BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002437
(921 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40983|YOR6_CALSR Uncharacterized protein in xynA 3'region (Fragment)
OS=Caldicellulosiruptor sp. (strain Rt8B.4) PE=4 SV=1
Length = 402
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 50/314 (15%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFS----------------- 407
F LV++G++ GKS++IN +LG L GV+P T+ IT + +S
Sbjct: 48 FYLVVLGQFKRGKSTLINYMLGANLLPTGVLPLTSVITKIYYSPEVKVDVIFESGVKKEI 107
Query: 408 -----DLASEEQ-----QRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE 457
DL E+ Q+C D I Y + K+++IVDTPG + Q +T
Sbjct: 108 PVDELDLYCTERGNPKNQKC---VDTIEIGYPFDFLNKDVVIVDTPGIGSVYQHNTDVTY 164
Query: 458 EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517
EF+ ++D V+FV+S D P+TE E FL + K+ FV+NKSDL E+EE +SF
Sbjct: 165 EFIDKSDAVVFVLSVDPPITEVEKQFLLKIAENVDKIFFVINKSDLTSKN-EIEEIVSFT 223
Query: 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLL 577
+ N+ I+P+SA+ LE K+S +E + S I EK L
Sbjct: 224 TNVIKDITKKGNINIFPLSAKMALEGKIS--------KNEEMIEKSCVEI-----FEKEL 270
Query: 578 YSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKE 637
FL +E+ ++++ + ++ + L CE + D + + E I+ E
Sbjct: 271 KQFL------KEEKGKIQILSNLKSLDGFLGVCEAFLENDMKLKIMPVKQLEENIEKFNE 324
Query: 638 YVMKMESESISWRR 651
++ ++ I +
Sbjct: 325 FLERVNQNKIEIYK 338
>sp|Q5V0G6|THIE_HALMA Thiamine-phosphate synthase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=thiE PE=3
SV=1
Length = 211
Score = 61.2 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAA 155
AG +++ EA+ VG+V L + + YE L+ + ++ + F++ +R+D+A
Sbjct: 16 AGRTTDEIVAEAIESGVGVVQLREKNRTARERYELGQKLRELTREADVTFVVNDRIDLAQ 75
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL-- 213
A++A GV L D LP VAR+ + D ++GR+V T++ A A+++ GAD+L
Sbjct: 76 AIDADGVHLGDDDLPVSVARDILGDD-------AVIGRSVSTVEDAREAATA-GADYLGV 127
Query: 214 VCCFGEGQKADV 225
F G K D+
Sbjct: 128 GAVFATGSKDDI 139
>sp|Q3IP34|THIE_NATPD Thiamine-phosphate synthase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=thiE PE=3 SV=1
Length = 214
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA-ERVDIAA 155
AG ++++ A+ V IV L A+ + YE L+++ +D + L+ +R+D+AA
Sbjct: 17 AGRSTAEVVEAAIRGGVDIVQLRDKTATARERYEVGTELRTLTRDAGVPLVVNDRLDLAA 76
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL 213
A++A GV L D LP VAR + +VGR+V T DAA A + GAD+L
Sbjct: 77 AIDADGVHLGDDDLPIEVAREQLGSD-------AIVGRSVSTPDAAREAEQA-GADYL 126
>sp|Q8KD79|THIE_CHLTE Thiamine-phosphate synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=thiE PE=3 SV=1
Length = 204
Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAVN 158
+ ++L A+ G+V L ASG+ +YE A ++++ ++ ALF++ +RVDIA AV+
Sbjct: 17 NPVELARMALQGGAGMVQLRRKTASGQELYEWAIRIQALCSEQQALFIVNDRVDIAMAVH 76
Query: 159 ASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG 218
A GV L Q LPA AR + ++++ V + + AA +S G + F
Sbjct: 77 ADGVHLGQQDLPASAARALLA---PDAIIGVSVSNATEAIKAAEEGASYIGVGHIFPTFS 133
Query: 219 EGQKADVIENSLFTNV----KIPIFIMNASPLVDVSKFLKSGASGFVI 262
+ + ++ + + + ++P+ + + ++ +++GASG +
Sbjct: 134 KDKPSEPLGTASIRPIGRAAQLPVIAIGGIGHDNAAEVIRAGASGIAV 181
>sp|Q8RI59|THIE_FUSNN Thiamine-phosphate synthase OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=thiE PE=3 SV=1
Length = 206
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAA 156
G D I+E++ V IV L S K Y+ A +K + K+ LF+I +R+DI A
Sbjct: 19 GKDFYKCIEESIKGGVKIVQLREKNISTKDFYKKALKVKEICKNYEVLFIINDRLDITQA 78
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL--V 214
V A GV L +P AR +KD L+G + ++ A A GAD++
Sbjct: 79 VEADGVHLGQSDMPIEKAREILKDKF-------LIGATARNIEEAEKAQLL-GADYIGSG 130
Query: 215 CCFGEGQK--ADVIE----NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268
FG K A +E + +VKIP+F + + +V G G V S+
Sbjct: 131 AIFGTSTKDNAKRLEMEDLKKIVNSVKIPVFAIGGININNVWMLKNIGLQG-VCSVS--- 186
Query: 269 LFNDGVLSQMFCANGTTN 286
G+LS+ C N
Sbjct: 187 ----GILSEKDCKKAVEN 200
>sp|Q18GX9|THIE_HALWD Thiamine-phosphate synthase OS=Haloquadratum walsbyi (strain DSM
16790) GN=thiE PE=3 SV=1
Length = 223
Score = 53.5 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAA 155
AG ++++ A+ + IV L E + + YE +++ + FL+ +RVD+AA
Sbjct: 17 AGRSTTEIVEAAIDGGIDIVQLREKETTARRRYEIGQTVRTQTAQAGVTFLVNDRVDLAA 76
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL-- 213
AVNA GV L D LP AR + ++GR+V T AA A GAD+L
Sbjct: 77 AVNADGVHLGDDDLPVTAAREVLGQD-------AIIGRSVSTPAAAQRAEDI-GADYLGV 128
Query: 214 VCCFGEGQKADVIEN---------SLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
+ G K E+ ++ V IP+ + + ++ +++GA G +
Sbjct: 129 GAVYPTGTKDVTAESAEIGPKTVTAITDAVSIPVIGIGGITPSNTTEVIRAGADGVAV 186
>sp|Q39PQ9|MNME_GEOMG tRNA modification GTPase MnmE OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=mnmE PE=3 SV=1
Length = 457
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 313 VAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGE 372
V F+ F D E ++ V +EA ++AS +EE+ D + + ++I G+
Sbjct: 175 VEAFIDFPDDE---VDPASRVEIEA--KAREASGRIEELLEGFDEGRVLRDGVSVLIAGK 229
Query: 373 YNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
N GKSS++N LL KR + V TT +I EE P
Sbjct: 230 PNVGKSSLLNTLLQEKRAIVTSVPGTTRDII---------EEVVNVRGLP---------- 270
Query: 432 PILKEMIIVDTPGT----NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
+ ++DT G +V+ Q RLT E +P+ADL+LFV+ RP + + + L
Sbjct: 271 -----LRMLDTAGIRETEDVVEQEGVRLTLEKIPQADLILFVLDGSRPFDDDDRMIL--A 323
Query: 488 QQWKKKVVFVLNKSDL 503
+++V+ V NKSDL
Sbjct: 324 ALAERRVIVVTNKSDL 339
>sp|A5CY46|MNME_PELTS tRNA modification GTPase MnmE OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=mnmE PE=3 SV=1
Length = 459
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 339 DVIKKASPLMEEVSLLI---DAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGV 394
D+++ L+EE+ ++ +A E VI+G N GKSS++NALL + R + +
Sbjct: 192 DILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNALLRENRAIVTDI 251
Query: 395 VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQR 454
TT +I +YI P + I+DT G +R
Sbjct: 252 PGTTRDIIE--------------------EYINIRGIP----LKIIDTAGLRETGDAVER 287
Query: 455 L----TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510
+ E V +ADLVL V+ A R LTE + + + KKV+F++NK+D+ +
Sbjct: 288 IGVEKAREAVEQADLVLLVLDAARGLTEEDYAIIE--KVGGKKVIFIVNKADVREKKISS 345
Query: 511 EEA 513
E A
Sbjct: 346 EGA 348
>sp|Q5WH87|THIE_BACSK Thiamine-phosphate synthase OS=Bacillus clausii (strain KSM-K16)
GN=thiE PE=3 SV=1
Length = 209
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAAA 156
G D +++++EA+ V I+ L +S K+V E A LK + D + F++ + +D+A A
Sbjct: 17 GRDVVEVMEEAIQGGVDIIQLRDKTSSKKAVLEKARRLKKLAADYGIPFIVNDHIDVALA 76
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC- 215
V+ASGV + LP R + ++G + L+ A A + GAD++
Sbjct: 77 VDASGVHVGQDDLPLPEVRKLLGPD-------KIIGVSTHKLEEALEAEKN-GADYIGVG 128
Query: 216 -CFGEGQKADVIE-------NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDL 267
F KADV++ + +V IP + +V + +++GA + E +
Sbjct: 129 PIFPTNSKADVVDPVTTAYIREVKEHVTIPFVAIGGIKRHNVREVIEAGAEAICVITEIV 188
Query: 268 SLFNDGVLSQMFCA 281
+ + SQ A
Sbjct: 189 AARDVKAASQALLA 202
>sp|Q746Q3|MNME_GEOSL tRNA modification GTPase MnmE OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=mnmE PE=3 SV=1
Length = 456
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 23/164 (14%)
Query: 341 IKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTN 399
++KA+ + E+ D + E ++I G+ N GKSS++N LL KR + V TT
Sbjct: 197 VRKAAETVGELIAGFDEGRVLREGVAVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTR 256
Query: 400 EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF 459
+I EE I LP ++ I DT +++ + RLT E
Sbjct: 257 DII---------EEVVN---------IRGLPLRMIDTAGIRDTE--DIVEKEGVRLTLEK 296
Query: 460 VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+P ADLVL VI RPL E + + L + K+++ V NK DL
Sbjct: 297 IPEADLVLLVIDGSRPLDEDDRMIL--SALAGKRLILVENKCDL 338
>sp|Q9UZQ5|THIE_PYRAB Thiamine-phosphate synthase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=thiE PE=3 SV=1
Length = 207
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 122 EASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180
+AS K +YE ++ + ++ ALF + +R+D+A AVNA GV L + +P VAR +
Sbjct: 41 DASTKEMYEVGKEIRRLTQEYDALFFVDDRIDVALAVNADGVQLGPEDMPIEVAREIAPN 100
Query: 181 SMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFGEGQKADV----IEN--SLFT 232
++G +V +L+ A A +GAD+L F K DV IE +
Sbjct: 101 L--------IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKRDVRVIRIEGLREIVE 151
Query: 233 NVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
V IP+ + + +V + L +G G +
Sbjct: 152 AVSIPVVAIGGINVENVKQVLSAGVDGIAV 181
>sp|Q5L4W4|DER_CHLAB GTPase Der OS=Chlamydophila abortus (strain S26/3) GN=der PE=3 SV=1
Length = 474
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420
D+P + ++G N GKSS+INALL +R + D V TT + + +S H
Sbjct: 209 DKPLKIALIGRPNVGKSSIINALLNEERCIIDNVPGTTRDNIDILYS------------H 256
Query: 421 PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
D Y+ ++ + L++M V N I TE+ + RAD+ L VI A L+ +
Sbjct: 257 NDRSYL-FIDTAGLRKMKSV----KNSIEWISSSRTEKAIARADICLLVIDATHHLSSYD 311
Query: 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522
L + KK + ++NK DL + +E I ++ M
Sbjct: 312 KRILSLISKQKKPHIILVNKWDLIE-GVRMEHYIRDLRATDM 352
>sp|Q821L7|DER_CHLCV GTPase Der OS=Chlamydophila caviae (strain GPIC) GN=der PE=3 SV=1
Length = 474
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFS 407
EE + S D+P + ++G N GKSS+IN LL +R + D V TT + + +S
Sbjct: 196 EEEEIPFSTTSAPDKPLKIALIGRPNVGKSSIINGLLNEERCIIDNVPGTTRDNVDILYS 255
Query: 408 DLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVL 467
H D Y+ ++ + L++M V N I TE+ + RAD+ L
Sbjct: 256 ------------HNDRSYL-FIDTAGLRKMKSV----KNSIEWISSSRTEKAIARADVCL 298
Query: 468 FVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
VI A L+ + L + KK + ++NK DL +
Sbjct: 299 LVIDAQHHLSSYDKRILSLISKHKKPHIILVNKWDLIE 336
>sp|A8IGE6|THIE_AZOC5 Thiamine-phosphate synthase OS=Azorhizobium caulinodans (strain
ATCC 43989 / DSM 5975 / ORS 571) GN=thiE PE=3 SV=2
Length = 212
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAAAVNAS 160
L+ ++EAVA V +V L EA G+++ E A L +++ + + +I +RVD+AAAV A
Sbjct: 24 LETVEEAVAGGVTLVQLRDPEAKGRALAEEARALIGLLRPKGIPLIINDRVDVAAAVGAE 83
Query: 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFG 218
GV L L AR + ++G +V +L+ +AS+ D++ C
Sbjct: 84 GVHLGQDDLDPAAARAILGPD-------AIIGLSVGSLE-ELSASNLGPVDYVGCGPINA 135
Query: 219 EGQKADV-----IENSLF--TNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
G K D IE F +++ +P+ + D +++GA+G +
Sbjct: 136 TGTKGDAGGAIGIEGFAFLRSHIALPMVGIGGLKAEDAEAVMQAGANGIAV 186
>sp|A1VZU7|MNME_CAMJJ tRNA modification GTPase MnmE OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=mnmE PE=3 SV=1
Length = 442
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 332 SVLLEAIDVI-KKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRY 389
S LLE I + ++ S +++E+ L + + E F + IVG+ N GKSS++NALL +R
Sbjct: 181 SDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERA 240
Query: 390 LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT---- 445
+ + TT + EE + H + I+DT G
Sbjct: 241 IVSDIAGTTRDTI---------EENFKLGTHL---------------LRIIDTAGIRESK 276
Query: 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
+VI Q L+++ + AD++L V A R + + KK+ ++LNKSDL +
Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL-E 335
Query: 506 NAFELEEAISFVKENTMK 523
N F+ + +F+K + K
Sbjct: 336 NVFKNTQNKNFIKLSAQK 353
>sp|Q9PNX9|MNME_CAMJE tRNA modification GTPase MnmE OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=mnmE PE=3 SV=1
Length = 442
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 332 SVLLEAIDVI-KKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRY 389
S LLE I + ++ S +++E+ L + + E F + IVG+ N GKSS++NALL +R
Sbjct: 181 SDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERA 240
Query: 390 LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT---- 445
+ + TT + EE + H + I+DT G
Sbjct: 241 IVSDIAGTTRDTI---------EENFKLGTHL---------------LRIIDTAGIRESK 276
Query: 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
+VI Q L+++ + AD++L V A R + + KK+ ++LNKSDL +
Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL-E 335
Query: 506 NAFELEEAISFVKENTMK 523
N F+ + +F+K + K
Sbjct: 336 NVFKNTQNKNFIKLSAQK 353
>sp|O84709|DER_CHLTR GTPase Der OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=der PE=3
SV=1
Length = 490
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 349 EEVSLLIDAVSQ------IDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEI 401
EE S L + V+Q +D P + ++G N GKSS+INALL +R + D TT
Sbjct: 205 EEASFLEELVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTR-- 262
Query: 402 TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQR 454
D + Y + KE + +DT G N +
Sbjct: 263 --------------------DNIDVAYTHNN--KEYVFIDTAGLRKTKSIKNSVEWMSSS 300
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
TE+ + R D+ L VI A + L+ + L ++KK V ++NK DL
Sbjct: 301 RTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDL 349
>sp|Q3KKZ1|DER_CHLTA GTPase Der OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC
VR-571B) GN=der PE=3 SV=1
Length = 490
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 349 EEVSLLIDAVSQ------IDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEI 401
EE S L + V+Q +D P + ++G N GKSS+INALL +R + D TT
Sbjct: 205 EEASFLEELVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTR-- 262
Query: 402 TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQR 454
D + Y + KE + +DT G N +
Sbjct: 263 --------------------DNIDVAYTHNN--KEYVFIDTAGLRKTKSIKNSVEWMSSS 300
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
TE+ + R D+ L VI A + L+ + L ++KK V ++NK DL
Sbjct: 301 RTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDL 349
>sp|B0BAF8|DER_CHLTB GTPase Der OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=der PE=3 SV=1
Length = 490
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 349 EEVSLLIDAVSQ------IDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEI 401
EE S L + V+Q +D P + ++G N GKSS+INALL +R + D TT
Sbjct: 205 EEASFLEELVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTR-- 262
Query: 402 TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQR 454
D + Y + KE + +DT G N +
Sbjct: 263 --------------------DNIDVAYTHNN--KEYVFIDTAGLRKTKSIKNSVEWMSSS 300
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
TE+ + R D+ L VI A + L+ + L ++KK V ++NK DL
Sbjct: 301 RTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDL 349
>sp|B0B8S9|DER_CHLT2 GTPase Der OS=Chlamydia trachomatis serovar L2 (strain 434/Bu /
ATCC VR-902B) GN=der PE=3 SV=1
Length = 490
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 349 EEVSLLIDAVSQ------IDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEI 401
EE S L + V+Q +D P + ++G N GKSS+INALL +R + D TT
Sbjct: 205 EEASFLEELVAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTR-- 262
Query: 402 TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQR 454
D + Y + KE + +DT G N +
Sbjct: 263 --------------------DNIDVAYTHNN--KEYVFIDTAGLRKTKSIKNSVEWMSSS 300
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
TE+ + R D+ L VI A + L+ + L ++KK V ++NK DL
Sbjct: 301 RTEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDL 349
>sp|Q893R0|THIE_CLOTE Thiamine-phosphate synthase OS=Clostridium tetani (strain
Massachusetts / E88) GN=thiE PE=3 SV=2
Length = 209
Score = 50.4 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 95 VLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDI 153
+L G D +++EA+ +V L S K YE A +K + + +I +RVDI
Sbjct: 18 ILKGRDLKKVLEEAILGGTTLVQLREKNVSSKEFYEIAKDIKVITDKYNIPLIINDRVDI 77
Query: 154 AAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL 213
A AVNA G+ + + LPA + R + + ++G + T++ A A +GAD+L
Sbjct: 78 ALAVNAEGIHIGQKDLPANIVRKIIGED-------KILGVSANTIEDALKA-QRDGADYL 129
Query: 214 --VCCFGEGQKADVIENSLFT------NVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
F K D S+ T V IPI + +V K ++ G +
Sbjct: 130 GVGAIFPTNSKKDAESTSIETLKEIKNAVNIPIVAIGGINENNVQKLKETNIDGIAV 186
>sp|Q5HUK3|MNME_CAMJR tRNA modification GTPase MnmE OS=Campylobacter jejuni (strain
RM1221) GN=mnmE PE=3 SV=1
Length = 442
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 332 SVLLEAIDVI-KKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRY 389
S LLE I + ++ S +++E+ L + + E F + IVG+ N GKSS++NALL +R
Sbjct: 181 SDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERA 240
Query: 390 LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT---- 445
+ + TT + EE + H + I+DT G
Sbjct: 241 IVSDIAGTTRDTI---------EESFKLGTHL---------------LRIIDTAGIRESK 276
Query: 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
+VI Q L+++ + AD++L V A R + + KK+ ++LNKSDL +
Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL-E 335
Query: 506 NAFELEEAISFVKENTMK 523
N F+ + +F+K + K
Sbjct: 336 NVFKNTQNKNFIKLSAQK 353
>sp|Q7NNK8|THIE_GLOVI Thiamine-phosphate synthase OS=Gloeobacter violaceus (strain PCC
7421) GN=thiE PE=3 SV=2
Length = 341
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 74 GGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAAC 133
GG R + + L PH L +++++ A+A + +V L EA ++V + A
Sbjct: 133 GGDLRTRLAAARLYLVTSPHPEL-----IEIVEHALAVGLPLVQLREKEAPARAVLDIAL 187
Query: 134 LLKSV-VKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVG 192
L+ V ++ ALF++ +RVD+A A A GV L + LP AR M + L+G
Sbjct: 188 RLRDVTLRHGALFIVNDRVDLALACGADGVHLGQEDLPLARARALMGPRL-------LIG 240
Query: 193 RNVQTLDAAFNASSSEGADFL 213
++ A + ++GAD+L
Sbjct: 241 QSTHA-PAEAQQAVADGADYL 260
>sp|Q256C5|DER_CHLFF GTPase Der OS=Chlamydophila felis (strain Fe/C-56) GN=der PE=3 SV=1
Length = 475
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFS 407
EE +L D+P + ++G N GKSS+IN LL +R + D + TT + + +S
Sbjct: 197 EEEEILFSKPPASDKPLKIALIGRPNVGKSSIINGLLNEERCIIDNIPGTTRDNVDILYS 256
Query: 408 DLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVL 467
H D Y+ ++ + L++M V N I TE+ + RAD+ L
Sbjct: 257 ------------HNDRSYL-FIDTAGLRKMKSV----KNSIEWISSSRTEKAIARADICL 299
Query: 468 FVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
VI A L+ + L + KK + + NK DL
Sbjct: 300 LVIDATHCLSSYDKRILSLISKHKKPHIILANKWDL 335
>sp|Q97LQ9|THIE_CLOAB Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thiE PE=3 SV=1
Length = 211
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 93 HQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERV 151
+VL D I+EA+ V +V L E S YE+A LK + + + +I +R+
Sbjct: 14 RKVLKERDLYKSIEEAIKGGVTLVQLREKEMSTLDFYESALKLKKITETYKIPLIINDRI 73
Query: 152 DIAAAVNASGVLLSDQGLPAIVARNTM-KDSMSESVVLPLVGRNVQTLDAAFNASSSE-- 208
DIA A+NA GV + +P I AR + KD ++G + +++ A A +
Sbjct: 74 DIALAINADGVHIGQSDMPLIKARELLGKD--------KIIGVSAHSIEEALEAERNGAT 125
Query: 209 ----GADFLVCCFGEGQKADVIE-NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGF-VI 262
GA + G+ Q + E ++ +VKIP+ + + +K +++G G VI
Sbjct: 126 YLGVGAIYNTSTKGDAQAVSLEELKNIKNSVKIPVVGIGGINEENANKVIETGVDGISVI 185
Query: 263 S 263
S
Sbjct: 186 S 186
>sp|A2CB21|THIE_PROM3 Thiamine-phosphate synthase OS=Prochlorococcus marinus (strain MIT
9303) GN=thiE PE=3 SV=1
Length = 353
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 74 GGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG-KSVYEAA 132
G +R +++ ++ L LA D + A+ + +V EAS + + +A
Sbjct: 142 GKKRRQQLQACHLCLITTSQSDLANNDLFRTVSAALVAGIDMVQYRNKEASDLQRLTQAK 201
Query: 133 CLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVG 192
L K ALF++ +R+D+A AV+A GV L LP VAR + L+G
Sbjct: 202 ELASLCRKHGALFIVNDRIDLALAVDADGVHLGQDDLPTDVARGLIGSER-------LLG 254
Query: 193 RNVQTLDAAFNASSSEGADFL 213
R+ Q L A + +EG D+L
Sbjct: 255 RSTQFL-AQLQKAEAEGCDYL 274
>sp|A6LSI6|DER_CLOB8 GTPase Der OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
8052) GN=der PE=3 SV=1
Length = 438
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 38/155 (24%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHP 421
DE + ++G+ N GKSS+IN LLG+ + +P T + S L +EE +
Sbjct: 174 DEYIRIAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDSI--DSHLETEEGK------ 225
Query: 422 DGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRADLVLFVI 470
I+VDT G L+R+ ++ EE + RAD+ + +I
Sbjct: 226 ---------------FILVDTAG----LRRKSKVKEEIERYSVIRTYAAIERADVCILMI 266
Query: 471 SADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
A +TE + + Y + +K ++ ++NK DL +
Sbjct: 267 DATEGITEQDEKIIGYAHELRKAIMVIVNKWDLVE 301
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ IVG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAIVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAEAEW 48
Query: 426 ICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ Y ++DT G ++I+++ +R + AD+++F++ LT ++
Sbjct: 49 LRY-------NFTMIDTGGIEPENNDIIIKQMRRQANIAIETADVIIFIVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSDLYQ---NAFEL 510
++ KK VV V+NK D + NA+E
Sbjct: 102 NEVATMLRKSKKPVVLVVNKVDNLKDENNAYEF 134
>sp|Q9Z762|DER_CHLPN GTPase Der OS=Chlamydia pneumoniae GN=der PE=3 SV=1
Length = 487
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEITFLRFS 407
EE + ++ Q + + ++G N GKSS+IN LL + R + D TT + + +S
Sbjct: 209 EEPCTIPESPQQAPKTLKIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYS 268
Query: 408 DLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVL 467
H D QY+ ++ + L++M V N I TE+ + RAD+ L
Sbjct: 269 ------------HKDRQYL-FIDTAGLRKMKSVK----NSIEWISSSRTEKAISRADICL 311
Query: 468 FVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
VI A + L+ E L + KK + ++NK DL +
Sbjct: 312 LVIDATQKLSSYEKRILSLISKRKKPHIILINKWDLLE 349
>sp|A8FM10|MNME_CAMJ8 tRNA modification GTPase MnmE OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=mnmE PE=3
SV=1
Length = 442
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 31/198 (15%)
Query: 332 SVLLEAIDVI-KKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRY 389
S LLE I + ++ S +++E+ L + + E F + IVG+ N GKSS++NALL +R
Sbjct: 181 SDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERA 240
Query: 390 LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT---- 445
+ + TT + EE + H + I+DT G
Sbjct: 241 IVSDIAGTTRDTI---------EESFKLGTHL---------------LRIIDTAGIRESK 276
Query: 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
+ I Q L+++ + AD++L V A R + + KK+ ++LNKSDL +
Sbjct: 277 DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL-E 335
Query: 506 NAFELEEAISFVKENTMK 523
N F+ + +F+K + K
Sbjct: 336 NVFKNTQNKNFIKLSAQK 353
>sp|Q7V8I3|THIE_PROMM Thiamine-phosphate synthase OS=Prochlorococcus marinus (strain MIT
9313) GN=thiE PE=3 SV=1
Length = 353
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 74 GGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG-KSVYEAA 132
G +R +++ ++ L L D L ++ A+ + +V EAS + + +A
Sbjct: 142 GKKRRQQLQDCHLCLITTSQSDLNSNDLLRTVNAALVAGIDMVQYRNKEASDLQRLTQAK 201
Query: 133 CLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVG 192
L K ALF++ +R+D+A AV+A GV L LP VAR + L+G
Sbjct: 202 ELASLCRKHGALFIVNDRIDLALAVDADGVHLGQDDLPTDVARRLIGSER-------LLG 254
Query: 193 RNVQTLDAAFNASSSEGADFL 213
R+ Q L A + +EG D+L
Sbjct: 255 RSTQFL-AQLQKAEAEGCDYL 274
>sp|O58878|THIE_PYRHO Thiamine-phosphate synthase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=thiE PE=3 SV=2
Length = 207
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 143 ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAF 202
ALF + +R+D+A AVNA GV L +P +AR + ++G +V +L+ A
Sbjct: 63 ALFFVDDRIDVALAVNADGVQLGPDDMPIEIAREIAPNL--------IIGASVYSLEEAL 114
Query: 203 NASSSEGADFLVC--CFGEGQKADV----IEN--SLFTNVKIPIFIMNASPLVDVSKFLK 254
A +GAD+L F K DV IE + VKIP+ + L +V + L
Sbjct: 115 EA-EMKGADYLGAGSVFPTQTKKDVKVIGIEGLREIVNAVKIPVVAIGGINLENVREVLL 173
Query: 255 SGASGF-----VISLEDLSLFNDGV 274
+G G V+ ED+ +G+
Sbjct: 174 TGVDGIAVVSAVMGTEDVKRATEGL 198
>sp|A7H372|MNME_CAMJD tRNA modification GTPase MnmE OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=mnmE PE=3
SV=1
Length = 442
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 31/198 (15%)
Query: 332 SVLLEAIDVI-KKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRY 389
S LLE I + ++ S +++E+ L + + E F + I+G+ N GKSS++NALL +R
Sbjct: 181 SDLLEKISTMCEENSKILKEIYTLSQSKKGLIEGFKIAIIGKPNVGKSSLLNALLSYERA 240
Query: 390 LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT---- 445
+ + TT + EE + H + I+DT G
Sbjct: 241 IVSDIAGTTRDTI---------EESFKLGTHL---------------LRIIDTAGIRESK 276
Query: 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
+ I Q L+++ + AD++L V A R + + KK+ ++LNKSDL +
Sbjct: 277 DTIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSDL-E 335
Query: 506 NAFELEEAISFVKENTMK 523
N F+ +F+K + K
Sbjct: 336 NVFKNTRNKNFIKLSAQK 353
>sp|Q0SS66|DER_CLOPS GTPase Der OS=Clostridium perfringens (strain SM101 / Type A)
GN=der PE=3 SV=1
Length = 438
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 38/148 (25%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ ++G+ N GKSS+IN LLG+ + VP T + + L +E DG++I
Sbjct: 179 IAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSY--LETE---------DGKFI 227
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRADLVLFVISADRP 475
+VDT G L+R+ ++ EE + +AD+ + VI A++
Sbjct: 228 ------------LVDTAG----LRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQG 271
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+TE + + Y + K ++ V+NK DL
Sbjct: 272 ITEQDEKIIGYAHEMNKAIMVVVNKWDL 299
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ +VG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAMVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAESEW 48
Query: 426 ICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ ++ ++DT G +++I+++ +R + + AD+++FV+ LT ++
Sbjct: 49 LN-------RKFTMIDTGGIEPESSDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSD---LYQNAFEL 510
+ ++ KK VV V+NK D L +N++E
Sbjct: 102 QEVAQMLRKSKKPVVLVVNKIDRLALEENSYEF 134
>sp|Q8XJK1|DER_CLOPE GTPase Der OS=Clostridium perfringens (strain 13 / Type A) GN=der
PE=3 SV=1
Length = 438
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 38/148 (25%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ ++G+ N GKSS+IN LLG+ + VP T + + L +E DG++I
Sbjct: 179 IAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSY--LETE---------DGKFI 227
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRADLVLFVISADRP 475
+VDT G L+R+ ++ EE + +AD+ + VI A++
Sbjct: 228 ------------LVDTAG----LRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQG 271
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+TE + + Y + K ++ V+NK DL
Sbjct: 272 ITEQDEKIIGYAHEMNKAIMVVVNKWDL 299
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ +VG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAMVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAESEW 48
Query: 426 ICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ ++ ++DT G +++I+++ +R + + AD+++FV+ LT ++
Sbjct: 49 LN-------RKFTMIDTGGIEPESSDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSD---LYQNAFEL 510
+ ++ KK VV V+NK D L +N++E
Sbjct: 102 QEVAQMLRKSKKPVVLVVNKIDRLALEENSYEF 134
>sp|Q0TPJ9|DER_CLOP1 GTPase Der OS=Clostridium perfringens (strain ATCC 13124 / NCTC
8237 / Type A) GN=der PE=3 SV=1
Length = 438
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 38/148 (25%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ ++G+ N GKSS+IN LLG+ + VP T + + L +E DG++I
Sbjct: 179 IAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSY--LETE---------DGKFI 227
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRADLVLFVISADRP 475
+VDT G L+R+ ++ EE + +AD+ + VI A++
Sbjct: 228 ------------LVDTAG----LRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQG 271
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+TE + + Y + K ++ V+NK DL
Sbjct: 272 ITEQDEKIIGYAHEMNKAIMVVVNKWDL 299
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ +VG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAMVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAESEW 48
Query: 426 ICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ ++ ++DT G +++I+++ +R + + AD+++FV+ LT ++
Sbjct: 49 LN-------RKFTMIDTGGIEPESSDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSD---LYQNAFEL 510
+ ++ KK VV V+NK D L +N++E
Sbjct: 102 QEVAQMLRKSKKPVVLVVNKIDRLALEENSYEF 134
>sp|B2TQ13|THIE_CLOBB Thiamine-phosphate synthase OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=thiE PE=3 SV=1
Length = 213
Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 103 DLIDEAVAKFV----GIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAAAV 157
+ ++EAV K + +V L E S YE A +K + + + +I +RVDIA AV
Sbjct: 21 NTLEEAVEKSILGGTTLVQLREKECSSHDFYETALNVKKITQKYNIPLIINDRVDIALAV 80
Query: 158 NASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL--VC 215
+A G+ + LPA V RN + + ++G + LD A A +GAD++
Sbjct: 81 DADGIHIGQSDLPATVVRNIIGED-------KILGVSAGNLDEALKA-QKDGADYIGVGA 132
Query: 216 CFGEGQKADVIENSL------FTNVKIPIFIM 241
+ G K D ++ V IP+ ++
Sbjct: 133 MYSTGTKKDATSTTMNELREIMKKVSIPVVVI 164
>sp|Q9PLM3|DER_CHLMU GTPase Der OS=Chlamydia muridarum (strain MoPn / Nigg) GN=der PE=3
SV=1
Length = 490
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 349 EEVSLLIDAVSQI------DEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTNEI 401
EE S L + V+Q + P + ++G N GKSS++NALL +R + D TT
Sbjct: 205 EEASFLEELVAQTTTPSISNRPLKVALIGHPNVGKSSIVNALLKEERCITDNSPGTTR-- 262
Query: 402 TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQR 454
D + Y + KE + +DT G N +
Sbjct: 263 --------------------DNVDVSYTYND--KEYVFIDTAGLRKAKSIKNSVEWMSSS 300
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
TE+ + RAD+ L VI A + L+ + L ++KK V ++NK DL
Sbjct: 301 RTEKAISRADICLLVIDATQQLSYQDKRILSLIARYKKPHVILVNKWDL 349
>sp|B8G2P9|DER_DESHD GTPase Der OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=der PE=3 SV=1
Length = 441
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 46/171 (26%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ +VG N GKSS++N LLG+ + +P T D A E +
Sbjct: 179 IAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI----DSAFEHEG----------- 223
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQR---LTEEF--------VPRADLVLFVISADRP 475
K II+DT G ++R+ R LTE++ V R+D++L ++ A
Sbjct: 224 --------KHYIIIDTAG----MRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEG 271
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDLYQ------NAFE--LEEAISFVK 518
+TE + Y + K +V V+NK DL + N FE + E + F++
Sbjct: 272 VTEQDKKIAGYAHEAGKGIVLVVNKWDLIEKDDKTMNRFEKDIREELGFMQ 322
>sp|Q24VA2|DER_DESHY GTPase Der OS=Desulfitobacterium hafniense (strain Y51) GN=der PE=3
SV=1
Length = 441
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 46/171 (26%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ +VG N GKSS++N LLG+ + +P T D A E +
Sbjct: 179 IAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI----DSAFEHEG----------- 223
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQR---LTEEF--------VPRADLVLFVISADRP 475
K II+DT G ++R+ R LTE++ V R+D++L ++ A
Sbjct: 224 --------KHYIIIDTAG----MRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEG 271
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDLYQ------NAFE--LEEAISFVK 518
+TE + Y + K +V V+NK DL + N FE + E + F++
Sbjct: 272 VTEQDKKIAGYAHEAGKGIVLVVNKWDLIEKDDKTMNRFEKDIREELGFMQ 322
>sp|Q8TMD6|THIE_METAC Thiamine-phosphate synthase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=thiE PE=3
SV=1
Length = 228
Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 96 LAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAA 155
L+ L + EAV IV S K + + A +K + DRA+FL+ +R+D+A
Sbjct: 31 LSKKGTLSDVREAVDAGCKIVQYREKNKSTKEMIDEASEIKRICGDRAIFLVNDRIDVAL 90
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADF--L 213
AV+A GV + +P +A+ + ++G V ++ A A + GAD+ L
Sbjct: 91 AVDADGVHIGQDDMPIEIAKKLLGPE-------KIIGLTVHNVEEALEAERN-GADYVGL 142
Query: 214 VCCFGEGQKADVIE-------NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFV 261
F K D + + +KIP+ + + +++GA FV
Sbjct: 143 GSIFDTSTKKDAGKGIGPASIKEVKNAIKIPVVAIGGINRENCIPVVENGADSFV 197
>sp|Q181S7|MNME_CLOD6 tRNA modification GTPase MnmE OS=Clostridium difficile (strain 630)
GN=mnmE PE=3 SV=1
Length = 459
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 32/165 (19%)
Query: 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPD 422
E VIVG+ N GKSS++N++LG+ +P T F ++
Sbjct: 220 EGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKG----------- 268
Query: 423 GQYICYLPSPILKEMIIVDTPG---TNVILQR--QQRLTEEFVPRADLVLFVISADRPLT 477
+P + IVDT G T+ I+++ ++ E F ADL++ V+ A R L+
Sbjct: 269 ------IP------LKIVDTAGIRDTDDIVEKIGVEKSKESFTS-ADLIVMVLDASRKLS 315
Query: 478 ESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522
E ++ L + K+ + +LNK+DL Q E E+ + +V+ N++
Sbjct: 316 EEDIEILEKLKD--KQTIVLLNKNDLKQE-IEEEKILKYVENNSI 357
>sp|B0TFW3|DER_HELMI GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=der PE=3 SV=1
Length = 442
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 351 VSLLIDAVSQIDEP--FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSD 408
V++L + + D+P + ++G N GKSS++NA+LG+ + +P T D
Sbjct: 162 VAVLPENNGEDDDPDTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAI----D 217
Query: 409 LASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF--------- 459
A + DG K I++DT G ++R+ R+ E
Sbjct: 218 TAFDR--------DG-----------KRYILIDTAG----MRRKGRIEEAVERYSVMRSL 254
Query: 460 --VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+ R+D+VL VI A + +TE + Y + K V VLNK DL
Sbjct: 255 RAIDRSDVVLMVIDASQGVTEQDKKIAGYAHEAGKACVLVLNKWDL 300
>sp|B2THQ9|DER_CLOBB GTPase Der OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=der PE=3 SV=1
Length = 438
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 38/159 (23%)
Query: 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ 415
DA ++ DE + ++G+ N GKSS+IN LLG+ L +V SD+A +
Sbjct: 168 DADAEEDEYIRIAMIGKPNVGKSSLINKLLGEERL---IV-----------SDVAGTTRD 213
Query: 416 RCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRAD 464
+ YL + K I++DT G L+R+ ++ EE + +AD
Sbjct: 214 AID--------SYLETEQGK-FILIDTAG----LRRKSKVKEEIERYSVIRTYASIEKAD 260
Query: 465 LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+ + +I A +TE + + Y + K ++ ++NK DL
Sbjct: 261 VCILMIDAQDGVTEQDEKIIGYAHELNKAIIVLVNKWDL 299
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ IVG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAIVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAEAEW 48
Query: 426 ICYLPSPILKEMIIVDTPGT-----NVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ Y ++DT G ++I+++ +R + AD+++F++ LT ++
Sbjct: 49 LNY-------NFTMIDTGGIEPTNDDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSD 502
++ KK VV V+NK D
Sbjct: 102 QEVANMLRKSKKPVVLVVNKID 123
>sp|Q2IM25|THIE_ANADE Thiamine-phosphate synthase OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=thiE PE=3 SV=1
Length = 222
Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 95 VLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIA 154
++ G D + A+ + + +A +V EA + ++ RAL L+ +R D+A
Sbjct: 22 IVGGADPVAQARAAIGGGARAIQVRMKDAPAGAVLEATRRILALATGRALVLVNDRADLA 81
Query: 155 AAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD 211
A GV L D LP AR + + LVGR +TL+ A A+ +EGAD
Sbjct: 82 LLAGADGVHLGDDDLPVPEARRLLGPDL-------LVGRTTRTLEEA-RAALAEGAD 130
>sp|B1GYZ9|MNME_UNCTG tRNA modification GTPase MnmE OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=mnmE PE=3 SV=2
Length = 456
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 32/145 (22%)
Query: 367 LVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
+VI+G+ N+GKSS++NA+LGK R + + TT + EE C
Sbjct: 220 VVIIGKPNAGKSSLLNAILGKNRAIVTDIAGTTTDTV---------EETIDC-------- 262
Query: 426 ICYLPSPILKEMIIVDTPGT-----NVILQRQQRLTEEFVPRADLV--LFVISADRPLTE 478
C +P +II DT G N+I Q T E V +AD++ LF S++ +
Sbjct: 263 -CGIP------LIITDTAGIREHSENLIEILGQAKTREAVCKADILIWLFDSSSEPDCND 315
Query: 479 SEVVFLRYTQQWKKKVVFVLNKSDL 503
+++ ++ VLNKSDL
Sbjct: 316 AKIADFLKKSDLNIPIICVLNKSDL 340
>sp|Q47R33|THIE_THEFY Thiamine-phosphate synthase OS=Thermobifida fusca (strain YX)
GN=thiE PE=3 SV=1
Length = 218
Score = 46.6 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR--ALFLIAERVDIAAA 156
GD + +D A+A V IV L + A +++ DR AL + +R DIA A
Sbjct: 25 GDLAEFLDAALAGGVDIVQLRDKTLDARDELAALEVVREAC-DRHGALLAVNDRADIAHA 83
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC 216
VNA + L + LP AR + D PL+GR+ + + A EG D+ C
Sbjct: 84 VNADVLHLGQRDLPVRYARAILGDR-------PLIGRSTNAAELSAAADREEGVDYF--C 134
Query: 217 FG 218
G
Sbjct: 135 IG 136
>sp|Q899S2|MNME_CLOTE tRNA modification GTPase MnmE OS=Clostridium tetani (strain
Massachusetts / E88) GN=mnmE PE=3 SV=1
Length = 459
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 340 VIKKASPLMEEVSLLIDAVSQ---IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396
V +K ++EE+ L+D + I E +VIVG+ N GKSS++NALL ++ +P
Sbjct: 196 VQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNVGKSSLLNALLSEKRAIVTEIP 255
Query: 397 TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRL- 455
T R +YI PI I+DT G +++
Sbjct: 256 GTT-------------------RDVIEEYINLDGIPIK----IIDTAGIRETEDLVEKIG 292
Query: 456 ---TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
++E + ADLV+ V+ + L + + + Y + KK + +LNKSDL
Sbjct: 293 VERSKEKINEADLVILVLDSSNKLNDEDYEIIEYIKD--KKYITLLNKSDL 341
>sp|Q8U192|THIE_PYRFU Thiamine-phosphate synthase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=thiE PE=1 SV=1
Length = 207
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 123 ASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDS 181
A + +YE L+ + ++ ALF + +RVD+A AV+A GV L + +P VA+ +
Sbjct: 42 APTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLGPEDMPIEVAKEIAPNL 101
Query: 182 MSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFGEGQKADV----IEN--SLFTN 233
++G +V +L+ A A +GAD+L F K D +E + +
Sbjct: 102 --------IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES 152
Query: 234 VKIPIFIMNASPLVDVSKFLKSGASGFVI 262
VKIP+ + + + LK+G G +
Sbjct: 153 VKIPVVAIGGINKDNAREVLKTGVDGIAV 181
>sp|B2V3Z1|DER_CLOBA GTPase Der OS=Clostridium botulinum (strain Alaska E43 / Type E3)
GN=der PE=3 SV=1
Length = 438
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 38/159 (23%)
Query: 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ 415
DA ++ DE + ++G+ N GKSS+IN LLG+ L +V SD+A +
Sbjct: 168 DADAEDDEYIRIAMIGKPNVGKSSLINKLLGEERL---IV-----------SDVAGTTRD 213
Query: 416 RCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF-----------VPRAD 464
+ YL + K I++DT G L+R+ ++ EE + +AD
Sbjct: 214 AID--------SYLETEQGK-FILIDTAG----LRRKSKVKEEIERYSVIRTYASIEKAD 260
Query: 465 LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+ + +I A +TE + + Y + K ++ ++NK DL
Sbjct: 261 VCILMIDAQDGVTEQDEKIIGYAHELNKAIMVLVNKWDL 299
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ IVG N GKS++ N L GKR +V T +T R + + ++
Sbjct: 5 IVAIVGRPNVGKSTLFNKLAGKRI---SIVQDTPGVT-------------RDRVYAEAEW 48
Query: 426 ICYLPSPILKEMIIVDTPGT-----NVILQRQQRLTEEFVPRADLVLFVISADRPLTESE 480
+ Y ++DT G ++I+++ +R + AD+++F++ LT ++
Sbjct: 49 LNY-------NFTMIDTGGIEPTNDDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAAD 101
Query: 481 VVFLRYTQQWKKKVVFVLNKSD 502
++ KK VV V+NK D
Sbjct: 102 QEVANMLRKSKKPVVLVVNKID 123
>sp|Q2RGI8|THIE_MOOTA Thiamine-phosphate synthase OS=Moorella thermoacetica (strain ATCC
39073) GN=thiE PE=3 SV=1
Length = 210
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 96 LAGG-DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDI 153
L GG L+L+ A+A + L E + + E ++ + +D A F++ +R+DI
Sbjct: 14 LGGGRPTLELVRGALAGGATAIQLREKELPARELVELGRAIRELTRDAGATFIVNDRLDI 73
Query: 154 AAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL 213
A AV A G+ + + LPA VAR + ++G + T D A A +GAD+L
Sbjct: 74 ALAVEADGLHIGQEDLPAPVARKLLGPE-------KILGVSAGTTDEARQA-EVDGADYL 125
Query: 214 VC--CFGEGQKADV-----IE--NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
F G K D +E ++ VKIPI + + + + +GA G +
Sbjct: 126 GVGSIFATGSKGDAGSPIGLEGLRAIRAAVKIPIVGIGGINPDNAAGVIAAGADGVSV 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,841,282
Number of Sequences: 539616
Number of extensions: 13806385
Number of successful extensions: 53208
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 945
Number of HSP's that attempted gapping in prelim test: 51664
Number of HSP's gapped (non-prelim): 2133
length of query: 921
length of database: 191,569,459
effective HSP length: 127
effective length of query: 794
effective length of database: 123,038,227
effective search space: 97692352238
effective search space used: 97692352238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)