcCCCCCc
Q 002435 134 NLSRLSYLNLSSA-GFFGQ----IPSEILELSNLVSLDLSHNSYYNLIELKEPNLGNLVKKLTNLKELALGGVTISSPIP 208 (922)
Q Consensus 134 ~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~ 208 (922)
+-+.|++|+|+++ .+... +...+..-+.|++|+|++|++.+.- ...+...+..-+.|++|+|+.|.|.....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g---a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE---ARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH---HTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH---HHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455666666653 44221 2334444556666666666653221 24445555555666666666666554322
Q ss_pred ----hhccCCCCCCEEeccC
Q 002435 209 ----HSLANLSSLTLLSLSG 224 (922)
Q Consensus 209 ----~~l~~l~~L~~L~Ls~ 224 (922)
+++..-+.|++|+|++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 2233334455555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.0016 Score=58.95 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=18.4
Q ss_pred CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcc
Q 002435 778 GLESLDLSNNKFSGQIPQQLVDLTFLEFFNVSNNNL 813 (922)
Q Consensus 778 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~ls~N~l 813 (922)
+|+.|||++|+|+...+..|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555544444455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.64 E-value=0.0022 Score=57.96 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=48.6
Q ss_pred eEEEecccccc-ccCcccccccCCCCEEeCCCccccccCCccccCCCCCCEEeCCCCcCc
Q 002435 732 TGVILSSNRFD-GEIPTSIANLKGLQVLSLANNSLHGHILSCLGNLTGLESLDLSNNKFS 790 (922)
Q Consensus 732 ~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 790 (922)
..+|.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36889999997 46776543 46899999999999988889999999999999999875
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=81.93 E-value=0.91 Score=31.35 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.7
Q ss_pred hhhHHHHHH
Q 002435 880 AGGLIVGVV 888 (922)
Q Consensus 880 ~~~~~~~~~ 888 (922)
+.|++.|++
T Consensus 14 A~gVVgGv~ 22 (44)
T 2ks1_B 14 ATGMVGALL 22 (44)
T ss_dssp THHHHHHHH
T ss_pred EeehhHHHH
Confidence 334444433
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=79.25 E-value=0.99 Score=31.10 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 002435 881 GGLIVGV 887 (922)
Q Consensus 881 ~~~~~~~ 887 (922)
.|++.|+
T Consensus 14 ~gVVgGv 20 (44)
T 2l2t_A 14 AGVIGGL 20 (44)
T ss_dssp HHHHHHH
T ss_pred EeehHHH
Confidence 3443333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.48 E-value=24 Score=29.40 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=25.2
Q ss_pred ccccCCccccCCCCCcEEECCCCcCccCcchhhcCCCCCCEEEcCC
Q 002435 591 LQGRIPRSLVNCSSLKFLDLGNNQISGTFPSWLGTLRELNVLILKS 636 (922)
Q Consensus 591 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 636 (922)
++.+-..+|.+|++|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455666666666666543 3334455666666666666554
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.38 E-value=59 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=34.9
Q ss_pred cccCCCcccccCCCCccEEecCCCcccccCCccccCCCCCcEEECCCC
Q 002435 566 KFCGSIPQTFLSGRSLMMIDLSDNLLQGRIPRSLVNCSSLKFLDLGNN 613 (922)
Q Consensus 566 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 613 (922)
.++.+-...|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445555667888888888888764 55566778888999988888764
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=33.63 E-value=19 Score=26.85 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 002435 883 LIVGVVLGLNFSIGILEW 900 (922)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~ 900 (922)
+++|.+++++.+.+...+
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 455666666665554443
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.56 E-value=36 Score=22.62 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 002435 881 GGLIVGVVLGLNF 893 (922)
Q Consensus 881 ~~~~~~~~~~~~~ 893 (922)
.|+++|.++++.+
T Consensus 14 AGiVvG~v~gv~l 26 (38)
T 2k1k_A 14 VAVIFGLLLGAAL 26 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHH
Confidence 4455555444433
Done!