BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002437
(921 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLR----------FSDLASE-- 412
F L+++G+ GKS+ +NAL+G+ L V P T +T LR F+D S
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQ 129
Query: 413 --------------------EQQRCERHPDGQY-ICYLPSPILKEMI-IVDTPGTNVILQ 450
EQ++ + PD Y + P +L++ I IVD+PG N
Sbjct: 130 LDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA 189
Query: 451 RQQRLTEEFVPRADLVLFVISADRPLTESEVVFL-RYTQQWKKKVVFVLNKSD 502
R + L+ +V +LFV+ A +P T E +L Y + V F++N D
Sbjct: 190 RNE-LSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWD 241
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 123 ASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDS 181
A + +YE L+ + ++ ALF + +RVD+A AV+A GV L + +P VA+ +
Sbjct: 50 APTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLGPEDMPIEVAKEIAPNL 109
Query: 182 MSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFGEGQKADV----IEN--SLFTN 233
++G +V +L+ A A +GAD+L F K D +E + +
Sbjct: 110 --------IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES 160
Query: 234 VKIPIFIMNASPLVDVSKFLKSGASGFVI 262
VKIP+ + + + LK+G G +
Sbjct: 161 VKIPVVAIGGINKDNAREVLKTGVDGIAV 189
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 361 IDEPF--LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCE 418
ID+ + + IVG N GKS+++N LLG+ K + + T R +
Sbjct: 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQ---KISITSRKAQTTRHRIVGI--------- 50
Query: 419 RHPDGQYICYLPSPILKEMIIVDTPGTNVILQR-----QQRLTEEFVPRADLVLFVISAD 473
H +G Y + I VDTPG ++ +R + + +LV+FV+
Sbjct: 51 -HTEGAY----------QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGT 99
Query: 474 RPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533
R + E+V L ++ K V+ +NK D Q +L + F+ + M L+ I
Sbjct: 100 RWTPDDEMV-LNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-SQMNFLD-----IV 152
Query: 534 PVSARSTL 541
P+SA + L
Sbjct: 153 PISAETGL 160
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 35/181 (19%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
+ IVG N GKS+++N LLG+ K + + T R + H +G Y
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQ---KISITSRKAQTTRHRIVGI----------HTEGAY 53
Query: 426 ICYLPSPILKEMIIVDTPGTNVILQR-----QQRLTEEFVPRADLVLFVISADRPLTESE 480
+ I VDTPG ++ +R + + +LV+FV+ R + E
Sbjct: 54 ----------QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDE 103
Query: 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540
+V L ++ K V+ +NK D Q +L + F+ + M L+ I P+SA +
Sbjct: 104 MV-LNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-SQMNFLD-----IVPISAETG 156
Query: 541 L 541
L
Sbjct: 157 L 157
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 32/162 (19%)
Query: 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ 415
DA ++ +VIVG+ N GKS+++N LL + +P T D+ SEE
Sbjct: 235 DAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTR-------DVISEE-- 285
Query: 416 RCERHPDGQYICYLPSPILKEMIIVDTPG----TNVILQRQ--QRLTEEFVPRADLVLFV 469
+ + + IVDT G TN +++R +R +E + +AD+VLFV
Sbjct: 286 -----------IVIRGILFR---IVDTAGVRSETNDLVERLGIERTLQE-IEKADIVLFV 330
Query: 470 ISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511
+ A PL E + L + K+ + V+NK D+ + E E
Sbjct: 331 LDASSPLDEEDRKILERIKN--KRYLVVINKVDVVEKINEEE 370
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
IVG+ N GKS+++N LLG + T + L ++ +E Q I +
Sbjct: 15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQ-----------IIF 63
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD---RPLTESEVVFLR 485
L +P + E D G +++ +Q L E AD++LF+I A RP E ++
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEE-----ADVILFMIDATEGWRP--RDEEIYQN 116
Query: 486 YTQQWKKKVVFVLNKSD 502
+ + K V+ V+NK D
Sbjct: 117 FIKPLNKPVIVVINKID 133
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
IVG+ N GKS+++N LLG + T + L ++ +E Q I +
Sbjct: 14 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQ-----------IIF 62
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD---RPLTESEVVFLR 485
L +P + E D G +++ +Q L E AD++LF+I A RP E ++
Sbjct: 63 LDTPGIYEPKKSDVLGHSMVEIAKQSLEE-----ADVILFMIDATEGWRP--RDEEIYQN 115
Query: 486 YTQQWKKKVVFVLNKSD 502
+ + K V+ V+NK D
Sbjct: 116 FIKPLNKPVIVVINKID 132
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 441 DTPGTNVI---LQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQWKKKVV 495
D G+ VI L R+ LT+ V D V+ V++ P T + ++ FL ++ + + V
Sbjct: 60 DETGSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETV 119
Query: 496 FVLNKSDLY-----QNAFELEEAIS----FVKENTMKLLNIENVTIYPVSARSTLEAKLS 546
V+NK DLY + ELEE S VK + + IE + Y ST+
Sbjct: 120 MVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAG--- 176
Query: 547 VSSAVGK 553
S VGK
Sbjct: 177 -LSGVGK 182
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 31/153 (20%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
++IVG N GKS++ N L+ K K +V E+++ R P +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKK---KKAIV----------------EDEEGVTRDPVQDTV 44
Query: 427 CYLPSPILKEMIIVDTPGT-----NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV 481
+ K +VDT G ++I Q+ + +T + ADLVLFV+ R +T+ +
Sbjct: 45 EWYG----KTFKLVDTCGVFDNPQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDE 100
Query: 482 VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514
+ ++ + V NK+ +N E E +
Sbjct: 101 SLADFLRKSTVDTILVANKA---ENLREFEREV 130
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 340 VIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN 399
+IKK +EE L +++ +I + + IVG N GKS++ NA+L K +P T
Sbjct: 160 IIKK----LEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT- 214
Query: 400 EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF 459
+ + E DG ++ + VDT G + + R E++
Sbjct: 215 -----------TRDPVDDEVFIDG-----------RKYVFVDTAGLRRKSRVEPRTVEKY 252
Query: 460 --------VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+ +AD+V+ V+ A + +T + ++ + V V NK DL
Sbjct: 253 SNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKWDL 304
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 40/153 (26%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420
+E ++G N GKSS++NA+LG +R + V TT + F + QQ
Sbjct: 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF----TYNQQ----- 243
Query: 421 PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRL---TEEF--------VPRADLVLFV 469
E +IVDT G ++++ ++ TE++ + R+++V V
Sbjct: 244 ---------------EFVIVDTAG----MRKKGKVYETTEKYSVLRALKAIDRSEVVAVV 284
Query: 470 ISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
+ + + E + Y + K VV V+NK D
Sbjct: 285 LDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 317
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 28/153 (18%)
Query: 354 LIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEE 413
L+ S + +P ++ IVG N GKS++ N + G+R +V T +T
Sbjct: 14 LVPRGSHMGKP-VVAIVGRPNVGKSTIFNRIAGERI---SIVEDTPGVT----------- 58
Query: 414 QQRCERHPDGQYICYLPSPILKEMIIVDTPGTNV----ILQRQQRLTEEFVPRADLVLFV 469
R + +++ Y + ++DT G ++ L + ++ E + AD+++F+
Sbjct: 59 --RDRIYSSAEWLNY-------DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFM 109
Query: 470 ISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
++ +T ++ + + KK VV +NK D
Sbjct: 110 VNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 42/175 (24%)
Query: 366 LLVIVGEYNSGKSSVINALL-----GKRYLKDGVVPTTN----------EITFLRFSDLA 410
++++ G+Y++GK+S I LL G R G PTT+ E T + +
Sbjct: 67 MVLVAGQYSTGKTSFIQYLLEQEVPGSRV---GPEPTTDCFVAVMHGETEGTVPGNALVV 123
Query: 411 SEEQQRCERHPDG-----QYIC-YLPSPILKEMIIVDTPGTNVILQRQQRLTEE------ 458
E+ + +P G +++C LP+ +L+ + I+DTPG ++ +QR++
Sbjct: 124 DPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPG--ILSGAKQRVSRGYDFPAV 181
Query: 459 ---FVPRADLVLFVISADRPLTESE----VVFLRYTQQWKKKVVFVLNKSDLYQN 506
F R DL++ + A + E + LR + K+ VLNK+D+ +
Sbjct: 182 LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHED---KIRVVLNKADMVET 233
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 314 AGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV-IVGE 372
G+ K + +++I E +L I++ +A + S + DA+ +ID L V + GE
Sbjct: 21 TGYFKKFNTGRKIISQE---ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGE 77
Query: 373 YNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
SGKSS IN L G ++G T E+T ERHP
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------------MERHP-------YKH 116
Query: 432 PILKEMIIVDTPGT-------NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
P + ++ D PG + L++ + +F +ISA R ++++
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF-------FIIISATR-FKKNDIDIA 168
Query: 485 RYTQQWKKKVVFVLNKSD 502
+ KK+ FV K D
Sbjct: 169 KAISMMKKEFYFVRTKVD 186
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420
+E ++G N GKSS++NA LG +R + V TT + F + QQ
Sbjct: 173 EEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSF----TYNQQ----- 223
Query: 421 PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF--------VPRADLVLFVISA 472
E +IVDT G + TE++ + R+++V V+
Sbjct: 224 ---------------EFVIVDTAGXRK-KGKVYETTEKYSVLRALKAIDRSEVVAVVLDG 267
Query: 473 DRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
+ + E + Y + K VV V+NK D
Sbjct: 268 EEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 297
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 27/141 (19%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ IVG N GKS++ N + G+R +V T +T R + ++
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERI---SIVEDTPGVT-------------RDRIYSSAEW 48
Query: 426 ICYLPSPILKEMIIVDTPGTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEV 481
+ Y + ++DT G ++ L + ++ E AD+++F ++ +T ++
Sbjct: 49 LNY-------DFNLIDTGGIDIGDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADE 101
Query: 482 VFLRYTQQWKKKVVFVLNKSD 502
+ + KK VV +NK D
Sbjct: 102 EVAKILYRTKKPVVLAVNKLD 122
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 404 LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRA 463
LR + +A+ E +H G ++ LPS +++ +DTPG + R T+
Sbjct: 24 LRKTQVAAMEAGGITQHI-GAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQ----VT 76
Query: 464 DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
D+V+ V++AD + + V +++ + +V +NK D
Sbjct: 77 DIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCD 115
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLK--DGVV---PTTNEITFLRFSDLASEEQQRCE 418
+V+VG +SGKSSV+ ++G+ +L G+V P ++T L +D S+ Q+ E
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGE 83
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 45/195 (23%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFL---------------------R 405
+ +VG +SGKSSV+ +++GK +L G T L +
Sbjct: 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKK 96
Query: 406 FSDLAS---EEQQRCERHPD-GQYICYLP------SPILKEMIIVDTPG---------TN 446
F+D A+ E Q +R + I +P SP + + ++D PG ++
Sbjct: 97 FTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSD 156
Query: 447 VILQRQQRLTEEFVPRADLVLFVIS-ADRPLTESEVVFL-RYTQQWKKKVVFVLNKSDLY 504
I++ + + ++ + + ++ IS A++ L S+ + + R + VL K DL
Sbjct: 157 SIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLM 216
Query: 505 Q---NAFELEEAISF 516
+A E+ E SF
Sbjct: 217 DKGTDAVEILEGRSF 231
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Query: 314 AGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFL-LVIVGE 372
G+ K + +++I E +L I++ + + S + DA+ +ID L + + GE
Sbjct: 21 TGYFKKFNTGRKIISQE---ILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGE 77
Query: 373 YNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
SGKSS IN L G ++G T E+T ERHP
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------------MERHP-------YKH 116
Query: 432 PILKEMIIVDTPGT-------NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
P + ++ D PG + L++ + +F +ISA R ++++
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF-------FIIISATR-FKKNDIDIA 168
Query: 485 RYTQQWKKKVVFVLNKSD 502
+ KK+ FV K D
Sbjct: 169 KAISMMKKEFYFVRTKVD 186
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Query: 314 AGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV-IVGE 372
G+ K + +++I E +L I++ + + S + DA+ +ID L V + GE
Sbjct: 21 TGYFKKFNTGRKIISQE---ILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGE 77
Query: 373 YNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
SGKSS IN L G ++G T E+T ERHP
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------------MERHP-------YKH 116
Query: 432 PILKEMIIVDTPGT-------NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
P + ++ D PG + L++ + +F +ISA R ++++
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF-------FIIISATR-FKKNDIDIA 168
Query: 485 RYTQQWKKKVVFVLNKSD 502
+ KK+ FV K D
Sbjct: 169 KAISMMKKEFYFVRTKVD 186
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 41/198 (20%)
Query: 314 AGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFL-LVIVGE 372
G+ K + +++I E +L I++ + + S + DA+ +ID L + + GE
Sbjct: 21 TGYFKKFNTGRKIISQE---ILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGE 77
Query: 373 YNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
SGKSS IN L G ++G T E+T ERHP
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------------MERHP-------YKH 116
Query: 432 PILKEMIIVDTPGT-------NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
P + ++ D PG + L++ + +F +ISA R ++++
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF-------FIIISATR-FKKNDIDIA 168
Query: 485 RYTQQWKKKVVFVLNKSD 502
+ KK+ FV K D
Sbjct: 169 KAISAMKKEFYFVRTKVD 186
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 347 LMEEVSLLIDAVSQ---IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT----- 398
L EV+ LID+ + E VI G+ N+GKS+++N LLG+ +P T
Sbjct: 213 LRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI 272
Query: 399 -----NEITFLRFSDLAS 411
++ T R +D A
Sbjct: 273 EECFIHDKTMFRLTDTAG 290
>pdb|3O63|A Chain A, Crystal Structure Of Thiamin Phosphate Synthase From
Mycobacterium Tuberculosis
pdb|3O63|B Chain B, Crystal Structure Of Thiamin Phosphate Synthase From
Mycobacterium Tuberculosis
Length = 243
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYE--------AACLLKSVVKDR--ALFLIA 148
GD + A+A V I+ L + G+ + AAC + + R ALF +
Sbjct: 43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVN 102
Query: 149 ERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLD 199
+R DIA A A + L + LP VAR + L+GR+ D
Sbjct: 103 DRADIARAAGADVLHLGQRDLPVNVARQILAPDT-------LIGRSTHDPD 146
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 26/139 (18%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VIVG N GKSS+ N LL KR VV +T + ++ R
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKR---SAVVADVPGVTRDLKEGVVETDRGR---------- 50
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF---VPRADLVLFVISADRPLTESEVVF 483
++VDT G + ++++ E+ + A++VLF + LT+++
Sbjct: 51 ----------FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEV 100
Query: 484 LRYTQQWKKKVVFVLNKSD 502
Y ++ K V+ V K D
Sbjct: 101 AEYLRRKGKPVILVATKVD 119
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 22/78 (28%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+V+VG+ +GKS+ N++LG++ G + IT ++CE+
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKS--IT------------KKCEKRSS---- 73
Query: 427 CYLPSPILKEMIIVDTPG 444
S E+++VDTPG
Sbjct: 74 ----SWKETELVVVDTPG 87
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 358 VSQIDEPFLLV-IVGEYNSGKSSVINALLGKR 388
+S I +P ++V IVG Y +GKS ++N L GK+
Sbjct: 31 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVP 396
++IVG N+GKS++IN L GKR G P
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 358 VSQIDEPFLLV-IVGEYNSGKSSVINALLGKR 388
+S I +P ++V IVG Y +GKS ++N L GK+
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 73
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 589 KERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESIS 648
+E+++L+LET + E LLS+ E +++K DA D A ID L +++ ++E +S
Sbjct: 163 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAK--IDELLGSILEKKNEMVS 220
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 344 ASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
+P+++ ++L I++ +L I G SGK+S++ +LG+ +G++ + ++F
Sbjct: 50 GNPVLKNINL------NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 344 ASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
+P+++ ++L I++ +L I G SGK+S++ +LG+ +G++ + ++F
Sbjct: 50 GNPVLKNINL------NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 344 ASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
+P+++ ++L I++ +L I G SGK+S++ +LG+ +G++ + ++F
Sbjct: 50 GNPVLKNINL------NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 344 ASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
+P+++ ++L I++ +L I G SGK+S++ +LG+ +G++ + ++F
Sbjct: 50 GNPVLKNINL------NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 344 ASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
+P+++ ++L I++ +L I G SGK+S++ +LG+ +G++ + ++F
Sbjct: 50 GNPVLKNINL------NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 34/152 (22%)
Query: 367 LVIVGEYNSGKSSVINALLGKRY--LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
+V+ G N GKSS +NAL+G+ + D TT+ + + E HP G
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV------------YKSMELHPIGP 84
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ +VDTPG + + + R ++ F RAD + V + E +
Sbjct: 85 ------------VTLVDTPGLDDVGELGRLRVEKARRVFY-RADCGILVTDSAPTPYEDD 131
Query: 481 VVFLRYTQQWKKKVVFVLNKSD-LYQNAFELE 511
VV L ++ + V V+NK D L + A EL+
Sbjct: 132 VVNL--FKEMEIPFVVVVNKIDVLGEKAEELK 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,914,422
Number of Sequences: 62578
Number of extensions: 950558
Number of successful extensions: 2847
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2819
Number of HSP's gapped (non-prelim): 61
length of query: 921
length of database: 14,973,337
effective HSP length: 108
effective length of query: 813
effective length of database: 8,214,913
effective search space: 6678724269
effective search space used: 6678724269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)