Query 002437
Match_columns 921
No_of_seqs 673 out of 5186
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 23:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0448 Mitofusin 1 GTPase, in 100.0 4.2E-43 9.1E-48 392.2 41.9 533 363-919 108-735 (749)
2 PRK02615 thiamine-phosphate py 100.0 5.9E-46 1.3E-50 404.7 15.4 250 4-269 51-328 (347)
3 COG0352 ThiE Thiamine monophos 100.0 5.9E-38 1.3E-42 318.1 18.9 176 86-269 6-192 (211)
4 PRK06512 thiamine-phosphate py 100.0 2.3E-35 5.1E-40 305.5 19.3 177 85-269 12-198 (221)
5 PF02581 TMP-TENI: Thiamine mo 100.0 5.6E-35 1.2E-39 296.1 17.7 170 88-265 1-179 (180)
6 PRK12290 thiE thiamine-phospha 100.0 8.8E-33 1.9E-37 303.7 19.1 171 85-270 210-399 (437)
7 PRK03512 thiamine-phosphate py 100.0 1.7E-32 3.7E-37 282.7 19.8 168 87-269 14-192 (211)
8 PRK08999 hypothetical protein; 100.0 2E-32 4.3E-37 303.1 18.3 193 63-266 107-311 (312)
9 PLN02898 HMP-P kinase/thiamin- 100.0 2.9E-28 6.2E-33 285.8 19.1 177 85-269 290-481 (502)
10 TIGR00693 thiE thiamine-phosph 100.0 6.2E-28 1.3E-32 248.9 19.1 175 87-269 1-186 (196)
11 PRK09866 hypothetical protein; 99.9 1.7E-24 3.6E-29 245.3 42.2 323 330-671 47-494 (741)
12 PRK07695 transcriptional regul 99.9 6.6E-27 1.4E-31 241.7 19.0 173 86-268 2-182 (201)
13 PRK09517 multifunctional thiam 99.9 8.6E-27 1.9E-31 283.7 22.7 176 86-269 4-200 (755)
14 PRK00043 thiE thiamine-phospha 99.9 1.5E-23 3.3E-28 219.2 19.7 176 83-268 6-193 (212)
15 cd00564 TMP_TenI Thiamine mono 99.9 7E-22 1.5E-26 203.8 19.2 174 88-269 1-184 (196)
16 PRK07455 keto-hydroxyglutarate 99.9 9.9E-22 2.2E-26 199.1 12.9 159 99-268 24-185 (187)
17 COG2262 HflX GTPases [General 99.9 2.4E-20 5.3E-25 201.6 20.5 313 197-583 21-357 (411)
18 TIGR03156 GTP_HflX GTP-binding 99.8 6.3E-20 1.4E-24 204.4 22.2 227 289-580 115-350 (351)
19 COG1159 Era GTPase [General fu 99.8 3.1E-19 6.8E-24 186.2 18.8 166 366-588 8-178 (298)
20 PRK11058 GTPase HflX; Provisio 99.8 7.8E-19 1.7E-23 199.9 22.2 232 289-582 123-362 (426)
21 PF04799 Fzo_mitofusin: fzo-li 99.8 1.4E-20 3.1E-25 180.3 6.7 133 787-919 12-157 (171)
22 PF02421 FeoB_N: Ferrous iron 99.8 8E-20 1.7E-24 177.9 8.7 142 365-540 1-146 (156)
23 COG1160 Predicted GTPases [Gen 99.8 3.3E-17 7.2E-22 180.3 22.2 258 199-582 75-351 (444)
24 COG0486 ThdF Predicted GTPase 99.8 5.1E-17 1.1E-21 179.3 22.5 203 311-584 169-378 (454)
25 PLN02334 ribulose-phosphate 3- 99.8 2.5E-18 5.5E-23 181.2 10.7 174 88-269 7-208 (229)
26 cd01878 HflX HflX subfamily. 99.7 6.7E-17 1.4E-21 167.9 20.7 193 325-580 2-203 (204)
27 PRK05291 trmE tRNA modificatio 99.7 9.2E-17 2E-21 185.3 23.9 200 311-583 167-371 (449)
28 COG1160 Predicted GTPases [Gen 99.7 3.8E-17 8.2E-22 179.9 15.2 155 365-581 4-164 (444)
29 PF00350 Dynamin_N: Dynamin fa 99.7 1.8E-17 3.8E-22 166.6 10.6 135 367-501 1-168 (168)
30 TIGR00436 era GTP-binding prot 99.7 1.5E-16 3.2E-21 172.5 17.9 161 366-585 2-167 (270)
31 COG0218 Predicted GTPase [Gene 99.7 4.7E-16 1E-20 154.3 18.9 164 363-582 23-197 (200)
32 PRK00089 era GTPase Era; Revie 99.7 3.2E-16 6.9E-21 172.2 19.4 163 365-583 6-172 (292)
33 PRK09140 2-dehydro-3-deoxy-6-p 99.7 2.8E-16 6E-21 161.5 13.0 153 98-268 21-184 (206)
34 cd04104 p47_IIGP_like p47 (47- 99.7 1.8E-15 3.9E-20 156.1 19.1 173 364-583 1-185 (197)
35 TIGR03598 GTPase_YsxC ribosome 99.7 1.6E-15 3.4E-20 154.2 18.2 149 362-540 16-175 (179)
36 PRK06806 fructose-bisphosphate 99.7 2.5E-16 5.4E-21 168.9 12.5 147 101-276 86-243 (281)
37 COG1084 Predicted GTPase [Gene 99.7 6.9E-16 1.5E-20 162.3 15.3 232 247-516 60-304 (346)
38 PF00009 GTP_EFTU: Elongation 99.7 1.6E-15 3.5E-20 155.4 17.9 183 363-582 2-187 (188)
39 cd04163 Era Era subfamily. Er 99.7 1.7E-15 3.7E-20 150.7 17.5 160 364-580 3-167 (168)
40 cd04171 SelB SelB subfamily. 99.7 3.3E-15 7.1E-20 148.9 18.6 147 365-540 1-151 (164)
41 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 2.9E-15 6.3E-20 150.1 17.7 163 365-581 1-165 (168)
42 cd01895 EngA2 EngA2 subfamily. 99.7 2.5E-15 5.4E-20 150.9 17.3 150 364-540 2-160 (174)
43 cd00881 GTP_translation_factor 99.7 2.2E-15 4.7E-20 154.0 16.7 177 366-582 1-187 (189)
44 PRK15494 era GTPase Era; Provi 99.7 3.3E-15 7.2E-20 166.5 18.9 163 363-584 51-218 (339)
45 COG0370 FeoB Fe2+ transport sy 99.6 2.1E-15 4.5E-20 173.4 17.5 143 364-540 3-149 (653)
46 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.7E-15 2.1E-19 167.5 23.1 182 311-539 159-345 (442)
47 cd01897 NOG NOG1 is a nucleola 99.6 3.1E-15 6.8E-20 150.0 16.2 157 365-581 1-167 (168)
48 cd01884 EF_Tu EF-Tu subfamily. 99.6 6.7E-15 1.4E-19 151.0 18.8 167 364-542 2-170 (195)
49 TIGR03594 GTPase_EngA ribosome 99.6 4E-15 8.6E-20 172.7 18.8 166 363-582 171-344 (429)
50 cd01894 EngA1 EngA1 subfamily. 99.6 2.2E-15 4.8E-20 148.8 14.1 151 368-580 1-156 (157)
51 cd00405 PRAI Phosphoribosylant 99.6 1.2E-15 2.5E-20 158.1 12.3 160 103-269 10-187 (203)
52 cd01898 Obg Obg subfamily. Th 99.6 2.4E-15 5.1E-20 151.1 13.9 158 366-580 2-169 (170)
53 PF05049 IIGP: Interferon-indu 99.6 6.3E-14 1.4E-18 154.2 25.3 169 363-583 34-219 (376)
54 PRK00093 GTP-binding protein D 99.6 1E-14 2.2E-19 169.5 19.5 165 363-582 172-344 (435)
55 PRK00454 engB GTP-binding prot 99.6 2.4E-14 5.2E-19 147.6 19.8 162 362-582 22-194 (196)
56 cd01889 SelB_euk SelB subfamil 99.6 1.3E-14 2.9E-19 149.1 17.3 176 365-582 1-186 (192)
57 PRK03003 GTP-binding protein D 99.6 2.2E-14 4.9E-19 167.4 21.3 165 363-582 210-382 (472)
58 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.1E-14 2.4E-19 143.7 15.3 150 365-581 2-156 (157)
59 COG3596 Predicted GTPase [Gene 99.6 1.4E-13 3E-18 141.8 22.7 169 363-582 38-222 (296)
60 PRK09554 feoB ferrous iron tra 99.6 4.9E-14 1.1E-18 171.1 22.7 143 364-540 3-153 (772)
61 KOG1954 Endocytosis/signaling 99.6 3.7E-13 7.9E-18 141.9 25.7 177 360-537 54-256 (532)
62 PRK12299 obgE GTPase CgtA; Rev 99.6 2.5E-14 5.4E-19 158.3 18.2 161 365-582 159-328 (335)
63 PRK12298 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.1E-19 162.3 17.0 163 365-583 160-334 (390)
64 PF01926 MMR_HSR1: 50S ribosom 99.6 9.7E-15 2.1E-19 137.2 12.1 110 366-500 1-116 (116)
65 cd00452 KDPG_aldolase KDPG and 99.6 6.3E-15 1.4E-19 150.8 11.5 155 98-267 15-175 (190)
66 KOG0410 Predicted GTP binding 99.6 7.7E-15 1.7E-19 152.6 11.9 203 314-585 129-344 (410)
67 cd00880 Era_like Era (E. coli 99.6 5.3E-14 1.1E-18 138.4 16.3 145 369-540 1-149 (163)
68 cd01879 FeoB Ferrous iron tran 99.6 2.4E-14 5.1E-19 141.8 13.5 151 369-580 1-155 (158)
69 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.2E-14 1.1E-18 145.2 16.0 170 366-583 2-185 (196)
70 PRK03003 GTP-binding protein D 99.6 4.8E-14 1E-18 164.6 17.3 144 362-540 36-184 (472)
71 cd01891 TypA_BipA TypA (tyrosi 99.6 1.4E-13 3.1E-18 141.7 18.1 183 365-581 3-191 (194)
72 PRK09518 bifunctional cytidyla 99.6 8E-14 1.7E-18 170.3 18.9 165 363-582 449-621 (712)
73 cd01861 Rab6 Rab6 subfamily. 99.5 1.2E-13 2.6E-18 137.4 16.8 154 365-580 1-160 (161)
74 cd01890 LepA LepA subfamily. 99.5 9.6E-14 2.1E-18 140.8 16.3 109 436-581 68-176 (179)
75 TIGR03594 GTPase_EngA ribosome 99.5 6.1E-14 1.3E-18 162.8 16.6 140 366-540 1-145 (429)
76 TIGR02528 EutP ethanolamine ut 99.5 5.6E-14 1.2E-18 136.9 13.6 129 366-540 2-130 (142)
77 PRK00093 GTP-binding protein D 99.5 7.5E-14 1.6E-18 162.2 17.0 141 365-540 2-147 (435)
78 cd01868 Rab11_like Rab11-like. 99.5 9.1E-14 2E-18 139.0 15.4 142 364-540 3-150 (165)
79 PRK12297 obgE GTPase CgtA; Rev 99.5 5.8E-14 1.3E-18 159.0 15.5 158 365-583 159-328 (424)
80 PRK04213 GTP-binding protein; 99.5 1.9E-13 4E-18 141.7 18.0 146 363-540 8-178 (201)
81 cd04136 Rap_like Rap-like subf 99.5 8.5E-14 1.8E-18 138.7 14.9 142 365-540 2-148 (163)
82 TIGR02729 Obg_CgtA Obg family 99.5 7.2E-14 1.6E-18 154.5 15.6 160 364-581 157-328 (329)
83 cd01876 YihA_EngB The YihA (En 99.5 2.7E-13 5.8E-18 135.3 18.4 157 367-580 2-169 (170)
84 KOG1423 Ras-like GTPase ERA [C 99.5 3.7E-14 8.1E-19 146.6 12.3 169 363-582 71-271 (379)
85 cd04119 RJL RJL (RabJ-Like) su 99.5 1.6E-13 3.5E-18 137.1 16.7 156 365-582 1-167 (168)
86 cd04166 CysN_ATPS CysN_ATPS su 99.5 9.1E-14 2E-18 144.7 15.3 167 366-540 1-179 (208)
87 PRK15467 ethanolamine utilizat 99.5 1.2E-13 2.5E-18 137.4 15.2 145 366-582 3-147 (158)
88 cd04124 RabL2 RabL2 subfamily. 99.5 1.6E-13 3.5E-18 136.8 16.3 155 365-582 1-158 (161)
89 PRK12296 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.4E-18 158.5 16.8 160 364-582 159-340 (500)
90 cd01864 Rab19 Rab19 subfamily. 99.5 1.7E-13 3.7E-18 137.1 16.0 143 364-540 3-151 (165)
91 cd04138 H_N_K_Ras_like H-Ras/N 99.5 2.5E-13 5.3E-18 134.9 17.0 141 365-540 2-147 (162)
92 cd01865 Rab3 Rab3 subfamily. 99.5 2E-13 4.3E-18 136.7 16.4 156 365-582 2-163 (165)
93 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.8E-13 3.8E-18 137.1 15.9 142 364-540 2-149 (166)
94 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.3E-13 2.9E-18 138.0 14.8 143 366-540 1-154 (167)
95 cd01866 Rab2 Rab2 subfamily. 99.5 2.8E-13 6E-18 136.1 17.1 143 364-540 4-151 (168)
96 smart00175 RAB Rab subfamily o 99.5 2.4E-13 5.2E-18 135.5 16.5 156 365-582 1-162 (164)
97 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.8E-13 4E-18 136.4 15.6 142 364-540 2-149 (164)
98 cd04142 RRP22 RRP22 subfamily. 99.5 2.6E-13 5.6E-18 140.0 17.1 164 365-583 1-175 (198)
99 cd04157 Arl6 Arl6 subfamily. 99.5 1.5E-13 3.3E-18 136.7 14.9 142 366-540 1-149 (162)
100 cd01863 Rab18 Rab18 subfamily. 99.5 2.6E-13 5.7E-18 135.0 16.5 139 365-540 1-147 (161)
101 cd00154 Rab Rab family. Rab G 99.5 2.8E-13 6E-18 133.5 16.1 141 365-540 1-147 (159)
102 cd04154 Arl2 Arl2 subfamily. 99.5 3.4E-13 7.4E-18 136.2 17.0 144 362-540 12-160 (173)
103 cd04140 ARHI_like ARHI subfami 99.5 2.5E-13 5.3E-18 136.0 15.8 141 365-540 2-150 (165)
104 cd01862 Rab7 Rab7 subfamily. 99.5 3.4E-13 7.3E-18 135.6 16.8 157 365-582 1-167 (172)
105 cd01867 Rab8_Rab10_Rab13_like 99.5 2.9E-13 6.3E-18 135.8 16.3 154 364-581 3-164 (167)
106 smart00053 DYNc Dynamin, GTPas 99.5 2.9E-13 6.3E-18 142.0 16.8 146 363-508 25-209 (240)
107 smart00173 RAS Ras subfamily o 99.5 2.1E-13 4.5E-18 136.1 15.1 156 365-582 1-162 (164)
108 cd01893 Miro1 Miro1 subfamily. 99.5 4.6E-13 1E-17 134.2 17.3 157 366-582 2-164 (166)
109 cd04113 Rab4 Rab4 subfamily. 99.5 2.7E-13 5.9E-18 134.9 15.4 142 365-540 1-147 (161)
110 cd01881 Obg_like The Obg-like 99.5 1.3E-13 2.9E-18 139.0 13.3 142 369-540 1-162 (176)
111 cd04118 Rab24 Rab24 subfamily. 99.5 2.4E-13 5.1E-18 139.9 14.9 162 365-582 1-166 (193)
112 TIGR00475 selB selenocysteine- 99.5 4.2E-13 9.1E-18 159.4 18.8 147 365-540 1-151 (581)
113 cd04165 GTPBP1_like GTPBP1-lik 99.5 6.8E-13 1.5E-17 139.1 18.1 114 435-580 84-221 (224)
114 cd04112 Rab26 Rab26 subfamily. 99.5 3.7E-13 7.9E-18 138.3 15.7 156 365-583 1-164 (191)
115 cd01860 Rab5_related Rab5-rela 99.5 6.3E-13 1.4E-17 132.5 17.0 139 365-540 2-148 (163)
116 cd04175 Rap1 Rap1 subgroup. T 99.5 2.9E-13 6.2E-18 135.3 14.2 141 365-540 2-148 (164)
117 cd04159 Arl10_like Arl10-like 99.5 5.6E-13 1.2E-17 131.5 15.8 140 367-540 2-146 (159)
118 PRK09518 bifunctional cytidyla 99.5 3E-13 6.6E-18 165.3 16.8 142 364-540 275-421 (712)
119 cd04150 Arf1_5_like Arf1-Arf5- 99.5 6.3E-13 1.4E-17 132.3 16.2 140 365-540 1-146 (159)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.5 4.9E-13 1.1E-17 132.6 15.3 140 366-540 1-145 (158)
121 cd04106 Rab23_lke Rab23-like s 99.5 4.5E-13 9.7E-18 133.4 15.0 143 365-540 1-148 (162)
122 cd04123 Rab21 Rab21 subfamily. 99.5 5.6E-13 1.2E-17 132.4 15.7 154 365-580 1-160 (162)
123 cd04122 Rab14 Rab14 subfamily. 99.5 8.8E-13 1.9E-17 132.1 16.9 141 365-540 3-149 (166)
124 smart00178 SAR Sar1p-like memb 99.5 5.7E-13 1.2E-17 136.0 15.8 145 362-540 15-170 (184)
125 cd04151 Arl1 Arl1 subfamily. 99.5 5.1E-13 1.1E-17 132.7 15.1 140 366-540 1-145 (158)
126 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 6.7E-13 1.5E-17 135.4 16.3 162 364-582 3-170 (183)
127 PRK10512 selenocysteinyl-tRNA- 99.5 8.5E-13 1.8E-17 157.2 19.5 147 365-540 1-151 (614)
128 cd04176 Rap2 Rap2 subgroup. T 99.5 4.2E-13 9.1E-18 133.9 14.2 141 365-540 2-148 (163)
129 PF10662 PduV-EutP: Ethanolami 99.5 3.8E-13 8.3E-18 128.1 13.0 141 366-579 3-143 (143)
130 CHL00071 tufA elongation facto 99.5 5.2E-13 1.1E-17 153.0 16.8 168 362-541 10-179 (409)
131 cd04158 ARD1 ARD1 subfamily. 99.5 4.9E-13 1.1E-17 134.5 14.7 157 366-583 1-162 (169)
132 cd04156 ARLTS1 ARLTS1 subfamil 99.5 6E-13 1.3E-17 132.2 15.1 141 366-540 1-147 (160)
133 PRK12736 elongation factor Tu; 99.5 9.5E-13 2.1E-17 150.1 18.7 191 361-582 9-201 (394)
134 cd04109 Rab28 Rab28 subfamily. 99.5 6.7E-13 1.4E-17 139.1 16.1 157 365-582 1-166 (215)
135 cd04114 Rab30 Rab30 subfamily. 99.5 8.8E-13 1.9E-17 132.3 16.2 144 363-540 6-154 (169)
136 cd04139 RalA_RalB RalA/RalB su 99.5 1.1E-12 2.4E-17 130.6 16.7 155 365-581 1-161 (164)
137 cd04101 RabL4 RabL4 (Rab-like4 99.5 1E-12 2.2E-17 131.2 16.3 144 366-540 2-149 (164)
138 cd04127 Rab27A Rab27a subfamil 99.5 8.8E-13 1.9E-17 133.9 16.0 164 364-581 4-176 (180)
139 PRK00049 elongation factor Tu; 99.5 1.2E-12 2.7E-17 149.1 18.9 192 362-582 10-203 (396)
140 cd01888 eIF2_gamma eIF2-gamma 99.5 1.3E-12 2.9E-17 135.5 17.5 116 435-583 83-200 (203)
141 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.1E-12 2.4E-17 135.9 16.7 156 365-582 1-168 (201)
142 cd04149 Arf6 Arf6 subfamily. 99.5 9.4E-13 2E-17 132.3 15.7 143 363-540 8-155 (168)
143 TIGR00487 IF-2 translation ini 99.5 9.8E-13 2.1E-17 155.5 18.2 148 363-540 86-235 (587)
144 cd04110 Rab35 Rab35 subfamily. 99.5 1.3E-12 2.8E-17 135.1 16.8 158 363-582 5-167 (199)
145 PRK12735 elongation factor Tu; 99.5 1.3E-12 2.9E-17 149.0 18.4 193 360-582 8-203 (396)
146 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.2E-12 2.7E-17 132.3 16.0 143 363-540 14-161 (174)
147 TIGR00491 aIF-2 translation in 99.5 1.5E-12 3.2E-17 153.6 19.1 133 363-505 3-135 (590)
148 cd04116 Rab9 Rab9 subfamily. 99.5 1.6E-12 3.5E-17 130.6 16.8 144 363-540 4-156 (170)
149 smart00177 ARF ARF-like small 99.5 1.4E-12 3.1E-17 131.9 16.5 156 363-581 12-173 (175)
150 cd04144 Ras2 Ras2 subfamily. 99.5 7.5E-13 1.6E-17 135.9 14.5 140 366-540 1-148 (190)
151 cd01886 EF-G Elongation factor 99.5 5.7E-13 1.2E-17 143.5 14.1 161 366-541 1-161 (270)
152 cd01874 Cdc42 Cdc42 subfamily. 99.5 7.7E-13 1.7E-17 133.9 14.2 149 365-540 2-160 (175)
153 cd00877 Ran Ran (Ras-related n 99.5 7.1E-13 1.5E-17 132.9 13.6 155 365-582 1-159 (166)
154 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.5E-12 3.3E-17 131.1 15.9 158 366-582 2-165 (170)
155 cd04132 Rho4_like Rho4-like su 99.5 1.2E-12 2.7E-17 133.8 15.5 163 365-582 1-167 (187)
156 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.6E-12 3.5E-17 131.2 16.0 142 364-540 2-149 (172)
157 cd00157 Rho Rho (Ras homology) 99.4 9.7E-13 2.1E-17 132.2 14.2 147 365-540 1-158 (171)
158 cd01853 Toc34_like Toc34-like 99.4 4.1E-12 8.9E-17 134.9 19.6 175 360-566 27-228 (249)
159 cd04155 Arl3 Arl3 subfamily. 99.4 2.1E-12 4.5E-17 130.2 16.4 146 360-540 10-160 (173)
160 cd04125 RabA_like RabA-like su 99.4 1.9E-12 4.1E-17 132.6 16.3 141 365-540 1-147 (188)
161 cd00876 Ras Ras family. The R 99.4 1.3E-12 2.9E-17 129.3 14.6 140 366-540 1-146 (160)
162 cd01871 Rac1_like Rac1-like su 99.4 1.9E-12 4E-17 131.0 15.8 147 365-540 2-160 (174)
163 smart00174 RHO Rho (Ras homolo 99.4 1.1E-12 2.3E-17 132.4 14.1 159 367-581 1-171 (174)
164 PLN03110 Rab GTPase; Provision 99.4 2.2E-12 4.8E-17 135.2 16.7 144 363-540 11-159 (216)
165 PLN03127 Elongation factor Tu; 99.4 2.5E-12 5.5E-17 147.9 18.7 168 362-541 59-228 (447)
166 PTZ00369 Ras-like protein; Pro 99.4 1.9E-12 4.2E-17 132.7 15.9 143 363-540 4-152 (189)
167 cd04111 Rab39 Rab39 subfamily. 99.4 1.8E-12 4E-17 135.2 16.0 143 364-540 2-151 (211)
168 PTZ00133 ADP-ribosylation fact 99.4 2.6E-12 5.7E-17 130.9 16.6 158 363-582 16-178 (182)
169 cd04126 Rab20 Rab20 subfamily. 99.4 2.4E-12 5.2E-17 134.5 16.4 110 365-505 1-114 (220)
170 PLN00223 ADP-ribosylation fact 99.4 3.5E-12 7.5E-17 129.8 17.1 158 363-582 16-178 (181)
171 PRK05306 infB translation init 99.4 1.4E-12 3.1E-17 157.4 16.7 148 362-540 288-437 (787)
172 CHL00189 infB translation init 99.4 1.9E-12 4E-17 155.0 17.2 152 362-540 242-395 (742)
173 cd04161 Arl2l1_Arl13_like Arl2 99.4 2.3E-12 4.9E-17 129.4 15.3 141 366-540 1-148 (167)
174 cd01892 Miro2 Miro2 subfamily. 99.4 1.4E-12 3E-17 131.2 13.7 157 363-581 3-165 (169)
175 cd04143 Rhes_like Rhes_like su 99.4 2.3E-12 5E-17 137.3 15.9 156 365-581 1-170 (247)
176 PLN03126 Elongation factor Tu; 99.4 3.3E-12 7.1E-17 147.7 17.9 169 362-542 79-249 (478)
177 cd01883 EF1_alpha Eukaryotic e 99.4 2.4E-12 5.2E-17 135.2 15.4 169 366-542 1-192 (219)
178 cd04120 Rab12 Rab12 subfamily. 99.4 3.4E-12 7.4E-17 131.8 16.2 142 366-540 2-148 (202)
179 PLN03118 Rab family protein; P 99.4 3.8E-12 8.2E-17 133.0 16.8 157 363-582 13-177 (211)
180 cd00429 RPE Ribulose-5-phospha 99.4 3.9E-13 8.4E-18 140.4 9.3 162 100-269 13-200 (211)
181 cd04117 Rab15 Rab15 subfamily. 99.4 3.9E-12 8.4E-17 126.9 15.9 142 365-540 1-147 (161)
182 TIGR00437 feoB ferrous iron tr 99.4 3.3E-12 7.2E-17 151.9 17.7 150 371-581 1-154 (591)
183 cd00879 Sar1 Sar1 subfamily. 99.4 3.3E-12 7.1E-17 131.0 15.5 145 362-540 17-176 (190)
184 cd01885 EF2 EF2 (for archaea a 99.4 5.6E-12 1.2E-16 131.6 17.3 130 366-504 2-138 (222)
185 cd04121 Rab40 Rab40 subfamily. 99.4 4.8E-12 1E-16 129.5 16.5 145 362-540 4-152 (189)
186 cd04147 Ras_dva Ras-dva subfam 99.4 3E-12 6.6E-17 132.3 15.2 158 366-582 1-163 (198)
187 cd04128 Spg1 Spg1p. Spg1p (se 99.4 6.9E-12 1.5E-16 127.7 17.5 157 365-582 1-166 (182)
188 cd01875 RhoG RhoG subfamily. 99.4 4.9E-12 1.1E-16 129.9 16.4 166 364-583 3-178 (191)
189 TIGR00485 EF-Tu translation el 99.4 4.2E-12 9E-17 145.1 17.5 168 361-540 9-178 (394)
190 cd04148 RGK RGK subfamily. Th 99.4 3.1E-12 6.7E-17 134.5 15.1 153 365-582 1-163 (221)
191 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4.5E-12 9.8E-17 127.5 15.6 144 364-540 2-151 (170)
192 KOG1490 GTP-binding protein CR 99.4 8.8E-13 1.9E-17 144.5 10.9 240 265-540 73-326 (620)
193 cd04135 Tc10 TC10 subfamily. 99.4 3.1E-12 6.8E-17 129.0 14.0 147 365-540 1-159 (174)
194 KOG1191 Mitochondrial GTPase [ 99.4 1.8E-12 3.9E-17 142.7 13.0 124 359-506 263-404 (531)
195 cd04134 Rho3 Rho3 subfamily. 99.4 4.5E-12 9.8E-17 130.0 14.9 162 366-582 2-174 (189)
196 cd01870 RhoA_like RhoA-like su 99.4 7.4E-12 1.6E-16 126.4 16.2 147 365-540 2-160 (175)
197 PLN03071 GTP-binding nuclear p 99.4 6.6E-12 1.4E-16 131.8 16.2 142 363-540 12-157 (219)
198 PRK13585 1-(5-phosphoribosyl)- 99.4 1.6E-12 3.4E-17 138.7 11.6 163 100-269 33-228 (241)
199 cd04177 RSR1 RSR1 subgroup. R 99.4 5.1E-12 1.1E-16 126.9 14.6 142 365-540 2-149 (168)
200 cd04146 RERG_RasL11_like RERG/ 99.4 2.1E-12 4.6E-17 129.2 11.7 141 366-540 1-148 (165)
201 PRK05506 bifunctional sulfate 99.4 4.4E-12 9.5E-17 153.4 16.6 172 362-541 22-207 (632)
202 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 5.9E-12 1.3E-16 126.0 14.8 141 367-540 2-145 (164)
203 cd00882 Ras_like_GTPase Ras-li 99.4 4.3E-12 9.4E-17 123.2 13.5 140 369-540 1-145 (157)
204 PRK05124 cysN sulfate adenylyl 99.4 5.6E-12 1.2E-16 146.5 16.7 173 362-541 25-211 (474)
205 cd04137 RheB Rheb (Ras Homolog 99.4 5.3E-12 1.1E-16 128.2 14.7 141 365-540 2-148 (180)
206 PRK12317 elongation factor 1-a 99.4 3.9E-12 8.4E-17 147.0 15.3 168 363-540 5-190 (425)
207 cd04167 Snu114p Snu114p subfam 99.4 9.1E-12 2E-16 130.3 16.7 169 366-540 2-188 (213)
208 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 9.5E-12 2.1E-16 126.5 16.2 116 363-505 4-123 (182)
209 cd04130 Wrch_1 Wrch-1 subfamil 99.4 4.2E-12 9.2E-17 128.2 13.5 115 365-506 1-119 (173)
210 KOG1489 Predicted GTP-binding 99.4 1.2E-12 2.7E-17 136.5 9.5 145 364-540 196-352 (366)
211 PLN03108 Rab family protein; P 99.4 1E-11 2.3E-16 129.5 16.5 141 363-540 5-153 (210)
212 cd04131 Rnd Rnd subfamily. Th 99.4 1.1E-11 2.4E-16 125.7 16.1 114 365-505 2-119 (178)
213 TIGR01859 fruc_bis_ald_ fructo 99.4 1.6E-12 3.5E-17 140.0 10.1 147 100-278 85-245 (282)
214 cd01850 CDC_Septin CDC/Septin. 99.4 1.1E-11 2.4E-16 134.2 16.4 148 364-537 4-184 (276)
215 TIGR01393 lepA GTP-binding pro 99.4 1.1E-11 2.4E-16 147.4 18.0 161 364-540 3-165 (595)
216 PRK04004 translation initiatio 99.4 1.6E-11 3.5E-16 145.6 19.1 131 363-504 5-136 (586)
217 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.1E-11 2.4E-16 130.3 15.6 115 364-505 13-131 (232)
218 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.4E-11 3.1E-16 129.6 16.4 145 361-540 36-181 (225)
219 PRK07315 fructose-bisphosphate 99.4 3E-12 6.5E-17 138.4 11.2 142 102-275 89-244 (293)
220 TIGR02034 CysN sulfate adenyly 99.4 9.5E-12 2.1E-16 142.4 15.9 169 365-541 1-183 (406)
221 TIGR00231 small_GTP small GTP- 99.3 8.9E-12 1.9E-16 122.4 13.3 140 365-540 2-149 (161)
222 cd04133 Rop_like Rop subfamily 99.3 1.6E-11 3.5E-16 124.1 15.2 114 365-505 2-119 (176)
223 PF04548 AIG1: AIG1 family; I 99.3 1.2E-11 2.5E-16 129.1 14.5 148 365-538 1-163 (212)
224 TIGR01394 TypA_BipA GTP-bindin 99.3 2E-11 4.3E-16 144.9 18.0 188 365-583 2-192 (594)
225 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 3.2E-11 6.9E-16 126.2 17.4 147 365-540 2-160 (222)
226 COG1163 DRG Predicted GTPase [ 99.3 2.3E-11 4.9E-16 127.8 15.5 90 364-477 63-155 (365)
227 PRK05581 ribulose-phosphate 3- 99.3 4.6E-12 9.9E-17 133.3 10.5 162 100-269 17-204 (220)
228 PRK09435 membrane ATPase/prote 99.3 2.7E-10 5.9E-15 125.1 24.6 218 323-583 13-261 (332)
229 PRK05433 GTP-binding protein L 99.3 3.4E-11 7.3E-16 143.5 18.9 178 363-583 6-185 (600)
230 cd01896 DRG The developmentall 99.3 2.1E-11 4.5E-16 129.0 15.2 86 366-475 2-90 (233)
231 PRK10218 GTP-binding protein; 99.3 2.7E-11 5.8E-16 143.5 17.3 165 363-541 4-171 (607)
232 KOG1145 Mitochondrial translat 99.3 2.8E-11 6.1E-16 134.2 15.5 148 362-540 151-301 (683)
233 cd04168 TetM_like Tet(M)-like 99.3 1.6E-11 3.5E-16 130.0 13.0 144 366-521 1-144 (237)
234 COG0532 InfB Translation initi 99.3 3.4E-11 7.3E-16 135.4 15.1 150 363-540 4-155 (509)
235 TIGR03680 eif2g_arch translati 99.3 4.9E-11 1.1E-15 136.7 16.8 114 436-582 81-196 (406)
236 PF00025 Arf: ADP-ribosylation 99.3 1.8E-11 4E-16 123.8 11.7 146 361-540 11-161 (175)
237 TIGR00991 3a0901s02IAP34 GTP-b 99.3 2.3E-10 5E-15 123.0 20.6 120 363-506 37-168 (313)
238 PRK07028 bifunctional hexulose 99.3 3.1E-11 6.8E-16 139.4 15.0 169 87-269 5-196 (430)
239 PRK04000 translation initiatio 99.3 6.3E-11 1.4E-15 135.6 17.2 184 361-582 6-201 (411)
240 TIGR00483 EF-1_alpha translati 99.3 3.6E-11 7.7E-16 139.0 15.2 171 363-541 6-193 (426)
241 PTZ00327 eukaryotic translatio 99.3 1E-10 2.2E-15 134.3 18.1 184 363-582 33-233 (460)
242 COG1703 ArgK Putative periplas 99.3 6.1E-10 1.3E-14 116.6 21.6 222 320-582 5-254 (323)
243 cd04170 EF-G_bact Elongation f 99.3 4.6E-11 1E-15 129.5 13.7 142 366-519 1-142 (268)
244 cd04129 Rho2 Rho2 subfamily. 99.2 3.8E-11 8.3E-16 122.9 11.7 161 365-582 2-173 (187)
245 cd04169 RF3 RF3 subfamily. Pe 99.2 1E-10 2.2E-15 126.1 15.3 132 365-506 3-138 (267)
246 KOG0073 GTP-binding ADP-ribosy 99.2 2.7E-10 5.8E-15 108.0 15.9 142 362-540 14-163 (185)
247 TIGR02836 spore_IV_A stage IV 99.2 1.2E-10 2.7E-15 127.0 15.2 158 357-539 10-219 (492)
248 PRK00007 elongation factor G; 99.2 7.2E-11 1.6E-15 144.0 14.8 164 363-541 9-172 (693)
249 PTZ00141 elongation factor 1- 99.2 1.2E-10 2.6E-15 134.4 15.5 169 363-540 6-198 (446)
250 smart00176 RAN Ran (Ras-relate 99.2 1.8E-10 3.9E-15 118.9 14.9 150 370-582 1-154 (200)
251 COG0536 Obg Predicted GTPase [ 99.2 9E-11 1.9E-15 124.5 12.3 162 366-583 161-334 (369)
252 cd04103 Centaurin_gamma Centau 99.2 1.8E-10 4E-15 114.4 13.9 139 365-540 1-144 (158)
253 cd01873 RhoBTB RhoBTB subfamil 99.2 3.7E-10 8.1E-15 116.2 16.6 124 364-505 2-134 (195)
254 TIGR00484 EF-G translation elo 99.2 9.9E-11 2.2E-15 142.9 14.4 165 362-541 8-172 (689)
255 PF03308 ArgK: ArgK protein; 99.2 1.4E-10 3.1E-15 120.0 13.3 200 334-582 1-230 (266)
256 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 4.3E-10 9.3E-15 109.8 15.7 143 364-540 22-170 (221)
257 PRK12739 elongation factor G; 99.2 1.2E-10 2.5E-15 142.2 14.8 166 362-542 6-171 (691)
258 KOG0092 GTPase Rab5/YPT51 and 99.2 1.6E-10 3.5E-15 112.9 11.8 144 363-540 4-152 (200)
259 cd00958 DhnA Class I fructose- 99.2 8.8E-11 1.9E-15 124.7 10.7 134 100-271 77-222 (235)
260 cd00331 IGPS Indole-3-glycerol 99.2 1.4E-10 3E-15 121.6 11.6 161 100-270 32-208 (217)
261 TIGR01949 AroFGH_arch predicte 99.2 5.2E-11 1.1E-15 128.0 8.4 131 100-269 91-233 (258)
262 cd04105 SR_beta Signal recogni 99.2 4.6E-10 1E-14 116.3 14.8 129 365-521 1-138 (203)
263 PF00071 Ras: Ras family; Int 99.2 4.2E-10 9.2E-15 112.0 13.7 140 366-540 1-146 (162)
264 COG5019 CDC3 Septin family pro 99.1 1.8E-08 4E-13 108.6 26.2 148 362-533 21-199 (373)
265 cd04102 RabL3 RabL3 (Rab-like3 99.1 1.9E-09 4.1E-14 111.3 18.2 117 365-505 1-143 (202)
266 cd01899 Ygr210 Ygr210 subfamil 99.1 8.4E-10 1.8E-14 121.2 16.3 103 367-473 1-110 (318)
267 COG2229 Predicted GTPase [Gene 99.1 9.1E-10 2E-14 107.2 14.3 144 363-540 9-163 (187)
268 KOG0084 GTPase Rab1/YPT1, smal 99.1 3.6E-10 7.7E-15 110.9 11.5 145 362-540 7-157 (205)
269 PF00735 Septin: Septin; Inte 99.1 5.9E-10 1.3E-14 120.5 14.1 138 364-523 4-173 (281)
270 PTZ00258 GTP-binding protein; 99.1 1.6E-09 3.4E-14 121.3 16.6 106 360-473 17-126 (390)
271 PF08477 Miro: Miro-like prote 99.1 1.7E-10 3.7E-15 108.6 7.6 109 366-502 1-119 (119)
272 KOG0075 GTP-binding ADP-ribosy 99.1 4.3E-10 9.4E-15 104.2 9.9 143 364-540 20-167 (186)
273 PRK09602 translation-associate 99.1 1.5E-09 3.2E-14 122.9 16.2 102 364-473 1-113 (396)
274 KOG0078 GTP-binding protein SE 99.1 1.8E-09 3.9E-14 107.7 14.5 147 361-540 9-159 (207)
275 PLN00043 elongation factor 1-a 99.1 9.8E-10 2.1E-14 126.8 14.2 172 363-541 6-199 (447)
276 TIGR00078 nadC nicotinate-nucl 99.1 1.8E-10 3.9E-15 123.0 7.4 102 143-267 150-253 (265)
277 TIGR00993 3a0901s04IAP86 chlor 99.1 1.5E-09 3.3E-14 125.1 15.3 122 361-506 115-251 (763)
278 TIGR00750 lao LAO/AO transport 99.1 1.7E-08 3.8E-13 111.0 23.0 207 330-582 2-238 (300)
279 PTZ00132 GTP-binding nuclear p 99.1 3.1E-09 6.8E-14 111.3 16.3 143 363-540 8-153 (215)
280 TIGR00503 prfC peptide chain r 99.1 9.4E-10 2E-14 129.0 13.5 161 362-537 9-173 (527)
281 COG5256 TEF1 Translation elong 99.1 1.1E-09 2.4E-14 119.3 12.8 170 363-542 6-198 (428)
282 KOG0394 Ras-related GTPase [Ge 99.1 6.9E-10 1.5E-14 107.2 9.9 145 362-541 7-164 (210)
283 PLN00116 translation elongatio 99.0 2.5E-09 5.4E-14 132.9 16.9 151 359-518 14-186 (843)
284 PRK00741 prfC peptide chain re 99.0 1.6E-09 3.5E-14 127.1 14.4 146 363-520 9-158 (526)
285 PTZ00416 elongation factor 2; 99.0 2.7E-09 5.9E-14 132.3 16.9 155 359-522 14-184 (836)
286 cd01572 QPRTase Quinolinate ph 99.0 3.3E-10 7.2E-15 121.3 7.6 101 143-266 154-257 (268)
287 KOG0462 Elongation factor-type 99.0 2.1E-09 4.5E-14 119.7 13.3 163 363-541 59-221 (650)
288 PRK13768 GTPase; Provisional 99.0 1.8E-09 3.8E-14 115.7 11.6 120 436-583 98-248 (253)
289 KOG0098 GTPase Rab2, small G p 99.0 5.7E-09 1.2E-13 101.2 13.6 144 363-540 5-153 (216)
290 COG4917 EutP Ethanolamine util 99.0 2.2E-09 4.8E-14 97.2 9.9 141 366-579 3-143 (148)
291 PRK13351 elongation factor G; 99.0 3.2E-09 6.9E-14 130.1 14.4 147 363-521 7-153 (687)
292 KOG0080 GTPase Rab18, small G 99.0 3.7E-09 8E-14 99.5 11.3 142 363-540 10-159 (209)
293 COG1217 TypA Predicted membran 99.0 5E-09 1.1E-13 114.5 14.0 192 363-585 4-198 (603)
294 COG5257 GCD11 Translation init 99.0 4.1E-09 8.9E-14 110.3 12.7 186 363-584 9-204 (415)
295 PRK09601 GTP-binding protein Y 99.0 7.7E-09 1.7E-13 114.4 15.4 101 365-473 3-107 (364)
296 PLN00023 GTP-binding protein; 99.0 7.1E-09 1.5E-13 112.3 14.7 125 364-505 21-165 (334)
297 PRK07560 elongation factor EF- 99.0 6.1E-09 1.3E-13 127.9 16.0 137 360-505 16-153 (731)
298 cd04730 NPD_like 2-Nitropropan 99.0 8.2E-09 1.8E-13 109.8 14.9 156 103-269 17-191 (236)
299 KOG0461 Selenocysteine-specifi 99.0 1.6E-08 3.6E-13 106.3 16.1 184 363-585 6-196 (522)
300 COG1100 GTPase SAR1 and relate 98.9 2.3E-08 5.1E-13 104.8 17.4 117 365-509 6-129 (219)
301 KOG0093 GTPase Rab3, small G p 98.9 6.3E-09 1.4E-13 96.5 10.6 144 362-542 19-170 (193)
302 KOG1532 GTPase XAB1, interacts 98.9 1.9E-08 4.1E-13 103.2 14.7 194 361-583 16-265 (366)
303 TIGR00490 aEF-2 translation el 98.9 6.6E-09 1.4E-13 127.3 13.5 138 360-506 15-153 (720)
304 KOG1547 Septin CDC10 and relat 98.9 2E-08 4.4E-13 100.9 14.4 149 363-537 45-225 (336)
305 PRK12740 elongation factor G; 98.9 1.5E-08 3.3E-13 123.9 16.7 139 370-520 1-139 (668)
306 TIGR01163 rpe ribulose-phospha 98.9 5.7E-09 1.2E-13 108.9 10.4 160 100-269 12-199 (210)
307 KOG0095 GTPase Rab30, small G 98.9 2.3E-08 5.1E-13 92.7 13.0 142 363-540 6-154 (213)
308 KOG0087 GTPase Rab11/YPT3, sma 98.9 6.5E-09 1.4E-13 103.2 9.4 147 361-540 11-161 (222)
309 PRK06801 hypothetical protein; 98.9 6.2E-09 1.3E-13 111.9 10.2 151 100-278 85-248 (286)
310 COG3276 SelB Selenocysteine-sp 98.9 3.5E-08 7.5E-13 108.6 15.0 157 366-582 2-162 (447)
311 PF09439 SRPRB: Signal recogni 98.8 1E-08 2.3E-13 102.4 9.6 132 364-524 3-144 (181)
312 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 3.1E-08 6.7E-13 103.5 13.3 150 366-539 1-161 (232)
313 COG0050 TufB GTPases - transla 98.8 4.2E-08 9.1E-13 101.6 13.7 187 360-583 8-202 (394)
314 KOG1144 Translation initiation 98.8 1.9E-08 4.2E-13 114.9 12.3 134 363-506 474-607 (1064)
315 KOG0447 Dynamin-like GTP bindi 98.8 1.9E-06 4.2E-11 95.6 27.1 144 362-505 306-493 (980)
316 PRK08072 nicotinate-nucleotide 98.8 5.6E-09 1.2E-13 111.8 7.3 82 170-264 177-261 (277)
317 PRK00278 trpC indole-3-glycero 98.8 1.1E-08 2.4E-13 109.6 9.6 160 100-270 71-247 (260)
318 PRK07226 fructose-bisphosphate 98.8 2E-08 4.3E-13 108.5 11.1 133 100-269 94-237 (267)
319 KOG0079 GTP-binding protein H- 98.8 1.8E-08 3.9E-13 93.6 9.1 144 363-540 7-154 (198)
320 KOG2655 Septin family protein 98.8 6.8E-08 1.5E-12 105.3 14.6 149 363-537 20-199 (366)
321 PRK14845 translation initiatio 98.8 8.1E-08 1.7E-12 119.1 16.9 119 376-505 473-592 (1049)
322 COG0012 Predicted GTPase, prob 98.8 7.1E-08 1.5E-12 104.9 14.2 104 364-473 2-108 (372)
323 COG2895 CysN GTPases - Sulfate 98.8 6.4E-08 1.4E-12 102.9 13.3 167 362-541 4-189 (431)
324 cd01568 QPRTase_NadC Quinolina 98.8 9.2E-09 2E-13 110.6 7.0 85 166-262 166-254 (269)
325 KOG0076 GTP-binding ADP-ribosy 98.8 2.7E-08 5.9E-13 95.5 8.8 146 363-540 16-172 (197)
326 KOG0395 Ras-related GTPase [Ge 98.7 8.9E-08 1.9E-12 98.2 12.2 142 364-540 3-150 (196)
327 COG0480 FusA Translation elong 98.7 4E-08 8.6E-13 117.5 11.0 152 361-523 7-158 (697)
328 cd01900 YchF YchF subfamily. 98.7 3E-08 6.5E-13 106.4 8.4 100 367-473 1-103 (274)
329 KOG0090 Signal recognition par 98.7 2.8E-07 6.1E-12 91.8 13.9 130 362-523 36-176 (238)
330 KOG0070 GTP-binding ADP-ribosy 98.7 1.2E-07 2.7E-12 92.7 10.8 142 363-540 16-163 (181)
331 KOG0458 Elongation factor 1 al 98.7 2.9E-07 6.2E-12 104.3 14.6 170 363-541 176-368 (603)
332 COG5192 BMS1 GTP-binding prote 98.6 3.9E-07 8.4E-12 101.2 14.0 145 360-539 65-210 (1077)
333 KOG0086 GTPase Rab4, small G p 98.6 2.6E-07 5.6E-12 86.3 10.6 144 363-540 8-156 (214)
334 COG0481 LepA Membrane GTPase L 98.6 1.3E-07 2.8E-12 104.1 9.7 96 436-541 77-172 (603)
335 PRK05742 nicotinate-nucleotide 98.6 4.7E-08 1E-12 104.6 6.1 86 160-264 174-262 (277)
336 PF03029 ATP_bind_1: Conserved 98.6 4.8E-08 1E-12 103.3 5.7 119 436-581 92-236 (238)
337 KOG2486 Predicted GTPase [Gene 98.6 1.4E-07 3E-12 97.6 8.6 120 363-506 135-263 (320)
338 cd01573 modD_like ModD; Quinol 98.6 8.8E-08 1.9E-12 102.9 6.9 86 170-267 173-261 (272)
339 KOG0091 GTPase Rab39, small G 98.6 2E-06 4.3E-11 81.7 14.9 146 364-541 8-159 (213)
340 PRK08185 hypothetical protein; 98.6 4.2E-07 9.1E-12 97.5 11.8 144 102-276 81-241 (283)
341 KOG0446 Vacuolar sorting prote 98.5 2.8E-07 6E-12 110.0 11.2 145 363-507 28-215 (657)
342 KOG0468 U5 snRNP-specific prot 98.5 3.9E-07 8.4E-12 103.4 11.3 137 360-504 124-262 (971)
343 KOG3883 Ras family small GTPas 98.5 1.2E-06 2.5E-11 82.3 12.3 149 360-539 5-159 (198)
344 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.4E-07 5.2E-12 92.0 8.0 34 363-396 101-134 (157)
345 cd04178 Nucleostemin_like Nucl 98.5 1.7E-07 3.7E-12 94.1 6.9 57 362-445 115-172 (172)
346 KOG0460 Mitochondrial translat 98.5 1.3E-06 2.7E-11 92.6 13.4 165 362-544 52-224 (449)
347 TIGR00073 hypB hydrogenase acc 98.5 6E-07 1.3E-11 93.4 10.3 167 362-580 20-205 (207)
348 KOG0097 GTPase Rab14, small G 98.5 1.3E-06 2.9E-11 80.4 11.1 144 363-540 10-158 (215)
349 KOG0088 GTPase Rab21, small G 98.5 3.4E-07 7.4E-12 86.1 7.0 161 363-583 12-176 (218)
350 COG4108 PrfC Peptide chain rel 98.4 8.7E-07 1.9E-11 96.9 10.3 133 364-506 12-148 (528)
351 PTZ00099 rab6; Provisional 98.4 1.3E-06 2.7E-11 88.5 10.4 108 436-582 30-142 (176)
352 cd01851 GBP Guanylate-binding 98.4 3.5E-06 7.7E-11 88.6 13.9 119 363-504 6-147 (224)
353 KOG1707 Predicted Ras related/ 98.4 1.1E-06 2.4E-11 99.5 9.9 145 363-540 8-160 (625)
354 KOG0083 GTPase Rab26/Rab37, sm 98.4 1.1E-07 2.4E-12 86.7 1.6 98 436-544 48-149 (192)
355 KOG4252 GTP-binding protein [S 98.4 6.8E-07 1.5E-11 85.9 6.6 118 363-506 19-139 (246)
356 KOG0081 GTPase Rab27, small G 98.4 9.5E-07 2.1E-11 83.2 7.2 146 366-540 11-166 (219)
357 PRK06552 keto-hydroxyglutarate 98.4 3.1E-06 6.8E-11 87.6 11.7 156 99-269 25-189 (213)
358 cd04722 TIM_phosphate_binding 98.3 1.9E-06 4.1E-11 88.3 10.1 155 100-263 13-199 (200)
359 TIGR03597 GTPase_YqeH ribosome 98.3 4.8E-07 1E-11 101.9 5.9 129 364-520 154-294 (360)
360 KOG0074 GTP-binding ADP-ribosy 98.3 2.2E-06 4.8E-11 79.4 9.0 116 361-506 14-134 (185)
361 KOG0077 Vesicle coat complex C 98.3 3E-06 6.5E-11 81.0 10.0 112 362-506 18-136 (193)
362 PRK07428 nicotinate-nucleotide 98.3 1E-06 2.2E-11 94.9 7.2 86 171-269 186-277 (288)
363 COG5258 GTPBP1 GTPase [General 98.3 3.5E-06 7.5E-11 90.6 11.0 144 360-522 113-285 (527)
364 TIGR00101 ureG urease accessor 98.3 2.4E-06 5.1E-11 88.1 9.6 103 436-582 93-196 (199)
365 KOG0072 GTP-binding ADP-ribosy 98.3 7.9E-06 1.7E-10 76.1 11.6 112 436-582 63-179 (182)
366 cd01855 YqeH YqeH. YqeH is an 98.3 1.8E-06 3.9E-11 88.6 8.0 26 364-389 127-152 (190)
367 cd04726 KGPDC_HPS 3-Keto-L-gul 98.3 2E-05 4.3E-10 81.7 15.5 160 99-269 13-192 (202)
368 PF03193 DUF258: Protein of un 98.3 7.8E-07 1.7E-11 87.3 4.6 27 365-391 36-62 (161)
369 PRK10463 hydrogenase nickel in 98.2 5.6E-06 1.2E-10 89.0 11.0 56 491-579 230-286 (290)
370 cd01849 YlqF_related_GTPase Yl 98.2 2.7E-06 5.9E-11 84.2 8.1 57 362-445 98-155 (155)
371 PRK01130 N-acetylmannosamine-6 98.2 2E-05 4.3E-10 82.9 14.9 153 100-269 24-208 (221)
372 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.3E-06 9.4E-11 91.4 10.1 58 362-446 119-177 (287)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.2E-06 4.7E-11 83.5 6.7 29 366-394 85-113 (141)
374 TIGR03596 GTPase_YlqF ribosome 98.2 5.5E-06 1.2E-10 90.2 10.0 58 362-446 116-174 (276)
375 COG1161 Predicted GTPases [Gen 98.2 2.5E-06 5.5E-11 94.4 6.7 57 363-446 131-188 (322)
376 KOG0467 Translation elongation 98.1 1.5E-05 3.2E-10 92.6 12.3 129 363-503 8-136 (887)
377 cd04729 NanE N-acetylmannosami 98.1 2.3E-05 5E-10 82.3 12.8 150 100-269 28-212 (219)
378 cd01859 MJ1464 MJ1464. This f 98.1 9.8E-06 2.1E-10 80.2 9.1 94 453-582 3-96 (156)
379 KOG0393 Ras-related small GTPa 98.1 5.2E-06 1.1E-10 83.6 7.0 149 364-540 4-164 (198)
380 KOG1491 Predicted GTP-binding 98.1 6.2E-06 1.4E-10 87.8 7.7 108 359-474 15-126 (391)
381 COG1162 Predicted GTPases [Gen 98.1 5.9E-06 1.3E-10 88.3 7.6 26 365-390 165-190 (301)
382 TIGR00092 GTP-binding protein 98.1 5.5E-06 1.2E-10 92.0 7.0 102 365-473 3-108 (368)
383 KOG0071 GTP-binding ADP-ribosy 98.1 7.5E-05 1.6E-09 69.4 13.0 142 363-540 16-163 (180)
384 PRK12288 GTPase RsgA; Reviewed 98.1 4.2E-06 9.1E-11 93.3 5.9 30 366-395 207-236 (347)
385 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.3E-05 5.1E-10 77.7 9.2 76 457-540 3-80 (157)
386 PRK13796 GTPase YqeH; Provisio 98.0 1.1E-05 2.4E-10 91.1 7.5 23 365-387 161-183 (365)
387 KOG1486 GTP-binding protein DR 98.0 1.1E-05 2.4E-10 82.1 6.6 87 364-476 62-153 (364)
388 PRK12289 GTPase RsgA; Reviewed 98.0 1.3E-05 2.9E-10 89.4 7.6 29 366-394 174-202 (352)
389 cd01856 YlqF YlqF. Proteins o 98.0 1.5E-05 3.3E-10 80.2 6.9 56 363-445 114-170 (171)
390 cd01855 YqeH YqeH. YqeH is an 98.0 4.3E-05 9.4E-10 78.3 10.4 101 452-581 24-124 (190)
391 TIGR00157 ribosome small subun 97.9 1.1E-05 2.3E-10 86.1 5.9 29 365-393 121-149 (245)
392 KOG1143 Predicted translation 97.9 2.8E-05 6E-10 83.2 8.8 135 365-506 168-318 (591)
393 KOG3886 GTP-binding protein [S 97.9 2.7E-05 5.8E-10 78.6 8.0 150 364-537 4-161 (295)
394 cd03112 CobW_like The function 97.9 2.7E-05 5.8E-10 77.3 8.1 65 436-503 88-158 (158)
395 KOG3859 Septins (P-loop GTPase 97.9 0.007 1.5E-07 63.0 25.4 139 364-522 42-206 (406)
396 cd01859 MJ1464 MJ1464. This f 97.9 5.1E-05 1.1E-09 75.1 8.7 31 363-393 100-130 (156)
397 PF09547 Spore_IV_A: Stage IV 97.9 0.00026 5.6E-09 78.3 14.6 159 356-539 9-219 (492)
398 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.8E-05 1E-09 74.0 8.2 77 455-540 4-82 (141)
399 KOG0466 Translation initiation 97.8 4.8E-05 1E-09 79.5 8.4 170 363-540 37-226 (466)
400 cd03114 ArgK-like The function 97.8 6.6E-05 1.4E-09 73.6 9.0 57 435-502 92-148 (148)
401 KOG1424 Predicted GTP-binding 97.8 1.9E-05 4.1E-10 88.5 5.5 56 363-445 313-369 (562)
402 PRK02083 imidazole glycerol ph 97.8 0.00027 5.9E-09 75.9 14.0 161 100-267 31-231 (253)
403 TIGR01425 SRP54_euk signal rec 97.8 0.00015 3.2E-09 82.5 12.4 70 435-506 183-254 (429)
404 TIGR00343 pyridoxal 5'-phospha 97.8 8E-05 1.7E-09 78.4 8.9 78 191-269 117-234 (287)
405 KOG0465 Mitochondrial elongati 97.8 6.3E-05 1.4E-09 85.7 8.1 146 363-522 38-185 (721)
406 cd04727 pdxS PdxS is a subunit 97.7 0.00012 2.7E-09 77.1 9.7 79 190-269 114-231 (283)
407 PRK00098 GTPase RsgA; Reviewed 97.7 4.5E-05 9.7E-10 83.9 6.6 28 365-392 165-192 (298)
408 PRK12727 flagellar biosynthesi 97.7 0.00075 1.6E-08 78.0 16.4 87 435-537 429-519 (559)
409 TIGR03572 WbuZ glycosyl amidat 97.7 0.00038 8.3E-09 73.8 13.3 159 100-265 31-229 (232)
410 cd04732 HisA HisA. Phosphorib 97.7 0.00031 6.8E-09 74.5 12.6 162 100-269 30-225 (234)
411 TIGR03596 GTPase_YlqF ribosome 97.7 0.00014 3E-09 79.2 10.1 93 452-582 11-103 (276)
412 cd01856 YlqF YlqF. Proteins o 97.7 0.00014 3E-09 73.2 9.3 93 451-581 8-100 (171)
413 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.00046 9.9E-09 71.7 13.0 158 100-269 13-192 (206)
414 cd01854 YjeQ_engC YjeQ/EngC. 97.7 7.9E-05 1.7E-09 81.5 7.4 29 365-393 162-190 (287)
415 cd01849 YlqF_related_GTPase Yl 97.7 0.00013 2.9E-09 72.1 8.3 69 464-540 1-70 (155)
416 PRK04180 pyridoxal biosynthesi 97.7 0.00015 3.4E-09 76.6 8.8 81 191-272 124-243 (293)
417 cd04731 HisF The cyclase subun 97.7 0.00056 1.2E-08 73.1 13.3 160 100-268 28-228 (243)
418 TIGR00064 ftsY signal recognit 97.7 0.00057 1.2E-08 74.0 13.4 69 436-506 156-232 (272)
419 PF00448 SRP54: SRP54-type pro 97.6 0.00011 2.4E-09 75.5 7.1 90 436-538 85-176 (196)
420 PRK12289 GTPase RsgA; Reviewed 97.6 0.00021 4.6E-09 79.9 9.4 83 449-540 76-160 (352)
421 PRK10416 signal recognition pa 97.6 0.00067 1.4E-08 75.0 13.2 89 436-537 198-294 (318)
422 PRK14974 cell division protein 97.6 0.00055 1.2E-08 75.9 12.3 89 436-537 224-314 (336)
423 TIGR00157 ribosome small subun 97.6 0.00022 4.7E-09 76.2 8.6 84 449-540 23-108 (245)
424 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.0003 6.5E-09 77.0 9.5 100 442-582 7-106 (287)
425 smart00275 G_alpha G protein a 97.5 0.00076 1.6E-08 75.5 12.7 99 437-539 186-318 (342)
426 PRK00748 1-(5-phosphoribosyl)- 97.5 0.0009 1.9E-08 71.0 12.5 163 100-268 31-225 (233)
427 COG0378 HypB Ni2+-binding GTPa 97.5 0.0001 2.3E-09 73.4 4.9 100 436-580 98-199 (202)
428 TIGR03151 enACPred_II putative 97.5 0.0017 3.8E-08 71.5 14.6 143 110-263 34-190 (307)
429 KOG0448 Mitofusin 1 GTPase, in 97.5 0.13 2.7E-06 60.6 29.7 110 807-916 615-739 (749)
430 PRK00098 GTPase RsgA; Reviewed 97.5 0.00023 5E-09 78.3 7.6 73 460-540 78-152 (298)
431 cd04724 Tryptophan_synthase_al 97.5 0.0014 3.1E-08 69.7 13.4 172 88-270 4-222 (242)
432 PF05879 RHD3: Root hair defec 97.4 0.29 6.2E-06 60.6 34.4 80 370-470 1-88 (742)
433 cd03115 SRP The signal recogni 97.4 0.0014 3.1E-08 66.0 12.2 69 436-506 84-154 (173)
434 KOG2484 GTPase [General functi 97.4 0.00011 2.4E-09 80.2 4.2 38 361-398 249-286 (435)
435 TIGR03597 GTPase_YqeH ribosome 97.4 0.001 2.3E-08 75.1 12.1 88 450-540 51-138 (360)
436 KOG2423 Nucleolar GTPase [Gene 97.4 7.3E-05 1.6E-09 80.8 2.4 34 363-396 306-339 (572)
437 PRK13111 trpA tryptophan synth 97.4 0.0037 7.9E-08 66.9 15.2 175 87-272 15-237 (258)
438 KOG1673 Ras GTPases [General f 97.4 0.0007 1.5E-08 64.2 8.2 143 364-541 20-172 (205)
439 PRK14722 flhF flagellar biosyn 97.4 0.0016 3.5E-08 73.0 12.7 25 363-387 136-160 (374)
440 KOG0464 Elongation factor G [T 97.4 5.9E-05 1.3E-09 81.5 1.1 139 365-520 38-181 (753)
441 PRK11889 flhF flagellar biosyn 97.4 0.0012 2.6E-08 73.6 11.2 69 436-506 322-392 (436)
442 KOG0469 Elongation factor 2 [T 97.4 0.00035 7.6E-09 77.6 6.9 135 360-503 15-162 (842)
443 PRK00771 signal recognition pa 97.3 0.0011 2.3E-08 76.2 11.2 69 436-506 177-247 (437)
444 KOG0463 GTP-binding protein GP 97.3 0.0012 2.7E-08 70.9 10.6 82 435-521 219-302 (641)
445 COG3640 CooC CO dehydrogenase 97.3 0.00064 1.4E-08 69.7 7.9 62 436-504 135-198 (255)
446 TIGR02475 CobW cobalamin biosy 97.3 0.0019 4E-08 72.3 12.2 147 363-519 3-200 (341)
447 PRK14723 flhF flagellar biosyn 97.3 0.0032 6.9E-08 76.3 14.6 70 435-506 264-338 (767)
448 PRK05703 flhF flagellar biosyn 97.3 0.0044 9.5E-08 71.4 15.2 70 435-506 300-372 (424)
449 TIGR00735 hisF imidazoleglycer 97.3 0.0032 6.9E-08 67.7 13.3 160 100-266 31-232 (254)
450 COG0523 Putative GTPases (G3E 97.3 0.0024 5.1E-08 70.5 12.3 159 365-539 2-186 (323)
451 KOG2485 Conserved ATP/GTP bind 97.3 0.00057 1.2E-08 72.7 7.0 27 361-387 140-166 (335)
452 PRK01033 imidazole glycerol ph 97.2 0.0038 8.1E-08 67.2 12.7 160 100-266 31-229 (258)
453 TIGR00007 phosphoribosylformim 97.2 0.0035 7.6E-08 66.3 12.1 161 100-269 29-224 (230)
454 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00043 9.3E-09 70.2 4.8 79 436-518 86-168 (178)
455 PRK14721 flhF flagellar biosyn 97.1 0.0085 1.8E-07 68.4 15.1 69 435-506 270-341 (420)
456 PRK12726 flagellar biosynthesi 97.1 0.0032 7E-08 70.0 11.1 69 435-506 286-357 (407)
457 cd02038 FleN-like FleN is a me 97.1 0.0044 9.5E-08 60.1 10.7 80 436-524 46-127 (139)
458 PRK04302 triosephosphate isome 97.1 0.00085 1.8E-08 70.6 6.2 115 151-269 78-208 (223)
459 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0013 2.8E-08 72.0 7.8 73 459-540 75-149 (287)
460 TIGR03348 VI_IcmF type VI secr 97.1 0.0035 7.7E-08 81.4 13.0 149 327-505 83-257 (1169)
461 TIGR00259 thylakoid_BtpA membr 97.1 0.023 5E-07 60.3 16.7 152 110-265 39-229 (257)
462 PRK10867 signal recognition pa 97.1 0.0071 1.5E-07 69.4 13.7 69 436-506 185-255 (433)
463 PRK01889 GTPase RsgA; Reviewed 97.0 0.0021 4.6E-08 72.4 9.4 72 460-540 110-182 (356)
464 PRK11537 putative GTP-binding 97.0 0.0032 6.9E-08 69.7 10.4 135 363-506 3-165 (318)
465 PRK08883 ribulose-phosphate 3- 97.0 0.0027 5.9E-08 66.3 8.9 158 100-268 13-200 (220)
466 KOG3905 Dynein light intermedi 97.0 0.04 8.6E-07 58.8 17.0 65 492-583 223-291 (473)
467 KOG2203 GTP-binding protein [G 96.9 0.88 1.9E-05 52.2 27.8 28 364-391 37-64 (772)
468 PRK13796 GTPase YqeH; Provisio 96.8 0.01 2.2E-07 67.2 12.6 82 456-540 62-144 (365)
469 KOG0459 Polypeptide release fa 96.8 0.0024 5.1E-08 69.9 6.7 173 363-546 78-277 (501)
470 CHL00200 trpA tryptophan synth 96.8 0.0079 1.7E-07 64.5 10.8 172 87-270 18-238 (263)
471 TIGR01182 eda Entner-Doudoroff 96.8 0.01 2.2E-07 60.9 11.0 154 99-268 20-181 (204)
472 TIGR00959 ffh signal recogniti 96.8 0.0071 1.5E-07 69.4 10.9 69 436-506 184-254 (428)
473 TIGR00262 trpA tryptophan synt 96.8 0.012 2.6E-07 63.0 11.9 176 87-270 13-234 (256)
474 KOG0082 G-protein alpha subuni 96.8 0.016 3.6E-07 63.9 12.9 89 436-528 196-315 (354)
475 KOG1487 GTP-binding protein DR 96.7 0.0012 2.7E-08 67.9 3.8 90 365-478 60-152 (358)
476 PF01081 Aldolase: KDPG and KH 96.7 0.0078 1.7E-07 61.4 9.6 157 98-269 19-182 (196)
477 PRK06995 flhF flagellar biosyn 96.7 0.026 5.6E-07 65.6 14.9 25 363-387 255-279 (484)
478 PRK12288 GTPase RsgA; Reviewed 96.7 0.014 3.1E-07 65.3 12.4 105 460-597 118-226 (347)
479 PRK12724 flagellar biosynthesi 96.7 0.0028 6E-08 71.7 6.7 69 436-506 301-374 (432)
480 PF03437 BtpA: BtpA family; I 96.6 0.047 1E-06 57.9 14.9 154 107-266 37-230 (254)
481 cd00381 IMPDH IMPDH: The catal 96.6 0.02 4.2E-07 63.8 12.0 142 108-262 55-225 (325)
482 PRK05458 guanosine 5'-monophos 96.5 0.024 5.2E-07 62.5 12.1 77 190-267 143-234 (326)
483 PRK01889 GTPase RsgA; Reviewed 96.5 0.0028 6.1E-08 71.4 4.9 26 364-389 195-220 (356)
484 PLN02591 tryptophan synthase 96.5 0.029 6.3E-07 59.7 12.2 174 87-269 5-224 (250)
485 cd04178 Nucleostemin_like Nucl 96.5 0.0045 9.8E-08 62.2 5.8 43 464-506 1-45 (172)
486 cd02036 MinD Bacterial cell di 96.4 0.013 2.7E-07 59.1 8.9 64 436-505 64-128 (179)
487 KOG1707 Predicted Ras related/ 96.4 0.011 2.4E-07 67.9 9.0 115 363-506 424-541 (625)
488 PRK12723 flagellar biosynthesi 96.4 0.018 3.8E-07 65.4 10.6 69 435-506 255-327 (388)
489 PRK06731 flhF flagellar biosyn 96.4 0.024 5.2E-07 61.1 11.1 69 436-506 156-226 (270)
490 COG1419 FlhF Flagellar GTP-bin 96.4 0.027 5.9E-07 63.0 11.7 141 364-507 203-354 (407)
491 PF05783 DLIC: Dynein light in 96.4 0.052 1.1E-06 63.0 14.4 50 491-540 196-249 (472)
492 KOG0096 GTPase Ran/TC4/GSP1 (n 96.3 0.0063 1.4E-07 60.1 5.5 142 363-540 9-154 (216)
493 PRK13587 1-(5-phosphoribosyl)- 96.2 0.062 1.3E-06 56.9 13.0 159 102-268 34-226 (234)
494 PRK01222 N-(5'-phosphoribosyl) 96.2 0.099 2.1E-06 54.4 14.2 166 87-266 6-186 (210)
495 PRK05718 keto-hydroxyglutarate 96.2 0.041 8.8E-07 57.1 11.2 148 99-260 27-180 (212)
496 KOG2484 GTPase [General functi 96.2 0.012 2.5E-07 64.8 7.4 83 450-541 134-218 (435)
497 PF03060 NMO: Nitronate monoox 96.2 0.04 8.6E-07 61.6 12.0 143 110-262 34-218 (330)
498 PF06858 NOG1: Nucleolar GTP-b 96.2 0.0087 1.9E-07 47.6 4.6 42 461-502 12-58 (58)
499 PRK06015 keto-hydroxyglutarate 96.2 0.046 1E-06 56.0 11.1 148 99-261 16-170 (201)
500 PRK14024 phosphoribosyl isomer 96.1 0.038 8.3E-07 58.8 10.9 164 100-269 33-228 (241)
No 1
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-43 Score=392.23 Aligned_cols=533 Identities=15% Similarity=0.174 Sum_probs=405.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh------hc----------cc------cc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ------QR----------CE------RH 420 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~------~~----------~~------~~ 420 (921)
..++|+|+|.+++||||+||||+.++++|.+..|||.++..+...+...... +. .. ..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 5789999999999999999999999999999999999999987764332110 00 00 11
Q ss_pred CCCeEEeecC---CCccc-ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEE
Q 002437 421 PDGQYICYLP---SPILK-EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVF 496 (921)
Q Consensus 421 ~~g~~~~~~p---~~~l~-~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~viv 496 (921)
..-.+.++|| +++|+ +++++|.||++ ..++...++..++.++|++|||+++.+.++.++++|++...+.+++|||
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld-~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLD-VDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCC-CchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 1112556788 55775 69999999997 5577889999999999999999999999999999999999988899999
Q ss_pred EEeCCCCCCChHH-HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccc-ccchHHHH
Q 002437 497 VLNKSDLYQNAFE-LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWR-INTFDKLE 574 (921)
Q Consensus 497 VlNK~D~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~-~sg~~~L~ 574 (921)
+.||||...++.+ .+.+++++.+.-..........||+||++..++++.....+.... ..+ ++..+. ---|++|+
T Consensus 267 lnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~l~~r~q~a~g~pe~--~~~-aeg~~~r~~efqdFe 343 (749)
T KOG0448|consen 267 LNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEVLNARTQNANGNPEH--GAL-AEGFYARFIEFQDFE 343 (749)
T ss_pred EechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccchhhhhhhhcCCCccc--ccc-cccccccccccccHH
Confidence 9999999887544 666777754211111112357899999999999888655432221 111 111111 11245566
Q ss_pred HHHHHhhccCCccchHHHHHhhcCHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 575 KLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAK----QDLTLANEMIDSLKEYVMKMESESISWR 650 (921)
Q Consensus 575 ~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~~il~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 650 (921)
.+++++. ...++.|+++++..+..+++.+...+........ .....+++..+.++....++....+...
T Consensus 344 -~fE~cis------~salktkf~~h~~rak~~l~~v~~~idsv~~~~~~~~~~~~~~~ne~~~~l~~~~~~~~~~~~~~k 416 (749)
T KOG0448|consen 344 -KFEECIS------QSALKTKFEQHLHRAKQYLSKVKLDIDSVSESAEKFRSVIQNELNERLETLKPTVINALLGKRDLK 416 (749)
T ss_pred -HHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 6677776 6788889999999999999888887776644433 3344455566677777788887778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCcccCCCcchhHHHhhhcchHHHHHHHHHHHHHHHHHhhHHhH
Q 002437 651 RKTLSLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNAREG 730 (921)
Q Consensus 651 ~~l~~~i~~~~~~~~~~l~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 730 (921)
+.+.+..+++...+...+.++ .+|. ++-+++|++-..-.|+..+...+.++ +.+++.++|........
T Consensus 417 ~kv~q~~eev~~~vs~~~~eE----Lid~-----~~~~fhp~~~~~g~yk~yl~~~i~~~---l~~nl~dr~~~~~~~~i 484 (749)
T KOG0448|consen 417 EKVEQLTEEVTFKVSSDLEEE----LIDA-----FDCPFHPSPKYLGQYKCYLPAFIEKD---LGSNLVDRCSTESENVI 484 (749)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHH-----hcCCCCCCccccceeeehhhHHHHHH---HhHHHHHHhcchHHHHH
Confidence 888888888888888888887 2466 67788877666677777777777777 66678887777777666
Q ss_pred HHHHHHHHhcCCccc----------------------------------CCCCcCCcchHHHHHh--hhccHHHHhhccC
Q 002437 731 RRYKESFENRWPSLV----------------------------------YLQPQVYPDMYELVRK--VDGYSSRVIEDFS 774 (921)
Q Consensus 731 ~~~~~~~~~~~~~~~----------------------------------~~~~~f~~~~~~l~~~--~~~~~~~~l~~~~ 774 (921)
..-++.+.+.+..++ ...|+|+|+|..++.+ ++.+....+.+..
T Consensus 485 ~q~qqe~~~~i~~i~~~~~~~~l~~vv~~q~F~~~~~l~~~~L~~df~ed~~F~ft~g~~~~~~r~~~p~~~~p~l~~~~ 564 (749)
T KOG0448|consen 485 LQRQQELTEEIVPILKNEFDSDLLVVVRSQMFRLSYHLNCKKLKADFQEDLEFRFTWGWFALILRFLGPVNGRPLLEGQT 564 (749)
T ss_pred HHHHHHHHHHHhhhccchhhhhHHHHHHhhhhhhhhccchhhhhhhhhhhhhhhhccchHHHHHHhhcCCCCCchhhccc
Confidence 665555554433222 2228999999999988 3344555554443
Q ss_pred Cc--------------ccchhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH--HHHHHHHHHHHHhhchhh
Q 002437 775 AS--------------STSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLA--LGLCSAGGYIAVANFPAR 838 (921)
Q Consensus 775 ~~--------------~~~~~~~~~~~~~~~~t~~~~g~~g~~a~~~~~i~~~~~~~~~g--~~~~~~~~~~~l~~~~~~ 838 (921)
.. ......+ +....+..+..++...++++++++.++++++|+.+| ++.++.+.|+++|+|++.
T Consensus 565 ~~~~l~l~~~~~~~~v~~~~~~~-s~e~l~~t~v~t~as~~~~~t~gvlnvggvi~K~vgwr~l~~l~a~y~~ly~~erl 643 (749)
T KOG0448|consen 565 NQFQLGLTQQPKKKFVPILPKSS-SIEQLLLTMVTTLASFTLGGTRGVLNVGGVILKPVGWRSLSALLAPYGGLYLYERL 643 (749)
T ss_pred cccccchhccccCCCcccccccC-CHHHHHHHhhHHHHHHhcccceEEEEecceEEEeechHHHHHhhhHHHHHHhhhhc
Confidence 21 1111121 233444446778888889998888899999999999 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 839 RQRVIEKVNKIADGLAREIEEAMQ-----------KDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEK 907 (921)
Q Consensus 839 ~~~~~~k~r~~~~~~~~~~~~~l~-----------~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 907 (921)
+|++.++.|.++.||+++++++|+ +|+.+|+..+++.+|..++..++.++++++.+.+..+.++.+++.
T Consensus 644 ~w~i~dkeralk~q~~~~~~kkLq~~~~~h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~ 723 (749)
T KOG0448|consen 644 TWTIHDKERALKVQFVNHLKKKLQEFDDSHTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSR 723 (749)
T ss_pred eeeecCchhhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc
Q 002437 908 IQTLQVEIQNLH 919 (921)
Q Consensus 908 ~~~l~~~~~~l~ 919 (921)
+|.+|+++.++.
T Consensus 724 ~K~~~~ka~~l~ 735 (749)
T KOG0448|consen 724 LKFFRSKALKLE 735 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999999998664
No 2
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=5.9e-46 Score=404.71 Aligned_cols=250 Identities=24% Similarity=0.325 Sum_probs=220.9
Q ss_pred ccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcCCchhhhhhccccccccc---------cCCCcccccccccc----
Q 002437 4 LLSLHHAPTRVPAPRFLSDPYFPIPRFKPPPHRTHFPIKSISNDNSFRSEDSA---------AAPVISEKQQRPRT---- 70 (921)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---- 70 (921)
|+.||+++|+++|| |++|| |++|+||+|.+|.++.+|++||++|+||+. .+|++++.++.+|+
T Consensus 51 ~~~~~~~~~~~~r~-~~~d~---~~~l~~~~e~~r~~~~~~~~an~~r~qea~rvlee~~k~~~~~~~~~~~~~ry~~y~ 126 (347)
T PRK02615 51 LGRWHTEELRQARD-TPTDP---GTGLSHPQEEQRSTLEQVVSANAARVQEALRVLEEYGKLYDPELAAAAKQIRYELYT 126 (347)
T ss_pred HhhcChHHHHHhcC-CCCCc---CCCCCChhhhcccCHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 67999999999999 59999 999999999999999999999999999995 33666778888883
Q ss_pred ----cCCC--CCCCCccCCCCceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-Cc
Q 002437 71 ----LYPG--GYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RA 143 (921)
Q Consensus 71 ----~~~~--~~~~~~~~l~~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~ 143 (921)
++.. ++++ ..+|-.+++|+|||+. .++++.+++++++|+.+||||+|++++.++.+.|+.+..+|+. ++
T Consensus 127 le~~~~~~~~~~~~-~~~l~~~~LylIT~~~---~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~ 202 (347)
T PRK02615 127 LESELLNASLGKKR-RQRLKDARLYLITSPS---ENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGA 202 (347)
T ss_pred HHHHHHHhcccHHH-HHhhccCCEEEEECCc---hhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2311 2122 2245567899999982 3688999999999999999999999999999999999999999 99
Q ss_pred eEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--
Q 002437 144 LFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E-- 219 (921)
Q Consensus 144 ~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T-- 219 (921)
+|||||++|+|.++++||||||+.|+|...+|+++| |+ + +||+||||++++..| ...|||||++||+ |
T Consensus 203 ~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~llg---~~-~---iIG~S~Hs~~e~~~A-~~~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 203 LFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLLG---PE-K---IIGRSTTNPEEMAKA-IAEGADYIGVGPVFPTPT 274 (347)
T ss_pred eEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhcC---CC-C---EEEEecCCHHHHHHH-HHcCCCEEEECCCcCCCC
Confidence 999999999999999999999999999999999987 66 3 899999999999999 7999999999999 4
Q ss_pred CC---CCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 220 GQ---KADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 220 k~---~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+ +.|++ ..++++.+++||||||||+++|+.++.++|++|||++++.+..
T Consensus 275 Kp~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 275 KPGKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCC
Confidence 43 23454 5788888999999999999999999999999999999999864
No 3
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-38 Score=318.07 Aligned_cols=176 Identities=24% Similarity=0.305 Sum_probs=160.6
Q ss_pred ceEEEEcCCCCCCC-ch-HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 86 VVLQLEPHQVLAGG-DA-LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 86 ~~lylit~~~~~~~-~~-~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
+++|+||++..... .. +.++++++++|+++||||+|+.++.++++.|++++++|+. +++||||||+|+|.+++||||
T Consensus 6 ~~lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGV 85 (211)
T COG0352 6 LRLYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGV 85 (211)
T ss_pred cceEEEcCCccccccchhHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEE
Confidence 48999999876554 33 7999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-hhhhhhcC
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI-ENSLFTNV 234 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~-~~~~~~~~ 234 (921)
||||+|++...+|++++ +. + +||+||||.+|+.+| .+.|+||+++||| ||+. .|++ ..++.+..
T Consensus 86 HlGq~D~~~~~ar~~~~---~~-~---iIG~S~h~~eea~~A-~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~ 157 (211)
T COG0352 86 HLGQDDMPLAEARELLG---PG-L---IIGLSTHDLEEALEA-EELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV 157 (211)
T ss_pred EcCCcccchHHHHHhcC---CC-C---EEEeecCCHHHHHHH-HhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC
Confidence 99999999999999996 55 3 799999999999999 8999999999999 4542 2444 57888888
Q ss_pred CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||||||||+++|+.++.++|++||||++|.+..
T Consensus 158 ~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 158 NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcC
Confidence 89999999999999999999999999999999875
No 4
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-35 Score=305.53 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=159.7
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
.++||+||++......+++.+++++.+| +++||||+|+++..++++++++++++|+. |++|||||++|+|.++|||||
T Consensus 12 ~~~ly~It~~~~~~~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~~~adGV 91 (221)
T PRK06512 12 RCRIVLVAPPIADGAELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGDSRIAGRVKADGL 91 (221)
T ss_pred CCeEEEEeCCCcccccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHHhCCCEE
Confidence 4479999998654458999999999999 79999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEe-cCCHHHHHcccccCCCCEEEeCCC---CCC---CCCcc-hhhhhhcC
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRN-VQTLDAAFNASSSEGADFLVCCFG---EGQ---KADVI-ENSLFTNV 234 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S-~h~~~e~~~A~~~~gaDyv~~gpv---Tk~---~~g~~-~~~~~~~~ 234 (921)
|||++|++...+|+.+| ++ . +||+| ||+.+++.+| .+.||||++|||| ||+ +.|++ .+++++.+
T Consensus 92 HLg~~d~~~~~~r~~~~---~~-~---iiG~s~~~s~~~a~~A-~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~ 163 (221)
T PRK06512 92 HIEGNLAALAEAIEKHA---PK-M---IVGFGNLRDRHGAMEI-GELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI 163 (221)
T ss_pred EECccccCHHHHHHhcC---CC-C---EEEecCCCCHHHHHHh-hhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC
Confidence 99999999999999887 66 3 79999 5789999998 7899999999999 444 23555 57889999
Q ss_pred CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||||||||+++|+.+++++||+|||++++.++.
T Consensus 164 ~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 164 EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 99999999999999999999999999999988764
No 5
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=100.00 E-value=5.6e-35 Score=296.12 Aligned_cols=170 Identities=24% Similarity=0.368 Sum_probs=147.8
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCC
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSD 166 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~ 166 (921)
||+|||+..+..++++.+++++++|+++||||+|++++.++.++++.+.++|+. +++++|||++|+|.++++|||||++
T Consensus 1 ly~It~~~~~~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~ 80 (180)
T PF02581_consen 1 LYLITDPRLCGDDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQ 80 (180)
T ss_dssp EEEEE-STTSTCHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBT
T ss_pred CEEEeCCchhcchHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecc
Confidence 799999988767899999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCCCE
Q 002437 167 QGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKIPI 238 (921)
Q Consensus 167 ~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~Pv 238 (921)
.+++...+|+.++ ++ + +||+||||.+|+.+| .+.|+||++|||| |.+++ |+. ..++++.+++||
T Consensus 81 ~~~~~~~~r~~~~---~~-~---~ig~S~h~~~e~~~a-~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv 152 (180)
T PF02581_consen 81 SDLPPAEARKLLG---PD-K---IIGASCHSLEEAREA-EELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPV 152 (180)
T ss_dssp TSSSHHHHHHHHT---TT-S---EEEEEESSHHHHHHH-HHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCE
T ss_pred cccchHHhhhhcc---cc-e---EEEeecCcHHHHHHh-hhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCE
Confidence 9999999999886 66 3 899999999999999 7899999999999 44433 333 478899999999
Q ss_pred EEEcCCCccChHHHHHcCCcEEEEeec
Q 002437 239 FIMNASPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 239 ~aiGGi~~~~~~~~~~~Ga~gva~~~a 265 (921)
||||||+++|+.+++++||+|||+++|
T Consensus 153 ~AlGGI~~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 153 YALGGITPENIPELREAGADGVAVISA 179 (180)
T ss_dssp EEESS--TTTHHHHHHTT-SEEEESHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEEEee
Confidence 999999999999999999999998876
No 6
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=100.00 E-value=8.8e-33 Score=303.74 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=153.4
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEE
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVL 163 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvH 163 (921)
...||+|||+. +++++++++|+++||||+|+++..+++++++++.++|+. +++|||||++++|.++||||||
T Consensus 210 ~l~LY~Vtd~~-------~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVH 282 (437)
T PRK12290 210 SLGLYPVVDDV-------EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVH 282 (437)
T ss_pred CceEEEEeCCH-------HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEE
Confidence 45699999872 579999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCC----CCCcc-hhhhhhcC
Q 002437 164 LSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQ----KADVI-ENSLFTNV 234 (921)
Q Consensus 164 L~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~----~~g~~-~~~~~~~~ 234 (921)
|||+|++...+|+++| ++ + +||+|||+.+|+.+| ...|+|||++||| ||+ +.|++ .+++++..
T Consensus 283 LGQeDL~~~~aR~ilg---~~-~---iIGvStHs~eEl~~A-~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~ 354 (437)
T PRK12290 283 LGQEDLEEANLAQLTD---AG-I---RLGLSTHGYYELLRI-VQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLI 354 (437)
T ss_pred cChHHcchhhhhhhcC---CC-C---EEEEecCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 9999999999999986 55 3 799999999999999 8999999999999 554 23554 45555443
Q ss_pred ---------CCCEEEEcCCCccChHHHHHcCCcEEEEeecccccc
Q 002437 235 ---------KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 235 ---------~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++||||||||+++|+.+++++|++||||++|.++..
T Consensus 355 ~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~ 399 (437)
T PRK12290 355 DTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAE 399 (437)
T ss_pred hhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 799999999999999999999999999999998753
No 7
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=1.7e-32 Score=282.74 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=150.0
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
+||+||+.. ..+++++++|+.+||||+|+++..++..++.++..+|+. ++++||||++++|.++++||||||
T Consensus 14 ~ly~i~~~~-------~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adGVHlg 86 (211)
T PRK03512 14 GLYPVVDSV-------QWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYGVHLG 86 (211)
T ss_pred eEEEEECCH-------HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCEEEcC
Confidence 599999872 569999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhhhc-CC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLFTN-VK 235 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~~~-~~ 235 (921)
+.|++...+|..+| ++ + +||+|||+.+++.+| .+.|+||+++||+ | |+. .|+. ...+.+. .+
T Consensus 87 ~~d~~~~~~r~~~~---~~-~---~iG~S~H~~~e~~~A-~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~ 158 (211)
T PRK03512 87 QEDLETADLNAIRA---AG-L---RLGVSTHDDMEIDVA-LAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLAD 158 (211)
T ss_pred hHhCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999876 55 3 899999999999999 7899999999999 4 442 2333 3555555 58
Q ss_pred CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 ~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||||||||+++|+.+++++|++|||++++.++.
T Consensus 159 ~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 159 YPTVAIGGISLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred CCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 9999999999999999999999999999988764
No 8
>PRK08999 hypothetical protein; Provisional
Probab=100.00 E-value=2e-32 Score=303.12 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=166.2
Q ss_pred cccccccccCCCCCCCC--ccCCCCceEEEEcCCCCCC-CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Q 002437 63 EKQQRPRTLYPGGYKRP--EIKVPNVVLQLEPHQVLAG-GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVV 139 (921)
Q Consensus 63 ~~~~~~~~~~~~~~~~~--~~~l~~~~lylit~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~ 139 (921)
...+.....||+.++.. .+.+| ++|+|||+.... ..+++.+++++.+|+++||||+|+.+..++.++++.++.+|
T Consensus 107 ~~~el~~~~~~~~~~~i~~~l~lp--~ly~it~~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~ 184 (312)
T PRK08999 107 APDELAVYPFPPANQPIVRALRLP--DTYLITPEGEDGDAAFLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLC 184 (312)
T ss_pred cHHHcccCCCCcchHHHHHHhcCC--CEEEEECccccccHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34445555666554443 33556 999999987765 36789999999999999999999999999999999999999
Q ss_pred hc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC
Q 002437 140 KD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG 218 (921)
Q Consensus 140 ~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv 218 (921)
++ +++|||||++|+|.++|+||||||+.|++...+|+ ++ ++ + +||+||||.+++.+| ...|+||+++||+
T Consensus 185 ~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~-~~---~~-~---~ig~S~h~~~~~~~a-~~~~~dyi~~gpv 255 (312)
T PRK08999 185 RRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARP-LP---AG-R---WVAASCHDAEELARA-QRLGVDFAVLSPV 255 (312)
T ss_pred HHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhcc-CC---CC-C---EEEEecCCHHHHHHH-HhcCCCEEEECCC
Confidence 99 99999999999999999999999999999988888 65 56 3 799999999999999 7999999999999
Q ss_pred --CCCC-----CCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 219 --EGQK-----ADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 219 --Tk~~-----~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
|.++ .|+. .+++++.+++||||||||+++|+.+++++||+|||++++.
T Consensus 256 f~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 256 QPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 4332 3444 5788888999999999999999999999999999888764
No 9
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.96 E-value=2.9e-28 Score=285.83 Aligned_cols=177 Identities=23% Similarity=0.325 Sum_probs=159.6
Q ss_pred CceEEEEcCCCCC---CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCC
Q 002437 85 NVVLQLEPHQVLA---GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNAS 160 (921)
Q Consensus 85 ~~~lylit~~~~~---~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~ 160 (921)
.+++|+|||+... ...+++.+++++++|+.+||||+|+++.+++++++++++++|+. +++|||||++++|.++|+|
T Consensus 290 ~~~ly~it~~~~~~~~~~~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~ad 369 (502)
T PLN02898 290 NLFLYAVTDSGMNKKWGRSTVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDAD 369 (502)
T ss_pred CceEEEEECccccccccchHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCC
Confidence 3579999998553 34688999999999999999999999999999999999999999 9999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-hhhhhh
Q 002437 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI-ENSLFT 232 (921)
Q Consensus 161 GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~-~~~~~~ 232 (921)
||||++.|++...+|+.++ ++ + +||+|||+.+|+.+| .+.||||+++||+ ||+. .|++ .+++++
T Consensus 370 GvHl~~~d~~~~~~r~~~~---~~-~---~iG~S~h~~~e~~~a-~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~ 441 (502)
T PLN02898 370 GVHLGQSDMPVRLARSLLG---PG-K---IIGVSCKTPEQAEQA-WKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCE 441 (502)
T ss_pred EEEeChHhcCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999886 66 3 799999999999999 7999999999999 4432 2444 578888
Q ss_pred cCCCCEEEEcCCCccChHHHHHcCCc---EEEEeeccccc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKSGAS---GFVISLEDLSL 269 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~Ga~---gva~~~a~~~~ 269 (921)
..++||||||||+++|+.+++++|++ |||++++.+..
T Consensus 442 ~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 442 ASKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred cCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 88999999999999999999999999 99999988753
No 10
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.96 E-value=6.2e-28 Score=248.93 Aligned_cols=175 Identities=23% Similarity=0.320 Sum_probs=155.4
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
++|+|||+..+..++++.+++++++|+++||||.|+.++.++.+.+.++..+|+. +++|++|+++++|.++|+|||||+
T Consensus 1 ~ly~it~~~~~~~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~~~la~~~g~~GvHl~ 80 (196)
T TIGR00693 1 GLYLITDPQDGPADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALALGADGVHLG 80 (196)
T ss_pred CEEEEECCccccccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECHHHHHHHcCCCEEecC
Confidence 4899999876655789999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC--C--Ccc-hhhhhhcC-C
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK--A--DVI-ENSLFTNV-K 235 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~--~--g~~-~~~~~~~~-~ 235 (921)
+.+++...+|+.++ ++ . ++|+|||+.+++.+| .+.|+||+++||+ ||+. + |++ ..++++.. +
T Consensus 81 ~~~~~~~~~r~~~~---~~-~---~ig~s~h~~~e~~~a-~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~ 152 (196)
T TIGR00693 81 QDDLPASEARALLG---PD-K---IIGVSTHNLEELAEA-EAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSID 152 (196)
T ss_pred cccCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999875 44 2 799999999999998 7999999999999 3432 2 444 46776655 5
Q ss_pred CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 ~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||+|+|||+++|+.++.++|++|||+.++.++.
T Consensus 153 ~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 9999999999999999999999999888887754
No 11
>PRK09866 hypothetical protein; Provisional
Probab=99.95 E-value=1.7e-24 Score=245.33 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC
Q 002437 330 ERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL 409 (921)
Q Consensus 330 ~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~ 409 (921)
+++.+.+.+..+++...++.. ..+.++|+|++|+|||||+|+|+|..++|++..++|..++.+.++..
T Consensus 47 drR~i~~ri~~L~~~L~Kv~~------------~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg 114 (741)
T PRK09866 47 SQPNIAERHAMLNNELRKISR------------LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPG 114 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHhc------------cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCC
Confidence 445666666666654322221 23899999999999999999999999999998888888888776542
Q ss_pred ccchh---------------------------------------hcccccCCC---------------------------
Q 002437 410 ASEEQ---------------------------------------QRCERHPDG--------------------------- 423 (921)
Q Consensus 410 ~~~~~---------------------------------------~~~~~~~~g--------------------------- 423 (921)
..... .......+|
T Consensus 115 ~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~ 194 (741)
T PRK09866 115 QKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLA 194 (741)
T ss_pred cCceeeecCCccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHH
Confidence 11100 000000000
Q ss_pred ----------eE----------Ee----ecCCCcccccEEEeCCCCChhhhH-HHHHHHHhcCCCCEEEEEEeCCCCCCH
Q 002437 424 ----------QY----------IC----YLPSPILKEMIIVDTPGTNVILQR-QQRLTEEFVPRADLVLFVISADRPLTE 478 (921)
Q Consensus 424 ----------~~----------~~----~~p~~~l~~l~lvDTPG~~~~~~~-~~~~~~~~l~~aD~il~V~da~~~~t~ 478 (921)
.| +- ..+.....+++||||||++..... ....+.+.+.++|+||||+|+.+..+.
T Consensus 195 ~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~ 274 (741)
T PRK09866 195 KALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSI 274 (741)
T ss_pred HhhcCCCcHHHHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCCh
Confidence 00 00 112233467999999999865333 455566789999999999999988888
Q ss_pred HHHHHHHHhhhcCC--eEEEEEeCCCCCCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhc-----cc--c
Q 002437 479 SEVVFLRYTQQWKK--KVVFVLNKSDLYQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKL-----SV--S 548 (921)
Q Consensus 479 ~e~~~l~~l~~~~~--~vivVlNK~D~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~-----~~--~ 548 (921)
.+..+++.++..++ |+|+|+||+|....+ ++.+.+...+...+... ......||||||+.+.+... .. .
T Consensus 275 ~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~-~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 275 SDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKG-CITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhc-CCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 99999999988775 999999999987432 23455555555443332 22456899999999765432 00 0
Q ss_pred -ccc--------------ccCccc---------ccccCccccccchHHHHHHHHHhhccCCccchHHHHHhhcCHHHHHH
Q 002437 549 -SAV--------------GKDHSE---------LSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAE 604 (921)
Q Consensus 549 -~~~--------------~~~~~~---------~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~ 604 (921)
++. +..+.+ ....+.+|++|||+.+.+.+.+.+. ..+....+.+....+.
T Consensus 354 l~~~~~~~wv~dfa~~~~gr~w~e~d~~d~e~l~~~A~~lwedS~~~~~i~~~i~~~~------~~a~~~al~sa~~kl~ 427 (741)
T PRK09866 354 LPPPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAY------ANASLYALRSAAHKLL 427 (741)
T ss_pred CCchhhhHHHHHHHHHHhccccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH------HhhHHHHHHHHHHHHH
Confidence 000 111100 1123368999999999999998888 4455556777778888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 605 RLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIEST 671 (921)
Q Consensus 605 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~~~l~~~ 671 (921)
+..+.+++.+.-....+....+.++..+..++...+.++.+.......+...++.....+..++...
T Consensus 428 ~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (741)
T PRK09866 428 NYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQ 494 (741)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777787888888888888888888877777777777777777777777776664
No 12
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.95 E-value=6.6e-27 Score=241.71 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=151.7
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEecCcHHHHHhCCCCeEEcC
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
+.+|+|||+......+...++ ++++|+.+||||+|+++..++.+++..+.+.|..+..++|||++++|..+++|||||+
T Consensus 2 ~~l~~it~~~~~~~~~~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~ 80 (201)
T PRK07695 2 NELHVISNGHQSFEELVAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLG 80 (201)
T ss_pred cEEEEEECCccccchHHHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeC
Confidence 589999998766556666665 8999999999999999999999999999998876668999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCCC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKIP 237 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~P 237 (921)
+.+++...+|+.. |+ . +||+|||+.+++.+| .+.|+||+++||+ |.+++ |+. .+++++.+++|
T Consensus 81 ~~~~~~~~~r~~~----~~-~---~ig~s~~s~e~a~~a-~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ip 151 (201)
T PRK07695 81 YRSFSVRSVREKF----PY-L---HVGYSVHSLEEAIQA-EKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIP 151 (201)
T ss_pred cccCCHHHHHHhC----CC-C---EEEEeCCCHHHHHHH-HHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 9999998999876 55 3 699999999999999 8999999999998 43322 333 47778888999
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+|+|||+++|+.++.++|++||+++++.++
T Consensus 152 via~GGI~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 152 VIAIGGITPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 9999999999999999999999998888875
No 13
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.95 E-value=8.6e-27 Score=283.74 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=154.2
Q ss_pred ceEEEEcCCCCCC--CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 86 VVLQLEPHQVLAG--GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 86 ~~lylit~~~~~~--~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
.++|+|||+..+. ..+++.+++++++|+++||||+|++++.++..+++++.++|+. |++|||||++|+|.++|+| |
T Consensus 4 ~~ly~It~~~~~~~~~~~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~d-V 82 (755)
T PRK09517 4 FSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLH-V 82 (755)
T ss_pred eEEEEEECCccccCcccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC-e
Confidence 4699999986543 3688999999999999999999999999999999999999999 9999999999999999999 9
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHccc---ccC---CCCEEEeCCC----CCCC----CCcc-h
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS---SSE---GADFLVCCFG----EGQK----ADVI-E 227 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~---~~~---gaDyv~~gpv----Tk~~----~g~~-~ 227 (921)
|||+.|++...+|+.++ ++ . +||+|||+.+|+..|. ... ||||+++||| ||+. .|++ .
T Consensus 83 Hlg~~dl~~~~~r~~~~---~~-~---~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l 155 (755)
T PRK09517 83 HIGQGDTPYTQARRLLP---AH-L---ELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGI 155 (755)
T ss_pred ecCCCcCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHH
Confidence 99999999999999986 55 3 7999999999986530 122 4999999999 5542 2444 5
Q ss_pred hhhhhcCC---CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNVK---IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~---~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++++.++ +||||||||+++|+.+++++||+|||++++.++.
T Consensus 156 ~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 156 AEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred HHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCC
Confidence 78888777 9999999999999999999999999999998864
No 14
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.91 E-value=1.5e-23 Score=219.18 Aligned_cols=176 Identities=24% Similarity=0.306 Sum_probs=153.8
Q ss_pred CCCceEEEEcCCCCCC-CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCC
Q 002437 83 VPNVVLQLEPHQVLAG-GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNAS 160 (921)
Q Consensus 83 l~~~~lylit~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~ 160 (921)
+| ++|+|||+..+. ..+.+.++.++++|+++||||.++.+..++...++++.++|+. ++.+++|+++++|.++|+|
T Consensus 6 ~~--~~~~it~~~~~~~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad 83 (212)
T PRK00043 6 LL--RLYLITDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGAD 83 (212)
T ss_pred CC--CEEEEECCcccccccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC
Confidence 56 899999986543 3688999999999999999999999999999999999999998 9999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhh
Q 002437 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLF 231 (921)
Q Consensus 161 GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~ 231 (921)
|||+++.+.+...+++..+ +. . ++|+||||.+++.+| ...|+|||++||+ | |+. .|+. ..+++
T Consensus 84 ~vh~~~~~~~~~~~~~~~~---~~-~---~~g~~~~t~~e~~~a-~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~ 155 (212)
T PRK00043 84 GVHLGQDDLPVADARALLG---PD-A---IIGLSTHTLEEAAAA-LAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIR 155 (212)
T ss_pred EEecCcccCCHHHHHHHcC---CC-C---EEEEeCCCHHHHHHH-hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHH
Confidence 9999999888888888764 34 2 799999999999999 7999999999998 3 332 2344 57777
Q ss_pred hcCC-CCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 232 TNVK-IPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 232 ~~~~-~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+..+ +||+|+|||+++|+.++.++||+||++.++.++
T Consensus 156 ~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 156 AAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred HhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhc
Confidence 7777 999999999999999999999999998887654
No 15
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.88 E-value=7e-22 Score=203.80 Aligned_cols=174 Identities=25% Similarity=0.372 Sum_probs=151.7
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCC
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSD 166 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~ 166 (921)
+|+|||+..+..++.+.+++++++|++.||||.++.+..++.+.+..+.+.|.. |+.+++|+++++|.++|+||+|++.
T Consensus 1 l~~it~~~~~~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 1 LYLITDRRLDGEDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVHLGQ 80 (196)
T ss_pred CEEEeCCccccchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCc
Confidence 699999977656888999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred CCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC------Ccc-hhhhhhcCCCC
Q 002437 167 QGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA------DVI-ENSLFTNVKIP 237 (921)
Q Consensus 167 ~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~------g~~-~~~~~~~~~~P 237 (921)
.+.+...+++..+ .. . ++|+|||+.+++.+| ...|+||+++||+ |..++ ++. ..++++..++|
T Consensus 81 ~~~~~~~~~~~~~---~~-~---~~g~~~~t~~~~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 152 (196)
T cd00564 81 DDLPVAEARALLG---PD-L---IIGVSTHSLEEALRA-EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIP 152 (196)
T ss_pred ccCCHHHHHHHcC---CC-C---EEEeeCCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 8888788888763 23 2 799999999999999 7899999999998 33322 233 46677778899
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+|+|||+++|+.++.++|++||++.++.+..
T Consensus 153 v~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 153 VVAIGGITPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEehHhhcC
Confidence 99999999999999999999999988877653
No 16
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.86 E-value=9.9e-22 Score=199.14 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=140.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
.+..+.+++++++|+++||||.|+.+..++++.++++.+.|.. ...+++||++|+|.++||||||.|.-+.+...++..
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~~~~~ 103 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIEAAVA 103 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 4778999999999999999999999999999999999999966 678999999999999999999999888877777776
Q ss_pred cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHHHHc
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKS 255 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~ 255 (921)
.+ .. . ++| |||++|+.+| .+.|+||+.+=| |++..|+. .+.++... ++|++|+|||+++|+.+++++
T Consensus 104 ~~---~~-~---i~G--~~t~~e~~~A-~~~Gadyv~~Fp-t~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~a 172 (187)
T PRK07455 104 QD---IP-I---IPG--ALTPTEIVTA-WQAGASCVKVFP-VQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQA 172 (187)
T ss_pred cC---CC-E---EcC--cCCHHHHHHH-HHCCCCEEEECc-CCcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHC
Confidence 64 44 2 678 9999999999 899999999933 65556777 68888888 599999999999999999999
Q ss_pred CCcEEEEeecccc
Q 002437 256 GASGFVISLEDLS 268 (921)
Q Consensus 256 Ga~gva~~~a~~~ 268 (921)
|+.|||++++.++
T Consensus 173 Ga~~vav~s~i~~ 185 (187)
T PRK07455 173 GAIAVGLSGQLFP 185 (187)
T ss_pred CCeEEEEehhccc
Confidence 9999999988765
No 17
>COG2262 HflX GTPases [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=201.61 Aligned_cols=313 Identities=20% Similarity=0.192 Sum_probs=215.4
Q ss_pred CHHHHHcccccCCCCEEEeCCC----CCCCC----Ccc-h---hhhhhcCCCCEEEE-cCCCccChHHHHH-cCCcEEEE
Q 002437 197 TLDAAFNASSSEGADFLVCCFG----EGQKA----DVI-E---NSLFTNVKIPIFIM-NASPLVDVSKFLK-SGASGFVI 262 (921)
Q Consensus 197 ~~~e~~~A~~~~gaDyv~~gpv----Tk~~~----g~~-~---~~~~~~~~~Pv~ai-GGi~~~~~~~~~~-~Ga~gva~ 262 (921)
+.+|+..- ...|+|=+++-+ .+++| |-+ . .+..+....-++.. +=++|.....+.+ .|+.=|
T Consensus 21 ~leEl~~L--a~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVI-- 96 (411)
T COG2262 21 SLEELAEL--AETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQLRNLEKELGVKVI-- 96 (411)
T ss_pred hHHHHHHH--HHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHCCEEE--
Confidence 55665543 234566666655 33333 333 2 44455555555554 3456654443332 244333
Q ss_pred eecccccchHHHHHhhhccc-CCCccc-ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHH
Q 002437 263 SLEDLSLFNDGVLSQMFCAN-GTTNEK-TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDV 340 (921)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 340 (921)
-=.. ++=..|... .+...+ |++++++.+...+.... +...++..+++++.|+++..+|.+++.+.+.+..
T Consensus 97 --DRt~-----LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~-~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~ 168 (411)
T COG2262 97 --DRTQ-----LILDIFAQRARSREGKLQVELAQLRYELPRLVGS-GSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAK 168 (411)
T ss_pred --ehHh-----HHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhh-hhhcccccCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 1111 111223222 223333 99999999998886663 3344466789999999999999999999999999
Q ss_pred HHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc
Q 002437 341 IKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420 (921)
Q Consensus 341 l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~ 420 (921)
+++.+..++..+...+..+.....+.|+++|.||||||||+|+|++......+..++|-+++.-... .
T Consensus 169 i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~------------l 236 (411)
T COG2262 169 LKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE------------L 236 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE------------e
Confidence 9999888888888777777777899999999999999999999999998888888887766553322 2
Q ss_pred CCCeEEeecCCCcccccEEEeCCCCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH----HHHHhhhcCC
Q 002437 421 PDGQYICYLPSPILKEMIIVDTPGTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVV----FLRYTQQWKK 492 (921)
Q Consensus 421 ~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~----~l~~l~~~~~ 492 (921)
++| +.+.+.||-|+-...+ .-+..|.+....||++++|+|+++|......+ +|..+....+
T Consensus 237 ~~g-----------~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~ 305 (411)
T COG2262 237 GDG-----------RKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEI 305 (411)
T ss_pred CCC-----------ceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCC
Confidence 222 3589999999954433 23566888889999999999999986554443 5566655678
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHH
Q 002437 493 KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDK 572 (921)
Q Consensus 493 ~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~ 572 (921)
|+|+|+||+|+..+.. ....+.. ..+..+++||+++ .|++.
T Consensus 306 p~i~v~NKiD~~~~~~----~~~~~~~--------~~~~~v~iSA~~~---------------------------~gl~~ 346 (411)
T COG2262 306 PIILVLNKIDLLEDEE----ILAELER--------GSPNPVFISAKTG---------------------------EGLDL 346 (411)
T ss_pred CEEEEEecccccCchh----hhhhhhh--------cCCCeEEEEeccC---------------------------cCHHH
Confidence 9999999999986632 1111111 1136899999987 78999
Q ss_pred HHHHHHHhhcc
Q 002437 573 LEKLLYSFLDG 583 (921)
Q Consensus 573 L~~~l~~~l~~ 583 (921)
|.+.|.+.+..
T Consensus 347 L~~~i~~~l~~ 357 (411)
T COG2262 347 LRERIIELLSG 357 (411)
T ss_pred HHHHHHHHhhh
Confidence 99999988874
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=6.3e-20 Score=204.40 Aligned_cols=227 Identities=24% Similarity=0.212 Sum_probs=160.8
Q ss_pred ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEE
Q 002437 289 TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV 368 (921)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 368 (921)
+++++++.+.-...... +...+++.+++++.+++++.++.+++.+.+.+..+++.+..+...+...+..+..+..++|+
T Consensus 115 qv~la~l~~~l~r~~~~-~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~Va 193 (351)
T TIGR03156 115 QVELAQLKYLLPRLVGG-WTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVA 193 (351)
T ss_pred HHHHHhccchhhhhhhh-HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEE
Confidence 78888887766554332 22367888899998888877788899999999999987666666555555544445679999
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|++.+....+..++|.+++..... .++| ..+.|+||||+...
T Consensus 194 lvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~------------~~~~-----------~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD------------LPDG-----------GEVLLTDTVGFIRD 250 (351)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEE------------eCCC-----------ceEEEEecCccccc
Confidence 999999999999999999986666666677665443221 1111 24899999998321
Q ss_pred -----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 449 -----LQRQQRLTEEFVPRADLVLFVISADRPLTESEV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 449 -----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.+. ...+.+.+..||++|+|+|++++.+..+. .++..+...++|+++|+||+|+... .+.. ...
T Consensus 251 l~~~lie~-f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-~~v~----~~~- 323 (351)
T TIGR03156 251 LPHELVAA-FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-PRIE----RLE- 323 (351)
T ss_pred CCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-HhHH----HHH-
Confidence 122 23355678999999999999988766554 3444444446899999999999743 2211 110
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. ...+++++||+++ .|+++|.+.|.+.
T Consensus 324 ------~-~~~~~i~iSAktg---------------------------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 ------E-GYPEAVFVSAKTG---------------------------EGLDLLLEAIAER 350 (351)
T ss_pred ------h-CCCCEEEEEccCC---------------------------CCHHHHHHHHHhh
Confidence 1 1246899999987 6888888887654
No 19
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=3.1e-19 Score=186.16 Aligned_cols=166 Identities=27% Similarity=0.366 Sum_probs=127.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|+||+|||||+|+|+|.++..++..|.|..... .-+... + .++++|||||
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~------------~------------~QiIfvDTPG 63 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD------------N------------AQIIFVDTPG 63 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC------------C------------ceEEEEeCCC
Confidence 68999999999999999999999998877775543222 212211 1 2599999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
++.. ...+.+.+...+.++|+|+||+|++++....+...+..++..+.|+++++||+|...++..+....+....
T Consensus 64 ih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~- 142 (298)
T COG1159 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKK- 142 (298)
T ss_pred CCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHh-
Confidence 9643 34456667778899999999999999999988889999998778999999999999775433333333332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCCccc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTG 588 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~ 588 (921)
.. +...++++||+.+ .+.+.|.+.+.+.+.+..-..
T Consensus 143 ---~~--~f~~ivpiSA~~g---------------------------~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 143 ---LL--PFKEIVPISALKG---------------------------DNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred ---hC--CcceEEEeecccc---------------------------CCHHHHHHHHHHhCCCCCCcC
Confidence 22 3458999999988 788899999999888755443
No 20
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=7.8e-19 Score=199.94 Aligned_cols=232 Identities=19% Similarity=0.136 Sum_probs=164.4
Q ss_pred ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEE
Q 002437 289 TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV 368 (921)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 368 (921)
|++++++.+.-.+... .+.+.++..+.+++.|+++..+|.+++.+.+.+..+++.+..+...+...+..+.....+.|+
T Consensus 123 qvelA~l~y~~prl~~-~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~Va 201 (426)
T PRK11058 123 QVELAQLRHLATRLVR-GWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVS 201 (426)
T ss_pred HHHHHhhhhhhhhhhc-cccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEE
Confidence 8999999998887644 345677788889999999999999999999999999987666654444333333334567999
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|++.++...+..++|.+++.....- +++ ..+.++||||+...
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l------------~~~-----------~~~~l~DTaG~~r~ 258 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV------------ADV-----------GETVLADTVGFIRH 258 (426)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe------------CCC-----------CeEEEEecCccccc
Confidence 9999999999999999998876556666666554322110 011 14789999998432
Q ss_pred hh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 449 LQ----RQQRLTEEFVPRADLVLFVISADRPLTESEV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 449 ~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
.+ +....+.+.+..||++|+|+|++++.+..+. .++..+...+.|+++|+||+|+...... .. . .
T Consensus 259 lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~-~---~- 331 (426)
T PRK11058 259 LPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RI-D---R- 331 (426)
T ss_pred CCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HH-H---H-
Confidence 11 1123355667999999999999988766654 3455555557899999999999743111 11 1 0
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ .+.++++||+++ .|++.|.+.+.+.+.
T Consensus 332 -~~-~~--~~~~v~ISAktG---------------------------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 332 -DE-EN--KPIRVWLSAQTG---------------------------AGIPLLFQALTERLS 362 (426)
T ss_pred -Hh-cC--CCceEEEeCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 01 11 123588999987 689999988888765
No 21
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=99.81 E-value=1.4e-20 Score=180.25 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH--HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002437 787 REVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLA--LGLCSAGGYIAVANFPARRQRVIEKVNKIADGLAREIEEAMQ-- 862 (921)
Q Consensus 787 ~~~~~~t~~~~g~~g~~a~~~~~i~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~~~k~r~~~~~~~~~~~~~l~-- 862 (921)
++++.....+++.+...++|++.+++|++|+++| +++++++.|+++|.|||.+|+.++|+|.+++||++|+.++|+
T Consensus 12 e~~~~~~~~~~as~~S~~s~g~liv~gvv~rtvGWrvIa~~~~~Yg~lYlYERLtWT~~AKER~fK~Qfv~hAt~KLr~i 91 (171)
T PF04799_consen 12 EEMMLSMVTGLASVTSRGSMGVLIVGGVVWRTVGWRVIAVSGSLYGGLYLYERLTWTNKAKERAFKRQFVDHATEKLRLI 91 (171)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777778888888888899999999999999 999999999999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 863 ---------KDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 863 ---------~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
+|+++||..+|++||..++..+++++.|+++|++.++.|+.++++++.|||++++|+
T Consensus 92 v~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~ 157 (171)
T PF04799_consen 92 VSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLE 157 (171)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999875
No 22
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=8e-20 Score=177.93 Aligned_cols=142 Identities=27% Similarity=0.329 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+++|.||+|||||+|+|+|.+....++..+|.......+...+ ..+.+|||||
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~------------------------~~~~lvDlPG 56 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD------------------------QQVELVDLPG 56 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT------------------------EEEEEEE---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC------------------------ceEEEEECCC
Confidence 3699999999999999999999997777777788776654443211 2489999999
Q ss_pred CChhh--hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVIL--QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~--~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+++.. ...+.++.+++ .+.|++++|+|+++ .+.+++++.++.+.+.|+++|+||+|......- ..-.+.
T Consensus 57 ~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~-----~id~~~ 129 (156)
T PF02421_consen 57 IYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGI-----EIDAEK 129 (156)
T ss_dssp -SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTE-----EE-HHH
T ss_pred cccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCC-----EECHHH
Confidence 97653 34567777887 79999999999986 367788999999999999999999997643110 001223
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.++ +||+++||+.+
T Consensus 130 Ls~~Lg---~pvi~~sa~~~ 146 (156)
T PF02421_consen 130 LSERLG---VPVIPVSARTG 146 (156)
T ss_dssp HHHHHT---S-EEEEBTTTT
T ss_pred HHHHhC---CCEEEEEeCCC
Confidence 333443 78999999987
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=3.3e-17 Score=180.30 Aligned_cols=258 Identities=22% Similarity=0.277 Sum_probs=174.0
Q ss_pred HHHHcccccCCCCEEEeCCCCCCCCCcc-----hhhhhhcCCCCEEEE----cCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQKADVI-----ENSLFTNVKIPIFIM----NASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~~~g~~-----~~~~~~~~~~Pv~ai----GGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++..| -..||.++| |.....|+. ...+....+.||+.. -+.. .++..+....|+.-+..++|...
T Consensus 75 ~Qa~~A--i~eADvilf--vVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 75 EQALIA--IEEADVILF--VVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HHHHHH--HHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhc
Confidence 344444 355899888 532333333 233333667998774 2333 44577889999998888888776
Q ss_pred cchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccH
Q 002437 269 LFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLM 348 (921)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~ 348 (921)
-=.+++++.+..... -. .......+
T Consensus 151 ~Gi~dLld~v~~~l~-~~------------------------------e~~~~~~~------------------------ 175 (444)
T COG1160 151 RGIGDLLDAVLELLP-PD------------------------------EEEEEEEE------------------------ 175 (444)
T ss_pred cCHHHHHHHHHhhcC-Cc------------------------------cccccccc------------------------
Confidence 655555554411100 00 00000000
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEe
Q 002437 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427 (921)
Q Consensus 349 ~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 427 (921)
..+.+|+|+|.||+|||||+|+|+|++-..+ ....||.+.....+...+
T Consensus 176 -------------~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~----------------- 225 (444)
T COG1160 176 -------------TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG----------------- 225 (444)
T ss_pred -------------CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------
Confidence 3679999999999999999999999975544 445577766555443221
Q ss_pred ecCCCcccccEEEeCCCCCh---hhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeC
Q 002437 428 YLPSPILKEMIIVDTPGTNV---ILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNK 500 (921)
Q Consensus 428 ~~p~~~l~~l~lvDTPG~~~---~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK 500 (921)
+.+.+|||.|+-- +.+ -...-+...+..+|++++|+|+..++++++..+...+.+.++++++|+||
T Consensus 226 -------~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNK 298 (444)
T COG1160 226 -------RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNK 298 (444)
T ss_pred -------eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3589999999831 111 11223667789999999999999999999999999999999999999999
Q ss_pred CCCCCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 501 SDLYQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 501 ~D~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
||+.... ..+++..+.++..+.. ....+++++||+.+ .|+..+.+.+.+
T Consensus 299 WDl~~~~~~~~~~~k~~i~~~l~~---l~~a~i~~iSA~~~---------------------------~~i~~l~~~i~~ 348 (444)
T COG1160 299 WDLVEEDEATMEEFKKKLRRKLPF---LDFAPIVFISALTG---------------------------QGLDKLFEAIKE 348 (444)
T ss_pred cccCCchhhHHHHHHHHHHHHhcc---ccCCeEEEEEecCC---------------------------CChHHHHHHHHH
Confidence 9998752 3455555555554332 25689999999987 678888887776
Q ss_pred hhc
Q 002437 580 FLD 582 (921)
Q Consensus 580 ~l~ 582 (921)
...
T Consensus 349 ~~~ 351 (444)
T COG1160 349 IYE 351 (444)
T ss_pred HHH
Confidence 644
No 24
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.76 E-value=5.1e-17 Score=179.30 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=141.9
Q ss_pred hhhccccCCCch--HHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 311 ERVAGFVKFEDR--EKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 311 ~~~~~~~~~~~~--~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+.++..+||.+. .....+.....+....+.+++ +....+..+.+.+.++++++|.||+|||||+|+|++++
T Consensus 169 a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~-------ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d 241 (454)
T COG0486 169 AQVEANIDFPEEDIEELVLEKIREKLEELIAELDE-------LLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD 241 (454)
T ss_pred HHheEeCCCCcccccchhHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC
Confidence 456677777665 112222233333333333333 22233344456688999999999999999999999997
Q ss_pred CCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh----hhHHHHHHHHhcCCC
Q 002437 389 YLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI----LQRQQRLTEEFVPRA 463 (921)
Q Consensus 389 ~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~----~~~~~~~~~~~l~~a 463 (921)
... ++...||+++....+.-. |. .+.|+||.|+-.. ....-+...+.+..|
T Consensus 242 ~AIVTdI~GTTRDviee~i~i~-------------G~-----------pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~A 297 (454)
T COG0486 242 RAIVTDIAGTTRDVIEEDINLN-------------GI-----------PVRLVDTAGIRETDDVVERIGIERAKKAIEEA 297 (454)
T ss_pred ceEecCCCCCccceEEEEEEEC-------------CE-----------EEEEEecCCcccCccHHHHHHHHHHHHHHHhC
Confidence 664 667778888766544322 21 4899999999422 222345577788999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHh
Q 002437 464 DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEA 543 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a 543 (921)
|+|+||+|++.+.+..+..++. ....++|+++|+||.|+..... .... . -....+++.+|++++
T Consensus 298 DlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~-~~~~---------~--~~~~~~~i~iSa~t~--- 361 (454)
T COG0486 298 DLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE-LESE---------K--LANGDAIISISAKTG--- 361 (454)
T ss_pred CEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc-cchh---------h--ccCCCceEEEEecCc---
Confidence 9999999999988888888877 5566799999999999986532 1110 0 112457999999987
Q ss_pred hcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 544 KLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.|++.|++.|.+++...
T Consensus 362 ------------------------~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 ------------------------EGLDALREAIKQLFGKG 378 (454)
T ss_pred ------------------------cCHHHHHHHHHHHHhhc
Confidence 79999999999887753
No 25
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.75 E-value=2.5e-18 Score=181.16 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=137.6
Q ss_pred EEEEcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCC--CHHHHH--HHHHHHHHHhhc--CceEEe---cCcHHHHHh
Q 002437 88 LQLEPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEA--SGKSVY--EAACLLKSVVKD--RALFLI---AERVDIAAA 156 (921)
Q Consensus 88 lylit~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~--~~a~~l~~~~~~--~~~~iv---nd~~dla~~ 156 (921)
-|+|+|...+.+ .+.+.+++++++|+++||||.++. .+...+ +.++.++++|+. ++.|++ ||+++++.+
T Consensus 7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 7 DAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHH
Confidence 467888765444 778899999999999999999988 444444 689999999865 789999 799999999
Q ss_pred CCCCeE--EcCC--CCCCHHHHHHhcccCCCCccccCeEEEecC--CHHHHHcccccCC--CCEEEeCCC----CCCCC-
Q 002437 157 VNASGV--LLSD--QGLPAIVARNTMKDSMSESVVLPLVGRNVQ--TLDAAFNASSSEG--ADFLVCCFG----EGQKA- 223 (921)
Q Consensus 157 ~~a~Gv--HL~~--~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h--~~~e~~~A~~~~g--aDyv~~gpv----Tk~~~- 223 (921)
+||||| |++| .+.+...+|...+ ++ . .+|.||| ++.+..++ ...+ +||+++||+ |+...
T Consensus 87 ~gad~v~vH~~q~~~d~~~~~~~~i~~---~g-~---~iGls~~~~t~~~~~~~-~~~~~~~Dyi~~~~v~pg~~~~~~~ 158 (229)
T PLN02334 87 AGASIFTFHIEQASTIHLHRLIQQIKS---AG-M---KAGVVLNPGTPVEAVEP-VVEKGLVDMVLVMSVEPGFGGQSFI 158 (229)
T ss_pred cCCCEEEEeeccccchhHHHHHHHHHH---CC-C---eEEEEECCCCCHHHHHH-HHhccCCCEEEEEEEecCCCccccC
Confidence 999999 9996 7778888888875 44 3 6899998 55554444 3344 999999999 33321
Q ss_pred --Ccc-hhhhhhc-CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 224 --DVI-ENSLFTN-VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 224 --g~~-~~~~~~~-~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++. ..++++. .++|++|+|||+++|+.++.++|+++|++.++.++.
T Consensus 159 ~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 159 PSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 232 3556655 358999999999999999999999999999887763
No 26
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=6.7e-17 Score=167.91 Aligned_cols=193 Identities=27% Similarity=0.330 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEE
Q 002437 325 QLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFL 404 (921)
Q Consensus 325 ~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~ 404 (921)
+.++.+...+++.++.+++......+.+......+..+..++|+|+|.+|+|||||+|.|++..+.+.+...+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~ 81 (204)
T cd01878 2 TQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR 81 (204)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE
Confidence 35677888888888888886655555554444444345668999999999999999999999875544443333322221
Q ss_pred EccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh-----hHHHHHHHHhcCCCCEEEEEEeCCCCCCHH
Q 002437 405 RFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL-----QRQQRLTEEFVPRADLVLFVISADRPLTES 479 (921)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~-----~~~~~~~~~~l~~aD~il~V~da~~~~t~~ 479 (921)
.... .++ ..+.+|||||+.... ..... +...+..+|++++|+|++++.+..
T Consensus 82 ~~~~------------~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~d~ii~v~D~~~~~~~~ 137 (204)
T cd01878 82 RLRL------------PDG-----------REVLLTDTVGFIRDLPHQLVEAFRS-TLEEVAEADLLLHVVDASDPDYEE 137 (204)
T ss_pred EEEe------------cCC-----------ceEEEeCCCccccCCCHHHHHHHHH-HHHHHhcCCeEEEEEECCCCChhh
Confidence 1100 000 148999999984321 11111 223467899999999999876655
Q ss_pred HH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCc
Q 002437 480 EV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDH 555 (921)
Q Consensus 480 e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~ 555 (921)
+. +++..+...+.|+++|+||+|+.... ... ........+++++||+.+
T Consensus 138 ~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-~~~-----------~~~~~~~~~~~~~Sa~~~--------------- 190 (204)
T cd01878 138 QIETVEKVLKELGAEDIPMILVLNKIDLLDDE-ELE-----------ERLEAGRPDAVFISAKTG--------------- 190 (204)
T ss_pred HHHHHHHHHHHcCcCCCCEEEEEEccccCChH-HHH-----------HHhhcCCCceEEEEcCCC---------------
Confidence 43 33444444468999999999997542 111 111223568999999987
Q ss_pred ccccccCccccccchHHHHHHHHHh
Q 002437 556 SELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 556 ~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.|++++.+.|...
T Consensus 191 ------------~gi~~l~~~L~~~ 203 (204)
T cd01878 191 ------------EGLDELLEAIEEL 203 (204)
T ss_pred ------------CCHHHHHHHHHhh
Confidence 6888888777654
No 27
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.75 E-value=9.2e-17 Score=185.33 Aligned_cols=200 Identities=27% Similarity=0.342 Sum_probs=133.0
Q ss_pred hhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 311 ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 311 ~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
+.+++.+||.++. ..+..++.+.+.+..+++....+. .-.+..+.+...++|+++|.+|+|||||+|+|++.+..
T Consensus 167 a~iea~iDf~ee~--~~~~~~~~i~~~i~~l~~~l~~l~---~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a 241 (449)
T PRK05291 167 ALVEAAIDFPEED--IEFLSDEKILEKLEELIAELEALL---ASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERA 241 (449)
T ss_pred HHheEEccCCCCC--cccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4566777876642 223444555555555555332222 22233344556789999999999999999999998764
Q ss_pred C-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhHH----HHHHHHhcCCCCE
Q 002437 391 K-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQ----QRLTEEFVPRADL 465 (921)
Q Consensus 391 ~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~----~~~~~~~l~~aD~ 465 (921)
. ....+||..+....+.. +| ..+.++||||+....... ...+..++..+|+
T Consensus 242 ~v~~~~gtT~d~~~~~i~~-------------~g-----------~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~ 297 (449)
T PRK05291 242 IVTDIAGTTRDVIEEHINL-------------DG-----------IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADL 297 (449)
T ss_pred ccCCCCCcccccEEEEEEE-------------CC-----------eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCE
Confidence 3 44445665443322211 11 148999999985432211 2335667899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhc
Q 002437 466 VLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKL 545 (921)
Q Consensus 466 il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~ 545 (921)
++||+|++++.+..+..++.. ..+.|+++|+||+|+.... ... .....+++++||+++
T Consensus 298 il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~-~~~--------------~~~~~~~i~iSAktg----- 355 (449)
T PRK05291 298 VLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI-DLE--------------EENGKPVIRISAKTG----- 355 (449)
T ss_pred EEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc-hhh--------------hccCCceEEEEeeCC-----
Confidence 999999998887777766655 4568999999999997542 111 112467999999987
Q ss_pred ccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 546 SVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.|+++|.+.+.+.+..
T Consensus 356 ----------------------~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 ----------------------EGIDELREAIKELAFG 371 (449)
T ss_pred ----------------------CCHHHHHHHHHHHHhh
Confidence 6899999999887753
No 28
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=3.8e-17 Score=179.85 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=118.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+.|+++|.||+|||||+|.|+|++...+... .+|++..+....- .+ +.+.+|||+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-------------~~-----------~~f~lIDTg 59 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-------------LG-----------REFILIDTG 59 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-------------cC-----------ceEEEEECC
Confidence 7899999999999999999999987765544 4565543321110 00 359999999
Q ss_pred CCChh-----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVI-----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~-----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+... .....+.+...+.+||++|||+|+..+.+..+.++.+.++..++|+|+|+||+|....++
T Consensus 60 Gl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~---------- 129 (444)
T COG1160 60 GLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE---------- 129 (444)
T ss_pred CCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh----------
Confidence 99632 344566677888999999999999999999999999999988899999999999773321
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+++......++++||..+ .|+.+|.+.+.+.+
T Consensus 130 -~~~efyslG~g~~~~ISA~Hg---------------------------~Gi~dLld~v~~~l 164 (444)
T COG1160 130 -LAYEFYSLGFGEPVPISAEHG---------------------------RGIGDLLDAVLELL 164 (444)
T ss_pred -hHHHHHhcCCCCceEeehhhc---------------------------cCHHHHHHHHHhhc
Confidence 122333334567999999887 68888888888776
No 29
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.72 E-value=1.8e-17 Score=166.57 Aligned_cols=135 Identities=38% Similarity=0.621 Sum_probs=103.6
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh---------------------------hcccc
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ---------------------------QRCER 419 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~---------------------------~~~~~ 419 (921)
|+|+|.+++|||||||+|+|.+++|.+..|+|..++.+.++....... .....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999999999999999999999875543110 00000
Q ss_pred -----cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-hcCCe
Q 002437 420 -----HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-QWKKK 493 (921)
Q Consensus 420 -----~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-~~~~~ 493 (921)
...-........+...++.||||||+++....+..++.+++..+|++|||+++++..+..+..++.... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 000112334445566789999999998777777789999999999999999999999888888777654 46677
Q ss_pred EEEEEeCC
Q 002437 494 VVFVLNKS 501 (921)
Q Consensus 494 vivVlNK~ 501 (921)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999985
No 30
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.72 E-value=1.5e-16 Score=172.46 Aligned_cols=161 Identities=24% Similarity=0.271 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|.+|+|||||+|+|+|.++..++.. .||.......+.. ++ ..+.++||||
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-------------~~-----------~qii~vDTPG 57 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-------------GA-----------SQIIFIDTPG 57 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-------------CC-----------cEEEEEECcC
Confidence 589999999999999999999987654443 4555422111110 00 1489999999
Q ss_pred CChhh----hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVIL----QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~----~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+.... ......+..++..+|+++||+|+++..+.. ..++..+...+.|+++|+||+|+... +... .....
T Consensus 58 ~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~-~~~~---~~~~~- 131 (270)
T TIGR00436 58 FHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK-DKLL---PLIDK- 131 (270)
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH-HHHH---HHHHH-
Confidence 86432 122334567789999999999999876554 45666777788999999999999743 2222 22211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
+..... ..+++++||+.+ .|+++|.+.+.+.+.+..
T Consensus 132 ~~~~~~--~~~v~~iSA~~g---------------------------~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 132 YAILED--FKDIVPISALTG---------------------------DNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred HHhhcC--CCceEEEecCCC---------------------------CCHHHHHHHHHHhCCCCC
Confidence 111112 237999999987 799999999998876533
No 31
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.7e-16 Score=154.31 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=122.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC-CCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR-YLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..+-|+|+|++|+|||||||+|++.+ +..++..| .|..+..+.+.+ .+.+|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---------------------------~~~lV 75 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---------------------------ELRLV 75 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---------------------------cEEEE
Confidence 56799999999999999999999976 45555554 677776665542 38899
Q ss_pred eCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|.||++-. .+.+...+.+|+. .-.+++.++|+.++....+.++++.+...+.|+++|+||+|.+.. .+..
T Consensus 76 DlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~-~~~~ 154 (200)
T COG0218 76 DLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK-SERN 154 (200)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh-hHHH
Confidence 99999622 3445667777773 356789999999999999999999999999999999999999965 3444
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+.+.+..... ....++.+|+... .|+++|.+.|.+.+.
T Consensus 155 k~l~~v~~~l~~~~~-~~~~~~~~ss~~k---------------------------~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 155 KQLNKVAEELKKPPP-DDQWVVLFSSLKK---------------------------KGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHhcCCCC-ccceEEEEecccc---------------------------cCHHHHHHHHHHHhh
Confidence 444555544332221 2222777787664 689999998887765
No 32
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=3.2e-16 Score=172.17 Aligned_cols=163 Identities=29% Similarity=0.406 Sum_probs=117.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
-.|+++|.+|+|||||+|+|+|.++...+..|.|........... ++ .+++++||||
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~------------~~-----------~qi~~iDTPG 62 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE------------DD-----------AQIIFVDTPG 62 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc------------CC-----------ceEEEEECCC
Confidence 468999999999999999999998876555554432211111000 00 2589999999
Q ss_pred CChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+..... .....+...+..+|+++||+|++++.+..+..++..+...+.|+++|+||+|+..+.+.+....+.+.+
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~- 141 (292)
T PRK00089 63 IHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE- 141 (292)
T ss_pred CCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh-
Confidence 865422 223445667799999999999998888888888888887788999999999998554444444443332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.. ...+++++||+.+ .|++.|.+.+.+.+..
T Consensus 142 ---~~--~~~~i~~iSA~~~---------------------------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 ---LM--DFAEIVPISALKG---------------------------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ---hC--CCCeEEEecCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22 2468999999886 6899999999888764
No 33
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.68 E-value=2.8e-16 Score=161.50 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=127.3
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-Cce-------EEecCcHHHHHhCCCCeEEcCCCCC
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RAL-------FLIAERVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~-------~ivnd~~dla~~~~a~GvHL~~~~l 169 (921)
.++..+.+++++++|++++|+|.++.+..+ .+..+|+. +.. ++.+++++.|.+.||+++|.++.+.
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~------~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~ 94 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPLNSPDPFD------SIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDP 94 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHH------HHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCH
Confidence 347889999999999999999998876554 45555554 433 8899999999999999999999998
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~ 246 (921)
+...++...| . .++.+||+++|+.+| .+.|+||+.+=|. ...|+. ...++... ++|++|+|||++
T Consensus 95 ~v~~~~~~~~------~---~~~~G~~t~~E~~~A-~~~Gad~vk~Fpa--~~~G~~~l~~l~~~~~~~ipvvaiGGI~~ 162 (206)
T PRK09140 95 EVIRRAVALG------M---VVMPGVATPTEAFAA-LRAGAQALKLFPA--SQLGPAGIKALRAVLPPDVPVFAVGGVTP 162 (206)
T ss_pred HHHHHHHHCC------C---cEEcccCCHHHHHHH-HHcCCCEEEECCC--CCCCHHHHHHHHhhcCCCCeEEEECCCCH
Confidence 8877777543 2 466679999999999 8999999998563 235655 57788777 499999999999
Q ss_pred cChHHHHHcCCcEEEEeecccc
Q 002437 247 VDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+|+.+++++|+++||++++.++
T Consensus 163 ~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHCCCeEEEEehHhcc
Confidence 9999999999999999988865
No 34
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=1.8e-15 Score=156.14 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=114.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+++|+++|.+|+|||||+|+|+|......+..++. .. ...... . .+..+...++.+||||
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~---~~t~~~------------~----~~~~~~~~~l~l~Dtp 60 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VV---ETTMKR------------T----PYPHPKFPNVTLWDLP 60 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-cc---ccccCc------------e----eeecCCCCCceEEeCC
Confidence 46899999999999999999999654322222111 00 000000 0 0000112369999999
Q ss_pred CCChhhhHHHHHHHH-hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH--------HHHHHH
Q 002437 444 GTNVILQRQQRLTEE-FVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF--------ELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~-~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~--------~~~~v~ 514 (921)
|++............ .+..+|++++|.+ .+++..+..+++.++..++|+++|+||+|+..+.+ ..++++
T Consensus 61 G~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l 138 (197)
T cd04104 61 GIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVL 138 (197)
T ss_pred CCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHH
Confidence 997543222222222 2578999999854 45789999999999999999999999999965322 134556
Q ss_pred HHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+++.+...++ ...++||.+|+... ...+|+.|++.+...|.+
T Consensus 139 ~~i~~~~~~~~~~~~~~~p~v~~vS~~~~-------------------------~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 139 QEIRDNCLENLQEAGVSEPPVFLVSNFDP-------------------------SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEeCCCh-------------------------hhcChHHHHHHHHHHhhH
Confidence 666666665553 45689999999742 025899999999888874
No 35
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.67 E-value=1.6e-15 Score=154.23 Aligned_cols=149 Identities=25% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRY-LKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+++|.+|+|||||+|+|++... ... ...++|..+..+.+. .++.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~l 68 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---------------------------DGFRL 68 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---------------------------CcEEE
Confidence 4678999999999999999999999863 222 222344443333221 14899
Q ss_pred EeCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||++.. ...+......++. .+|++++|+|++++.+..+..++..+...+.|+++|+||+|+.. +++.
T Consensus 69 iDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~ 147 (179)
T TIGR03598 69 VDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK-KSEL 147 (179)
T ss_pred EeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC-HHHH
Confidence 999998532 1233344445554 46899999999999999988888888888899999999999974 3455
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+.+++.+... + ...++|++||+++
T Consensus 148 ~~~~~~i~~~l~~~-~-~~~~v~~~Sa~~g 175 (179)
T TIGR03598 148 NKQLKKIKKALKKD-A-DDPSVQLFSSLKK 175 (179)
T ss_pred HHHHHHHHHHHhhc-c-CCCceEEEECCCC
Confidence 55666666665543 1 2358999999987
No 36
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=99.67 E-value=2.5e-16 Score=168.86 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=124.1
Q ss_pred hHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcc
Q 002437 101 ALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMK 179 (921)
Q Consensus 101 ~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~ 179 (921)
-++.+++|+++|++.||+|.|+++.++.++.++++.++|+. |+.+ +++|.|+|+.+.+
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v------------eaE~ghlG~~d~~--------- 144 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV------------EAEIGRVGGSEDG--------- 144 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE------------EEEeeeECCccCC---------
Confidence 35899999999999999999999999999999999999999 8873 7889999977743
Q ss_pred cCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe--CCC--CCC---CCCcc-hhhhhhcCCCCEEEEc--CCCccCh
Q 002437 180 DSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFG--EGQ---KADVI-ENSLFTNVKIPIFIMN--ASPLVDV 249 (921)
Q Consensus 180 ~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~--gpv--Tk~---~~g~~-~~~~~~~~~~Pv~aiG--Gi~~~~~ 249 (921)
++ ++|.|||+++++.++....|+||+.+ ||+ |++ ..|++ ++++++.+++|++++| ||+++|+
T Consensus 145 ---~~-----~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~ 216 (281)
T PRK06806 145 ---SE-----DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDF 216 (281)
T ss_pred ---cc-----cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 12 46889999999999822469999999 998 553 23444 5889999999999999 9999999
Q ss_pred HHHHHcCCcEEEEeecccccchHHHHH
Q 002437 250 SKFLKSGASGFVISLEDLSLFNDGVLS 276 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~~~~~~~~ 276 (921)
.++.++|+.+|+++++....+.....+
T Consensus 217 ~~~i~~G~~kinv~T~i~~a~~~a~~~ 243 (281)
T PRK06806 217 KKCIQHGIRKINVATATFNSVITAVNN 243 (281)
T ss_pred HHHHHcCCcEEEEhHHHHHHHHHHHHH
Confidence 999999999999988887765544443
No 37
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6.9e-16 Score=162.26 Aligned_cols=232 Identities=19% Similarity=0.209 Sum_probs=153.7
Q ss_pred cChHHHHHcCCcEEEEeecccccchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHH
Q 002437 247 VDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQL 326 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (921)
+++..+.. .+-.+ ..+..|..++.+-+++. ++...+++.++..+..... ...++...+....+..+.
T Consensus 60 d~l~~iv~-~~P~i----d~LhpFY~eLidvl~d~----d~~k~sLs~v~~A~~~i~~----l~~eYi~~lk~a~~~~~~ 126 (346)
T COG1084 60 DRLDKIVE-RFPSL----DDLHPFYRELIDVLVDI----DHLKISLSAVSWASKIIEK----LAREYIRLLKAAKDPKEA 126 (346)
T ss_pred HHHHHHHH-hCCCc----cccChHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCChhHH
Confidence 44444443 45555 67778888888877654 2222333333333322111 113344444555555666
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCC----CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE
Q 002437 327 IETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQID----EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT 402 (921)
Q Consensus 327 ~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~----~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~ 402 (921)
.+..|..+.+..+.+++..+.++.++.....+++++ +.++|+|.|.||+|||||++++++.+.-...+.+||..+.
T Consensus 127 ~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~ 206 (346)
T COG1084 127 NQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH 206 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee
Confidence 777778888888888877777777766666666553 6799999999999999999999999988889999999888
Q ss_pred EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCCh-hhhHHHHH----HHHhcCCCCEEEEEEeCCC--C
Q 002437 403 FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNV-ILQRQQRL----TEEFVPRADLVLFVISADR--P 475 (921)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~-~~~~~~~~----~~~~l~~aD~il~V~da~~--~ 475 (921)
+.++.... ..+.+|||||+-+ ..++...+ +...-.-.++|+|++|.+. +
T Consensus 207 vGhfe~~~------------------------~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cg 262 (346)
T COG1084 207 VGHFERGY------------------------LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCG 262 (346)
T ss_pred EeeeecCC------------------------ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccC
Confidence 77654322 1489999999842 22222222 2222245899999999874 3
Q ss_pred CC-HHHHHHHHHhhh-cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 476 LT-ESEVVFLRYTQQ-WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 476 ~t-~~e~~~l~~l~~-~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
.+ +.+..+++.++. .+.|+++|+||+|.... +.++++...
T Consensus 263 y~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~-e~~~~~~~~ 304 (346)
T COG1084 263 YSLEEQISLLEEIKELFKAPIVVVINKIDIADE-EKLEEIEAS 304 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEecccccch-hHHHHHHHH
Confidence 33 445678888876 44699999999999843 444544443
No 38
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.67 E-value=1.6e-15 Score=155.36 Aligned_cols=183 Identities=26% Similarity=0.306 Sum_probs=120.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|+.++|||||+++|++................ .......+..+......+..... .....+.++++||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDt 77 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNA---FLDKHPEERERGITIDLSFISFE-KNENNRKITLIDT 77 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHC---HHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccc---cccccchhhhccccccccccccc-ccccccceeeccc
Confidence 3578999999999999999999965422111000000000 00000001111111111111111 0011135999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.. .+...+...+..+|++|+|+|+..+......+.+..+...+.|+++|+||+|+. ..++++..+.+...+.
T Consensus 78 PG~~----~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~--~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 78 PGHE----DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI--EKELEEIIEEIKEKLL 151 (188)
T ss_dssp SSSH----HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS--HHHHHHHHHHHHHHHH
T ss_pred cccc----ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch--hhhHHHHHHHHHHHhc
Confidence 9973 344456667899999999999999999999999999999999999999999998 5667777777776554
Q ss_pred HhhCCC---CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 523 KLLNIE---NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 523 ~~~~~~---~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.++.. ..+|+++||..+ .|++.|.+.+.+.+.
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g---------------------------~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTG---------------------------DGIDELLEALVELLP 187 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTT---------------------------BTHHHHHHHHHHHS-
T ss_pred cccccCccccceEEEEecCCC---------------------------CCHHHHHHHHHHhCc
Confidence 433332 479999999987 689999998887653
No 39
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.67 E-value=1.7e-15 Score=150.73 Aligned_cols=160 Identities=31% Similarity=0.434 Sum_probs=111.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|.++.+....+.+. ......+.. .+ ..+.++||
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~liDt 58 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-------------DD-----------AQIIFVDT 58 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-------------CC-----------eEEEEEEC
Confidence 578999999999999999999998765444333221 111110000 00 24889999
Q ss_pred CCCChhhhH----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQR----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+...... ........+..+|+++||+|+.++.+.....++..+...+.|+++|+||+|+....+...+....+.
T Consensus 59 pG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 59 PGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 998644222 2234556679999999999999887777777778888778999999999999855444444444333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. .. ...+++++|++.+ .|++++.+.|.++
T Consensus 139 ~----~~--~~~~~~~~s~~~~---------------------------~~~~~l~~~l~~~ 167 (168)
T cd04163 139 E----LG--PFAEIFPISALKG---------------------------ENVDELLEEIVKY 167 (168)
T ss_pred h----cc--CCCceEEEEeccC---------------------------CChHHHHHHHHhh
Confidence 2 11 2468999999876 6888888888765
No 40
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=3.3e-15 Score=148.89 Aligned_cols=147 Identities=27% Similarity=0.328 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||+|+|++... .+....+ +|.......+. ++. ...+.+||
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~--~~~~~~~D 57 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD---------------------LPS--GKRLGFID 57 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE---------------------ecC--CcEEEEEE
Confidence 4799999999999999999998532 1111111 22222111110 000 02589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. ++...+..++..+|++++|+|+++.......+.+..+...+ +|+++|+||+|+... .......+.+.+.
T Consensus 58 tpG~~----~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~ 132 (164)
T cd04171 58 VPGHE----KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-DWLELVEEEIREL 132 (164)
T ss_pred CCChH----HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-HHHHHHHHHHHHH
Confidence 99973 33345566788999999999998754444444444444334 499999999999743 2223333333333
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... +....+++++||+.+
T Consensus 133 ~~~~-~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 133 LAGT-FLADAPIFPVSAVTG 151 (164)
T ss_pred HHhc-CcCCCcEEEEeCCCC
Confidence 3321 113578999999887
No 41
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.66 E-value=2.9e-15 Score=150.07 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=107.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|+|++.++.......+|............ .. ...+.+|||||
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~----------~~-----------~~~~~iiDtpG 59 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV----------LK-----------IPGITFIDTPG 59 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc----------CC-----------cceEEEEeCCC
Confidence 4699999999999999999998876543222233322211111100 00 12589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
.. .....+..++..+|++++|+|++++........+..+...+.|+++|+||+|+.... .+.+...+.......
T Consensus 60 ~~----~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~ 133 (168)
T cd01887 60 HE----AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN--PERVKNELSELGLQG 133 (168)
T ss_pred cH----HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc--HHHHHHHHHHhhccc
Confidence 73 344456667789999999999998776666667777777889999999999987432 122222222211110
Q ss_pred h--CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 525 L--NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 525 ~--~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. .....+++++|++.+ .|+.++.+++.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 165 (168)
T cd01887 134 EDEWGGDVQIVPTSAKTG---------------------------EGIDDLLEAILLLA 165 (168)
T ss_pred cccccCcCcEEEeecccC---------------------------CCHHHHHHHHHHhh
Confidence 0 113468999999887 68888888887654
No 42
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=2.5e-15 Score=150.88 Aligned_cols=150 Identities=29% Similarity=0.354 Sum_probs=101.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+++|+++|.+|+|||||+|+|++......+..+. |.......+.. ++ .++.+|||
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~iiDt 57 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-------------DG-----------KKYTLIDT 57 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-------------CC-----------eeEEEEEC
Confidence 5789999999999999999999987554443332 22211111100 11 24789999
Q ss_pred CCCChhh------hHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 443 PGTNVIL------QRQQ-RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 443 PG~~~~~------~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
||++... +... ......+..+|++++|+|++++.+.....++..+...+.|+++|+||+|+.... ...+.+.
T Consensus 58 pG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 137 (174)
T cd01895 58 AGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFK 137 (174)
T ss_pred CCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHH
Confidence 9985431 1111 123345689999999999999988887777777777789999999999997542 2344444
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+.+.. ....+++++||+.+
T Consensus 138 ~~~~~~~~~---~~~~~~~~~Sa~~~ 160 (174)
T cd01895 138 KEIRRKLPF---LDYAPIVFISALTG 160 (174)
T ss_pred HHHHhhccc---ccCCceEEEeccCC
Confidence 444443321 12468999999986
No 43
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=2.2e-15 Score=153.96 Aligned_cols=177 Identities=22% Similarity=0.192 Sum_probs=114.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|+|++...........+. ....... .................+. ...+.+|||||.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE--TFLDVLK---EERERGITIKSGVATFEWP---DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec--ccccCCH---HHHHcCCCeecceEEEeeC---CEEEEEEeCCCc
Confidence 4899999999999999999988654322111110 0000000 0000000000011111110 135899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
. .+...+..++..+|++++|+|+..+......+++..+...+.|+++|+||+|+... ++.....+.+.+.+....
T Consensus 73 ~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 73 E----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE-EDLEEVLREIKELLGLIG 147 (189)
T ss_pred H----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch-hcHHHHHHHHHHHHcccc
Confidence 4 33445677778999999999999888777777887777788999999999999853 444555555555544321
Q ss_pred ----------CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 ----------NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ----------~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+++++||+.+ .|++++.+.+..++.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g---------------------------~gi~~l~~~l~~~l~ 187 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTG---------------------------IGVEELLEAIVEHLP 187 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccC---------------------------cCHHHHHHHHHhhCC
Confidence 124688999999887 588888888887764
No 44
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=3.3e-15 Score=166.46 Aligned_cols=163 Identities=25% Similarity=0.292 Sum_probs=113.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|.+|+|||||+|+|+|.++...+..+ ||.......+.. ++ ..+.|||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-------------~~-----------~qi~~~D 106 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-------------KD-----------TQVILYD 106 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-------------CC-----------eEEEEEE
Confidence 3468999999999999999999999875433333 343222111110 11 2489999
Q ss_pred CCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+... .......+...+..+|++|||+|+..++...+..++..++..+.|+++|+||+|+... ...++.+.+
T Consensus 107 TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--~~~~~~~~l 184 (339)
T PRK15494 107 TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--YLNDIKAFL 184 (339)
T ss_pred CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--cHHHHHHHH
Confidence 9998532 2223344455678999999999998888777777888887777888999999998642 223333322
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
. .. .....+|++||+++ .|+++|.+++.+.+.+.
T Consensus 185 ~----~~--~~~~~i~~iSAktg---------------------------~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 185 T----EN--HPDSLLFPISALSG---------------------------KNIDGLLEYITSKAKIS 218 (339)
T ss_pred H----hc--CCCcEEEEEeccCc---------------------------cCHHHHHHHHHHhCCCC
Confidence 2 21 12367999999987 68999999998887753
No 45
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.1e-15 Score=173.38 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=113.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|+||+|||||+|+|+|.+....++..+|.+.....+...+ +++.++|+|
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~------------------------~~i~ivDLP 58 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG------------------------HEIEIVDLP 58 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC------------------------ceEEEEeCC
Confidence 35699999999999999999999998888999999876665544332 248999999
Q ss_pred CCChhh--hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVIL--QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~--~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+++.. ..++.++++|+ .++|+||.|+|+++. +.+..+.-++.+.+.|+++++|++|.... .-.+.-.+
T Consensus 59 G~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~-----~Gi~ID~~ 131 (653)
T COG0370 59 GTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKK-----RGIRIDIE 131 (653)
T ss_pred CcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHh-----cCCcccHH
Confidence 998763 56788999998 578999999999964 67788888999999999999999997533 11122233
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.++ +||+++||+++
T Consensus 132 ~L~~~LG---vPVv~tvA~~g 149 (653)
T COG0370 132 KLSKLLG---VPVVPTVAKRG 149 (653)
T ss_pred HHHHHhC---CCEEEEEeecC
Confidence 4444444 89999999987
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.65 E-value=9.7e-15 Score=167.52 Aligned_cols=182 Identities=27% Similarity=0.367 Sum_probs=113.3
Q ss_pred hhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 311 ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 311 ~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
+.++..+||.++... .+.....+......+++.... . ....+...++|+++|.+|+|||||+|+|++.+..
T Consensus 159 a~iea~iDf~ee~~~-~~~~~~~l~~~~~~l~~ll~~-------~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~a 229 (442)
T TIGR00450 159 AQVEVNIDYEEDDDE-QDSLNQLLLSIIAELKDILNS-------Y-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRA 229 (442)
T ss_pred HHeeEECCcCCCCcc-HHHHHHHHHHHHHHHHHHHHH-------H-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 456778888764211 122222333333333332111 1 1134557789999999999999999999998653
Q ss_pred -CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhHH----HHHHHHhcCCCCE
Q 002437 391 -KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQ----QRLTEEFVPRADL 465 (921)
Q Consensus 391 -~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~----~~~~~~~l~~aD~ 465 (921)
.....+||..+....... +| ..+.+|||||+....... ...+..++..+|+
T Consensus 230 ivs~~pgtTrd~~~~~i~~-------------~g-----------~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~ 285 (442)
T TIGR00450 230 IVSDIKGTTRDVVEGDFEL-------------NG-----------ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADL 285 (442)
T ss_pred ccCCCCCcEEEEEEEEEEE-------------CC-----------EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCE
Confidence 344445555433222111 11 147899999985332211 1335678899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 466 VLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 466 il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
+|||+|++++.+..+. ++..+...+.|+++|+||+|+... +.+. + ... ...+++.+||++
T Consensus 286 il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~----~----~~~---~~~~~~~vSak~ 345 (442)
T TIGR00450 286 VIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN--SLEF----F----VSS---KVLNSSNLSAKQ 345 (442)
T ss_pred EEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc--chhh----h----hhh---cCCceEEEEEec
Confidence 9999999988877665 667776678899999999998643 1111 1 111 135688999976
No 47
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.64 E-value=3.1e-15 Score=150.00 Aligned_cols=157 Identities=24% Similarity=0.250 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++.+........+|..+....+... + ..+.+|||||
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~i~Dt~G 56 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK-------------Y-----------LRWQVIDTPG 56 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC-------------c-----------eEEEEEECCC
Confidence 579999999999999999999987643333334443332221110 0 2589999999
Q ss_pred CChhh--hH--H-HHHHHHhcCCCCEEEEEEeCCCCCC---HHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHH
Q 002437 445 TNVIL--QR--Q-QRLTEEFVPRADLVLFVISADRPLT---ESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 445 ~~~~~--~~--~-~~~~~~~l~~aD~il~V~da~~~~t---~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+.... .+ . ..........+|++|+|+|+++..+ ....+++..++.. +.|+++|+||+|+... ....+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-~~~~~-- 133 (168)
T cd01897 57 LLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF-EDLSE-- 133 (168)
T ss_pred cCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch-hhHHH--
Confidence 84211 11 0 1111111234699999999986543 3334566666654 7899999999999754 22222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. .+......+++++||+++ .|++++.+++.+.|
T Consensus 134 --~~----~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 167 (168)
T cd01897 134 --IE----EEEELEGEEVLKISTLTE---------------------------EGVDEVKNKACELL 167 (168)
T ss_pred --HH----HhhhhccCceEEEEeccc---------------------------CCHHHHHHHHHHHh
Confidence 11 111223568999999987 78999988887654
No 48
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=6.7e-15 Score=150.98 Aligned_cols=167 Identities=22% Similarity=0.126 Sum_probs=104.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|+.++|||||+++|++.... .+.... ..... .+....+..+..........+.+ --..++++|||
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~-~g~~~~-~~~~~---~d~~~~E~~rg~Ti~~~~~~~~~---~~~~i~~iDtP 73 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAK-KGGAKF-KKYDE---IDKAPEEKARGITINTAHVEYET---ANRHYAHVDCP 73 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh-cccccc-ccccc---ccCChhhhhcCccEEeeeeEecC---CCeEEEEEECc
Confidence 468999999999999999999864210 000000 00000 00001111111111111110000 01358999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
|.. .+...+...+..+|++++|+|+..+.......++..+...+.| +|+|+||+|+...++..+.+.+.+...+.
T Consensus 74 G~~----~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 74 GHA----DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred CHH----HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 974 3344456677899999999999988888888888888888876 78999999997543334445556666655
Q ss_pred Hhh-CCCCCeEEEecccchHH
Q 002437 523 KLL-NIENVTIYPVSARSTLE 542 (921)
Q Consensus 523 ~~~-~~~~~~v~~vSA~~~l~ 542 (921)
.+- ....++++|+||+.|.+
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred HhcccccCCeEEEeeCccccC
Confidence 531 22468999999999853
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=4e-15 Score=172.67 Aligned_cols=166 Identities=27% Similarity=0.345 Sum_probs=118.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+..... ..+||.......+.. ++ ..+.+||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~liD 226 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-------------NG-----------KKYLLID 226 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-------------CC-----------cEEEEEE
Confidence 4689999999999999999999998754433 344554332222211 11 2489999
Q ss_pred CCCCChhh------hHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVIL------QRQ-QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~------~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+.... +.+ ...+..++..+|++|+|+|+.++.+..+..++..+...+.|+++|+||||+..+.+..+++.
T Consensus 227 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~ 306 (429)
T TIGR03594 227 TAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFK 306 (429)
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHH
Confidence 99984321 111 12245678999999999999999999999999888888999999999999984434455555
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+.. ....+++++||+++ .|+.++.+.+.+...
T Consensus 307 ~~~~~~~~~---~~~~~vi~~SA~~g---------------------------~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 307 KELRRKLPF---LDFAPIVFISALTG---------------------------QGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHhccc---CCCCceEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 555443322 24578999999987 678888777776543
No 50
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.64 E-value=2.2e-15 Score=148.83 Aligned_cols=151 Identities=26% Similarity=0.332 Sum_probs=103.9
Q ss_pred EEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 368 VIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 368 ~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
+++|.+|+|||||+|.|++.+.... ...++|.......... ++ ..+.+|||||++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~i~DtpG~~ 56 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-------------GG-----------REFILIDTGGIE 56 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-------------CC-----------eEEEEEECCCCC
Confidence 4799999999999999999864332 2333443222211110 11 248999999997
Q ss_pred hhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 447 VILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 447 ~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
.... .....+...+..+|+++||+|+.++.+..+..++..++..+.|+++|+||+|+...... ...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--------~~~~~ 128 (157)
T cd01894 57 PDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--------AAEFY 128 (157)
T ss_pred CchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--------HHHHH
Confidence 5432 23334556778999999999999888777777778888888999999999999865221 11122
Q ss_pred HhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 523 KLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. ++ ..+++++|++.+ .|++++.+.+.+.
T Consensus 129 ~-~~--~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~ 156 (157)
T cd01894 129 S-LG--FGEPIPISAEHG---------------------------RGIGDLLDAILEL 156 (157)
T ss_pred h-cC--CCCeEEEecccC---------------------------CCHHHHHHHHHhh
Confidence 2 12 236899999987 6888888877654
No 51
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.64 E-value=1.2e-15 Score=158.11 Aligned_cols=160 Identities=13% Similarity=0.019 Sum_probs=125.2
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHH-HHHHHHHHHHhhc---CceEEecCcH----HHHHhCCCCeEEcCCCCCCHH--
Q 002437 103 DLIDEAVAKFVGIVVLNGGEASGKSV-YEAACLLKSVVKD---RALFLIAERV----DIAAAVNASGVLLSDQGLPAI-- 172 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~----dla~~~~a~GvHL~~~~l~~~-- 172 (921)
+.++.+.+.|+++||+|.+..+.+.+ .+.|+.+.++|+. ++.|++|+++ ++|..+++|||||++.+ +..
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e-~~~~~ 88 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE-SPEYC 88 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC-CHHHH
Confidence 66888999999999999999999999 9999999999975 6899999999 69999999999999886 333
Q ss_pred -HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC---Ccc--hhhhhhc-CCCCEEEEcCCC
Q 002437 173 -VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA---DVI--ENSLFTN-VKIPIFIMNASP 245 (921)
Q Consensus 173 -~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~---g~~--~~~~~~~-~~~Pv~aiGGi~ 245 (921)
..|..+| .. ++..+++|+|+..++..+ ...++||+++-..||... |.. ...+.+. .++||+++|||+
T Consensus 89 ~~l~~~~~---~~--~i~~i~~~~~~~~~~~~~-~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~~~~PvilaGGI~ 162 (203)
T cd00405 89 AQLRARLG---LP--VIKAIRVKDEEDLEKAAA-YAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLASRKPVILAGGLT 162 (203)
T ss_pred HHHHhhcC---Cc--EEEEEecCChhhHHHhhh-ccccCCEEEEcCCCCCCCCCCcceEChHHhhccccCCCEEEECCCC
Confidence 3344343 23 212388899887777677 678999999854455432 222 1222222 589999999999
Q ss_pred ccChHHHHHcC-CcEEEEeeccccc
Q 002437 246 LVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 246 ~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++|+.++.++| ++||+++++....
T Consensus 163 ~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 163 PDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred hHHHHHHHHhcCCCEEEcCCcccCC
Confidence 99999999999 9999998887654
No 52
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=2.4e-15 Score=151.12 Aligned_cols=158 Identities=23% Similarity=0.216 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
.|+++|.+|+|||||+|+|.+.+..+....++|..+....... ++. ..+.++||||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-------------~~~----------~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-------------DDG----------RSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-------------CCC----------CeEEEEecCcc
Confidence 4899999999999999999987654333334443332221110 000 14899999998
Q ss_pred ChhhhH---HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 446 NVILQR---QQRLTEEFVPRADLVLFVISADRP-LTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 446 ~~~~~~---~~~~~~~~l~~aD~il~V~da~~~-~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
...... ....+...+..+|++++|+|++++ .+.... .+++.+.. .+.|+++|+||+|+..... ..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~--- 134 (170)
T cd01898 59 IEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFE--- 134 (170)
T ss_pred cCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHH---
Confidence 532221 112233345679999999999977 344433 33444432 3589999999999875422 222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
......... ...+++++||+.+ .|+.++.+.+.+.
T Consensus 135 ~~~~~~~~~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~i~~~ 169 (170)
T cd01898 135 LLKELLKEL---WGKPVFPISALTG---------------------------EGLDELLRKLAEL 169 (170)
T ss_pred HHHHHHhhC---CCCCEEEEecCCC---------------------------CCHHHHHHHHHhh
Confidence 122111111 2467999999987 6888887777653
No 53
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.63 E-value=6.3e-14 Score=154.16 Aligned_cols=169 Identities=30% Similarity=0.363 Sum_probs=105.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC-----CCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG-----KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg-----~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+..|+|+|.+|+|||||||+|.| ....++|...||..++.|.+... .++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-------------------------pnv 88 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-------------------------PNV 88 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--------------------------TTE
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-------------------------CCC
Confidence 568999999999999999999987 34567777788888887765432 369
Q ss_pred EEEeCCCCChhhhHHHHHHHH-hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC-CCC-------hH
Q 002437 438 IIVDTPGTNVILQRQQRLTEE-FVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL-YQN-------AF 508 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~-~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~-~~~-------~~ 508 (921)
++||.||++...-.......+ -+...|.+|+|.+.. ++..+..+.+.++.+++|+++|-||+|. +.+ .-
T Consensus 89 ~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f 166 (376)
T PF05049_consen 89 TLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTF 166 (376)
T ss_dssp EEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT-
T ss_pred eEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCccc
Confidence 999999997553222222222 257889888877644 8899999999999999999999999995 101 01
Q ss_pred HHHHHHHHHHHHHHHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 509 ELEEAISFVKENTMKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+++.+.+++++.+.+ +...++||.||+..- ..-.|+.|++.+..-|..
T Consensus 167 ~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl-------------------------~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 167 NEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL-------------------------SKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp -HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT-------------------------TSTTHHHHHHHHHHHS-G
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc-------------------------ccCChHHHHHHHHHHhHH
Confidence 12334444444444433 446789999999753 124799999999887774
No 54
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1e-14 Score=169.46 Aligned_cols=165 Identities=29% Similarity=0.347 Sum_probs=118.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.+....+.. ++|.......+.. ++ ..+.+||
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~lvD 227 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-------------DG-----------QKYTLID 227 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-------------CC-----------eeEEEEE
Confidence 568999999999999999999999875544443 3444332222211 11 2489999
Q ss_pred CCCCChhh------hHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVIL------QRQ-QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~------~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+.... +.+ ...+..++..+|++|+|+|+..+.+.++..++..+...++|+++|+||||+.. .+..+++.
T Consensus 228 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-~~~~~~~~ 306 (435)
T PRK00093 228 TAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-EKTMEEFK 306 (435)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-HHHHHHHH
Confidence 99974221 111 12244678899999999999999999999998888888999999999999983 33445555
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+.. ....+++++||+.+ .|+.++.+.+.+...
T Consensus 307 ~~~~~~l~~---~~~~~i~~~SA~~~---------------------------~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 307 KELRRRLPF---LDYAPIVFISALTG---------------------------QGVDKLLEAIDEAYE 344 (435)
T ss_pred HHHHHhccc---ccCCCEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 555443332 24579999999987 678888877776544
No 55
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=2.4e-14 Score=147.55 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=111.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRY-LKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..++|+++|.+|+|||||+|+|++.+. ..... .++|..+..+... .++.|
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~l~l 74 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---------------------------DKLRL 74 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---------------------------CeEEE
Confidence 3568999999999999999999999763 22222 2233333222110 25899
Q ss_pred EeCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||+... ...+..+...++. .++++++|+|++.+.+..+.+++..+...+.|+++|+||+|+... .+.
T Consensus 75 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~-~~~ 153 (196)
T PRK00454 75 VDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK-GER 153 (196)
T ss_pred eCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH-HHH
Confidence 999997421 2233445555554 447899999998888887777777777778999999999999754 333
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....+...+.. ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~~~~~i~~~l~~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 154 KKQLKKVRKALKF----GDDEVILFSSLKK---------------------------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHh----cCCceEEEEcCCC---------------------------CCHHHHHHHHHHHhc
Confidence 4444434433322 2478999999987 688899888887765
No 56
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.61 E-value=1.3e-14 Score=149.11 Aligned_cols=176 Identities=26% Similarity=0.241 Sum_probs=106.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC------CCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR------YLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~------~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+|+++|++|+|||||+|+|++.. ..+. ....+|.......+..... ........+..-...+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKP----------KHLRELINPGEENLQI 70 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccc----------ccccccccccccCceE
Confidence 369999999999999999999741 1111 0111232222211110000 0000000000001258
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.+|||||.... ..........+|++++|+|+..+.+....+.+......+.|+++|+||+|+... ++.+...+.+
T Consensus 71 ~i~DtpG~~~~----~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~-~~~~~~~~~~ 145 (192)
T cd01889 71 TLVDCPGHASL----IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE-EERERKIEKM 145 (192)
T ss_pred EEEECCCcHHH----HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH-HHHHHHHHHH
Confidence 99999997432 222334457789999999999877666555555444567899999999999743 3334444444
Q ss_pred HHHHHHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+...+ +....+++++||+++ .|+++|.+.+.+.+.
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g---------------------------~gi~~L~~~l~~~~~ 186 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPG---------------------------GGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCC---------------------------CCHHHHHHHHHhccc
Confidence 44443332 234578999999987 789999988887654
No 57
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=2.2e-14 Score=167.39 Aligned_cols=165 Identities=25% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||.......+.. +| ..+.|||
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-------------~~-----------~~~~l~D 265 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-------------GG-----------KTWRFVD 265 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-------------CC-----------EEEEEEE
Confidence 46899999999999999999999987543 33444554332211110 11 2478999
Q ss_pred CCCCChh------hhHHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVI------LQRQQRL-TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~------~~~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+... .+.+... +..++..+|++|+|+|++++.+..+..++..+...+.|+|+|+||||+... +......
T Consensus 266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-~~~~~~~ 344 (472)
T PRK03003 266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-DRRYYLE 344 (472)
T ss_pred CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-hHHHHHH
Confidence 9997311 1122222 345678999999999999999999999888888889999999999999753 2222222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...+. .....+++++||+++ .|++++...+.+.+.
T Consensus 345 ~~i~~~l~---~~~~~~~~~~SAk~g---------------------------~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 345 REIDRELA---QVPWAPRVNISAKTG---------------------------RAVDKLVPALETALE 382 (472)
T ss_pred HHHHHhcc---cCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22332222 123478999999997 688888888877654
No 58
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.61 E-value=1.1e-14 Score=143.74 Aligned_cols=150 Identities=32% Similarity=0.406 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+..+ +|..+....+.. .+ ..+.++|||
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~i~Dtp 57 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-------------GG-----------IPVRLIDTA 57 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-------------CC-----------EEEEEEECC
Confidence 57999999999999999999998754433333 333322222111 11 248999999
Q ss_pred CCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+..... .........+..+|++++|+|++++.+..+..++.. ..+.|+++|+||+|+......
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------- 125 (157)
T cd04164 58 GIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------- 125 (157)
T ss_pred CcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc----------
Confidence 9864422 112234566789999999999999888888776665 457899999999999854211
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.......+++++||+++ .|++++.+.|.+.+
T Consensus 126 ----~~~~~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 ----LSLLAGKPIIAISAKTG---------------------------EGLDELKEALLELA 156 (157)
T ss_pred ----ccccCCCceEEEECCCC---------------------------CCHHHHHHHHHHhh
Confidence 11223578999999886 68888888877653
No 59
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1.4e-13 Score=141.79 Aligned_cols=169 Identities=28% Similarity=0.376 Sum_probs=119.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.+..|.++|.||+|||||||||++.+..+....+.+.+++....... ++ +.++||||
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~------------~~-----------~~l~lwDt 94 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY------------DG-----------ENLVLWDT 94 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc------------cc-----------cceEEecC
Confidence 56778899999999999999999877776665554443332211111 11 36999999
Q ss_pred CCCChh---hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCC-----------
Q 002437 443 PGTNVI---LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQN----------- 506 (921)
Q Consensus 443 PG~~~~---~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~----------- 506 (921)
||+++. +.++.+...+++++.|+++++++++++.-..+.+|+..+.. .++++++++|.+|...+
T Consensus 95 PG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p 174 (296)
T COG3596 95 PGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQP 174 (296)
T ss_pred CCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCC
Confidence 999764 44578889999999999999999999887888888887754 45899999999997654
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 507 AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+++..+.-.+.+.+++. +--||+++|.+.+ -|+..|-..+..++.
T Consensus 175 ~~a~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~---------------------------wgl~~l~~ali~~lp 222 (296)
T COG3596 175 SPAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRLP---------------------------WGLKELVRALITALP 222 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHh-hcCCeEEeccccC---------------------------ccHHHHHHHHHHhCc
Confidence 11222222222222233322 2357888885544 388888888888877
No 60
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=4.9e-14 Score=171.10 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=99.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|++|+|||||+|+|+|.+....+...+|.+.....+... + ..+.++|||
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~-------------~-----------~~i~lvDtP 58 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT-------------D-----------HQVTLVDLP 58 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC-------------c-----------eEEEEEECC
Confidence 4689999999999999999999987655555556654443332211 1 248999999
Q ss_pred CCChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 444 GTNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 444 G~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|+++.. ...+.+...++ ..+|++++|+|+++. +.+..++.++.+.+.|+++|+||+|..... ......
T Consensus 59 G~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~-~i~id~- 134 (772)
T PRK09554 59 GTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQ-NIRIDI- 134 (772)
T ss_pred CccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhcc-CcHHHH-
Confidence 997643 12334455564 589999999999874 445667778888899999999999986331 111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+.+ +.+++++||+.+
T Consensus 135 ---~~L~~~L---G~pVvpiSA~~g 153 (772)
T PRK09554 135 ---DALSARL---GCPVIPLVSTRG 153 (772)
T ss_pred ---HHHHHHh---CCCEEEEEeecC
Confidence 2233333 368999999886
No 61
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.7e-13 Score=141.89 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=133.7
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchhhccc-cc---------CCCe---
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQQRCE-RH---------PDGQ--- 424 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~~~~~-~~---------~~g~--- 424 (921)
..+.++.|.++|..+.|||||||.|+..++. ..|+.|||..+..+.+++.......... .. .-|.
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4557899999999999999999999998764 4688899999999998876532110000 00 0000
Q ss_pred --E-EeecCCCcccccEEEeCCCCChhhhH-------HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcCCe
Q 002437 425 --Y-ICYLPSPILKEMIIVDTPGTNVILQR-------QQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWKKK 493 (921)
Q Consensus 425 --~-~~~~p~~~l~~l~lvDTPG~~~~~~~-------~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~~~ 493 (921)
+ -..+|++.|..++||||||+-+...+ +..++.+|+.++|.|++++|+..- .+.+-.+++..++.....
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk 213 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK 213 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce
Confidence 1 12478888999999999999655332 456788999999999999999764 455566789999999999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 494 VVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 494 vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+-+|+||+|.+.. +++..+...+...+...++..++.-+.+-+
T Consensus 214 iRVVLNKADqVdt-qqLmRVyGALmWslgkv~nTpev~rvYigS 256 (532)
T KOG1954|consen 214 IRVVLNKADQVDT-QQLMRVYGALMWSLGKVMNTPEVSRVYIGS 256 (532)
T ss_pred eEEEeccccccCH-HHHHHHHHHHHHhhhhhcCCCcceeEEeec
Confidence 9999999999965 667888888888888888766655444444
No 62
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.5e-14 Score=158.28 Aligned_cols=161 Identities=21% Similarity=0.178 Sum_probs=108.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
..|+++|.+|||||||+|+|++.+.....+..||..+........ ++ ..++++||||
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~------------~~-----------~~~~i~D~PG 215 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD------------DY-----------KSFVIADIPG 215 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC------------CC-----------cEEEEEeCCC
Confidence 569999999999999999999987655566667776655332110 11 2489999999
Q ss_pred CChhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVILQ---RQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
+..... .......+++.++|++|||+|+++..+.++.. +...+.. ..+|+++|+||+|+....+..++..
T Consensus 216 li~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~- 294 (335)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRA- 294 (335)
T ss_pred ccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHH-
Confidence 853211 12233455678899999999998765555544 4445543 3579999999999975422111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...... ...++|++||+++ .|++++.+.+.+.+.
T Consensus 295 --~~~~~~----~~~~i~~iSAktg---------------------------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 295 --ALELAA----LGGPVFLISAVTG---------------------------EGLDELLRALWELLE 328 (335)
T ss_pred --HHHHHh----cCCCEEEEEcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111111 2367999999887 689999988887765
No 63
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.9e-14 Score=162.31 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.-|+++|.||||||||+|+|++.+...+....||..+....+...+ + ..++|+||||
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~------------~-----------~~i~~vDtPG 216 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD------------E-----------RSFVVADIPG 216 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC------------C-----------cEEEEEeCCC
Confidence 3599999999999999999999887556667788766654332111 1 1489999999
Q ss_pred CChhhhH---HHHHHHHhcCCCCEEEEEEeCCC---CCC-HHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHH
Q 002437 445 TNVILQR---QQRLTEEFVPRADLVLFVISADR---PLT-ESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 445 ~~~~~~~---~~~~~~~~l~~aD~il~V~da~~---~~t-~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+...... ......+++.++|++++|+|++. ... .....+++.+.. ..+|+++|+||+|+... +++.+
T Consensus 217 i~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~el~~ 295 (390)
T PRK12298 217 LIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-EEAEE 295 (390)
T ss_pred ccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-HHHHH
Confidence 8532111 12233456899999999999872 222 222345555554 35899999999998743 33332
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+. ..+. ...+|+++||+++ .|+++|.+.|.+.+.+
T Consensus 296 ~l~~l~----~~~~-~~~~Vi~ISA~tg---------------------------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 296 RAKAIV----EALG-WEGPVYLISAASG---------------------------LGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHH----HHhC-CCCCEEEEECCCC---------------------------cCHHHHHHHHHHHhhh
Confidence 222222 1122 1236999999887 6899998888887764
No 64
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=9.7e-15 Score=137.19 Aligned_cols=110 Identities=37% Similarity=0.557 Sum_probs=80.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+|+|.+|+|||||+|+|++.+....+ ..++|..+....+.. ++ ..+.|+||||
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-------------~~-----------~~~~~vDtpG 56 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-------------NN-----------KKFILVDTPG 56 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-------------TT-----------EEEEEEESSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-------------ce-----------eeEEEEeCCC
Confidence 5899999999999999999997655444 345666553322111 11 2478999999
Q ss_pred CChhhhH-----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeC
Q 002437 445 TNVILQR-----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNK 500 (921)
Q Consensus 445 ~~~~~~~-----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK 500 (921)
+++.... ....+.+.+..+|+++||+|++++.+..+.++++.++ .++|+++|+||
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 57 INDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 9754222 2223445559999999999998866677788888886 88999999998
No 65
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.59 E-value=6.3e-15 Score=150.81 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
..+..+.++.++++|+++||+|.++.+..+ ..+.+++.+.. |+ .++.+++++.|..+||+|+|+++.+.+...
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~ 91 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVK 91 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHH
Confidence 347789999999999999999998766433 55555555531 33 445599999999999999999999988888
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSK 251 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~ 251 (921)
+++..+ .. . ++|++ |++|+.+| .+.||||+.+-|.+. .|.. .+.++... ++|++|+|||+++|+.+
T Consensus 92 ~~~~~~---~~-~---i~gv~--t~~e~~~A-~~~Gad~i~~~p~~~--~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~ 159 (190)
T cd00452 92 AANRAG---IP-L---LPGVA--TPTEIMQA-LELGADIVKLFPAEA--VGPAYIKALKGPFPQVRFMPTGGVSLDNAAE 159 (190)
T ss_pred HHHHcC---Cc-E---ECCcC--CHHHHHHH-HHCCCCEEEEcCCcc--cCHHHHHHHHhhCCCCeEEEeCCCCHHHHHH
Confidence 887765 33 2 56777 99999999 899999999977522 3655 56777666 59999999999999999
Q ss_pred HHHcCCcEEEEeeccc
Q 002437 252 FLKSGASGFVISLEDL 267 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~~ 267 (921)
+.++|+++|+++++..
T Consensus 160 ~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 160 WLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHCCCEEEEEchhcc
Confidence 9999999999888876
No 66
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.58 E-value=7.7e-15 Score=152.58 Aligned_cols=203 Identities=21% Similarity=0.190 Sum_probs=143.3
Q ss_pred ccccCCCchHHHHHHHHH-HHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC
Q 002437 314 AGFVKFEDREKQLIETER-SVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKD 392 (921)
Q Consensus 314 ~~~~~~~~~~~~~~e~~~-~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~ 392 (921)
.+.. ..|.++..++.+. +++......+++.+......+ ..+....-...++|+|+|.+|||||||||+|++..+.|.
T Consensus 129 ~g~~-v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~ 206 (410)
T KOG0410|consen 129 SGGQ-VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPN 206 (410)
T ss_pred CCCc-ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCcc
Confidence 3444 5566666676665 677777777777554444333 222223334568999999999999999999999999998
Q ss_pred CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhH----HHHHHHHhcCCCCEEEE
Q 002437 393 GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQR----QQRLTEEFVPRADLVLF 468 (921)
Q Consensus 393 ~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~----~~~~~~~~l~~aD~il~ 468 (921)
+..+.|-++|.-. ...+.|. .+.+.||-|+-+..+. ..+.+.+.+..+|++|.
T Consensus 207 drLFATLDpT~h~------------a~Lpsg~-----------~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllH 263 (410)
T KOG0410|consen 207 DRLFATLDPTLHS------------AHLPSGN-----------FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLH 263 (410)
T ss_pred chhheeccchhhh------------ccCCCCc-----------EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEE
Confidence 8888887665422 1233443 4899999999665443 35678888899999999
Q ss_pred EEeCCCCCCHHHHH-HHHHhhhcCC-------eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 469 VISADRPLTESEVV-FLRYTQQWKK-------KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 469 V~da~~~~t~~e~~-~l~~l~~~~~-------~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|+|.++|..+.+.+ .++.++..+. .++-|-||+|...... ..+....+++|+++|
T Consensus 264 vvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------------e~E~n~~v~isaltg 326 (410)
T KOG0410|consen 264 VVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------------EEEKNLDVGISALTG 326 (410)
T ss_pred EeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------------ccccCCccccccccC
Confidence 99999998776664 6666666554 3777899999765421 112233789999988
Q ss_pred HHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 541 LEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 541 l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
.|+++|.+.+...+....
T Consensus 327 ---------------------------dgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 327 ---------------------------DGLEELLKAEETKVASET 344 (410)
T ss_pred ---------------------------ccHHHHHHHHHHHhhhhh
Confidence 788888888877766433
No 67
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.57 E-value=5.3e-14 Score=138.44 Aligned_cols=145 Identities=33% Similarity=0.419 Sum_probs=98.9
Q ss_pred EEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCCh
Q 002437 369 IVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNV 447 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~ 447 (921)
++|.+|+|||||+|+|++.... .....++|.......+.... ...+.++||||+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~Dt~g~~~ 57 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-----------------------LGPVVLIDTPGIDE 57 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-----------------------CCcEEEEECCCCCc
Confidence 5899999999999999998766 33344444433332221110 12589999999865
Q ss_pred hhhHHH---HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 448 ILQRQQ---RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 448 ~~~~~~---~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
...... ..+..++..+|++++|+|+..+.......++......+.|+++|+||+|+.... ....... ......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~---~~~~~~ 133 (163)
T cd00880 58 AGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE-EEEELLE---LRLLIL 133 (163)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh-hHHHHHH---HHHhhc
Confidence 433222 466778899999999999999887777665666667889999999999998652 2222211 111111
Q ss_pred hCCCCCeEEEecccch
Q 002437 525 LNIENVTIYPVSARST 540 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~ 540 (921)
......+++++|++.+
T Consensus 134 ~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 134 LLLLGLPVIAVSALTG 149 (163)
T ss_pred ccccCCceEEEeeecc
Confidence 2335689999999876
No 68
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.57 E-value=2.4e-14 Score=141.85 Aligned_cols=151 Identities=28% Similarity=0.372 Sum_probs=97.9
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|++++....+.....+|.......+.. ++ .++.+|||||+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-------------GG-----------KEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-------------CC-----------eEEEEEECCCcccc
Confidence 5799999999999999998644333333444332211111 11 25899999998543
Q ss_pred hh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 449 LQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 449 ~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
.. ....+...++ ..+|++|+|+|+.++. ....++..+...++|+++|+||+|+.... ....... .+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~----~~~~~ 129 (158)
T cd01879 57 SPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVVVALNMIDEAEKR-GIKIDLD----KLSEL 129 (158)
T ss_pred CCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEEEEEehhhhcccc-cchhhHH----HHHHh
Confidence 21 2233455555 4999999999998753 33455666667789999999999997542 1111111 22222
Q ss_pred hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 525 LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+ ..+++++||+.+ .|+..+.+.+...
T Consensus 130 ~---~~~~~~iSa~~~---------------------------~~~~~l~~~l~~~ 155 (158)
T cd01879 130 L---GVPVVPTSARKG---------------------------EGIDELKDAIAEL 155 (158)
T ss_pred h---CCCeEEEEccCC---------------------------CCHHHHHHHHHHH
Confidence 2 368999999886 6788877777655
No 69
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.56 E-value=5.2e-14 Score=145.22 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=113.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC--CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV--VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~--~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+|+++|.+|+|||||+|+|+|.+...++. .++|.......... .| +.+++||||
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-------------~~-----------~~i~viDTP 57 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-------------DG-----------RRVNVIDTP 57 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-------------CC-----------eEEEEEECc
Confidence 69999999999999999999998765553 34454433322211 11 258999999
Q ss_pred CCChhhh---HH-HHH---HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-C----CeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQ---RQ-QRL---TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-K----KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~---~~-~~~---~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-~----~~vivVlNK~D~~~~~~~~~ 511 (921)
|+.+... .. ..+ .....+.+|++|||+++.+ ++..+...++.+.+. + .++++|+|++|.... ..++
T Consensus 58 G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~-~~~~ 135 (196)
T cd01852 58 GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG-GTLE 135 (196)
T ss_pred CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC-CcHH
Confidence 9975421 11 112 2223478899999999988 888998888888663 2 689999999998865 3445
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+........+..++.....+++.++.+.. .+ -...++.+|.+.+.+.+.+
T Consensus 136 ~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~---------------------~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 136 DYLENSCEALKRLLEKCGGRYVAFNNKAK-GE---------------------EQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHhccHHHHHHHHHhCCeEEEEeCCCC-cc---------------------hhHHHHHHHHHHHHHHHHh
Confidence 54444444455555544567777776541 00 0135677888888887765
No 70
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=4.8e-14 Score=164.61 Aligned_cols=144 Identities=26% Similarity=0.282 Sum_probs=99.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.........| +|.......... .+ ..+.+|
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-------------~~-----------~~~~l~ 91 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-------------NG-----------RRFTVV 91 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-------------CC-----------cEEEEE
Confidence 45689999999999999999999998754433333 333222211110 11 248899
Q ss_pred eCCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||+... .......+..++..||++|||+|++++.+..+..++..++..++|+++|+||+|+.....+.. ..
T Consensus 92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~---~~ 168 (472)
T PRK03003 92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAA---AL 168 (472)
T ss_pred eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhH---HH
Confidence 99998521 223445566788999999999999998888888888888888899999999999864321111 11
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ++. ..++++||+.+
T Consensus 169 -----~~-~g~--~~~~~iSA~~g 184 (472)
T PRK03003 169 -----WS-LGL--GEPHPVSALHG 184 (472)
T ss_pred -----Hh-cCC--CCeEEEEcCCC
Confidence 11 122 23579999987
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55 E-value=1.4e-13 Score=141.71 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC--CCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK--RYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+|+++|.+++|||||+|+|++. .+..... .++. ..+.. ...............+... ...+.+||
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~-----~~~~~---~e~~~g~t~~~~~~~~~~~---~~~~~l~D 71 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERV-----MDSND---LERERGITILAKNTAVTYK---DTKINIVD 71 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccc-----cccch---hHHhcccccccceeEEEEC---CEEEEEEE
Confidence 57999999999999999999963 2211110 0000 00000 0000000000000000000 02489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||.. ++...+..++..+|++++|+|+.+........++..+...+.|+++|+||+|+... ......+.+.+.+
T Consensus 72 tpG~~----~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~ 145 (194)
T cd01891 72 TPGHA----DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA--RPEEVVDEVFDLF 145 (194)
T ss_pred CCCcH----HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHH
Confidence 99974 44556778889999999999998765455555566666678899999999999643 1222233333332
Q ss_pred HHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 522 MKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 522 ~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
..+- .....+++++||+++..-. ....| ..++.+|.+.|.+++
T Consensus 146 ~~~~~~~~~~~~~iv~~Sa~~g~~~~----------------~~~~~-~~~~~~l~~~~~~~~ 191 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWASL----------------NLEDP-SEDLEPLFDTIIEHV 191 (194)
T ss_pred HHhCCccccCccCEEEeehhcccccc----------------ccccc-hhhHHHHHHHHHhcC
Confidence 2211 1225689999999984321 11223 467777777776654
No 72
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=8e-14 Score=170.32 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=115.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+.. +....+||.......+.. +| ..+.|||
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-------------~~-----------~~~~liD 504 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-------------DG-----------EDWLFID 504 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-------------CC-----------CEEEEEE
Confidence 4589999999999999999999998754 344455665432211110 11 2478999
Q ss_pred CCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+... .+.+.. .+..+++.+|++++|+|++++.+..+..++..+...++|+++|+||||+... +..+...
T Consensus 505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-~~~~~~~ 583 (712)
T PRK09518 505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-FRRQRLE 583 (712)
T ss_pred CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-hHHHHHH
Confidence 9997421 011111 2345678999999999999999999998888888889999999999999753 2223332
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+. .....+++++||+++ .|++++.+.+.+.+.
T Consensus 584 ~~~~~~l~---~~~~~~ii~iSAktg---------------------------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 584 RLWKTEFD---RVTWARRVNLSAKTG---------------------------WHTNRLAPAMQEALE 621 (712)
T ss_pred HHHHHhcc---CCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22322211 224578999999987 688888888877654
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.55 E-value=1.2e-13 Score=137.35 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=100.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++.++... ..|++. ++....... ++.. ..+.+||||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~l~~~D~~ 57 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-YQATIGIDFLSKTMYL-------------EDKT---------VRLQLWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCceeeeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 3799999999999999999999887543 223222 221111110 1110 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-c--CCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-W--KKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~--~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +.....+..++..+|++++|+|.+++.+..+. .++..+.. . +.|+++|+||+|+..... ..++.....
T Consensus 58 G~----~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~- 132 (161)
T cd01861 58 GQ----ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA- 132 (161)
T ss_pred Cc----HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH-
Confidence 96 44556788889999999999999876554443 34554432 2 489999999999953311 111211111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.. ...+++++||+.+ .|++++.+.+.+.
T Consensus 133 ---~~----~~~~~~~~Sa~~~---------------------------~~v~~l~~~i~~~ 160 (161)
T cd01861 133 ---KE----LNAMFIETSAKAG---------------------------HNVKELFRKIASA 160 (161)
T ss_pred ---HH----hCCEEEEEeCCCC---------------------------CCHHHHHHHHHHh
Confidence 11 2367999999887 6888888877654
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.55 E-value=9.6e-14 Score=140.78 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||.. +....+..++..+|++|+|+|++++.+......+..+...+.|+++|+||+|+.... .....+
T Consensus 68 ~~~l~Dt~G~~----~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~--~~~~~~ 141 (179)
T cd01890 68 LLNLIDTPGHV----DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD--PERVKQ 141 (179)
T ss_pred EEEEEECCCCh----hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC--HHHHHH
Confidence 47899999984 344566778899999999999998776666665555556778999999999986431 122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+ .+.++.....++++||+++ .|++++.+.+.+.+
T Consensus 142 ~~----~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 QI----EDVLGLDPSEAILVSAKTG---------------------------LGVEDLLEAIVERI 176 (179)
T ss_pred HH----HHHhCCCcccEEEeeccCC---------------------------CCHHHHHHHHHhhC
Confidence 22 2233433346999999987 68888888887654
No 75
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.55 E-value=6.1e-14 Score=162.77 Aligned_cols=140 Identities=26% Similarity=0.297 Sum_probs=100.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+|.|++......+. .++|.......... ++ ..+.+|||||
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-------------~~-----------~~~~liDTpG 56 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-------------GG-----------REFILIDTGG 56 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-------------CC-----------eEEEEEECCC
Confidence 48999999999999999999987544333 33444332221110 11 2489999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+... .+.....+..++..+|+++||+|+..+.+..+..+.+.+++.++|+++|+||+|....+.... .
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~--------~ 128 (429)
T TIGR03594 57 IEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAA--------E 128 (429)
T ss_pred CCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHH--------H
Confidence 8532 234456677788999999999999999999988888888888999999999999875422111 1
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. .....+++++||..+
T Consensus 129 ~~---~lg~~~~~~vSa~~g 145 (429)
T TIGR03594 129 FY---SLGFGEPIPISAEHG 145 (429)
T ss_pred HH---hcCCCCeEEEeCCcC
Confidence 11 112346899999887
No 76
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=5.6e-14 Score=136.88 Aligned_cols=129 Identities=23% Similarity=0.306 Sum_probs=82.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.+.... ..+ |.. +.+ ...+|||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~~---~~~-----------------------------~~~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQA---VEY-----------------------------NDGAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-cee---EEE-----------------------------cCeeecCchh
Confidence 6999999999999999999987642 111 110 111 1268999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
..............++.+|++|+|+|++++.+..+..++..+ ..|+++|+||+|+.......++..+..+ ..
T Consensus 46 ~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~----~~- 117 (142)
T TIGR02528 46 YVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDIERAKELLE----TA- 117 (142)
T ss_pred hhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCHHHHHHHHH----Hc-
Confidence 422223223333457999999999999887765444444332 3599999999998643222222222222 11
Q ss_pred CCCCCeEEEecccch
Q 002437 526 NIENVTIYPVSARST 540 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~ 540 (921)
+ ..+++++||+++
T Consensus 118 ~--~~~~~~~Sa~~~ 130 (142)
T TIGR02528 118 G--AEPIFEISSVDE 130 (142)
T ss_pred C--CCcEEEEecCCC
Confidence 1 247999999987
No 77
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=7.5e-14 Score=162.23 Aligned_cols=141 Identities=28% Similarity=0.345 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|++.+....+ ..++|.......... +| ..+.+||||
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-------------~~-----------~~~~liDT~ 57 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-------------LG-----------REFILIDTG 57 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-------------CC-----------cEEEEEECC
Confidence 68999999999999999999998754333 333444332211110 11 258999999
Q ss_pred CCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+.. ........+..++..+|++|||+|+..+.+..+..+...++..+.|+++|+||+|....+.... +.
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~---~~--- 131 (435)
T PRK00093 58 GIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAY---EF--- 131 (435)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHH---HH---
Confidence 9975 2333455567788999999999999998888888888888888999999999999754221111 11
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ++ ...++++||+.+
T Consensus 132 --~~-lg--~~~~~~iSa~~g 147 (435)
T PRK00093 132 --YS-LG--LGEPYPISAEHG 147 (435)
T ss_pred --Hh-cC--CCCCEEEEeeCC
Confidence 11 12 234789999887
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=9.1e-14 Score=138.98 Aligned_cols=142 Identities=25% Similarity=0.298 Sum_probs=92.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|+|++.++.+.. .|++. .+....... ++.. ..+.++||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQI-------------DGKT---------IKAQIWDT 59 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 478999999999999999999988765332 23332 221111110 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||. ..+......++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 60 ~g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01868 60 AGQ----ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA 135 (165)
T ss_pred CCh----HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence 996 345566778889999999999998765555443 4554443 3579999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++++||+.+
T Consensus 136 ----~~----~~~~~~~~Sa~~~ 150 (165)
T cd01868 136 ----EK----NGLSFIETSALDG 150 (165)
T ss_pred ----HH----cCCEEEEEECCCC
Confidence 11 2468999999987
No 79
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=5.8e-14 Score=159.05 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.-|+++|.+|+|||||||+|++.+....+...||..++....... ++ ..++++||||
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~------------~~-----------~~~~laD~PG 215 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD------------DG-----------RSFVMADIPG 215 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe------------CC-----------ceEEEEECCC
Confidence 469999999999999999999987554556667766654322110 01 2489999999
Q ss_pred CChhhhHH---HHHHHHhcCCCCEEEEEEeCCCC---CCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHH
Q 002437 445 TNVILQRQ---QRLTEEFVPRADLVLFVISADRP---LTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 445 ~~~~~~~~---~~~~~~~l~~aD~il~V~da~~~---~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+....... .......+.++|++|||+|++.. ....+. .+...+.. ..+|+++|+||+|+....+.+
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l-- 293 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL-- 293 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH--
Confidence 85322221 22234456789999999999753 222232 34444443 368999999999985332111
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. +.++ .+++++||+++ .|+++|.+.+.+.+..
T Consensus 294 --~~l~----~~l~---~~i~~iSA~tg---------------------------eGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 294 --EEFK----EKLG---PKVFPISALTG---------------------------QGLDELLYAVAELLEE 328 (424)
T ss_pred --HHHH----HHhC---CcEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1122 2222 57999999887 6899998888877653
No 80
>PRK04213 GTP-binding protein; Provisional
Probab=99.54 E-value=1.9e-13 Score=141.67 Aligned_cols=146 Identities=20% Similarity=0.296 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|.+..+. .+..|++ .....+.+ .++.+||
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~----------------------------~~~~l~D 58 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW----------------------------GDFILTD 58 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee----------------------------cceEEEe
Confidence 4579999999999999999999998743 4333332 21111110 1489999
Q ss_pred CCCCChh-------hhHHHHHHHHhc----CCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhhcCCeEEEEEe
Q 002437 442 TPGTNVI-------LQRQQRLTEEFV----PRADLVLFVISADRPL-----------TESEVVFLRYTQQWKKKVVFVLN 499 (921)
Q Consensus 442 TPG~~~~-------~~~~~~~~~~~l----~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~~~~~vivVlN 499 (921)
|||++.. .+.....+..++ ..+|++++|+|++... ...+.+++..+...+.|+++|+|
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 59 LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 9996422 122333333343 4578999999986421 22344556666667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH--hhCCCCCeEEEecccch
Q 002437 500 KSDLYQNAFELEEAISFVKENTMK--LLNIENVTIYPVSARST 540 (921)
Q Consensus 500 K~D~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~v~~vSA~~~ 540 (921)
|+|+.... ++....+.+.+.. .+.....+++++||+++
T Consensus 139 K~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 178 (201)
T PRK04213 139 KMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG 178 (201)
T ss_pred CccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC
Confidence 99987542 1122222222110 00001236899999873
No 81
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.54 E-value=8.5e-14 Score=138.68 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|.+.+..+. ....||+......... .++.. ..+.|+||||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIE-------------VDGQQ---------CMLEILDTAG 58 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 68999999999999999999987653 3344554322111000 01110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. +...+...+++.+|++++|+|.+++.+..+. .++..+.. .+.|+++|.||+|+........+. ..
T Consensus 59 ~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~ 130 (163)
T cd04136 59 TE----QFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREE----GQ 130 (163)
T ss_pred cc----ccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHH----HH
Confidence 73 4455677788999999999999876554443 34444432 357999999999986431111111 11
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+...+ ..+++++||+.+
T Consensus 131 ~~~~~~---~~~~~~~Sa~~~ 148 (163)
T cd04136 131 ALARQW---GCPFYETSAKSK 148 (163)
T ss_pred HHHHHc---CCeEEEecCCCC
Confidence 112222 268999999987
No 82
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.54 E-value=7.2e-14 Score=154.54 Aligned_cols=160 Identities=24% Similarity=0.209 Sum_probs=105.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.+|+|||||+|+|++.+.....+..||..++....... ++ ..+.|+|||
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~------------~~-----------~~~~i~D~P 213 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD------------DG-----------RSFVIADIP 213 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC------------Cc-----------eEEEEEeCC
Confidence 3579999999999999999999987555556667765554332110 10 258999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCCCC---CCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISADRP---LTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~---~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+..... .......+.+.++|++|||+|+++. ...++.. +.+++.. ..+|+++|+||+|+... ...+
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~~~ 292 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EELA 292 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HHHH
Confidence 9843211 1223345556789999999999864 2333333 3333432 35899999999999754 2333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+..+.+ .+.+ ..+++++||+++ .|++++.+.+.+.+
T Consensus 293 ~~~~~l----~~~~---~~~vi~iSAktg---------------------------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 293 ELLKEL----KKAL---GKPVFPISALTG---------------------------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHH----HHHc---CCcEEEEEccCC---------------------------cCHHHHHHHHHHHh
Confidence 333322 2222 257999999886 68888888887654
No 83
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=2.7e-13 Score=135.27 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=104.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCC-CCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLK-DGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~-~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
|+++|.+|+|||||+|.|++....+ .+. ..+|..+..+... ..++++||||
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~~~D~~g 54 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN---------------------------DKFRLVDLPG 54 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc---------------------------CeEEEecCCC
Confidence 7899999999999999999543322 222 2233322222111 1489999999
Q ss_pred CChh------hhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVI------LQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~------~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
++.. ..........++ ...+++++|+|.+...+..+.++++.+...+.|+++|+||+|+... .+......
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-~~~~~~~~ 133 (170)
T cd01876 55 YGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-SELAKALK 133 (170)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-HHHHHHHH
Confidence 8542 223344445555 3467899999999887777778888888888999999999999744 33333333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.....+.. ....++++++|++.+ .|+.++.+.+.++
T Consensus 134 ~~~~~l~~--~~~~~~~~~~Sa~~~---------------------------~~~~~l~~~l~~~ 169 (170)
T cd01876 134 EIKKELKL--FEIDPPIILFSSLKG---------------------------QGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHh--ccCCCceEEEecCCC---------------------------CCHHHHHHHHHHh
Confidence 33333332 124578999999886 5777887777664
No 84
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=3.7e-14 Score=146.64 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.-..|+|+|.||+|||||.|.|+|.++.+++..+ ||..-...-++... -+++|+|
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e------------------------TQlvf~D 126 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE------------------------TQLVFYD 126 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc------------------------eEEEEec
Confidence 3478999999999999999999999999876554 44432222222111 1589999
Q ss_pred CCCCChhhh--HH------HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-cCCeEEEEEeCCCCCCChHHHHH
Q 002437 442 TPGTNVILQ--RQ------QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 442 TPG~~~~~~--~~------~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
|||+-+... ++ .+-....+..||+|++|+|++.+-+.-.-.+|+.+.. ...|-|+|+||+|.......+-.
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~ 206 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLN 206 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhh
Confidence 999854321 11 1123455689999999999996544444456666655 45799999999998866433322
Q ss_pred HHHHH------------HHHHHHhhC----------CCCCeEEEecccchHHhhcccccccccCcccccccCccccccch
Q 002437 513 AISFV------------KENTMKLLN----------IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF 570 (921)
Q Consensus 513 v~~~~------------~~~~~~~~~----------~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~ 570 (921)
....+ ++.+...-+ ....+||+|||+.| +|+
T Consensus 207 l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G---------------------------~Gi 259 (379)
T KOG1423|consen 207 LKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG---------------------------EGI 259 (379)
T ss_pred hHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc---------------------------cCH
Confidence 22221 111111100 01456999999988 899
Q ss_pred HHHHHHHHHhhc
Q 002437 571 DKLEKLLYSFLD 582 (921)
Q Consensus 571 ~~L~~~l~~~l~ 582 (921)
++|.++|.....
T Consensus 260 kdlkqyLmsqa~ 271 (379)
T KOG1423|consen 260 KDLKQYLMSQAP 271 (379)
T ss_pred HHHHHHHHhcCC
Confidence 999999987654
No 85
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.54 E-value=1.6e-13 Score=137.13 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+|+|+|.+|+|||||+|+|++.++.+ ...||... ....... . ++.. ..+.++|||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~ 57 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVS------------V-RNKE---------VRVNFFDLS 57 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEE------------E-CCeE---------EEEEEEECC
Confidence 379999999999999999999987644 33343321 1110010 0 0110 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--------cCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--------WKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--------~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
|. +....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.... ...++.
T Consensus 58 G~----~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 133 (168)
T cd04119 58 GH----PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG 133 (168)
T ss_pred cc----HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHH
Confidence 97 34456777888999999999999876544433 34444432 347899999999987321 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... . ...++|.+||+.+ .|+.++.+.+.+.+.
T Consensus 134 ~~~~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~l~ 167 (168)
T cd04119 134 RLWAE----S----KGFKYFETSACTG---------------------------EGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHH----H----cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 22111 1 1367999999987 688888888776553
No 86
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.54 E-value=9.1e-14 Score=144.71 Aligned_cols=167 Identities=24% Similarity=0.238 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC---------CCCcccee-EEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG---------VVPTTNEI-TFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~---------~~~tT~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
+|+++|++|+|||||+|+|++..-.... ...++... ..-.+.+....+.++..........+.+. ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP---KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC---Cc
Confidence 4899999999999999999875422210 00011100 00000111111111111111111111111 13
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCCh-HHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~-~~~~~v 513 (921)
.+.|+||||.. ++...+...+..+|++|+|+|+..+........+..+...+ +++|+|+||+|+.... +....+
T Consensus 78 ~~~liDTpG~~----~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 78 KFIIADTPGHE----QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred eEEEEECCcHH----HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence 58999999973 22233556678999999999999887666655555555555 4678899999997532 223344
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...++..+.. ++....+++++||+.+
T Consensus 154 ~~~~~~~~~~-~~~~~~~ii~iSA~~g 179 (208)
T cd04166 154 VADYLAFAAK-LGIEDITFIPISALDG 179 (208)
T ss_pred HHHHHHHHHH-cCCCCceEEEEeCCCC
Confidence 4444433333 3444467999999987
No 87
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.54 E-value=1.2e-13 Score=137.37 Aligned_cols=145 Identities=20% Similarity=0.341 Sum_probs=96.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.|..... ..|..+ .+. ...+|||||.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v---~~~----------------------------~~~~iDtpG~ 47 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV---EFN----------------------------DKGDIDTPGE 47 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE---EEC----------------------------CCCcccCCcc
Confidence 69999999999999999999865211 122111 111 0126999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.....+....+...+..+|++++|+|++.+.+.....++. + ..++|+++++||+|+... +.+.+.+.+ ...
T Consensus 48 ~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~--~~~~~~~~~----~~~- 118 (158)
T PRK15467 48 YFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDA--DVAATRKLL----LET- 118 (158)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCcc--cHHHHHHHH----HHc-
Confidence 6554444444555679999999999998765433322222 2 235789999999998532 223322222 222
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. ..|++++||+++ .|++++.+++.+.+.
T Consensus 119 ~~-~~p~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 119 GF-EEPIFELNSHDP---------------------------QSVQQLVDYLASLTK 147 (158)
T ss_pred CC-CCCEEEEECCCc---------------------------cCHHHHHHHHHHhch
Confidence 22 268999999997 789999999888765
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.53 E-value=1.6e-13 Score=136.82 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=101.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+++..+.+.. .++. ....+.+.. ..++.. -.+.++||||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~~-~~~~~~~~~-----------~~~~~~---------~~~~i~Dt~G 58 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ-LSTY-ALTLYKHNA-----------KFEGKT---------ILVDFWDTAG 58 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCce-eeEEEEEEE-----------EECCEE---------EEEEEEeCCC
Confidence 37999999999999999999987764332 2222 112211110 001110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
. +.+......++..+|++|+|+|.+++.+..+. .++..++.. ..|+++|+||+|+... ..++... +
T Consensus 59 ~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~-----~ 127 (161)
T cd04124 59 Q----ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--VTQKKFN-----F 127 (161)
T ss_pred c----hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--HHHHHHH-----H
Confidence 6 45566788899999999999999887665543 456666543 6899999999998532 1111111 1
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 128 ~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 158 (161)
T cd04124 128 AEK---HNLPLYYVSAADG---------------------------TNVVKLFQDAIKLAV 158 (161)
T ss_pred HHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2368999999987 678877777765543
No 89
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.1e-13 Score=158.45 Aligned_cols=160 Identities=19% Similarity=0.125 Sum_probs=104.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.+|||||||||+|++.+....++..||..+........+ ..++|+|||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~------------------------~~f~laDtP 214 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD------------------------TRFTVADVP 214 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC------------------------eEEEEEECC
Confidence 35799999999999999999999876555666677665543322111 148999999
Q ss_pred CCChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCC----CHHHHHH-HHHhh--------------hcCCeEEEEEeCC
Q 002437 444 GTNVILQR---QQRLTEEFVPRADLVLFVISADRPL----TESEVVF-LRYTQ--------------QWKKKVVFVLNKS 501 (921)
Q Consensus 444 G~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~----t~~e~~~-l~~l~--------------~~~~~vivVlNK~ 501 (921)
|+...... .......++.++|++|||+|++... ..++.+. ...+. ...+|+++|+||+
T Consensus 215 Gliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKi 294 (500)
T PRK12296 215 GLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKI 294 (500)
T ss_pred CCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECc
Confidence 98422111 1122445678899999999997421 1222221 11221 2358999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 502 DLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 502 D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
|+.... + ..+.+...+.. ...+||++||+++ .|+.+|...|.+.+
T Consensus 295 DL~da~-e---l~e~l~~~l~~----~g~~Vf~ISA~tg---------------------------eGLdEL~~~L~ell 339 (500)
T PRK12296 295 DVPDAR-E---LAEFVRPELEA----RGWPVFEVSAASR---------------------------EGLRELSFALAELV 339 (500)
T ss_pred cchhhH-H---HHHHHHHHHHH----cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHH
Confidence 986432 2 22222222222 2368999999887 68999988888776
Q ss_pred c
Q 002437 582 D 582 (921)
Q Consensus 582 ~ 582 (921)
.
T Consensus 340 ~ 340 (500)
T PRK12296 340 E 340 (500)
T ss_pred H
Confidence 5
No 90
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=1.7e-13 Score=137.07 Aligned_cols=143 Identities=19% Similarity=0.300 Sum_probs=91.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||++++.+..+... ..++.. .+....+. .++.. ..+.++||
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~D~ 59 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLE-------------IEGKR---------VKLQIWDT 59 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 48999999999999999999998765432 222221 11111110 01110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||. +.....+..++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+....+. .++....
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~- 134 (165)
T cd01864 60 AGQ----ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL- 134 (165)
T ss_pred CCh----HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH-
Confidence 996 44556678888999999999999987654443 45555543 45789999999998754211 1222111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+..+ ...++++||+++
T Consensus 135 ----~~~~~--~~~~~e~Sa~~~ 151 (165)
T cd01864 135 ----AEKNG--MLAVLETSAKES 151 (165)
T ss_pred ----HHHcC--CcEEEEEECCCC
Confidence 11112 257899999987
No 91
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.53 E-value=2.5e-13 Score=134.93 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=91.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|++++.++. ....||+......... . ++.. ..+.+|||||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 58 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVV------------I-DGET---------CLLDILDTAG 58 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 68999999999999999999987753 2344554322111000 0 1110 1377899999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. +++..+...++..+|++++|+|.++..+..+.. ++..+. ..+.|+++|.||+|+........+.....
T Consensus 59 ~----~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-- 132 (162)
T cd04138 59 Q----EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-- 132 (162)
T ss_pred C----cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH--
Confidence 6 345567778899999999999998754444432 333333 24679999999999875322222222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++++||+.+
T Consensus 133 --~~----~~~~~~~~Sa~~~ 147 (162)
T cd04138 133 --KS----YGIPYIETSAKTR 147 (162)
T ss_pred --HH----hCCeEEEecCCCC
Confidence 11 1357999999987
No 92
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.53 E-value=2e-13 Score=136.75 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=101.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+.++.+. ..||+. .+..... ..++.. ..+.+||||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~-------------~~~~~~---------~~~~l~Dt~ 58 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTV-------------FRNDKR---------VKLQIWDTA 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEE-------------EECCEE---------EEEEEEECC
Confidence 6899999999999999999999876432 233332 1111000 001110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ++.......+++.+|++++|+|.+++.+..+. ++++.+.. ...|+++|+||+|+..... ..++..+
T Consensus 59 g~----~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~--- 131 (165)
T cd01865 59 GQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ--- 131 (165)
T ss_pred Ch----HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH---
Confidence 96 34556678889999999999999876544433 35555543 3578999999999965421 1121111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..++|++||+.+ .|++++.+.+.+.+.
T Consensus 132 --~~~~~---~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 163 (165)
T cd01865 132 --LADQL---GFEFFEASAKEN---------------------------INVKQVFERLVDIIC 163 (165)
T ss_pred --HHHHc---CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 357999999887 688888887766543
No 93
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.53 E-value=1.8e-13 Score=137.09 Aligned_cols=142 Identities=21% Similarity=0.318 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|.+++.++.. ...+|.. .+....... .+.. ..+.+|||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D~ 58 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 58 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3789999999999999999999877543 2333322 111111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||. +........+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|.||+|+..... ..++....
T Consensus 59 ~G~----~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~- 133 (166)
T cd01869 59 AGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF- 133 (166)
T ss_pred CCc----HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH-
Confidence 996 34556678888999999999999876544443 24444443 3579999999999864311 11222111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 134 ----~~~---~~~~~~~~Sa~~~ 149 (166)
T cd01869 134 ----ADE---LGIPFLETSAKNA 149 (166)
T ss_pred ----HHH---cCCeEEEEECCCC
Confidence 111 2468999999987
No 94
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.52 E-value=1.3e-13 Score=137.98 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=87.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCC-----CCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYL-----KDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~-----~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+|+|+|.+|+|||||+|.|.+.... +....||... +..+.+ ++ ..+.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------------~~-----------~~~~l 54 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV---------------GN-----------ARLKF 54 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE---------------CC-----------EEEEE
Confidence 4889999999999999999875321 1111122110 000111 01 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|+.++.+..+. .++..+. ..+.|+++|+||+|+... ....++.
T Consensus 55 ~Dt~G~~----~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~-~~~~~~~ 129 (167)
T cd04160 55 WDLGGQE----SLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA-LSVEEIK 129 (167)
T ss_pred EECCCCh----hhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC-CCHHHHH
Confidence 9999974 3445677788999999999999865432222 2333332 246899999999998643 2223333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+..... ..+....+++++||+++
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 130 EVFQDKAE-EIGRRDCLVLPVSALEG 154 (167)
T ss_pred HHhccccc-cccCCceEEEEeeCCCC
Confidence 33222211 12234568999999987
No 95
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.52 E-value=2.8e-13 Score=136.13 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.+++.++.+......+..+....... ++.. ..+.++|||
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 61 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-------------DGKQ---------IKLQIWDTA 61 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 479999999999999999999988764432222222221111100 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ++.......+++.+|++|+|+|++++.+..+. .++..++. .+.|+++|.||+|+..... ..++.....
T Consensus 62 G~----~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~- 136 (168)
T cd01866 62 GQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA- 136 (168)
T ss_pred Cc----HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH-
Confidence 95 44556678888999999999999876555444 35555544 3579999999999874311 122222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....++++||+.+
T Consensus 137 ---~~----~~~~~~e~Sa~~~ 151 (168)
T cd01866 137 ---KE----HGLIFMETSAKTA 151 (168)
T ss_pred ---HH----cCCEEEEEeCCCC
Confidence 11 2467999999886
No 96
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.52 E-value=2.4e-13 Score=135.49 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|++|+|||||+|.|++.++.+. ..++.. .+....... ++.. ..+.++|||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 57 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ-YKSTIGVDFKTKTIEV-------------DGKR---------VKLQIWDTA 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 4799999999999999999998876322 222221 111111110 1111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ..+......++..+|++++|+|..++.+.++. .++..+.. .+.|+++|+||+|+..... ..+.+.+..
T Consensus 58 G~----~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~- 132 (164)
T smart00175 58 GQ----ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA- 132 (164)
T ss_pred Ch----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH-
Confidence 96 34556778888999999999999887655544 34455433 4589999999999875321 122222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.. ..+++++|++.+ .|++++.+.+.+.+.
T Consensus 133 ----~~~---~~~~~e~Sa~~~---------------------------~~i~~l~~~i~~~~~ 162 (164)
T smart00175 133 ----EEH---GLPFFETSAKTN---------------------------TNVEEAFEELAREIL 162 (164)
T ss_pred ----HHc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 112 357999999886 688888888776553
No 97
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.52 E-value=1.8e-13 Score=136.39 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|.+++..+ .....|++.......... ++.. ..+.++|||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 58 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEI-------------DGQW---------AILDILDTA 58 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47899999999999999999998764 334445544221111100 1110 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. +...+...++..+|++++|+|++++.+..+.. ++..+. ..+.|+++|+||+|+..... ..++..+.
T Consensus 59 G~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~- 133 (164)
T cd04145 59 GQE----EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL- 133 (164)
T ss_pred CCc----chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-
Confidence 973 44556778889999999999998765544432 333333 24679999999999864321 11121111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 134 ---~~~----~~~~~~~~Sa~~~ 149 (164)
T cd04145 134 ---ARK----LKIPYIETSAKDR 149 (164)
T ss_pred ---HHH----cCCcEEEeeCCCC
Confidence 111 2357999999987
No 98
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.52 E-value=2.6e-13 Score=140.03 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.+++.++. ....||+........ ...+|.. ..+.||||||
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~------------i~~~~~~---------~~l~i~Dt~G 58 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPA------------VVLSGRV---------YDLHILDVPN 58 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeE------------EEECCEE---------EEEEEEeCCC
Confidence 37999999999999999999988764 334566532111000 0001211 1478999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh------hcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ------QWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~------~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
.... ..+.......++..+|++|+|+|++++.+..... +++.+. ..+.|+++|.||+|+........+.
T Consensus 59 ~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~ 138 (198)
T cd04142 59 MQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHV 138 (198)
T ss_pred cccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHH
Confidence 7432 1222223445678999999999999876555443 334443 2457999999999996431111111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .....+. ...++|++||+.+ .|++++.+.+...+..
T Consensus 139 ~---~~~~~~~---~~~~~~e~Sak~g---------------------------~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 139 L---SVLVRKS---WKCGYLECSAKYN---------------------------WHILLLFKELLISATT 175 (198)
T ss_pred H---HHHHHHh---cCCcEEEecCCCC---------------------------CCHHHHHHHHHHHhhc
Confidence 1 1111111 2478999999987 5788877777665543
No 99
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.52 E-value=1.5e-13 Score=136.72 Aligned_cols=142 Identities=21% Similarity=0.276 Sum_probs=88.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.|.+....+....||.. .....+.. .+ ..+.++||||.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g-~~~~~~~~-------------~~-----------~~~~l~Dt~G~ 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG-FNVESFEK-------------GN-----------LSFTAFDMSGQ 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc-cceEEEEE-------------CC-----------EEEEEEECCCC
Confidence 3789999999999999999987543344445443 11111100 00 14889999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
.+....+..++..+|++|||+|++++.+.... ..+..+ ...+.|+++|+||+|+.... ..+++...+.
T Consensus 56 ----~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~ 130 (162)
T cd04157 56 ----GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLG 130 (162)
T ss_pred ----HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhC
Confidence 34556677889999999999999876543222 223322 12468999999999987531 1122221111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... .....+++++||+++
T Consensus 131 --~~~~-~~~~~~~~~~Sa~~g 149 (162)
T cd04157 131 --LENI-KDKPWHIFASNALTG 149 (162)
T ss_pred --Cccc-cCceEEEEEeeCCCC
Confidence 0111 112346899999987
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.52 E-value=2.6e-13 Score=135.00 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=91.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||+|+|++..+... ..|+.. .. ..+.+.. .. ..+.++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~----------~~~~l~D 55 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDG--------------KK----------VKLAIWD 55 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECC--------------EE----------EEEEEEE
Confidence 4799999999999999999998876432 222221 11 1111110 00 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. +.+......+++.+|++++|+|.+++.+..... ++..+. ..+.|+++|+||+|+.......++....
T Consensus 56 ~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~ 131 (161)
T cd01863 56 TAGQ----ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF 131 (161)
T ss_pred CCCc----hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH
Confidence 9996 344555677889999999999998765544432 344343 3457899999999997443233333332
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 132 ~~~--------~~~~~~~~Sa~~~ 147 (161)
T cd01863 132 ARK--------HNMLFIETSAKTR 147 (161)
T ss_pred HHH--------cCCEEEEEecCCC
Confidence 221 2468999999887
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.52 E-value=2.8e-13 Score=133.55 Aligned_cols=141 Identities=21% Similarity=0.343 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+....+. ..+|+.. ........ ++.. ..+.++|+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 57 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEI-------------DGKT---------VKLQIWDTA 57 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEE-------------CCEE---------EEEEEEecC
Confidence 4799999999999999999999876544 2222221 11111110 0100 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNA-FELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~-~~~~~v~~~~~ 518 (921)
|. ..+......++..+|++++|+|++++.+.... .++..+... ..|+++|+||+|..... ...+++.+...
T Consensus 58 g~----~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 133 (159)
T cd00154 58 GQ----ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK 133 (159)
T ss_pred Ch----HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence 96 44556778888999999999999875433332 345555443 48999999999996221 12222222221
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++.+||+.+
T Consensus 134 ----~----~~~~~~~~sa~~~ 147 (159)
T cd00154 134 ----E----NGLLFFETSAKTG 147 (159)
T ss_pred ----H----cCCeEEEEecCCC
Confidence 1 3478999999886
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.52 E-value=3.4e-13 Score=136.17 Aligned_cols=144 Identities=20% Similarity=0.298 Sum_probs=91.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|.+..+. ...||.. +...... .++ ..+.++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~~t~g-~~~~~~~-------------~~~-----------~~l~l~D 64 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID--TISPTLG-FQIKTLE-------------YEG-----------YKLNIWD 64 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC--CcCCccc-cceEEEE-------------ECC-----------EEEEEEE
Confidence 35689999999999999999999987542 2333332 1110000 001 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++++|+|++++.+..+. .++..+ ...+.|+++|+||+|+.... ..+++...
T Consensus 65 ~~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~ 139 (173)
T cd04154 65 VGGQK----TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREA 139 (173)
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHH
Confidence 99973 3445677889999999999999876443332 233332 22568999999999987531 22222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... . ......+++++||+++
T Consensus 140 ~~~~--~-~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 140 LELD--K-ISSHHWRIQPCSAVTG 160 (173)
T ss_pred hCcc--c-cCCCceEEEeccCCCC
Confidence 1100 0 1123568999999987
No 103
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.52 E-value=2.5e-13 Score=136.05 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|.+++..+. ....||+......... . ++.. ..+.++||||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVIS------------C-SKNI---------CTLQITDTTG 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 68999999999999999999988763 2334443321111000 0 0110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
.. ++..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+....+ ..++...
T Consensus 59 ~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~- 133 (165)
T cd04140 59 SH----QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA- 133 (165)
T ss_pred CC----cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-
Confidence 74 3445566778899999999999987665543 34444432 4579999999999965311 0111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.... ...+++++||+.+
T Consensus 134 ----~~~~---~~~~~~e~SA~~g 150 (165)
T cd04140 134 ----CATE---WNCAFMETSAKTN 150 (165)
T ss_pred ----HHHH---hCCcEEEeecCCC
Confidence 1111 2367899999987
No 104
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.51 E-value=3.4e-13 Score=135.64 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=99.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++..+.+. ..++.. .+...... .+.+. ..+.++|||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~------------~~~~~----------~~~~~~D~~ 57 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVT------------VDDKL----------VTLQIWDTA 57 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEE------------ECCEE----------EEEEEEeCC
Confidence 4799999999999999999999875432 222211 11111000 00111 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHH----hh---hcCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRY----TQ---QWKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~----l~---~~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|. +.+......+++.+|++|+|+|++++.+..+.. +... +. ..+.|+++|+||+|+..+.. ..++..
T Consensus 58 g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (172)
T cd01862 58 GQ----ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ 133 (172)
T ss_pred Ch----HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence 96 345556778899999999999998765544332 2222 22 12679999999999974211 122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. .+ ..+++++|++++ .|+..+.+.+.+.+.
T Consensus 134 ~~~----~~-~~--~~~~~~~Sa~~~---------------------------~gv~~l~~~i~~~~~ 167 (172)
T cd01862 134 QWC----QS-NG--NIPYFETSAKEA---------------------------INVEQAFETIARKAL 167 (172)
T ss_pred HHH----HH-cC--CceEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 11 11 368999999987 688888888776654
No 105
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.51 E-value=2.9e-13 Score=135.78 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.++|+++|.+|+|||||+|++.+.++.+ ...||+.. . ..+.+ ++.. ..+.++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~---------------~~~~---------~~l~l~ 57 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIEL---------------DGKK---------IKLQIW 57 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEE---------------CCEE---------EEEEEE
Confidence 5799999999999999999999887643 33443321 1 11111 1110 147899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||. +........+++.+|++|+|+|++++.+..+. +++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 58 D~~g~----~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T cd01867 58 DTAGQ----ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEA 133 (167)
T ss_pred eCCch----HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHH
Confidence 99996 34455677888999999999999876555443 34444443 3579999999999974311 1122211
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. ... ...+++++||+.+ .|+.++...+.+.+
T Consensus 134 ~----~~~----~~~~~~~~Sa~~~---------------------------~~v~~~~~~i~~~~ 164 (167)
T cd01867 134 L----ADE----YGIKFLETSAKAN---------------------------INVEEAFFTLAKDI 164 (167)
T ss_pred H----HHH----cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 1 111 2367999999987 67888777776554
No 106
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.51 E-value=2.9e-13 Score=141.96 Aligned_cols=146 Identities=20% Similarity=0.311 Sum_probs=107.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhh----------------------c----
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ----------------------R---- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~----------------------~---- 416 (921)
..|.|+|+|+.|+||||++++|.|..++|.+...+|.+++.+........... .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999998888888888888888765433211000 0
Q ss_pred --ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHH-HHH
Q 002437 417 --CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVP-RADLVLFVISADRPLTESE-VVF 483 (921)
Q Consensus 417 --~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e-~~~ 483 (921)
.....+..+...+..|...+++||||||+... .....+++..|+. ..++|++|+|+....+.++ .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00111222344455666678999999999532 1234567888887 5679999999987776666 688
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChH
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~ 508 (921)
.+.+...+.|+++|+||+|......
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~~ 209 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEGT 209 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCccH
Confidence 8889889999999999999986543
No 107
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.51 E-value=2.1e-13 Score=136.14 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=100.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|++.+..+. ....||+......... .++.. ..+.++||||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~g 57 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDSYRKQIE-------------IDGEV---------CLLDILDTAG 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhhEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 47999999999999999999987754 3344444322111100 01110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. ++......++..+|++++|+|++++.+..+.. +...+. ....|+++|.||+|+..... ..+.....
T Consensus 58 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~-- 131 (164)
T smart00173 58 QE----EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKEL-- 131 (164)
T ss_pred cc----cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHH--
Confidence 74 34456677889999999999998765544432 223332 23579999999999875311 11111111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 132 ---~~~~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 132 ---ARQW---GCPFLETSAKER---------------------------VNVDEAFYDLVREIR 162 (164)
T ss_pred ---HHHc---CCEEEEeecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1111 368999999987 688888877766543
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=4.6e-13 Score=134.24 Aligned_cols=157 Identities=24% Similarity=0.274 Sum_probs=99.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.+..+... ..+++...+ ..... .... ..+.+|||||.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~-~~~~~------------~~~~----------~~~~i~Dt~G~ 57 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEIT-IPADV------------TPER----------VPTTIVDTSSR 57 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceE-eeeee------------cCCe----------EEEEEEeCCCc
Confidence 689999999999999999998776422 222221111 10000 0011 14889999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHH--HHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFE--LEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~--~~~v~~~~~~ 519 (921)
. .....+..++..+|++++|+|.+++.+..+. .++..++. .+.|+++|+||+|+.+.... .++....+..
T Consensus 58 ~----~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~ 133 (166)
T cd01893 58 P----QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN 133 (166)
T ss_pred h----hhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHH
Confidence 4 2334456677999999999999987766653 34444443 36899999999999754221 1221222222
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. . ..+++.+||+++ .|++++...+...+.
T Consensus 134 ~~~---~--~~~~~e~Sa~~~---------------------------~~v~~lf~~~~~~~~ 164 (166)
T cd01893 134 EFR---E--IETCVECSAKTL---------------------------INVSEVFYYAQKAVL 164 (166)
T ss_pred HHh---c--ccEEEEeccccc---------------------------cCHHHHHHHHHHHhc
Confidence 211 1 137999999987 678888877776654
No 109
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.51 E-value=2.7e-13 Score=134.92 Aligned_cols=142 Identities=22% Similarity=0.272 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.|++.++.+......+.......... ++.. ..+.++||||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~l~D~~G 58 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-------------GGKR---------VKLQIWDTAG 58 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-------------CCEE---------EEEEEEECcc
Confidence 47999999999999999999988764432221111111111100 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
. +.+......+++.+|++++|+|.+++.+..+. .++..+. ..+.|+++|+||+|+..... ..+++.....
T Consensus 59 ~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~- 133 (161)
T cd04113 59 Q----ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ- 133 (161)
T ss_pred h----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH-
Confidence 6 34455677888999999999999987655553 3444443 34679999999999874311 1122222211
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++.+||+.+
T Consensus 134 ----~---~~~~~~~~Sa~~~ 147 (161)
T cd04113 134 ----E---NGLLFLETSALTG 147 (161)
T ss_pred ----H---cCCEEEEEECCCC
Confidence 1 2378999999887
No 110
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.51 E-value=1.3e-13 Score=139.02 Aligned_cols=142 Identities=28% Similarity=0.283 Sum_probs=86.0
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|.+.+.......++|..+........ ++ ..+.++||||+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~------------~~-----------~~~~i~DtpG~~~~ 57 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP------------DG-----------ARIQVADIPGLIEG 57 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC------------CC-----------CeEEEEeccccchh
Confidence 58999999999999999987633334445543322111100 01 25899999998432
Q ss_pred hhHH---HHHHHHhcCCCCEEEEEEeCCCCC------CHHHHH-HHHHhhh----------cCCeEEEEEeCCCCCCChH
Q 002437 449 LQRQ---QRLTEEFVPRADLVLFVISADRPL------TESEVV-FLRYTQQ----------WKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 449 ~~~~---~~~~~~~l~~aD~il~V~da~~~~------t~~e~~-~l~~l~~----------~~~~vivVlNK~D~~~~~~ 508 (921)
.... ......++..+|++++|+|+.++. +..+.. +...+.. .+.|+++|+||+|+....
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~- 136 (176)
T cd01881 58 ASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE- 136 (176)
T ss_pred hhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-
Confidence 1111 112345567899999999998763 333322 2223321 368999999999997542
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...... ..........+++++||+.+
T Consensus 137 ~~~~~~------~~~~~~~~~~~~~~~Sa~~~ 162 (176)
T cd01881 137 ELEEEL------VRELALEEGAEVVPISAKTE 162 (176)
T ss_pred HHHHHH------HHHHhcCCCCCEEEEehhhh
Confidence 222211 11112224567999999887
No 111
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.50 E-value=2.4e-13 Score=139.89 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|.+|+|||||+|.|++..+......+|+........- ..+|.. ..+.+|||||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~---------~~l~i~D~~G 59 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM------------VVGERV---------VTLGIWDTAG 59 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEE------------EECCEE---------EEEEEEECCC
Confidence 3799999999999999999998876543344444321111000 001111 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHH-HHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAI-SFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~-~~~~~~ 520 (921)
. ++...+...++..+|++|+|+|.+++.+..+. .++..+... +.|+++|.||+|+.........+. ..+..
T Consensus 60 ~----~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~- 134 (193)
T cd04118 60 S----ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD- 134 (193)
T ss_pred c----hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH-
Confidence 6 34445566788899999999999876554443 356655543 579999999999864321111110 11111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~i~~~~~ 166 (193)
T cd04118 135 FADE---IKAQHFETSSKTG---------------------------QNVDELFQKVAEDFV 166 (193)
T ss_pred HHHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2367999999987 678888777766554
No 112
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.50 E-value=4.2e-13 Score=159.44 Aligned_cols=147 Identities=21% Similarity=0.301 Sum_probs=98.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+.|+++|.+++|||||+|+|+|... .+.... ..|..+....+. ++. ..+.+||
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~---------------------~~~---~~v~~iD 56 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP---------------------LPD---YRLGFID 56 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE---------------------eCC---EEEEEEE
Confidence 3689999999999999999998542 111111 122222111111 000 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. +.+...+..++..+|++++|+|++++...+..+.+..+...+.| +++|+||+|+... +..+.+.+.+.+.
T Consensus 57 tPGh----e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~ 131 (581)
T TIGR00475 57 VPGH----EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQI 131 (581)
T ss_pred CCCH----HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHH
Confidence 9996 34445566778899999999999987767777777667667777 9999999999843 3444444455444
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.........+++++||+++
T Consensus 132 l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCC
Confidence 44331112578999999987
No 113
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.50 E-value=6.8e-13 Score=139.14 Aligned_cols=114 Identities=22% Similarity=0.188 Sum_probs=85.3
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.++++||||.. .+...+...+ ..+|++++|+|++.+.+..+.+++..+...+.|+++|+||+|+.. .+....
T Consensus 84 ~~i~liDtpG~~----~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~-~~~~~~ 158 (224)
T cd04165 84 KLVTFIDLAGHE----RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP-ANILQE 158 (224)
T ss_pred cEEEEEECCCcH----HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC-HHHHHH
Confidence 358999999973 3323334444 379999999999999999999999999999999999999999874 345566
Q ss_pred HHHHHHHHHHHh----------------------hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccch
Q 002437 513 AISFVKENTMKL----------------------LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF 570 (921)
Q Consensus 513 v~~~~~~~~~~~----------------------~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~ 570 (921)
..+.+.+.+... .....+|||++||.++ .|+
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg---------------------------~Gi 211 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG---------------------------EGL 211 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc---------------------------cCH
Confidence 666665554310 0112468999999987 799
Q ss_pred HHHHHHHHHh
Q 002437 571 DKLEKLLYSF 580 (921)
Q Consensus 571 ~~L~~~l~~~ 580 (921)
+.|.++|...
T Consensus 212 ~~L~~~L~~l 221 (224)
T cd04165 212 DLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHhc
Confidence 9999888653
No 114
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=3.7e-13 Score=138.32 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee-EE--EEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI-TF--LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.+.+.++......+|+... .. +.+ ++.. -.+.|||
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~---------~~~~i~D 56 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV---------------DGVK---------VKLQIWD 56 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE---------------CCEE---------EEEEEEe
Confidence 4799999999999999999998876544444444311 11 111 1110 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||. .+.......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 57 t~G~----~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~- 131 (191)
T cd04112 57 TAGQ----ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER- 131 (191)
T ss_pred CCCc----HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH-
Confidence 9996 44555677888999999999999876554433 24444443 3579999999999864211 1111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+... ...+++++||+.+ .|+.++...+.+.+.+
T Consensus 132 ----l~~~---~~~~~~e~Sa~~~---------------------------~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 132 ----LAKE---YGVPFMETSAKTG---------------------------LNVELAFTAVAKELKH 164 (191)
T ss_pred ----HHHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 1111 2368999999987 5788888888766654
No 115
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.50 E-value=6.3e-13 Score=132.46 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=90.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+|+|++|+|||||+|+|++.++.+ ...+++.. + ..+.+.. .. -.+.+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~--------------~~----------~~~~i~D 56 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDD--------------TT----------VKFEIWD 56 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECC--------------EE----------EEEEEEe
Confidence 689999999999999999999988754 22333321 1 1111111 00 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||. ++.......+++.+|++++|+|++++.+.... .++..+.. ...|+++|+||+|+.... ...++....
T Consensus 57 ~~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 132 (163)
T cd01860 57 TAGQ----ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY 132 (163)
T ss_pred CCch----HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence 9995 34455667788999999999999876544333 34455543 347899999999987321 122222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. . ...+++++||+++
T Consensus 133 ~~----~----~~~~~~~~Sa~~~ 148 (163)
T cd01860 133 AD----E----NGLLFFETSAKTG 148 (163)
T ss_pred HH----H----cCCEEEEEECCCC
Confidence 11 1 1367999999987
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.49 E-value=2.9e-13 Score=135.26 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.++...+ +....||+......... . ++.. ..+.++||||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVE------------V-DGQQ---------CMLEILDTAG 58 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999996654 33445555432111110 0 1110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
. ++...+...+++.+|++++|+|.+++.+..+. +++..+. ..+.|+++|.||+|+..... ..++. ..
T Consensus 59 ~----~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~-- 131 (164)
T cd04175 59 T----EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QN-- 131 (164)
T ss_pred c----ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HH--
Confidence 7 34556677788999999999999876554443 2444443 24579999999999964311 11111 11
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+ ..+++++||+++
T Consensus 132 --~~~~~---~~~~~~~Sa~~~ 148 (164)
T cd04175 132 --LARQW---GCAFLETSAKAK 148 (164)
T ss_pred --HHHHh---CCEEEEeeCCCC
Confidence 11112 368999999987
No 117
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.49 E-value=5.6e-13 Score=131.46 Aligned_cols=140 Identities=19% Similarity=0.325 Sum_probs=87.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|++|+|||||+|+|.+.++.+ ...||+. +...... .+. ..+.++||||.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~-~~~~~~~--------------~~~----------~~~~~~D~~g~- 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVG-FNMRKVT--------------KGN----------VTLKVWDLGGQ- 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCC-cceEEEE--------------ECC----------EEEEEEECCCC-
Confidence 7899999999999999999987643 2333332 1111110 011 14899999996
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
..+...+..++..+|++++|+|++.+.+... ...+..+. ..+.|+++|+||+|+... ....++...+. +
T Consensus 55 ---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~--~ 128 (159)
T cd04159 55 ---PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA-LSVDELIEQMN--L 128 (159)
T ss_pred ---HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-cCHHHHHHHhC--c
Confidence 3455667888999999999999986433222 12333322 246799999999998754 22222222211 0
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
. .......+++++|++++
T Consensus 129 ~-~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 129 K-SITDREVSCYSISCKEK 146 (159)
T ss_pred c-cccCCceEEEEEEeccC
Confidence 1 11123467899999887
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=3e-13 Score=165.26 Aligned_cols=142 Identities=29% Similarity=0.325 Sum_probs=98.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|.+....+..| +|.......... ++ ..+.+|||
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-------------~~-----------~~~~liDT 330 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-------------AG-----------TDFKLVDT 330 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-------------CC-----------EEEEEEeC
Confidence 368999999999999999999998754433333 333322211110 11 24889999
Q ss_pred CCCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.. ........+..++..+|++|||+|+.++++..+..+...++..++|+++|+||+|+...... ..+
T Consensus 331 ~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~~--- 404 (712)
T PRK09518 331 GGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AAE--- 404 (712)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HHH---
Confidence 99853 12234455667889999999999999888888888888888899999999999998643211 111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. ++ ...+|++||+.+
T Consensus 405 --~~~-lg--~~~~~~iSA~~g 421 (712)
T PRK09518 405 --FWK-LG--LGEPYPISAMHG 421 (712)
T ss_pred --HHH-cC--CCCeEEEECCCC
Confidence 111 12 234689999987
No 119
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.49 E-value=6.3e-13 Score=132.30 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+....+. ...||+.. +..+.+. . ..+.++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~----------------~----------~~~~l~D~~ 52 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYK----------------N----------ISFTVWDVG 52 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEEC----------------C----------EEEEEEECC
Confidence 47999999999999999999765543 24444431 1111110 0 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.. +....+..++..+|++|||+|+++..+..+. +++..+ .. ...|+++|+||+|+.... ..+++...+.
T Consensus 53 G~~----~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~ 127 (159)
T cd04150 53 GQD----KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM-SAAEVTDKLG 127 (159)
T ss_pred CCH----hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC-CHHHHHHHhC
Confidence 973 4556678889999999999999875433322 233333 22 357999999999986431 1122222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+ ..+......++++||+++
T Consensus 128 --~-~~~~~~~~~~~~~Sak~g 146 (159)
T cd04150 128 --L-HSLRNRNWYIQATCATSG 146 (159)
T ss_pred --c-cccCCCCEEEEEeeCCCC
Confidence 0 111123446788999998
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.49 E-value=4.9e-13 Score=132.65 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|++++.+. ....+|+. +....... .+ ..+.++||||.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~-~~~~~~~~-------------~~-----------~~~~i~D~~G~ 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIG-FNVETVEY-------------KN-----------VSFTVWDVGGQ 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcC-cceEEEEE-------------CC-----------EEEEEEECCCC
Confidence 489999999999999999999873 22223222 11111100 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+......++..+|++++|+|+.++.+..+. ..+..+. ..+.|+++|+||+|+... ...+++...+...
T Consensus 54 ~----~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~ 128 (158)
T cd00878 54 D----KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA-LSVSELIEKLGLE 128 (158)
T ss_pred h----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc-cCHHHHHHhhChh
Confidence 3 3455677788999999999999976433332 2333322 346899999999998754 2223333222211
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ......+++++||+++
T Consensus 129 ~---~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 129 K---ILGRRWHIQPCSAVTG 145 (158)
T ss_pred h---ccCCcEEEEEeeCCCC
Confidence 0 1223568999999987
No 121
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.49 E-value=4.5e-13 Score=133.39 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.+++..+.. ...||... +........ ..... ..+.++|||
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~----------~~~~i~D~~ 59 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLR----------QSDED----------VRLMLWDTA 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEc----------CCCCE----------EEEEEeeCC
Confidence 379999999999999999999876542 33333321 110000000 00111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
|. +++......+++.+|++++|+|.+++.+..... ++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 60 G~----~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~---- 131 (162)
T cd04106 60 GQ----EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA---- 131 (162)
T ss_pred ch----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHH----
Confidence 96 455667788899999999999998765544432 4444433 3679999999999875311 1112111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+ ..+++++||+.+
T Consensus 132 -~~~~~---~~~~~~~Sa~~~ 148 (162)
T cd04106 132 -LAKRL---QLPLFRTSVKDD 148 (162)
T ss_pred -HHHHc---CCeEEEEECCCC
Confidence 11222 358999999886
No 122
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.49 E-value=5.6e-13 Score=132.37 Aligned_cols=154 Identities=22% Similarity=0.249 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|.+|+|||||+|.|++..+.+.. .+++ .......+.. .+.. ..+.++|||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 57 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNI-------------GGKR---------IDLAIWDTA 57 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999988765432 2232 2221111110 0110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. .........++..+|++++|+|.+++.+.+... ++..+.. .+.|+++|+||+|+..... ..+++.+..
T Consensus 58 g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~- 132 (162)
T cd04123 58 GQ----ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYA- 132 (162)
T ss_pred ch----HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH-
Confidence 96 334456677789999999999998765544442 3344432 3579999999999874311 111111111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.. ...+++++|++++ .|++++.+.+.+.
T Consensus 133 ----~~---~~~~~~~~s~~~~---------------------------~gi~~~~~~l~~~ 160 (162)
T cd04123 133 ----KS---VGAKHFETSAKTG---------------------------KGIEELFLSLAKR 160 (162)
T ss_pred ----HH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHH
Confidence 11 2467899999886 6888888777654
No 123
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.48 E-value=8.8e-13 Score=132.13 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+.+..+.+ ...+|+. .+...... .++.. ..+.++|||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~ 59 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIE-------------VNGQK---------IKLQIWDTA 59 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCcccceeEEEEEEE-------------ECCEE---------EEEEEEECC
Confidence 689999999999999999999887643 2333332 11111000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +++......+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+..... ..++..+..
T Consensus 60 G~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~- 134 (166)
T cd04122 60 GQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA- 134 (166)
T ss_pred Cc----HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH-
Confidence 96 45566678889999999999999987655544 34444432 3568999999999865421 112222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++.+||+++
T Consensus 135 ---~~----~~~~~~e~Sa~~~ 149 (166)
T cd04122 135 ---DE----NGLLFLECSAKTG 149 (166)
T ss_pred ---HH----cCCEEEEEECCCC
Confidence 11 2468999999987
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=5.7e-13 Score=136.04 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=90.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.|.+..+.. ..||.. ++...... .+ ..+.++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~~~D 67 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ--HQPTQH-PTSEELAI-------------GN-----------IKFTTFD 67 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc--cCCccc-cceEEEEE-------------CC-----------EEEEEEE
Confidence 346899999999999999999999976532 233321 11111100 01 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. ........++..+|+++||+|++++.+..+. ..+..+. ..+.|+++|+||+|+... -..+++.+.
T Consensus 68 ~~G~~----~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~ 142 (184)
T smart00178 68 LGGHQ----QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYA 142 (184)
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHH
Confidence 99973 3455677889999999999999876432222 2333332 246899999999998643 112333332
Q ss_pred HHHHHHHh------hCCCCCeEEEecccch
Q 002437 517 VKENTMKL------LNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~------~~~~~~~v~~vSA~~~ 540 (921)
+. +... .+.....|+++||+++
T Consensus 143 l~--l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 143 LG--LTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred cC--CCcccccccccCCceeEEEEeecccC
Confidence 21 0010 0113457999999987
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=5.1e-13 Score=132.66 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=85.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||++.|....+. ...||.. ....... . .+ ..+.++||||.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~-~~~~~~~------------~-~~-----------~~~~i~Dt~G~ 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIG-FNVETVT------------Y-KN-----------LKFQVWDLGGQ 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccC-cCeEEEE------------E-CC-----------EEEEEEECCCC
Confidence 4889999999999999999776543 2233321 1111000 0 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+...+..++..+|++|+|+|++++.+... ..+...++. .+.|+++|+||+|+.... ...++...+..
T Consensus 54 ~----~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~- 127 (158)
T cd04151 54 T----SIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGL- 127 (158)
T ss_pred H----HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCc-
Confidence 3 344567788999999999999987533221 222222222 468999999999987432 11222221110
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
........+++++||+++
T Consensus 128 --~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 128 --SELKDRTWSIFKTSAIKG 145 (158)
T ss_pred --cccCCCcEEEEEeeccCC
Confidence 011112357999999987
No 126
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.48 E-value=6.7e-13 Score=135.38 Aligned_cols=162 Identities=18% Similarity=0.215 Sum_probs=101.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||++++.+..+.. ..||+. ......... .++.- ..+.++||
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~------------~~~~~---------~~l~l~Dt 59 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSL------------GNSKG---------ITFHFWDV 59 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeec------------cCCCc---------eEEEEEEC
Confidence 4789999999999999999999876542 234332 111111110 01000 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. +.+...+..++..+|++|+|+|++++.+..+.. ++..+ ...+.|+++|+||+|+.... ..+++...+
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~ 134 (183)
T cd04152 60 GGQ----EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-SVSEVEKLL 134 (183)
T ss_pred CCc----HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-CHHHHHHHh
Confidence 996 344556778889999999999998764333321 23222 23568999999999986421 112221111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.........+++++||+.+ .|++++...|.+.+.
T Consensus 135 ~--~~~~~~~~~~~~~~~SA~~~---------------------------~gi~~l~~~l~~~l~ 170 (183)
T cd04152 135 A--LHELSASTPWHVQPACAIIG---------------------------EGLQEGLEKLYEMIL 170 (183)
T ss_pred C--ccccCCCCceEEEEeecccC---------------------------CCHHHHHHHHHHHHH
Confidence 1 11111112356899999987 688888888877664
No 127
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.48 E-value=8.5e-13 Score=157.22 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+.|+++|+.++|||||+|+|+|.+. .+... ...|.......+. .+++ +.+.|||
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~------------~~~g-----------~~i~~ID 57 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWP------------QPDG-----------RVLGFID 57 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEe------------cCCC-----------cEEEEEE
Confidence 3689999999999999999998542 11111 1222221111110 0111 2478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. +.+...+...+..+|++++|+|++.+...+..+.+..+...+.| +++|+||+|+.. ++.++.+.+.+.+.
T Consensus 58 tPGh----e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~ 132 (614)
T PRK10512 58 VPGH----EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAV 132 (614)
T ss_pred CCCH----HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHH
Confidence 9997 34444566667899999999999998888888888877777766 679999999974 34455555555554
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... +....+++++||+++
T Consensus 133 l~~~-~~~~~~ii~VSA~tG 151 (614)
T PRK10512 133 LREY-GFAEAKLFVTAATEG 151 (614)
T ss_pred HHhc-CCCCCcEEEEeCCCC
Confidence 4332 334578999999987
No 128
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.48 E-value=4.2e-13 Score=133.87 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+++..+.+ ...||+......... .+|.. ..+.|+||||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIE-------------VDSSP---------SVLEILDTAG 58 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 689999999999999999999876643 334444322111110 01110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. +...+...++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ...+.
T Consensus 59 ~~----~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~----- 129 (163)
T cd04176 59 TE----QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG----- 129 (163)
T ss_pred cc----cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-----
Confidence 63 3445677788999999999999876554443 34444433 4689999999999864311 11111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.... ..+++++||+++
T Consensus 130 ~~~~~~~---~~~~~~~Sa~~~ 148 (163)
T cd04176 130 RALAEEW---GCPFMETSAKSK 148 (163)
T ss_pred HHHHHHh---CCEEEEecCCCC
Confidence 1111212 357999999887
No 129
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=3.8e-13 Score=128.12 Aligned_cols=141 Identities=26% Similarity=0.342 Sum_probs=100.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|+++||||||+++|.|.+... .-|..+. |. =.+|||||-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i~---~~-----------------------------~~~IDTPGE 46 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAIE---YY-----------------------------DNTIDTPGE 46 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc----CccceeE---ec-----------------------------ccEEECChh
Confidence 69999999999999999999976421 1222211 11 245999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.--.+.+-........+||+|++|.|++.+...---.|.. ...+|+|-|+||+|+..++.+++...++++..
T Consensus 47 yiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a----- 118 (143)
T PF10662_consen 47 YIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFAS---MFNKPVIGVITKIDLPSDDANIERAKKWLKNA----- 118 (143)
T ss_pred heeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhc---ccCCCEEEEEECccCccchhhHHHHHHHHHHc-----
Confidence 5445555556666668999999999999764322222332 24589999999999996666666666665542
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
+.. .||.+|+.++ .|+++|.++|.+
T Consensus 119 G~~--~if~vS~~~~---------------------------eGi~eL~~~L~~ 143 (143)
T PF10662_consen 119 GVK--EIFEVSAVTG---------------------------EGIEELKDYLEE 143 (143)
T ss_pred CCC--CeEEEECCCC---------------------------cCHHHHHHHHhC
Confidence 433 5799999887 799999998864
No 130
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=5.2e-13 Score=152.96 Aligned_cols=168 Identities=20% Similarity=0.120 Sum_probs=104.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|++++|||||+|+|++......+.... ... ..+....+..+......... .+.. --..+.|+|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--~~~---~~d~~~~e~~rg~T~~~~~~--~~~~-~~~~~~~iD 81 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--KYD---EIDSAPEEKARGITINTAHV--EYET-ENRHYAHVD 81 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccc--ccc---cccCChhhhcCCEeEEccEE--EEcc-CCeEEEEEE
Confidence 456889999999999999999999753211100000 000 00000011111111111111 1110 013589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+...+..+.+..+...+.| +|+++||+|+...++..+.+.+.+...
T Consensus 82 tPGh~----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 82 CPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred CCChH----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99963 3444455667899999999999998888888888888888888 778999999985433344444555555
Q ss_pred HHHhhC-CCCCeEEEecccchH
Q 002437 521 TMKLLN-IENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~~~-~~~~~v~~vSA~~~l 541 (921)
+..... ....+++++||..+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcc
Confidence 554321 124789999999884
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.48 E-value=4.9e-13 Score=134.51 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=98.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||+|+|.+..+. ...||+. +....+.. .+ ..+.++||||.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~-~~~~~~~~-------------~~-----------~~i~l~Dt~G~ 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIG-FNVETVEY-------------KN-----------LKFTIWDVGGK 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCc-eeEEEEEE-------------CC-----------EEEEEEECCCC
Confidence 4789999999999999999987542 3444432 11111100 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +....+..++..+|+++||+|.+++.+..+. .++..+.. .+.|+++|+||+|+... ...+++...+.
T Consensus 54 ~----~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~-- 126 (169)
T cd04158 54 H----KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELLS-- 126 (169)
T ss_pred h----hcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHhC--
Confidence 3 3445677788999999999999876444333 33443322 24799999999998643 12222222211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...........++++||+++ .|++++..+|.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 127 LHKLCCGRSWYIQGCDARSG---------------------------MGLYEGLDWLSRQLVA 162 (169)
T ss_pred CccccCCCcEEEEeCcCCCC---------------------------CCHHHHHHHHHHHHhh
Confidence 11110111236788999987 6888888888766553
No 132
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.48 E-value=6e-13 Score=132.23 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=87.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+|.+.+.++.. ..||... +..+.. .+. ..+.++||||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~~~~~~~~~---------------~~~----------~~l~i~D~~G 53 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVGFNVEMLQL---------------EKH----------LSLTVWDVGG 53 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccCcceEEEEe---------------CCc----------eEEEEEECCC
Confidence 47899999999999999999987642 2333321 111110 011 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. .....+..++..+|++|||+|++++.+..+. .++..+ +. .+.|+++|+||+|+.... ..+++...+.
T Consensus 54 ~~----~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~- 127 (160)
T cd04156 54 QE----KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TAEEITRRFK- 127 (160)
T ss_pred CH----hHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CHHHHHHHcC-
Confidence 73 4445667788999999999999876543332 223332 21 468999999999986431 1122222111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+......+++++||+.+
T Consensus 128 -~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 128 -LKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred -CcccCCCCcEEEEecccccC
Confidence 11111112357999999987
No 133
>PRK12736 elongation factor Tu; Reviewed
Probab=99.48 E-value=9.5e-13 Score=150.11 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....++|+++|+.++|||||+++|++.... .+.... ......+....+..+......... .++. --+.+.||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~-~g~~~~----~~~~~~d~~~~E~~rg~T~~~~~~--~~~~-~~~~i~~i 80 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE-RGLNQA----KDYDSIDAAPEEKERGITINTAHV--EYET-EKRHYAHV 80 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh-hccccc----cchhhhcCCHHHHhcCccEEEEee--EecC-CCcEEEEE
Confidence 346789999999999999999999963210 000000 000000000111111111111000 0100 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ++...+...+..+|++++|+|+..+...+..+.+..+...+.| +|+|+||+|+..+++..+.+.+.+..
T Consensus 81 DtPGh~----~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 81 DCPGHA----DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 999953 3333345556789999999999988888888888888888887 67899999997543323334444554
Q ss_pred HHHHhhC-CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLN-IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~-~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+..... ....+++++||+.+.+. ...|. .+++.|.+.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~------------------~~~~~-~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEG------------------DPKWE-DAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccC------------------CCcch-hhHHHHHHHHHHhCC
Confidence 4443311 12478999999987321 12343 467788888877664
No 134
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.48 E-value=6.7e-13 Score=139.06 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=102.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+..+. ....||.. ++...... .+++.. ..+.|+|||
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~------------~~~~~~---------~~~~i~Dt~ 58 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVT------------LPGNLN---------VTLQVWDIG 58 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEE------------eCCCCE---------EEEEEEECC
Confidence 47999999999999999999987653 34444443 21111110 011100 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh------cCCeEEEEEeCCCCCCChHH-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ------WKKKVVFVLNKSDLYQNAFE-LEEAIS 515 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~------~~~~vivVlNK~D~~~~~~~-~~~v~~ 515 (921)
|. +....+...++..+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+...... .++..
T Consensus 59 G~----~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~- 133 (215)
T cd04109 59 GQ----SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA- 133 (215)
T ss_pred Cc----HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-
Confidence 96 345567788899999999999999876555543 4444443 23579999999999643111 11111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+...+ ..+++++||+++ .|++++.+.+...+.
T Consensus 134 ----~~~~~~---~~~~~~iSAktg---------------------------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 134 ----RFAQAN---GMESCLVSAKTG---------------------------DRVNLLFQQLAAELL 166 (215)
T ss_pred ----HHHHHc---CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 122222 357899999987 688888888876655
No 135
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=8.8e-13 Score=132.33 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=90.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||++.|++..+.+ +..++.. .+....+. ..+.. ..+.++|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~~~~~D 62 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVE-------------IKGEK---------IKLQIWD 62 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 34899999999999999999999766543 2223221 11111110 01110 1378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh---hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT---QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l---~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||. +........++..+|++++|+|.+++.+.... .++..+ ...+.|+++|+||+|+....+-..+ .
T Consensus 63 ~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~----~ 134 (169)
T cd04114 63 TAGQ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ----R 134 (169)
T ss_pred CCCc----HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH----H
Confidence 9996 34445567789999999999999865444333 234333 3346789999999998644211111 2
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+.+. ...+++.+||+++
T Consensus 135 ~~~~~~~---~~~~~~~~Sa~~~ 154 (169)
T cd04114 135 AEEFSDA---QDMYYLETSAKES 154 (169)
T ss_pred HHHHHHH---cCCeEEEeeCCCC
Confidence 2222222 2367999999987
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.47 E-value=1.1e-12 Score=130.63 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++..+. .+..+++........ ..++.- ..+.++||||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~---------~~~~i~D~~g 57 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKV-------------VLDGED---------VQLNILDTAG 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEE-------------EECCEE---------EEEEEEECCC
Confidence 47999999999999999999987654 344555433211110 011110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCC-hHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQN-AFELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~-~~~~~~v~~~~~ 518 (921)
.. .+......++..+|.+++|+|.+++.+.... .++..+. ..+.|+++|+||+|+... .....+.....
T Consensus 58 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~- 132 (164)
T cd04139 58 QE----DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA- 132 (164)
T ss_pred hh----hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-
Confidence 63 4455677788999999999998865433222 2223222 256899999999999752 11222222211
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. + ..+++++||+++ .|++++.+.+.+.+
T Consensus 133 ---~~-~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 161 (164)
T cd04139 133 ---RQ-W---GVPYVETSAKTR---------------------------QNVEKAFYDLVREI 161 (164)
T ss_pred ---HH-h---CCeEEEeeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 11 1 368999999987 78888888776654
No 137
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.47 E-value=1e-12 Score=131.22 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=91.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC-CCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~-~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+++|.+. ...+....||+..-....... ...+.. ..+.++||||
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~---------~~l~i~Dt~G 61 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVP-----------VDTDNT---------VELFIFDSAG 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEE-----------eCCCCE---------EEEEEEECCC
Confidence 7999999999999999999864 334455555553221111000 001110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
. +....+...++..+|++++|+|.+++.+..+. .++..+... +.|+++|+||+|+.... +.... .....
T Consensus 62 ~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~---~~~~~ 133 (164)
T cd04101 62 Q----ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA-EVTDA---QAQAF 133 (164)
T ss_pred H----HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCCHH---HHHHH
Confidence 5 44456678889999999999999876554433 355555443 58999999999986431 11110 00111
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++.+||+++
T Consensus 134 ~~~---~~~~~~~~Sa~~~ 149 (164)
T cd04101 134 AQA---NQLKFFKTSALRG 149 (164)
T ss_pred HHH---cCCeEEEEeCCCC
Confidence 111 1367999999887
No 138
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.47 E-value=8.8e-13 Score=133.89 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=102.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-IT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.++|+++|.+|+|||||+|.+.+..+.+ ...||... +. .+.+....... ....+.. ..+.||
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~i~ 68 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGG-----TLGRGQR---------IHLQLW 68 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccc-----cccCCCE---------EEEEEE
Confidence 4789999999999999999999876543 23333221 11 11111100000 0000110 148899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||||. ++....+..+++.+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+..... ..++..
T Consensus 69 Dt~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 69 DTAGQ----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred eCCCh----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 99996 45566788889999999999999876555544 34555543 2578999999999864311 111111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. +.... ..+++++||+.+ .|++++.+.+.+.+
T Consensus 145 ~-----~~~~~---~~~~~e~Sak~~---------------------------~~v~~l~~~l~~~~ 176 (180)
T cd04127 145 A-----LADKY---GIPYFETSAATG---------------------------TNVEKAVERLLDLV 176 (180)
T ss_pred H-----HHHHc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 1 11112 367999999987 57888777776544
No 139
>PRK00049 elongation factor Tu; Reviewed
Probab=99.47 E-value=1.2e-12 Score=149.13 Aligned_cols=192 Identities=20% Similarity=0.161 Sum_probs=115.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
....+|+++|+.++|||||+++|++..... +... ..... ..+....+..+.......... +.. --..++|+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~-g~~~-~~~~~---~~d~~~~E~~rg~Ti~~~~~~--~~~-~~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK-GGAE-AKAYD---QIDKAPEEKARGITINTAHVE--YET-EKRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhc-cCCc-ccchh---hccCChHHHhcCeEEeeeEEE--EcC-CCeEEEEEE
Confidence 456899999999999999999999742100 0000 00000 000001111111111111110 100 013589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+......+++..+...+.|.+ +++||+|+...++..+.+...+...
T Consensus 82 tPG~~----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 82 CPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred CCCHH----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 99973 344445566789999999999998888888888888888888876 6899999975433334444455554
Q ss_pred HHHhhC-CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLN-IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~-~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...-. ....+++++||+.+.+.. ....|. .|+..|.+.|.+++.
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~----------------~~~~w~-~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGD----------------DDEEWE-KKILELMDAVDSYIP 203 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCC----------------Cccccc-ccHHHHHHHHHhcCC
Confidence 443211 235789999999874310 112343 367788888877654
No 140
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.47 E-value=1.3e-12 Score=135.45 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=78.9
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~ 512 (921)
..+.||||||. +.+...+...+..+|++++|+|+..+ ........+..+...+ +|+++|+||+|+... .....
T Consensus 83 ~~i~~iDtPG~----~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~-~~~~~ 157 (203)
T cd01888 83 RHVSFVDCPGH----EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE-EQALE 157 (203)
T ss_pred cEEEEEECCCh----HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH-HHHHH
Confidence 46899999995 33444566667889999999999874 2333344455444434 479999999999743 33344
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+++.+... .....+++++||+++ .|+++|.+++.+.+..
T Consensus 158 ~~~~i~~~~~~~-~~~~~~i~~vSA~~g---------------------------~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGT-IAENAPIIPISAQLK---------------------------YNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhcc-ccCCCcEEEEeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 444444433322 123578999999987 6899999988876653
No 141
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=1.1e-12 Score=135.92 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=102.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.|++..+.. ...||... + ..+.+. .+.. ..+.+||
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~--------------~~~~---------~~l~l~D 56 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWD--------------PNTV---------VRLQLWD 56 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEEC--------------CCCE---------EEEEEEE
Confidence 479999999999999999999876532 33444321 1 111111 0110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh-------hcCCeEEEEEeCCCCCCCh-HHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ-------QWKKKVVFVLNKSDLYQNA-FELEE 512 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~-------~~~~~vivVlNK~D~~~~~-~~~~~ 512 (921)
|||. +.+..++..+++.+|++|+|+|.+++.+..+.. ++..+. ....|+++|.||+|+.... ...++
T Consensus 57 t~G~----~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 57 IAGQ----ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred CCCc----hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 9997 455667888999999999999998876655543 333332 2457999999999996321 11222
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+..+ . .+ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 133 ~~~~~~----~-~~--~~~~~e~Sak~~---------------------------~~v~e~f~~l~~~l~ 168 (201)
T cd04107 133 MDQFCK----E-NG--FIGWFETSAKEG---------------------------INIEEAMRFLVKNIL 168 (201)
T ss_pred HHHHHH----H-cC--CceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222221 1 11 257999999987 578887777776655
No 142
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.47 E-value=9.4e-13 Score=132.32 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.|....+. ...||+.. ....... .+ ..+.++||
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~-~~~~~~~-------------~~-----------~~~~l~Dt 60 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF-NVETVTY-------------KN-----------VKFNVWDV 60 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCccc-ceEEEEE-------------CC-----------EEEEEEEC
Confidence 4579999999999999999999876543 23444321 1111000 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. +....+..++..+|++|||+|++++.+..+. ..+..+ .. .+.|+++|.||+|+.... ..+++.+.+
T Consensus 61 ~G~~----~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~ 135 (168)
T cd04149 61 GGQD----KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKL 135 (168)
T ss_pred CCCH----HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHc
Confidence 9973 4455677889999999999999976544333 233333 22 357999999999986431 112222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. .. +.....+++++||+++
T Consensus 136 ~~--~~-~~~~~~~~~~~SAk~g 155 (168)
T cd04149 136 GL--TR-IRDRNWYVQPSCATSG 155 (168)
T ss_pred CC--Cc-cCCCcEEEEEeeCCCC
Confidence 10 00 1112246899999998
No 143
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.46 E-value=9.8e-13 Score=155.49 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=101.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++++|+++|++++|||||+|+|.+.++........|..+....+.. .++ +.++||||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~------------~~~-----------~~i~~iDT 142 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN------------EDG-----------KMITFLDT 142 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE------------CCC-----------cEEEEEEC
Confidence 5789999999999999999999998765443333343322211110 011 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH--
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN-- 520 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~-- 520 (921)
||.. .+..+....+..+|++++|+|++++...+..+.+..+...+.|+++++||+|+... +.+++...+...
T Consensus 143 PGhe----~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~--~~e~v~~~L~~~g~ 216 (587)
T TIGR00487 143 PGHE----AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA--NPDRVKQELSEYGL 216 (587)
T ss_pred CCCc----chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC--CHHHHHHHHHHhhh
Confidence 9974 33445567789999999999999887777777788777788999999999998643 123333333221
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
....++ ...+++++||+++
T Consensus 217 ~~~~~~-~~~~~v~iSAktG 235 (587)
T TIGR00487 217 VPEDWG-GDTIFVPVSALTG 235 (587)
T ss_pred hHHhcC-CCceEEEEECCCC
Confidence 111111 2368999999987
No 144
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.46 E-value=1.3e-12 Score=135.12 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=103.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||++.+.+..+.. ...||.. .+....+. .+|.. ..+.|||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~l~l~D 61 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVE-------------INGER---------VKLQIWD 61 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEE-------------ECCEE---------EEEEEEe
Confidence 46899999999999999999999887532 2333322 11111100 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||. +.+..+...++..+|++++|+|.+++.+..+. .++..+.. ...|+++|+||+|+..... ..++.....
T Consensus 62 ~~G~----~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~ 137 (199)
T cd04110 62 TAGQ----ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA 137 (199)
T ss_pred CCCc----hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 9996 34556778889999999999999876554443 35555543 2468999999999875311 112222111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ...++|.+||+.+ .|+.++.+.+...+.
T Consensus 138 -----~~---~~~~~~e~Sa~~~---------------------------~gi~~lf~~l~~~~~ 167 (199)
T cd04110 138 -----GQ---MGISLFETSAKEN---------------------------INVEEMFNCITELVL 167 (199)
T ss_pred -----HH---cCCEEEEEECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 11 2367999999987 578888887776654
No 145
>PRK12735 elongation factor Tu; Reviewed
Probab=99.46 E-value=1.3e-12 Score=148.96 Aligned_cols=193 Identities=20% Similarity=0.175 Sum_probs=112.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..+..+|+++|++++|||||+|+|++.... .+.. ........+....+..+......... .++. --..++|
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~-~g~~----~~~~~~~~d~~~~E~~rGiT~~~~~~--~~~~-~~~~i~~ 79 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK-KGGG----EAKAYDQIDNAPEEKARGITINTSHV--EYET-ANRHYAH 79 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhh-cCCc----ccchhhhccCChhHHhcCceEEEeee--EEcC-CCcEEEE
Confidence 3456789999999999999999999973110 0000 00000000000011111111000000 0000 0125899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+||||.. .+...+...+..+|++++|+|+..+...+..+++..+...+.|.+ +|+||+|+...++..+.+...+.
T Consensus 80 iDtPGh~----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 80 VDCPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred EECCCHH----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 9999963 343445566788999999999998777777778888877788855 67999999754322333333444
Q ss_pred HHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... +. ...+++++||..+.+.. ....|. .++..|.+.|.+.+.
T Consensus 156 ~~l~~~-~~~~~~~~ii~~Sa~~g~n~~----------------~~~~w~-~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 156 ELLSKY-DFPGDDTPIIRGSALKALEGD----------------DDEEWE-AKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHc-CCCcCceeEEecchhccccCC----------------CCCccc-ccHHHHHHHHHhcCC
Confidence 444332 21 24789999999884421 012343 467788888777654
No 146
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.46 E-value=1.2e-12 Score=132.28 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.|.+..+.. ..||.. .....+.. ++ ..+.++||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~l~D~ 66 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--TSPTIG-SNVEEIVY-------------KN-----------IRFLMWDI 66 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--cCCccc-cceEEEEE-------------CC-----------eEEEEEEC
Confidence 35789999999999999999998776542 233322 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .+...+..++..+|+++||+|++++.+..+. ..+..+ .. .+.|+++|+||+|+.... ..+++.+.+
T Consensus 67 ~G~~----~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l 141 (174)
T cd04153 67 GGQE----SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-TPAEISESL 141 (174)
T ss_pred CCCH----HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-CHHHHHHHh
Confidence 9973 4455667788999999999999876433222 233333 22 358999999999986431 122222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ........+++++||+++
T Consensus 142 ~~---~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 142 GL---TSIRDHTWHIQGCCALTG 161 (174)
T ss_pred Cc---ccccCCceEEEecccCCC
Confidence 10 001112357999999987
No 147
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.46 E-value=1.5e-12 Score=153.57 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+++.|+++|++|+|||||+|+|++..+.......+|..+-........... ........ .. +..+ ...+.||||
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~--~~~~~~~~-~~--v~~~-~~~l~~iDT 76 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEG--ICGDLLKK-FK--IRLK-IPGLLFIDT 76 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccc--cccccccc-cc--cccc-cCcEEEEEC
Confidence 467899999999999999999999876543333344322211111000000 00000000 00 0000 024899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
||.. .+..+...++..+|++++|+|++++.+.+..+.+..+...+.|+++|+||+|+..
T Consensus 77 pG~e----~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 77 PGHE----AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CCcH----hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 9973 3445566678999999999999987777777777777778899999999999974
No 148
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.46 E-value=1.6e-12 Score=130.64 Aligned_cols=144 Identities=20% Similarity=0.285 Sum_probs=90.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||++.+++..+.+.. .++.. .+...... .++.. ..+.|||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~---------~~l~i~D 60 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGVEFLNKDLE-------------VDGHF---------VTLQIWD 60 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc-CCceeeEEEEEEEE-------------ECCeE---------EEEEEEe
Confidence 4579999999999999999999987765432 22221 11110000 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||. ++...+...+++.+|++++|+|.+++.+..... ++..+.. .+.|+++|+||+|+.......+++
T Consensus 61 ~~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 136 (170)
T cd04116 61 TAGQ----ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEA 136 (170)
T ss_pred CCCh----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHH
Confidence 9996 455667788899999999999998765444432 3333221 346999999999986332122222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+... .+ ...+++++||+++
T Consensus 137 ~~~~~----~~---~~~~~~e~Sa~~~ 156 (170)
T cd04116 137 QAWCR----EN---GDYPYFETSAKDA 156 (170)
T ss_pred HHHHH----HC---CCCeEEEEECCCC
Confidence 22221 11 1257899999887
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.46 E-value=1.4e-12 Score=131.94 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|..|+|||||++.+....+. ...||+.. +..+.+. + ..+.++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~~~~~~~---------------~-----------~~l~l~D 63 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNVETVTYK---------------N-----------ISFTVWD 63 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccceEEEEEC---------------C-----------EEEEEEE
Confidence 4589999999999999999999755442 23444431 1111110 0 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh-h---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ-Q---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~-~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ..+..++..++..+|++|||+|.+++.+..+ .+++..+. . .+.|+++|+||+|+.... ..+++.+.
T Consensus 64 ~~G~----~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~ 138 (175)
T smart00177 64 VGGQ----DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-KAAEITEK 138 (175)
T ss_pred CCCC----hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-CHHHHHHH
Confidence 9997 3455678888999999999999987654333 23444432 2 347999999999986431 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.. .. .......++++||+++ .|+.++.++|.+.+
T Consensus 139 ~~~--~~-~~~~~~~~~~~Sa~~g---------------------------~gv~e~~~~l~~~~ 173 (175)
T smart00177 139 LGL--HS-IRDRNWYIQPTCATSG---------------------------DGLYEGLTWLSNNL 173 (175)
T ss_pred hCc--cc-cCCCcEEEEEeeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 110 00 1112345778999987 68888877776553
No 150
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.46 E-value=7.5e-13 Score=135.89 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=89.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|.|.+..+. ....||+........ ..++.. ..+.||||||.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~-------------~~~~~~---------~~l~i~Dt~G~ 57 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQV-------------VVDGQP---------CMLEVLDTAGQ 57 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEE-------------EECCEE---------EEEEEEECCCc
Confidence 4889999999999999999977653 234454432211000 001111 13789999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
+++......+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+...... ..+.
T Consensus 58 ----~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~---- 129 (190)
T cd04144 58 ----EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG---- 129 (190)
T ss_pred ----hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH----
Confidence 34555677889999999999999876655543 34444432 35799999999998643111 1111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+...+ ..+++.+||+++
T Consensus 130 -~~~~~~~---~~~~~e~SAk~~ 148 (190)
T cd04144 130 -AALARRL---GCEFIEASAKTN 148 (190)
T ss_pred -HHHHHHh---CCEEEEecCCCC
Confidence 1111222 357999999987
No 151
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.46 E-value=5.7e-13 Score=143.52 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=100.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|++|+|||||+|+|+...-............+...+. ..+..+..........+.+.. ..+++|||||.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~---~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFM---EQERERGITIQSAATTCFWKD---HRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCC---ccccCCCcCeeccEEEEEECC---EEEEEEECCCc
Confidence 489999999999999999974321111111011111111111 111222222222222222221 35899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.. +...+..++..+|++|+|+|+..+.......++..+...+.|+++++||+|+... +.+.+.+.+++.+...
T Consensus 75 ~d----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a--~~~~~~~~l~~~l~~~- 147 (270)
T cd01886 75 VD----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA--DFFRVVEQIREKLGAN- 147 (270)
T ss_pred HH----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHhCCC-
Confidence 43 3334677889999999999999888888888888888889999999999998753 2344555555544322
Q ss_pred CCCCCeEEEecccchH
Q 002437 526 NIENVTIYPVSARSTL 541 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l 541 (921)
..+.++|+|+...+
T Consensus 148 --~~~~~~Pisa~~~f 161 (270)
T cd01886 148 --PVPLQLPIGEEDDF 161 (270)
T ss_pred --ceEEEeccccCCCc
Confidence 34568999997654
No 152
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.45 E-value=7.7e-13 Score=133.89 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..|+|||||++.+....+ +....||+......... . ++.. ..+.||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVM------------I-GGEP---------YTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999998775 34555665321111110 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF---- 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~---- 516 (921)
.. ++..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+....+..+.....
T Consensus 59 ~~----~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~ 134 (175)
T cd01874 59 QE----DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP 134 (175)
T ss_pred cc----chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC
Confidence 73 3445666788999999999999987766655 25555543 357999999999986542211111000
Q ss_pred H-HHHHHHhhCC-CCCeEEEecccch
Q 002437 517 V-KENTMKLLNI-ENVTIYPVSARST 540 (921)
Q Consensus 517 ~-~~~~~~~~~~-~~~~v~~vSA~~~ 540 (921)
+ .+....+... ....+|.+||+++
T Consensus 135 v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 135 ITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred cCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 0 0111111111 2367999999987
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.45 E-value=7.1e-13 Score=132.92 Aligned_cols=155 Identities=22% Similarity=0.282 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.++...+. ....||.. .+....+.. ++.. ..+.++|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~Dt~ 57 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHT-------------NRGK---------IRFNVWDTA 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999866542 22233322 111111110 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|.. ........++..+|++|+|+|.+++.+.... .+++.+... +.|+++|.||+|+...... .+..+
T Consensus 58 G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~----- 127 (166)
T cd00877 58 GQE----KFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQIT----- 127 (166)
T ss_pred CCh----hhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC-HHHHH-----
Confidence 973 3334456678899999999999987665554 355555432 5899999999998733111 11111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. .....++|.+||+.+ .|+.++.+.+.+.+.
T Consensus 128 ~~---~~~~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 128 FH---RKKNLQYYEISAKSN---------------------------YNFEKPFLWLARKLL 159 (166)
T ss_pred HH---HHcCCEEEEEeCCCC---------------------------CChHHHHHHHHHHHH
Confidence 11 113478999999987 688888888876654
No 154
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.45 E-value=1.5e-12 Score=131.11 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=100.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||++++++..+. ....||...-.. ..+.. +|.. ..+.+|||||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~Dt~G 58 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEI-------------LGVP---------FSLQLWDTAG 58 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEE-------------CCEE---------EEEEEEeCCC
Confidence 6899999999999999999998653 344555432111 11100 1110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. +++..+...+++.+|++++|+|++++.+.... .++..+.+. ..|+++|.||+|+.... +..........
T Consensus 59 ~----~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~ 133 (170)
T cd04108 59 Q----ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-QYALMEQDAIK 133 (170)
T ss_pred h----HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc-cccccHHHHHH
Confidence 6 45566778889999999999999875444332 455554332 25689999999986431 11111111111
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..+++.+||+++ .|+.++.+.+.+.+.
T Consensus 134 -~~~~~---~~~~~e~Sa~~g---------------------------~~v~~lf~~l~~~~~ 165 (170)
T cd04108 134 -LAAEM---QAEYWSVSALSG---------------------------ENVREFFFRVAALTF 165 (170)
T ss_pred -HHHHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 357899999887 678888777766543
No 155
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=1.2e-12 Score=133.75 Aligned_cols=163 Identities=19% Similarity=0.236 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|.+|+|||||++.+++..+. ....||+........ ...++.. -.+.++||||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i------------~~~~~~~---------~~l~i~Dt~G 58 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNI------------QGPNGKI---------IELALWDTAG 58 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEE------------EecCCcE---------EEEEEEECCC
Confidence 37999999999999999999987753 333444321110000 0011111 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +++......++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.........+.......
T Consensus 59 ~----~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (187)
T cd04132 59 Q----EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES 134 (187)
T ss_pred c----hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHH
Confidence 6 344556667889999999999999876665542 4444432 3579999999999865321000011111111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+....+ ..+++.+||+++ .|+.++...+.+.+.
T Consensus 135 ~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 167 (187)
T cd04132 135 VAKKQG--AFAYLECSAKTM---------------------------ENVEEVFDTAIEEAL 167 (187)
T ss_pred HHHHcC--CcEEEEccCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111122 237899999987 678777777766554
No 156
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.45 E-value=1.6e-12 Score=131.17 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=93.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|..|+|||||++.+.+.++. ....||+......... .++.. ..+.|+|||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~ 58 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQAR-------------IDNEP---------ALLDILDTA 58 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEE-------------ECCEE---------EEEEEEeCC
Confidence 378999999999999999999987653 3344444321111100 01111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|. .+...+...++..+|++|+|+|.+++.+..... ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 59 G~----~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-- 132 (172)
T cd04141 59 GQ----AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN-- 132 (172)
T ss_pred Cc----hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH--
Confidence 96 345667888899999999999999887766654 3333332 3579999999999864310 1111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+. ...+++.+||+.+
T Consensus 133 ---~a~~---~~~~~~e~Sa~~~ 149 (172)
T cd04141 133 ---LARE---FNCPFFETSAALR 149 (172)
T ss_pred ---HHHH---hCCEEEEEecCCC
Confidence 1111 2468999999987
No 157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.45 E-value=9.7e-13 Score=132.16 Aligned_cols=147 Identities=21% Similarity=0.275 Sum_probs=89.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++.++. ....|+.......... . ++.. ..+.++||||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~------------~-~~~~---------~~l~~~D~~g 57 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVT------------V-DGKQ---------VNLGLWDTAG 57 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 47999999999999999999998763 2233333211111000 0 1110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHH-------HH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELE-------EA 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~-------~v 513 (921)
... .......+++.+|++++|+|.+++.+..+. .++..+... +.|+++|+||+|+........ .+
T Consensus 58 ~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v 133 (171)
T cd00157 58 QEE----YDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPI 133 (171)
T ss_pred ccc----ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCcc
Confidence 742 223444566899999999999876544332 355555433 489999999999976532211 01
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
............+ ..+++.+||+.+
T Consensus 134 ~~~~~~~~~~~~~--~~~~~~~Sa~~~ 158 (171)
T cd00157 134 TPEEGEKLAKEIG--AIGYMECSALTQ 158 (171)
T ss_pred CHHHHHHHHHHhC--CeEEEEeecCCC
Confidence 1111111222222 238999999887
No 158
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=4.1e-12 Score=134.91 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=110.5
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
....+++|+|+|.+|+|||||+|+|+|.....++ ..++|.....+.... +| ..+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-------------~g-----------~~i~ 82 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-------------DG-----------FKLN 82 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-------------CC-----------eEEE
Confidence 4557899999999999999999999999876544 335555544432211 11 2589
Q ss_pred EEeCCCCChhh--h----HHHHHHHHhcC--CCCEEEEEEeCCC-CCCHHHHHHHHHhhh-cC----CeEEEEEeCCCCC
Q 002437 439 IVDTPGTNVIL--Q----RQQRLTEEFVP--RADLVLFVISADR-PLTESEVVFLRYTQQ-WK----KKVVFVLNKSDLY 504 (921)
Q Consensus 439 lvDTPG~~~~~--~----~~~~~~~~~l~--~aD~il~V~da~~-~~t~~e~~~l~~l~~-~~----~~vivVlNK~D~~ 504 (921)
+|||||+++.. . .....+..++. ..|+++||...+. ..+..+..+++.+.+ .+ .++++|+||+|..
T Consensus 83 vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 83 IIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred EEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 99999997441 1 11222344553 6899999987764 467777888887765 23 5899999999997
Q ss_pred CChH---------HHHHHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCcccc
Q 002437 505 QNAF---------ELEEAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWR 566 (921)
Q Consensus 505 ~~~~---------~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 566 (921)
.+.. .....+..+.+....... ....||+.|+....-. .....+.-+|++..|.
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~--------~n~~~~~vlp~g~~w~ 228 (249)
T cd01853 163 PPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCR--------KNREGEKVLPNGTVWK 228 (249)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCccc--------CCCCCCeECCCCCccH
Confidence 5521 122334444443322221 2357888887754311 1122345677777774
No 159
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.44 E-value=2.1e-12 Score=130.23 Aligned_cols=146 Identities=20% Similarity=0.237 Sum_probs=89.8
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
.....++|+++|++|+|||||++.|.+..+.. ..|+.. +...... .++ ..+.+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~--~~~t~g-~~~~~i~-------------~~~-----------~~~~~ 62 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH--ITPTQG-FNIKTVQ-------------SDG-----------FKLNV 62 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc--cCCCCC-cceEEEE-------------ECC-----------EEEEE
Confidence 44567899999999999999999999975422 222221 1110000 011 24889
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|+.+..+..+. ..+..+ ...+.|+++++||+|+... ...+++.
T Consensus 63 ~D~~G~~----~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~i~ 137 (173)
T cd04155 63 WDIGGQR----AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA-APAEEIA 137 (173)
T ss_pred EECCCCH----HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC-CCHHHHH
Confidence 9999963 3445567788999999999999864332221 122222 2346899999999998643 2233333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+. +.. +.....+++++||+++
T Consensus 138 ~~l~--~~~-~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 138 EALN--LHD-LRDRTWHIQACSAKTG 160 (173)
T ss_pred HHcC--Ccc-cCCCeEEEEEeECCCC
Confidence 2221 111 1112346889999987
No 160
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=1.9e-12 Score=132.63 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|..|+|||||+|.+++..+.. ...||... ....... .++.. ..+.++|||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~~~i~Dt~ 57 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVY-------------IENKI---------IKLQIWDTN 57 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEE-------------ECCEE---------EEEEEEECC
Confidence 479999999999999999999887643 22333221 1111000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +.+......++..+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+..... ..+....
T Consensus 58 g~----~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~--- 130 (188)
T cd04125 58 GQ----ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKS--- 130 (188)
T ss_pred Cc----HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHH---
Confidence 96 345557788899999999999998765544432 4444443 3478999999999874311 1111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.... ..+++.+||+++
T Consensus 131 --~~~~~---~~~~~evSa~~~ 147 (188)
T cd04125 131 --FCDSL---NIPFFETSAKQS 147 (188)
T ss_pred --HHHHc---CCeEEEEeCCCC
Confidence 11112 357999999887
No 161
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.44 E-value=1.3e-12 Score=129.32 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|++++.. .+....|++.......+.. .+.. ..+.++|+||.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~g~ 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVV-------------DGET---------YTLDILDTAGQ 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEE-------------CCEE---------EEEEEEECCCh
Confidence 48999999999999999999877 4455566655322211111 0100 14789999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
. .+......++..+|++++|+|.+++.+..+. .++..+. ....|+++|+||+|+..... ..+++.....
T Consensus 58 ~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~- 132 (160)
T cd00876 58 E----EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK- 132 (160)
T ss_pred H----HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-
Confidence 3 3445566788899999999999876544443 2333332 24689999999999875311 1122222211
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++++|++.+
T Consensus 133 ---~----~~~~~~~~S~~~~ 146 (160)
T cd00876 133 ---E----WGCPFIETSAKDN 146 (160)
T ss_pred ---H----cCCcEEEeccCCC
Confidence 1 1268999999886
No 162
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.44 E-value=1.9e-12 Score=130.96 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+..+++..+. ....||.......... .++.. ..+.|+||||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVM-------------VDGKP---------VNLGLWDTAG 58 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 68999999999999999999987653 3445554321111110 01111 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF---- 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~---- 516 (921)
. +....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.......+.+...
T Consensus 59 ~----~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (174)
T cd01871 59 Q----EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 134 (174)
T ss_pred c----hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC
Confidence 6 34445667788999999999999987766664 24554443 257999999999986442222211110
Q ss_pred ----HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 ----VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ----~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
-...+...+ ...+++.+||+++
T Consensus 135 v~~~~~~~~~~~~--~~~~~~e~Sa~~~ 160 (174)
T cd01871 135 ITYPQGLAMAKEI--GAVKYLECSALTQ 160 (174)
T ss_pred CCHHHHHHHHHHc--CCcEEEEeccccc
Confidence 011111112 2248899999987
No 163
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.44 E-value=1.1e-12 Score=132.43 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=99.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+|+|.+|+|||||++.+.+..+. ....|+.......... . ++.. ..+.++||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVE------------V-DGKP---------VELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEE------------E-CCEE---------EEEEEEECCCCc
Confidence 579999999999999999997753 3333333211100000 0 1111 148899999973
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH--------
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI-------- 514 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~-------- 514 (921)
....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.......++..
T Consensus 58 ----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 133 (174)
T smart00174 58 ----DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVT 133 (174)
T ss_pred ----ccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCcc
Confidence 3334566678999999999999987655554 35565554 3689999999999975432221111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
......+....+ ..+++++||+++ .|++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~lf~~l~~~~ 171 (174)
T smart00174 134 YEQGEALAKRIG--AVKYLECSALTQ---------------------------EGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHHHcC--CcEEEEecCCCC---------------------------CCHHHHHHHHHHHh
Confidence 000111222222 247899999987 67888877776544
No 164
>PLN03110 Rab GTPase; Provisional
Probab=99.44 E-value=2.2e-12 Score=135.17 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||++.|++..+.. ...||.. .+...... .++.. ..+.|||
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~-------------~~~~~---------~~l~l~D 67 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQ-------------VEGKT---------VKAQIWD 67 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 45799999999999999999999887543 2223321 11111110 01111 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||. +++..++..+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+........+...
T Consensus 68 t~G~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~-- 141 (216)
T PLN03110 68 TAGQ----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQ-- 141 (216)
T ss_pred CCCc----HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHH--
Confidence 9996 45566788889999999999999877665554 35555543 35799999999998543111111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+... ...+++.+||+.+
T Consensus 142 --~l~~~---~~~~~~e~SA~~g 159 (216)
T PLN03110 142 --ALAEK---EGLSFLETSALEA 159 (216)
T ss_pred --HHHHH---cCCEEEEEeCCCC
Confidence 11122 2478999999987
No 165
>PLN03127 Elongation factor Tu; Provisional
Probab=99.44 E-value=2.5e-12 Score=147.89 Aligned_cols=168 Identities=20% Similarity=0.137 Sum_probs=99.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+++|+++|+.++|||||+++|++... ..+.. ..+.. ...+...++.++......+...+..+ -+.++|+|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~---~~~~~-~~~D~~~~E~~rGiTi~~~~~~~~~~---~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA---KAVAF-DEIDKAPEEKARGITIATAHVEYETA---KRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc---cceee-ccccCChhHhhcCceeeeeEEEEcCC---CeEEEEEE
Confidence 4678999999999999999999974310 00000 00000 00111111111221111111111111 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||+.. +...+...+..+|++++|+|+..+...++.+.+..+...+.| +|+++||+|+...++..+.+...+.+.
T Consensus 131 tPGh~~----f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 131 CPGHAD----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred CCCccc----hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 999843 222233445679999999999988888888888888888888 578999999985432233333344443
Q ss_pred HHHh-hCCCCCeEEEecccchH
Q 002437 521 TMKL-LNIENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~-~~~~~~~v~~vSA~~~l 541 (921)
+..+ +.....+++++|+..+.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~ 228 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSAL 228 (447)
T ss_pred HHHhCCCCCcceEEEeccceee
Confidence 3321 11235789999997663
No 166
>PTZ00369 Ras-like protein; Provisional
Probab=99.44 E-value=1.9e-12 Score=132.74 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||++.+.+..+. ....||+........ .. ++.. ..+.+|||
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~------------~~-~~~~---------~~l~i~Dt 60 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQC------------VI-DEET---------CLLDILDT 60 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEE------------EE-CCEE---------EEEEEEeC
Confidence 3589999999999999999999987653 233444322111000 00 1110 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.. +...+...++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+..... ...+....
T Consensus 61 ~G~~----~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~ 136 (189)
T PTZ00369 61 AGQE----EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL 136 (189)
T ss_pred CCCc----cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 9974 34456777889999999999998775544432 3444432 3569999999999854311 11111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+ ..+++.+||+++
T Consensus 137 -----~~~~---~~~~~e~Sak~~ 152 (189)
T PTZ00369 137 -----AKSF---GIPFLETSAKQR 152 (189)
T ss_pred -----HHHh---CCEEEEeeCCCC
Confidence 1111 367999999987
No 167
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=1.8e-12 Score=135.19 Aligned_cols=143 Identities=23% Similarity=0.281 Sum_probs=91.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|.|++.++.+. ..||+. .+...... ..++.. ..+.++||
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~------------~~~~~~---------~~l~i~Dt 59 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIE------------IEPGVR---------IKLQLWDT 59 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEE------------ECCCCE---------EEEEEEeC
Confidence 37899999999999999999998876433 223322 11110000 011111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHH-HHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFE-LEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~-~~~v~~~ 516 (921)
||. +.+......+++.+|++|+|+|.+++.+..+. +++..+.. ...|+++|.||+|+...... .++. .
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~- 133 (211)
T cd04111 60 AGQ----ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-E- 133 (211)
T ss_pred Ccc----hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-H-
Confidence 996 44556678889999999999999987555544 34444432 34678999999998753111 1111 1
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ..+++.+||+++
T Consensus 134 ---~~~~~~---~~~~~e~Sak~g 151 (211)
T cd04111 134 ---KLAKDL---GMKYIETSARTG 151 (211)
T ss_pred ---HHHHHh---CCEEEEEeCCCC
Confidence 122222 368999999987
No 168
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.44 E-value=2.6e-12 Score=130.88 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.+....+. ...||+. ........ .+ ..+.++||
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~-~~~~~~~~-------------~~-----------~~~~l~D~ 68 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIG-FNVETVEY-------------KN-----------LKFTMWDV 68 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccc-cceEEEEE-------------CC-----------EEEEEEEC
Confidence 4589999999999999999999765543 2334433 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. +.....+..++..+|++|||+|++++.+..+. ..+..+ .. ...|+++|+||.|+.... ..+++...+
T Consensus 69 ~G~----~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~l 143 (182)
T PTZ00133 69 GGQ----DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-STTEVTEKL 143 (182)
T ss_pred CCC----HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-CHHHHHHHh
Confidence 997 34556788899999999999999865433332 223332 22 357999999999986431 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .........++.+||+++ .|++++.++|.+.+.
T Consensus 144 ~~---~~~~~~~~~~~~~Sa~tg---------------------------~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 144 GL---HSVRQRNWYIQGCCATTA---------------------------QGLYEGLDWLSANIK 178 (182)
T ss_pred CC---CcccCCcEEEEeeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 10 011112235678899987 788888888876554
No 169
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.43 E-value=2.4e-12 Score=134.53 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+++.++.. ..||+.. ...... .+. ..+.||||||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~-~~~~~~--------------~~~----------~~l~iwDt~G 53 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGG-AFYLKQ--------------WGP----------YNISIWDTAG 53 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccce-EEEEEE--------------eeE----------EEEEEEeCCC
Confidence 378999999999999999999987642 3344322 111000 000 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~ 505 (921)
.. .+..+...+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+|+|.||+|+..
T Consensus 54 ~e----~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 54 RE----QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred cc----cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 73 44556778899999999999999876666653 3433332 3478999999999875
No 170
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.43 E-value=3.5e-12 Score=129.82 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=100.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..++|||||++.+....+. ...||+. +....... .+ ..+.++||
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g-~~~~~~~~-------------~~-----------~~~~i~D~ 68 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG-FNVETVEY-------------KN-----------ISFTVWDV 68 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 4589999999999999999999865543 2344433 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. ++....+..++..+|++|||+|++++.+..+. ..+..+ .. ...|+++|+||+|+.... ..+++.+.+
T Consensus 69 ~Gq----~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~l 143 (181)
T PLN00223 69 GGQ----DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKL 143 (181)
T ss_pred CCC----HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CHHHHHHHh
Confidence 996 45566788899999999999999876543332 233333 21 357999999999986542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.. +......++++||+++ .|+.++.++|.+.+.
T Consensus 144 ~--l~~-~~~~~~~~~~~Sa~~g---------------------------~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 144 G--LHS-LRQRHWYIQSTCATSG---------------------------EGLYEGLDWLSNNIA 178 (181)
T ss_pred C--ccc-cCCCceEEEeccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 000 0111234667899998 688888888876654
No 171
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.43 E-value=1.4e-12 Score=157.39 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+++.|+|+|..++|||||+++|.+.++........|..+..+.+ .++. ..++|||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v---------------------~~~~---~~ItfiD 343 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV---------------------ETNG---GKITFLD 343 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE---------------------EECC---EEEEEEE
Confidence 468999999999999999999999877643322222222211111 1110 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||... +..+....+..+|++|+|+|++++...+..+.+..+...+.|+|+|+||+|+... +.+.+...+...
T Consensus 344 TPGhe~----F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a--~~e~V~~eL~~~~ 417 (787)
T PRK05306 344 TPGHEA----FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA--NPDRVKQELSEYG 417 (787)
T ss_pred CCCCcc----chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc--CHHHHHHHHHHhc
Confidence 999753 3345566778899999999999887777777788888888999999999999643 223333332221
Q ss_pred -HHHhhCCCCCeEEEecccch
Q 002437 521 -TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 -~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...++ ...+++++||+++
T Consensus 418 ~~~e~~g-~~vp~vpvSAktG 437 (787)
T PRK05306 418 LVPEEWG-GDTIFVPVSAKTG 437 (787)
T ss_pred ccHHHhC-CCceEEEEeCCCC
Confidence 111111 2478999999987
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.43 E-value=1.9e-12 Score=155.00 Aligned_cols=152 Identities=16% Similarity=0.280 Sum_probs=101.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+++.|+|+|++++|||||+++|.+..+........|..+..+..... ....+ ..++|||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~---------~~~~~-----------~kItfiD 301 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE---------YKDEN-----------QKIVFLD 301 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE---------ecCCc-----------eEEEEEE
Confidence 367899999999999999999999876643222222322211111000 00001 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||. ..+..++..++..+|++|+|+|++++...+..+.+..+...+.|+|+|+||+|+... ..+++...+...
T Consensus 302 TPGh----e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~--~~e~v~~eL~~~~ 375 (742)
T CHL00189 302 TPGH----EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA--NTERIKQQLAKYN 375 (742)
T ss_pred CCcH----HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc--CHHHHHHHHHHhc
Confidence 9996 345556677889999999999999887777777788888888999999999998743 223333333221
Q ss_pred -HHHhhCCCCCeEEEecccch
Q 002437 521 -TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 -~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...++ ...+++++||+++
T Consensus 376 ll~e~~g-~~vpvv~VSAktG 395 (742)
T CHL00189 376 LIPEKWG-GDTPMIPISASQG 395 (742)
T ss_pred cchHhhC-CCceEEEEECCCC
Confidence 111111 2468999999987
No 173
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.43 E-value=2.3e-12 Score=129.43 Aligned_cols=141 Identities=27% Similarity=0.299 Sum_probs=89.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|.|.+. .+....||... ....... .+ ..+.++||||.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~~~~t~g~-~~~~~~~-------------~~-----------~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKKVAPTVGF-TPTKLRL-------------DK-----------YEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCccccCcccc-eEEEEEE-------------CC-----------EEEEEEECCCc
Confidence 4789999999999999999987 23333444321 1111100 01 14899999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
..+..++..++..+|++|||+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++.+...
T Consensus 54 ----~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~-- 126 (167)
T cd04161 54 ----ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL-LGADVIEYLS-- 126 (167)
T ss_pred ----HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC-CHHHHHHhcC--
Confidence 34556778899999999999999876544443 34554432 468999999999987542 1222322211
Q ss_pred HHHhhCC--CCCeEEEecccch
Q 002437 521 TMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~--~~~~v~~vSA~~~ 540 (921)
+..+... ....++++||+++
T Consensus 127 l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 127 LEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred cccccCCCCceEEEEEeEceeC
Confidence 1111111 2346888999886
No 174
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=1.4e-12 Score=131.25 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=101.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE---EEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+.++|+++|.+|+|||||++.+++..+.+....||+.... .+.+ +|.. ..+.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~---------------~~~~---------~~l~~ 58 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV---------------YGQE---------KYLIL 58 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE---------------CCeE---------EEEEE
Confidence 4689999999999999999999998765355666654211 1111 1111 14789
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cCCeEEEEEeCCCCCCChHH-HHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WKKKVVFVLNKSDLYQNAFE-LEEAISF 516 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~~~vivVlNK~D~~~~~~~-~~~v~~~ 516 (921)
+||+|.. ....+...++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+...... ..+.
T Consensus 59 ~d~~g~~----~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~--- 131 (169)
T cd01892 59 REVGEDE----VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQP--- 131 (169)
T ss_pred EecCCcc----cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCH---
Confidence 9999963 2234556677999999999999876443332 34444422 36899999999998643211 0111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.+.+.++. ..++++||+.+ .|+.++.+.+.+.+
T Consensus 132 --~~~~~~~~~--~~~~~~Sa~~~---------------------------~~v~~lf~~l~~~~ 165 (169)
T cd01892 132 --DEFCRKLGL--PPPLHFSSKLG---------------------------DSSNELFTKLATAA 165 (169)
T ss_pred --HHHHHHcCC--CCCEEEEeccC---------------------------ccHHHHHHHHHHHh
Confidence 112222332 24689999887 57888777776554
No 175
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.42 E-value=2.3e-12 Score=137.31 Aligned_cols=156 Identities=23% Similarity=0.338 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+++..+. ....||+..+....+.. +|.. ..+.||||||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i-------------~~~~---------~~l~I~Dt~G 57 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSI-------------RGEV---------YQLDILDTSG 57 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEE-------------CCEE---------EEEEEEECCC
Confidence 47999999999999999999987653 34556654322211110 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------------cCCeEEEEEeCCCCCCCh-HHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------------WKKKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------------~~~~vivVlNK~D~~~~~-~~~ 510 (921)
.. .+..+...++..+|++|+|+|.++..+.++. .++..+.. .+.|+|+|.||+|+.... ...
T Consensus 58 ~~----~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 58 NH----PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred Ch----hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 63 3334555677899999999999976655444 24444432 257999999999987421 112
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+++.+.+. . .....++++||+++ .|++++...|.+..
T Consensus 134 ~ei~~~~~----~---~~~~~~~evSAktg---------------------------~gI~elf~~L~~~~ 170 (247)
T cd04143 134 DEVEQLVG----G---DENCAYFEVSAKKN---------------------------SNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHH----h---cCCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 22222211 1 12467999999987 67888877777654
No 176
>PLN03126 Elongation factor Tu; Provisional
Probab=99.42 E-value=3.3e-12 Score=147.67 Aligned_cols=169 Identities=20% Similarity=0.128 Sum_probs=104.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+..+|+++|++++|||||+++|++......+..+.. +...+...++..+......+...+... -..++|||
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~-----~~~~D~~~~Er~rGiTi~~~~~~~~~~---~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK-----YDEIDAAPEERARGITINTATVEYETE---NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc-----cccccCChhHHhCCeeEEEEEEEEecC---CcEEEEEE
Confidence 4568899999999999999999996432111100000 000111111111111111111111111 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+...+..+.+..+...+.| +++++||+|+...++..+.+.+.+...
T Consensus 151 tPGh~----~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 151 CPGHA----DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred CCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 99963 3333455566789999999999988888888888888888887 788999999986433344444455555
Q ss_pred HHHh-hCCCCCeEEEecccchHH
Q 002437 521 TMKL-LNIENVTIYPVSARSTLE 542 (921)
Q Consensus 521 ~~~~-~~~~~~~v~~vSA~~~l~ 542 (921)
+... +.....+++++|+..+.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 5442 122368999999998743
No 177
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=2.4e-12 Score=135.16 Aligned_cols=169 Identities=19% Similarity=0.137 Sum_probs=94.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-----------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV-----------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL 434 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-----------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 434 (921)
+|+++|+.++|||||+++|+...-...... ..+ .+.+..+.+....+..+..........+.+..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~-~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKG-SFKYAWVLDTLKEERERGVTIDVGLAKFETEK--- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCc-chhHHhhhcCCHHHhhCccCeecceEEEeeCC---
Confidence 489999999999999999975321110000 000 00000011111111222222211222221211
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~ 506 (921)
..+.++||||... +...+...+..+|++|+|+|+..+ ...+....+..+...+ +|+++|+||+|+...
T Consensus 77 ~~i~liDtpG~~~----~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 77 YRFTILDAPGHRD----FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred eEEEEEECCChHH----HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 3589999999732 223355667889999999999874 2223334444444444 689999999999742
Q ss_pred ---hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccchHH
Q 002437 507 ---AFELEEAISFVKENTMKLL-NIENVTIYPVSARSTLE 542 (921)
Q Consensus 507 ---~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~l~ 542 (921)
+...+++.+.+...+...- .....+|+++||+++.+
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~g 192 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDN 192 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCC
Confidence 3445666666655554431 12357899999998843
No 178
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.42 E-value=3.4e-12 Score=131.80 Aligned_cols=142 Identities=16% Similarity=0.262 Sum_probs=92.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|..|+|||||++.+....+. ....+|.. .+...... .+|.. ..+.+|||+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~-------------~~~~~---------v~l~iwDtaG 58 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVE-------------LRGKK---------IRLQIWDTAG 58 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEE-------------ECCEE---------EEEEEEeCCC
Confidence 5889999999999999999987763 23334432 11110000 01111 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +++..++..|++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.... + +.......
T Consensus 59 q----e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~-~---v~~~~~~~ 130 (202)
T cd04120 59 Q----ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-E---ISRQQGEK 130 (202)
T ss_pred c----hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-c---cCHHHHHH
Confidence 7 456677889999999999999999877666653 4444433 357999999999986431 1 11111111
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.... ....+|.+||+++
T Consensus 131 ~a~~~--~~~~~~etSAktg 148 (202)
T cd04120 131 FAQQI--TGMRFCEASAKDN 148 (202)
T ss_pred HHHhc--CCCEEEEecCCCC
Confidence 11111 1367999999987
No 179
>PLN03118 Rab family protein; Provisional
Probab=99.42 E-value=3.8e-12 Score=132.97 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=101.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+++|++..+. ...|++.. .....+.. ++.. ..+.|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~D 68 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTV-------------GGKR---------LKLTIWD 68 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEE-------------CCEE---------EEEEEEE
Confidence 4589999999999999999999987653 33344322 11111100 1110 1479999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||. +++..+...+++.+|++|+|+|.+++.+..+.. +...+.. ...|+++|+||+|+..... ..++..
T Consensus 69 t~G~----~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 69 TAGQ----ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred CCCc----hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 9997 344556778889999999999999766555543 2222321 3468999999999864311 111111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . .. ...++|++||+.+ .|++++.+.+...+.
T Consensus 145 ~~----~-~~---~~~~~~e~SAk~~---------------------------~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 145 AL----A-KE---HGCLFLECSAKTR---------------------------ENVEQCFEELALKIM 177 (211)
T ss_pred HH----H-HH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 1 11 2367999999987 678888877776654
No 180
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.42 E-value=3.9e-13 Score=140.41 Aligned_cols=162 Identities=9% Similarity=-0.008 Sum_probs=119.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH---HHH-HHHHHHHHHHh-hc-CceEEecC---cHHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG---KSV-YEAACLLKSVV-KD-RALFLIAE---RVDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~---~~~-~~~a~~l~~~~-~~-~~~~ivnd---~~dla~~~~a~G--vHL~~~~ 168 (921)
++.+.++.+.++|+++||||.++... ..+ .+.++++++.| .. .+.+++|| +++.+.++|+|| ||.++.+
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~~ 92 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEATD 92 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccchh
Confidence 77889999999999999999987632 111 36788888887 44 57899996 899999999999 6777776
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEecCC--HHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcC----
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNVQT--LDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNV---- 234 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~h~--~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~---- 234 (921)
.+....+...+ .+ . .+|.+||. ..+..++ ...++||+.++|+ |+... ++. ...+++..
T Consensus 93 ~~~~~~~~~~~---~~-~---~~g~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~ 164 (211)
T cd00429 93 HLHRTIQLIKE---LG-M---KAGVALNPGTPVEVLEP-YLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENN 164 (211)
T ss_pred hHHHHHHHHHH---CC-C---eEEEEecCCCCHHHHHH-HHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence 66556665543 33 2 57777763 4444444 3556999999987 33221 122 24454444
Q ss_pred -CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 -KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 -~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++||++.++.++.
T Consensus 165 ~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 165 LNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred CCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 48999999999999999999999999999888764
No 181
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.42 E-value=3.9e-12 Score=126.90 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=90.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+++..+.+. ..||... ....... ..+.. ..+.++|||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~D~~ 57 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIE-------------VDGIK---------VRIQIWDTA 57 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEE-------------ECCEE---------EEEEEEeCC
Confidence 4799999999999999999998876533 3333321 1110000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|. ++.......++..+|++++|+|.+++.+..+. .+++.+.. ...|+++|.||+|+..... +......
T Consensus 58 g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~~~~~ 129 (161)
T cd04117 58 GQ----ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----VGDEQGN 129 (161)
T ss_pred Cc----HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHH
Confidence 96 34555677788999999999999876555544 34554443 3579999999999864311 1011111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ..+++++||+.+
T Consensus 130 ~~~~~~---~~~~~e~Sa~~~ 147 (161)
T cd04117 130 KLAKEY---GMDFFETSACTN 147 (161)
T ss_pred HHHHHc---CCEEEEEeCCCC
Confidence 222222 367999999987
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=3.3e-12 Score=151.94 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=100.1
Q ss_pred eCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhh
Q 002437 371 GEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQ 450 (921)
Q Consensus 371 G~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~ 450 (921)
|.+|+|||||+|+|+|.+....+...+|.+.....+.. ++ ..+.++||||+.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-------------~~-----------~~i~lvDtPG~~~~~~ 56 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-------------QG-----------EDIEIVDLPGIYSLTT 56 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-------------CC-----------eEEEEEECCCccccCc
Confidence 89999999999999998764444444554433222111 11 2489999999875432
Q ss_pred --HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 451 --RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 451 --~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
..+.....++ ..+|++++|+|+++. +....+..++.+.+.|+++|+||+|+.... ....- .+.+.+.+
T Consensus 57 ~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~-~i~~d----~~~L~~~l- 128 (591)
T TIGR00437 57 FSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKK-GIRID----EEKLEERL- 128 (591)
T ss_pred cchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhC-CChhh----HHHHHHHc-
Confidence 2334555554 479999999999863 345566667777889999999999985321 11111 12233333
Q ss_pred CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 527 IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 527 ~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.+++++||+++ .|++++.+.+.+..
T Consensus 129 --g~pvv~tSA~tg---------------------------~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 129 --GVPVVPTSATEG---------------------------RGIERLKDAIRKAI 154 (591)
T ss_pred --CCCEEEEECCCC---------------------------CCHHHHHHHHHHHh
Confidence 368999999987 68888888877653
No 183
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.41 E-value=3.3e-12 Score=130.99 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.|.+..+. ...||.. ++...+.. ++ ..+.++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~T~~-~~~~~i~~-------------~~-----------~~~~l~D 69 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVPTLH-PTSEELTI-------------GN-----------IKFKTFD 69 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCCccC-cceEEEEE-------------CC-----------EEEEEEE
Confidence 35689999999999999999999987653 2223221 11111100 01 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ......+..++..+|++++|+|..+..+..+ ...+..+. ..+.|+++|+||+|+... ...+++...
T Consensus 70 ~~G~----~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~~~~~ 144 (190)
T cd00879 70 LGGH----EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEELRQA 144 (190)
T ss_pred CCCC----HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHHHHHH
Confidence 9996 3344567788899999999999986533222 22333332 245899999999998643 122333332
Q ss_pred HHHHHHHhh----------CCCCCeEEEecccch
Q 002437 517 VKENTMKLL----------NIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~----------~~~~~~v~~vSA~~~ 540 (921)
+... ... .....+++++||+++
T Consensus 145 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 145 LGLY--GTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred hCcc--cccccccccccccCceeEEEEEeEecCC
Confidence 2210 000 012356899999987
No 184
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=5.6e-12 Score=131.63 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------cccccE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------ILKEMI 438 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~l~~l~ 438 (921)
+|+++|+.++|||||+++|+...-........+ ..+.+....+..+........+...++.. .-..+.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~-----~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ 76 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGK-----ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLIN 76 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCc-----eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEE
Confidence 699999999999999999986432111111001 11222222223333333222222222211 012488
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
||||||... +...+..++..+|++++|+|+..+.+.+...+++.+...+.|+++|+||+|+.
T Consensus 77 iiDTPG~~~----f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVD----FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccc----cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999843 34457788899999999999999888888888888777788999999999986
No 185
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.41 E-value=4.8e-12 Score=129.46 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=95.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|..++|||||+..+.+..+. ....|+.. ....... ...++.. -.+.++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~-~~~~~~~-----------i~~~~~~---------~~l~iwD 61 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMG-IDYKTTT-----------ILLDGRR---------VKLQLWD 61 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcce-eEEEEEE-----------EEECCEE---------EEEEEEe
Confidence 35689999999999999999999986543 22222211 1110000 0001111 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||. +++..++..+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||.|+..... ..++.....
T Consensus 62 t~G~----~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a 137 (189)
T cd04121 62 TSGQ----GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA 137 (189)
T ss_pred CCCc----HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH
Confidence 9997 456677888999999999999999887766654 5666654 3579999999999864210 112222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. ...++|.+||+++
T Consensus 138 ----~~----~~~~~~e~SAk~g 152 (189)
T cd04121 138 ----ER----NGMTFFEVSPLCN 152 (189)
T ss_pred ----HH----cCCEEEEecCCCC
Confidence 11 2468999999987
No 186
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.41 E-value=3e-12 Score=132.30 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=99.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.+++..+. ....+|+.......+.. .+.. ..+.|+||||.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D~~G~ 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEV-------------GGVS---------LTLDILDTSGS 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEE-------------CCEE---------EEEEEEECCCc
Confidence 4899999999999999999987754 23344443222111110 0100 14789999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+..+...++..+|++|+|+|.+++.+..+.. ++..+. ..+.|+++|+||+|+......... ....+.
T Consensus 58 ~----~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~--~~~~~~ 131 (198)
T cd04147 58 Y----SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA--KDALST 131 (198)
T ss_pred h----hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH--HHHHHH
Confidence 4 33445667889999999999998765555442 223332 256899999999998753111110 011111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ....+++++||+++ .|+.++.+.+.+.+.
T Consensus 132 ~~~---~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 132 VEL---DWNCGFVETSAKDN---------------------------ENVLEVFKELLRQAN 163 (198)
T ss_pred HHh---hcCCcEEEecCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 111 12357899999987 688888888876544
No 187
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.41 E-value=6.9e-12 Score=127.74 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE---EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|..++|||||++.+++..+. ....||...-. .+.. ++.. ..+.+||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~---------------~~~~---------~~l~iwD 55 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISI---------------RGTE---------ITFSIWD 55 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEE---------------CCEE---------EEEEEEe
Confidence 47999999999999999999987653 34555543211 1111 1111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh--HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA--FELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~--~~~~~v~~ 515 (921)
|+|. +++..+...+++.+|++++|+|.+++.+..+. +++..+.. ...| |+|.||+|+.... ++.+.+.+
T Consensus 56 t~G~----~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~ 130 (182)
T cd04128 56 LGGQ----REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITK 130 (182)
T ss_pred CCCc----hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHH
Confidence 9996 34456677889999999999999987665554 35555543 2345 6889999996421 11111222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+ +... .+.+++++||+++ .|++++.+.+.+.+.
T Consensus 131 ~~~~-~a~~---~~~~~~e~SAk~g---------------------------~~v~~lf~~l~~~l~ 166 (182)
T cd04128 131 QARK-YAKA---MKAPLIFCSTSHS---------------------------INVQKIFKIVLAKAF 166 (182)
T ss_pred HHHH-HHHH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222 2222 2368999999987 688888887776554
No 188
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.41 E-value=4.9e-12 Score=129.94 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..++|||||++.+....+. ....||......... .. ++.. -.+.+||||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~------------~~-~~~~---------~~l~i~Dt~ 59 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP-KEYIPTVFDNYSAQT------------AV-DGRT---------VSLNLWDTA 59 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC-cCCCCceEeeeEEEE------------EE-CCEE---------EEEEEEECC
Confidence 478999999999999999999987653 334444432111000 00 1111 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH---
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF--- 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~--- 516 (921)
|. +++..+...+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||.|+.......+.+.+.
T Consensus 60 G~----e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 60 GQ----EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred Cc----hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 97 455667778899999999999999877766653 4444443 357999999999996542222211110
Q ss_pred --HHHHHHHhhCCCC-CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 --VKENTMKLLNIEN-VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 --~~~~~~~~~~~~~-~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+....+..... .+++.+||+++ .|+.++...+.+.+..
T Consensus 136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g---------------------------~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 136 PITPQQGGALAKQIHAVKYLECSALNQ---------------------------DGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 0011111111122 57999999987 5777777777665543
No 189
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.41 E-value=4.2e-12 Score=145.06 Aligned_cols=168 Identities=18% Similarity=0.104 Sum_probs=98.5
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....++|+++|+.++|||||+++|++... ..+... .......+....+.++........ ..++. --+.+.||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~-~~g~~~----~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~-~~~~~~li 80 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA-KEGGAA----ARAYDQIDNAPEEKARGITINTAH--VEYET-ENRHYAHV 80 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH-Hhhccc----ccccccccCCHHHHhcCcceeeEE--EEEcC-CCEEEEEE
Confidence 34678999999999999999999985411 000000 000000000111111111111110 01110 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ++...+...+..+|++++|+|+..+...+..+.+..+...+.|.+ +|+||+|+...++..+.+.+.++.
T Consensus 81 DtpGh~----~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~ 156 (394)
T TIGR00485 81 DCPGHA----DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCchH----HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 999973 333334445578899999999998777777888888877777755 689999998543333334444544
Q ss_pred HHHHhhC-CCCCeEEEecccch
Q 002437 520 NTMKLLN-IENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~-~~~~~v~~vSA~~~ 540 (921)
.+...-. ....+++++||..+
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred HHHhcCCCccCccEEECccccc
Confidence 4443311 12378999999886
No 190
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.41 E-value=3.1e-12 Score=134.46 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=95.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.+++..+......|+.. .. ..+.+. +.. ..+.+||
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---------------~~~---------~~l~i~D 56 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD---------------GEE---------STLVVID 56 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC---------------CEE---------EEEEEEe
Confidence 47999999999999999999876653122222221 11 111111 100 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVP-RADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||.. ......++. .+|++++|+|++++.+.... +++..+.. .+.|+|+|.||+|+..... ..++.
T Consensus 57 t~G~~------~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~- 129 (221)
T cd04148 57 HWEQE------MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG- 129 (221)
T ss_pred CCCcc------hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-
Confidence 99975 112223445 89999999999976554433 34454443 3579999999999864411 01111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 130 ----~~~a~~---~~~~~~e~SA~~~---------------------------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 130 ----RACAVV---FDCKFIETSAGLQ---------------------------HNVDELLEGIVRQIR 163 (221)
T ss_pred ----HHHHHH---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111111 1357899999887 688888887776654
No 191
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.40 E-value=4.5e-12 Score=127.55 Aligned_cols=144 Identities=17% Similarity=0.287 Sum_probs=89.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||++.+++..+.. ...++.. ....... ...++.. ..+.++|||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~-~~~~~~~-----------~~~~~~~---------~~~~i~Dt~ 59 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIG-VDFRERT-----------VEIDGER---------IKVQLWDTA 59 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cccccee-EEEEEEE-----------EEECCeE---------EEEEEEeCC
Confidence 3789999999999999999999876532 2222221 1111000 0001110 148899999
Q ss_pred CCChhhhHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 444 GTNVILQRQQ-RLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|.. +.. .+...+++.+|++++|+|.+++.+..+.. ++..+.. ...|+++|.||+|+........+..
T Consensus 60 G~~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--- 132 (170)
T cd04115 60 GQE----RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA--- 132 (170)
T ss_pred ChH----HHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHH---
Confidence 963 222 35677889999999999999876655553 4444443 3479999999999864311111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+... ...+++.+||+.+
T Consensus 133 -~~~~~~---~~~~~~e~Sa~~~ 151 (170)
T cd04115 133 -QRFADA---HSMPLFETSAKDP 151 (170)
T ss_pred -HHHHHH---cCCcEEEEeccCC
Confidence 111121 2367999999984
No 192
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=8.8e-13 Score=144.51 Aligned_cols=240 Identities=18% Similarity=0.185 Sum_probs=162.2
Q ss_pred cccccchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 002437 265 EDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKA 344 (921)
Q Consensus 265 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~ 344 (921)
-.+.+|...+++.+ ++..+....+++.+..+..... ...++...+.+.++.-...+..+..+.++...+++.
T Consensus 73 ~~ihPfy~dL~~~l----y~~dhYk~aLgqv~~ak~lv~~----vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q 144 (620)
T KOG1490|consen 73 NDIHPFYADLLNIL----YDRDHYKIALGQVSTAKHLVEN----VARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQ 144 (620)
T ss_pred cccCcchHHHHHHH----hcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666655 5666667778888877776443 223444455566777788888899999999999999
Q ss_pred CccHHHHHHHHHHHhcCC----CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc
Q 002437 345 SPLMEEVSLLIDAVSQID----EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420 (921)
Q Consensus 345 ~~~~~~~~~l~~~~~~~~----~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~ 420 (921)
.+.++.+..+.+.+.++. +..++.++|.||+|||||+|-++..++-...+.+||..+-..++..
T Consensus 145 ~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy------------ 212 (620)
T KOG1490|consen 145 KSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY------------ 212 (620)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh------------
Confidence 988888888888777765 4578999999999999999999988877667777776543322110
Q ss_pred CCCeEEeecCCCcccccEEEeCCCCChhh-hHHHHH----HHHhcCCCCEEEEEEeCCCC--CC-HHHHHHHHHhhh--c
Q 002437 421 PDGQYICYLPSPILKEMIIVDTPGTNVIL-QRQQRL----TEEFVPRADLVLFVISADRP--LT-ESEVVFLRYTQQ--W 490 (921)
Q Consensus 421 ~~g~~~~~~p~~~l~~l~lvDTPG~~~~~-~~~~~~----~~~~l~~aD~il~V~da~~~--~t-~~e~~~l~~l~~--~ 490 (921)
.+ ..+.++||||+-+-. +....+ +.....---+|||++|.+.. .+ .++..+++.|+. .
T Consensus 213 ---kY---------lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa 280 (620)
T KOG1490|consen 213 ---KY---------LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA 280 (620)
T ss_pred ---he---------eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc
Confidence 01 147899999995331 211111 11111233479999998743 33 445678888886 5
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++|+|+|+||+|.... +++.+-.+.+-+.+. ....++|+..|+.+.
T Consensus 281 NK~~IlvlNK~D~m~~-edL~~~~~~ll~~~~---~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRP-EDLDQKNQELLQTII---DDGNVKVVQTSCVQE 326 (620)
T ss_pred CCceEEEeecccccCc-cccCHHHHHHHHHHH---hccCceEEEecccch
Confidence 6899999999999876 333333333333222 223478999998663
No 193
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.40 E-value=3.1e-12 Score=129.03 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+.+.++. ....|++.......... ++.. ..+.+|||||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~G 57 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTV-------------GGKQ---------YLLGLYDTAG 57 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEE-------------CCEE---------EEEEEEeCCC
Confidence 47999999999999999999988764 23344432211111100 1110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH------
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI------ 514 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~------ 514 (921)
... .......++..+|++|+|+|..++.+..+. .++..+.. .+.|+++|+||+|+.........+.
T Consensus 58 ~~~----~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (174)
T cd04135 58 QED----YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKP 133 (174)
T ss_pred ccc----ccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCC
Confidence 742 233455677899999999999877655444 24444433 4689999999999865432221110
Q ss_pred --HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 --SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 --~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
......+...++ ..+++.+||+++
T Consensus 134 v~~~~~~~~~~~~~--~~~~~e~Sa~~~ 159 (174)
T cd04135 134 VTVEQGQKLAKEIG--AHCYVECSALTQ 159 (174)
T ss_pred CCHHHHHHHHHHcC--CCEEEEecCCcC
Confidence 000111111122 246899999987
No 194
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.8e-12 Score=142.69 Aligned_cols=124 Identities=29% Similarity=0.364 Sum_probs=90.6
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
..++..+.|+++|+||+|||||+|+|..++...+++. .||++.....+.. +| ..+
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-------------~G-----------~~v 318 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-------------NG-----------VPV 318 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-------------CC-----------eEE
Confidence 3455679999999999999999999999987765555 4777655544432 22 258
Q ss_pred EEEeCCCCCh-----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh------------cCCeEEEEEeC
Q 002437 438 IIVDTPGTNV-----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ------------WKKKVVFVLNK 500 (921)
Q Consensus 438 ~lvDTPG~~~-----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~------------~~~~vivVlNK 500 (921)
.|+||.|+-. +....-...++.+..||+|++|+|+....+.++..+.+.+.. .+.|++++.||
T Consensus 319 ~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk 398 (531)
T KOG1191|consen 319 RLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANK 398 (531)
T ss_pred EEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEech
Confidence 9999999842 122234456777899999999999976666666654444422 23689999999
Q ss_pred CCCCCC
Q 002437 501 SDLYQN 506 (921)
Q Consensus 501 ~D~~~~ 506 (921)
+|+..+
T Consensus 399 ~D~~s~ 404 (531)
T KOG1191|consen 399 SDLVSK 404 (531)
T ss_pred hhccCc
Confidence 999865
No 195
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.39 E-value=4.5e-12 Score=129.99 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=101.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.+++..+. ....||......... ..++.. ..+.|+||||.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i-------------~~~~~~---------~~l~i~Dt~G~ 58 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDI-------------FVDGLH---------IELSLWDTAGQ 58 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEE-------------EECCEE---------EEEEEEECCCC
Confidence 6899999999999999999987653 223343321110000 001110 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH-----
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF----- 516 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~----- 516 (921)
. .+..+...++..+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+....+. .+....
T Consensus 59 ~----~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~-~~~~~~~~~~~ 133 (189)
T cd04134 59 E----EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNE-RDDLQRYGKHT 133 (189)
T ss_pred h----hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhh-HHHHhhccCCC
Confidence 3 3344556678999999999999987666544 35666654 35799999999999754221 111000
Q ss_pred -HHHHHHHhh-CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 -VKENTMKLL-NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 -~~~~~~~~~-~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+. .....+++.+||+++ .|++++...+.+.+.
T Consensus 134 v~~~~~~~~~~~~~~~~~~e~SAk~~---------------------------~~v~e~f~~l~~~~~ 174 (189)
T cd04134 134 ISYEEGLAVAKRINALRYLECSAKLN---------------------------RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCcC---------------------------CCHHHHHHHHHHHHh
Confidence 000111111 112367999999987 688888777776655
No 196
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.39 E-value=7.4e-12 Score=126.42 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=89.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+.+..+. ....||.......... . ++.. ..+.++||||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIE------------V-DGKQ---------VELALWDTAG 58 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 57999999999999999999987653 2334443221111110 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHH-----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAIS----- 515 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~----- 515 (921)
.. ........++..+|++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.......+++..
T Consensus 59 ~~----~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~ 134 (175)
T cd01870 59 QE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 134 (175)
T ss_pred ch----hhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCC
Confidence 73 3334444577899999999999876544333 24444443 36799999999998754222221110
Q ss_pred ---HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 ---FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ---~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+...+ ...+++++||+.+
T Consensus 135 v~~~~~~~~~~~~--~~~~~~~~Sa~~~ 160 (175)
T cd01870 135 VKPEEGRDMANKI--GAFGYMECSAKTK 160 (175)
T ss_pred ccHHHHHHHHHHc--CCcEEEEeccccC
Confidence 0001111111 2347999999987
No 197
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.39 E-value=6.6e-12 Score=131.80 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=92.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|..|+|||||++.++..++. ....||... +....+.. ..+. -.+.+||
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~tig~~~~~~~~~~------------~~~~----------~~l~i~D 68 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFT------------NCGK----------IRFYCWD 68 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCC-CccCCccceeEEEEEEEE------------CCeE----------EEEEEEE
Confidence 5689999999999999999998876543 233444321 11111110 0111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||.. .+..+...+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+.......+++ ..
T Consensus 69 t~G~~----~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~-- 141 (219)
T PLN03071 69 TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF-- 141 (219)
T ss_pred CCCch----hhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HH--
Confidence 99973 4456677789999999999999987655544 35555543 357999999999985331111111 11
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....++|.+||+++
T Consensus 142 ---~~---~~~~~~~e~SAk~~ 157 (219)
T PLN03071 142 ---HR---KKNLQYYEISAKSN 157 (219)
T ss_pred ---HH---hcCCEEEEcCCCCC
Confidence 11 13467999999987
No 198
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.39 E-value=1.6e-12 Score=138.71 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=130.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGL--- 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l--- 169 (921)
++++.++.+.+.|++.+|+|+++.....+...+..++++|+. +.+++++ ++++.+...||++||+|...+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~ 112 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENP 112 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhCh
Confidence 677899999999999999999998877778889999999999 8999994 347788899999999999776
Q ss_pred -CHHHHHHhcccCCCCccccCeEEEecC---------------CHHH-HHcccccCCCCEEEeCCCC----CCCCCcc-h
Q 002437 170 -PAIVARNTMKDSMSESVVLPLVGRNVQ---------------TLDA-AFNASSSEGADFLVCCFGE----GQKADVI-E 227 (921)
Q Consensus 170 -~~~~~r~~~~~~~~~~~~~~~ig~S~h---------------~~~e-~~~A~~~~gaDyv~~gpvT----k~~~g~~-~ 227 (921)
....++..+| ++ ++ +++.+++ ++.+ ++.+ ...|+|.+++-+++ ...++.. .
T Consensus 113 ~~~~~i~~~~g---~~-~i--~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~G~~~i~~~~~~~~g~~~g~~~~~i 185 (241)
T PRK13585 113 EIVRELSEEFG---SE-RV--MVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF-EELGAGSILFTNVDVEGLLEGVNTEPV 185 (241)
T ss_pred HHHHHHHHHhC---CC-cE--EEEEEeeCCEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEEeecCCCCcCCCCHHHH
Confidence 3455566554 44 43 4677775 4444 5555 78999999987762 2233343 5
Q ss_pred hhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.+++||++.|||. ++++..+..+|++||++.++.+..
T Consensus 186 ~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 186 KELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 788888899999999998 899999999999999998888765
No 199
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.39 E-value=5.1e-12 Score=126.89 Aligned_cols=142 Identities=23% Similarity=0.311 Sum_probs=89.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++++.+..+. ....|++......... . ++.. ..+.+|||||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 58 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVE------------I-DGRQ---------CDLEILDTAG 58 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 68999999999999999999987653 3344444322110000 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHH-HHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFE-LEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~-~~~v~~~~~ 518 (921)
.. .+..+...++..+|.+++|+|.+++.+..... +...+. ..+.|+++|.||+|+...... .++...
T Consensus 59 ~~----~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~--- 131 (168)
T cd04177 59 TE----QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS--- 131 (168)
T ss_pred cc----cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH---
Confidence 73 44556777889999999999998764443332 333332 346899999999998654211 111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+..+ ..+++++||+.+
T Consensus 132 --~~~~~~--~~~~~~~SA~~~ 149 (168)
T cd04177 132 --LSQQWG--NVPFYETSARKR 149 (168)
T ss_pred --HHHHcC--CceEEEeeCCCC
Confidence 111111 368999999887
No 200
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.38 E-value=2.1e-12 Score=129.15 Aligned_cols=141 Identities=23% Similarity=0.291 Sum_probs=86.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++++++..+. ....|++......... .++.. -.+.+|||||.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~~~i~D~~g~ 57 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLYSRQVT-------------IDGEQ---------VSLEILDTAGQ 57 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhceEEEE-------------ECCEE---------EEEEEEECCCC
Confidence 4899999999999999999976553 3344444221111110 01111 13789999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
... .......+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 58 ~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~--- 131 (165)
T cd04146 58 QQA---DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK--- 131 (165)
T ss_pred ccc---ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH---
Confidence 521 1123556778999999999999875555432 3333332 3689999999999853210 1111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+ ..+++.+||+.+
T Consensus 132 --~~~~~---~~~~~e~Sa~~~ 148 (165)
T cd04146 132 --LASEL---GCLFFEVSAAED 148 (165)
T ss_pred --HHHHc---CCEEEEeCCCCC
Confidence 11222 357999999876
No 201
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.38 E-value=4.4e-12 Score=153.39 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=103.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCcc-ceeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...++|+++|++++|||||+|+|+...-.... ...+| ..+.+..+.+...++..+......+...+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 35678999999999999999999976432221 12233 2222212222222233333333322222222
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-h
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN-A 507 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~-~ 507 (921)
+. ..++|+||||... +...+...+..+|++++|+|+..+.+.+..+.+..+...+ +++|+|+||+|+... +
T Consensus 102 ~~---~~~~liDtPG~~~----f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 102 PK---RKFIVADTPGHEQ----YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred CC---ceEEEEECCChHH----HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh
Confidence 11 3589999999632 2233444578999999999998877655555555555444 678999999999752 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+.++++...+...+.. ++....+++++||+.+.
T Consensus 175 ~~~~~i~~~i~~~~~~-~~~~~~~iipiSA~~g~ 207 (632)
T PRK05506 175 EVFDEIVADYRAFAAK-LGLHDVTFIPISALKGD 207 (632)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCccEEEEecccCC
Confidence 3344444444433332 24445789999999873
No 202
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.38 E-value=5.9e-12 Score=125.99 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=90.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|.+|+|||||++.+.+..+ +....||... ...... .+. ..+.+|||||..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~-~~~~i~--------------~~~----------~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGF-NSVAIP--------------TQD----------AIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCc-ceEEEe--------------eCC----------eEEEEEECCCCc
Confidence 78999999999999999998754 2344455431 111110 000 148999999973
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh--hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ--QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~--~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
+...++..+++.+|++|||+|.+++.+..+. .++..+. ..+.|+++|.||+|+... ....++.... .+..
T Consensus 56 ----~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~--~~~~ 128 (164)
T cd04162 56 ----NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA-RSVQEIHKEL--ELEP 128 (164)
T ss_pred ----chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC-CCHHHHHHHh--CChh
Confidence 4456677889999999999999876543322 3444443 256899999999998643 1222222221 1122
Q ss_pred hhCCCCCeEEEecccch
Q 002437 524 LLNIENVTIYPVSARST 540 (921)
Q Consensus 524 ~~~~~~~~v~~vSA~~~ 540 (921)
+.......++.+||+..
T Consensus 129 ~~~~~~~~~~~~Sa~~~ 145 (164)
T cd04162 129 IARGRRWILQGTSLDDD 145 (164)
T ss_pred hcCCCceEEEEeeecCC
Confidence 22224567899999873
No 203
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.38 E-value=4.3e-12 Score=123.21 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=89.3
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
|+|.+|+|||||+|+|.+....+....++........+.... .. ..+.++||||....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------------~~----------~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------------KK----------VKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------------EE----------EEEEEEecCChHHH
Confidence 579999999999999999876433333333222222221100 00 25899999997432
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHH-----HHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL-----RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l-----~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
......++..+|++++|+|++++.+..+...+ ......+.|+++|+||+|........... ....
T Consensus 59 ----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~---~~~~--- 128 (157)
T cd00882 59 ----RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE---LAEQ--- 128 (157)
T ss_pred ----HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH---HHHH---
Confidence 23346678999999999999987665555432 23345678999999999997653221111 0111
Q ss_pred hhCCCCCeEEEecccch
Q 002437 524 LLNIENVTIYPVSARST 540 (921)
Q Consensus 524 ~~~~~~~~v~~vSA~~~ 540 (921)
.......+++++|++.+
T Consensus 129 ~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 129 LAKELGVPYFETSAKTG 145 (157)
T ss_pred HHhhcCCcEEEEecCCC
Confidence 11223578999999876
No 204
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.38 E-value=5.6e-12 Score=146.47 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=100.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCccc-eeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...++|+|+|++++|||||+++|+...-.... ...+|. .+.+-.+.+...++..+......+...+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 46789999999999999999999865422111 011221 111111222222333333332222111111
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-h
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN-A 507 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~-~ 507 (921)
+ -..+.||||||.. .+...+...+..+|++|+|+|+..+...+..+.+..+...+ +++|+|+||+|+... +
T Consensus 105 ~---~~~i~~iDTPGh~----~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 105 E---KRKFIIADTPGHE----QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred C---CcEEEEEECCCcH----HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh
Confidence 1 1358999999963 33233344468999999999998876554444333333333 578999999999743 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+.++++.+.+...+..+-.....+++++||+.+.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ 211 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGD 211 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Confidence 2344444444433332211335889999999873
No 205
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.38 E-value=5.3e-12 Score=128.22 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=87.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+++|.+|+|||||++.+++..+ +....|++.......+.. ++.- ..+.+|||||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D~~g 58 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRY-------------KGQD---------YHLEIVDTAG 58 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEE-------------CCEE---------EEEEEEECCC
Confidence 5799999999999999999998764 344555553221111100 0100 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. ++......+...+|++++|+|.++..+.+... ++..+ ...+.|+++|+||+|+..... ..++.. .
T Consensus 59 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~-~-- 131 (180)
T cd04137 59 QD----EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-E-- 131 (180)
T ss_pred hH----hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH-H--
Confidence 73 34445566788999999999998754433332 22333 234579999999999864311 111111 1
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... ...+++++||+.+
T Consensus 132 --~~~~---~~~~~~~~Sa~~~ 148 (180)
T cd04137 132 --LAES---WGAAFLESSAREN 148 (180)
T ss_pred --HHHH---cCCeEEEEeCCCC
Confidence 1111 2368999999886
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.38 E-value=3.9e-12 Score=147.05 Aligned_cols=168 Identities=19% Similarity=0.180 Sum_probs=96.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC------------CCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV------------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~------------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+|+++|++++|||||+|+|+...-..... ...+..... ..+...++..+......+...+.+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~--~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAW--VMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhh--hhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999654221110 000000000 0011111111111111111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC--CCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR--PLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN- 506 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~--~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~- 506 (921)
-..+.||||||... +...+...+..+|++|+|+|+++ +......+.+..+...+ +|+++|+||+|+...
T Consensus 83 ---~~~i~liDtpG~~~----~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 83 ---KYYFTIVDCPGHRD----FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYD 155 (425)
T ss_pred ---CeEEEEEECCCccc----chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 12589999999632 22223445678999999999987 55555555555555555 479999999999753
Q ss_pred hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 507 AFELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
.+..+.+.+.+.+.+... +. ...+++++||+.+
T Consensus 156 ~~~~~~~~~~i~~~l~~~-g~~~~~~~ii~iSA~~g 190 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMV-GYKPDDIPFIPVSAFEG 190 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCcCcceEEEeecccC
Confidence 233444455555444332 22 2468999999987
No 207
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.38 E-value=9.1e-12 Score=130.28 Aligned_cols=169 Identities=21% Similarity=0.201 Sum_probs=96.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccEEEeCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMIIVDTP 443 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~lvDTP 443 (921)
+|+++|+.++|||||+++|++.............. ...+.+....+..+............++. .....+.+||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~--~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWK--PLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCC--ceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999764332210000000 00111111111111111111111111110 001248999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC------Ch---HHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ------NA---FELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~------~~---~~~~~v~ 514 (921)
|... +...+..++..+|++|+|+|+.+..+.....++..+...+.|+++|+||+|+.. .. +.+.++.
T Consensus 80 G~~~----f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i 155 (213)
T cd04167 80 GHVN----FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHII 155 (213)
T ss_pred CCcc----hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHH
Confidence 9753 334567778899999999999988777666677776666799999999999862 11 2244444
Q ss_pred HHHHHHHHHhhC-------CCCCeEEEecccch
Q 002437 515 SFVKENTMKLLN-------IENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~-------~~~~~v~~vSA~~~ 540 (921)
+.+...+..... +....|++.|++.+
T Consensus 156 ~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~ 188 (213)
T cd04167 156 DEVNNIIASFSTTLSFLFSPENGNVCFASSKFG 188 (213)
T ss_pred HHHHHHHHHhcCCCceEeccCCCeEEEEecCCC
Confidence 555444443311 12234666677655
No 208
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.38 E-value=9.5e-12 Score=126.54 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=83.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..++|||||++.+.+..+. ....||.......... .++.. -.+.||||
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~-------------~~~~~---------~~l~iwDt 60 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFE-------------IDTQR---------IELSLWDT 60 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEE-------------ECCEE---------EEEEEEEC
Confidence 3578999999999999999999987653 3455554321111100 01111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~ 505 (921)
+|. +++..+...+++.+|++|+|+|.+++.+..+. .++..++.. ..|+++|.||+|+..
T Consensus 61 aG~----e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 61 SGS----PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred CCc----hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 996 45566777889999999999999988777664 466666543 479999999999864
No 209
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.38 E-value=4.2e-12 Score=128.17 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+.+..+. ....||+......... . ++.. ..+.+|||||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 57 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVL------------V-DGKP---------VRLQLCDTAG 57 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEE------------E-CCEE---------EEEEEEECCC
Confidence 47899999999999999999887653 3444444221111100 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
.. +.......++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+...
T Consensus 58 ~~----~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 58 QD----EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred Ch----hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 73 3344456678999999999999987665553 46666654 35799999999998754
No 210
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.38 E-value=1.2e-12 Score=136.50 Aligned_cols=145 Identities=21% Similarity=0.146 Sum_probs=96.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.||||||||+|+|...+-....+.+||-.+........+ . .++++-|.|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-------------f----------~q~tVADiP 252 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-------------F----------SQITVADIP 252 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-------------c----------ceeEeccCc
Confidence 35689999999999999999999987777888898776654222111 1 248999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADRPL---TESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+-... .-..-...+.+.+|+.++||+|.+.+. .-++.+ ++.++.. ..+|.++|+||+|+...++
T Consensus 253 GiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--- 329 (366)
T KOG1489|consen 253 GIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--- 329 (366)
T ss_pred cccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---
Confidence 984221 111223455678999999999999772 223333 2233322 3478999999999863322
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..++.+..+++ .+.|+++||+++
T Consensus 330 ~~l~~L~~~lq------~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 330 NLLSSLAKRLQ------NPHVVPVSAKSG 352 (366)
T ss_pred HHHHHHHHHcC------CCcEEEeeeccc
Confidence 22233333322 346999999987
No 211
>PLN03108 Rab family protein; Provisional
Probab=99.37 E-value=1e-11 Score=129.49 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=91.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|.|++.++.+.. .||.. .+. .+.. ++.. -.+.+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~---------------~~~~---------i~l~l 59 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITI---------------DNKP---------IKLQI 59 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEE---------------CCEE---------EEEEE
Confidence 4589999999999999999999988765432 22221 111 1111 1110 13789
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. ..+..++..++..+|++|+|+|.+++.+.... .++..+.. ...|+++|.||+|+..... ..++..
T Consensus 60 ~Dt~G~----~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 135 (210)
T PLN03108 60 WDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 135 (210)
T ss_pred EeCCCc----HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHH
Confidence 999996 34555677888999999999999877655544 34444432 3579999999999864311 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. .. ...+++.+||+++
T Consensus 136 ~~~----~~----~~~~~~e~Sa~~~ 153 (210)
T PLN03108 136 QFA----KE----HGLIFMEASAKTA 153 (210)
T ss_pred HHH----HH----cCCEEEEEeCCCC
Confidence 221 11 2367999999887
No 212
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=1.1e-11 Score=125.68 Aligned_cols=114 Identities=28% Similarity=0.352 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..++|||||++.+.+..+ +....||.......... . ++.. -.+.+|||||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~iwDt~G 58 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFE------------I-DEQR---------IELSLWDTSG 58 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999998765 34455554321110000 0 1111 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
. +.+..+...+++.+|++|+|+|.+++.+..+. .|+..++. ...|+++|.||+|+..
T Consensus 59 ~----~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 59 S----PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred c----hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 6 34455667788999999999999988777763 46666654 3578999999999864
No 213
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=99.37 E-value=1.6e-12 Score=139.96 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=120.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhc
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTM 178 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~ 178 (921)
..++.+.+++++|++.||||.++++.++.++.++++.++|+. |+ +++.++|+.| |++|.
T Consensus 85 ~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv--------~Ve~ElG~~g---g~ed~--------- 144 (282)
T TIGR01859 85 SSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV--------SVEAELGTLG---GIEDG--------- 144 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC--------EEEEeeCCCc---Ccccc---------
Confidence 357899999999999999999999999999999999999999 75 3666677765 44331
Q ss_pred ccCCCCccccCeEE--EecCCHHHHHccccc-CCCCEEE--eCCC----CC-CCCCcc-hhhhhhcCCCCEEEEc--CCC
Q 002437 179 KDSMSESVVLPLVG--RNVQTLDAAFNASSS-EGADFLV--CCFG----EG-QKADVI-ENSLFTNVKIPIFIMN--ASP 245 (921)
Q Consensus 179 ~~~~~~~~~~~~ig--~S~h~~~e~~~A~~~-~gaDyv~--~gpv----Tk-~~~g~~-~~~~~~~~~~Pv~aiG--Gi~ 245 (921)
++| .|+|+++|+.++ .+ .|+||+. +||+ ++ +..+++ ++++++.+++|+|++| ||+
T Consensus 145 -----------~~g~~~~~t~~eea~~f-~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~ 212 (282)
T TIGR01859 145 -----------VDEKEAELADPDEAEQF-VKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP 212 (282)
T ss_pred -----------ccccccccCCHHHHHHH-HHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC
Confidence 234 689999999999 65 8999999 7886 23 334555 6888988999999999 999
Q ss_pred ccChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 246 LVDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 246 ~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
.+|+..+.++|+.+|++.......|...+.+.+
T Consensus 213 ~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 213 EEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHH
Confidence 999999999999999887777666666665544
No 214
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.36 E-value=1.1e-11 Score=134.20 Aligned_cols=148 Identities=22% Similarity=0.356 Sum_probs=94.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC--------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVV--------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~--------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.++|+++|.+|+|||||+|+|++..+.+.... +.|..+...... ...+|.. -
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~-----------i~~~g~~---------~ 63 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE-----------IEENGVK---------L 63 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE-----------EEECCEE---------E
Confidence 58999999999999999999999987654321 112111111110 0111211 1
Q ss_pred ccEEEeCCCCChhhh---HHHHHH-----------H--------Hhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVILQ---RQQRLT-----------E--------EFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~---~~~~~~-----------~--------~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~ 490 (921)
.+++|||||+++... ....++ . ..+ .++|+++|+++... ..+..+.++++.+..
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~- 142 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK- 142 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-
Confidence 489999999864311 011110 0 112 25899999999874 677888999999986
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.|+++|+||+|+.. .+++....+.+.+.+.. ...++|+...
T Consensus 143 ~v~vi~VinK~D~l~-~~e~~~~k~~i~~~l~~----~~i~~~~~~~ 184 (276)
T cd01850 143 RVNIIPVIAKADTLT-PEELKEFKQRIMEDIEE----HNIKIYKFPE 184 (276)
T ss_pred cCCEEEEEECCCcCC-HHHHHHHHHHHHHHHHH----cCCceECCCC
Confidence 789999999999984 34555555555555444 2455665544
No 215
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.36 E-value=1.1e-11 Score=147.35 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=94.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC--CCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--SPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--~~~l~~l~lvD 441 (921)
..+|+++|+.++|||||+++|+...-........+ .+.+....+.++........+.+.+. ..--..+.|||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~------~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liD 76 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMRE------QVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLID 76 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccc------cccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEE
Confidence 46899999999999999999987532111100000 00010000111111111111111111 00002489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||... +...+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.+
T Consensus 77 TPG~~d----F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~--~~~~~~el---- 146 (595)
T TIGR01393 77 TPGHVD----FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD--PERVKKEI---- 146 (595)
T ss_pred CCCcHH----HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC--HHHHHHHH----
Confidence 999843 44456778899999999999998877776665555556678999999999986431 12222222
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.++.....++++||+++
T Consensus 147 ~~~lg~~~~~vi~vSAktG 165 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTG 165 (595)
T ss_pred HHHhCCCcceEEEeeccCC
Confidence 2333433346899999987
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.36 E-value=1.6e-11 Score=145.59 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=84.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~lvD 441 (921)
+++.|+++|++++|||||+|+|.+..+........|..+......... . . ...+.....++... +.+++|||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~~i~~iD 77 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDV-I--E----KIAGPLKKPLPIKLKIPGLLFID 77 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccc-c--c----cccceeccccccccccCCEEEEE
Confidence 578999999999999999999998765432222223222111110000 0 0 00010000011100 12489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
|||.. .+..++...+..+|++++|+|++++...+....+..+...+.|+++++||+|+.
T Consensus 78 TPG~e----~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 78 TPGHE----AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CCChH----HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 99974 344455667788999999999998777777777777777889999999999986
No 217
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=1.1e-11 Score=130.26 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=82.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..++|||||++.+.+..+. ....||......... ..++.. ..+.|||||
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i-------------~~~~~~---------v~l~iwDTa 69 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGL-------------ETEEQR---------VELSLWDTS 69 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEE-------------EECCEE---------EEEEEEeCC
Confidence 478999999999999999999987653 344555432111100 001111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
|. +.+..+...++..+|++|+|+|.+++.+... ..|+..+.. ...|+|+|.||+|+..
T Consensus 70 G~----e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 70 GS----PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred Cc----hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 96 4556677789999999999999998877665 246666654 2568999999999853
No 218
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.36 E-value=1.4e-11 Score=129.57 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=99.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...+..|+|+|.+|+|||||+|+|++..... ........++.... ....++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-~~~~~~g~i~i~~~--------------------------~~~~i~~v 88 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-NISDIKGPITVVTG--------------------------KKRRLTFI 88 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-ccccccccEEEEec--------------------------CCceEEEE
Confidence 3567889999999999999999998752110 00000000111100 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ..+.+.+..+|++++|+|+..+....+..++..+...+.|. ++|+||+|+..+....+++.+.++.
T Consensus 89 DtPg~~-------~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~ 161 (225)
T cd01882 89 ECPNDI-------NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH 161 (225)
T ss_pred eCCchH-------HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 999842 22344568899999999999888888888888888777775 5599999998654446666666666
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+...+. ...+|+++||++.
T Consensus 162 ~~~~~~~-~~~ki~~iSa~~~ 181 (225)
T cd01882 162 RFWTEVY-QGAKLFYLSGIVH 181 (225)
T ss_pred HHHHhhC-CCCcEEEEeeccC
Confidence 5543322 3579999999876
No 219
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=99.35 E-value=3e-12 Score=138.36 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~ 180 (921)
++.+.+|+++|++.||+|.+.++.++.++.+++++++|+. |+.| +.++| |++..
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v--------E~ElG----~i~g~------------- 143 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV--------EAEVG----TIGGE------------- 143 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE--------EEecC----cccCc-------------
Confidence 5789999999999999999999999999999999999999 8877 44444 23210
Q ss_pred CCCCccccCeEEEec-CCHHHHHcccccCCCCEEEeC--CC-----CC-CCCCcc-hhhhhhcC-CCCEEEEcC--CCcc
Q 002437 181 SMSESVVLPLVGRNV-QTLDAAFNASSSEGADFLVCC--FG-----EG-QKADVI-ENSLFTNV-KIPIFIMNA--SPLV 247 (921)
Q Consensus 181 ~~~~~~~~~~ig~S~-h~~~e~~~A~~~~gaDyv~~g--pv-----Tk-~~~g~~-~~~~~~~~-~~Pv~aiGG--i~~~ 247 (921)
++ +++|.|+ |+++++.++ .+.|+||+.+| |+ |+ +..+++ ++++.+.+ ++|++++|| |+.+
T Consensus 144 --ed----~~~g~s~~t~peea~~f-~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e 216 (293)
T PRK07315 144 --ED----GIIGKGELAPIEDAKAM-VETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDD 216 (293)
T ss_pred --Cc----cccCccCCCCHHHHHHH-HHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHH
Confidence 12 1577788 999999999 79999999999 88 32 334555 68888888 599999999 9999
Q ss_pred ChHHHHHcCCcEEEEeecccccchHHHH
Q 002437 248 DVSKFLKSGASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~~~~~~~ 275 (921)
|+..+.++|+.+|+++++....|...+.
T Consensus 217 ~~~~~i~~Gi~KiNv~T~i~~~~~~~~~ 244 (293)
T PRK07315 217 QIQEAIKLGVAKVNVNTECQIAFANATR 244 (293)
T ss_pred HHHHHHHcCCCEEEEccHHHHHHHHHHH
Confidence 9999999999999998888765554444
No 220
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.35 E-value=9.5e-12 Score=142.36 Aligned_cols=169 Identities=21% Similarity=0.197 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-----------CCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV-----------VPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-----------~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
++|+|+|+.++|||||+++|+...-..... ..++ ..+.+-...+...++.++......+...+.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 479999999999999999998653221110 1111 122222223333333344433333322222221
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCCh-HHH
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~-~~~ 510 (921)
..+.|+||||... +...+...+..+|++|+|+|+..+...+..+.+..+...+ +++|+|+||+|+.... +.+
T Consensus 80 --~~~~liDtPGh~~----f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 153 (406)
T TIGR02034 80 --RKFIVADTPGHEQ----YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVF 153 (406)
T ss_pred --eEEEEEeCCCHHH----HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHH
Confidence 3589999999643 3333445678999999999999877666655555555544 4689999999997532 223
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+++.+.+...+.. ++....+++++||+.+.
T Consensus 154 ~~i~~~~~~~~~~-~~~~~~~iipiSA~~g~ 183 (406)
T TIGR02034 154 ENIKKDYLAFAEQ-LGFRDVTFIPLSALKGD 183 (406)
T ss_pred HHHHHHHHHHHHH-cCCCCccEEEeecccCC
Confidence 3344443333222 24345789999999873
No 221
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=8.9e-12 Score=122.37 Aligned_cols=140 Identities=24% Similarity=0.309 Sum_probs=82.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++.. .+....+++. ......+.. ++.. ..+.++|||
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 58 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-------------DGKT---------YKFNLLDTA 58 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-------------CCEE---------EEEEEEECC
Confidence 689999999999999999999988 5555544433 222211111 1100 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|.. ........+...++.+++++|.... .......+.... ..+.|+++|+||+|+.... ....
T Consensus 59 G~~----~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-----~~~~ 128 (161)
T TIGR00231 59 GQE----DYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-----LKTH 128 (161)
T ss_pred Ccc----cchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-----hhHH
Confidence 963 2233344445566666666665433 111111122222 2278999999999997542 2222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
....+... ...+++++||+.+
T Consensus 129 ~~~~~~~~---~~~~~~~~sa~~~ 149 (161)
T TIGR00231 129 VAFLFAKL---NGEPIIPLSAETG 149 (161)
T ss_pred HHHHHhhc---cCCceEEeecCCC
Confidence 22222222 2456999999887
No 222
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.34 E-value=1.6e-11 Score=124.08 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=83.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..++|||||+..+....+. ....||.......... .++.. -.+.||||+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~-------------~~~~~---------v~l~i~Dt~G 58 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVS-------------VDGNT---------VNLGLWDTAG 58 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcceeeeEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 57999999999999999999987763 3455655322111110 01211 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
. +++..+...+++.+|++|+|+|.+++.+..+. .++..++. .+.|+++|.||+|+..
T Consensus 59 ~----~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 59 Q----EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred C----ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 7 34555677789999999999999988877765 46776653 3579999999999964
No 223
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.34 E-value=1.2e-11 Score=129.13 Aligned_cols=148 Identities=24% Similarity=0.324 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC--CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV--VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~--~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.+|+++|.+|+||||++|.|+|.+..+++. .++|.......... +| +.+++|||
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-------------~g-----------~~v~VIDT 56 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-------------DG-----------RQVTVIDT 56 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-------------TT-----------EEEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-------------cc-----------eEEEEEeC
Confidence 379999999999999999999999887653 34554444332211 12 25899999
Q ss_pred CCCChhhhHHH---HHHHH----hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHH
Q 002437 443 PGTNVILQRQQ---RLTEE----FVPRADLVLFVISADRPLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 443 PG~~~~~~~~~---~~~~~----~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~ 510 (921)
||+.+...... ..+.+ ..+..|++|||++.+ .++..+...++.+.. .-+.+++|+|.+|...+. .+
T Consensus 57 PGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-~~ 134 (212)
T PF04548_consen 57 PGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-SL 134 (212)
T ss_dssp -SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-TH
T ss_pred CCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-cH
Confidence 99965432222 22222 236789999999998 789999988887754 225799999999988653 34
Q ss_pred HHHHHH-HHHHHHHhhCCCCCeEEEeccc
Q 002437 511 EEAISF-VKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 511 ~~v~~~-~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
++..+. ....++.++.....+++.++.+
T Consensus 135 ~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 135 EDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 444442 2234555655556788888876
No 224
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.34 E-value=2e-11 Score=144.86 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=114.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|+.++|||||+++|+...-........+. ...+....+.++..........+.+.. ..+.||||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~---~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNG---TKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECC---EEEEEEECCC
Confidence 47999999999999999999864211111110110 111111122222222211111112211 2589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
..+ +...+..++..+|++|+|+|+..+...+...++..+...+.|+++|+||+|+... ...++.+.+.+.+..+
T Consensus 74 h~D----F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a--~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 74 HAD----FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA--RPDEVVDEVFDLFAEL 147 (594)
T ss_pred HHH----HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc--CHHHHHHHHHHHHHhh
Confidence 743 3345677889999999999999877777778888888889999999999998643 2234444444444322
Q ss_pred hCC---CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 525 LNI---ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 525 ~~~---~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
-.. ...+++++||+.+....... ....|+..|.+.+.+.+..
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~-----------------~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLD-----------------DPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccCcEEechhhcCcccccCc-----------------ccccCHHHHHHHHHHhCCC
Confidence 111 24689999999884321110 0134677777777776654
No 225
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.34 E-value=3.2e-11 Score=126.21 Aligned_cols=147 Identities=27% Similarity=0.289 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|..|+|||||++.+.+..+ +..+.||........+. .++.. ..+.||||+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~-------------~~~~~---------v~L~iwDt~G 58 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFE-------------IDKRR---------IELNMWDTSG 58 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEE-------------ECCEE---------EEEEEEeCCC
Confidence 6899999999999999999998765 44556665322111110 11221 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-H-HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHH-------
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-V-FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEA------- 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~-~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v------- 513 (921)
. +.+..+...+++.+|++|+|+|.+++.+..+. . +...+.. .+.|+++|.||+|+..+.......
T Consensus 59 ~----e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~p 134 (222)
T cd04173 59 S----SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIP 134 (222)
T ss_pred c----HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCc
Confidence 6 34556677788999999999999987666554 2 3333433 357999999999997542221111
Q ss_pred -HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 -ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 -~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.......+.+.++ ..+++.+||+++
T Consensus 135 Is~e~g~~~ak~~~--~~~y~E~SAk~~ 160 (222)
T cd04173 135 VTHEQGTVLAKQVG--AVSYVECSSRSS 160 (222)
T ss_pred cCHHHHHHHHHHcC--CCEEEEcCCCcC
Confidence 1111122222222 247889999875
No 226
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=127.85 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=66.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.-+|+++|.||+|||||+|.|++.+.-+.++.+||..+........+ -.+.++|+|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g------------------------a~IQild~P 118 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG------------------------AQIQLLDLP 118 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC------------------------ceEEEEcCc
Confidence 35899999999999999999999998888888888765433222111 148999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISADRPLT 477 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t 477 (921)
|+-.... .....+...++.||+|++|+|+..+..
T Consensus 119 gii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 119 GIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred ccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence 9842211 112346667799999999999986543
No 227
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.33 E-value=4.6e-12 Score=133.27 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=119.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH----HHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG----KSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~----~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~G--vHL~~~~ 168 (921)
.+.+.++.+.++|+++||||.++.+- ....+.++++++.|. . ++.|++|| +++.+.++|+|| ||.++.+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~~ 96 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEASE 96 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeeccch
Confidence 77889999999999999999987642 113678888888885 5 68899999 999999999999 9998877
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcCC---
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNVK--- 235 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~~--- 235 (921)
.+....+...+ .+ . .+|.+| |+..+..++ ...++||+.++|+ |+... ++. ...+++..+
T Consensus 97 ~~~~~~~~~~~---~~-~---~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~ 168 (220)
T PRK05581 97 HIHRLLQLIKS---AG-I---KAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERG 168 (220)
T ss_pred hHHHHHHHHHH---cC-C---EEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence 66555555543 23 2 567777 566666555 4567999999987 33211 222 233333222
Q ss_pred --CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 --IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 --~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.||.+.|||+++|+.++.++|+++|++.++.++.
T Consensus 169 ~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 169 LDILIEVDGGINADNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 3356779999999999999999999999998864
No 228
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=2.7e-10 Score=125.10 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHHh-cCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCCC
Q 002437 323 EKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAVS-QIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDGV 394 (921)
Q Consensus 323 ~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~~ 394 (921)
.+.++..+++.+.+.++.++...+.... ..++.+... ....++.|+|+|.+|+|||||++.|.. .++.....
T Consensus 13 ~~~~~~g~~~a~a~~it~~e~~~~~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 13 VEGVLAGDRAALARAITLVESTRPDHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCchhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4556677889999999999987664321 223444333 356789999999999999999998753 23332233
Q ss_pred CCccceeEEEEccCCccchhhcccccCCCeEEeecC-------------------CCcccccEEEeCCCCChhhhHHHHH
Q 002437 395 VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP-------------------SPILKEMIIVDTPGTNVILQRQQRL 455 (921)
Q Consensus 395 ~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p-------------------~~~l~~l~lvDTPG~~~~~~~~~~~ 455 (921)
.|++...- ..-.+...........++.++...+ .....+++||||+|++... ..
T Consensus 93 Dp~s~~~~---gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~---~~- 165 (332)
T PRK09435 93 DPSSTRTG---GSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSE---TA- 165 (332)
T ss_pred CCCccccc---hhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccch---hH-
Confidence 33221000 0000000000000000111111100 0011368999999986221 11
Q ss_pred HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHH-hhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh---CCCCCe
Q 002437 456 TEEFVPRADLVLFVISADRPLTESEVVFLRY-TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL---NIENVT 531 (921)
Q Consensus 456 ~~~~l~~aD~il~V~da~~~~t~~e~~~l~~-l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~ 531 (921)
....||++++|++.. +..+.+.++. +.+ ..-++|+||+|+.... ........+...+...- ..+.++
T Consensus 166 ---i~~~aD~vlvv~~p~---~gd~iq~~k~gi~E--~aDIiVVNKaDl~~~~-~a~~~~~el~~~L~l~~~~~~~w~~p 236 (332)
T PRK09435 166 ---VAGMVDFFLLLQLPG---AGDELQGIKKGIME--LADLIVINKADGDNKT-AARRAAAEYRSALRLLRPKDPGWQPP 236 (332)
T ss_pred ---HHHhCCEEEEEecCC---chHHHHHHHhhhhh--hhheEEeehhcccchh-HHHHHHHHHHHHHhcccccccCCCCC
Confidence 356799999997633 3344433332 222 2238999999998542 33334444444333211 124478
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
|+++||+++ .|+++|.+.+.+++..
T Consensus 237 Vi~vSA~~g---------------------------~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 237 VLTCSALEG---------------------------EGIDEIWQAIEDHRAA 261 (332)
T ss_pred EEEEECCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 999999887 7999999999887653
No 229
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.32 E-value=3.4e-11 Score=143.46 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=108.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc--ccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI--LKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~--l~~l~lv 440 (921)
...+|+++|+.++|||||+++|+...-........+ .+.+....+.++........+.+.|.... -..+.||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~------~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLi 79 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKA------QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLI 79 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCccccccc------ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEE
Confidence 456899999999999999999986421110000000 01111111112222222222212121000 1248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||..+ +...+..++..+|++|+|+|++++........+..+...+.|+++|+||+|+... +.+.+.+.+
T Consensus 80 DTPGh~d----F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a--~~~~v~~ei--- 150 (600)
T PRK05433 80 DTPGHVD----FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA--DPERVKQEI--- 150 (600)
T ss_pred ECCCcHH----HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc--cHHHHHHHH---
Confidence 9999853 3344667788999999999999887777666666666678899999999998643 122222332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.++.....++++||+++ .|+++|.+.|.+.+..
T Consensus 151 -~~~lg~~~~~vi~iSAktG---------------------------~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 151 -EDVIGIDASDAVLVSAKTG---------------------------IGIEEVLEAIVERIPP 185 (600)
T ss_pred -HHHhCCCcceEEEEecCCC---------------------------CCHHHHHHHHHHhCcc
Confidence 2334433346999999987 5777777777666553
No 230
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.32 E-value=2.1e-11 Score=128.96 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|+|.........++|..+....... .+ ..+.++||||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-------------~~-----------~~i~l~DtpG~ 57 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-------------KG-----------AKIQLLDLPGI 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-------------CC-----------eEEEEEECCCc
Confidence 5899999999999999999998755555556664433221110 01 24889999998
Q ss_pred Chhhh---HHHHHHHHhcCCCCEEEEEEeCCCC
Q 002437 446 NVILQ---RQQRLTEEFVPRADLVLFVISADRP 475 (921)
Q Consensus 446 ~~~~~---~~~~~~~~~l~~aD~il~V~da~~~ 475 (921)
....+ ........+++.+|++++|+|++++
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 58 IEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred ccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 53321 1222345678999999999998754
No 231
>PRK10218 GTP-binding protein; Provisional
Probab=99.32 E-value=2.7e-11 Score=143.53 Aligned_cols=165 Identities=21% Similarity=0.164 Sum_probs=100.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|+.++|||||+++|+...-....... +.. +...+... +.++..........+.+. -..+.+|||
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~~-~v~D~~~~---E~erGiTi~~~~~~i~~~---~~~inliDT 75 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQE-RVMDSNDL---EKERGITILAKNTAIKWN---DYRINIVDT 75 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cce-eeeccccc---cccCceEEEEEEEEEecC---CEEEEEEEC
Confidence 4678999999999999999999974211100000 000 11111111 111111100000001110 025899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.... ...+..+++.+|++|+|+|+..+...+....+..+...+.|+++|+||+|+... ..+++.+.+.+.+.
T Consensus 76 PG~~df----~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a--~~~~vl~ei~~l~~ 149 (607)
T PRK10218 76 PGHADF----GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA--RPDWVVDQVFDLFV 149 (607)
T ss_pred CCcchh----HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC--chhHHHHHHHHHHh
Confidence 997533 345677889999999999999877777777788878888999999999998643 23334444444433
Q ss_pred Hhh---CCCCCeEEEecccchH
Q 002437 523 KLL---NIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~---~~~~~~v~~vSA~~~l 541 (921)
.+- .....||+++||+.+.
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred ccCccccccCCCEEEeEhhcCc
Confidence 211 1135789999999985
No 232
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.8e-11 Score=134.15 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=112.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+++|.|.++|+...|||||+.+|.+..+........|..+-. +...+| ..+.++|+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGA---------------------F~V~~p--~G~~iTFLD 207 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGA---------------------FTVTLP--SGKSITFLD 207 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceece---------------------EEEecC--CCCEEEEec
Confidence 368999999999999999999999998876666655554322 222222 124699999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||. ..+..+..+-..-+|.|++|+.++++...+..+.++..+..+.|+++.+||+|.... ..+.+++.+...
T Consensus 208 TPGH----aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a--~pekv~~eL~~~g 281 (683)
T KOG1145|consen 208 TPGH----AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA--NPEKVKRELLSQG 281 (683)
T ss_pred CCcH----HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcC
Confidence 9996 344455666678899999999999999999999999999999999999999997654 344454444322
Q ss_pred --HHHhhCCCCCeEEEecccch
Q 002437 521 --TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 --~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+ | .+++++++||+++
T Consensus 282 i~~E~~-G-GdVQvipiSAl~g 301 (683)
T KOG1145|consen 282 IVVEDL-G-GDVQVIPISALTG 301 (683)
T ss_pred ccHHHc-C-CceeEEEeecccC
Confidence 1222 2 3689999999997
No 233
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.30 E-value=1.6e-11 Score=129.97 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=88.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|..|+|||||+++|+...-............+. .+....+..+..........+.+.. ..+.+|||||.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~---~D~~~~e~~rg~ti~~~~~~~~~~~---~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTR---TDTMELERQRGITIFSAVASFQWED---TKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCccc---CCCchhHhhCCCceeeeeEEEEECC---EEEEEEeCCCc
Confidence 48999999999999999998653221111100000000 1111111112111111111111111 25899999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
... ...+..+++.+|++++|+|+..+.......++..+...+.|+++|+||+|+... +.+++.+.+++.+
T Consensus 75 ~~f----~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a--~~~~~~~~i~~~~ 144 (237)
T cd04168 75 MDF----IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA--DLEKVYQEIKEKL 144 (237)
T ss_pred cch----HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC--CHHHHHHHHHHHH
Confidence 533 334667888999999999999888777777888888888999999999998753 3355555555543
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.4e-11 Score=135.39 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=113.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++|.|.++|+...|||||+..+.+.++.+.....-|..+-.++...... ..+.++|+||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~---------------------~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---------------------KIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC---------------------CCceEEEEcC
Confidence 6799999999999999999999999998877777777665544332110 1136999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH--
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN-- 520 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~-- 520 (921)
||. +.+..+..+-..-+|.+++|++++++...+..+-+..++..+.|+++.+||+|.... ....+...+.+.
T Consensus 63 PGH----eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~--np~~v~~el~~~gl 136 (509)
T COG0532 63 PGH----EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA--NPDKVKQELQEYGL 136 (509)
T ss_pred CcH----HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC--CHHHHHHHHHHcCC
Confidence 996 344455555568899999999999999999999999999999999999999999854 233333333322
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.++ ....++++||+++
T Consensus 137 ~~E~~g-g~v~~VpvSA~tg 155 (509)
T COG0532 137 VPEEWG-GDVIFVPVSAKTG 155 (509)
T ss_pred CHhhcC-CceEEEEeeccCC
Confidence 111122 3588999999998
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.29 E-value=4.9e-11 Score=136.67 Aligned_cols=114 Identities=27% Similarity=0.255 Sum_probs=76.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.++||||.. .+...+...+..+|++++|+|++++. ..+..+.+..+...+ +|+++|+||+|+... +...+.
T Consensus 81 ~i~liDtPGh~----~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-~~~~~~ 155 (406)
T TIGR03680 81 RVSFVDAPGHE----TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-EKALEN 155 (406)
T ss_pred EEEEEECCCHH----HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-HHHHHH
Confidence 58999999973 33344556667899999999999765 444445555555544 579999999999853 233333
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+.+.+... .....+++++||+.+ .|++.|.+.|...+.
T Consensus 156 ~~~i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-VAENAPIIPVSALHN---------------------------ANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-ccCCCeEEEEECCCC---------------------------CChHHHHHHHHHhCC
Confidence 33333322222 123578999999987 577888888877654
No 236
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.28 E-value=1.8e-11 Score=123.78 Aligned_cols=146 Identities=22% Similarity=0.299 Sum_probs=94.4
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.....+|+++|..||||||+++.|...+... ..||.. +....... .+ ..+.++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~--~~pT~g-~~~~~i~~-------------~~-----------~~~~~~ 63 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE--TIPTIG-FNIEEIKY-------------KG-----------YSLTIW 63 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE--EEEESS-EEEEEEEE-------------TT-----------EEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc--cCcccc-cccceeee-------------Cc-----------EEEEEE
Confidence 3567899999999999999999999765432 334432 22211111 01 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHh-h---hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYT-Q---QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l-~---~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|.+|.. .....+..|+..+|++|||+|++++....+ ...|..+ . -.+.|+++++||.|..... ..+++..
T Consensus 64 d~gG~~----~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-~~~~i~~ 138 (175)
T PF00025_consen 64 DLGGQE----SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-SEEEIKE 138 (175)
T ss_dssp EESSSG----GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-THHHHHH
T ss_pred eccccc----cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc-hhhHHHh
Confidence 999963 334567888999999999999987543222 2334333 2 2468999999999987542 2233333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+. +..+-......|+.+||.++
T Consensus 139 ~l~--l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 139 YLG--LEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp HTT--GGGTTSSSCEEEEEEBTTTT
T ss_pred hhh--hhhcccCCceEEEeeeccCC
Confidence 321 11221245678999999987
No 237
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.28 E-value=2.3e-10 Score=122.99 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+||||++|+|+|.++...+. .++|...+..... .+| ..+.+||
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-------------~~G-----------~~l~VID 92 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-------------RAG-----------FTLNIID 92 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-------------ECC-----------eEEEEEE
Confidence 56899999999999999999999998754333 2333222221110 012 2589999
Q ss_pred CCCCChhhh---HHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCCCC
Q 002437 442 TPGTNVILQ---RQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-----KKKVVFVLNKSDLYQN 506 (921)
Q Consensus 442 TPG~~~~~~---~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~~ 506 (921)
|||+.+... ........++ ...|+||||.+.+. ..+..+.++++.+... -.++|+|+|++|..++
T Consensus 93 TPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 93 TPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 999975421 2223334443 36999999976542 4677778877777652 2689999999998743
No 238
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.28 E-value=3.1e-11 Score=139.38 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=126.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC---------cHHHHHh
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE---------RVDIAAA 156 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd---------~~dla~~ 156 (921)
+|++..|.. ..++.++.+++++++|+++++. +. ........+.++.+|+. +..+|+|| +++.|.+
T Consensus 5 ~l~~alD~~-~~~~~~~~~~~~~~~Gv~~ie~---g~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~ 79 (430)
T PRK07028 5 ILQVALDLL-ELDRAVEIAKEAVAGGADWIEA---GT-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAK 79 (430)
T ss_pred eEEEEeccC-CHHHHHHHHHHHHhcCCcEEEe---CC-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHH
Confidence 566666653 3457889999999999999985 33 23335567888899987 67899999 9999999
Q ss_pred CCCCeEEc-CCCCC-CHH----HHHHhcccCCCCccccCeEE-EecCC-HHHHHcccccCCCCEEEeCCC-CCC---CCC
Q 002437 157 VNASGVLL-SDQGL-PAI----VARNTMKDSMSESVVLPLVG-RNVQT-LDAAFNASSSEGADFLVCCFG-EGQ---KAD 224 (921)
Q Consensus 157 ~~a~GvHL-~~~~l-~~~----~~r~~~~~~~~~~~~~~~ig-~S~h~-~~e~~~A~~~~gaDyv~~gpv-Tk~---~~g 224 (921)
+|+||||+ ++.+. +.. .+|. .| .. . .+| .|+++ .+.+..| .+.|+||+.++|. ++. +.+
T Consensus 80 aGAdgV~v~g~~~~~~~~~~i~~a~~-~G---~~-~---~~g~~s~~t~~e~~~~a-~~~GaD~I~~~pg~~~~~~~~~~ 150 (430)
T PRK07028 80 AGADIVCILGLADDSTIEDAVRAARK-YG---VR-L---MADLINVPDPVKRAVEL-EELGVDYINVHVGIDQQMLGKDP 150 (430)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHH-cC---CE-E---EEEecCCCCHHHHHHHH-HhcCCCEEEEEeccchhhcCCCh
Confidence 99999996 65442 222 3333 23 22 1 344 58876 5667887 7899999999997 332 223
Q ss_pred cc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++ .+++++..++||+++|||+++|+.++.++||+||++.++.++.
T Consensus 151 ~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 151 LELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred HHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence 33 4677777789999999999999999999999999999888764
No 239
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.28 E-value=6.3e-11 Score=135.62 Aligned_cols=184 Identities=22% Similarity=0.232 Sum_probs=103.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCC--CCCC-CCCccceeEEEEccCCc--c----chhhcccccCC-CeEEeecC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRY--LKDG-VVPTTNEITFLRFSDLA--S----EEQQRCERHPD-GQYICYLP 430 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~-~~~tT~~~~~~~~~~~~--~----~~~~~~~~~~~-g~~~~~~p 430 (921)
..+.++|+++|+.++|||||+.+|.+... .+.. ....|............ . ........... + .+
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 80 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCG-----SE 80 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccc-----cc
Confidence 34678999999999999999999977421 1100 00112111110000000 0 00000000000 0 00
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChH
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~ 508 (921)
......+.|+||||.. .+...+...+..+|++++|+|++++. .......+..+...+ +|+++|+||+|+... +
T Consensus 81 ~~~~~~i~liDtPG~~----~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~-~ 155 (411)
T PRK04000 81 TELLRRVSFVDAPGHE----TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK-E 155 (411)
T ss_pred cccccEEEEEECCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc-h
Confidence 0001358999999963 33333444456789999999999875 455555555555554 479999999999754 2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....+.+...+... .....+++++||+.+ .|++.|.+.|.+.+.
T Consensus 156 ~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 156 RALENYEQIKEFVKGT-VAENAPIIPVSALHK---------------------------VNIDALIEAIEEEIP 201 (411)
T ss_pred hHHHHHHHHHHHhccc-cCCCCeEEEEECCCC---------------------------cCHHHHHHHHHHhCC
Confidence 2222223333322211 123578999999987 678888888877654
No 240
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.28 E-value=3.6e-11 Score=139.04 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC---------CCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV---------VPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~---------~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
..++|+++|+.++|||||+++|+...-..... ... +..+.+....+....+..+......+...+.+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-- 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-- 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC--
Confidence 56789999999999999999998532110000 000 000000000111111111111111111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC---CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC-Ch
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP---LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ-NA 507 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~---~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~-~~ 507 (921)
-..+.||||||.. .+...+...+..+|++++|+|++++ ........+..+...+ .|+++|+||+|+.. ++
T Consensus 84 -~~~i~iiDtpGh~----~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 -KYEVTIVDCPGHR----DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred -CeEEEEEECCCHH----HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 1258999999963 3333455566889999999999877 3222223233333333 57999999999975 33
Q ss_pred HHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
+..+.+.+.+.+.+... +. ...+++++||+.+.
T Consensus 159 ~~~~~~~~ei~~~~~~~-g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKV-GYNPDTVPFIPISAWNGD 193 (426)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcccceEEEeeccccc
Confidence 34555555555544432 22 34789999999873
No 241
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.27 E-value=1e-10 Score=134.35 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=109.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC---CCCccceeEEEEccCCccc------hhhcccccCCC---eEEe---
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG---VVPTTNEITFLRFSDLASE------EQQRCERHPDG---QYIC--- 427 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~---~~~tT~~~~~~~~~~~~~~------~~~~~~~~~~g---~~~~--- 427 (921)
....|+++|+..+|||||+.+|+|.....-. ....|.. +.|...... ........+.+ ...+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~---lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIK---LGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchh---ccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4679999999999999999999986432110 0111111 111110000 00000000000 0000
Q ss_pred ecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC
Q 002437 428 YLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ 505 (921)
Q Consensus 428 ~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~ 505 (921)
..+..+.+.+.||||||. +.+...+...+..+|++++|+|++.+ ...+..+.+..+...+ +++|+|+||+|+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH----~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGH----DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCH----HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 000111236899999995 34444455566889999999999975 3444445555444444 46899999999984
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+..++..+.+++.+.... ....+++++||+.+ .|++.|.+.|.+.+.
T Consensus 186 -~~~~~~~~~ei~~~l~~~~-~~~~~iipVSA~~G---------------------------~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 186 -EAQAQDQYEEIRNFVKGTI-ADNAPIIPISAQLK---------------------------YNIDVVLEYICTQIP 233 (460)
T ss_pred -HHHHHHHHHHHHHHHHhhc-cCCCeEEEeeCCCC---------------------------CCHHHHHHHHHhhCC
Confidence 3455555566655544432 25689999999987 578888888886554
No 242
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.26 E-value=6.1e-10 Score=116.58 Aligned_cols=222 Identities=21% Similarity=0.170 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhCccHHHH--HHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCC
Q 002437 320 EDREKQLIETERSVLLEAIDVIKKASPLMEEV--SLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLK 391 (921)
Q Consensus 320 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~ 391 (921)
.+-.+.++..+++.+.+++..+++..+.-... ..+........+..+|+|.|.||+|||||+.+|. |.++..
T Consensus 5 ~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaV 84 (323)
T COG1703 5 DELIERLLAGDRRALARAITLVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAV 84 (323)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEE
Confidence 33456778889999999999999876653332 3344555667778899999999999999999986 334433
Q ss_pred CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHH
Q 002437 392 DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQ 452 (921)
Q Consensus 392 ~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~ 452 (921)
..+.|+.... ...-.++...........|.++...|+. ...+++||.|-|++-.
T Consensus 85 lAVDPSSp~T---GGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---- 157 (323)
T COG1703 85 LAVDPSSPFT---GGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---- 157 (323)
T ss_pred EEECCCCCCC---CccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc----
Confidence 3333332100 0000011111111111223333333311 1357999999998622
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH-HHhhCCCCCe
Q 002437 453 QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT-MKLLNIENVT 531 (921)
Q Consensus 453 ~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 531 (921)
--....-+|.+++|+-..-+ .+.+.++. .-+..--++|+||+|....+....++...+.... ...-..+.+|
T Consensus 158 ---ev~I~~~aDt~~~v~~pg~G---D~~Q~iK~-GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 158 ---EVDIANMADTFLVVMIPGAG---DDLQGIKA-GIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred ---hhHHhhhcceEEEEecCCCC---cHHHHHHh-hhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 12344668999999876543 23332221 1122345899999996654333333333333221 1112347899
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
|+.+||.++ .|+++|++.+.++..
T Consensus 231 v~~t~A~~g---------------------------~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 231 VVTTSALEG---------------------------EGIDELWDAIEDHRK 254 (323)
T ss_pred eeEeeeccC---------------------------CCHHHHHHHHHHHHH
Confidence 999999887 699999999988755
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.26 E-value=4.6e-11 Score=129.50 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=86.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|++..-........+...+...+. .....+..........+.+.. ..+++|||||.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~---~~e~~r~~ti~~~~~~~~~~~---~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYD---PEEIKRKMSISTSVAPLEWKG---HKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCC---HHHHhhcccccceeEEEEECC---EEEEEEECcCH
Confidence 489999999999999999986432211111000000111111 111111111111111111111 25899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. .+...+..++..+|++++|+|++.+.......+++.+...+.|+++|+||+|.... +.++..+.+++
T Consensus 75 ~----~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~--~~~~~~~~l~~ 142 (268)
T cd04170 75 A----DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA--DFDKTLAALQE 142 (268)
T ss_pred H----HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC--CHHHHHHHHHH
Confidence 4 33345677888999999999999887777777888888888999999999998754 34444444444
No 244
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.24 E-value=3.8e-11 Score=122.87 Aligned_cols=161 Identities=23% Similarity=0.222 Sum_probs=97.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|..|+|||||++.+....+. ....+++......... .++.. ..+.++||||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~g 58 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCR-------------VDGKP---------VQLALWDTAG 58 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 57999999999999999999865542 2333333221111100 01110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHH------H-
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEE------A- 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~------v- 513 (921)
.... ......++..+|++++|+|.++..+..+. .++..+.. ...|+++|.||+|+.......++ +
T Consensus 59 ~~~~----~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (187)
T cd04129 59 QEEY----ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP 134 (187)
T ss_pred Chhc----cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC
Confidence 7422 22233456899999999999876655554 35565543 25799999999998542110000 0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... ..+.+.++ ..++|.+||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~-~~~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 173 (187)
T cd04129 135 IQQG-KRVAKEIG--AKKYMECSALTG---------------------------EGVDDVFEAATRAAL 173 (187)
T ss_pred HHHH-HHHHHHhC--CcEEEEccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 0011 11112222 247999999987 688888887765443
No 245
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.24 E-value=1e-10 Score=126.08 Aligned_cols=132 Identities=16% Similarity=0.098 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc----ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT----NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+|+++|++|+|||||+|+|+...-......... ...+.. +....+..+..........+.+. -..+.+|
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~---D~~~~e~~rg~si~~~~~~~~~~---~~~i~li 76 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATS---DWMEIEKQRGISVTSSVMQFEYR---DCVINLL 76 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccC---CCcHHHHhCCCCeEEEEEEEeeC---CEEEEEE
Confidence 5799999999999999999986422111100000 000000 11111111111111111111111 1258999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||||.... ...+..+++.+|++|+|+|+..+.......+++.+...+.|+++++||+|+...
T Consensus 77 DTPG~~df----~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 77 DTPGHEDF----SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred ECCCchHH----HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 99997433 333566778999999999998877666666777777778999999999998654
No 246
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.24 E-value=2.7e-10 Score=107.96 Aligned_cols=142 Identities=21% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|.++|..||||||+++.|.+.+. ....||-. .+..+.+.. ..+.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~--~~i~pt~gf~Iktl~~~~--------------------------~~L~iw 65 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT--DTISPTLGFQIKTLEYKG--------------------------YTLNIW 65 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc--cccCCccceeeEEEEecc--------------------------eEEEEE
Confidence 3479999999999999999999999873 33333322 122222211 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCC--hHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQN--AFELEEA 513 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~--~~~~~~v 513 (921)
|..|. ....+.+.+|+..+|++|||+|.+.+...++- ..|..+ +-.+.|++++.||.|+.+. .+++..+
T Consensus 66 DvGGq----~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~ 141 (185)
T KOG0073|consen 66 DVGGQ----KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKA 141 (185)
T ss_pred EcCCc----chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHh
Confidence 99997 45677899999999999999999866543332 233322 3356899999999999844 2222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ++.++......+++.+|+.+|
T Consensus 142 ~-----~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 142 L-----DLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred h-----CHHHhccccCceEEEEecccc
Confidence 1 233444556789999999987
No 247
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=1.2e-10 Score=127.03 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=101.1
Q ss_pred HHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC----------------CCCCCC---ccceeEEEEccCCccchhhcc
Q 002437 357 AVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL----------------KDGVVP---TTNEITFLRFSDLASEEQQRC 417 (921)
Q Consensus 357 ~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~----------------~~~~~~---tT~~~~~~~~~~~~~~~~~~~ 417 (921)
...+......|+|+|+.++|||||||++.+.-++ |++... ||.++.++.-.
T Consensus 10 Ia~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~k---------- 79 (492)
T TIGR02836 10 IAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNE---------- 79 (492)
T ss_pred HHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCc----------
Confidence 3446677899999999999999999999998333 333333 44444332111
Q ss_pred cccCCCeEEeecCCCcccccEEEeCCCCChh---hhHHHHH----------------------HHHhcC-CCCEEEEEE-
Q 002437 418 ERHPDGQYICYLPSPILKEMIIVDTPGTNVI---LQRQQRL----------------------TEEFVP-RADLVLFVI- 470 (921)
Q Consensus 418 ~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---~~~~~~~----------------------~~~~l~-~aD~il~V~- 470 (921)
-+........--.+.+|||+|+... ......- +++.+. ++|+.|+|+
T Consensus 80 ------AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtT 153 (492)
T TIGR02836 80 ------AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTT 153 (492)
T ss_pred ------ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEc
Confidence 0111100001125899999998422 1111111 677776 999999998
Q ss_pred eCC------CCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 471 SAD------RPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 471 da~------~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
|.+ ......+.+++..+++.++|+++|+||.|-..++ -.+.. +.+.+.+ +.+++++|+.+
T Consensus 154 Dgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e--t~~l~----~~l~eky---~vpvl~v~c~~ 219 (492)
T TIGR02836 154 DGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPE--TEALR----QELEEKY---DVPVLAMDVES 219 (492)
T ss_pred CCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCch--hHHHH----HHHHHHh---CCceEEEEHHH
Confidence 764 4567888899999999999999999999954331 12222 2222333 37889999854
No 248
>PRK00007 elongation factor G; Reviewed
Probab=99.23 E-value=7.2e-11 Score=143.96 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|++|+|||||+|+|+...-............+ +.+....+..+..........+.+.. ..++||||
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~---~~D~~~~E~~rg~ti~~~~~~~~~~~---~~~~liDT 82 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAA---TMDWMEQEQERGITITSAATTCFWKD---HRINIIDT 82 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcc---cCCCCHHHHhCCCCEeccEEEEEECC---eEEEEEeC
Confidence 4579999999999999999999742111000000000000 11111111222222222222222221 35999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||..... .-+...+..+|++|+|+|+..+.+.++..++..+...+.|+++++||||+... +...+.+.+++.+.
T Consensus 83 PG~~~f~----~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~--~~~~~~~~i~~~l~ 156 (693)
T PRK00007 83 PGHVDFT----IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA--DFYRVVEQIKDRLG 156 (693)
T ss_pred CCcHHHH----HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHhC
Confidence 9974322 23666778899999999999998889999999999999999999999999854 34555666655543
Q ss_pred HhhCCCCCeEEEecccchH
Q 002437 523 KLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l 541 (921)
.. ....++|+|+..++
T Consensus 157 ~~---~~~~~ipisa~~~f 172 (693)
T PRK00007 157 AN---PVPIQLPIGAEDDF 172 (693)
T ss_pred CC---eeeEEecCccCCcc
Confidence 32 23567899987764
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.22 E-value=1.2e-10 Score=134.42 Aligned_cols=169 Identities=20% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--C----------CCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--G----------VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~----------~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+|+++|+.++|||||+.+|+...-... + ....+.... ...+...++..+..........+.+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a--~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYA--WVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhh--hhhcCChHHHhcCEeEEeeeEEEccC
Confidence 457899999999999999999985311100 0 000000000 00111111222222211111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-------CHHHHHHHHHhhhcCCe-EEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-------TESEVVFLRYTQQWKKK-VVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-------t~~e~~~l~~l~~~~~~-vivVlNK~D 502 (921)
-..++|+||||.. ++...+...+..+|++++|+|+..+. ..+..+.+..+...+.| +|+++||+|
T Consensus 84 ---~~~i~lIDtPGh~----~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 84 ---KYYFTIIDAPGHR----DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred ---CeEEEEEECCChH----HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 1358999999963 44444566678999999999998765 24556667777777865 779999999
Q ss_pred CCC---ChHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccch
Q 002437 503 LYQ---NAFELEEAISFVKENTMKLL-NIENVTIYPVSARST 540 (921)
Q Consensus 503 ~~~---~~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~ 540 (921)
... +++.++++.+.+...+...- .....+++|+|+..+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 532 34567777777777766532 124689999999987
No 250
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.22 E-value=1.8e-10 Score=118.86 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=97.9
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
+|..++|||||++.++...+. ....||.. .+....+.. ++.. ..+.||||||.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~Tig~~~~~~~~~~-------------~~~~---------~~l~iwDt~G~--- 54 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHT-------------NRGP---------IRFNVWDTAGQ--- 54 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEE-------------CCEE---------EEEEEEECCCc---
Confidence 599999999999999976542 33444432 111111110 1110 14899999997
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
+++..++..+++.+|++|+|+|.++..+.... .++..+.. .+.|+++|.||+|+.......+. .. +..
T Consensus 55 -e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~-~~-----~~~-- 125 (200)
T smart00176 55 -EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS-IT-----FHR-- 125 (200)
T ss_pred -hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHH-HH-----HHH--
Confidence 45666778899999999999999987665544 35555654 45799999999998532111111 11 111
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
....++|.+||+.+ .|+.++..++...+.
T Consensus 126 -~~~~~~~e~SAk~~---------------------------~~v~~~F~~l~~~i~ 154 (200)
T smart00176 126 -KKNLQYYDISAKSN---------------------------YNFEKPFLWLARKLI 154 (200)
T ss_pred -HcCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12478999999987 577777777766554
No 251
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=9e-11 Score=124.51 Aligned_cols=162 Identities=23% Similarity=0.170 Sum_probs=109.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
-|+++|-||+||||||+++...+.-..++.+||-.+......... + +.+++-|.||+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~------------~-----------~sfv~ADIPGL 217 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG------------G-----------ESFVVADIPGL 217 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC------------C-----------CcEEEecCccc
Confidence 488999999999999999999987778899999766543221100 0 35899999998
Q ss_pred Chhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCC---HHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 446 NVILQ---RQQRLTEEFVPRADLVLFVISADRPLT---ESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 446 ~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t---~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
-.... -..-.-.+.+.++-++++|+|.+.... .++.. +..++.. ..+|.++|+||+|+..++++++..
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHH
Confidence 42211 111224556788999999999874331 23333 3344443 458999999999987776666666
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+.+. .+ +...++ ||+.+. .|++.|...+.+++..
T Consensus 298 ~~~l~~~----~~-~~~~~~-ISa~t~---------------------------~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 298 KKALAEA----LG-WEVFYL-ISALTR---------------------------EGLDELLRALAELLEE 334 (369)
T ss_pred HHHHHHh----cC-CCccee-eehhcc---------------------------cCHHHHHHHHHHHHHH
Confidence 5555432 12 122233 999875 6888888888877763
No 252
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.20 E-value=1.8e-10 Score=114.43 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=85.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..|+|||||++.++...+.+. ..|+..... ... ..+|.. ..+.++||+|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~~-~~i-------------~~~~~~---------~~l~i~D~~g 56 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRFK-KEV-------------LVDGQS---------HLLLIRDEGG 56 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccceE-EEE-------------EECCEE---------EEEEEEECCC
Confidence 3699999999999999999887665432 223221110 000 011211 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
... ..+...+|++++|+|.++..+.++. .++..+.. ...|+++|.||.|+..... ..+......
T Consensus 57 ~~~---------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~--~~v~~~~~~ 125 (158)
T cd04103 57 APD---------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP--RVIDDARAR 125 (158)
T ss_pred CCc---------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC--cccCHHHHH
Confidence 731 2456789999999999988777763 46666653 2469999999999742110 111111111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ....++.+||+++
T Consensus 126 ~~~~~~--~~~~~~e~SAk~~ 144 (158)
T cd04103 126 QLCADM--KRCSYYETCATYG 144 (158)
T ss_pred HHHHHh--CCCcEEEEecCCC
Confidence 122111 2368999999987
No 253
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=3.7e-10 Score=116.15 Aligned_cols=124 Identities=25% Similarity=0.239 Sum_probs=76.1
Q ss_pred CeEEEEEeCCCCCHHHHHH-HHHCCCC----CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 364 PFLLVIVGEYNSGKSSVIN-ALLGKRY----LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiN-aLlg~~~----~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.++|+++|..|+|||||++ .+.+..+ .+....||......+.... . ...+.....+|.. -.+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~-~--~~~~~~~~~~~~~---------v~l~ 69 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQ-E--VLERSRDVVDGVS---------VSLR 69 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEe-e--eccccceeeCCEE---------EEEE
Confidence 4789999999999999996 5544432 2334445542101000000 0 0000000112221 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
||||+|... .....+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+..
T Consensus 70 iwDTaG~~~------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 70 LWDTFGDHD------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEeCCCChh------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 999999732 23445789999999999999887766652 5566654 3579999999999863
No 254
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.20 E-value=9.9e-11 Score=142.92 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=102.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++..+|+|+|++|+|||||+|+|+...-.......+....+. .+....+..+..........+.+.. ..+++||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~---~D~~~~e~~rgiti~~~~~~~~~~~---~~i~liD 81 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAAT---MDWMEQEKERGITITSAATTVFWKG---HRINIID 81 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccc---cCCCHHHHhcCCCEecceEEEEECC---eEEEEEE
Confidence 355799999999999999999998532211110000000000 0111111112222111111222211 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||..... ..+..++..+|++|+|+|+..+....+..++..+...+.|+++|+||+|+... +...+.+.+...+
T Consensus 82 TPG~~~~~----~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~--~~~~~~~~i~~~l 155 (689)
T TIGR00484 82 TPGHVDFT----VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA--NFLRVVNQIKQRL 155 (689)
T ss_pred CCCCcchh----HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHh
Confidence 99985432 24667788999999999999888888888888888888999999999999854 2445555555443
Q ss_pred HHhhCCCCCeEEEecccchH
Q 002437 522 MKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l 541 (921)
.. .....++|+|+..++
T Consensus 156 ~~---~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 156 GA---NAVPIQLPIGAEDNF 172 (689)
T ss_pred CC---CceeEEeccccCCCc
Confidence 21 123458899987764
No 255
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.20 E-value=1.4e-10 Score=120.05 Aligned_cols=200 Identities=22% Similarity=0.221 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCCCccceeEEEEcc
Q 002437 334 LLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVVPTTNEITFLRFS 407 (921)
Q Consensus 334 l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~~tT~~~~~~~~~ 407 (921)
+.+.++.+++..+...+ .+........+.++|+|.|+||+|||||+++|. |.++....+.|+... + ...
T Consensus 1 LAraITlvE~~~~~~~~--ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~-t--GGA 75 (266)
T PF03308_consen 1 LARAITLVENRRPEARE--LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF-T--GGA 75 (266)
T ss_dssp HHHHHHHHH-SSHHHHH--HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC-C-----
T ss_pred CHHHHHHHhCCCHHHHH--HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC-C--CCc
Confidence 34667777776553222 233333455678999999999999999999986 444443344443321 0 000
Q ss_pred CCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEE
Q 002437 408 DLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLF 468 (921)
Q Consensus 408 ~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~ 468 (921)
-.++...........+.++...++. ...+++||.|.|++-. -.+...-+|.+++
T Consensus 76 lLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs-------E~~I~~~aD~~v~ 148 (266)
T PF03308_consen 76 LLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS-------EVDIADMADTVVL 148 (266)
T ss_dssp SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH-------HHHHHTTSSEEEE
T ss_pred ccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc-------HHHHHHhcCeEEE
Confidence 0111111111222344454433311 1257999999998621 2234567999999
Q ss_pred EEeCCCCCCHH-HHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh---hCCCCCeEEEecccchHHh
Q 002437 469 VISADRPLTES-EVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL---LNIENVTIYPVSARSTLEA 543 (921)
Q Consensus 469 V~da~~~~t~~-e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~v~~vSA~~~l~a 543 (921)
|+....+..-+ .+. +++ ..-++|+||+|.... +.....++..+.-. ...+.+||+.+||.++
T Consensus 149 v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~gA----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~--- 215 (266)
T PF03308_consen 149 VLVPGLGDEIQAIKAGIME------IADIFVVNKADRPGA----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEG--- 215 (266)
T ss_dssp EEESSTCCCCCTB-TTHHH------H-SEEEEE--SHHHH----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTT---
T ss_pred EecCCCccHHHHHhhhhhh------hccEEEEeCCChHHH----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCC---
Confidence 99876443211 111 111 245899999995433 22233333222211 1235689999999876
Q ss_pred hcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 544 KLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.|+++|.+.|.++..
T Consensus 216 ------------------------~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 216 ------------------------EGIDELWEAIDEHRD 230 (266)
T ss_dssp ------------------------BSHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHH
Confidence 799999998887644
No 256
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.3e-10 Score=109.76 Aligned_cols=143 Identities=18% Similarity=0.250 Sum_probs=96.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|..++||||||+.+.-+.+. ..+.+|-. ++..-.+ ...+.. -.+.||||
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~------------~l~d~~----------vrLQlWDT 78 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTM------------YLEDRT----------VRLQLWDT 78 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEE------------EEcCcE----------EEEEEEec
Confidence 489999999999999999999877654 22333322 1110000 000111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cC---CeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WK---KKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~---~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.|+ +++..++..|+++++++|+|+|..+..+..+. .|++.+.. .+ .-+++|.||.|+... .++...-
T Consensus 79 AGQ----ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk----rqvs~eE 150 (221)
T KOG0094|consen 79 AGQ----ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK----RQVSIEE 150 (221)
T ss_pred ccH----HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch----hhhhHHH
Confidence 997 78899999999999999999999987766654 57777654 22 457789999999965 1221111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.....+ +..+..+||+.|
T Consensus 151 g~~kAkel---~a~f~etsak~g 170 (221)
T KOG0094|consen 151 GERKAKEL---NAEFIETSAKAG 170 (221)
T ss_pred HHHHHHHh---CcEEEEecccCC
Confidence 12222222 357888999988
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.20 E-value=1.2e-10 Score=142.21 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+...+|+|+|+.++|||||+|+|+...-............+ +.+....+..+..........+.+.. ..+++||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~---~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liD 79 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAA---TMDWMEQEQERGITITSAATTCFWKG---HRINIID 79 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCcc---ccCCChhHhhcCCCccceeEEEEECC---EEEEEEc
Confidence 35678999999999999999999853211100000000000 11111111222222222222222211 3589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||+.. +...+...+..+|++|+|+|+..+...++..++..+...+.|+|+++||+|+... +...+.+.+++.+
T Consensus 80 TPG~~~----f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~--~~~~~~~~i~~~l 153 (691)
T PRK12739 80 TPGHVD----FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA--DFFRSVEQIKDRL 153 (691)
T ss_pred CCCHHH----HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHh
Confidence 999743 2234777888999999999999988888888999998889999999999999854 3455555555544
Q ss_pred HHhhCCCCCeEEEecccchHH
Q 002437 522 MKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~ 542 (921)
... ....++|+|+..++.
T Consensus 154 ~~~---~~~~~iPis~~~~f~ 171 (691)
T PRK12739 154 GAN---AVPIQLPIGAEDDFK 171 (691)
T ss_pred CCC---ceeEEecccccccce
Confidence 321 224577889877654
No 258
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.6e-10 Score=112.85 Aligned_cols=144 Identities=22% Similarity=0.354 Sum_probs=98.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..|+|||||+-.+...++.+. ..||+...-...-- ...+.. -.+.||||
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv-----------~~~~~~----------ikfeIWDT 61 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTV-----------TVDDNT----------IKFEIWDT 61 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEE-----------EeCCcE----------EEEEEEEc
Confidence 358999999999999999999988776532 33444321111000 000111 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCe-EE--EEEeCCCCCCC-hHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKK-VV--FVLNKSDLYQN-AFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~-vi--vVlNK~D~~~~-~~~~~~v~~~~ 517 (921)
.|. +++..+..-|++.|+++|+|+|.++..+.... .+++.|.+...| ++ +|.||+|+... .-+.+++..+.
T Consensus 62 AGQ----ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA 137 (200)
T KOG0092|consen 62 AGQ----ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYA 137 (200)
T ss_pred CCc----ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHH
Confidence 997 56778888999999999999999987666554 477888765544 44 59999999863 22334443332
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....+|.+||+++
T Consensus 138 e~--------~gll~~ETSAKTg 152 (200)
T KOG0092|consen 138 ES--------QGLLFFETSAKTG 152 (200)
T ss_pred Hh--------cCCEEEEEecccc
Confidence 22 4578999999998
No 259
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.18 E-value=8.8e-11 Score=124.75 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=108.8
Q ss_pred chHHHHHHHHhcCCcEE--EEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIV--VLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~v--qlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++++++.|++.| |+|.+..+..+..+.+.++.++|++ +.++|+++++ +|+|+++.
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--------~g~~~~~~--------- 139 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--------RGPAVKNE--------- 139 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--------cCCcccCc---------
Confidence 55567999999999877 9999998888899999999999999 9999998776 49999771
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCc-------c
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPL-------V 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~-------~ 247 (921)
+ ++|..+. ++.| .+.|||||.+++.+ +++ .+++++.+++||+++||++. +
T Consensus 140 -~---------------~~~~i~~~~~~a-~~~GaD~Ik~~~~~----~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~ 198 (235)
T cd00958 140 -K---------------DPDLIAYAARIG-AELGADIVKTKYTG----DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLK 198 (235)
T ss_pred -c---------------CHHHHHHHHHHH-HHHCCCEEEecCCC----CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHH
Confidence 0 2345554 5556 68899999996432 455 57888889999999999965 5
Q ss_pred ChHHHHHcCCcEEEEeecccccch
Q 002437 248 DVSKFLKSGASGFVISLEDLSLFN 271 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~~~ 271 (921)
++.++.++||+||++.++.+..-.
T Consensus 199 ~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 199 MVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHHHHHHcCCcEEEechhhhcCCC
Confidence 589999999999999888876543
No 260
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.17 E-value=1.4e-10 Score=121.64 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=116.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
++.+..+....+|++.+++=+-+..-..-.+..+.+++.+ +.++++-+ .++.+.+.|||||||+..+++...
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~ 109 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQ 109 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHH
Confidence 6778888888999999987432111111123444444444 34555433 688899999999999999998766
Q ss_pred HHHhcccCCCCccccCeEEE----ecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhc--CCCCEEEEcCC
Q 002437 174 ARNTMKDSMSESVVLPLVGR----NVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTN--VKIPIFIMNAS 244 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~----S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~--~~~Pv~aiGGi 244 (921)
.+.+.. .. . .+|. .||+.+++.++ .+.|+||+++++. +...+++. ...+++. .++||+|.|||
T Consensus 110 ~~~~~~---~~-~---~~g~~~~v~v~~~~e~~~~-~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI 181 (217)
T cd00331 110 LKELYE---LA-R---ELGMEVLVEVHDEEELERA-LALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGI 181 (217)
T ss_pred HHHHHH---HH-H---HcCCeEEEEECCHHHHHHH-HHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCC
Confidence 666642 11 1 2344 47999999999 8999999999987 33344554 4667666 46899999999
Q ss_pred C-ccChHHHHHcCCcEEEEeecccccc
Q 002437 245 P-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 245 ~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+ ++|+.++.++||+||++.+|.++.-
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 6 5999999999999999999987753
No 261
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=99.17 E-value=5.2e-11 Score=127.95 Aligned_cols=131 Identities=12% Similarity=0.193 Sum_probs=101.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++.+++.|++.||+|.|.. +..++.+.+.++.++|++ |++|++. ..++|+|+++.+
T Consensus 91 ~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~--------~~~~Gvh~~~~~-------- 154 (258)
T TIGR01949 91 RIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM--------MYPRGPHIDDRD-------- 154 (258)
T ss_pred eeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE--------EeccCccccccc--------
Confidence 355779999999999999999944 456788899999999998 9999982 227899997621
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCC-------cc
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASP-------LV 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~-------~~ 247 (921)
++...+ ++.| .+.|||||.++- + .|+. .+.+++..++||+|+|||+ .+
T Consensus 155 ------------------~~~~~~~~~~a-~~~GADyikt~~--~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~ 211 (258)
T TIGR01949 155 ------------------PELVAHAARLG-AELGADIVKTPY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQ 211 (258)
T ss_pred ------------------HHHHHHHHHHH-HHHCCCEEeccC--C--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHH
Confidence 112223 3455 578999999862 2 3454 5778888899999999998 66
Q ss_pred ChHHHHHcCCcEEEEeeccccc
Q 002437 248 DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++.+++++||.|++++++.++.
T Consensus 212 ~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 212 MIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHcCCcEEehhhHhhcC
Confidence 8999999999999888887765
No 262
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.16 E-value=4.6e-10 Score=116.32 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+.|+++|.+++|||||++.|.+.++..+ ..+++.....+..... ..+ ..+.||||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~~-----------~~~-----------~~~~l~D~pG 57 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNSE-----------GKG-----------KKFRLVDVPG 57 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeecC-----------CCC-----------ceEEEEECCC
Confidence 4689999999999999999998765332 1112111111111000 000 2489999999
Q ss_pred CChhhhHHHHHHHHhcCCC-CEEEEEEeCCCCC-CHHH-HHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRA-DLVLFVISADRPL-TESE-VVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~a-D~il~V~da~~~~-t~~e-~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.. +.......++..+ +++|||+|+.... +..+ ..++..+ ...+.|+++|+||+|+... ...+.+++
T Consensus 58 ~~----~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a-~~~~~i~~ 132 (203)
T cd04105 58 HP----KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA-KPAKKIKE 132 (203)
T ss_pred CH----HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc-CCHHHHHH
Confidence 74 3445567778888 9999999998752 1111 2233222 1246899999999998754 22234444
Q ss_pred HHHHHH
Q 002437 516 FVKENT 521 (921)
Q Consensus 516 ~~~~~~ 521 (921)
.+...+
T Consensus 133 ~le~ei 138 (203)
T cd04105 133 QLEKEL 138 (203)
T ss_pred HHHHHH
Confidence 444433
No 263
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.15 E-value=4.2e-10 Score=111.96 Aligned_cols=140 Identities=29% Similarity=0.409 Sum_probs=90.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+|+|..++|||||++.+.+..+. ....||.. +........ ++.. -.+.++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~D~~g 57 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSI-------------DGKP---------VNLEIWDTSG 57 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEE-------------TTEE---------EEEEEEEETT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccc-------------cccc---------cccccccccc
Confidence 6899999999999999999987653 34445441 211111111 0110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCC-hHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQN-AFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~-~~~~~~v~~~~~~ 519 (921)
.. .+......++..+|++|+|+|.+++.+..... ++..+.. ...|+++|.||.|+... .-..++..+..++
T Consensus 58 ~~----~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~ 133 (162)
T PF00071_consen 58 QE----RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKE 133 (162)
T ss_dssp SG----GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHH
T ss_pred cc----cccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHH
Confidence 63 34455667789999999999998765544443 4455443 34799999999998752 1112222222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+++.+||+.+
T Consensus 134 --------~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 134 --------LGVPYFEVSAKNG 146 (162)
T ss_dssp --------TTSEEEEEBTTTT
T ss_pred --------hCCEEEEEECCCC
Confidence 2378999999886
No 264
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.14 E-value=1.8e-08 Score=108.58 Aligned_cols=148 Identities=20% Similarity=0.361 Sum_probs=97.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC----CCCCc--cceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD----GVVPT--TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~----~~~~t--T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.-.|+|+++|+.|.|||||||.|++..+... +..+. ...+....+.. ....+|.- -
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~---------~l~e~~~~---------~ 82 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA---------ELEEDGFH---------L 82 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee---------eeecCCeE---------E
Confidence 5679999999999999999999999844322 11111 11111111111 11122221 1
Q ss_pred ccEEEeCCCCChhhhH---H-------HHHHHHhc--------------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVILQR---Q-------QRLTEEFV--------------PRADLVLFVISAD-RPLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~---~-------~~~~~~~l--------------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~ 490 (921)
+++++||||+++.... + ......|+ .+.|++||.+... +.+..-+.++++.+.+.
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~ 162 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR 162 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999753111 0 11122222 3578999999754 67899999999998864
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 533 (921)
.++|.|+.|+|.. +.+++...++.+++.+... ..+||
T Consensus 163 -vNlIPVI~KaD~l-T~~El~~~K~~I~~~i~~~----nI~vf 199 (373)
T COG5019 163 -VNLIPVIAKADTL-TDDELAEFKERIREDLEQY----NIPVF 199 (373)
T ss_pred -cCeeeeeeccccC-CHHHHHHHHHHHHHHHHHh----CCcee
Confidence 7999999999999 5578888888888877653 45555
No 265
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.14 E-value=1.9e-09 Score=111.25 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=81.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+|+++|..++|||||++.+.+..+.. ...||... + ..+.+... .+++.. -.+.|||
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~----------~~~~~~---------~~l~IwD 60 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEG----------TPEEKT---------FFVELWD 60 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCC----------CCCCcE---------EEEEEEe
Confidence 379999999999999999999887643 33444432 1 11111110 011111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----------------------cCCeEEEEE
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----------------------WKKKVVFVL 498 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----------------------~~~~vivVl 498 (921)
|+|. +++..+...+++.+|++|+|+|.+++.+..... |+..+.. ...|+++|.
T Consensus 61 taG~----e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVG 136 (202)
T cd04102 61 VGGS----ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIG 136 (202)
T ss_pred cCCc----hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEE
Confidence 9997 456677888999999999999999887776664 5555532 246999999
Q ss_pred eCCCCCC
Q 002437 499 NKSDLYQ 505 (921)
Q Consensus 499 NK~D~~~ 505 (921)
||+|+..
T Consensus 137 nK~Dl~~ 143 (202)
T cd04102 137 TKLDQIP 143 (202)
T ss_pred ECccchh
Confidence 9999864
No 266
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.14 E-value=8.4e-10 Score=121.25 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=60.7
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC---cc-chhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL---AS-EEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
|+++|.+|+|||||+|+|++......+..+||..++....... +. .....+ ....|.. ....-.-.+.++||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~-~~~~~~~---~~~~~~v~i~l~D~ 76 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSC-NPRYGKC---IDGKRYVPVELIDV 76 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhh-ccccccc---ccCcCcceEEEEEC
Confidence 5799999999999999999988766677777766654322110 00 000000 0000000 00000014899999
Q ss_pred CCCChhhhHHH---HHHHHhcCCCCEEEEEEeCC
Q 002437 443 PGTNVILQRQQ---RLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 443 PG~~~~~~~~~---~~~~~~l~~aD~il~V~da~ 473 (921)
||+.....+.. ......++.||++++|+|+.
T Consensus 77 aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 77 AGLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 99842222222 33445689999999999996
No 267
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=9.1e-10 Score=107.23 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=100.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC----------CCccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV----------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~----------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
...+|+|+|..++||||++.++.......+.. .+||.... .|.+..+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D-------------------~g~~~~~~~-- 67 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMD-------------------FGSIELDED-- 67 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeec-------------------ccceEEcCc--
Confidence 35799999999999999999998876422111 11222111 111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHH
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~ 511 (921)
..+.|+||||. +++.-++.-+++.++..|+++|++.+.+..+..++..+.... .|+++.+||.|+.... -.+
T Consensus 68 --~~v~LfgtPGq----~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~-ppe 140 (187)
T COG2229 68 --TGVHLFGTPGQ----ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL-PPE 140 (187)
T ss_pred --ceEEEecCCCc----HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC-CHH
Confidence 25899999997 678888889999999999999999999887777777776655 8999999999997642 123
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+.+...+ ...+++.++|.++
T Consensus 141 ~i~e~l~~~~------~~~~vi~~~a~e~ 163 (187)
T COG2229 141 KIREALKLEL------LSVPVIEIDATEG 163 (187)
T ss_pred HHHHHHHhcc------CCCceeeeecccc
Confidence 3333333211 3588999999865
No 268
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.6e-10 Score=110.92 Aligned_cols=145 Identities=18% Similarity=0.301 Sum_probs=98.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..|+|.++|..|+|||-|+-.+.+..+.. ....|-. ++.... ..-+|..+ .+.+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt-------------~e~~gk~i---------KlQIW 63 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRT-------------VELDGKTI---------KLQIW 63 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEE-------------eeecceEE---------EEEee
Confidence 457999999999999999999999887642 2221111 111110 11122211 48999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|. +++..++..|++.|+.||+|+|.+...+.... +|+..+.+. +.|.++|.||+|+.... .+...
T Consensus 64 DTAGQ----ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~----~v~~~ 135 (205)
T KOG0084|consen 64 DTAGQ----ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR----VVSTE 135 (205)
T ss_pred ecccc----HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe----ecCHH
Confidence 99997 78889999999999999999999976666655 477777663 35899999999987541 11111
Q ss_pred HHHHHHHhhCCCCCe-EEEecccch
Q 002437 517 VKENTMKLLNIENVT-IYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~-v~~vSA~~~ 540 (921)
..+.+... .+.+ ++.+||+.+
T Consensus 136 ~a~~fa~~---~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 136 EAQEFADE---LGIPIFLETSAKDS 157 (205)
T ss_pred HHHHHHHh---cCCcceeecccCCc
Confidence 11222222 3355 999999987
No 269
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.12 E-value=5.9e-10 Score=120.52 Aligned_cols=138 Identities=24% Similarity=0.357 Sum_probs=86.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCC--CCC------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDG--VVP------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~--~~~------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.++|+|+|.+|+|||||||.|++..+.+.. ..+ .|..+...... ...+|.. -
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------l~e~~~~---------l 63 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVE-----------LEENGVK---------L 63 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEE-----------EEETCEE---------E
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEE-----------eccCCcc---------e
Confidence 489999999999999999999998766543 111 11111111110 1112211 1
Q ss_pred ccEEEeCCCCChhhh--------------HHHHHHHHhc---------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVILQ--------------RQQRLTEEFV---------PRADLVLFVISAD-RPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~--------------~~~~~~~~~l---------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~ 491 (921)
.+++|||||+++... ++.....+-. .+.|++||+++.+ +.+...+.++++.|...
T Consensus 64 ~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~- 142 (281)
T PF00735_consen 64 NLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR- 142 (281)
T ss_dssp EEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-
T ss_pred EEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-
Confidence 589999999864211 1111111111 3578999999986 56889999999999875
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
.++|.|+.|+|... .+++...+..+.+.+..
T Consensus 143 vNvIPvIaKaD~lt-~~el~~~k~~i~~~l~~ 173 (281)
T PF00735_consen 143 VNVIPVIAKADTLT-PEELQAFKQRIREDLEE 173 (281)
T ss_dssp SEEEEEESTGGGS--HHHHHHHHHHHHHHHHH
T ss_pred ccEEeEEecccccC-HHHHHHHHHHHHHHHHH
Confidence 78999999999995 67888888888887765
No 270
>PTZ00258 GTP-binding protein; Provisional
Probab=99.10 E-value=1.6e-09 Score=121.26 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=68.7
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~ 438 (921)
+....++|+++|.||+|||||+|+|++.+....+..+||..+........+......... +-|... ...+.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~--------~~~~~~~~aqi~ 88 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKH--------FKPKSIVPAQLD 88 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHH--------cCCcccCCCCeE
Confidence 446778999999999999999999999988777788888766654432211110000000 000000 02489
Q ss_pred EEeCCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 439 IVDTPGTNVIL---QRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 439 lvDTPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
++||||+.... ..........++.+|++++|+|+.
T Consensus 89 lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 89 ITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred EEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 99999985221 223334556678999999999984
No 271
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.10 E-value=1.7e-10 Score=108.56 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=66.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+|+|+|..|+||||||+.|.+....+ ....+.+............ ..+.++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~d 56 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR------------------------QSLQFWD 56 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE------------------------EEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc------------------------eEEEEEe
Confidence 58999999999999999999887651 1111222111111111000 1278999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HH---HHHhhh--cCCeEEEEEeCCC
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VF---LRYTQQ--WKKKVVFVLNKSD 502 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~---l~~l~~--~~~~vivVlNK~D 502 (921)
++|.... ......++..+|++++|+|.+++.+.... ++ +..+.. ...|+++|.||.|
T Consensus 57 ~~g~~~~----~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 57 FGGQEEF----YSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ESSSHCH----HCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcccee----cccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9997322 22223337889999999999976655553 23 344433 3489999999998
No 272
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.10 E-value=4.3e-10 Score=104.20 Aligned_cols=143 Identities=21% Similarity=0.342 Sum_probs=93.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+.+.++|-.++|||||+|.+....+. ....|| ..+....++. |.+ .+.++|.|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~-edmipt-vGfnmrk~tk--------------gnv----------tiklwD~g 73 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL-EDMIPT-VGFNMRKVTK--------------GNV----------TIKLWDLG 73 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch-hhhccc-ccceeEEecc--------------Cce----------EEEEEecC
Confidence 478999999999999999988754432 223333 3334443332 221 38899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC----CHHHHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPL----TESEVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~----t~~e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|. +.+..++..|++.+|+++||+|+.++. +.+|+. +|..-.-.+.|++++.||.|+...-+.. ++...+
T Consensus 74 Gq----~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~-~li~rm- 147 (186)
T KOG0075|consen 74 GQ----PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI-ALIERM- 147 (186)
T ss_pred CC----ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH-HHHHHh-
Confidence 97 678889999999999999999998754 233332 2222233678999999999998653221 111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.. +...++-+|.+|+++.
T Consensus 148 -gL~s-itdREvcC~siScke~ 167 (186)
T KOG0075|consen 148 -GLSS-ITDREVCCFSISCKEK 167 (186)
T ss_pred -Cccc-cccceEEEEEEEEcCC
Confidence 1111 1224677899999874
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=1.5e-09 Score=122.92 Aligned_cols=102 Identities=20% Similarity=0.128 Sum_probs=63.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCc---c-chhhccc----ccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLA---S-EEQQRCE----RHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~---~-~~~~~~~----~~~~g~~~~~~p~~~l~ 435 (921)
+++|+++|.+|+|||||+|+|++.+....++.+||..++........ . .....+. ...++.. .-
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~--------~~ 72 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTR--------FI 72 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcc--------ee
Confidence 36899999999999999999999987666777788666653221100 0 0000000 0011110 01
Q ss_pred ccEEEeCCCCChhhhH---HHHHHHHhcCCCCEEEEEEeCC
Q 002437 436 EMIIVDTPGTNVILQR---QQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~---~~~~~~~~l~~aD~il~V~da~ 473 (921)
.+.++||||+.....+ ........++.+|++++|+|+.
T Consensus 73 ~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 73 PVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4789999998432222 2223444589999999999996
No 274
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.8e-09 Score=107.68 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+++|.+++|||+++-.+....+.+.- .+|-.+.. .. +. ..-+|.. -.+.+|
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDF---k~-------kt-i~l~g~~---------i~lQiW 66 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDF---KI-------KT-IELDGKK---------IKLQIW 66 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEE---EE-------EE-EEeCCeE---------EEEEEE
Confidence 345789999999999999999999887654221 12211111 00 00 1112221 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|. +++..++..|++.|+.|++|+|..+.-+.++. .|++.+.++ ..|+++|.||+|+... .++...
T Consensus 67 DtaGQ----erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~V~~e 138 (207)
T KOG0078|consen 67 DTAGQ----ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQVSKE 138 (207)
T ss_pred Ecccc----hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----ccccHH
Confidence 99997 78889999999999999999999876655554 477777654 4689999999998753 222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
-.+.+...+ +.+.+.+||+.+
T Consensus 139 ~ge~lA~e~---G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 139 RGEALAREY---GIKFFETSAKTN 159 (207)
T ss_pred HHHHHHHHh---CCeEEEccccCC
Confidence 223333333 488999999997
No 275
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.08 E-value=9.8e-10 Score=126.75 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=100.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--C---C-----CCccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--G---V-----VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~---~-----~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
++.+|+++|+.++|||||+.+|+...-... + . ......+.+..+.+...++.++......+...+.++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-- 83 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-- 83 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC--
Confidence 567899999999999999999974321100 0 0 000000000001121222222222221111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCC-eEEEEEeCCCCC
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKK-KVVFVLNKSDLY 504 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~-~vivVlNK~D~~ 504 (921)
-+.++|+||||. +++...+...+..+|++|+|+|+..+.- .+..+.+..+...+. ++|+++||+|+.
T Consensus 84 -~~~i~liDtPGh----~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 -KYYCTVIDAPGH----RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred -CEEEEEEECCCH----HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 135899999996 4455556777899999999999987421 233445555666676 578899999976
Q ss_pred CC---hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccchH
Q 002437 505 QN---AFELEEAISFVKENTMKLL-NIENVTIYPVSARSTL 541 (921)
Q Consensus 505 ~~---~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~l 541 (921)
.. .+.++++.+.+...+...- .....+++|+||..|.
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD 199 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence 21 3445666666666655431 1235789999999873
No 276
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=99.08 E-value=1.8e-10 Score=122.98 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred ceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCC
Q 002437 143 ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQK 222 (921)
Q Consensus 143 ~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~ 222 (921)
..+|.++|++++ |+.+.++..+|+..+ |+ + .||+||||.+|+.+| .+.|+|||.|+|++.
T Consensus 150 ~ilikdnHi~~~----------G~~~~av~~~r~~~~---~~-~---~Igvev~t~eea~~A-~~~gaDyI~ld~~~~-- 209 (265)
T TIGR00078 150 AVMIKDNHIAAA----------GSIEKAVKRARAAAP---FA-L---KIEVEVESLEEAEEA-AEAGADIIMLDNMKP-- 209 (265)
T ss_pred ceeeeccHHHHh----------CCHHHHHHHHHHhCC---CC-C---eEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--
Confidence 457888887766 445668889999885 55 3 699999999999999 899999999999822
Q ss_pred CCcchhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeeccc
Q 002437 223 ADVIENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 223 ~g~~~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
.. .+++.+.. .+|++|+|||+++|+.++.++|+++|++ ++..
T Consensus 210 e~--lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isv-gait 253 (265)
T TIGR00078 210 EE--IKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISS-GALT 253 (265)
T ss_pred HH--HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEe-CHHH
Confidence 11 23334333 3899999999999999999999999988 4443
No 277
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.07 E-value=1.5e-09 Score=125.11 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=80.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
++...+|+++|.+|+||||++|+|+|.+...++. .+.|.....+.... +| ..+.+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i-------------dG-----------~~L~V 170 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV-------------QG-----------VKIRV 170 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE-------------CC-----------ceEEE
Confidence 4455789999999999999999999998665543 34444433322111 11 25899
Q ss_pred EeCCCCChhh------hHHHHHHHHhcC--CCCEEEEEEeCCCCC-CHHHHHHHHHhhhc-----CCeEEEEEeCCCCCC
Q 002437 440 VDTPGTNVIL------QRQQRLTEEFVP--RADLVLFVISADRPL-TESEVVFLRYTQQW-----KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 440 vDTPG~~~~~------~~~~~~~~~~l~--~aD~il~V~da~~~~-t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~ 505 (921)
|||||+.+.. ......+..++. .+|+||||...+... ..++...++.+... -..+|||+|++|..+
T Consensus 171 IDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 171 IDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred EECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 9999997532 111222333443 589999999876332 33566677777542 268999999999986
Q ss_pred C
Q 002437 506 N 506 (921)
Q Consensus 506 ~ 506 (921)
+
T Consensus 251 p 251 (763)
T TIGR00993 251 P 251 (763)
T ss_pred C
Confidence 3
No 278
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.07 E-value=1.7e-08 Score=110.98 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHHCC------CCCCCCCCCccceeE
Q 002437 330 ERSVLLEAIDVIKKASPLMEEVSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALLGK------RYLKDGVVPTTNEIT 402 (921)
Q Consensus 330 ~~~~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLlg~------~~~~~~~~~tT~~~~ 402 (921)
+++.+.+.+..+++..+... .+.+.. ........|+|+|.+|+|||||++.|... ++...+..|.+....
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~ 78 (300)
T TIGR00750 2 NRRALARAITLVENRHPEAK---QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTG 78 (300)
T ss_pred CHHHHHHHHHHHhCCChHHH---HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcch
Confidence 35677888888887655422 222222 23456789999999999999999998642 222111111110000
Q ss_pred EEEccCCccchhhcccccCCCeEEeecCC-------------------CcccccEEEeCCCCChhhhHHHHHHHHhcCCC
Q 002437 403 FLRFSDLASEEQQRCERHPDGQYICYLPS-------------------PILKEMIIVDTPGTNVILQRQQRLTEEFVPRA 463 (921)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-------------------~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~a 463 (921)
-.-.++. ..........+.++...|. ..-.+++|+||||.+.. ....+..+
T Consensus 79 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~-------e~~i~~~a 148 (300)
T TIGR00750 79 GSILGDR---TRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS-------EVDIANMA 148 (300)
T ss_pred hhhcccc---hhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh-------hhHHHHhh
Confidence 0000000 0000000001111111111 01246899999998521 12346678
Q ss_pred CEEEEEEeCCCCCCHHHHHHHH-HhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh---CCCCCeEEEecccc
Q 002437 464 DLVLFVISADRPLTESEVVFLR-YTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL---NIENVTIYPVSARS 539 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~-~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~v~~vSA~~ 539 (921)
|.++++.... +..+...+. .+ ..+|.++|+||+|+....+ .......+...+..+. ..+.++++++||++
T Consensus 149 D~i~vv~~~~---~~~el~~~~~~l--~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~ 222 (300)
T TIGR00750 149 DTFVVVTIPG---TGDDLQGIKAGL--MEIADIYVVNKADGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVE 222 (300)
T ss_pred ceEEEEecCC---ccHHHHHHHHHH--hhhccEEEEEcccccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccC
Confidence 9999986543 334433222 22 3578899999999985532 2221111111112111 12335799999988
Q ss_pred hHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 540 TLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 540 ~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .|+++|.+.+.++..
T Consensus 223 g---------------------------~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 223 G---------------------------RGIDELWDAIEEHKT 238 (300)
T ss_pred C---------------------------CCHHHHHHHHHHHHH
Confidence 7 789999888877644
No 279
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.07 E-value=3.1e-09 Score=111.31 Aligned_cols=143 Identities=20% Similarity=0.315 Sum_probs=86.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.++...+. ....||.. ........ ....+.+ .+.++||
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~-~~~~~~~~----------~~~~~~i----------~i~~~Dt 65 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLG-VEVHPLKF----------YTNCGPI----------CFNVWDT 65 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccc-eEEEEEEE----------EECCeEE----------EEEEEEC
Confidence 4579999999999999999866554432 22333322 11111100 0011111 4889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||. .....+...++..+|++++|+|.++..+..+. .++..+.. ...|+++|.||+|+...... .+....
T Consensus 66 ~g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~-~~~~~~--- 137 (215)
T PTZ00132 66 AGQ----EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK-ARQITF--- 137 (215)
T ss_pred CCc----hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC-HHHHHH---
Confidence 996 33445567788899999999999876554443 23444332 34789999999998643111 111111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ....++.+||+++
T Consensus 138 --~~~---~~~~~~e~Sa~~~ 153 (215)
T PTZ00132 138 --HRK---KNLQYYDISAKSN 153 (215)
T ss_pred --HHH---cCCEEEEEeCCCC
Confidence 111 2367899999887
No 280
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.06 E-value=9.4e-10 Score=129.04 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCC--ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~--tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+..+|+|+|.+++|||||+++|+.. .+...+... .+...+...+. ..+.++..........+.+. -..+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~---~~E~~rgisi~~~~~~~~~~---~~~i 82 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWM---EMEKQRGISITTSVMQFPYR---DCLV 82 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCC---HHHHhcCCcEEEEEEEEeeC---CeEE
Confidence 45689999999999999999998632 221111110 00001111111 11111111111110111111 1258
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.++||||.. .+...+..++..+|++|+|+|+..........+++.+...+.|+++++||+|+... +..++.+.+
T Consensus 83 nliDTPG~~----df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~--~~~~ll~~i 156 (527)
T TIGR00503 83 NLLDTPGHE----DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR--DPLELLDEV 156 (527)
T ss_pred EEEECCChh----hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC--CHHHHHHHH
Confidence 999999974 33344666788999999999999877766667777777788999999999998643 233444444
Q ss_pred HHHHHHhhCCCCCeEEEecc
Q 002437 518 KENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA 537 (921)
+..+.. ...+.++|+..
T Consensus 157 ~~~l~~---~~~~~~~PIg~ 173 (527)
T TIGR00503 157 ENELKI---NCAPITWPIGC 173 (527)
T ss_pred HHHhCC---CCccEEEEecC
Confidence 443321 12345677744
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=119.26 Aligned_cols=170 Identities=20% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC--CCC----------CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR--YLK----------DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~----------~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+++|+|+..+|||||+-.|+-+- +.+ ......+-.+..+ -+...++.++......+...+..+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawv--lD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWV--LDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEE--ecCChhHHhcceEEEEEEEEeecC
Confidence 56789999999999999999987431 110 0011122222221 122222333333322222211111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhc-CCeEEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQW-KKKVVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~-~~~vivVlNK~D 502 (921)
. ..++|+|+||.- .+..-+..-...||+.|+|+|+..+ ...+..+.+-.++-. ...+|+++||+|
T Consensus 84 k---~~~tIiDaPGHr----dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 84 K---YNFTIIDAPGHR----DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred C---ceEEEeeCCchH----HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccc
Confidence 1 258999999953 2222233445789999999999876 333333333333333 367999999999
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHhhCCC--CCeEEEecccchHH
Q 002437 503 LYQ-NAFELEEAISFVKENTMKLLNIE--NVTIYPVSARSTLE 542 (921)
Q Consensus 503 ~~~-~~~~~~~v~~~~~~~~~~~~~~~--~~~v~~vSA~~~l~ 542 (921)
..+ +++..+++...+.. +.+.++.. +++++|||+..|-+
T Consensus 157 ~v~wde~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 157 LVSWDEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred ccccCHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCc
Confidence 984 45568888888877 55555543 58899999999843
No 282
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.06 E-value=6.9e-10 Score=107.23 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=98.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
...++|.+.|.+|+|||||+|.+...++.. .|....|.++.+ ++.. ..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V------------------d~~~---------vt 59 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV------------------DDRS---------VT 59 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE------------------cCeE---------EE
Confidence 356899999999999999999999876532 333344443322 1221 14
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-----HHHHhhhc---CCeEEEEEeCCCCCCChH
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-----FLRYTQQW---KKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-----~l~~l~~~---~~~vivVlNK~D~~~~~~ 508 (921)
+.||||.|. +++..+-..+++.||..++|+|.+.+.+...++ ||.+.... .-|.|++.||+|.....+
T Consensus 60 lQiWDTAGQ----ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~ 135 (210)
T KOG0394|consen 60 LQIWDTAGQ----ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS 135 (210)
T ss_pred EEEEecccH----HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc
Confidence 899999997 677777888899999999999999876665553 55555433 348999999999976321
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
. ....+..+..+.. ..+.|.|.+||+.+.
T Consensus 136 r-~VS~~~Aq~WC~s---~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 136 R-QVSEKKAQTWCKS---KGNIPYFETSAKEAT 164 (210)
T ss_pred c-eeeHHHHHHHHHh---cCCceeEEecccccc
Confidence 1 1111112222222 246899999999874
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.05 E-value=2.5e-09 Score=132.87 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=97.4
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------ 432 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------ 432 (921)
...++..+|+|+|+.++|||||+++|+...-........+ ..+.+....+..+........+.+.+...
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCc-----eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 3445678999999999999999999986542211111100 11222222233333333333333333210
Q ss_pred -------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 433 -------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 433 -------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
-...++||||||..+ +...+...+..+|.+|+|+|+..+........++.+...+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~inliDtPGh~d----F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVD----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred cccccCCCceEEEEECCCCHHH----HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccc
Confidence 012478999999743 333356667899999999999999888888889999899999999999999872
Q ss_pred C-----h----HHHHHHHHHHH
Q 002437 506 N-----A----FELEEAISFVK 518 (921)
Q Consensus 506 ~-----~----~~~~~v~~~~~ 518 (921)
. . .++..+++.++
T Consensus 165 ~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 165 LELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred hhhcCCHHHHHHHHHHHHHHHH
Confidence 1 1 34555666655
No 284
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.04 E-value=1.6e-09 Score=127.09 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCC-cc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVP-TT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~-tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...+|+++|+.++|||||+++|+.. .+...+... ++ ...+...+ ...+.++..........+.+. ...++
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~---~~~E~~rgiSi~~~~~~~~~~---~~~in 82 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDW---MEMEKQRGISVTSSVMQFPYR---DCLIN 82 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCC---cHHHHhhCCceeeeeEEEEEC---CEEEE
Confidence 5679999999999999999999732 221111110 00 01010111 111111221111111111111 02489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+|||||..+ +...+..++..+|++|+|+|+..+.......+++.+...+.|+++++||+|+... +..++.+.++
T Consensus 83 liDTPG~~d----f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a--~~~~~l~~i~ 156 (526)
T PRK00741 83 LLDTPGHED----FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR--EPLELLDEIE 156 (526)
T ss_pred EEECCCchh----hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc--CHHHHHHHHH
Confidence 999999743 3334666778999999999999887777777888887889999999999998754 2334444444
Q ss_pred HH
Q 002437 519 EN 520 (921)
Q Consensus 519 ~~ 520 (921)
+.
T Consensus 157 ~~ 158 (526)
T PRK00741 157 EV 158 (526)
T ss_pred HH
Confidence 33
No 285
>PTZ00416 elongation factor 2; Provisional
Probab=99.04 E-value=2.7e-09 Score=132.28 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=99.9
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------ 432 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------ 432 (921)
...+...+|+|+|+.++|||||+++|+...-........+ + .+.+....+.++........+.+.+...
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~---~--~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGD---A--RFTDTRADEQERGITIKSTGISLYYEHDLEDGDD 88 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCc---e--eecccchhhHhhcceeeccceEEEeecccccccC
Confidence 3445667999999999999999999997532211111111 0 1112222223333333322222222210
Q ss_pred -cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC----C-C
Q 002437 433 -ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY----Q-N 506 (921)
Q Consensus 433 -~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~----~-~ 506 (921)
--..++|+||||.... ...+...+..+|++|+|+|+..+.......+++.+...+.|+|+++||+|+. . +
T Consensus 89 ~~~~~i~liDtPG~~~f----~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~ 164 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDF----SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLD 164 (836)
T ss_pred CCceEEEEEcCCCHHhH----HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCC
Confidence 0123899999998533 3335677799999999999999888888889999988889999999999997 2 1
Q ss_pred h----HHHHHHHHHHHHHHH
Q 002437 507 A----FELEEAISFVKENTM 522 (921)
Q Consensus 507 ~----~~~~~v~~~~~~~~~ 522 (921)
+ ..+..+++.++..+.
T Consensus 165 ~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 165 PEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 1 345666666666554
No 286
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.04 E-value=3.3e-10 Score=121.26 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=81.3
Q ss_pred ceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCC
Q 002437 143 ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQK 222 (921)
Q Consensus 143 ~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~ 222 (921)
..+|.++|++++. |+ +.+...+|+..+ ++ + .||+||||.+|+.+| .+.|||||.+||++
T Consensus 154 ~vlikdnHi~~~g-----~i-----~~~v~~~r~~~~---~~-~---~Igvev~s~eea~~A-~~~gaDyI~ld~~~--- 212 (268)
T cd01572 154 AVLIKDNHIAAAG-----SI-----TEAVRRARAAAP---FT-L---KIEVEVETLEQLKEA-LEAGADIIMLDNMS--- 212 (268)
T ss_pred eeeeehHHHHHhC-----CH-----HHHHHHHHHhCC---CC-C---eEEEEECCHHHHHHH-HHcCCCEEEECCcC---
Confidence 4577788876653 33 557889999885 45 3 699999999999999 89999999999983
Q ss_pred CCcc-hhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 223 ADVI-ENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 223 ~g~~-~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
++ ..++.+.. ++|++|+|||+++|+.++.++|++||++++--
T Consensus 213 --~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~ 257 (268)
T cd01572 213 --PEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALT 257 (268)
T ss_pred --HHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeee
Confidence 23 35555544 69999999999999999999999999887643
No 287
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.1e-09 Score=119.74 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+++|+-+...|||||...|+...-......+.- ++-+.-..+.+|..........+++.+.-..-+++|||
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~------q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE------QVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh------hhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecC
Confidence 456899999999999999999985321110000000 00000011111221111111111111111123899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.-++..+ ..+.+.-||.+|+|+|++++...+....+...-+.+..+|.|+||+|+... +.+.+..++.
T Consensus 133 PGHvDFs~E----VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a--dpe~V~~q~~---- 202 (650)
T KOG0462|consen 133 PGHVDFSGE----VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA--DPERVENQLF---- 202 (650)
T ss_pred CCcccccce----ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC--CHHHHHHHHH----
Confidence 998655433 445567799999999999998888887777777888999999999999764 4455555544
Q ss_pred HhhCCCCCeEEEecccchH
Q 002437 523 KLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l 541 (921)
+++..+..+++.+||++|+
T Consensus 203 ~lF~~~~~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 203 ELFDIPPAEVIYVSAKTGL 221 (650)
T ss_pred HHhcCCccceEEEEeccCc
Confidence 4556667799999999983
No 288
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=1.8e-09 Score=115.67 Aligned_cols=120 Identities=28% Similarity=0.394 Sum_probs=76.8
Q ss_pred ccEEEeCCCCChhhh--HHHHHHHHhcCC--CCEEEEEEeCCCCCCHHHHHHHHHhh-----hcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQ--RQQRLTEEFVPR--ADLVLFVISADRPLTESEVVFLRYTQ-----QWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~--~~~~~~~~~l~~--aD~il~V~da~~~~t~~e~~~l~~l~-----~~~~~vivVlNK~D~~~~ 506 (921)
++.++||||...... .......+++.. +++++||+|+....+..+......+. ..+.|+++|+||+|....
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 689999999754321 111222233333 89999999998766666654333322 467899999999999865
Q ss_pred hHHHHHHHHHHHH------H--------------HHHhhC--CCCCeEEEecccchHHhhcccccccccCcccccccCcc
Q 002437 507 AFELEEAISFVKE------N--------------TMKLLN--IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSH 564 (921)
Q Consensus 507 ~~~~~~v~~~~~~------~--------------~~~~~~--~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~ 564 (921)
++.+...+.+.. . +.+.+. ....+++++|++.+
T Consensus 178 -~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~------------------------ 232 (253)
T PRK13768 178 -EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG------------------------ 232 (253)
T ss_pred -hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC------------------------
Confidence 333444443331 1 101111 12357899998875
Q ss_pred ccccchHHHHHHHHHhhcc
Q 002437 565 WRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 565 ~~~sg~~~L~~~l~~~l~~ 583 (921)
.|+++|.++|.+++..
T Consensus 233 ---~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 233 ---EGFDELYAAIQEVFCG 248 (253)
T ss_pred ---cCHHHHHHHHHHHcCC
Confidence 7999999999998865
No 289
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.7e-09 Score=101.16 Aligned_cols=144 Identities=23% Similarity=0.277 Sum_probs=98.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+++.++|.+|+|||.|+-.++...+.|... .|-. +.|+... ....+.++ .+.+|||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiG---vefg~r~-------~~id~k~I----------KlqiwDt 62 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIG---VEFGARM-------VTIDGKQI----------KLQIWDT 62 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--ceee---eeeceeE-------EEEcCceE----------EEEEEec
Confidence 45899999999999999999999998876433 2221 1222111 11111111 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +.+.+++.+|++.|-.+|+|+|.++..+...+. +|..+++.. .-++++.||+|+....+ .-++...+.
T Consensus 63 aGq----e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA 138 (216)
T KOG0098|consen 63 AGQ----ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFA 138 (216)
T ss_pred CCc----HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHH
Confidence 997 677889999999999999999999887777664 777777653 45677889999976521 112222222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++ .....+.+||+++
T Consensus 139 ~e--------hgLifmETSakt~ 153 (216)
T KOG0098|consen 139 RE--------HGLIFMETSAKTA 153 (216)
T ss_pred HH--------cCceeehhhhhhh
Confidence 21 2456778899887
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.00 E-value=2.2e-09 Score=97.16 Aligned_cols=141 Identities=25% Similarity=0.333 Sum_probs=96.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+++++|..|+|||||.|+|-|...++...+ .++|.+ =-.|||||-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~~d----------------------------~~~IDTPGE 47 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEFND----------------------------KGDIDTPGE 47 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccc-------eeeccC----------------------------ccccCCchh
Confidence 689999999999999999999987643222 122221 236899996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.--.+..-....-...++|++++|-.++++.+.-.-.|+ .-..+|+|-|++|.|+.. +.+++.+.+++.+.
T Consensus 48 y~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~---~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~ea----- 118 (148)
T COG4917 48 YFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFL---DIGVKKVIGVVTKADLAE-DADISLVKRWLREA----- 118 (148)
T ss_pred hhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccc---cccccceEEEEecccccc-hHhHHHHHHHHHHc-----
Confidence 432333333344455899999999999876432211121 223467999999999985 45666666655542
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
| ..+||.+|+... +|+++|.+++..
T Consensus 119 G--a~~IF~~s~~d~---------------------------~gv~~l~~~L~~ 143 (148)
T COG4917 119 G--AEPIFETSAVDN---------------------------QGVEELVDYLAS 143 (148)
T ss_pred C--CcceEEEeccCc---------------------------ccHHHHHHHHHh
Confidence 3 468999999764 789888888764
No 291
>PRK13351 elongation factor G; Reviewed
Probab=98.99 E-value=3.2e-09 Score=130.12 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=92.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...+|+|+|..++|||||+++|+...-............+ +.+....+..+..........+.+. ...+.+|||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~---~~d~~~~e~~r~~ti~~~~~~~~~~---~~~i~liDt 80 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTT---VTDWMPQEQERGITIESAATSCDWD---NHRINLIDT 80 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcc---cCCCCHHHHhcCCCcccceEEEEEC---CEEEEEEEC
Confidence 4579999999999999999999854211100000000000 0000001111111111111222221 135899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||.. ++...+..++..+|++++|+|+..+........+..+...+.|+++|+||+|+... ++....+.++..+
T Consensus 81 PG~~----df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~--~~~~~~~~i~~~l 153 (687)
T PRK13351 81 PGHI----DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA--DLFKVLEDIEERF 153 (687)
T ss_pred CCcH----HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC--CHHHHHHHHHHHH
Confidence 9974 33445778889999999999999888877778888888888999999999998854 4555555555544
No 292
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.99 E-value=3.7e-09 Score=99.53 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=94.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce--eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE--ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|.++|+.|+|||||+-.+....+-+. .|+|-. +..-... -+|.- -.+.||
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~--~~~tIGvDFkvk~m~-------------vdg~~---------~KlaiW 65 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDL--HPTTIGVDFKVKVMQ-------------VDGKR---------LKLAIW 65 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCcc--CCceeeeeEEEEEEE-------------EcCce---------EEEEEE
Confidence 458999999999999999999998876543 344322 1111111 11110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC----CeEEEEEeCCCCCCC-hHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK----KKVVFVLNKSDLYQN-AFELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~----~~vivVlNK~D~~~~-~~~~~~v~ 514 (921)
||.|. +++..++..|++.|-.||+|+|..+..+...++ |++.+.-.. .-.++|.||+|...+ .-+.++-+
T Consensus 66 DTAGq----ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~ 141 (209)
T KOG0080|consen 66 DTAGQ----ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGL 141 (209)
T ss_pred eccch----HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHH
Confidence 99997 788899999999999999999999877766665 455554322 224679999997532 11123333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.++ ...-++.+||++-
T Consensus 142 kfAr~--------h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 142 KFARK--------HRCLFIECSAKTR 159 (209)
T ss_pred HHHHh--------hCcEEEEcchhhh
Confidence 33222 3466788899875
No 293
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.99 E-value=5e-09 Score=114.53 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=120.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+|+-+...|||||++.|+...-.-....... -+..+....+.++....-.....+.|.. -.++||||
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~-----ERvMDSnDlEkERGITILaKnTav~~~~---~~INIvDT 75 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA-----ERVMDSNDLEKERGITILAKNTAVNYNG---TRINIVDT 75 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchh-----hhhcCccchhhhcCcEEEeccceeecCC---eEEEEecC
Confidence 456899999999999999999997532100000000 0111111111222211111000011110 24899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.-++..+ ..+.+.-.|.+++++||..+...+.+-.++..-..+.+.|+|+||+|.... ..+++...+-+.+.
T Consensus 76 PGHADFGGE----VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A--rp~~Vvd~vfDLf~ 149 (603)
T COG1217 76 PGHADFGGE----VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA--RPDEVVDEVFDLFV 149 (603)
T ss_pred CCcCCccch----hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC--CHHHHHHHHHHHHH
Confidence 998666544 556677789999999999988888888888888889999999999998754 34555566555554
Q ss_pred HhhCC---CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 523 KLLNI---ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 523 ~~~~~---~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
++-.. .+.||+.-|++.|.......+. ...+..|.+.|.+.+....
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~-----------------~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDE-----------------ADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCcccc-----------------ccchhHHHHHHHHhCCCCC
Confidence 44222 3688999999998654422221 2347777777777765443
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.1e-09 Score=110.28 Aligned_cols=186 Identities=21% Similarity=0.265 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC------CCCC--CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK------DGVV--PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL 434 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~------~~~~--~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 434 (921)
...+|+++|+...|||||..||.|-.... .+.. --..+...+++.+.... ........+-.+..+..++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~---~~y~~~~~C~~cg~~~~l~ 85 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP---ECYTTEPKCPNCGAETELV 85 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC---cccccCCCCCCCCCCccEE
Confidence 45789999999999999999999853221 0000 00001111111110000 0000000011122223566
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.+.|||.||.. -.-..+.+-..--|..|+|+.++.+. ..+..+.|-.+.-.+ +++++|-||+|++..+..+ +
T Consensus 86 R~VSfVDaPGHe----~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~Al-E 160 (415)
T COG5257 86 RRVSFVDAPGHE----TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERAL-E 160 (415)
T ss_pred EEEEEeeCCchH----HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHH-H
Confidence 889999999952 11111222224458999999998654 223333344343333 6899999999999663222 2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
-.+++++-++-.. .++.||+|+||... -.++.|.++|.+++...
T Consensus 161 ~y~qIk~FvkGt~-Ae~aPIIPiSA~~~---------------------------~NIDal~e~i~~~IptP 204 (415)
T COG5257 161 NYEQIKEFVKGTV-AENAPIIPISAQHK---------------------------ANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHhcccc-cCCCceeeehhhhc---------------------------cCHHHHHHHHHHhCCCC
Confidence 2223332222211 35789999999775 56888888888887643
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=7.7e-09 Score=114.37 Aligned_cols=101 Identities=20% Similarity=0.073 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc-cccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL-KEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l-~~l~lvDTP 443 (921)
++|+++|.||+|||||+|+|++.+....+...||..+........+........ .+-|.... ..+.++|||
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~--------~~~p~~~~~a~i~lvD~p 74 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAE--------IVKPKKIVPATIEFVDIA 74 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHH--------hcCCccccCceEEEEECC
Confidence 689999999999999999999998666667778866654332211110000000 00010001 248999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+..... .........++.+|++++|+|+.
T Consensus 75 GL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 75 GLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 9853222 22234555678999999999984
No 296
>PLN00023 GTP-binding protein; Provisional
Probab=98.97 E-value=7.1e-09 Score=112.28 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=82.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhccccc-CCCeEEeecCCCcccccEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERH-PDGQYICYLPSPILKEMII 439 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~l~~l~l 439 (921)
.++|+|+|..++|||||++.+.+..+. ....||... ...+.+...... ..... .++.. -.+.|
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~pTIG~d~~ik~I~~~~~~~~---~~~ik~d~~k~---------v~LqI 87 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSI-ARPPQTIGCTVGVKHITYGSPGSS---SNSIKGDSERD---------FFVEL 87 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcc-cccCCceeeeEEEEEEEECCcccc---cccccccCCce---------EEEEE
Confidence 579999999999999999999987653 233444322 112222210000 00000 00110 13899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhc---------------CCeEEEEEeCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQW---------------KKKVVFVLNKSDL 503 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~---------------~~~vivVlNK~D~ 503 (921)
|||+|. +.+..+...+++.+|++|+|+|.++..+..+.. +++.+... ..|+++|.||+|+
T Consensus 88 WDTAGq----ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 88 WDVSGH----ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred EECCCC----hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 999996 456677888999999999999999876665553 55666542 3689999999999
Q ss_pred CC
Q 002437 504 YQ 505 (921)
Q Consensus 504 ~~ 505 (921)
..
T Consensus 164 ~~ 165 (334)
T PLN00023 164 AP 165 (334)
T ss_pred cc
Confidence 64
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.97 E-value=6.1e-09 Score=127.91 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=87.1
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-cccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-ILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~l~~l~ 438 (921)
..++..+|+++|+.++|||||+++|+...-....... ...+ +.+....+.++........+.+.|... --..++
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~--g~~~---~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELA--GEQL---ALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhc--Ccce---ecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 4446678999999999999999999854211111000 0001 112222223333333333222222100 012489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
|+||||..+. ...+...+..+|++|+|+|+..+.......++..+...+.|+|+++||+|+..
T Consensus 91 liDtPG~~df----~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 91 LIDTPGHVDF----GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred EEcCCCccCh----HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 9999998543 34466777899999999999988877777788877777788899999999863
No 298
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.97 E-value=8.2e-09 Score=109.78 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=112.8
Q ss_pred HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHh-hc-CceEEecC-------cHHHHHhCCCCeEEcCCCCCCHH
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVV-KD-RALFLIAE-------RVDIAAAVNASGVLLSDQGLPAI 172 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~-~~-~~~~ivnd-------~~dla~~~~a~GvHL~~~~l~~~ 172 (921)
+....+.+.| +.++ -....+..++.+.++++++.+ .. ++.+++|+ ..+.+.+.|+||||++.. .+..
T Consensus 17 ~~~~~~~~~G~ig~i--~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-~~~~ 93 (236)
T cd04730 17 ELAAAVSNAGGLGFI--GAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-PPAE 93 (236)
T ss_pred HHHHHHHhCCCcccc--CCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC-CCHH
Confidence 3344444454 4555 122346778888899998887 33 67889988 588999999999999876 4444
Q ss_pred HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC-CCCC------CCcc-hhhhhhcCCCCEEEEcCC
Q 002437 173 VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG-EGQK------ADVI-ENSLFTNVKIPIFIMNAS 244 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~------~g~~-~~~~~~~~~~Pv~aiGGi 244 (921)
..+.+.. .+ . .++.++|+.+++..+ .+.|+||+.+.+. +..+ ..+. ..++++..++||++.|||
T Consensus 94 ~~~~~~~---~~-i---~~i~~v~~~~~~~~~-~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 94 VVERLKA---AG-I---KVIPTVTSVEEARKA-EAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred HHHHHHH---cC-C---EEEEeCCCHHHHHHH-HHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 4444432 22 2 467889999999988 7899999998553 1111 1122 366677779999999999
Q ss_pred Cc-cChHHHHHcCCcEEEEeeccccc
Q 002437 245 PL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 ~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. +|+.+++++|++||++.++.+..
T Consensus 166 ~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 166 ADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred CCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 87 99999999999999998887765
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.6e-08 Score=106.29 Aligned_cols=184 Identities=24% Similarity=0.260 Sum_probs=112.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC---CCCCCCCccceeEEE-EccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY---LKDGVVPTTNEITFL-RFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~---~~~~~~~tT~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
-.+++++.|...+|||||-.+|..-.. .-..+..+++.++.- .++.-. .......+.|. --+++
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~---v~~parLpq~e---------~lq~t 73 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMT---VLSPARLPQGE---------QLQFT 73 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeee---cccccccCccc---------cceeE
Confidence 347899999999999999999964321 112223333333321 010000 00000111111 01489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC---hHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN---AFELEEAIS 515 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~---~~~~~~v~~ 515 (921)
+||+||..+.. ..+.....-.|+.++|+|+..+...+..+.|-.-...+++.++|+||+|..+. ...+++...
T Consensus 74 lvDCPGHasLI----RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461|consen 74 LVDCPGHASLI----RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred EEeCCCcHHHH----HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH
Confidence 99999964321 22223335679999999998776555555554444567899999999999866 233455555
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
.++..+...--..+.||++||+..|. +...++++|.+.+++.+....
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~-----------------------~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGY-----------------------FKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCc-----------------------cchhHHHHHHHHHHHhhcCCC
Confidence 55555555433356899999998872 234789999999988776544
No 300
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.95 E-value=2.3e-08 Score=104.83 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc--eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN--EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++|+|+|..|+|||||+|+|.+..+.... .+|.. .+........ .. -.+.+|||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~-------------~~----------~~~~~~Dt 61 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLDPAKTIEPYR-------------RN----------IKLQLWDT 61 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC-CCceeeeeEEEEEEeCC-------------CE----------EEEEeecC
Confidence 89999999999999999999998765322 23221 1111111100 00 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHH-HHHHHHhhhc---CCeEEEEEeCCCCCCChHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESE-VVFLRYTQQW---KKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e-~~~l~~l~~~---~~~vivVlNK~D~~~~~~~ 509 (921)
+|+ ++...++..|...++++++|+|..... .... ..+...+... ..|+++|.||+|+......
T Consensus 62 ~gq----~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 62 AGQ----EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred CCH----HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 997 566678899999999999999988622 2222 2345555543 4799999999999876433
No 301
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=6.3e-09 Score=96.50 Aligned_cols=144 Identities=20% Similarity=0.259 Sum_probs=95.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee---EEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI---TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+-.+++.++|..++|||||+-..++..+.+.-+...--.+ ++++. +.. -++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~---------------~kR----------iklQ 73 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS---------------DKR----------IKLQ 73 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec---------------ccE----------EEEE
Confidence 3468999999999999999999999887652111000000 11111 111 1589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v 513 (921)
++||.|. ++...++..|++.++.+|+++|..+..+....+ +..+++ ..+.|+|+|.||+|+....- ..+..
T Consensus 74 iwDTagq----EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g 149 (193)
T KOG0093|consen 74 IWDTAGQ----ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERG 149 (193)
T ss_pred EEecccc----hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHH
Confidence 9999997 567889999999999999999998765544433 444444 35689999999999864310 01111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
+ .+.+.+| ...|..||+...+
T Consensus 150 ~-----~l~~~LG---fefFEtSaK~Nin 170 (193)
T KOG0093|consen 150 R-----QLADQLG---FEFFETSAKENIN 170 (193)
T ss_pred H-----HHHHHhC---hHHhhhccccccc
Confidence 1 2223344 5688999987643
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.93 E-value=1.9e-08 Score=103.21 Aligned_cols=194 Identities=19% Similarity=0.285 Sum_probs=108.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC---CCCC---CCCCCccceeEE-----EEccCCccchhhcccccCCCeEEeec
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK---RYLK---DGVVPTTNEITF-----LRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~---~~~~---~~~~~tT~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...+..|.|+|..|+|||||+..|... +..| .+..|......+ ++-...-.+..+.....|+|.+...+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 446789999999999999999988642 2111 222232221111 11111112233455566777654322
Q ss_pred CCCc---------------ccccEEEeCCCCChh---hhHHHHHHHHhc-CCCCEEEEEEeCCCCCCHHH-----HHHHH
Q 002437 430 PSPI---------------LKEMIIVDTPGTNVI---LQRQQRLTEEFV-PRADLVLFVISADRPLTESE-----VVFLR 485 (921)
Q Consensus 430 p~~~---------------l~~l~lvDTPG~~~~---~~~~~~~~~~~l-~~aD~il~V~da~~~~t~~e-----~~~l~ 485 (921)
+... -.+.+||||||.... .....-++..+. .-.-+|+||+|..+.-.... +..-.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 2100 124899999998422 111111233332 23457889999764322222 22233
Q ss_pred HhhhcCCeEEEEEeCCCCCCChH------HHHHHHHHHHH---------------HHHHhhCCCCCeEEEecccchHHhh
Q 002437 486 YTQQWKKKVVFVLNKSDLYQNAF------ELEEAISFVKE---------------NTMKLLNIENVTIYPVSARSTLEAK 544 (921)
Q Consensus 486 ~l~~~~~~vivVlNK~D~~~~~~------~~~~v~~~~~~---------------~~~~~~~~~~~~v~~vSA~~~l~a~ 544 (921)
.+.+.+.|+|+|+||+|....+- +.+...+.+.+ .+.+++ ...+.+.|||.+|
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY--~~lrtv~VSs~tG---- 249 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY--RSLRTVGVSSVTG---- 249 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH--hhCceEEEecccC----
Confidence 45567889999999999987731 12222222221 112222 3578899999888
Q ss_pred cccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 545 LSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.||++|...+.+.+.+
T Consensus 250 -----------------------~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 -----------------------EGFDDFFTAVDESVDE 265 (366)
T ss_pred -----------------------CcHHHHHHHHHHHHHH
Confidence 7999988888777653
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.92 E-value=6.6e-09 Score=127.31 Aligned_cols=138 Identities=19% Similarity=0.135 Sum_probs=83.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~ 438 (921)
......+|+++|+.++|||||+++|+...-...... ........+ ...+.++...........++.... -..++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~--~~~~~~~d~---~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL--AGQQLYLDF---DEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc--CCceeecCC---CHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 344567999999999999999999985321110000 000001111 111111111111111110000001 12589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||||||+.... ..+...+..+|++|+|+|+..+.......++..+...+.|+++|+||+|....
T Consensus 90 liDTPG~~~f~----~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 90 LIDTPGHVDFG----GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred EEeCCCccccH----HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 99999985432 34677889999999999999887777777787777777888999999998743
No 304
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2e-08 Score=100.85 Aligned_cols=149 Identities=23% Similarity=0.336 Sum_probs=95.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
-.|.|+|+|.+|.|||||+|.|....+..++.. |.|..+..+.+.. ..+|. . -
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi-----------eE~gV-k--------l 104 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI-----------EEKGV-K--------L 104 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee-----------eecce-E--------E
Confidence 458999999999999999999987655432222 2233332222211 11221 1 1
Q ss_pred ccEEEeCCCCChh--------------hhHHHHHHHHh--------c--CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVI--------------LQRQQRLTEEF--------V--PRADLVLFVISAD-RPLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~--------------~~~~~~~~~~~--------l--~~aD~il~V~da~-~~~t~~e~~~l~~l~~~ 490 (921)
.++++||||+++. .+.+.+..++. + .+.++++|.+... +.+..-+.+|++.+.+.
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v 184 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV 184 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh
Confidence 5899999999643 12222222222 2 2567899998765 55677888999988764
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.+++-|+-|+|... -++..+.++.+++++... ...+||-.+
T Consensus 185 -vNvvPVIakaDtlT-leEr~~FkqrI~~el~~~----~i~vYPq~~ 225 (336)
T KOG1547|consen 185 -VNVVPVIAKADTLT-LEERSAFKQRIRKELEKH----GIDVYPQDS 225 (336)
T ss_pred -heeeeeEeeccccc-HHHHHHHHHHHHHHHHhc----Ccccccccc
Confidence 68999999999884 456666777777766543 456666544
No 305
>PRK12740 elongation factor G; Reviewed
Probab=98.92 E-value=1.5e-08 Score=123.90 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=83.4
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL 449 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~ 449 (921)
+|++++|||||+|+|+...-............+.. +....+..+..........+.+.. ..+++|||||...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~---d~~~~e~~rgiTi~~~~~~~~~~~---~~i~liDtPG~~~-- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTM---DFMPEERERGISITSAATTCEWKG---HKINLIDTPGHVD-- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccC---CCChHHHhcCCCeeeceEEEEECC---EEEEEEECCCcHH--
Confidence 59999999999999976532211110000000111 111111112111111111111111 2589999999743
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+...+..++..+|++|+|+|++.+.+......+..+...+.|+++|+||+|.... +..++.+.+++.
T Consensus 73 --~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~l~~~ 139 (668)
T PRK12740 73 --FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA--DFFRVLAQLQEK 139 (668)
T ss_pred --HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHH
Confidence 3344667788999999999999888888778888888888999999999998754 334444444443
No 306
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.90 E-value=5.7e-09 Score=108.87 Aligned_cols=160 Identities=9% Similarity=-0.048 Sum_probs=106.8
Q ss_pred chHHHHHHHHhcCCcEEEEe------CCCCCHHHHHHHHHHHHHHhhcC--ceEEecC---cHHHHHhCCCCe--EEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLN------GGEASGKSVYEAACLLKSVVKDR--ALFLIAE---RVDIAAAVNASG--VLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR------~k~~~~~~~~~~a~~l~~~~~~~--~~~ivnd---~~dla~~~~a~G--vHL~~ 166 (921)
.+.+.++.+.+.|++.|++= .++.+ .-.+.++++++.+... +-+++++ .++.+.++|+|| +|..+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~--~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~ 89 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLT--FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA 89 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc--cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 56788888889999999993 23333 2244566666543322 3355655 455777889999 55554
Q ss_pred CCCCHHHHHHh--cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcC--
Q 002437 167 QGLPAIVARNT--MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNV-- 234 (921)
Q Consensus 167 ~~l~~~~~r~~--~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~-- 234 (921)
.+.+....+.+ .| .. . .++.++|+..+..++ ...++||+.++|+ |+... ++. ...+++..
T Consensus 90 ~~~~~~~~~~~~~~g---~~-~---~~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~ 161 (210)
T TIGR01163 90 SEHIHRLLQLIKDLG---AK-A---GIVLNPATPLEFLEY-VLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE 161 (210)
T ss_pred chhHHHHHHHHHHcC---Cc-E---EEEECCCCCHHHHHH-HHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh
Confidence 44333333333 22 23 1 567889987776666 5678999999887 33221 222 23344332
Q ss_pred ---CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 ---KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ---~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++|+++.++.+..
T Consensus 162 ~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 162 NGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 37999999999999999999999999999888754
No 307
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.3e-08 Score=92.74 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
-.|+|+++|..|+|||.|+..++..-+ |.|...|... +..++.+ |.- -.+.|
T Consensus 6 flfkivlvgnagvgktclvrrftqglf-ppgqgatigvdfmiktvev~---------------gek---------iklqi 60 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEVN---------------GEK---------IKLQI 60 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCC-CCCCCceeeeeEEEEEEEEC---------------CeE---------EEEEE
Confidence 458999999999999999999886543 4454444321 1111111 110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|||.|. +++..++..|.+.|+++|+|+|.+...+..-+ +||..+.+ .+.--|+|.||+|+.+. .++-.
T Consensus 61 wdtagq----erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr----revp~ 132 (213)
T KOG0095|consen 61 WDTAGQ----ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR----REVPQ 132 (213)
T ss_pred eeccch----HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh----hhhhH
Confidence 999997 78889999999999999999999865555443 57777754 33446789999998643 34444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+.+.+. .+.-+...||+.+
T Consensus 133 qigeefs~~---qdmyfletsakea 154 (213)
T KOG0095|consen 133 QIGEEFSEA---QDMYFLETSAKEA 154 (213)
T ss_pred HHHHHHHHh---hhhhhhhhcccch
Confidence 554444432 3455667788876
No 308
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.5e-09 Score=103.18 Aligned_cols=147 Identities=23% Similarity=0.290 Sum_probs=101.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..|+|+++|.+++|||-|+..++..++.+.+.. |-.+...... ..-+|..+ ...||
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks--TIGvef~t~t-----------~~vd~k~v---------kaqIW 68 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS--TIGVEFATRT-----------VNVDGKTV---------KAQIW 68 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccccc--ceeEEEEeec-----------eeecCcEE---------EEeee
Confidence 34679999999999999999999998877643322 1111111000 11133322 47899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC---CeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWK---KKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~---~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|+ ++++.++..|.+.|-..++|+|..+..|.+.. +||++|+.+. .++++|.||+|+..- ..+-.
T Consensus 69 DTAGQ----ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l----raV~t- 139 (222)
T KOG0087|consen 69 DTAGQ----ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL----RAVPT- 139 (222)
T ss_pred cccch----hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc----cccch-
Confidence 99997 78888999999999999999999988877766 4888888644 578899999999752 11111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+.+...+...++.+||..+
T Consensus 140 --e~~k~~Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 140 --EDGKAFAEKEGLFFLETSALDA 161 (222)
T ss_pred --hhhHhHHHhcCceEEEeccccc
Confidence 1111122224567889999876
No 309
>PRK06801 hypothetical protein; Provisional
Probab=98.88 E-value=6.2e-09 Score=111.94 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=117.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhc
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTM 178 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~ 178 (921)
..++.+++|+++|.+.||+|.+.++.++-.+..+++.++|+. |+ ++..++|+ +|+.+.+. ..
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv--------~VE~ElG~----vgg~e~~v-----~~ 147 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV--------SVEAELGA----VGGDEGGA-----LY 147 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC--------eEEeecCc----ccCCCCCc-----cc
Confidence 446889999999999999999999999999999999999998 76 45556664 66655432 11
Q ss_pred ccCCCCccccCeEEEecC-CHHHHHcccccCCCCEEEeCCC----CC----CCCCcc-hhhhhhcCCCCEEEEcC--CCc
Q 002437 179 KDSMSESVVLPLVGRNVQ-TLDAAFNASSSEGADFLVCCFG----EG----QKADVI-ENSLFTNVKIPIFIMNA--SPL 246 (921)
Q Consensus 179 ~~~~~~~~~~~~ig~S~h-~~~e~~~A~~~~gaDyv~~gpv----Tk----~~~g~~-~~~~~~~~~~Pv~aiGG--i~~ 246 (921)
+ + .|.|++ +++++.+...+.|+||+.+ ++ ++ ++.+++ +..+++.+++|+++.|| |+.
T Consensus 148 ~---~-------~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~ 216 (286)
T PRK06801 148 G---E-------ADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISD 216 (286)
T ss_pred C---C-------cccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 1 1 134565 5699888834799999998 55 22 123444 57888888999999999 999
Q ss_pred cChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 247 VDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
+++.++.++|+.+|.+..+....|.+.+.+.+
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~ 248 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAALAAVEQRM 248 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHHHHHHHHHH
Confidence 99999999999999998888888777776554
No 310
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.5e-08 Score=108.64 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=117.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCC--CCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKR--YLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~--~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.|+-+|+...|||||+.++.|.. .+| .+...+|.++.++.+...+ ..+.|||.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d------------------------~~~~fIDv 57 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED------------------------GVMGFIDV 57 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC------------------------CceEEeeC
Confidence 57889999999999999999863 233 3445677766665443322 13899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||. ++.-.-+...+...|..++|++++++.+.+..+.+.-+.-.+. +.++|+||+|...+ ..+++..+.+...+
T Consensus 58 pgh----~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-~r~e~~i~~Il~~l 132 (447)
T COG3276 58 PGH----PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-ARIEQKIKQILADL 132 (447)
T ss_pred CCc----HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-HHHHHHHHHHHhhc
Confidence 997 4444445555678999999999999998888888887777665 56999999999854 45666666655544
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ....++|.+|+..+ .|+++|.++|.+...
T Consensus 133 ~----l~~~~i~~~s~~~g---------------------------~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 133 S----LANAKIFKTSAKTG---------------------------RGIEELKNELIDLLE 162 (447)
T ss_pred c----cccccccccccccC---------------------------CCHHHHHHHHHHhhh
Confidence 4 45688999999987 799999999888773
No 311
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.85 E-value=1e-08 Score=102.43 Aligned_cols=132 Identities=20% Similarity=0.328 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|.++|+.|||||+|+..|......++ .|...... .+.. +.+..+.+.+||+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T---~tS~e~n~-~~~~---------------------~~~~~~~~~lvD~P 57 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT---VTSMENNI-AYNV---------------------NNSKGKKLRLVDIP 57 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCG---------------------SSTCGTCECEEEET
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe---eccccCCc-eEEe---------------------ecCCCCEEEEEECC
Confidence 46899999999999999999998743221 11111111 1110 01111358999999
Q ss_pred CCChhhhHHHHHHHH--hcCCCCEEEEEEeCCCCCC--HHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 444 GTNVILQRQQRLTEE--FVPRADLVLFVISADRPLT--ESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~--~l~~aD~il~V~da~~~~t--~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|....... .... +...+..||||+|+..... ....++|-.+ ...+.|+++++||.|+... .....+
T Consensus 58 GH~rlr~~---~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A-~~~~~I 133 (181)
T PF09439_consen 58 GHPRLRSK---LLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA-KPPKKI 133 (181)
T ss_dssp T-HCCCHH---HHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT----HHHH
T ss_pred CcHHHHHH---HHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc-CCHHHH
Confidence 97543322 2333 5788999999999874110 1111233222 2466899999999999864 223445
Q ss_pred HHHHHHHHHHh
Q 002437 514 ISFVKENTMKL 524 (921)
Q Consensus 514 ~~~~~~~~~~~ 524 (921)
+..+...+..+
T Consensus 134 k~~LE~Ei~~l 144 (181)
T PF09439_consen 134 KKLLEKEIDKL 144 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 312
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.84 E-value=3.1e-08 Score=103.54 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|..++||||..+.+.+.-... +.....|..+....... .+. -.+.+||+||
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-------------~~~----------~~l~iwD~pG 57 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-------------LSF----------LPLNIWDCPG 57 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-------------TTS----------CEEEEEEE-S
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-------------CCC----------cEEEEEEcCC
Confidence 58999999999999999999864211 11222333333222110 111 1489999999
Q ss_pred CChhhhH-HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH----HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 445 TNVILQR-QQRLTEEFVPRADLVLFVISADRPLTESEVV----FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 445 ~~~~~~~-~~~~~~~~l~~aD~il~V~da~~~~t~~e~~----~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.....+. .........+.++++|||+|+....-..+.. ++..+.+ .+.++.++++|+|+..+ +..+++.+..
T Consensus 58 q~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~-~~r~~~~~~~ 136 (232)
T PF04670_consen 58 QDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE-DEREEIFRDI 136 (232)
T ss_dssp SCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H-HHHHHHHHHH
T ss_pred ccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH-HHHHHHHHHH
Confidence 9655332 1222445568999999999998444455554 3444444 34579999999999854 4555555555
Q ss_pred HHHHHHhhCCC---CCeEEEecccc
Q 002437 518 KENTMKLLNIE---NVTIYPVSARS 539 (921)
Q Consensus 518 ~~~~~~~~~~~---~~~v~~vSA~~ 539 (921)
.+.+.+.+... ...+|.+|-..
T Consensus 137 ~~~i~~~~~~~~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 137 QQRIRDELEDLGIEDITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHTT-TSEEEEEE-TTS
T ss_pred HHHHHHHhhhccccceEEEeccCcC
Confidence 55555544332 36677777643
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.2e-08 Score=101.59 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=113.2
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCc--cchhhcccccCCCeEEeecCCCccccc
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLA--SEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
+...+.+|+.+|..+.|||||..|++..-... + .. ....|...+ .++..+.......++..... -+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~-~-~~-----~~~~y~~id~aPeEk~rGITIntahveyet~---~rhy 77 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKK-G-GA-----EAKAYDQIDNAPEEKARGITINTAHVEYETA---NRHY 77 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhh-c-cc-----cccchhhhccCchHhhcCceeccceeEEecC---CceE
Confidence 44567899999999999999999987421100 0 00 000111111 11111211111111111111 1358
Q ss_pred EEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCChHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~~~~~~~v 513 (921)
..||+||.- ..+++.+ ...|..|+|+++.++...+.++.+-..++.+. .+++++||+|++++++-++.+
T Consensus 78 ahVDcPGHa-------DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 78 AHVDCPGHA-------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred EeccCCChH-------HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHH
Confidence 899999953 2344443 56799999999988777777777777777776 578899999999875556655
Q ss_pred HHHHHHHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...+++.+.. ++. .+.||+.-||..++... ..|. .-+.+|.+.+.+++..
T Consensus 151 emEvreLLs~-y~f~gd~~Pii~gSal~ale~~------------------~~~~-~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EMEVRELLSE-YGFPGDDTPIIRGSALKALEGD------------------AKWE-AKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHHHHHH-cCCCCCCcceeechhhhhhcCC------------------cchH-HHHHHHHHHHHhcCCC
Confidence 5556655544 344 46788888988775432 2232 4466777777776654
No 314
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.9e-08 Score=114.86 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=96.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.|.++|+|+..+|||-|+..+.+.++.-......|..+-...+....... .......++.-....| ++.+|||
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e-~tk~~~~~~K~~~kvP-----g~lvIdt 547 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIRE-KTKELKKDAKKRLKVP-----GLLVIDT 547 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHH-HHHHHHhhhhhhcCCC-----eeEEecC
Confidence 357899999999999999999999988776666666654332222111000 0011111222112222 5899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||. +.+..+.......||++|+|+|..+++..+..+-|..|+..+.|+||.+||+|.+..
T Consensus 548 pgh----EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYg 607 (1064)
T KOG1144|consen 548 PGH----ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYG 607 (1064)
T ss_pred CCc----hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcc
Confidence 996 455566677778999999999999999888889999999999999999999998755
No 315
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.83 E-value=1.9e-06 Score=95.59 Aligned_cols=144 Identities=19% Similarity=0.291 Sum_probs=98.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccc----------hh----------------
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASE----------EQ---------------- 414 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~----------~~---------------- 414 (921)
+..|+|+|+|..++||||++..+....++|.|.+. .|..+.-+.....+.. ..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 45689999999999999999999999999977664 4444444433332211 00
Q ss_pred hcccccCCCe------EEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEEEEEeCCCC-CCH
Q 002437 415 QRCERHPDGQ------YICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVLFVISADRP-LTE 478 (921)
Q Consensus 415 ~~~~~~~~g~------~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il~V~da~~~-~t~ 478 (921)
.......+|+ +......|-|..+++||.||+.+. .+....+...|+.+.++||+++.-.+- ...
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 0011122333 345566788889999999998432 234567888999999999999843321 112
Q ss_pred HH-HHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 479 SE-VVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 479 ~e-~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
+. .++..++..++...|+|++|.|+..
T Consensus 466 SnVTDLVsq~DP~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCCCCCeeEEEEeecchhh
Confidence 22 2466777788999999999999864
No 316
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.83 E-value=5.6e-09 Score=111.76 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~ 246 (921)
++..+|+.++ +. + +||+||||.+|+.+| ...||||+++.+ .|++ .+++++.. ++|++|+|||++
T Consensus 177 ~v~~aR~~~~---~~-~---~Igvsv~tleea~~A-~~~gaDyI~lD~-----~~~e~l~~~~~~~~~~i~i~AiGGIt~ 243 (277)
T PRK08072 177 AVTSVREKLG---HM-V---KIEVETETEEQVREA-VAAGADIIMFDN-----RTPDEIREFVKLVPSAIVTEASGGITL 243 (277)
T ss_pred HHHHHHHhCC---CC-C---EEEEEeCCHHHHHHH-HHcCCCEEEECC-----CCHHHHHHHHHhcCCCceEEEECCCCH
Confidence 5678888875 44 3 799999999999999 799999999964 3444 45666554 478889999999
Q ss_pred cChHHHHHcCCcEEEEee
Q 002437 247 VDVSKFLKSGASGFVISL 264 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~ 264 (921)
+|+.++.++|++|||+..
T Consensus 244 ~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 244 ENLPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 999999999999998754
No 317
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.82 E-value=1.1e-08 Score=109.56 Aligned_cols=160 Identities=14% Similarity=0.078 Sum_probs=109.2
Q ss_pred chHHHHHHHHhcCCcEEEE-eCCCCCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCCHH
Q 002437 100 DALDLIDEAVAKFVGIVVL-NGGEASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLPAI 172 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vql-R~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~~~ 172 (921)
+..+.......+|+..+-. =++..-... ++..+.++..+ ..+++..| .++.|...|||+|||....++..
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~ 147 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDE 147 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHH
Confidence 4456666666888877644 222211111 22333333332 45655544 35677889999999999998876
Q ss_pred HHHHhcccCCCCccccCeEEEe----cCCHHHHHcccccCCCCEEEeCCCCC--CCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 173 VARNTMKDSMSESVVLPLVGRN----VQTLDAAFNASSSEGADFLVCCFGEG--QKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S----~h~~~e~~~A~~~~gaDyv~~gpvTk--~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
..+.+.. .. + .+|.+ |||.+|+.+| .+.|+||+++++.+. ..+.+. ..++.... ..|++|.||
T Consensus 148 ~l~~li~---~a-~---~lGl~~lvevh~~~E~~~A-~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegG 219 (260)
T PRK00278 148 QLKELLD---YA-H---SLGLDVLVEVHDEEELERA-LKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESG 219 (260)
T ss_pred HHHHHHH---HH-H---HcCCeEEEEeCCHHHHHHH-HHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 6766653 11 1 34666 9999999999 799999999998622 122333 35555544 369999999
Q ss_pred C-CccChHHHHHcCCcEEEEeecccccc
Q 002437 244 S-PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 244 i-~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
| +++++..+.++|++||+|.++.++.-
T Consensus 220 I~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 220 IFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 9 69999999999999999999988863
No 318
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.81 E-value=2e-08 Score=108.46 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=99.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...+++|++.|++.|++|.+.. ...++.+.+.++.++|+. |.+++++. .++|+|+... ..
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~--------~~~g~~~e~~-~~------ 158 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMM--------YPRGPGIKNE-YD------ 158 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEE--------ecCCCccCCC-cc------
Confidence 556779999999999999997644 467789999999999998 99999865 3679999432 11
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccC-------
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVD------- 248 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~------- 248 (921)
++ .+. ..++.| .+.|||||=.+.. .++. .+++.+..++||+|+|||+.+|
T Consensus 159 ------~~-----~i~------~a~~~a-~e~GAD~vKt~~~----~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~ 216 (267)
T PRK07226 159 ------PE-----VVA------HAARVA-AELGADIVKTNYT----GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEM 216 (267)
T ss_pred ------HH-----HHH------HHHHHH-HHHCCCEEeeCCC----CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH
Confidence 11 011 112445 5789999955521 2333 4677777789999999999886
Q ss_pred hHHHHHcCCcEEEEeeccccc
Q 002437 249 VSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 249 ~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.+++++||.|+++.++.+..
T Consensus 217 v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 217 VRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHcCCcEEehhhhhhcC
Confidence 778889999999888887765
No 319
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.81 E-value=1.8e-08 Score=93.58 Aligned_cols=144 Identities=22% Similarity=0.270 Sum_probs=96.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++..|+|.+++|||||+-.+....+. .++..|+..--.++--+ -+|.- -.+.||||
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~------------i~G~~---------VkLqIwDt 64 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVD------------INGDR---------VKLQIWDT 64 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccc-cceEEEeeeeEEEEEee------------cCCcE---------EEEEEeec
Confidence 3467789999999999999988877543 23332222111111100 01211 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC--CeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWK--KKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~--~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.|. +++..++..|.+..+++++|+|..+..+..+. .||+.++... .|-++|.||.|...... +-++.+.+
T Consensus 65 AGq----ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~-- 138 (198)
T KOG0079|consen 65 AGQ----ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAF-- 138 (198)
T ss_pred ccH----HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHH--
Confidence 996 77889999999999999999999988776664 5888888755 47789999999864410 11222222
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..--+..+|..|+++.
T Consensus 139 ------A~~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 139 ------ALQMGIELFETSAKEN 154 (198)
T ss_pred ------HHhcCchheehhhhhc
Confidence 1113477899999875
No 320
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.8e-08 Score=105.27 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
-.|++.++|+.|.|||||||.|++..+...... +.|..+.. .+....++|.-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~-----------~~~~iee~g~~l--------- 79 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIES-----------TKVEIEENGVKL--------- 79 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeee-----------eeeeecCCCeEE---------
Confidence 359999999999999999999998855432100 11111111 111122233321
Q ss_pred ccEEEeCCCCChhhh----------HHHHHHHHhc-------------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVILQ----------RQQRLTEEFV-------------PRADLVLFVISAD-RPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~----------~~~~~~~~~l-------------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~ 491 (921)
+++++||||+++... -.......|+ .+.|++||.+... +++..-+..+++.+.. .
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-K 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-c
Confidence 589999999964311 1111222222 2788999999876 5588999999998876 4
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.++|.|+-|+|... .+++...++.+.+.+... .++||....
T Consensus 159 vNiIPVI~KaD~lT-~~El~~~K~~I~~~i~~~----nI~vf~fp~ 199 (366)
T KOG2655|consen 159 VNLIPVIAKADTLT-KDELNQFKKRIRQDIEEH----NIKVFDFPT 199 (366)
T ss_pred ccccceeeccccCC-HHHHHHHHHHHHHHHHHc----CcceecCCC
Confidence 79999999999994 477888888887776553 345554433
No 321
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.79 E-value=8.1e-08 Score=119.12 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=80.1
Q ss_pred CHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-cccccEEEeCCCCChhhhHHHH
Q 002437 376 GKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-ILKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 376 GKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~l~~l~lvDTPG~~~~~~~~~~ 454 (921)
+||||+.+|.+.++.......-|..+-.+.......... .+.....+..+ -..++.||||||.. .+..
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~-------~~~~~~~~~~~~~~p~i~fiDTPGhe----~F~~ 541 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKI-------CGPLLKLLKAEIKIPGLLFIDTPGHE----AFTS 541 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccc-------cccccccccccCCcCcEEEEECCCcH----HHHH
Confidence 599999999999987666666676554333221110000 00000000000 01358999999963 3344
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
+.......+|++++|+|++++++.+..+.+..+...+.|+++|+||+|+..
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 455567889999999999988888888888888888899999999999974
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7.1e-08 Score=104.95 Aligned_cols=104 Identities=18% Similarity=0.000 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++++++|.||+|||||+||++.....+.++++||-++........+..............-+.+. .+.+||.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~------~ve~vDIA 75 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPA------PVEFVDIA 75 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEee------eeEEEEec
Confidence 368999999999999999999999877788999998877654433221111111111111112222 48999999
Q ss_pred CCChh---hhHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVI---LQRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~---~~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+-.. .+.....-..-++++|+|+.|+++.
T Consensus 76 GLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 76 GLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 98311 1222334556679999999999986
No 323
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.78 E-value=6.4e-08 Score=102.91 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCcc------------chhhcccccCCCeEEee
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLAS------------EEQQRCERHPDGQYICY 428 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~~~ 428 (921)
....++..+|...-||||||-.|+.+.-. ..+...+- ....-+++..+. .+.++..... --|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l-~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITID-VAYRy- 80 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL-ERDSKRKGTQGEKIDLALLVDGLEAEREQGITID-VAYRY- 80 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH-hcccccccCCCCccchhhhhhhhHHHHhcCceEE-EEeee-
Confidence 35678999999999999999999876322 11111000 000000000000 0001111100 00111
Q ss_pred cCCCcccccEEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHH--HHHHhhhcCCeEEEEEeCCCC
Q 002437 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVV--FLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 429 ~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~--~l~~l~~~~~~vivVlNK~D~ 503 (921)
-+---+.+.+.||||. ++.++++. ..||+.|+++|+..+..++.++ ++..+.. -+.+++.+||+|+
T Consensus 81 -FsT~KRkFIiADTPGH-------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDL 151 (431)
T COG2895 81 -FSTEKRKFIIADTPGH-------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDL 151 (431)
T ss_pred -cccccceEEEecCCcH-------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC-CcEEEEEEeeecc
Confidence 1111256999999994 44566655 7899999999999887666664 3333332 2578999999999
Q ss_pred CCChHH-HHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 504 YQNAFE-LEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 504 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
++-.++ .+++...... +...++.....++|+||..|-
T Consensus 152 vdy~e~~F~~I~~dy~~-fa~~L~~~~~~~IPiSAl~GD 189 (431)
T COG2895 152 VDYSEEVFEAIVADYLA-FAAQLGLKDVRFIPISALLGD 189 (431)
T ss_pred cccCHHHHHHHHHHHHH-HHHHcCCCcceEEechhccCC
Confidence 976433 4444444443 334456677899999999883
No 324
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.77 E-value=9.2e-09 Score=110.58 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhc----CCCCEEEE
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTN----VKIPIFIM 241 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~----~~~Pv~ai 241 (921)
+.+.+...+|+..+ ++ + .||+||||++|+.+| ...|+|||.++|++. .. ..++.+. .++|++|+
T Consensus 166 ~~~~~v~~~r~~~~---~~-~---~I~vev~t~eea~~A-~~~gaD~I~ld~~~~--e~--l~~~v~~i~~~~~i~i~as 233 (269)
T cd01568 166 GITEAVKRARAAAP---FE-K---KIEVEVETLEEAEEA-LEAGADIIMLDNMSP--EE--LKEAVKLLKGLPRVLLEAS 233 (269)
T ss_pred CHHHHHHHHHHhCC---CC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCCCH--HH--HHHHHHHhccCCCeEEEEE
Confidence 33457888999874 34 3 699999999999999 799999999999822 11 1222222 37899999
Q ss_pred cCCCccChHHHHHcCCcEEEE
Q 002437 242 NASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~ 262 (921)
|||+++|+.++.++|+++|++
T Consensus 234 GGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 234 GGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999986
No 325
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.7e-08 Score=95.46 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=96.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC------CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL------KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~------~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
+.+.|++.|.-|||||||+.++-..... |....||..- . .|.+... ...
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-n-------------------ig~i~v~-----~~~ 70 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-N-------------------IGTIEVC-----NAP 70 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-e-------------------ecceeec-----cce
Confidence 4588999999999999999988543221 1112222110 0 0111000 024
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHH-HHHHHHH----hhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTES-EVVFLRY----TQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~-e~~~l~~----l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+.+||.-|. +...+++..|+..|++|+||+|+.++...+ ....++. -...+.|+++..||-|+.+. -+..
T Consensus 71 l~fwdlgGQ----e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-~~~~ 145 (197)
T KOG0076|consen 71 LSFWDLGGQ----ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-MEAA 145 (197)
T ss_pred eEEEEcCCh----HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-hhHH
Confidence 899999997 667889999999999999999998743222 2222332 23467899999999998744 3444
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++...... .+..+....++.||||..+
T Consensus 146 El~~~~~~--~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 146 ELDGVFGL--AELIPRRDNPFQPVSALTG 172 (197)
T ss_pred HHHHHhhh--hhhcCCccCccccchhhhc
Confidence 44444332 3445667889999999988
No 326
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.73 E-value=8.9e-08 Score=98.18 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=94.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||+|+..+++..+. ..+.||......-.. .. +|.. ..+.|+||+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~------------~v-~~~~---------~~l~ilDt~ 59 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKEL------------TV-DGEV---------CMLEILDTA 59 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEE------------EE-CCEE---------EEEEEEcCC
Confidence 578999999999999999999988764 335565542111111 11 1221 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCC-hHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQN-AFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~-~~~~~~v~~~~ 517 (921)
|. +++..+-..++..+|++++|++.++..+.++.. ++.+|.+ ...|+++|.||+|+... .-..++..
T Consensus 60 g~----~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~--- 132 (196)
T KOG0395|consen 60 GQ----EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK--- 132 (196)
T ss_pred Cc----ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH---
Confidence 94 344556777889999999999999887777664 4445522 33599999999999753 11112211
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+ .....++.+.+||+..
T Consensus 133 --~l---a~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 133 --AL---ARSWGCAFIETSAKLN 150 (196)
T ss_pred --HH---HHhcCCcEEEeeccCC
Confidence 11 2224577899999764
No 327
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4e-08 Score=117.49 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=102.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.....+|+++|+..+|||||...|+-..-.......+...-+.. +....+.+|..........++|.. -..++||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~---D~~e~EqeRGITI~saa~s~~~~~--~~~iNlI 81 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATM---DWMEQEQERGITITSAATTLFWKG--DYRINLI 81 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccC---CCcHHHHhcCCEEeeeeeEEEEcC--ceEEEEe
Confidence 34567999999999999999999974321111111111111111 112223344444444444444432 1258999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||.-++..+ +...++-+|..|+|+|+..+...+....++++.+.+.|.++++||+|.... ++..+.+.+..+
T Consensus 82 DTPGHVDFt~E----V~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a--~~~~~~~~l~~~ 155 (697)
T COG0480 82 DTPGHVDFTIE----VERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA--DFYLVVEQLKER 155 (697)
T ss_pred CCCCccccHHH----HHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc--ChhhhHHHHHHH
Confidence 99998655433 666778899999999999999888888999999999999999999999865 555666666665
Q ss_pred HHH
Q 002437 521 TMK 523 (921)
Q Consensus 521 ~~~ 523 (921)
+..
T Consensus 156 l~~ 158 (697)
T COG0480 156 LGA 158 (697)
T ss_pred hCC
Confidence 443
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.71 E-value=3e-08 Score=106.42 Aligned_cols=100 Identities=19% Similarity=0.080 Sum_probs=61.3
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|.||+|||||+|+|++.+....+..+||..+........+......+........ .| ..+.++|+||+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~---~~----~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKI---VP----ATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCcee---ee----eEEEEEECCCcC
Confidence 57999999999999999999998666777788665543322111100000000000000 00 148999999985
Q ss_pred hhhhH---HHHHHHHhcCCCCEEEEEEeCC
Q 002437 447 VILQR---QQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 447 ~~~~~---~~~~~~~~l~~aD~il~V~da~ 473 (921)
..... ........++.+|++++|+|+.
T Consensus 74 ~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 74 KGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred CCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 32222 2223445568899999999975
No 329
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.8e-07 Score=91.81 Aligned_cols=130 Identities=25% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+..|.++|..+||||+|+-.|......++-..-...+.+ +++++ ..+.|||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~-~r~gs--------------------------~~~~LVD 88 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEAT-YRLGS--------------------------ENVTLVD 88 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceee-EeecC--------------------------cceEEEe
Confidence 34578999999999999999888766332110000000111 11110 1379999
Q ss_pred CCCCChhhhHHHHHHHHhcC---CCCEEEEEEeCCCCC--CHHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVP---RADLVLFVISADRPL--TESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~---~aD~il~V~da~~~~--t~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
.||. ++......++++ .+-+||||+|+.... -..--+||-.+ ...+.|+++.+||.|+.-.. ..
T Consensus 89 ~PGH----~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk-t~ 163 (238)
T KOG0090|consen 89 LPGH----SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK-TA 163 (238)
T ss_pred CCCc----HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC-cH
Confidence 9996 455556667775 799999999986322 11222333222 24567999999999997542 22
Q ss_pred HHHHHHHHHHHHH
Q 002437 511 EEAISFVKENTMK 523 (921)
Q Consensus 511 ~~v~~~~~~~~~~ 523 (921)
+.+++++...+..
T Consensus 164 ~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 164 EKIRQQLEKEIHK 176 (238)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 330
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.2e-07 Score=92.72 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|--||||||++..|--.++..+ .||-. .+..+.|.. -.+.+||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt--vPTiGfnVE~v~ykn--------------------------~~f~vWD 67 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--VPTIGFNVETVEYKN--------------------------ISFTVWD 67 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC--CCccccceeEEEEcc--------------------------eEEEEEe
Confidence 457999999999999999998876655433 44432 222233321 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
.-|.. +....+..|++..+.+|||+|+++...-.+. ++.+.+.. ...|+++..||.|+...-. ..++.+.
T Consensus 68 vGGq~----k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~ 142 (181)
T KOG0070|consen 68 VGGQE----KLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNK 142 (181)
T ss_pred cCCCc----ccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhH
Confidence 99984 4456799999999999999999875533332 23333333 3579999999999876521 1222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. +.+ +....-.|..++|.+|
T Consensus 143 L~--l~~-l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 143 LG--LHS-LRSRNWHIQSTCAISG 163 (181)
T ss_pred hh--hhc-cCCCCcEEeecccccc
Confidence 21 111 1223456777788776
No 331
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.9e-07 Score=104.26 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC------------CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK------------DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~------------~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
....++|+|...+|||||+-.|+-.---+ ...++.. +.+-..-+...++.++......+...+.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~S--f~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSS--FAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcc--eeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 56789999999999999999886321000 0011111 1111112222333344333333332221
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcC-CeEEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWK-KKVVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~-~~vivVlNK~D 502 (921)
+--+.++|+|+||..++.+. +..-...||+.++|+|++...-+ +..+....++..+ ..+||++||+|
T Consensus 252 -s~~~~~tliDaPGhkdFi~n----mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 252 -SKSKIVTLIDAPGHKDFIPN----MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred -cCceeEEEecCCCccccchh----hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 11145899999997544433 33445789999999999853221 1223333334444 57999999999
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 503 LYQ-NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 503 ~~~-~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
.+. +++.++++...+..-+.+..+. ..+.++|+|+..|-
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGE 368 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCC
Confidence 985 3455777777777766555565 34589999999883
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.9e-07 Score=101.20 Aligned_cols=145 Identities=19% Similarity=0.295 Sum_probs=102.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
....||.|+|+|++|+||||||..|..+-.- .-....+..+|++.... +.+++
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i~GPiTvvsgK~--------------------------RRiTf 117 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEIRGPITVVSGKT--------------------------RRITF 117 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHH-hhhhccCCceEEeecce--------------------------eEEEE
Confidence 4456788999999999999999999865211 01111122222322111 35899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+.+|. ++ ........-||+||+++|++-++.-+.++||..+..++.| ++.|++..|+..+...+..+.+.++
T Consensus 118 lEcp~--Dl-----~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk 190 (1077)
T COG5192 118 LECPS--DL-----HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK 190 (1077)
T ss_pred EeChH--HH-----HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHh
Confidence 99993 22 2234455779999999999999888889999998888865 7789999999999888888888777
Q ss_pred HHHHHhhCCCCCeEEEecccc
Q 002437 519 ENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~ 539 (921)
.++-..+. .+...|.+|...
T Consensus 191 hRfWtEiy-qGaKlFylsgV~ 210 (1077)
T COG5192 191 HRFWTEIY-QGAKLFYLSGVE 210 (1077)
T ss_pred hhHHHHHc-CCceEEEecccc
Confidence 66554432 356788887643
No 333
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.6e-07 Score=86.33 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=93.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
-.++++++|+.|+|||.|+..+...++.- +..+|. . +.++..- ..-.|..+ .+.||||
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTi-G---veFgSrI--------inVGgK~v---------KLQIWDT 65 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTI-G---VEFGSRI--------VNVGGKTV---------KLQIWDT 65 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcc-ccccee-e---eeeccee--------eeecCcEE---------EEEEeec
Confidence 45899999999999999999998766531 112221 1 1111100 00112211 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCe---EEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKK---VVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~---vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +++..+++.|++.|-..++|+|+.+..+...+ .||..++....| ++++.||.|+....+ ...+..+
T Consensus 66 AGQ----ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~-- 139 (214)
T KOG0086|consen 66 AGQ----ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-- 139 (214)
T ss_pred ccH----HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHh--
Confidence 997 78889999999999999999999987776665 366666654443 556779999875411 1122222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+........+..||++|
T Consensus 140 ------FaqEnel~flETSa~TG 156 (214)
T KOG0086|consen 140 ------FAQENELMFLETSALTG 156 (214)
T ss_pred ------hhcccceeeeeeccccc
Confidence 22223456778899887
No 334
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=1.3e-07 Score=104.05 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=70.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||.-++.-+ ..+.+..|...|+|+|++++...+...-.-..-+++..++.|+||+|+... +.+.+..
T Consensus 77 ~lnlIDTPGHVDFsYE----VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A--dpervk~ 150 (603)
T COG0481 77 VLNLIDTPGHVDFSYE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA--DPERVKQ 150 (603)
T ss_pred EEEEcCCCCccceEEE----ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC--CHHHHHH
Confidence 3899999998544322 334456688999999999987666655444455678899999999999865 3344444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchH
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+ +.+.++.+....+.+||++|+
T Consensus 151 e----Ie~~iGid~~dav~~SAKtG~ 172 (603)
T COG0481 151 E----IEDIIGIDASDAVLVSAKTGI 172 (603)
T ss_pred H----HHHHhCCCcchheeEecccCC
Confidence 4 455678888889999999984
No 335
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.60 E-value=4.7e-08 Score=104.59 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=69.1
Q ss_pred CeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CC
Q 002437 160 SGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KI 236 (921)
Q Consensus 160 ~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~ 236 (921)
.|+|.+ ...+|+.. |+ + .|+++|||.+|+.+| .+.|+|||.+++. +++ .+++.+.. ++
T Consensus 174 g~v~~a-----v~~~r~~~----~~-~---~I~VEv~tleea~eA-~~~gaD~I~LD~~-----~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 174 GGIAQA-----VAAAHRIA----PG-K---PVEVEVESLDELRQA-LAAGADIVMLDEL-----SLDDMREAVRLTAGRA 234 (277)
T ss_pred CCHHHH-----HHHHHHhC----CC-C---eEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCC
Confidence 467773 66778764 55 3 699999999999999 8999999999866 333 34444433 79
Q ss_pred CEEEEcCCCccChHHHHHcCCcEEEEee
Q 002437 237 PIFIMNASPLVDVSKFLKSGASGFVISL 264 (921)
Q Consensus 237 Pv~aiGGi~~~~~~~~~~~Ga~gva~~~ 264 (921)
|++|+|||+++|+.++.++|+++|++..
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 9999999999999999999999997644
No 336
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.59 E-value=4.8e-08 Score=103.31 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=60.2
Q ss_pred ccEEEeCCCCChhh---hHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHHHH--H---HHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVIL---QRQQRLTEEFVP-RADLVLFVISADRPLTESEVV--F---LRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~---~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e~~--~---l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.|+||||+-... +....++...-+ ..=+++|++|+....+....- + +...-+.+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 58999999985432 222223333322 344789999988654433321 1 12233578999999999999963
Q ss_pred h--HHHHH---------H----HHHHHHHHHHhhCC-CCC-eEEEecccchHHhhcccccccccCcccccccCccccccc
Q 002437 507 A--FELEE---------A----ISFVKENTMKLLNI-ENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT 569 (921)
Q Consensus 507 ~--~~~~~---------v----~~~~~~~~~~~~~~-~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg 569 (921)
. ..++. . .+.+...+...+.. ... +++++|+..+ .|
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~---------------------------~~ 224 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG---------------------------EG 224 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT---------------------------TT
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh---------------------------HH
Confidence 1 11111 1 12233334444332 234 7899999876 78
Q ss_pred hHHHHHHHHHhh
Q 002437 570 FDKLEKLLYSFL 581 (921)
Q Consensus 570 ~~~L~~~l~~~l 581 (921)
+.+|...+.+.+
T Consensus 225 ~~~L~~~id~a~ 236 (238)
T PF03029_consen 225 MEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887653
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=97.57 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=86.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++.+++.|.+|+|||||||.++..+.......+.+.....+.+... .+.+++||.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v------------------------~~~~~~vDl 190 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV------------------------GKSWYEVDL 190 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec------------------------cceEEEEec
Confidence 45899999999999999999999876543222223322222222111 135899999
Q ss_pred CCCC------hhhhHHHHHHHHhcCCC---CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 443 PGTN------VILQRQQRLTEEFVPRA---DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~------~~~~~~~~~~~~~l~~a---D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||++ .....+..++..|+.+- --+++.+|++.++...+...+..+.+.+.|+.+|+||+|....
T Consensus 191 PG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 191 PGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred CCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 9942 12355677888887322 2456777999888888888999999999999999999998654
No 338
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.57 E-value=8.8e-08 Score=102.95 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhhc-CCCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFTN-VKIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~~-~~~Pv~aiGGi~~ 246 (921)
....+|+.. |+ + .||+||||.+|+.+| .+.|+|||.+||+... ++. ...+... .++|++|+|||++
T Consensus 173 av~~~R~~~----~~-~---~IgVev~t~eea~~A-~~~gaD~I~ld~~~p~--~l~~~~~~~~~~~~~i~i~AsGGI~~ 241 (272)
T cd01573 173 ALARLRATA----PE-K---KIVVEVDSLEEALAA-AEAGADILQLDKFSPE--ELAELVPKLRSLAPPVLLAAAGGINI 241 (272)
T ss_pred HHHHHHHhC----CC-C---eEEEEcCCHHHHHHH-HHcCCCEEEECCCCHH--HHHHHHHHHhccCCCceEEEECCCCH
Confidence 356777765 55 3 689999999999999 7999999999998221 222 1223332 3699999999999
Q ss_pred cChHHHHHcCCcEEEEeeccc
Q 002437 247 VDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~ 267 (921)
+|+.++.++|+++| ++++..
T Consensus 242 ~ni~~~~~~Gvd~I-~vsai~ 261 (272)
T cd01573 242 ENAAAYAAAGADIL-VTSAPY 261 (272)
T ss_pred HHHHHHHHcCCcEE-EEChhh
Confidence 99999999999999 555553
No 339
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.56 E-value=2e-06 Score=81.66 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=97.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+++.|+|..-+|||||+..++..++...+ .||... ....+.....+|.-+ .+.||||.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgv-----------dffarlie~~pg~ri---------klqlwdta 66 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGV-----------DFFARLIELRPGYRI---------KLQLWDTA 66 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccch-----------HHHHHHHhcCCCcEE---------EEEEeecc
Confidence 478999999999999999999987765322 333321 111222233334321 48999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhc----CCeE-EEEEeCCCCCCChHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQW----KKKV-VFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~----~~~v-ivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|. +++..+++.|++++-.++.|+|.++..+.+... +++..... .+++ .+|..|+|+... .++...-
T Consensus 67 gq----erfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt~EE 138 (213)
T KOG0091|consen 67 GQ----ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVTAEE 138 (213)
T ss_pred ch----HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----ccccHHH
Confidence 97 788899999999999999999999887777664 44444321 2333 367899999743 2222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchH
Q 002437 518 KENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
.+.+.. .....++.+||+.+-
T Consensus 139 aEklAa---~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 139 AEKLAA---SHGMAFVETSAKNGC 159 (213)
T ss_pred HHHHHH---hcCceEEEecccCCC
Confidence 222222 245789999999983
No 340
>PRK08185 hypothetical protein; Provisional
Probab=98.56 E-value=4.2e-07 Score=97.54 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~ 180 (921)
++.+.+|++.|.+.|++|.+.++.++..+.++++.++|+. |+.+ ..++ |. +|.... +
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v--------E~El---G~-vg~~e~---------~- 138 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV--------EGEL---GT-IGNTGT---------S- 138 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE--------EEEE---ee-ccCccc---------c-
Confidence 5889999999999999999999999999999999999999 8877 2333 44 654321 0
Q ss_pred CCCCccccCeEEEe---cCCHHHHHcccccC-CCCEEEe-----CCC--C--CCCCCcc-hhhhhhcCCCCEEEEcCCC-
Q 002437 181 SMSESVVLPLVGRN---VQTLDAAFNASSSE-GADFLVC-----CFG--E--GQKADVI-ENSLFTNVKIPIFIMNASP- 245 (921)
Q Consensus 181 ~~~~~~~~~~ig~S---~h~~~e~~~A~~~~-gaDyv~~-----gpv--T--k~~~g~~-~~~~~~~~~~Pv~aiGGi~- 245 (921)
. .++.| .|+++|+.+. .+. |+||+.+ +++ | |+...++ ++++++.+++|+++.||++
T Consensus 139 -----~---~~~~~~~~~t~peea~~f-~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~ 209 (283)
T PRK08185 139 -----I---EGGVSEIIYTDPEQAEDF-VSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSAN 209 (283)
T ss_pred -----c---ccccccccCCCHHHHHHH-HHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCC
Confidence 0 12333 7899999998 554 9999999 555 4 3333343 5888888899999999875
Q ss_pred -ccChHHHHHcCCcEEEEeecccccchHHHHH
Q 002437 246 -LVDVSKFLKSGASGFVISLEDLSLFNDGVLS 276 (921)
Q Consensus 246 -~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~ 276 (921)
.+++..+.+.|+.-|=+.......|...+.+
T Consensus 210 ~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~ 241 (283)
T PRK08185 210 PDAEIAESVQLGVGKINISSDMKYAFFKKVRE 241 (283)
T ss_pred CHHHHHHHHHCCCeEEEeChHHHHHHHHHHHH
Confidence 5568999999999996555554455544443
No 341
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.55 E-value=2.8e-07 Score=110.00 Aligned_cols=145 Identities=23% Similarity=0.318 Sum_probs=102.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc---hhh---c--------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE---EQQ---R-------------------- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~---~~~---~-------------------- 416 (921)
..|.|+|+|..++||||+++++.|..++|.|....|+++.+.+....... ... +
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et 107 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSET 107 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhH
Confidence 46899999999999999999999999999999999998887776443221 000 0
Q ss_pred --cc----ccCCCeEEeecCCCcccccEEEeCCCCCh---------hhhHHHHHHHHhcCCCCEEEEEEeCCC--CCCHH
Q 002437 417 --CE----RHPDGQYICYLPSPILKEMIIVDTPGTNV---------ILQRQQRLTEEFVPRADLVLFVISADR--PLTES 479 (921)
Q Consensus 417 --~~----~~~~g~~~~~~p~~~l~~l~lvDTPG~~~---------~~~~~~~~~~~~l~~aD~il~V~da~~--~~t~~ 479 (921)
.. ...+..+.....++...++++||+||+.. ...+...+...|+...+.++..+...+ -.+..
T Consensus 108 ~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~ 187 (657)
T KOG0446|consen 108 DRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSP 187 (657)
T ss_pred HHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCH
Confidence 00 00011234455566667899999999842 234567788999988888877776543 12334
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 480 EVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 480 e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
-+.+.+.+...+..+|.|++|+|+.+..
T Consensus 188 alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 188 ALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred HHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence 4455566666778999999999998653
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.9e-07 Score=103.36 Aligned_cols=137 Identities=22% Similarity=0.188 Sum_probs=90.2
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc--ccc
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL--KEM 437 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l--~~l 437 (921)
.-....+|+++|.-.+|||+|+..|.++.. |....++.. ..+|.+.-..+.+|............++..-. .-+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEA---DLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecc-ccccccccc---cccccccchhhHhcCceEeecceEEEEecCcCceeee
Confidence 334457899999999999999999998765 222222221 22344433222333222222211111111111 127
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
+++||||.-.+. .-+...+..+|++++|+|+..+.+-...++++..-+...|+.+|+||+|++
T Consensus 200 nilDTPGHVnF~----DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFS----DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccch----HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999974333 235556788999999999999998888889999888999999999999974
No 343
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.53 E-value=1.2e-06 Score=82.28 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=96.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
++....+|+|+|.-++|||+++..|+-.+..+ +...||..++........ .|. -..+.
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~------------rga---------rE~l~ 63 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETD------------RGA---------REQLR 63 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecC------------CCh---------hheEE
Confidence 34567899999999999999999987444333 344455544433322211 111 02489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-Hhhhc----CCeEEEEEeCCCCCCChHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQQW----KKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~l~~~----~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|.||.|+.+. ..++-+.|+.-+|++++|++..++.+.+..+.|+ .|.+. ..|++++.||.|+..+..-..++
T Consensus 64 lyDTaGlq~~---~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~ 140 (198)
T KOG3883|consen 64 LYDTAGLQGG---QQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV 140 (198)
T ss_pred EeecccccCc---hhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence 9999998422 3566778889999999999999887777766665 34332 25899999999997442111111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
... +...+.+..+.|++..
T Consensus 141 A~~-------Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 141 AQI-------WAKREKVKLWEVTAMD 159 (198)
T ss_pred HHH-------HHhhhheeEEEEEecc
Confidence 111 2222457788888865
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.52 E-value=2.4e-07 Score=91.97 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
....|+|+|.+|+|||||||+|++.+..+++..|
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~ 134 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP 134 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC
Confidence 4578999999999999999999998877666555
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.51 E-value=1.7e-07 Score=94.10 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=43.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||||+|+|.+..+++..| +|.....+... .++.++
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---------------------------~~~~l~ 167 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---------------------------KKVKLL 167 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---------------------------CCEEEE
Confidence 45689999999999999999999999877766554 44443333221 248999
Q ss_pred eCCCC
Q 002437 441 DTPGT 445 (921)
Q Consensus 441 DTPG~ 445 (921)
||||+
T Consensus 168 DtPGi 172 (172)
T cd04178 168 DSPGI 172 (172)
T ss_pred ECcCC
Confidence 99995
No 346
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.3e-06 Score=92.57 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=101.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc--hhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE--EQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..+.+|+-+|....|||||..|++.--... .......|...+.. +..+........+... ...+.+.-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~-------g~A~~~kydeID~APEEkaRGITIn~aHveYe---Ta~RhYaH 121 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEK-------GGAKFKKYDEIDKAPEEKARGITINAAHVEYE---TAKRHYAH 121 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhc-------cccccccHhhhhcChhhhhccceEeeeeeeee---cccccccc
Confidence 356789999999999999999987311000 00001111111111 1111111111111100 01145778
Q ss_pred EeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
+|+||.. ..+++.+ ..-|..|+|+.+.++...+.++.|-..++.+ +.+++.+||.|.+++++.++-+.-
T Consensus 122 ~DCPGHA-------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 122 TDCPGHA-------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred CCCCchH-------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHH
Confidence 9999953 3455555 5669999999999888888888777777766 568889999999977555554444
Q ss_pred HHHHHHHHhhCC--CCCeEEEecccchHHhh
Q 002437 516 FVKENTMKLLNI--ENVTIYPVSARSTLEAK 544 (921)
Q Consensus 516 ~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~ 544 (921)
.+++.+..+ +. ...||+.-||..++..+
T Consensus 195 E~RElLse~-gf~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 195 EIRELLSEF-GFDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred HHHHHHHHc-CCCCCCCCeeecchhhhhcCC
Confidence 455444443 43 56899999999987664
No 347
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.48 E-value=6e-07 Score=93.44 Aligned_cols=167 Identities=19% Similarity=0.254 Sum_probs=89.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccC---Cccchhh----cccccCCCeEEeecCCC--
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSD---LASEEQQ----RCERHPDGQYICYLPSP-- 432 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~---~~~~~~~----~~~~~~~g~~~~~~p~~-- 432 (921)
..++.|+|+|..|+|||||++.++..... +. .+.++.... .+..... ......+|++.+ ....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~--~~-----~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~-~~~~~~ 91 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD--EV-----KIAVIEGDVITKFDAERLRKYGAPAIQINTGKECH-LDAHMV 91 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc--CC-----eEEEEECCCCCcccHHHHHHcCCcEEEEcCCCccc-CChHHH
Confidence 36899999999999999999999864110 00 000000000 0000000 011122222111 0000
Q ss_pred ---------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 433 ---------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 433 ---------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
.-.+++||+|.|.-.. +. .+-...+..+.|+|+.+..... .........+.++|+||+|+
T Consensus 92 ~~~l~~~~~~~~d~IiIEt~G~l~~-~~------~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl 160 (207)
T TIGR00073 92 AHALEDLPLDDIDLLFIENVGNLVC-PA------DFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADL 160 (207)
T ss_pred HHHHHHhccCCCCEEEEecCCCcCC-Cc------ccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHc
Confidence 0126899999992111 11 1112356667888887543221 12222345688999999999
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 504 YQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 504 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.... .+..++.+.++ +.. +..+++++||+++ .|++++.+++.+.
T Consensus 161 ~~~~~~~~~~~~~~l~----~~~--~~~~i~~~Sa~~g---------------------------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 161 AEAVGFDVEKMKADAK----KIN--PEAEIILMSLKTG---------------------------EGLDEWLEFLEGQ 205 (207)
T ss_pred cccchhhHHHHHHHHH----HhC--CCCCEEEEECCCC---------------------------CCHHHHHHHHHHh
Confidence 7532 22334433333 221 3478999999987 6888888877654
No 348
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.3e-06 Score=80.37 Aligned_cols=144 Identities=25% Similarity=0.363 Sum_probs=94.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..|+-.++|..|+|||.|+..++..++.. .-|.|-.+ +++.. . ....|+-+ .+.+|||
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfma--dcphtigv---efgtr-------i-ievsgqki---------klqiwdt 67 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGV---EFGTR-------I-IEVSGQKI---------KLQIWDT 67 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhh--cCCcccce---eccee-------E-EEecCcEE---------EEEEeec
Confidence 35788899999999999999999887652 12222111 11110 0 11122211 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +++..+++.|.+.+-..++|+|..+..+-..+. ||...+... .-+|++.||.|+....+ ..++...+.
T Consensus 68 agq----erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fa 143 (215)
T KOG0097|consen 68 AGQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFA 143 (215)
T ss_pred ccH----HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHH
Confidence 997 788899999999999999999998766655553 444444433 34778889999875421 134444433
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+ ....+...||++|
T Consensus 144 ee--------ngl~fle~saktg 158 (215)
T KOG0097|consen 144 EE--------NGLMFLEASAKTG 158 (215)
T ss_pred hh--------cCeEEEEeccccc
Confidence 32 3566788899987
No 349
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.46 E-value=3.4e-07 Score=86.08 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
-.|+|+++|+.-+|||||+=.....++--... +|-...+ ..+.....+.+ -++.||||
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--sTlQASF----------~~kk~n~ed~r----------a~L~IWDT 69 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--STLQASF----------QNKKVNVEDCR----------ADLHIWDT 69 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH--HHHHHHH----------hhcccccccce----------eeeeeeec
Confidence 35899999999999999998887665431110 1110000 00111111111 25899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
.|. +++..+-.-|++.+|.+|+|+|..+..+.+.. .|...++. ....+++|.||+|+... ..+..+-.
T Consensus 70 AGQ----ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R~Vt~qeA 141 (218)
T KOG0088|consen 70 AGQ----ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----RQVTRQEA 141 (218)
T ss_pred cch----HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----hhhhHHHH
Confidence 997 55556666788999999999999876554443 35555554 34578999999998632 12222111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+. .....+.+||+.. .|+.+|...+.....+
T Consensus 142 e~YAes---vGA~y~eTSAk~N---------------------------~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 142 EAYAES---VGALYMETSAKDN---------------------------VGISELFESLTAKMIE 176 (218)
T ss_pred HHHHHh---hchhheecccccc---------------------------cCHHHHHHHHHHHHHH
Confidence 111222 2356788898774 6888777777655443
No 350
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=8.7e-07 Score=96.91 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHH--CCCCCCCCCCCccceeEEEEccCCccchh--hcccccCCCeEEeecCCCcccccEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALL--GKRYLKDGVVPTTNEITFLRFSDLASEEQ--QRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLl--g~~~~~~~~~~tT~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..+.+|+-+|.||||||...|+ |.-+...|.... -....+...+.... ++...... -++..+.. -.-++|
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~---rk~~~~a~SDWM~iEkqRGISVts--SVMqF~Y~-~~~iNL 85 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKG---RKSGKHAKSDWMEIEKQRGISVTS--SVMQFDYA-DCLVNL 85 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeee---ccCCcccccHHHHHHHhcCceEEe--eEEEeccC-CeEEec
Confidence 4689999999999999999876 333222111100 00000111111111 11111110 11111110 023899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+||||..+.. +-|.+.+.-+|..|.|+|+..+...+.+.+++-++-.+.|||-.+||+|....
T Consensus 86 LDTPGHeDFS----EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 86 LDTPGHEDFS----EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred cCCCCccccc----hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999985544 33666777799999999999999999999999999999999999999998754
No 351
>PTZ00099 rab6; Provisional
Probab=98.42 E-value=1.3e-06 Score=88.46 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=72.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~ 510 (921)
.+.||||||. ++...+...+++.||++|+|+|.+++.+..+. .++..+.. ...|+++|.||+|+.... -..
T Consensus 30 ~l~iwDt~G~----e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQ----ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEEECCCh----HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCH
Confidence 4899999997 34556677889999999999999986554443 35554432 346889999999986321 111
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++.... .. . ....++.+||+++ .|+.++.+.|.+.+.
T Consensus 106 ~e~~~~----~~-~---~~~~~~e~SAk~g---------------------------~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 EEGMQK----AQ-E---YNTMFHETSAKAG---------------------------HNIKVLFKKIAAKLP 142 (176)
T ss_pred HHHHHH----HH-H---cCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222111 11 1 1356889999987 577777777766554
No 352
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.41 E-value=3.5e-06 Score=88.56 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+...|+|+|++++|||||+|.|+|. .+.. .+..+||..+......... ..+ ..+++
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----------~~~-----------~~v~~ 64 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----------GKE-----------HAVLL 64 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----------CCc-----------ceEEE
Confidence 3457999999999999999999998 3322 1234677655443222110 000 25899
Q ss_pred EeCCCCChhhhH--HHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHh----------------hhcCCeEEEEEe
Q 002437 440 VDTPGTNVILQR--QQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYT----------------QQWKKKVVFVLN 499 (921)
Q Consensus 440 vDTPG~~~~~~~--~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l----------------~~~~~~vivVlN 499 (921)
+||||+++.... ......-.+. -+|++||.++... ...+.+.+..+ ....+.+++|+.
T Consensus 65 lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvR 142 (224)
T cd01851 65 LDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI--LGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVR 142 (224)
T ss_pred EecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc--cHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEe
Confidence 999999865331 2222222233 4899999998763 33443322211 112346778887
Q ss_pred CCCCC
Q 002437 500 KSDLY 504 (921)
Q Consensus 500 K~D~~ 504 (921)
-++..
T Consensus 143 D~~~~ 147 (224)
T cd01851 143 DFSLD 147 (224)
T ss_pred cCcCC
Confidence 76654
No 353
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.39 E-value=1.1e-06 Score=99.52 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=93.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...+|+++|..|+||||||-+|+.+++.+ .+.+.-..+++ ... ..++. -...+|||
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~I-Pad-----------vtPe~-----------vpt~ivD~ 63 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILI-PAD-----------VTPEN-----------VPTSIVDT 63 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCcccc-CCc-----------cCcCc-----------CceEEEec
Confidence 45799999999999999999999988643 22221111111 000 00111 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh-----cCCeEEEEEeCCCCCCChHH-HHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFE-LEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~-----~~~~vivVlNK~D~~~~~~~-~~~v~ 514 (921)
+-- ++......+.+++||+|++|.+.+++.|-.-. .||-.+++ .+.|+|+|.||+|....... .+...
T Consensus 64 ss~----~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~ 139 (625)
T KOG1707|consen 64 SSD----SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT 139 (625)
T ss_pred ccc----cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH
Confidence 842 33345567788999999999999886655544 47777765 44799999999999865322 22223
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-+...+.+. ..++.+||++-
T Consensus 140 ~pim~~f~Ei-----EtciecSA~~~ 160 (625)
T KOG1707|consen 140 LPIMIAFAEI-----ETCIECSALTL 160 (625)
T ss_pred HHHHHHhHHH-----HHHHhhhhhhh
Confidence 3334333332 45778888765
No 354
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.39 E-value=1.1e-07 Score=86.68 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=73.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~~~~ 511 (921)
.+.+|||.|. +++..++..|.++||++++++|..+..+..+.+ ||.+|.+.. ..+.++.||+|+... .
T Consensus 48 klqiwdtagq----erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e----r 119 (192)
T KOG0083|consen 48 KLQIWDTAGQ----ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE----R 119 (192)
T ss_pred EEEEeeccch----HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh----h
Confidence 4899999997 788899999999999999999999888777664 788887654 467899999998643 1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAK 544 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~ 544 (921)
.+...-.+.+.+.+ ..|+...||++|++..
T Consensus 120 ~v~~ddg~kla~~y---~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 120 AVKRDDGEKLAEAY---GIPFMETSAKTGFNVD 149 (192)
T ss_pred ccccchHHHHHHHH---CCCceeccccccccHh
Confidence 11111223333334 4789999999997643
No 355
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.37 E-value=6.8e-07 Score=85.87 Aligned_cols=118 Identities=23% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++++|+|..++||||+|...+..-+. .+...|.. +.+ .++.......- -.+.+|||
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifT-kdykktIg----vdf-------lerqi~v~~Ed----------vr~mlWdt 76 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYKKTIG----VDF-------LERQIKVLIED----------VRSMLWDT 76 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccc-cccccccc----hhh-------hhHHHHhhHHH----------HHHHHHHh
Confidence 4689999999999999999998843221 11111110 000 00000000000 02679999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
.|. ++++.++..|++.|.+.++|++..+..+.+- .++-+.+.. ...|.++|-||+|++.+
T Consensus 77 agq----eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 77 AGQ----EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred ccc----hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 997 7888999999999999999999886554443 234444443 34799999999999865
No 356
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=9.5e-07 Score=83.22 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=91.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+....|.+|+|||||+-..+..++-+ +|+...... +-|...+.. ....|+-+ .+.||
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr---vvY~s~gp~------g~gr~~ri---------hLQlW 72 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR---VVYNSSGPG------GGGRGQRI---------HLQLW 72 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccce---EEEeccCCC------CCCcceEE---------EEeee
Confidence 45678999999999987777655432 111111111 111111100 00011111 37899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||.|. +++..++..+.++|-.+++++|..+..+.-+. .|+.+++.+ ++.++++.||+|+... ..+.+
T Consensus 73 DTAGQ----ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~----R~Vs~ 144 (219)
T KOG0081|consen 73 DTAGQ----ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ----RVVSE 144 (219)
T ss_pred ccccH----HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh----hhhhH
Confidence 99997 78889999999999999999998865544443 477777643 3568899999998743 22222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+.+.+ ..|+|..||-++
T Consensus 145 ~qa~~La~ky---glPYfETSA~tg 166 (219)
T KOG0081|consen 145 DQAAALADKY---GLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHh---CCCeeeeccccC
Confidence 2222333333 488999999887
No 357
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.35 E-value=3.1e-06 Score=87.58 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=106.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc------Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD------RA-LFLIAERVDIAAAVNASGVLLSDQGLPA 171 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~------~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~ 171 (921)
++....++.+.++|++.+-+--.+-. ..+..+.+++.... |+ .++=-+..+.|.+.||+=+-=+.-+ .
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~~~---a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~--~ 99 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTNPF---ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN--R 99 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCcc---HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC--H
Confidence 47788899999999999888554333 34445555443310 22 3444567888888998755533322 2
Q ss_pred HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCC-CCEEEEcCCCccCh
Q 002437 172 IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVK-IPIFIMNASPLVDV 249 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~-~Pv~aiGGi~~~~~ 249 (921)
...+.... .+ + .+---|||+.|+.+| .+.|+||+.+=|. ...|+. .+.+....+ +|++++|||+++|+
T Consensus 100 ~v~~~~~~---~~--i--~~iPG~~T~~E~~~A-~~~Gad~vklFPa--~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~ 169 (213)
T PRK06552 100 ETAKICNL---YQ--I--PYLPGCMTVTEIVTA-LEAGSEIVKLFPG--STLGPSFIKAIKGPLPQVNVMVTGGVNLDNV 169 (213)
T ss_pred HHHHHHHH---cC--C--CEECCcCCHHHHHHH-HHcCCCEEEECCc--ccCCHHHHHHHhhhCCCCEEEEECCCCHHHH
Confidence 22222211 12 1 111236899999999 8999999999664 234555 577777776 99999999999999
Q ss_pred HHHHHcCCcEEEEeeccccc
Q 002437 250 SKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++|+.+++++++.+..
T Consensus 170 ~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 170 KDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred HHHHHCCCcEEEEchHHhCc
Confidence 99999999999988877543
No 358
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.35 E-value=1.9e-06 Score=88.32 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=101.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHH-HHHHHHhhc-CceEEec----CcHH-------HHHhCCCCeEEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAA-CLLKSVVKD-RALFLIA----ERVD-------IAAAVNASGVLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a-~~l~~~~~~-~~~~ivn----d~~d-------la~~~~a~GvHL~~ 166 (921)
...+.++.+.++|+.+|+++.+..+........ +.+..+++. +.+++++ +..+ .+...|+|+||+..
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 566888888899999999999766544332211 224444444 5565554 4343 67788999999988
Q ss_pred CCCC--------HHHHHHhcccCCCCccccCeEEEecCCHHHHHc--ccccCCCCEEEeCCC--CCC--CCCc---c-hh
Q 002437 167 QGLP--------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFN--ASSSEGADFLVCCFG--EGQ--KADV---I-EN 228 (921)
Q Consensus 167 ~~l~--------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~--A~~~~gaDyv~~gpv--Tk~--~~g~---~-~~ 228 (921)
.... ....|+.. ++ . .++..+|...+... + ...|+||+.+++. +.. .... . ..
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~----~~-~---~v~~~~~~~~~~~~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (200)
T cd04722 93 AVGYLAREDLELIRELREAV----PD-V---KVVVKLSPTGELAAAAA-EEAGVDEVGLGNGGGGGGGRDAVPIADLLLI 163 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhc----CC-c---eEEEEECCCCccchhhH-HHcCCCEEEEcCCcCCCCCccCchhHHHHHH
Confidence 8752 22334433 23 2 46666665443322 3 4679999999987 211 1111 1 23
Q ss_pred hhhhcCCCCEEEEcCCCc-cChHHHHHcCCcEEEEe
Q 002437 229 SLFTNVKIPIFIMNASPL-VDVSKFLKSGASGFVIS 263 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~ 263 (921)
.+....++||++.|||+. +++.++.++||++|.+.
T Consensus 164 ~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 164 LAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 445667899999999988 99999999999999753
No 359
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=4.8e-07 Score=101.95 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=72.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC-----CC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY-----LK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~-----~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
...++|+|.+|+|||||||+|++... .. +....||..+..+.. ..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---------------------------~~~~ 206 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---------------------------DDGH 206 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---------------------------CCCC
Confidence 36899999999999999999998643 12 222334444333221 1257
Q ss_pred EEEeCCCCChhhhHHHHH----HHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 438 IIVDTPGTNVILQRQQRL----TEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~----~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
.++||||+.....-..-+ ..... .....+.|.++..+.+....+..+..+......+.+.+++.+.... -..+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~-t~~~ 285 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHR-TKLE 285 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEe-echh
Confidence 899999995321111111 11111 3456788888877665544444344444444556677777665543 2223
Q ss_pred HHHHHHHHH
Q 002437 512 EAISFVKEN 520 (921)
Q Consensus 512 ~v~~~~~~~ 520 (921)
...+.+.+.
T Consensus 286 ~a~~~~~~~ 294 (360)
T TIGR03597 286 NADELYNKH 294 (360)
T ss_pred hhHHHHHhh
Confidence 344444443
No 360
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.34 E-value=2.2e-06 Score=79.38 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+...+|..+|-.|+|||||+..|.+.+. ....||.. +...... .+|.+ .++++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~--~hltpT~G-Fn~k~v~-------------~~g~f----------~Lnvw 67 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP--RHLTPTNG-FNTKKVE-------------YDGTF----------HLNVW 67 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh--hhccccCC-cceEEEe-------------ecCcE----------EEEEE
Confidence 34678999999999999999999999873 34444432 2221111 12211 48999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-----HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-----VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-----~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
|..|.-++ .-.+.+|+.+.|.+|||+|..+.-..++. ++++..+-...|+.+..||-|++-.
T Consensus 68 DiGGqr~I----RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 68 DIGGQRGI----RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ecCCcccc----chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 99997544 34688999999999999996643222222 2344444566899999999998744
No 361
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3e-06 Score=81.00 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=76.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...-+++|+|--|||||||++.|-.++...- -.-||+....+. . -.++-
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig-------------------~----------m~ftt 68 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIG-------------------G----------MTFTT 68 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheec-------------------C----------ceEEE
Confidence 3556899999999999999999987764321 112333332221 1 13788
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH----HHHHHHh-hhcCCeEEEEEeCCCCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE----VVFLRYT-QQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e----~~~l~~l-~~~~~~vivVlNK~D~~~~ 506 (921)
+|.-|. ......+.+|+..+|.|+|.+|+-+.....+ .+.+-.+ .-...|+++..||+|....
T Consensus 69 ~DLGGH----~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 69 FDLGGH----LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred EccccH----HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999995 4556789999999999999999975432222 2222222 2356899999999999765
No 362
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.31 E-value=1e-06 Score=94.89 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=67.4
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhh-----cCCCCEEEEcCC
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFT-----NVKIPIFIMNAS 244 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~-----~~~~Pv~aiGGi 244 (921)
+..+|...+ +. + .|+++|||++|+.+| ...|||||.|++. +++ .+++.+ .-++|+.|+|||
T Consensus 186 v~~~r~~~~---~~-~---~I~VEv~tleea~eA-~~~GaD~I~LDn~-----~~e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 186 ITRIRQRIP---YP-L---TIEVETETLEQVQEA-LEYGADIIMLDNM-----PVDLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHhCC---CC-C---EEEEECCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 456677663 34 2 699999999999999 8999999999976 222 222222 347899999999
Q ss_pred CccChHHHHHcCCcEEEEeeccccc
Q 002437 245 PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 ~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|++|+.++.++|+++|++++.....
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~sa 277 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITRS 277 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhCC
Confidence 9999999999999999887765543
No 363
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.31 E-value=3.5e-06 Score=90.57 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=91.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---------------CccceeEEEEccCCccchhhcccccCCCe
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV---------------PTTNEITFLRFSDLASEEQQRCERHPDGQ 424 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---------------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~ 424 (921)
..+....|++.|+.++|||||+-+|.-.+.- .+.. .-|..++.--|+ +.+|.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~G------------f~dgk 179 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYG------------FDDGK 179 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEE------------ecCCc
Confidence 3456789999999999999999988632211 0111 112333322222 12222
Q ss_pred EEeecCCCc------------ccccEEEeCCCCChhhhHHHHHHHH-hc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhc
Q 002437 425 YICYLPSPI------------LKEMIIVDTPGTNVILQRQQRLTEE-FV-PRADLVLFVISADRPLTESEVVFLRYTQQW 490 (921)
Q Consensus 425 ~~~~~p~~~------------l~~l~lvDTPG~~~~~~~~~~~~~~-~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~ 490 (921)
+. .+.+|+ -+-+.||||-|. +.+-..+.+ .+ ++.|..++|+.++++.+...++.|-.+...
T Consensus 180 ~~-rlknPld~aE~~~vv~~aDklVsfVDtvGH----EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~ 254 (527)
T COG5258 180 VV-RLKNPLDEAEKAAVVKRADKLVSFVDTVGH----EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM 254 (527)
T ss_pred eE-eecCcccHHHHhHhhhhcccEEEEEecCCc----cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh
Confidence 21 111111 022789999996 333333333 33 789999999999999988888888888888
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
..|+|+|++|+|..++ +.+..+.+.+...++
T Consensus 255 ~lPviVvvTK~D~~~d-dr~~~v~~ei~~~Lk 285 (527)
T COG5258 255 ELPVIVVVTKIDMVPD-DRFQGVVEEISALLK 285 (527)
T ss_pred cCCEEEEEEecccCcH-HHHHHHHHHHHHHHH
Confidence 9999999999999965 455555555544443
No 364
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.31 E-value=2.4e-06 Score=88.12 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=63.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC-hHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN-AFELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~-~~~~~~v~ 514 (921)
+.++|+|.|.. ..... ... -+|.+|.|+|+.+....... .- .+....-++|+||+|+.+. ..+++.+.
T Consensus 93 D~iiIEt~G~~-l~~~~----~~~--l~~~~i~vvD~~~~~~~~~~-~~---~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDN-LSATF----SPE--LADLTIFVIDVAAGDKIPRK-GG---PGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCC-ccccc----chh--hhCcEEEEEEcchhhhhhhh-hH---hHhhhccEEEEEhhhccccccccHHHHH
Confidence 68899999953 11111 111 26889999999864432211 01 1122234889999999842 22334333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.++ .+ . ...++|++||+++ .|++++.+++.+.+.
T Consensus 162 ~~~~----~~-~-~~~~i~~~Sa~~g---------------------------~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAK----KM-R-GEKPFIFTNLKTK---------------------------EGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHH----Hh-C-CCCCEEEEECCCC---------------------------CCHHHHHHHHHhhcC
Confidence 3333 32 2 3588999999998 799999998886643
No 365
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=7.9e-06 Score=76.13 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=73.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHHHHHHHhhh---cCCeEEEEEeCCCCCCChHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL--TESEVVFLRYTQQ---WKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~ 510 (921)
.+.++|.-|..+..+ .++.|..+.|.+|||+|.++.. +-+-.++...+.+ .+..++++.||.|.......-
T Consensus 63 k~~vwdLggqtSirP----yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~ 138 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRP----YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRS 138 (182)
T ss_pred cceeeEccCcccccH----HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHH
Confidence 378999999876544 5888999999999999988643 3333334443432 447888999999987542221
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....-...++ .....||..||..+ .|++...+++.+-+.
T Consensus 139 E~~~~L~l~~Lk----~r~~~Iv~tSA~kg---------------------------~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 139 EVLKMLGLQKLK----DRIWQIVKTSAVKG---------------------------EGLDPAMDWLQRPLK 179 (182)
T ss_pred HHHHHhChHHHh----hheeEEEeeccccc---------------------------cCCcHHHHHHHHHHh
Confidence 111111112222 23478999999876 688888888877665
No 366
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.28 E-value=1.8e-06 Score=88.58 Aligned_cols=26 Identities=46% Similarity=0.485 Sum_probs=23.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
...++++|.+|+|||||||+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 46799999999999999999998654
No 367
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.27 E-value=2e-05 Score=81.71 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=100.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe----cC----cHHHHHhCCCCeEEcCCCCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI----AE----RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv----nd----~~dla~~~~a~GvHL~~~~l~ 170 (921)
++..+.++.+.++ ++++-+--+-.. ..=.+..+.+++... +.++++ ++ ..+.+.+.|+|++++.....+
T Consensus 13 ~~~~~~~~~l~~~-i~~ieig~~~~~-~~g~~~i~~i~~~~~-~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~ 89 (202)
T cd04726 13 EEALELAKKVPDG-VDIIEAGTPLIK-SEGMEAVRALREAFP-DKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL 89 (202)
T ss_pred HHHHHHHHHhhhc-CCEEEcCCHHHH-HhCHHHHHHHHHHCC-CCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH
Confidence 3556666666556 888777111100 000233444444321 344444 32 246677899999987554432
Q ss_pred ---HHHHHHhcccCCCCccccCeEE---EecCCHHHHHcccccCCCCEEEeCCC----CCC-CCCcc-hhhhhhcCCCCE
Q 002437 171 ---AIVARNTMKDSMSESVVLPLVG---RNVQTLDAAFNASSSEGADFLVCCFG----EGQ-KADVI-ENSLFTNVKIPI 238 (921)
Q Consensus 171 ---~~~~r~~~~~~~~~~~~~~~ig---~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~-~~g~~-~~~~~~~~~~Pv 238 (921)
....+.... .+ . .++ .++++..++.++ ...|+||+.++|. ++. ..+.. .+.+.+..++|+
T Consensus 90 ~~~~~~i~~~~~---~g-~---~~~v~~~~~~t~~e~~~~-~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 161 (202)
T cd04726 90 STIKKAVKAAKK---YG-K---EVQVDLIGVEDPEKRAKL-LKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKV 161 (202)
T ss_pred HHHHHHHHHHHH---cC-C---eEEEEEeCCCCHHHHHHH-HHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCE
Confidence 111222110 12 2 234 588899998887 7889999999986 221 22233 355555568999
Q ss_pred EEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 239 FIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 239 ~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.|||+++|+.++.++||+++++.++.++.
T Consensus 162 ~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~ 192 (202)
T cd04726 162 AVAGGITPDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred EEECCcCHHHHHHHHhcCCCEEEEeehhcCC
Confidence 9999999999999999999999999988653
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.26 E-value=7.8e-07 Score=87.26 Aligned_cols=27 Identities=44% Similarity=0.492 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLK 391 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~ 391 (921)
.+++|+|.+|+|||||||+|++.....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~ 62 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK 62 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh
Confidence 689999999999999999999985544
No 369
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.25 E-value=5.6e-06 Score=88.96 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccc
Q 002437 491 KKKVVFVLNKSDLYQN-AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT 569 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg 569 (921)
...-++|+||+|+.+. ..+++...+.++. +. +..+|+++||+++ .|
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~----ln--p~a~I~~vSA~tG---------------------------eG 276 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE----VN--PEIEIILISATSG---------------------------EG 276 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh----hC--CCCcEEEEECCCC---------------------------CC
Confidence 4567899999999853 2345555444433 22 3578999999987 68
Q ss_pred hHHHHHHHHH
Q 002437 570 FDKLEKLLYS 579 (921)
Q Consensus 570 ~~~L~~~l~~ 579 (921)
++.|.++|.+
T Consensus 277 ld~L~~~L~~ 286 (290)
T PRK10463 277 MDQWLNWLET 286 (290)
T ss_pred HHHHHHHHHH
Confidence 8888888865
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.24 E-value=2.7e-06 Score=84.20 Aligned_cols=57 Identities=39% Similarity=0.499 Sum_probs=42.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....+++++|.+|+|||||+|+|++....+.+. .+||.....+... ..+.++
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~li 150 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---------------------------NKIKLL 150 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---------------------------CCEEEE
Confidence 356889999999999999999999987655444 4566554443321 248999
Q ss_pred eCCCC
Q 002437 441 DTPGT 445 (921)
Q Consensus 441 DTPG~ 445 (921)
||||+
T Consensus 151 DtPG~ 155 (155)
T cd01849 151 DTPGI 155 (155)
T ss_pred ECCCC
Confidence 99995
No 371
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.23 E-value=2e-05 Score=82.88 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=99.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCce-------------EEecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-------------FLIAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~-------------~ivnd---~~dla~~~~a~GvH 163 (921)
...+.+..+..+|+..+-+.. .+..+.+++.. ..+ +++.. .++.|.+.|+|-|-
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~--~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV--DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC--CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 455666667789988888732 23334444422 223 33322 47788889999554
Q ss_pred cCCCC------CCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC-----CCCcc-hh
Q 002437 164 LSDQG------LPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ-----KADVI-EN 228 (921)
Q Consensus 164 L~~~~------l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~-----~~g~~-~~ 228 (921)
+.... ... ...+.... . ++ . .+...+|+.+++..+ ...|+||+.+++. |.. ..+.. ..
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~-~-~~-i---~vi~~v~t~ee~~~a-~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~ 166 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKE-Y-PG-Q---LLMADCSTLEEGLAA-QKLGFDFIGTTLSGYTEETKKPEEPDFALLK 166 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHh-C-CC-C---eEEEeCCCHHHHHHH-HHcCCCEEEcCCceeecCCCCCCCcCHHHHH
Confidence 42221 111 11222210 0 12 2 467889999999999 8999999988654 221 12232 46
Q ss_pred hhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 229 SLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++.+++||++.||| +++++.++.++||+||++.++.++.
T Consensus 167 ~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 167 ELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 7777789999999999 6999999999999999998887764
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.23 E-value=4.3e-06 Score=91.44 Aligned_cols=58 Identities=34% Similarity=0.557 Sum_probs=43.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||||+|++.+...++..| +|.....+... ..+.|+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---------------------------~~~~l~ 171 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---------------------------KGLELL 171 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---------------------------CcEEEE
Confidence 35689999999999999999999999876655544 45444333221 248999
Q ss_pred eCCCCC
Q 002437 441 DTPGTN 446 (921)
Q Consensus 441 DTPG~~ 446 (921)
||||+.
T Consensus 172 DtPGi~ 177 (287)
T PRK09563 172 DTPGIL 177 (287)
T ss_pred ECCCcC
Confidence 999984
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.22 E-value=2.2e-06 Score=83.46 Aligned_cols=29 Identities=45% Similarity=0.574 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV 394 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~ 394 (921)
+++|+|.+|+|||||+|+|++......+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 89999999999999999999987654333
No 374
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=5.5e-06 Score=90.17 Aligned_cols=58 Identities=38% Similarity=0.588 Sum_probs=43.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....+++|+|.+|+|||||||+|.+.+...++..| +|.....+..+ ..+.|+
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---------------------------~~~~l~ 168 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---------------------------DGLELL 168 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---------------------------CCEEEE
Confidence 35688999999999999999999998876665554 44443333221 248999
Q ss_pred eCCCCC
Q 002437 441 DTPGTN 446 (921)
Q Consensus 441 DTPG~~ 446 (921)
||||+.
T Consensus 169 DtPG~~ 174 (276)
T TIGR03596 169 DTPGIL 174 (276)
T ss_pred ECCCcc
Confidence 999983
No 375
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.17 E-value=2.5e-06 Score=94.44 Aligned_cols=57 Identities=37% Similarity=0.583 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+++|+|.||+|||||||+|+|.....++..| +|.....+... .++.|+|
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---------------------------~~i~LlD 183 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---------------------------DGIYLLD 183 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---------------------------CCeEEec
Confidence 3478999999999999999999999987766665 44444443322 2589999
Q ss_pred CCCCC
Q 002437 442 TPGTN 446 (921)
Q Consensus 442 TPG~~ 446 (921)
|||+-
T Consensus 184 tPGii 188 (322)
T COG1161 184 TPGII 188 (322)
T ss_pred CCCcC
Confidence 99984
No 376
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.5e-05 Score=92.65 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=85.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....+.++.+...|||||.+.|+-.+-..+..... .++|-+....+..|......+.+- ++..+ .-++|||+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlag-----kirfld~redeq~rgitmkss~is-~~~~~--~~~nlids 79 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAG-----KIRFLDTREDEQTRGITMKSSAIS-LLHKD--YLINLIDS 79 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhcc-----ceeeccccchhhhhceeeeccccc-cccCc--eEEEEecC
Confidence 45689999999999999999998654322111111 122333222223333332222211 11111 12899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
||.-++.. .+.....-+|..++++|+..+...+...++++....+..+++|+||+|.
T Consensus 80 pghvdf~s----evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 80 PGHVDFSS----EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred CCccchhh----hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99855433 3455567799999999999999999999999998889999999999993
No 377
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.14 E-value=2.3e-05 Score=82.29 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vnd---~~dla~~~~a~GvH 163 (921)
...+..+.++++|+..+-. +..+.. +.++..+ ..+++ +.. .++.|.+.|+|.|-
T Consensus 28 ~i~~~a~~~~~~G~~~~~~-----~~~~~~---~~i~~~~--~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~ 97 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA-----NGVEDI---RAIRARV--DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc-----CCHHHH---HHHHHhC--CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEE
Confidence 4567777888999988654 112222 2333221 23333 211 56788889999776
Q ss_pred cCCCCC------C-H---HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC-----CCCcc
Q 002437 164 LSDQGL------P-A---IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ-----KADVI 226 (921)
Q Consensus 164 L~~~~l------~-~---~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~-----~~g~~ 226 (921)
+....+ . . ..++.. + + . .+.+.+|+.+++..+ ...|+||+.+++. |.. .++..
T Consensus 98 ~~~~~~~~p~~~~~~~~i~~~~~~-g----~-~---~iiv~v~t~~ea~~a-~~~G~d~i~~~~~g~t~~~~~~~~~~~~ 167 (219)
T cd04729 98 LDATDRPRPDGETLAELIKRIHEE-Y----N-C---LLMADISTLEEALNA-AKLGFDIIGTTLSGYTEETAKTEDPDFE 167 (219)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHH-h----C-C---eEEEECCCHHHHHHH-HHcCCCEEEccCccccccccCCCCCCHH
Confidence 632221 1 1 122322 1 1 1 356688999999999 8999999987654 221 12233
Q ss_pred -hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++..++||++.||| +++++.++.++||+||.+.++.++.
T Consensus 168 ~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 168 LLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 467777779999999999 6899999999999999988887664
No 378
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.12 E-value=9.8e-06 Score=80.24 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeE
Q 002437 453 QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532 (921)
Q Consensus 453 ~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v 532 (921)
.++.+.++.++|++|+|+|+..+.+..+..+...+...++|+++|+||+|+... +...... .+... ...++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~-----~~~~~---~~~~~ 73 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-EVLEKWK-----SIKES---EGIPV 73 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-HHHHHHH-----HHHHh---CCCcE
Confidence 456777778899999999998876666656666566668999999999999743 2222111 11111 23579
Q ss_pred EEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 533 YPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 533 ~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++||+.+ .|+++|.+.+.+++.
T Consensus 74 ~~iSa~~~---------------------------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKER---------------------------LGTKILRRTIKELAK 96 (156)
T ss_pred EEEEcccc---------------------------ccHHHHHHHHHHHHh
Confidence 99999886 688888888877654
No 379
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.12 E-value=5.2e-06 Score=83.62 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=95.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+++|||...+|||+|+...... .+|....||.-+-..... ...+|..+ .+.||||.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v------------~V~dg~~v---------~L~LwDTA 61 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANV------------TVDDGKPV---------ELGLWDTA 61 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEE------------EecCCCEE---------EEeeeecC
Confidence 478999999999999999887765 446666665432111100 11123322 48999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhcC--CeEEEEEeCCCCCCChHHHHHHHH----
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQWK--KKVVFVLNKSDLYQNAFELEEAIS---- 515 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~~--~~vivVlNK~D~~~~~~~~~~v~~---- 515 (921)
|..+. ..+..--++.+|++|++++..++.+..+. .++.+++... .|+|+|.+|.|+..+...++....
T Consensus 62 GqedY----DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~ 137 (198)
T KOG0393|consen 62 GQEDY----DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLE 137 (198)
T ss_pred CCccc----ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence 98433 33222245899999999999998877764 4777887755 799999999999855322222211
Q ss_pred ----HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 ----FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ----~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+.+.++ ....+.+||++.
T Consensus 138 ~Vt~~~g~~lA~~ig--a~~y~EcSa~tq 164 (198)
T KOG0393|consen 138 PVTYEQGLELAKEIG--AVKYLECSALTQ 164 (198)
T ss_pred cccHHHHHHHHHHhC--cceeeeehhhhh
Confidence 11122333333 366788888764
No 380
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.11 E-value=6.2e-06 Score=87.82 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.3
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc-CCCeEEeecCCCccccc
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH-PDGQYICYLPSPILKEM 437 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~l~~l 437 (921)
.+..+.++++|||.||+|||||+|+|+.....+.+...||-++..-+....+......+... +.+.+. -.+
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vp--------a~l 86 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVP--------AFL 86 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceee--------eeE
Confidence 34556789999999999999999999999988888999998776654433332221111111 111111 138
Q ss_pred EEEeCCCCCh---hhhHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 438 IIVDTPGTNV---ILQRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 438 ~lvDTPG~~~---~~~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
+++|..|+-- ........-.+.++.+|+++.|+++..
T Consensus 87 ~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 87 TVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred EEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 9999999831 122233446667799999999999863
No 381
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=5.9e-06 Score=88.32 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
...+++|.+|+|||||||+|.+....
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~ 190 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQ 190 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhh
Confidence 37789999999999999999986433
No 382
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.08 E-value=5.5e-06 Score=91.98 Aligned_cols=102 Identities=17% Similarity=-0.036 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++++++|.||+|||||+|+|++... ....+.+||..+........+............... .| ..+.++|.|
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~---~~----a~i~~~Dia 75 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKV---PP----TTTEFVDIA 75 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCc---CC----ceEEEEecc
Confidence 6899999999999999999999987 556667787766553332222110000000000000 00 147999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+.... ..........++.+|++++|+++.
T Consensus 76 Glv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 76 GLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 984221 112234666789999999999985
No 383
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=7.5e-05 Score=69.42 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+.|+.+|-.++||||++--|.-.. +....||+. .+..+.|... .+.++|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~--~~~~ipTvGFnvetVtykN~--------------------------kfNvwd 67 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ--SVTTIPTVGFNVETVTYKNV--------------------------KFNVWD 67 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC--CcccccccceeEEEEEeeee--------------------------EEeeee
Confidence 35889999999999999998886543 223344443 1222222211 378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
..|.+ .....++.|....-.+|||+|+.....-++ ++-|+.+ .. ...++++..||-|+... -..+++.+.
T Consensus 68 vGGqd----~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A-~~pqei~d~ 142 (180)
T KOG0071|consen 68 VGGQD----KIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA-MKPQEIQDK 142 (180)
T ss_pred ccCch----hhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc-cCHHHHHHH
Confidence 99974 455679999999999999999875432222 2233333 22 33588889999999754 122333333
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. +.. +....-.+.|.++..+
T Consensus 143 le--Le~-~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 143 LE--LER-IRDRNWYVQPSCALSG 163 (180)
T ss_pred hc--ccc-ccCCccEeeccccccc
Confidence 22 111 2223456778887765
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=98.07 E-value=4.2e-06 Score=93.35 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV 395 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~ 395 (921)
.++|+|.+|+|||||||+|++...+.++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i 236 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV 236 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc
Confidence 478999999999999999999876654433
No 385
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.00 E-value=2.3e-05 Score=77.67 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.3
Q ss_pred HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 457 EEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 457 ~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
.+.+.++|+|++|+|+..+....+..+.+.+... ++|+++|+||+|+.+. ++.......+ .+.+ ...+++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~-~~~~~~~~~~----~~~~---~~~~~~ 74 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT-WVTARWVKIL----SKEY---PTIAFH 74 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH-HHHHHHHHHH----hcCC---cEEEEE
Confidence 4567899999999999988766666666666543 4899999999999743 3332222222 2211 223688
Q ss_pred ecccch
Q 002437 535 VSARST 540 (921)
Q Consensus 535 vSA~~~ 540 (921)
+||+.+
T Consensus 75 iSa~~~ 80 (157)
T cd01858 75 ASINNP 80 (157)
T ss_pred eecccc
Confidence 999876
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=1.1e-05 Score=91.10 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.|+|.+|+|||||||+|++.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 57999999999999999999965
No 387
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.99 E-value=1.1e-05 Score=82.05 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=61.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.-+|+++|.|++|||||+..+++......++.+||-... .+.|.. -++.++|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------------------------a~IQllD 115 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------------------------ANIQLLD 115 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------------------------ceEEEec
Confidence 358999999999999999999998766667777764322 222221 1589999
Q ss_pred CCCCChhhhHH---HHHHHHhcCCCCEEEEEEeCCCCC
Q 002437 442 TPGTNVILQRQ---QRLTEEFVPRADLVLFVISADRPL 476 (921)
Q Consensus 442 TPG~~~~~~~~---~~~~~~~l~~aD~il~V~da~~~~ 476 (921)
.||+-....+. ........+.||+|++|+|+....
T Consensus 116 LPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 116 LPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred CcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 99984322111 222334558899999999998653
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.98 E-value=1.3e-05 Score=89.41 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV 394 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~ 394 (921)
.++|+|.+|+|||||||+|++.....++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~ 202 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGK 202 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccc
Confidence 48999999999999999999886655443
No 389
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.95 E-value=1.5e-05 Score=80.25 Aligned_cols=56 Identities=38% Similarity=0.583 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++++++|.+|+|||||+|+|++......+..+ +|.....+... ..+.++|
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---------------------------~~~~~iD 166 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---------------------------PGIYLLD 166 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---------------------------CCEEEEE
Confidence 4578999999999999999999998765544433 44333333221 2489999
Q ss_pred CCCC
Q 002437 442 TPGT 445 (921)
Q Consensus 442 TPG~ 445 (921)
|||+
T Consensus 167 tpG~ 170 (171)
T cd01856 167 TPGI 170 (171)
T ss_pred CCCC
Confidence 9997
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=4.3e-05 Score=78.33 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 452 QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 452 ~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
....+..++.++|++++|+|+.++.......+.. ...++|+++|+||+|+.......+..............+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence 3567888999999999999998765433333322 23468999999999997543222222222211111111222246
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+|++||+.+ .|+++|.+.+.+.+
T Consensus 102 i~~vSA~~~---------------------------~gi~eL~~~l~~~l 124 (190)
T cd01855 102 VILISAKKG---------------------------WGVEELINAIKKLA 124 (190)
T ss_pred EEEEECCCC---------------------------CCHHHHHHHHHHHh
Confidence 999999886 68888888887754
No 391
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.95 E-value=1.1e-05 Score=86.14 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
..++|+|.+|+|||||||+|++.....++
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~ 149 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVN 149 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccc
Confidence 47889999999999999999998655443
No 392
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.8e-05 Score=83.21 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC------ccchhhcccccCCCeEEeecCC-------
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL------ASEEQQRCERHPDGQYICYLPS------- 431 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~p~------- 431 (921)
.+++|+|...+|||||+-.|+...+-. .........+++... .....+..-....|.++.|...
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDn---G~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDN---GNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccC---CCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 689999999999999999887654321 111111111111110 0000000000011222222221
Q ss_pred -CcccccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 432 -PILKEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 432 -~~l~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
..-+-+++||..|.. ++...+...+ -..|..++|++++.+.+....+.|-.+...+.|+|++++|+|+...
T Consensus 245 e~SSKlvTfiDLAGh~----kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHA----KYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhhcceEEEeecccch----hhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc
Confidence 111348999999952 2222222222 3468889999999999888888888888899999999999999965
No 393
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.93 E-value=2.7e-05 Score=78.60 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=87.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+|.++|.+|+||||+=..+....+... .....|-++ .++.. .--|.+ -+.++|+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidv---eHsh~----------RflGnl----------~LnlwDc 60 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDV---EHSHV----------RFLGNL----------VLNLWDC 60 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCccee---eehhh----------hhhhhh----------eeehhcc
Confidence 45799999999999998776664332210 011112111 11110 001111 2678999
Q ss_pred CCCChhhhHHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHH----HHHhhhcC--CeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQRQQRL-TEEFVPRADLVLFVISADRPLTESEVVF----LRYTQQWK--KKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~----l~~l~~~~--~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.|.....+..... -.......++++||+|++....+.+.+. |+.+.+.. .++++.+.|+|++.. +..+.+..
T Consensus 61 Ggqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~-d~r~~if~ 139 (295)
T KOG3886|consen 61 GGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE-DARELIFQ 139 (295)
T ss_pred CCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc-chHHHHHH
Confidence 9986554444332 2344588999999999997766666654 34444433 479999999999864 33344444
Q ss_pred HHHHHHHHhhCCCCCeEEEecc
Q 002437 516 FVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.....+..+.......+|+.|-
T Consensus 140 ~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 140 RRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred HHHHHHHHhcccccccccccch
Confidence 4444444443333455555554
No 394
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.93 E-value=2.7e-05 Score=77.31 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=38.6
Q ss_pred ccEEEeCCCCChhhhHHHHH----HHHhcCCCCEEEEEEeCCCCCCHH--HHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRL----TEEFVPRADLVLFVISADRPLTES--EVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~----~~~~l~~aD~il~V~da~~~~t~~--e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
+..+|||||+.....-.... .....-+.|.+++|+|+.+..... ...+..++.. --++|+||+|+
T Consensus 88 d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 88 DRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred CEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 57999999996443322221 222345689999999987532211 1112333333 23669999995
No 395
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.007 Score=62.99 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.|.|.-+|++|-||||||+.|++.++-.....++-..+ .......+ ...+.+. -.++++||.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V---~L~~~Tye-------lqEsnvr--------lKLtiv~tv 103 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV---KLQANTYE-------LQESNVR--------LKLTIVDTV 103 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc---eeecchhh-------hhhcCee--------EEEEEEeec
Confidence 58999999999999999999999876422222111111 11100000 0001110 148999999
Q ss_pred CCChhh--------------hHHHHHHHHhc-----------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCeEEEE
Q 002437 444 GTNVIL--------------QRQQRLTEEFV-----------PRADLVLFVISAD-RPLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 444 G~~~~~--------------~~~~~~~~~~l-----------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~vivV 497 (921)
|+++-. ..++....+.+ .+.++++|.+... +.+..-++-.++.+. .+.++|.|
T Consensus 104 GfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPv 182 (406)
T KOG3859|consen 104 GFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPV 182 (406)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHH
Confidence 996421 11111111111 4678999999876 344444444455543 45789999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
+-|.|... .+++......+...+.
T Consensus 183 IAKaDtis-K~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 183 IAKADTIS-KEELKRFKIKIMSELV 206 (406)
T ss_pred HHHhhhhh-HHHHHHHHHHHHHHHH
Confidence 99999984 4666665555554443
No 396
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.86 E-value=5.1e-05 Score=75.12 Aligned_cols=31 Identities=39% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
...+++++|.+|+||||++|.|.+......+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~ 130 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS 130 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 4578899999999999999999987654433
No 397
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.85 E-value=0.00026 Score=78.29 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=90.5
Q ss_pred HHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC----------------CCCCC---CccceeEEEEccCCccchhhc
Q 002437 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL----------------KDGVV---PTTNEITFLRFSDLASEEQQR 416 (921)
Q Consensus 356 ~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~----------------~~~~~---~tT~~~~~~~~~~~~~~~~~~ 416 (921)
+...+......|+|||+.-+||||||..+...-++ |.+.. -+|..+.++
T Consensus 9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFi------------ 76 (492)
T PF09547_consen 9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFI------------ 76 (492)
T ss_pred HHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCccc------------
Confidence 34456778899999999999999999998643333 22111 122222221
Q ss_pred ccccCCCeEEeecCCCcccccEEEeCCCCC---hh------hhH----------------HHHHHHHhcCCCCEEEEEEe
Q 002437 417 CERHPDGQYICYLPSPILKEMIIVDTPGTN---VI------LQR----------------QQRLTEEFVPRADLVLFVIS 471 (921)
Q Consensus 417 ~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~---~~------~~~----------------~~~~~~~~l~~aD~il~V~d 471 (921)
|+.-+.+.+....--++.+|||-|+- +. .++ ..--|++.+.+-.-|=+|+.
T Consensus 77 ----P~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVT 152 (492)
T PF09547_consen 77 ----PNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVT 152 (492)
T ss_pred ----CCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEe
Confidence 11112222222222358899998871 00 011 01114445555444545554
Q ss_pred CCCCC--------CHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 472 ADRPL--------TESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 472 a~~~~--------t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
++..+ -+.+.+.+..|+..++|+++++|-.+-.. ++-.+ +...+.+-+ +++|+++++.+
T Consensus 153 TDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s--~et~~----L~~eL~ekY---~vpVlpvnc~~ 219 (492)
T PF09547_consen 153 TDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS--EETQE----LAEELEEKY---DVPVLPVNCEQ 219 (492)
T ss_pred cCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--HHHHH----HHHHHHHHh---CCcEEEeehHH
Confidence 44323 24455688999999999999999877543 23233 333344434 58999999854
No 398
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.85 E-value=4.8e-05 Score=73.98 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=55.6
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeE
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v 532 (921)
.+.+.+.++|++++|+|+..+.+..+..+.+.+... ++|+++|+||+|+... +......+ .+.. ...++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~-~~~~~~~~----~~~~----~~~~i 74 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE-EQRKAWAE----YFKK----EGIVV 74 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH-HHHHHHHH----HHHh----cCCeE
Confidence 366778999999999999998877766766766655 7899999999999743 22222222 2222 23579
Q ss_pred EEecccch
Q 002437 533 YPVSARST 540 (921)
Q Consensus 533 ~~vSA~~~ 540 (921)
+++||+.+
T Consensus 75 i~iSa~~~ 82 (141)
T cd01857 75 VFFSALKE 82 (141)
T ss_pred EEEEecCC
Confidence 99999876
No 399
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4.8e-05 Score=79.46 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=83.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---Cc-----cceeEEEEccCCccc----hhhcccccCCCe--EEee
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV---PT-----TNEITFLRFSDLASE----EQQRCERHPDGQ--YICY 428 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---~t-----T~~~~~~~~~~~~~~----~~~~~~~~~~g~--~~~~ 428 (921)
....|+-+|..-.||||++.|+.|-....-... .. ......|...+.... +.......++.. -...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 467899999999999999999988532110000 00 000111111110000 000000000000 0011
Q ss_pred cC--CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC----CCCHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 429 LP--SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR----PLTESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 429 ~p--~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~----~~t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
.+ ..+++.+.+||+||.+-.. ..+.+-..-.|+.++++.++. |.|.+.+...+.++ -+.++++-||+|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLM----aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILM----ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHH----HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 11 2245679999999964211 111122233477788887664 33444333222222 267999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 503 LYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 503 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.......+ -.+++..-+... ..+..||+|+||.-.
T Consensus 191 li~e~~A~e-q~e~I~kFi~~t-~ae~aPiiPisAQlk 226 (466)
T KOG0466|consen 191 LIKESQALE-QHEQIQKFIQGT-VAEGAPIIPISAQLK 226 (466)
T ss_pred hhhHHHHHH-HHHHHHHHHhcc-ccCCCceeeehhhhc
Confidence 996532222 222222222221 236789999999764
No 400
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.84 E-value=6.6e-05 Score=73.56 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=39.2
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
.+++||||||.+. ....++..||.+|+|+..+ ..+-+-+........--++|+||+|
T Consensus 92 ~D~iiIDtaG~~~-------~~~~~~~~Ad~~ivv~tpe----~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ-------SEVDIASMADTTVVVMAPG----AGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh-------hhhhHHHhCCEEEEEECCC----chhHHHHhhhhHhhhcCEEEEeCCC
Confidence 3799999999741 1335778899999999877 2333333333334445688999998
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.83 E-value=1.9e-05 Score=88.47 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|++||.||+||||+||+|.|.+...++.+ ..|..+..+... ..+.|.|
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---------------------------~~v~LCD 365 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---------------------------PSVCLCD 365 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---------------------------CCceecC
Confidence 358999999999999999999999975544333 356666555443 2589999
Q ss_pred CCCC
Q 002437 442 TPGT 445 (921)
Q Consensus 442 TPG~ 445 (921)
|||+
T Consensus 366 CPGL 369 (562)
T KOG1424|consen 366 CPGL 369 (562)
T ss_pred CCCc
Confidence 9998
No 402
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.81 E-value=0.00027 Score=75.91 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=102.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCc------HHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAER------VDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~------~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+...|++.+.+=+=+.+..........+..+++. +.+++++.- ..-+...||++|.++..-+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 666778888789998888866443221112223344444544 678888652 33344589999999875432
Q ss_pred --HHHHHHhcccCCCCccccCeEEEec---------------------CCH-HHHHcccccCCCCEEEeCCC----CCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNV---------------------QTL-DAAFNASSSEGADFLVCCFG----EGQK 222 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~---------------------h~~-~e~~~A~~~~gaDyv~~gpv----Tk~~ 222 (921)
.......+| ++ ++ .++..+ -+. +.+.++ ...|+|++++.++ |++.
T Consensus 111 ~~~~ei~~~~g---~~-~i--v~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~ii~~~i~~~g~~~g 183 (253)
T PRK02083 111 ELISEAADRFG---SQ-CI--VVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEV-EELGAGEILLTSMDRDGTKNG 183 (253)
T ss_pred HHHHHHHHHcC---CC-CE--EEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHH-HHcCCCEEEEcCCcCCCCCCC
Confidence 222333333 23 32 233322 133 445666 7889999999886 3444
Q ss_pred CCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHH-cCCcEEEEeeccc
Q 002437 223 ADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLK-SGASGFVISLEDL 267 (921)
Q Consensus 223 ~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~-~Ga~gva~~~a~~ 267 (921)
+.+. ..++++..++||+|.||+. ++++.++.+ .|++||.+..|..
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 4444 4778888899999999996 578988886 5999997766643
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.81 E-value=0.00015 Score=82.49 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||..............+ ....|.+++|+|+..+ .......+..++.-.+.-+|+||.|....
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECccCCCC
Confidence 3799999999864433332333333 2457899999998754 23344445555545677889999998654
No 404
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.78 E-value=8e-05 Score=78.44 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=61.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC--CCCCC----------------------------------CCCcc-hhhhhhc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC--FGEGQ----------------------------------KADVI-ENSLFTN 233 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g--pvTk~----------------------------------~~g~~-~~~~~~~ 233 (921)
+=+-|-|++|+.+| ..+|||+|.-= +.|.. .++++ +.++++.
T Consensus 117 fmad~~~l~EAlra-i~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~ 195 (287)
T TIGR00343 117 FVCGARDLGEALRR-INEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL 195 (287)
T ss_pred EEccCCCHHHHHHH-HHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh
Confidence 44457799999999 89999998532 11221 23444 4778888
Q ss_pred CCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++||+ |+||| +|+|+..++++|++||+|.++.++.
T Consensus 196 ~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks 234 (287)
T TIGR00343 196 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 234 (287)
T ss_pred CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 899998 99999 9999999999999999999999764
No 405
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=6.3e-05 Score=85.66 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=93.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....|.+.-.-.+||||+-+.++--.-. ..+...+. .+...+.+ ...++.......-..+.|. -..++||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~--~a~md~m~---~er~rgITiqSAAt~~~w~---~~~iNiI 109 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG--GATMDSME---LERQRGITIQSAATYFTWR---DYRINII 109 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccC--ceeeehHH---HHHhcCceeeeceeeeeec---cceeEEe
Confidence 4467999999999999999987632111 01111111 11111211 1122333333333333443 1369999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||..++.-+ +...++--|..|+|+++..+...+....++++++.+.|-+..+||+|.... ..-..++++...
T Consensus 110 DTPGHvDFT~E----VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa--~~~~~l~~i~~k 183 (721)
T KOG0465|consen 110 DTPGHVDFTFE----VERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA--SPFRTLNQIRTK 183 (721)
T ss_pred cCCCceeEEEE----ehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC--ChHHHHHHHHhh
Confidence 99998554322 445667789999999999888888888999999999999999999999876 334455555554
Q ss_pred HH
Q 002437 521 TM 522 (921)
Q Consensus 521 ~~ 522 (921)
+.
T Consensus 184 l~ 185 (721)
T KOG0465|consen 184 LN 185 (721)
T ss_pred cC
Confidence 43
No 406
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.75 E-value=0.00012 Score=77.06 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=63.3
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CCCCC---------------------------------CCCcc-hhhhhhc
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FGEGQ---------------------------------KADVI-ENSLFTN 233 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pvTk~---------------------------------~~g~~-~~~~~~~ 233 (921)
++=+-|-|++|+.+| .++|+|+|.-- ..|.. .++++ +..+++.
T Consensus 114 l~MAD~stleEal~a-~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~ 192 (283)
T cd04727 114 PFVCGARNLGEALRR-ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL 192 (283)
T ss_pred cEEccCCCHHHHHHH-HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh
Confidence 455567899999999 89999998532 12322 23444 5778888
Q ss_pred CCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++||+ |+||| +++|+..++++|++||+|.++.++.
T Consensus 193 ~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a 231 (283)
T cd04727 193 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 231 (283)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcC
Confidence 899997 99999 9999999999999999999999764
No 407
>PRK00098 GTPase RsgA; Reviewed
Probab=97.74 E-value=4.5e-05 Score=83.89 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=24.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKD 392 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~ 392 (921)
..++|+|.+|+|||||||+|+|.....+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~ 192 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT 192 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 4788999999999999999999765443
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00075 Score=78.02 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=47.5
Q ss_pred cccEEEeCCCCChhhhHHHH---HHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQR---LTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~---~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
.+++||||||.......... ...... ....++|+++... ..++ ++++.+... .+.-+|+||+|.... +
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~--~~a~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDEt~~---l 500 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR--QVTSLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDETGR---F 500 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh--cCCcEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcCccc---h
Confidence 46999999998533222111 111112 2346677777643 2332 345544443 567799999998644 2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
-.++..+.. ...+|.+++.
T Consensus 501 G~aLsv~~~--------~~LPI~yvt~ 519 (559)
T PRK12727 501 GSALSVVVD--------HQMPITWVTD 519 (559)
T ss_pred hHHHHHHHH--------hCCCEEEEeC
Confidence 333333222 2467777765
No 409
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.73 E-value=0.00038 Score=73.76 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=96.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCCCCH-
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQGLPA- 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~l~~- 171 (921)
+..+.++..-+.|++.+++=+=+......-.....+..+++. +.++++...+ +-+...|+++|=+|...+.-
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 556777777788998777654222111000112223344444 5678875422 22345689999998766542
Q ss_pred ---HHHHHhcccCCCCccccCeEEEec---------------------CC-HHHHHcccccCCCCEEEeCCCCC----CC
Q 002437 172 ---IVARNTMKDSMSESVVLPLVGRNV---------------------QT-LDAAFNASSSEGADFLVCCFGEG----QK 222 (921)
Q Consensus 172 ---~~~r~~~~~~~~~~~~~~~ig~S~---------------------h~-~~e~~~A~~~~gaDyv~~gpvTk----~~ 222 (921)
..+....+ .. .+ .+++.+ -+ .+.++.+ .+.|+|++.+..+++ +.
T Consensus 111 ~~~~~~~~~~~---~~-~i--~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~G~d~i~i~~i~~~g~~~g 183 (232)
T TIGR03572 111 DLIEEAARRFG---SQ-CV--VVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA-EQLGAGEILLNSIDRDGTMKG 183 (232)
T ss_pred HHHHHHHHHcC---Cc-eE--EEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEeCCCccCCcCC
Confidence 12222222 12 11 223332 11 3455666 789999999999833 22
Q ss_pred CCcc-hhhhhhcCCCCEEEEcCCC-ccChHH-HHHcCCcEEEEeec
Q 002437 223 ADVI-ENSLFTNVKIPIFIMNASP-LVDVSK-FLKSGASGFVISLE 265 (921)
Q Consensus 223 ~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~-~~~~Ga~gva~~~a 265 (921)
+.++ ...+++.+++||+|.|||+ ++++.. +...|++||++..|
T Consensus 184 ~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 184 YDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 3333 4788888899999999996 677888 88899999987765
No 410
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.72 E-value=0.00031 Score=74.53 Aligned_cols=162 Identities=10% Similarity=0.087 Sum_probs=101.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHHHHhhcCceEEecCc------HHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS---GKSVYEAACLLKSVVKDRALFLIAER------VDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~---~~~~~~~a~~l~~~~~~~~~~ivnd~------~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+..+...+.|++.+.+=+=+.. ...-.+.++++.+.+ +.++++++. .+-+...|||.|-++..-+.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4456666666789887777532111 111233444444443 577888653 33445679999999876543
Q ss_pred ----HHHHHHhcccCCCCccccCeEE---------------EecCCHHHHHcccccCCCCEEEeCCCCC----CCCCcc-
Q 002437 171 ----AIVARNTMKDSMSESVVLPLVG---------------RNVQTLDAAFNASSSEGADFLVCCFGEG----QKADVI- 226 (921)
Q Consensus 171 ----~~~~r~~~~~~~~~~~~~~~ig---------------~S~h~~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~- 226 (921)
...+.+.+| .+ ++ +++ .+-+++.++.+...+.|+|++++.+++. ..+..+
T Consensus 108 dp~~~~~i~~~~g---~~-~i--~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~ 181 (234)
T cd04732 108 NPELVKELLKEYG---GE-RI--VVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFEL 181 (234)
T ss_pred ChHHHHHHHHHcC---Cc-eE--EEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHH
Confidence 222333333 22 21 122 2345665544432678999999988733 223333
Q ss_pred hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..++++.+++||++.|||. ++++..+.+.|++||++.++.+..
T Consensus 182 i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 182 YKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4778888899999999997 567999999999999988877654
No 411
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.72 E-value=0.00014 Score=79.17 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 452 QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 452 ~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
....+.+.+..+|+||+|+|+..|.+..+..+.+.+. ++|+++|+||+|+.+. .......+.+ .. ...+
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~-~~~~~~~~~~----~~----~~~~ 79 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP-AVTKQWLKYF----EE----KGIK 79 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH-HHHHHHHHHH----HH----cCCe
Confidence 3445677889999999999999887766666656553 5899999999999743 2222222222 11 1257
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++++||+.+ .|+..|.+.+.+.+.
T Consensus 80 vi~iSa~~~---------------------------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 80 ALAINAKKG---------------------------KGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEEECCCc---------------------------ccHHHHHHHHHHHHH
Confidence 899999876 577888777776654
No 412
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.72 E-value=0.00014 Score=73.21 Aligned_cols=93 Identities=25% Similarity=0.270 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCC
Q 002437 451 RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENV 530 (921)
Q Consensus 451 ~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (921)
+..+.+.+.+.+||+|++|+|+..+....+..++..+. ++|+++|+||+|+... +......+. +.. ...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~-~~~~~~~~~----~~~----~~~ 76 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADP-KKTKKWLKY----FES----KGE 76 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCCh-HHHHHHHHH----HHh----cCC
Confidence 33445677889999999999998877655555555443 4799999999999743 222222111 111 235
Q ss_pred eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 531 TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 531 ~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.++++||+.+ .|+++|.+.+.+.+
T Consensus 77 ~vi~iSa~~~---------------------------~gi~~L~~~l~~~l 100 (171)
T cd01856 77 KVLFVNAKSG---------------------------KGVKKLLKAAKKLL 100 (171)
T ss_pred eEEEEECCCc---------------------------ccHHHHHHHHHHHH
Confidence 6899999876 67888887777654
No 413
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.69 E-value=0.00046 Score=71.75 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=92.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEec----C----cHHHHHhCCCCeE--EcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA----E----RVDIAAAVNASGV--LLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivn----d----~~dla~~~~a~Gv--HL~~~~l 169 (921)
+.+..++.+ ..|++++-+--. +....=.+..+.+++... +..++++ | ..+-+.+.|||-+ |......
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~~-l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~ 89 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGTP-LIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDA 89 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCCH-HHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHH
Confidence 556666665 899998887211 111111233444444321 2334422 2 3666777898864 6544221
Q ss_pred -C---HHHHHHhcccCCCCccccCeEEE-ecCC-HHHHHcccccCCCCEEEeCCCCC----CCCCcc-hhhhhhcCCCC-
Q 002437 170 -P---AIVARNTMKDSMSESVVLPLVGR-NVQT-LDAAFNASSSEGADFLVCCFGEG----QKADVI-ENSLFTNVKIP- 237 (921)
Q Consensus 170 -~---~~~~r~~~~~~~~~~~~~~~ig~-S~h~-~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~-~~~~~~~~~~P- 237 (921)
+ ...+++ .| - + ..++. +..+ .+++..| ...|+||+.+.|.++ .+.++. ..++.+..+.|
T Consensus 90 ~~~~~i~~~~~-~g---~--~--~~~~~~~~~t~~~~~~~~-~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~ 160 (206)
T TIGR03128 90 TIKGAVKAAKK-HG---K--E--VQVDLINVKDKVKRAKEL-KELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEAR 160 (206)
T ss_pred HHHHHHHHHHH-cC---C--E--EEEEecCCCChHHHHHHH-HHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCc
Confidence 1 122333 22 1 1 12332 3233 4788888 678999999988632 223333 35555555444
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.+.|||+++|+.++.++|++++++.++.++.
T Consensus 161 i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 161 VAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 55599999999999999999999999998764
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.68 E-value=7.9e-05 Score=81.48 Aligned_cols=29 Identities=45% Similarity=0.533 Sum_probs=24.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
..++++|.+|+|||||||+|+|.....++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 57999999999999999999997655433
No 415
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.68 E-value=0.00013 Score=72.09 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=47.1
Q ss_pred CEEEEEEeCCCCCCHHHHHHH-HHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 464 DLVLFVISADRPLTESEVVFL-RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l-~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|++|+|+|+..|.+..+..+. ..+...++|+++|+||+|+... ++..+... .+... ....++++||+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-~~~~~~~~----~~~~~---~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-EVLRKWLA----YLRHS---YPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-HHHHHHHH----HHHhh---CCceEEEEeccCC
Confidence 899999999988766555544 4566678999999999999743 32222221 12222 1357899999886
No 416
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.66 E-value=0.00015 Score=76.55 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=62.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC------C--------------------CCC---------CCCCcc-hhhhhhcC
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC------F--------------------GEG---------QKADVI-ENSLFTNV 234 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g------p--------------------vTk---------~~~g~~-~~~~~~~~ 234 (921)
+=+-|-|++|+.+| ..+|+|+|.-= . .|+ ..++++ +.++++..
T Consensus 124 fmad~~~l~EAlra-i~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~ 202 (293)
T PRK04180 124 FVCGARNLGEALRR-IAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG 202 (293)
T ss_pred EEccCCCHHHHHHH-HHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC
Confidence 44457799999999 89999998633 1 111 123444 57788888
Q ss_pred CCCEE--EEcCC-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 235 KIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 235 ~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
++||+ |+||| +|+|+..++++||+||+|.++.+..-.+
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP 243 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDP 243 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCH
Confidence 99997 99999 9999999999999999999999754333
No 417
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.65 E-value=0.00056 Score=73.09 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=99.4
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH---HHHHHHHHHHHHHhhcCceEEecCc---H---HHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG---KSVYEAACLLKSVVKDRALFLIAER---V---DIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~---~~~~~~a~~l~~~~~~~~~~ivnd~---~---dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++.+.+.|++.+.+=+=+.+. ..-.+.++++++.+ +.+++++.- . .-+...||++|=++..-+.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 56677777778899877665533221 11223344443332 678888752 2 2233468999998865442
Q ss_pred H-HHH---HHhcccCCCCccccCeEEEec---------------------CCHHHHHcccccCCCCEEEeCCCCC----C
Q 002437 171 A-IVA---RNTMKDSMSESVVLPLVGRNV---------------------QTLDAAFNASSSEGADFLVCCFGEG----Q 221 (921)
Q Consensus 171 ~-~~~---r~~~~~~~~~~~~~~~ig~S~---------------------h~~~e~~~A~~~~gaDyv~~gpvTk----~ 221 (921)
- ... -..++ .+ ++ .++..+ ...+.+..+ .+.|+|++.++.++. +
T Consensus 106 ~p~~~~~i~~~~~---~~-~i--~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l-~~~G~d~i~v~~i~~~g~~~ 178 (243)
T cd04731 106 NPELIREIAKRFG---SQ-CV--VVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV-EELGAGEILLTSMDRDGTKK 178 (243)
T ss_pred ChHHHHHHHHHcC---CC-CE--EEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH-HHCCCCEEEEeccCCCCCCC
Confidence 1 111 22222 22 22 233322 123455667 789999999988832 3
Q ss_pred CCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc-CCcEEEEeecccc
Q 002437 222 KADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS-GASGFVISLEDLS 268 (921)
Q Consensus 222 ~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~-Ga~gva~~~a~~~ 268 (921)
.+.++ ...+.+.+++||+|.|||. ++++..+++. |++||++.+|...
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 33333 4677778899999999994 8899999986 9999988777544
No 418
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.65 E-value=0.00057 Score=73.97 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHH---Hhc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE---EFV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~---~~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||............. +.+ ..+|.+++|+|+.. ............+.-...-+|+||.|....
T Consensus 156 D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 156 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVGLTGIILTKLDGTAK 232 (272)
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCCCCEEEEEccCCCCC
Confidence 6899999998643322221122 222 24899999999974 333333333333323456789999998755
No 419
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.63 E-value=0.00011 Score=75.50 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||.+...........+++ ...+-+++|++++.. .++...+....+.-.+-=+++||.|...... .+
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G---~~ 159 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLEQALAFYEAFGIDGLILTKLDETARLG---AL 159 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCEEEEESTTSSSTTH---HH
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHHHHHHHhhcccCceEEEEeecCCCCcc---cc
Confidence 5999999998644433323333332 257889999999854 3333333333332223356799999876532 22
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
...... ...||-+++.=
T Consensus 160 l~~~~~--------~~~Pi~~it~G 176 (196)
T PF00448_consen 160 LSLAYE--------SGLPISYITTG 176 (196)
T ss_dssp HHHHHH--------HTSEEEEEESS
T ss_pred eeHHHH--------hCCCeEEEECC
Confidence 222221 24778777753
No 420
>PRK12289 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00021 Score=79.86 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHH-HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPL-TESE-VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e-~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
.++...+.+..+.++|.+++|+|+.++. .... ..++..+...+.|+++|+||+|+... ++.+... +.+..
T Consensus 76 lpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~-~~~~~~~----~~~~~--- 147 (352)
T PRK12289 76 LPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP-TEQQQWQ----DRLQQ--- 147 (352)
T ss_pred eccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh-HHHHHHH----HHHHh---
Confidence 4555666777789999999999998654 3332 34566666678999999999999843 2222222 22221
Q ss_pred CCCCeEEEecccch
Q 002437 527 IENVTIYPVSARST 540 (921)
Q Consensus 527 ~~~~~v~~vSA~~~ 540 (921)
.+.+++++||+.+
T Consensus 148 -~g~~v~~iSA~tg 160 (352)
T PRK12289 148 -WGYQPLFISVETG 160 (352)
T ss_pred -cCCeEEEEEcCCC
Confidence 2457999999886
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.60 E-value=0.00067 Score=75.01 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=49.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHH---hc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEE---FV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~---~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
+++||||||.........+.... .+ ...|-+++|+|+..+. ....-.....+.-...-+|+||.|.....
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKlD~t~~~ 275 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKLDGTAKG 275 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECCCCCCCc
Confidence 69999999985432221111111 11 3467899999998532 22221222222234567899999976442
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
-.+...... ...||.+++.
T Consensus 276 ---G~~l~~~~~--------~~~Pi~~v~~ 294 (318)
T PRK10416 276 ---GVVFAIADE--------LGIPIKFIGV 294 (318)
T ss_pred ---cHHHHHHHH--------HCCCEEEEeC
Confidence 222222211 1478988884
No 422
>PRK14974 cell division protein FtsY; Provisional
Probab=97.59 E-value=0.00055 Score=75.93 Aligned_cols=89 Identities=20% Similarity=0.134 Sum_probs=50.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||..............+. ...|.+++|+|+..+ ....+........-..--+++||.|...... .+
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G---~~ 298 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDADAKGG---AA 298 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCCCCcc---HH
Confidence 6899999998633222222222222 357899999999643 2222222333233345678999999875522 22
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
...... ...||.+++.
T Consensus 299 ls~~~~--------~~~Pi~~i~~ 314 (336)
T PRK14974 299 LSIAYV--------IGKPILFLGV 314 (336)
T ss_pred HHHHHH--------HCcCEEEEeC
Confidence 222211 1478888874
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.57 E-value=0.00022 Score=76.17 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
.++...+++.++..+|.+++|+|+.+|. +.... .++..+...+.|+++|+||+|+.... ... ....+.+..
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~-~~~---~~~~~~~~~--- 95 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE-DME---KEQLDIYRN--- 95 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH-HHH---HHHHHHHHH---
Confidence 4555666777899999999999998765 55444 35555666789999999999997542 111 111122222
Q ss_pred CCCCeEEEecccch
Q 002437 527 IENVTIYPVSARST 540 (921)
Q Consensus 527 ~~~~~v~~vSA~~~ 540 (921)
...+++.+||+++
T Consensus 96 -~g~~v~~~SAktg 108 (245)
T TIGR00157 96 -IGYQVLMTSSKNQ 108 (245)
T ss_pred -CCCeEEEEecCCc
Confidence 2468999999987
No 424
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.54 E-value=0.0003 Score=77.01 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=66.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
-||.. ......+.+.+..+|+||+|+|+..+.+..+..+.+.+. ++|+++|+||+|+.+. ...+...+.+.
T Consensus 7 fpgHm---~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-~~~~~~~~~~~--- 77 (287)
T PRK09563 7 FPGHM---AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-EVTKKWIEYFE--- 77 (287)
T ss_pred cHHHH---HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-HHHHHHHHHHH---
Confidence 36642 233344677789999999999999887766555555443 6899999999999643 22222222221
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ...+++++|++.+ .|+..|.+.+.+.+.
T Consensus 78 -~----~~~~vi~vSa~~~---------------------------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 -E----QGIKALAINAKKG---------------------------QGVKKILKAAKKLLK 106 (287)
T ss_pred -H----cCCeEEEEECCCc---------------------------ccHHHHHHHHHHHHH
Confidence 1 1357899999876 577777777766654
No 425
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.53 E-value=0.00076 Score=75.54 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=64.5
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhh----cCCeEEEEEeCC
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-----------TESEVVFLRYTQQ----WKKKVVFVLNKS 501 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~----~~~~vivVlNK~ 501 (921)
+.++|..|.. .....+..++..+++||||+|.+... ..+....++.+.. .+.|+++++||.
T Consensus 186 ~~~~DvgGqr----~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 186 FRMFDVGGQR----SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred EEEEecCCch----hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 6789999963 33456777889999999999987521 1222334555443 347999999999
Q ss_pred CCCCC----------------hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccc
Q 002437 502 DLYQN----------------AFELEEAISFVKENTMKLLNI---ENVTIYPVSARS 539 (921)
Q Consensus 502 D~~~~----------------~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~ 539 (921)
|+... ..+.+.+.+++.+.+...... ....+++++|..
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~D 318 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATD 318 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecc
Confidence 97532 134667777787777766542 223345555543
No 426
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.52 E-value=0.0009 Score=70.98 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=101.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC--H-HHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS--G-KSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~--~-~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++...+.|++.+++=+=+.. . ..-.+..+++.+.+ +.++++.+ +++.+...||++|-++..-+.
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5567777777889988887652211 1 12233444444443 56777754 344466689999999987654
Q ss_pred HH-HHHHhcccCCCCccccCeEEEe---------------cCCHHHHHcccccCCCCEEEeCCCCCC--CCC--cc-hhh
Q 002437 171 AI-VARNTMKDSMSESVVLPLVGRN---------------VQTLDAAFNASSSEGADFLVCCFGEGQ--KAD--VI-ENS 229 (921)
Q Consensus 171 ~~-~~r~~~~~~~~~~~~~~~ig~S---------------~h~~~e~~~A~~~~gaDyv~~gpvTk~--~~g--~~-~~~ 229 (921)
.. ..+.+.... ++ .+ .++.. -+++.++.++....|+|.+++-++++. ..| ++ ..+
T Consensus 109 ~~~~l~ei~~~~-~~-~i--~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~ 184 (233)
T PRK00748 109 NPELVKEACKKF-PG-KI--VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRE 184 (233)
T ss_pred CHHHHHHHHHHh-CC-Cc--eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHH
Confidence 21 222211000 12 11 23332 345555544436779998887777432 223 33 478
Q ss_pred hhhcCCCCEEEEcCCC-ccChHHHHHcC-CcEEEEeecccc
Q 002437 230 LFTNVKIPIFIMNASP-LVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 230 ~~~~~~~Pv~aiGGi~-~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
+++.+++||++-|||. ++++.++.+.| ++||.+.+|.+.
T Consensus 185 l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 185 LAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 8888899999999995 68899999998 999988777654
No 427
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.52 E-value=0.0001 Score=73.39 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=58.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCC-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRAD-LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD-~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
++.||.+-| |=.- ..++ .-.| +-|||+|...+.....+- =-...+.-++|+||.|+.+.- .+++
T Consensus 98 Dll~iEs~G-NL~~------~~sp-~L~d~~~v~VidvteGe~~P~K~----gP~i~~aDllVInK~DLa~~v~~dle-- 163 (202)
T COG0378 98 DLLFIESVG-NLVC------PFSP-DLGDHLRVVVIDVTEGEDIPRKG----GPGIFKADLLVINKTDLAPYVGADLE-- 163 (202)
T ss_pred CEEEEecCc-ceec------ccCc-chhhceEEEEEECCCCCCCcccC----CCceeEeeEEEEehHHhHHHhCccHH--
Confidence 688899988 3110 1111 2234 889999988654211100 000112357899999998541 1222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
...++.++. . +..+|+++|++++ .|++++.+++...
T Consensus 164 --vm~~da~~~-n-p~~~ii~~n~ktg---------------------------~G~~~~~~~i~~~ 199 (202)
T COG0378 164 --VMARDAKEV-N-PEAPIIFTNLKTG---------------------------EGLDEWLRFIEPQ 199 (202)
T ss_pred --HHHHHHHHh-C-CCCCEEEEeCCCC---------------------------cCHHHHHHHHHhh
Confidence 223333332 2 4689999999998 6888887777653
No 428
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.49 E-value=0.0017 Score=71.47 Aligned_cols=143 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEec-----CcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCC
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIA-----ERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSM 182 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivn-----d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~ 182 (921)
++|+..+-. ...+.+++.+..+++++++.. |+-++.. +..+++.+.+++-|-++. ..|....+.+..
T Consensus 34 aGglG~l~~--~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~-g~p~~~i~~lk~--- 107 (307)
T TIGR03151 34 AGGLGIIGA--GNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA-GNPGKYIPRLKE--- 107 (307)
T ss_pred CCCcceecc--ccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC-CCcHHHHHHHHH---
Confidence 366777665 345677888888888887754 5555552 345667777887666543 345444444431
Q ss_pred CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC-CCCCCC----cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc
Q 002437 183 SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG-EGQKAD----VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS 255 (921)
Q Consensus 183 ~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~~g----~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~ 255 (921)
.. . .+-..|.+.+++.+| .+.|+|+|++-.. ..-|.| .. ..++++.+++||++.|||. ++++..++..
T Consensus 108 ~g-~---~v~~~v~s~~~a~~a-~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~ 182 (307)
T TIGR03151 108 NG-V---KVIPVVASVALAKRM-EKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFAL 182 (307)
T ss_pred cC-C---EEEEEcCCHHHHHHH-HHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHc
Confidence 12 1 334578999999999 8999999998333 222222 22 3677778899999999995 5669999999
Q ss_pred CCcEEEEe
Q 002437 256 GASGFVIS 263 (921)
Q Consensus 256 Ga~gva~~ 263 (921)
||+||.+.
T Consensus 183 GA~gV~iG 190 (307)
T TIGR03151 183 GAEAVQMG 190 (307)
T ss_pred CCCEeecc
Confidence 99999873
No 429
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.13 Score=60.59 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=65.5
Q ss_pred HHHhhhhhHHHHH---HHHHHHHHHHHHHhh-c----hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HH
Q 002437 807 LTSVLPTTLEDLL---ALGLCSAGGYIAVAN-F----PARRQRVIEKVNKIADGLA----REIEEAMQKDLQETV---GH 871 (921)
Q Consensus 807 ~~~i~~~~~~~~~---g~~~~~~~~~~~l~~-~----~~~~~~~~~k~r~~~~~~~----~~~~~~l~~q~~~~~---~~ 871 (921)
++.++-++.|..+ +...+++..|..+.. . +..+.+...+..+.++++. .+-....+.++..-+ .+
T Consensus 615 ggvi~K~vgwr~l~~l~a~y~~ly~~erl~w~i~dkeralk~q~~~~~~kkLq~~~~~h~a~cs~qi~~El~~vfa~l~r 694 (749)
T KOG0448|consen 615 GGVILKPVGWRSLSALLAPYGGLYLYERLTWTIHDKERALKVQFVNHLKKKLQEFDDSHTANCSHQIRQELRTVFAILCR 694 (749)
T ss_pred cceEEEeechHHHHHhhhHHHHHHhhhhceeeecCchhhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3445555666544 444455555555432 1 2223333344444444432 222445555544433 44
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002437 872 LENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQ 916 (921)
Q Consensus 872 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~ 916 (921)
+..+.++.+..=...++.+++.++..|..+.-++++...+.++..
T Consensus 695 ~v~~~~~~~~d~~~~~~~~le~lds~q~~~K~~~~ka~~l~~el~ 739 (749)
T KOG0448|consen 695 TVDRVEEQMRDDLLATKKQLESLDSIQSRLKFFRSKALKLEYELI 739 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677778888999999999999999999998888765
No 430
>PRK00098 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00023 Score=78.28 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=49.5
Q ss_pred cCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 460 VPRADLVLFVISADRPLTESE--VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.++|.+++|+|+.++..... ..++..+...+.|+++|+||+|+..+.+........ ... ...+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~----~~~----~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLAL----YRA----IGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHH----HHH----CCCeEEEEeC
Confidence 489999999999976643222 346666777889999999999997443222222221 111 2368999999
Q ss_pred cch
Q 002437 538 RST 540 (921)
Q Consensus 538 ~~~ 540 (921)
+++
T Consensus 150 ~~g 152 (298)
T PRK00098 150 KEG 152 (298)
T ss_pred CCC
Confidence 876
No 431
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.48 E-value=0.0014 Score=69.71 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=104.7
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC----CCCCHHHHH-----------------HHHHHHHHHhhcCceEE
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG----GEASGKSVY-----------------EAACLLKSVVKDRALFL 146 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~----k~~~~~~~~-----------------~~a~~l~~~~~~~~~~i 146 (921)
.|+..... +.+.+.+.+....++|++++++-- |-+|..... +..+.+++.+ ..+++
T Consensus 4 ~y~~~G~P-~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~ 80 (242)
T cd04724 4 PYITAGDP-DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIV 80 (242)
T ss_pred EEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEE
Confidence 45555532 234678888888899999999983 333433332 2233333222 34555
Q ss_pred e----cC--------cHHHHHhCCCCeEEcCCCCCCHHHHHHhccc---CCCCccccCeEEEecCCH-HHHHcccccCCC
Q 002437 147 I----AE--------RVDIAAAVNASGVLLSDQGLPAIVARNTMKD---SMSESVVLPLVGRNVQTL-DAAFNASSSEGA 210 (921)
Q Consensus 147 v----nd--------~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~---~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ga 210 (921)
+ |. .++.+.+.|++|+-+. |+|.....++... .+.+ ..+.++.++. +.++.. .+...
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~----~i~~i~P~T~~~~i~~i-~~~~~ 153 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLD----LIFLVAPTTPDERIKKI-AELAS 153 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCc----EEEEeCCCCCHHHHHHH-HhhCC
Confidence 4 42 3677888999999996 4454443322200 0022 1455677764 445544 33244
Q ss_pred CEE---EeCCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 211 DFL---VCCFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 211 Dyv---~~gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
||+ .+.|+|.. ..... .+.+++..++|++.=|||+ ++++..+.++ |+|+.+-++.++..
T Consensus 154 ~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 154 GFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred CCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 443 34676432 22222 4677777899999999999 5599999999 99999888777654
No 432
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.44 E-value=0.29 Score=60.57 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=46.1
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCC---CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGV---VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~---~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
+|.-|+|||||+|.|.|..+...+. .-||..+........ . ..-..+.++|+-|.+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~-----------~----------~~~~~~~v~d~eg~d 59 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEV-----------E----------SSESNILVLDVEGTD 59 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhcccc-----------c----------cCCCceEEEeCCCCC
Confidence 5899999999999999998765443 335543221111100 0 000258899999997
Q ss_pred hhhh----HHH-HHHHHhcCCCCEEEEEE
Q 002437 447 VILQ----RQQ-RLTEEFVPRADLVLFVI 470 (921)
Q Consensus 447 ~~~~----~~~-~~~~~~l~~aD~il~V~ 470 (921)
+... .++ +...=.+.-+|++|+=+
T Consensus 60 ~~er~~~~~fe~~~alf~la~s~~~iiN~ 88 (742)
T PF05879_consen 60 GRERGEDQDFERKSALFALAVSDVLIINM 88 (742)
T ss_pred chhhccccchHHHHHHHHHHhhhheeeeh
Confidence 6521 111 12222335678777655
No 433
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.44 E-value=0.0014 Score=65.99 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=41.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++++||||........-.....+. ...|.+++|+|+..+ ....+......+.....-+|+||.|....
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEECCcCCCC
Confidence 5899999998533222222222222 348999999998643 33334444443222246678899998765
No 434
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.43 E-value=0.00011 Score=80.15 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=33.5
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT 398 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT 398 (921)
+....+++|+|.||+||||+||+|..++..+.|..|+-
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv 286 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV 286 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc
Confidence 45678999999999999999999999999888887743
No 435
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.42 E-value=0.001 Score=75.11 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIEN 529 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (921)
+.+..++..+...+|+|++|+|+.+....-..++.+.+ ..+|+++|+||+|+.+.....+.+.+++++.++. .+...
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~-~g~~~ 127 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE-LGLKP 127 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 45677788888999999999998765432222232222 2679999999999986533334445554444433 23222
Q ss_pred CeEEEecccch
Q 002437 530 VTIYPVSARST 540 (921)
Q Consensus 530 ~~v~~vSA~~~ 540 (921)
..++++||+.+
T Consensus 128 ~~i~~vSAk~g 138 (360)
T TIGR03597 128 VDIILVSAKKG 138 (360)
T ss_pred CcEEEecCCCC
Confidence 35999999887
No 436
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.40 E-value=7.3e-05 Score=80.78 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
..+.|+|+|.||+||||+||+|...+++.+.+.|
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp 339 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP 339 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCC
Confidence 4689999999999999999999999988766554
No 437
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.40 E-value=0.0037 Score=66.92 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=109.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
-.|+..... +.+..++.+....++|++++-|=-|-.+ .. ...+.++++++ +. ..+
T Consensus 15 i~yi~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~--~~~~~p 91 (258)
T PRK13111 15 IPYITAGDP-DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE--KDPTIP 91 (258)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCC
Confidence 556666542 2346778888888999999988665432 21 22333333331 22 445
Q ss_pred EEe----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc---CCCCccccCeEEEecCCH-HHHHcccccC
Q 002437 145 FLI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTMKD---SMSESVVLPLVGRNVQTL-DAAFNASSSE 208 (921)
Q Consensus 145 ~iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~---~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ 208 (921)
+++ | ...+.|.+.|+||++++ |||..+++..... .+-+ .+.-++.++. +.++.. .+.
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~----~I~lvap~t~~eri~~i-~~~ 164 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLD----LIFLVAPTTTDERLKKI-ASH 164 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCc----EEEEeCCCCCHHHHHHH-HHh
Confidence 443 2 24677888999999996 7888777655410 0022 1344666663 445544 345
Q ss_pred CCCEEEe-C--CCCCC----CCCcc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 209 GADFLVC-C--FGEGQ----KADVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 209 gaDyv~~-g--pvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
.-+||-+ | ++|.. +..+. ...+++.+++||+.-+|| +++++.++.+. |+||.|.+|.++...+
T Consensus 165 s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 165 ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 5566533 2 23332 22232 477888889999999999 78999999985 9999999988877543
No 438
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.37 E-value=0.0007 Score=64.15 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=92.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..+|.++|....|||||+-...+..... .|...+... ..++. ..+ .+.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt-~~i~~----------------t~I----------sfS 72 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKT-VSIRG----------------TDI----------SFS 72 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeE-EEecc----------------eEE----------EEE
Confidence 3689999999999999999888875421 111111110 00100 001 378
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhhcCCe--EEEEEeCCCCCCC--hHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQWKKK--VVFVLNKSDLYQN--AFELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~~~~~--vivVlNK~D~~~~--~~~~~~v 513 (921)
+||..|. ++...+..-.|.++-+|+|++|-+++.+-.. +++.++.+.+++. -|+|.+|.|..-. .+..+++
T Consensus 73 IwdlgG~----~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I 148 (205)
T KOG1673|consen 73 IWDLGGQ----REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETI 148 (205)
T ss_pred EEecCCc----HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHH
Confidence 9999996 4555556667789999999999988766544 4577777776643 3578999997543 3445556
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
..+.+...+.. ..+.|++|+...+
T Consensus 149 ~~qar~YAk~m----nAsL~F~Sts~sI 172 (205)
T KOG1673|consen 149 SRQARKYAKVM----NASLFFCSTSHSI 172 (205)
T ss_pred HHHHHHHHHHh----CCcEEEeeccccc
Confidence 56555544433 4788999986653
No 439
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0016 Score=73.00 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++|+|++|+||||++..|.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 440
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=5.9e-05 Score=81.55 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCC--C---CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYL--K---DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~--~---~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..|+|+....+||||....++--.-. . ++...|..+ +-.. +.++........+..-|.. ..+.+
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtd-----fla~---erergitiqsaav~fdwkg---~rinl 106 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTD-----FLAI---ERERGITIQSAAVNFDWKG---HRINL 106 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHH-----HHHH---HHhcCceeeeeeeeccccc---ceEee
Confidence 47999999999999999887632110 0 111111111 1000 1112221111111111211 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|||||.-++.-+ +.+.++--|.++.|+|++.+...+.+.++++..+.+.|-++.+||+|.... ..+...+.+++
T Consensus 107 idtpghvdf~le----verclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a--nfe~avdsi~e 180 (753)
T KOG0464|consen 107 IDTPGHVDFRLE----VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA--NFENAVDSIEE 180 (753)
T ss_pred ecCCCcceEEEE----HHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh--hhhhHHHHHHH
Confidence 999997544322 344556679999999999888888888899999999999999999998754 33344444444
Q ss_pred H
Q 002437 520 N 520 (921)
Q Consensus 520 ~ 520 (921)
.
T Consensus 181 k 181 (753)
T KOG0464|consen 181 K 181 (753)
T ss_pred H
Confidence 3
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0012 Score=73.59 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-+......-.-...++ ...|.+++|+|+.... ..-.++++..+.. ..-=+++||.|-...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~-~idglI~TKLDET~k 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCC-CCCEEEEEcccCCCC
Confidence 7999999998643333222233333 3467889999886321 2224455555542 344578999998755
No 442
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00035 Score=77.57 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=77.3
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC---------
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--------- 430 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--------- 430 (921)
...+...+.|+.....|||||...|..+.-..++...... +|.++...+.+++......-+..+..
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~-----Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGET-----RFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCc-----cccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 3345567888889999999999999865322221111000 11111111112222211111111000
Q ss_pred ---CCc-ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 431 ---SPI-LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 431 ---~~~-l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
... ..-++|||+||.-++..+ ....++-.|..++|+|+-++...+....|.+.-.....-++|+||+|.
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSE----VTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSE----VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhh----hhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 000 001799999998555433 556678899999999998887666666777665545555678999995
No 443
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.35 E-value=0.0011 Score=76.21 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=41.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||........-+-...+ +..+|.+++|+|+... ....+..+.....-...-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVGIGGIIITKLDGTAK 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHhcCCCCEEEEecccCCCc
Confidence 799999999764433322212222 3468999999998764 23333333333222334678999997644
No 444
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.34 E-value=0.0012 Score=70.93 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=53.5
Q ss_pred cccEEEeCCCCChhhhHHHHHH-HHhc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLT-EEFV-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~-~~~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+-++|||..|.. .+-..+ .-.. .-.|...+++-++-+.....++.|........|+++|++|+|..+. +-+++
T Consensus 219 KviTFIDLAGHE----kYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA-NiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHE----KYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA-NILQE 293 (641)
T ss_pred eeEEEEeccchh----hhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH-HHHHH
Confidence 348999999952 221111 1111 4578888888888766555556666666778999999999999854 44555
Q ss_pred HHHHHHHHH
Q 002437 513 AISFVKENT 521 (921)
Q Consensus 513 v~~~~~~~~ 521 (921)
..+.+...+
T Consensus 294 tmKll~rll 302 (641)
T KOG0463|consen 294 TMKLLTRLL 302 (641)
T ss_pred HHHHHHHHh
Confidence 555554443
No 445
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.00064 Score=69.65 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=42.3
Q ss_pred ccEEEeC-CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCC
Q 002437 436 EMIIVDT-PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDT-PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~ 504 (921)
+++++|| .|+ + ..-+.....+|.+|.|+|.+...-..-.++-+...+.+ +++++|+||+|..
T Consensus 135 e~VivDtEAGi----E---HfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGI----E---HFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccch----h---hhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 5899999 454 2 23455678899999999987433222233333334567 8999999999954
No 446
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.30 E-value=0.0019 Score=72.34 Aligned_cols=147 Identities=19% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc--hh----------hcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE--EQ----------QRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~--~~----------~~~~~~~~g~~~~~~p 430 (921)
..+..++.|.-|||||||+|.|+... .+. ...+..-.++..+.. .. .......+|++-|...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~---~~~---~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~ 76 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNA---AGR---RIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVA 76 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc---CCC---cEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCc
Confidence 44678899999999999999998532 110 000111111111100 00 0122334555444322
Q ss_pred CCc------------ccccEEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHH----------------
Q 002437 431 SPI------------LKEMIIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTES---------------- 479 (921)
Q Consensus 431 ~~~------------l~~l~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~---------------- 479 (921)
..+ -.+.++|.|.|+..+.+-........+ -..|.||.|+|+.+.....
T Consensus 77 ~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 77 DDFIPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 111 125789999999654332222211111 2568899999997432100
Q ss_pred --------HHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 480 --------EVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 480 --------e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
...+..++. .--++|+||+|+.. +++++.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~-~~~l~~~~~~l~~ 200 (341)
T TIGR02475 157 NLDHETPLEELFEDQLA---CADLVILNKADLLD-AAGLARVRAEIAA 200 (341)
T ss_pred cccccchHHHHHHHHHH---hCCEEEEeccccCC-HHHHHHHHHHHHH
Confidence 001123332 33578999999985 4555555555543
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0032 Score=76.29 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=40.4
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC--CeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWK--KKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~--~~vivVlNK~D~~~~ 506 (921)
++++||||||.........+....+. ...+-+++|+|+... ..++ ++++..+... ..-=+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCCC
Confidence 36999999996533333323233322 345678999998732 3333 2444433321 234578999998755
No 448
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.0044 Score=71.40 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=41.8
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||..............++. ..+-+++|+++... ...-.+++......+ .--+++||+|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f~~~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHFSRLP-LDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHhCCCC-CCEEEEeccccccc
Confidence 379999999986544433333444443 33467788888632 122234455554433 23578999998654
No 449
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.28 E-value=0.0032 Score=67.67 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=101.1
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+.....-......+..+++. +.++++.. +++-+...||++|-+|..-+. +
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNP 110 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhCh
Confidence 667888888889999988866433321222233344455555 67888754 233344579999999865432 1
Q ss_pred ---HHHHHhcccCCCCccccCeEEEec-----------------------CCH-HHHHcccccCCCCEEEeCCCCC----
Q 002437 172 ---IVARNTMKDSMSESVVLPLVGRNV-----------------------QTL-DAAFNASSSEGADFLVCCFGEG---- 220 (921)
Q Consensus 172 ---~~~r~~~~~~~~~~~~~~~ig~S~-----------------------h~~-~e~~~A~~~~gaDyv~~gpvTk---- 220 (921)
.......| ++ ++ .++..+ -+. +-+... .+.|+|.+.+..+++
T Consensus 111 ~~~~~~~~~~~---~~-~i--v~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l-~~~G~~~iivt~i~~~g~~ 183 (254)
T TIGR00735 111 ELIYELADRFG---SQ-CI--VVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV-EKLGAGEILLTSMDKDGTK 183 (254)
T ss_pred HHHHHHHHHcC---CC-CE--EEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH-HHcCCCEEEEeCcCcccCC
Confidence 12222233 23 32 234432 122 334555 678999999987733
Q ss_pred CCCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcC-CcEEEEeecc
Q 002437 221 QKADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSG-ASGFVISLED 266 (921)
Q Consensus 221 ~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~G-a~gva~~~a~ 266 (921)
+.+.+. ...+++.+++||+|-|||. ++++.++.+.| ++||.+..+.
T Consensus 184 ~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 184 SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 333344 4778888899999999995 67899999988 9999765553
No 450
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.27 E-value=0.0024 Score=70.50 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------chhhcccccCCCeEEeecCCCc----
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------EEQQRCERHPDGQYICYLPSPI---- 433 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~p~~~---- 433 (921)
++.++.|.=|||||||+|.|+...-. ... .+.+-++++.+. ..........+|++-|+....+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g---~ki---AVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~ 75 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDG---KKI---AVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPAL 75 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCC---CcE---EEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHH
Confidence 56778999999999999999865420 000 000111111100 0111233455677666532111
Q ss_pred --------ccccEEEeCCCCChhhhHHHHHHH-Hhc---CCCCEEEEEEeCCCCCCHHH---HHHHHHhhhcCCeEEEEE
Q 002437 434 --------LKEMIIVDTPGTNVILQRQQRLTE-EFV---PRADLVLFVISADRPLTESE---VVFLRYTQQWKKKVVFVL 498 (921)
Q Consensus 434 --------l~~l~lvDTPG~~~~~~~~~~~~~-~~l---~~aD~il~V~da~~~~t~~e---~~~l~~l~~~~~~vivVl 498 (921)
-.+..+|.|-|+..+.+-...... ..+ -.-|.+|-|+|+.+...... ..+..++. .-=++|+
T Consensus 76 ~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivl 152 (323)
T COG0523 76 ERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVL 152 (323)
T ss_pred HHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEE
Confidence 135789999999765443333322 112 34578999999986543222 11223333 3457899
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 499 NKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 499 NK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
||.|+..++ +++.....++ ++ + +..+|+..|...
T Consensus 153 NK~Dlv~~~-~l~~l~~~l~----~l-n-p~A~i~~~~~~~ 186 (323)
T COG0523 153 NKTDLVDAE-ELEALEARLR----KL-N-PRARIIETSYGD 186 (323)
T ss_pred ecccCCCHH-HHHHHHHHHH----Hh-C-CCCeEEEccccC
Confidence 999999663 3444433333 32 2 346788777643
No 451
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.26 E-value=0.00057 Score=72.67 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....+.+.|+|.||+|||||||++...
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHH
Confidence 456789999999999999999998643
No 452
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.20 E-value=0.0038 Score=67.23 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+......-.....+..+|+. +.++++-+.+ .-+...|+++|-+|..-+. .
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 667888888899998888866333211111123334444444 5677775422 2234568999999875433 1
Q ss_pred HHHHHh---cccCCCCccccCeEEEe--------------------cCCHHH-HHcccccCCCCEEEeCCCCC----CCC
Q 002437 172 IVARNT---MKDSMSESVVLPLVGRN--------------------VQTLDA-AFNASSSEGADFLVCCFGEG----QKA 223 (921)
Q Consensus 172 ~~~r~~---~~~~~~~~~~~~~ig~S--------------------~h~~~e-~~~A~~~~gaDyv~~gpvTk----~~~ 223 (921)
...+.+ ++ ++ ++ .++.. --++.+ +.++ .+.|++.+++-.++. ..+
T Consensus 111 ~~~~~~~~~~~---~~-~i--~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~-~~~g~~~ii~~~i~~~G~~~G~ 183 (258)
T PRK01033 111 DLITEAAERFG---SQ-SV--VVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEY-EALGAGEILLNSIDRDGTMKGY 183 (258)
T ss_pred HHHHHHHHHhC---CC-cE--EEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHH-HHcCCCEEEEEccCCCCCcCCC
Confidence 122222 22 22 21 12222 123444 4555 789999999987743 233
Q ss_pred Ccc-hhhhhhcCCCCEEEEcCCC-ccChHHHH-HcCCcEEEEeecc
Q 002437 224 DVI-ENSLFTNVKIPIFIMNASP-LVDVSKFL-KSGASGFVISLED 266 (921)
Q Consensus 224 g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~-~~Ga~gva~~~a~ 266 (921)
.++ ...+++.+++||+|-|||. ++++.++. ..|++||++.+|-
T Consensus 184 d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 184 DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence 343 4778888999999999996 68999998 7999999765544
No 453
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.17 E-value=0.0035 Score=66.32 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=97.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHH---HHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKS---VYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~---~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++..-+.|++.+++=+-+..... -.+..+++.+.| ..++++.+ .++-+...||++|-++..-+.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4567777766888877777443332111 123444444444 45677754 333556689999998854432
Q ss_pred ----HHHHHHhcccCCCCccccCeEEEe-------cC--------CH-HHHHcccccCCCCEEEeCCCCCC----CCCcc
Q 002437 171 ----AIVARNTMKDSMSESVVLPLVGRN-------VQ--------TL-DAAFNASSSEGADFLVCCFGEGQ----KADVI 226 (921)
Q Consensus 171 ----~~~~r~~~~~~~~~~~~~~~ig~S-------~h--------~~-~e~~~A~~~~gaDyv~~gpvTk~----~~g~~ 226 (921)
...+-..+| ++ ++ +++.. +| ++ +-++.. .+.|+|.+++..++.. .+.+.
T Consensus 107 d~~~~~~~~~~~g---~~-~i--~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~g~~~ii~~~~~~~g~~~g~~~~ 179 (230)
T TIGR00007 107 NPDLVKELLKEYG---PE-RI--VVSLDARGGEVAVKGWLEKSEVSLEELAKRL-EELGLEGIIYTDISRDGTLSGPNFE 179 (230)
T ss_pred CHHHHHHHHHHhC---CC-cE--EEEEEEECCEEEEcCCcccCCCCHHHHHHHH-HhCCCCEEEEEeecCCCCcCCCCHH
Confidence 112222222 23 22 22211 12 33 334455 6889999998777322 23333
Q ss_pred -hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++..++||++-|||. ++++..+..+||+||.+-++.+..
T Consensus 180 ~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 180 LTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4777888899999999995 678999999999999887766543
No 454
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.16 E-value=0.00043 Score=70.18 Aligned_cols=79 Identities=23% Similarity=0.210 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhH--HHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNVILQR--QQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+..||.+.|...+.+- ....... .-..+.++.|+|+.+...... .-+..++. .-=++|+||+|+.+.+..++
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~~~~~~i~ 161 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLVSDEQKIE 161 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGHHHH--HH
T ss_pred CEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccCChhhHHH
Confidence 6899999998654332 1111111 235689999999965311111 11233333 33478999999985432234
Q ss_pred HHHHHHH
Q 002437 512 EAISFVK 518 (921)
Q Consensus 512 ~v~~~~~ 518 (921)
.+.+.++
T Consensus 162 ~~~~~ir 168 (178)
T PF02492_consen 162 RVREMIR 168 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 455
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0085 Score=68.39 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=39.3
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.++++|||+|.........+....+. ...+-+++|+|+... ..+. +++...... ..-=+++||.|-...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~-~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH-GIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeeeCCCC
Confidence 36899999998643333323333332 234567888888743 2322 233333322 334568999998765
No 456
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0032 Score=70.05 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=39.7
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||.+......-.....+. ...|.+++|+++. ....+. +++..... -..--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~-l~i~glI~TKLDET~~ 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE-IPIDGFIITKMDETTR 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc-CCCCEEEEEcccCCCC
Confidence 37899999998543333323333333 2457778888764 233332 33333222 2344678999998754
No 457
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.08 E-value=0.0044 Score=60.05 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=50.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++++|||+..+ ......+..+|.+++|++.+......-..+++.+.+ ...++.+|+|+++.. .+.++.
T Consensus 46 d~VIiD~p~~~~------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~---~~~~~~ 116 (139)
T cd02038 46 DYIIIDTGAGIS------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP---KEGKKV 116 (139)
T ss_pred CEEEEECCCCCC------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH---HHHHHH
Confidence 699999998531 123466788999999999875433333455666543 245788999999743 333444
Q ss_pred HHHHHHHHHHh
Q 002437 514 ISFVKENTMKL 524 (921)
Q Consensus 514 ~~~~~~~~~~~ 524 (921)
.+.+.+-+.+.
T Consensus 117 ~~~~~~~~~r~ 127 (139)
T cd02038 117 FKRLSNVSNRF 127 (139)
T ss_pred HHHHHHHHHHH
Confidence 45554444443
No 458
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.08 E-value=0.00085 Score=70.61 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=76.7
Q ss_pred HHHHHhCCCCeEEcCCC--CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC--
Q 002437 151 VDIAAAVNASGVLLSDQ--GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK-- 222 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~-- 222 (921)
++.+..+|+|||=++.. .++..+.+......+..+. ..| ..+|+.+++..+ ...|.|||.+.|+ |...
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl--~~I-~~v~~~~~~~~~-~~~~~~~I~~~p~~~igt~~~~~ 153 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGL--ESV-VCVNNPETSAAA-AALGPDYVAVEPPELIGTGIPVS 153 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCC--eEE-EEcCCHHHHHHH-hcCCCCEEEEeCccccccCCCCC
Confidence 56667789999988864 3444333322210000111 123 588999999988 7899999999995 3211
Q ss_pred ----CCcc--hhhhhhc-CCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 223 ----ADVI--ENSLFTN-VKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 223 ----~g~~--~~~~~~~-~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++. ...+++. .++||++.||| +++++..+.+.|++||.+.+|.++.
T Consensus 154 ~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 154 KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 1111 1334443 36999999999 5667888899999999999999875
No 459
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.08 E-value=0.0013 Score=72.04 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=49.9
Q ss_pred hcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEec
Q 002437 459 FVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536 (921)
Q Consensus 459 ~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vS 536 (921)
.+.++|.+++|+|+.++. +.... .++..+...+.|+++|+||+|+....+. .. . ...... ...+++++|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~-~~---~-~~~~~~----~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEE-EL---E-LVEALA----LGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHH-HH---H-HHHHHh----CCCeEEEEE
Confidence 468999999999998876 44433 3566666778999999999999754211 11 1 111111 246899999
Q ss_pred ccch
Q 002437 537 ARST 540 (921)
Q Consensus 537 A~~~ 540 (921)
|+.+
T Consensus 146 A~~g 149 (287)
T cd01854 146 AKTG 149 (287)
T ss_pred CCCC
Confidence 9886
No 460
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.07 E-value=0.0035 Score=81.38 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEc
Q 002437 327 IETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF 406 (921)
Q Consensus 327 ~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~ 406 (921)
++..+..+.+.+..+++.... ....+-..|=.+|+|++|+||||+|+.. |.++ |............ .
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~---------~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~--~ 149 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLG---------GRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRG--V 149 (1169)
T ss_pred HHHHHHHHHHHHHHHhhcccc---------CchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccC--C
Confidence 344445566666666654311 0112234566789999999999999987 5443 2111000000000 0
Q ss_pred cCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh----hHHHHHHHHhc---------CCCCEEEEEEeCC
Q 002437 407 SDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL----QRQQRLTEEFV---------PRADLVLFVISAD 473 (921)
Q Consensus 407 ~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~----~~~~~~~~~~l---------~~aD~il~V~da~ 473 (921)
+.+ .. | ..=+-.+-++|||+|-.... +.....+..++ +-.|.||+++|++
T Consensus 150 ~~t------------~~---c--~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~ 212 (1169)
T TIGR03348 150 GGT------------RN---C--DWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA 212 (1169)
T ss_pred CCC------------cc---c--ceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH
Confidence 000 00 0 00011357899999964221 12222333333 3479999999998
Q ss_pred CCCC--HHHHH--------HHHHhh---hcCCeEEEEEeCCCCCC
Q 002437 474 RPLT--ESEVV--------FLRYTQ---QWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 474 ~~~t--~~e~~--------~l~~l~---~~~~~vivVlNK~D~~~ 505 (921)
.-.+ ..+.. -|..+. ....||.+|+||+|++.
T Consensus 213 ~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 213 DLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 6543 23221 122232 24579999999999883
No 461
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.06 E-value=0.023 Score=60.26 Aligned_cols=152 Identities=25% Similarity=0.255 Sum_probs=93.2
Q ss_pred hcCCcEEEEeCC-------CCCHH---HHHHHHHHHHHHhh-c-CceEEecCcH---HHHHhCCCC--------eEEcCC
Q 002437 110 AKFVGIVVLNGG-------EASGK---SVYEAACLLKSVVK-D-RALFLIAERV---DIAAAVNAS--------GVLLSD 166 (921)
Q Consensus 110 ~~g~~~vqlR~k-------~~~~~---~~~~~a~~l~~~~~-~-~~~~ivnd~~---dla~~~~a~--------GvHL~~ 166 (921)
++|++.|.+-.- ..+.. .+...+.+++..+. . |+-++-||.. ++|.++||+ |+|++.
T Consensus 39 ~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d 118 (257)
T TIGR00259 39 EGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASD 118 (257)
T ss_pred hCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecc
Confidence 789999988441 22222 23334445555553 3 7778888854 678888876 788888
Q ss_pred CCCCH------HHHHHhcccCCCCccccC--eE----EEecCCHHHHHcccccCC-CCEEEeCCC-CCCCCCcc-hhhhh
Q 002437 167 QGLPA------IVARNTMKDSMSESVVLP--LV----GRNVQTLDAAFNASSSEG-ADFLVCCFG-EGQKADVI-ENSLF 231 (921)
Q Consensus 167 ~~l~~------~~~r~~~~~~~~~~~~~~--~i----g~S~h~~~e~~~A~~~~g-aDyv~~gpv-Tk~~~g~~-~~~~~ 231 (921)
+.+.. ..-|+.++ .+-+++. .+ -.+-.+++|..+.+...| ||-++++=. |....... ...++
T Consensus 119 ~G~~~~~a~e~~r~r~~l~---~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr 195 (257)
T TIGR00259 119 QGIIEGNAGELIRYKKLLG---SEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAK 195 (257)
T ss_pred cccccccHHHHHHHHHHcC---CCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHH
Confidence 76542 22355544 2212110 00 012346666444214455 999999766 55444444 45554
Q ss_pred hc-CCCCEEEEcCCCccChHHHHHcCCcEEEEeec
Q 002437 232 TN-VKIPIFIMNASPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 232 ~~-~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a 265 (921)
+. .++||+.-||++++|+.++++. ++|+-|.+.
T Consensus 196 ~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~ 229 (257)
T TIGR00259 196 ETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATT 229 (257)
T ss_pred hccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCC
Confidence 43 3689999999999999999997 999965443
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=97.05 E-value=0.0071 Score=69.43 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=39.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-....+........+ .-..|-+++|+|+..+ ....+..+...+.-...-+|+||.|....
T Consensus 185 DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~~r 255 (433)
T PRK10867 185 DVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGDAR 255 (433)
T ss_pred CEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCccc
Confidence 689999999753322222211222 1356788999998632 33334444444322344678899996543
No 463
>PRK01889 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.0021 Score=72.45 Aligned_cols=72 Identities=29% Similarity=0.365 Sum_probs=51.0
Q ss_pred cCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 460 VPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
+.++|.+++|++++.++..... .+|..+...+.+.++|+||+|+.++. ++..+.+.. + ....+|+++|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~---~~~~~~~~~----~--~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA---EEKIAEVEA----L--APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH---HHHHHHHHH----h--CCCCcEEEEECC
Confidence 4788999999999876765444 46777777888889999999998542 122222222 2 234789999998
Q ss_pred ch
Q 002437 539 ST 540 (921)
Q Consensus 539 ~~ 540 (921)
.+
T Consensus 181 ~g 182 (356)
T PRK01889 181 DG 182 (356)
T ss_pred CC
Confidence 86
No 464
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.03 E-value=0.0032 Score=69.71 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc--c----hhhcccccCCCeEEeecCCCc---
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS--E----EQQRCERHPDGQYICYLPSPI--- 433 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~--~----~~~~~~~~~~g~~~~~~p~~~--- 433 (921)
..+..++.|.-|||||||||.|+.... +.. ..+..-+++..+. . .........+|++-|.....+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~---~~r---iaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~ 76 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQH---GYK---IAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDA 76 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccc---CCc---ccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHH
Confidence 457888999999999999999985421 100 0000001111100 0 001122345666555433211
Q ss_pred -------------ccccEEEeCCCCChhhhHHHHHHH-Hhc---CCCCEEEEEEeCCCCCCHHH-H-HHHHHhhhcCCeE
Q 002437 434 -------------LKEMIIVDTPGTNVILQRQQRLTE-EFV---PRADLVLFVISADRPLTESE-V-VFLRYTQQWKKKV 494 (921)
Q Consensus 434 -------------l~~l~lvDTPG~~~~~~~~~~~~~-~~l---~~aD~il~V~da~~~~t~~e-~-~~l~~l~~~~~~v 494 (921)
-.+.++|.|.|+..+.+-...... ..+ -..|.++.|+|+.+.....+ . .+..++. .--
T Consensus 77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD 153 (318)
T PRK11537 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YAD 153 (318)
T ss_pred HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCC
Confidence 135789999998644322222111 111 13588999999975322111 1 1223333 234
Q ss_pred EEEEeCCCCCCC
Q 002437 495 VFVLNKSDLYQN 506 (921)
Q Consensus 495 ivVlNK~D~~~~ 506 (921)
++|+||+|+...
T Consensus 154 ~IvlnK~Dl~~~ 165 (318)
T PRK11537 154 RILLTKTDVAGE 165 (318)
T ss_pred EEEEeccccCCH
Confidence 789999999853
No 465
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.99 E-value=0.0027 Score=66.31 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=97.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCC------CCCHHHHHHHHHHHHHH-hhc--CceEEecCcHHH---HHhCCCCe--EEcC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG------EASGKSVYEAACLLKSV-VKD--RALFLIAERVDI---AAAVNASG--VLLS 165 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k------~~~~~~~~~~a~~l~~~-~~~--~~~~ivnd~~dl---a~~~~a~G--vHL~ 165 (921)
.+-+.++++.++|++++|+--= +.+-. ....+.+++. +.- .+-|++.+.... ..+.|||= +|.-
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~E 90 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVE 90 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence 5667888888899999999762 22211 2245566665 332 677888765443 34567774 5664
Q ss_pred CCCCCHH---HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCC-------CCCcc-hhhhhhcC
Q 002437 166 DQGLPAI---VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQ-------KADVI-ENSLFTNV 234 (921)
Q Consensus 166 ~~~l~~~---~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~-------~~g~~-~~~~~~~~ 234 (921)
..+-+.. ..|.. | -. .-++.+.+++-+...- .-.-+|+|++=.|... +.+++ .+++++..
T Consensus 91 a~~~~~~~l~~ik~~-g---~k----~GlalnP~Tp~~~i~~-~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~ 161 (220)
T PRK08883 91 ASEHVDRTLQLIKEH-G---CQ----AGVVLNPATPLHHLEY-IMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMI 161 (220)
T ss_pred CcccHHHHHHHHHHc-C---Cc----EEEEeCCCCCHHHHHH-HHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHH
Confidence 3332222 23332 2 11 1356666665443332 3456899887444111 12333 34444433
Q ss_pred -----CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 235 -----KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 235 -----~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
++|+.+.|||+++|+.++.++||+++++.++.++
T Consensus 162 ~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 162 DESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred HhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 4999999999999999999999999999888764
No 466
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.96 E-value=0.04 Score=58.85 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCCCCC----hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccc
Q 002437 492 KKVVFVLNKSDLYQN----AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRI 567 (921)
Q Consensus 492 ~~vivVlNK~D~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 567 (921)
.|+++|++|+|.+.- .+-.++...+++..++++.-..+...|+.|.++.
T Consensus 223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~--------------------------- 275 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKET--------------------------- 275 (473)
T ss_pred CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccc---------------------------
Confidence 589999999998432 2334555566666666654334577899999874
Q ss_pred cchHHHHHHHHHhhcc
Q 002437 568 NTFDKLEKLLYSFLDG 583 (921)
Q Consensus 568 sg~~~L~~~l~~~l~~ 583 (921)
..++-|.++|...+-+
T Consensus 276 KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRSYG 291 (473)
T ss_pred cchHHHHHHHHHHhcC
Confidence 5677888888766543
No 467
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.91 E-value=0.88 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK 391 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~ 391 (921)
--+|+|+|+.++|||||+|.|.|.++..
T Consensus 37 YhVVavmG~QSSGKSTLLN~LFgTnF~~ 64 (772)
T KOG2203|consen 37 YHVVAVMGSQSSGKSTLLNHLFGTNFRE 64 (772)
T ss_pred eeEEEEecCcccchHHHHHHHhccChHH
Confidence 3589999999999999999999987654
No 468
>PRK13796 GTPase YqeH; Provisional
Probab=96.84 E-value=0.01 Score=67.22 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=48.8
Q ss_pred HHHhcCCCC-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 456 TEEFVPRAD-LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 456 ~~~~l~~aD-~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
+.+.+...| +|++|+|+.+.... -...+..+. .+.|+++|+||+|+.+.....+.+.+++....+ ..+.....++.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k-~~g~~~~~v~~ 138 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK-ELGLRPVDVVL 138 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHH-hcCCCcCcEEE
Confidence 455556566 99999998764422 222233322 267999999999997543223334344333322 22322236999
Q ss_pred ecccch
Q 002437 535 VSARST 540 (921)
Q Consensus 535 vSA~~~ 540 (921)
+||+.+
T Consensus 139 vSAk~g 144 (365)
T PRK13796 139 ISAQKG 144 (365)
T ss_pred EECCCC
Confidence 999886
No 469
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0024 Score=69.90 Aligned_cols=173 Identities=22% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC------------CCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG------------VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~------------~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
.+.+++|+|...+||||+-..++...-.... ....+.-.+.+ -+...++.........|...+..+
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~--ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWA--LDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEE--EcCchhhhhccceeeeeeEEEEec
Confidence 5679999999999999987776543211100 00111111111 111112222222222232222121
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC---------CHHHHHHHHHhhhcCCeEEEEEeCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL---------TESEVVFLRYTQQWKKKVVFVLNKS 501 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~---------t~~e~~~l~~l~~~~~~vivVlNK~ 501 (921)
. +.+++.|+||..+..+. +..-...||+-++|+++.... ...+..+|... ...+.+|+++||+
T Consensus 156 ~---~~ftiLDApGHk~fv~n----mI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKM 227 (501)
T KOG0459|consen 156 N---KRFTILDAPGHKSFVPN----MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKM 227 (501)
T ss_pred c---eeEEeeccCcccccchh----hccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEec
Confidence 1 46899999997544332 222346789999999885321 11111122211 1236799999999
Q ss_pred CCCCC---hHHHHHHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcc
Q 002437 502 DLYQN---AFELEEAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLS 546 (921)
Q Consensus 502 D~~~~---~~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~ 546 (921)
|...- .+..+++.+.+..-++ .++ ..+...+++|..+|.+.+..
T Consensus 228 ddPtvnWs~eRy~E~~~k~~~fLr-~~g~n~~~d~~f~p~sg~tG~~~k~~ 277 (501)
T KOG0459|consen 228 DDPTVNWSNERYEECKEKLQPFLR-KLGFNPKPDKHFVPVSGLTGANVKDR 277 (501)
T ss_pred cCCccCcchhhHHHHHHHHHHHHH-HhcccCCCCceeeecccccccchhhc
Confidence 96532 3345555555554444 223 24567889999998665543
No 470
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.80 E-value=0.0079 Score=64.51 Aligned_cols=172 Identities=11% Similarity=0.063 Sum_probs=103.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
--|+..... +.+..++.+....++|++++-|=-|-.| .. ..++.+++++ +. ..+
T Consensus 18 i~yi~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r---~~~~~p 93 (263)
T CHL00200 18 IPFITAGDP-DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVN---GEIKAP 93 (263)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCC
Confidence 456665542 2346778888888999999988665432 22 2222333332 22 445
Q ss_pred EEe----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhc---ccCCCCccccCeEEEecCCH-HHHHcccccC
Q 002437 145 FLI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTM---KDSMSESVVLPLVGRNVQTL-DAAFNASSSE 208 (921)
Q Consensus 145 ~iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~---~~~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ 208 (921)
+++ | +.++-|.++|+|||=+.+ +|..+.-+.. ...+-+ .+.-++.++. +.++.- ..
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD--LP~ee~~~~~~~~~~~gi~----~I~lv~PtT~~eri~~i--~~ 165 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD--LPYEESDYLISVCNLYNIE----LILLIAPTSSKSRIQKI--AR 165 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC--CCHHHHHHHHHHHHHcCCC----EEEEECCCCCHHHHHHH--HH
Confidence 444 2 256788889999999954 4544443221 000012 1445556654 444432 22
Q ss_pred CCC-EEEe-C-C-CCCCC----CCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 209 GAD-FLVC-C-F-GEGQK----ADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 209 gaD-yv~~-g-p-vTk~~----~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
-++ ||-+ | | +|... ..+. ...+++.+++|++.=+||+ ++++.++..+||+||.+-+|.++.+
T Consensus 166 ~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 166 AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 333 5543 3 2 24332 2222 3677778899999988998 9999999999999999988887764
No 471
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.80 E-value=0.01 Score=60.92 Aligned_cols=154 Identities=18% Similarity=0.089 Sum_probs=101.8
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHH-H
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAI-V 173 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~-~ 173 (921)
++..+.++.+.++|++.+-+--.+ ....+..+++++-+.. |+ .++=-+..+.|.+.||+=+-=+.-+-.+. .
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~ 96 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKH 96 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 477899999999999999885533 3344555556554432 22 23334567888888987664333222222 2
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCC-cc-hhhhhhcC-CCCEEEEcCCCccChH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKAD-VI-ENSLFTNV-KIPIFIMNASPLVDVS 250 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g-~~-~~~~~~~~-~~Pv~aiGGi~~~~~~ 250 (921)
++. . + ++.+-| |-++.|+..| .+.|+|++=+=|.. ..| .. .+.+..-. ++|.++.|||+++|+.
T Consensus 97 ~~~-~-----~--i~~iPG--~~TptEi~~A-~~~Ga~~vKlFPA~--~~GG~~yikal~~plp~i~~~ptGGV~~~N~~ 163 (204)
T TIGR01182 97 AQD-H-----G--IPIIPG--VATPSEIMLA-LELGITALKLFPAE--VSGGVKMLKALAGPFPQVRFCPTGGINLANVR 163 (204)
T ss_pred HHH-c-----C--CcEECC--CCCHHHHHHH-HHCCCCEEEECCch--hcCCHHHHHHHhccCCCCcEEecCCCCHHHHH
Confidence 222 1 1 111223 5699999999 89999999887751 122 33 34444433 6899999999999999
Q ss_pred HHHHcCCcEEEEeecccc
Q 002437 251 KFLKSGASGFVISLEDLS 268 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~ 268 (921)
+-+++|+.++++.+...+
T Consensus 164 ~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 164 DYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HHHhCCCEEEEEChhhcC
Confidence 999999999987666654
No 472
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.79 E-value=0.0071 Score=69.40 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=39.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||.....+........+ .-..|-+++|+|+..+ ....+........-...=+|+||.|....
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGDAR 254 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCccc
Confidence 689999999743322221111111 2357889999998632 33333444433322344578999996543
No 473
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.77 E-value=0.012 Score=63.04 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----H-----------------HHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----G-----------------KSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~-----------------~~~~~~a~~l~~~~~~~~~~ 145 (921)
-.|+..... +.+...+.+....++|++++-|=-|-.+ . ...++.++++++-.. ..++
T Consensus 13 i~y~~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~pl 90 (256)
T TIGR00262 13 IPFVTAGDP-TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NIPI 90 (256)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCE
Confidence 456665532 2346678888888999999998665332 1 233333344332201 2332
Q ss_pred Ee----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhc---ccCCCCccccCeEEEecCC-HHHHHcc-cccC
Q 002437 146 LI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTM---KDSMSESVVLPLVGRNVQT-LDAAFNA-SSSE 208 (921)
Q Consensus 146 iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~---~~~~~~~~~~~~ig~S~h~-~~e~~~A-~~~~ 208 (921)
++ | ..++-+.+.|+||+=+. |+|....-... ...+.+ .++-++.++ .+.+..- ....
T Consensus 91 v~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~----~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 91 GLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVK----PIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred EEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCc----EEEEECCCCCHHHHHHHHHhCC
Confidence 22 2 24667888999998886 45543332211 000022 134555555 4443321 0345
Q ss_pred CCCEEEe-CCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 209 GADFLVC-CFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 209 gaDyv~~-gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|..|++- ..+|.. ++.+. .+.+++..+.||++=|||+ ++++.++.++||+||++-+|.++.+
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 5666532 223432 22332 4777777889999999997 9999999999999999888876643
No 474
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.75 E-value=0.016 Score=63.85 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=57.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC---C--------HHHHHHHHHhhhc----CCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL---T--------ESEVVFLRYTQQW----KKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~---t--------~~e~~~l~~l~~~----~~~vivVlNK 500 (921)
.+.++|.+|+- .+... +......+++||||++.+.-. . .+.+.+++.+..+ ..++|+.+||
T Consensus 196 ~f~~~DvGGQR---seRrK-WihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 196 KFRMFDVGGQR---SERKK-WIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred ceEEEeCCCcH---HHhhh-HHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 47899999973 22233 444779999999999876321 1 1223455666542 3689999999
Q ss_pred CCCCCC----------------hHHHHHHHHHHHHHHHHhhCCC
Q 002437 501 SDLYQN----------------AFELEEAISFVKENTMKLLNIE 528 (921)
Q Consensus 501 ~D~~~~----------------~~~~~~v~~~~~~~~~~~~~~~ 528 (921)
.|+... ....+++..++...+.++....
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~ 315 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNK 315 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhccc
Confidence 998743 1234556666666666665543
No 475
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.74 E-value=0.0012 Score=67.87 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
-+|.++|-|++||||++.-|.|......+...||..... |.+...- ..+.+.|.||
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vp-------------------G~~~y~g-----aKiqlldlpg 115 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVP-------------------GVIRYKG-----AKIQLLDLPG 115 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEec-------------------ceEeccc-----cceeeecCcc
Confidence 389999999999999999999986554555555532111 1110000 1489999999
Q ss_pred CChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCCCH
Q 002437 445 TNVILQR---QQRLTEEFVPRADLVLFVISADRPLTE 478 (921)
Q Consensus 445 ~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~t~ 478 (921)
+-..... .........+.|++|++|+|+-.|++.
T Consensus 116 iiegakdgkgrg~qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 116 IIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred hhcccccCCCCccEEEEEeecccEEEEEeeccCcccH
Confidence 8422111 112233445889999999999988753
No 476
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.74 E-value=0.0078 Score=61.37 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
.++..+.+++++++|++.+-+--.+-+ ..+..+.+++-+.. |+ .++=-+..+.|.+.||+=+--+. +....
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~---a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~--~~~~v 93 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPN---ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG--FDPEV 93 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTT---HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS----HHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCcc---HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC--CCHHH
Confidence 347789999999999999888665433 34445555555543 32 33334678888889987554443 23333
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCC-cc-hhhhhhcC-CCCEEEEcCCCccChH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKAD-VI-ENSLFTNV-KIPIFIMNASPLVDVS 250 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g-~~-~~~~~~~~-~~Pv~aiGGi~~~~~~ 250 (921)
.+.... .+ ++.+=|+ -++.|+..| .+.|+|++=+=|. ...| +. .+.+..-. ++|.++.|||+++|+.
T Consensus 94 ~~~~~~---~~--i~~iPG~--~TptEi~~A-~~~G~~~vK~FPA--~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~ 163 (196)
T PF01081_consen 94 IEYARE---YG--IPYIPGV--MTPTEIMQA-LEAGADIVKLFPA--GALGGPSYIKALRGPFPDLPFMPTGGVNPDNLA 163 (196)
T ss_dssp HHHHHH---HT--SEEEEEE--SSHHHHHHH-HHTT-SEEEETTT--TTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHH
T ss_pred HHHHHH---cC--CcccCCc--CCHHHHHHH-HHCCCCEEEEecc--hhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHH
Confidence 332221 11 1113354 599999999 8999999988776 2223 43 45555433 5889999999999999
Q ss_pred HHHHcCCcEEEEeeccccc
Q 002437 251 KFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~~ 269 (921)
+-+++|+..+++-+...+.
T Consensus 164 ~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 164 EYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHTSTTBSEEEESGGGSH
T ss_pred HHHhCCCEEEEECchhcCH
Confidence 9999999999877766553
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.026 Score=65.56 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....++|+|++|+||||++..|.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3468999999999999999999864
No 478
>PRK12288 GTPase RsgA; Reviewed
Probab=96.71 E-value=0.014 Score=65.29 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred cCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 460 VPRADLVLFVISADRPLTESEVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
..++|.+++|++.+..++....+ ++..+...+.|+++|+||+|+.... +.+.+.... ..+.. ...+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~-~~~~~~~~~-~~y~~----~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE-GRAFVNEQL-DIYRN----IGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH-HHHHHHHHH-HHHHh----CCCeEEEEeCC
Confidence 46799999999987666655543 5555566778999999999998542 211221211 11111 24689999998
Q ss_pred chHHhhcccccccccCcccccccCccccccchHHHHHHHHH---hhccCCccchHHHHHhhc
Q 002437 539 STLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS---FLDGSSSTGKERMRLKLE 597 (921)
Q Consensus 539 ~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~---~l~~~~~~~~e~~~~kl~ 597 (921)
.+ .|+++|.+.+.. .+.+.+..+++.+-..|.
T Consensus 192 tg---------------------------~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 192 TG---------------------------EGLEELEAALTGRISIFVGQSGVGKSSLINALL 226 (347)
T ss_pred CC---------------------------cCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhc
Confidence 86 678888877754 344455555555444443
No 479
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0028 Score=71.66 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=39.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcC-----CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVP-----RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~-----~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||........-.....++. ...-+++|+|+.... ..-.++++.... -..-=+|+||.|-...
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~-~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYES-LNYRRILLTKLDEADF 374 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHhcC-CCCCEEEEEcccCCCC
Confidence 68999999985332222222333332 234678899987542 122233333322 2345578999998755
No 480
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.64 E-value=0.047 Score=57.92 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=98.3
Q ss_pred HHHhcCCcEEEEeC-------CCCCHH---HHHHHHHHHHHHhh-c-CceEEecCc---HHHHHhCCCC--------eEE
Q 002437 107 EAVAKFVGIVVLNG-------GEASGK---SVYEAACLLKSVVK-D-RALFLIAER---VDIAAAVNAS--------GVL 163 (921)
Q Consensus 107 ~~l~~g~~~vqlR~-------k~~~~~---~~~~~a~~l~~~~~-~-~~~~ivnd~---~dla~~~~a~--------GvH 163 (921)
...++|++.|++-. +..+.. .+...+.+++.... . |+.++-||- ..+|.++||| |.|
T Consensus 37 ~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~ 116 (254)
T PF03437_consen 37 ALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAY 116 (254)
T ss_pred HHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEcee
Confidence 33479999999866 222322 23334455544443 2 777888885 4567778876 778
Q ss_pred cCCCCCCH------HHHHHhcccCCCCccccCeEEE--------ecCCHHHHH-cccccCCCCEEEeCCC-CCCCCCcc-
Q 002437 164 LSDQGLPA------IVARNTMKDSMSESVVLPLVGR--------NVQTLDAAF-NASSSEGADFLVCCFG-EGQKADVI- 226 (921)
Q Consensus 164 L~~~~l~~------~~~r~~~~~~~~~~~~~~~ig~--------S~h~~~e~~-~A~~~~gaDyv~~gpv-Tk~~~g~~- 226 (921)
++...+.. ...|+.++ .+.++ +-.+ +.-++++.. .|....+||.++++-- |..++.++
T Consensus 117 ~~d~G~~~~~a~e~~r~R~~l~---a~v~i--laDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~ 191 (254)
T PF03437_consen 117 VTDEGIIEGCAGELLRYRKRLG---ADVKI--LADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEK 191 (254)
T ss_pred cccCccccccHHHHHHHHHHcC---CCeEE--EeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHH
Confidence 87776542 33355554 33221 1111 112455543 3214678999999765 66666665
Q ss_pred hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 227 ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
...+++.+++||+.-+|+|++|+.+.++. |+|+.|-+..
T Consensus 192 l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~ 230 (254)
T PF03437_consen 192 LKRVREAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGSYF 230 (254)
T ss_pred HHHHHhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEeeee
Confidence 57788888899999999999999999975 8999665543
No 481
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.55 E-value=0.02 Score=63.77 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred HHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe--c----CcHHHHHhCCCCeEEcCCCCC-C---HH---HH
Q 002437 108 AVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI--A----ERVDIAAAVNASGVLLSDQGL-P---AI---VA 174 (921)
Q Consensus 108 ~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv--n----d~~dla~~~~a~GvHL~~~~l-~---~~---~~ 174 (921)
+-.+|+.++. + ..+..++.+..++++... .+-..+ + ++.+.+.+.|++.+++....- + .. ..
T Consensus 55 a~~GglGvi~-~--~~~~~~~~~~i~~vk~~l--~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~i 129 (325)
T cd00381 55 ARLGGIGVIH-R--NMSIEEQAEEVRKVKGRL--LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFI 129 (325)
T ss_pred HHCCCEEEEe-C--CCCHHHHHHHHHHhccCc--eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHH
Confidence 3457778776 3 355555555555554211 222222 1 245555667899988743211 1 12 22
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CCCC--CCcc----h---hhhhhcCCCCEE
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQK--ADVI----E---NSLFTNVKIPIF 239 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~~--~g~~----~---~~~~~~~~~Pv~ 239 (921)
|... |+. .++.-.+-+.+.+..+ .+.|||+|.+| |- |... .|.. . .+.+...++||+
T Consensus 130 k~~~----p~v---~Vi~G~v~t~~~A~~l-~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 130 KKKY----PNV---DVIAGNVVTAEAARDL-IDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred HHHC----CCc---eEEECCCCCHHHHHHH-HhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 3322 331 2444577899999999 89999999874 52 2221 2222 1 233444579999
Q ss_pred EEcCCC-ccChHHHHHcCCcEEEE
Q 002437 240 IMNASP-LVDVSKFLKSGASGFVI 262 (921)
Q Consensus 240 aiGGi~-~~~~~~~~~~Ga~gva~ 262 (921)
|-|||. +.++..++++||++|.+
T Consensus 202 A~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 202 ADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred ecCCCCCHHHHHHHHHcCCCEEEe
Confidence 999996 68999999999999976
No 482
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.49 E-value=0.024 Score=62.45 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=57.8
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CC----CCC--C---C--Ccc-hhhhhhcCCCCEEEEcCC-CccChHHHHH
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQ--K---A--DVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~--~---~--g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
++.-.|-+.+++..+ ...|+|++.+| |- |.. . + ++. ..++++..++||+|-||| ++.++.++++
T Consensus 143 vi~g~V~t~e~a~~l-~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa 221 (326)
T PRK05458 143 VIAGNVGTPEAVREL-ENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR 221 (326)
T ss_pred EEEEecCCHHHHHHH-HHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH
Confidence 455567799999999 89999998877 33 221 1 1 222 356666678999999999 5889999999
Q ss_pred cCCcEEEEeeccc
Q 002437 255 SGASGFVISLEDL 267 (921)
Q Consensus 255 ~Ga~gva~~~a~~ 267 (921)
.||+.|.+-++..
T Consensus 222 ~GA~aV~vG~~~~ 234 (326)
T PRK05458 222 FGATMVMIGSLFA 234 (326)
T ss_pred hCCCEEEechhhc
Confidence 9999997765554
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=96.48 E-value=0.0028 Score=71.43 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
.-+++|+|.+|+|||||+|+|+|...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 35799999999999999999998654
No 484
>PLN02591 tryptophan synthase
Probab=96.48 E-value=0.029 Score=59.67 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=100.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
--|+..... +.+..++.+....++|++++-|=-|-.+ .. ..++.+++++ +. ..+
T Consensus 5 i~yi~aG~P-~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r---~~~~~p 80 (250)
T PLN02591 5 IPYITAGDP-DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVA---PQLSCP 80 (250)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCC
Confidence 345555432 2336678888888999999988665442 21 2222233322 22 445
Q ss_pred EEe------------cCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCC-CccccCeEEEecCC-HHHHHcccccCCC
Q 002437 145 FLI------------AERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMS-ESVVLPLVGRNVQT-LDAAFNASSSEGA 210 (921)
Q Consensus 145 ~iv------------nd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~-~~~~~~~ig~S~h~-~~e~~~A~~~~ga 210 (921)
+++ .+.++-|.+.|+|||-++ |||..+.......-+. +... +.=+|-++ .+.++.. .+..-
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~--I~lv~Ptt~~~ri~~i-a~~~~ 155 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL--VLLTTPTTPTERMKAI-AEASE 155 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE--EEEeCCCCCHHHHHHH-HHhCC
Confidence 444 224667888999999997 6776544332210000 1011 23333333 3334433 23333
Q ss_pred CEEEe-C--CCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 211 DFLVC-C--FGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 211 Dyv~~-g--pvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||-+ | .+|.. +..+. ...+++..++||+.--||+ ++++.++.+.||+||.|-+|.++.
T Consensus 156 gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~ 224 (250)
T PLN02591 156 GFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKA 224 (250)
T ss_pred CcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHh
Confidence 44432 3 34433 22333 3677778899999866997 999999999999999888877654
No 485
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.47 E-value=0.0045 Score=62.24 Aligned_cols=43 Identities=35% Similarity=0.348 Sum_probs=35.6
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH--hhhcCCeEEEEEeCCCCCCC
Q 002437 464 DLVLFVISADRPLTESEVVFLRY--TQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~~--l~~~~~~vivVlNK~D~~~~ 506 (921)
|+|++|+|+..+.+..+..+.+. +...++|+|+|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 89999999999887766676666 55567899999999999743
No 486
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.44 E-value=0.013 Score=59.12 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=43.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~ 505 (921)
++++|||||.... .+...+..+|.+|+|++.+......-..+++.+...+ ....+|+|++|...
T Consensus 64 d~viiD~p~~~~~------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER------GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH------HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999974311 2445567899999999887544333335566665544 45678999998653
No 487
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.41 E-value=0.011 Score=67.88 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.+.+.|+|+.++|||.++++++|+.+.. +..+++.....+..-... |+. +-+.|-|.
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~------------g~~---------k~LiL~ei 481 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK------------GQQ---------KYLILREI 481 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec------------ccc---------ceEEEeec
Confidence 56899999999999999999999987765 333333322221110000 100 12344444
Q ss_pred CCC-ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHh--hhcCCeEEEEEeCCCCCCC
Q 002437 443 PGT-NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT--QQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~-~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l--~~~~~~vivVlNK~D~~~~ 506 (921)
+-. +... ...- ..||++++++|.+++.+.+-...+... ...+.|+++|.+|+|+-..
T Consensus 482 ~~~~~~~l------~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 482 GEDDQDFL------TSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred Cccccccc------cCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchh
Confidence 321 0010 0011 568999999999987665544332222 1266899999999998643
No 488
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.018 Score=65.35 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=39.5
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPR---ADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||........-.-...++.. .+-+++|+|+... ..+. +.++..... .+-=+++||.|-...
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~ 327 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLDETTC 327 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeccCCCc
Confidence 3699999999864332222223333322 2358899999854 2222 333333322 245578999998755
No 489
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.024 Score=61.07 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=41.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-+......-....+++ ...|-+++|+|+.... ..-.++++..+. -..-=+++||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~-~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKD-IHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCC-CCCCEEEEEeecCCCC
Confidence 7899999998633222222222333 3567889999987321 222244554444 2344578999998755
No 490
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.39 E-value=0.027 Score=62.95 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccc-ccCCCeEEeecCCCc--------c
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCE-RHPDGQYICYLPSPI--------L 434 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~p~~~--------l 434 (921)
...|++||+||+||||-+--|..+.... .......-+|.-.|.....+-..... .......+++-|.++ -
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 6789999999999999998887654311 11111222222112111111000000 000001111111111 1
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCC--CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRA--DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~a--D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
.+++||||.|-+..+...-.-+..++..+ .-+.+|++++.. ...-.+++++....... =+++||.|-...-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~s~ 354 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETTSL 354 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccCch
Confidence 37999999998655555545555565333 345566666532 22333455555544332 3578999987653
No 491
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.37 E-value=0.052 Score=63.03 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCeEEEEEeCCCCCCC---h-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 491 KKKVVFVLNKSDLYQN---A-FELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.|++||++|+|.... + .--++...++.+.++.+.-..+.-+|++|.+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~ 249 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEE 249 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccc
Confidence 3599999999997542 1 112344555666666654445677888898764
No 492
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0063 Score=60.09 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=81.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++++++|..+.||+|+++..+-.++... ..+|+. ......+.. ..|++ .+..+|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~-y~at~Gv~~~pl~f~t------------n~g~i----------rf~~wd 65 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKT-YPATLGVEVHPLLFDT------------NRGQI----------RFNVWD 65 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceec-ccCcceeEEeeeeeec------------ccCcE----------EEEeee
Confidence 358999999999999999999876655322 223332 111111111 11222 378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.|.. .....-..|.-.+-..++++|....++-.... +-+.+.+ .+.|+++..||.|..... +.
T Consensus 66 tagqE----k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---------~k 132 (216)
T KOG0096|consen 66 TAGQE----KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---------VK 132 (216)
T ss_pred cccce----eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc---------cc
Confidence 99973 22222233444455667777877666554442 2222222 237999999999986542 01
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..--.+........|.+||++.
T Consensus 133 ~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 133 AKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred cccceeeecccceeEEeecccc
Confidence 1111112224577899999775
No 493
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.23 E-value=0.062 Score=56.87 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHh-cCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC---
Q 002437 102 LDLIDEAVA-KFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP--- 170 (921)
Q Consensus 102 ~~~~~~~l~-~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~--- 170 (921)
.+.++...+ .|++.+++=+=+............+.++|+. +.++.+-. ++.-....||+=|-+|..-+.
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~ 113 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTD 113 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHH
Confidence 455555556 6898888877433322222233445555555 67788743 333455579999999887553
Q ss_pred -HHHHHHhcccCCCCccccCeEEEec---------------CCHHH-HHcccccCCCCEEEeCCC----CCCCCCcc-hh
Q 002437 171 -AIVARNTMKDSMSESVVLPLVGRNV---------------QTLDA-AFNASSSEGADFLVCCFG----EGQKADVI-EN 228 (921)
Q Consensus 171 -~~~~r~~~~~~~~~~~~~~~ig~S~---------------h~~~e-~~~A~~~~gaDyv~~gpv----Tk~~~g~~-~~ 228 (921)
...+...+| + ++ .++.-. .++.+ +.+. ...|+..+++-.+ |...+.++ ..
T Consensus 114 ~l~~~~~~fg----~-~i--vvslD~~~g~v~~~gw~~~~~~~~~~~~~~~-~~~g~~~ii~tdi~~dGt~~G~~~~li~ 185 (234)
T PRK13587 114 WLKEMAHTFP----G-RI--YLSVDAYGEDIKVNGWEEDTELNLFSFVRQL-SDIPLGGIIYTDIAKDGKMSGPNFELTG 185 (234)
T ss_pred HHHHHHHHcC----C-CE--EEEEEeeCCEEEecCCcccCCCCHHHHHHHH-HHcCCCEEEEecccCcCCCCccCHHHHH
Confidence 222222332 2 22 222222 22333 4444 6789998888877 33344444 47
Q ss_pred hhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 229 SLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.+++.+++||++-||+. ++++..+.+.|++||++-.|..+
T Consensus 186 ~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 186 QLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 78888899999999995 68999999999999987666543
No 494
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.22 E-value=0.099 Score=54.37 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC-CCCCHHHH-HHHHHHHHHHhhc---CceEEecCcHH----HHHhC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG-GEASGKSV-YEAACLLKSVVKD---RALFLIAERVD----IAAAV 157 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~-k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~d----la~~~ 157 (921)
++|-||+. +-+..+.+.|++++=+=- +. +.+.. .+.|+.+...++. .+-+++|..++ ++..+
T Consensus 6 KICGi~~~--------eda~~~~~~Gad~iGfI~~~~-S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~ 76 (210)
T PRK01222 6 KICGITTP--------EDAEAAAELGADAIGFVFYPK-SPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV 76 (210)
T ss_pred EECCCCcH--------HHHHHHHHcCCCEEEEccCCC-CCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence 55556654 446677788987765532 22 22222 4566777766653 35677887765 44557
Q ss_pred CCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHccc-ccCCCCEEEeCCCCCC--CCCcch--hhhhh
Q 002437 158 NASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGADFLVCCFGEGQ--KADVIE--NSLFT 232 (921)
Q Consensus 158 ~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~gaDyv~~gpvTk~--~~g~~~--~~~~~ 232 (921)
+.|.|+|-.. .+...++.+.... +- .+ |-..++.+..++..+. ....+||+++-..+.. .-|... ..+..
T Consensus 77 ~~d~vQLHg~-e~~~~~~~l~~~~-~~-~i--ik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~ 151 (210)
T PRK01222 77 PLDLLQLHGD-ETPEFCRQLKRRY-GL-PV--IKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPA 151 (210)
T ss_pred CCCEEEECCC-CCHHHHHHHHhhc-CC-cE--EEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhh
Confidence 8899999543 3443343321000 11 22 3344555544443320 1246899998653221 112221 22313
Q ss_pred cCCCCEEEEcCCCccChHHHHHc-CCcEEEEeecc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKS-GASGFVISLED 266 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~-Ga~gva~~~a~ 266 (921)
..+.||+.-|||+++|+.++... +..||-+++..
T Consensus 152 ~~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 152 GLAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred ccCCCEEEECCCCHHHHHHHHHhcCCCEEEecCce
Confidence 44779999999999999998875 88999765444
No 495
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.21 E-value=0.041 Score=57.08 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=94.5
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---CceEEec-CcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RALFLIA-ERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~~~ivn-d~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
++.++.++.+.++|++++-+- ++.....+..+.+++-+.. |+=-+++ +..+.|.+.||+=+--+. +.....
T Consensus 27 ~~a~~i~~al~~~Gi~~iEit---l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~--~~~~vi 101 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVT---LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG--LTPPLL 101 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEe---cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC--CCHHHH
Confidence 477889999999999998885 3334455566666655432 3323333 457788888886333322 222333
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKF 252 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~ 252 (921)
+.... .+ . .++ --|.++.|+.+| .+.|+|++-+=|-..- -|+. .+.+.... .+|+++.|||+++|+.+.
T Consensus 102 ~~a~~---~~-i--~~i-PG~~TptEi~~a-~~~Ga~~vKlFPa~~~-gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~ 172 (212)
T PRK05718 102 KAAQE---GP-I--PLI-PGVSTPSELMLG-MELGLRTFKFFPAEAS-GGVKMLKALAGPFPDVRFCPTGGISPANYRDY 172 (212)
T ss_pred HHHHH---cC-C--CEe-CCCCCHHHHHHH-HHCCCCEEEEccchhc-cCHHHHHHHhccCCCCeEEEeCCCCHHHHHHH
Confidence 32221 11 1 123 135799999999 8999999999665211 1343 45555443 499999999999999999
Q ss_pred HHcCCcEE
Q 002437 253 LKSGASGF 260 (921)
Q Consensus 253 ~~~Ga~gv 260 (921)
+++|+..+
T Consensus 173 l~ag~v~~ 180 (212)
T PRK05718 173 LALPNVLC 180 (212)
T ss_pred HhCCCEEE
Confidence 99994433
No 496
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.20 E-value=0.012 Score=64.84 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=58.0
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-hcC-CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-QWK-KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (921)
..+..-..+.+..+|+||.|+||.+|+.....++=+.+. ..+ +.+|+|+||+|+++. +.++++..+++..
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~------- 205 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR-EVVEKWLVYLRRE------- 205 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH-HHHHHHHHHHHhh-------
Confidence 445556777789999999999999998655554444442 233 899999999999965 5566666665542
Q ss_pred CCCeEEEecccchH
Q 002437 528 ENVTIYPVSARSTL 541 (921)
Q Consensus 528 ~~~~v~~vSA~~~l 541 (921)
.+.|.+.++....
T Consensus 206 -~ptv~fkast~~~ 218 (435)
T KOG2484|consen 206 -GPTVAFKASTQMQ 218 (435)
T ss_pred -CCcceeecccccc
Confidence 3566676665553
No 497
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.20 E-value=0.04 Score=61.63 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=88.5
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEecCc-----------------HHHHHhCCCC----------
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIAER-----------------VDIAAAVNAS---------- 160 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd~-----------------~dla~~~~a~---------- 160 (921)
++|+..+= .-..+.+++.+..++++++... ++-+++... .+++...+..
T Consensus 34 aGglG~l~--~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (330)
T PF03060_consen 34 AGGLGFLG--AGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALE 111 (330)
T ss_dssp TTSBEEEE--CTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHH
T ss_pred CCCEeecc--ccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccc
Confidence 36666665 5567788888888888888765 555554321 1233344333
Q ss_pred ----eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC-CCCCCCCC-----cc--hh
Q 002437 161 ----GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC-FGEGQKAD-----VI--EN 228 (921)
Q Consensus 161 ----GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g-pvTk~~~g-----~~--~~ 228 (921)
.|-++....+....+.+.. .+ . .+-..+-|+++++.| .+.|+|.|++= +-.--|.| +- ..
T Consensus 112 ~~~~~v~~~~G~p~~~~i~~l~~---~g-i---~v~~~v~s~~~A~~a-~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~ 183 (330)
T PF03060_consen 112 AKPDVVSFGFGLPPPEVIERLHA---AG-I---KVIPQVTSVREARKA-AKAGADAIVAQGPEAGGHRGFEVGSTFSLLP 183 (330)
T ss_dssp S--SEEEEESSSC-HHHHHHHHH---TT-----EEEEEESSHHHHHHH-HHTT-SEEEEE-TTSSEE---SSG-HHHHHH
T ss_pred cceEEEEeecccchHHHHHHHHH---cC-C---ccccccCCHHHHHHh-hhcCCCEEEEeccccCCCCCccccceeeHHH
Confidence 5545444433555555543 33 2 455678899999999 89999998863 32111222 22 36
Q ss_pred hhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEE
Q 002437 229 SLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~ 262 (921)
++++..++||+|-||| +...+..++..||+||.+
T Consensus 184 ~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 184 QVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 7888889999999999 466799999999999977
No 498
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.17 E-value=0.0087 Score=47.56 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCCCEEEEEEeCCCCC---CHHHHHHHHHhhhc--CCeEEEEEeCCC
Q 002437 461 PRADLVLFVISADRPL---TESEVVFLRYTQQW--KKKVVFVLNKSD 502 (921)
Q Consensus 461 ~~aD~il~V~da~~~~---t~~e~~~l~~l~~~--~~~vivVlNK~D 502 (921)
.-.++|+|++|.+... -+++..+++.++.. ++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 5579999999998533 34556788888874 799999999998
No 499
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.15 E-value=0.046 Score=55.97 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=94.1
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
++..+.++.++++|++.+-+--- .....+.++++++-+.. |+ .++=-+..+.|.+.||+=+ ++.. +.....
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~---tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~-~~~~vi 90 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR---TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-VSPG-TTQELL 90 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC---CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCC-CCHHHH
Confidence 47788999999999999988553 33344555556554432 32 3333456778888888533 3222 222222
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEEcCCCccChHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIMNASPLVDVSK 251 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~ 251 (921)
+.... .+ ++.+=|+ -++.|+..| .+.|+|+|=+=|- ... |.. .+.+..-. ++|+++.|||+++|+.+
T Consensus 91 ~~a~~---~~--i~~iPG~--~TptEi~~A-~~~Ga~~vK~FPa--~~~GG~~yikal~~plp~~~l~ptGGV~~~n~~~ 160 (201)
T PRK06015 91 AAAND---SD--VPLLPGA--ATPSEVMAL-REEGYTVLKFFPA--EQAGGAAFLKALSSPLAGTFFCPTGGISLKNARD 160 (201)
T ss_pred HHHHH---cC--CCEeCCC--CCHHHHHHH-HHCCCCEEEECCc--hhhCCHHHHHHHHhhCCCCcEEecCCCCHHHHHH
Confidence 22210 11 1113344 589999999 8999999988774 122 233 35555443 59999999999999999
Q ss_pred HHHcCCcEEE
Q 002437 252 FLKSGASGFV 261 (921)
Q Consensus 252 ~~~~Ga~gva 261 (921)
-+++|+..++
T Consensus 161 ~l~ag~~~~~ 170 (201)
T PRK06015 161 YLSLPNVVCV 170 (201)
T ss_pred HHhCCCeEEE
Confidence 9999977443
No 500
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.13 E-value=0.038 Score=58.84 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=99.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+... ........+.++|+. +.++.+-. ++..+...||+-+-+|..-+. +
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p 111 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENP 111 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCH
Confidence 44577777778999888775532211 111122344455544 66777743 445566679999999886543 1
Q ss_pred HHHHHhcccCCCCccccCeEEE--------------ecCCHHH-HHcccccCCCCEEEeCCCCCC----CCCcc-hhhhh
Q 002437 172 IVARNTMKDSMSESVVLPLVGR--------------NVQTLDA-AFNASSSEGADFLVCCFGEGQ----KADVI-ENSLF 231 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~--------------S~h~~~e-~~~A~~~~gaDyv~~gpvTk~----~~g~~-~~~~~ 231 (921)
..++.+.... ++ .+ .++. +..++.+ +... .+.|++.+++-++|.. .+..+ ..+++
T Consensus 112 ~l~~~i~~~~-~~-~i--~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l-~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~ 186 (241)
T PRK14024 112 EWCARVIAEH-GD-RV--AVGLDVRGHTLAARGWTRDGGDLWEVLERL-DSAGCSRYVVTDVTKDGTLTGPNLELLREVC 186 (241)
T ss_pred HHHHHHHHHh-hh-hE--EEEEEEeccEeccCCeeecCccHHHHHHHH-HhcCCCEEEEEeecCCCCccCCCHHHHHHHH
Confidence 1222221000 11 11 1111 2234444 4555 7899999999888442 33333 47888
Q ss_pred hcCCCCEEEEcCCC-ccChHHHH---HcCCcEEEEeeccccc
Q 002437 232 TNVKIPIFIMNASP-LVDVSKFL---KSGASGFVISLEDLSL 269 (921)
Q Consensus 232 ~~~~~Pv~aiGGi~-~~~~~~~~---~~Ga~gva~~~a~~~~ 269 (921)
+.+++||+|-|||. ++++..+. ..|++||.+.+|....
T Consensus 187 ~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 187 ARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred hhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 88899999999995 67788775 3599999888776553
Done!