Query 002437
Match_columns 921
No_of_seqs 673 out of 5186
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 02:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o63_A Probable thiamine-phosp 100.0 8.7E-34 3E-38 297.3 18.4 177 85-269 29-225 (243)
2 2j69_A Bacterial dynamin-like 100.0 6.7E-29 2.3E-33 300.4 43.7 293 362-674 67-410 (695)
3 3nl6_A Thiamine biosynthetic b 100.0 3E-30 1E-34 299.8 18.0 177 85-269 9-215 (540)
4 3ceu_A Thiamine phosphate pyro 99.9 6.9E-27 2.4E-31 241.9 14.9 165 86-268 1-177 (210)
5 1yad_A Regulatory protein TENI 99.9 4.3E-22 1.5E-26 208.0 17.2 173 86-269 17-198 (221)
6 2tps_A Protein (thiamin phosph 99.9 4.2E-21 1.4E-25 201.4 16.4 174 87-269 19-206 (227)
7 1xi3_A Thiamine phosphate pyro 99.8 7.7E-20 2.6E-24 190.1 17.9 172 87-269 16-196 (215)
8 2yw3_A 4-hydroxy-2-oxoglutarat 99.8 1.7E-19 5.8E-24 185.2 10.9 168 86-268 13-184 (207)
9 4dhe_A Probable GTP-binding pr 99.8 1.4E-17 4.7E-22 173.6 17.9 170 363-583 28-211 (223)
10 1wbh_A KHG/KDPG aldolase; lyas 99.7 2.8E-18 9.4E-23 176.7 11.8 168 87-269 17-190 (214)
11 1mxs_A KDPG aldolase; 2-keto-3 99.7 2.1E-18 7.3E-23 178.6 8.7 168 87-269 27-200 (225)
12 3iev_A GTP-binding protein ERA 99.7 3.1E-17 1.1E-21 179.9 17.6 166 364-584 10-183 (308)
13 3zvr_A Dynamin-1; hydrolase, D 99.7 2.2E-16 7.5E-21 189.1 25.4 172 363-540 50-262 (772)
14 3pqc_A Probable GTP-binding pr 99.7 2.3E-16 7.7E-21 160.1 19.2 162 363-582 22-193 (195)
15 1svi_A GTP-binding protein YSX 99.7 2E-16 6.7E-21 161.0 18.1 161 363-581 22-193 (195)
16 1vhc_A Putative KHG/KDPG aldol 99.7 1.7E-17 6E-22 171.6 10.1 166 87-268 18-190 (224)
17 1wf3_A GTP-binding protein; GT 99.7 2.5E-16 8.4E-21 171.8 18.8 160 364-583 7-173 (301)
18 2qtf_A Protein HFLX, GTP-bindi 99.7 8E-17 2.7E-21 180.0 15.2 324 192-582 7-353 (364)
19 3gee_A MNME, tRNA modification 99.7 9.8E-17 3.3E-21 185.2 16.1 158 362-582 231-397 (476)
20 3iby_A Ferrous iron transport 99.7 5.2E-17 1.8E-21 173.1 11.4 155 365-580 2-164 (256)
21 2qu8_A Putative nucleolar GTP- 99.7 4.4E-16 1.5E-20 163.1 16.0 167 363-582 28-204 (228)
22 1jwy_B Dynamin A GTPase domain 99.7 1.5E-15 5.1E-20 167.1 20.0 193 363-583 23-262 (315)
23 2dyk_A GTP-binding protein; GT 99.7 7.4E-16 2.5E-20 151.2 13.8 155 365-581 2-160 (161)
24 4bas_A ADP-ribosylation factor 99.6 1.3E-15 4.3E-20 155.3 15.0 161 363-582 16-188 (199)
25 2lkc_A Translation initiation 99.6 3.2E-16 1.1E-20 156.7 10.3 163 362-582 6-170 (178)
26 3geh_A MNME, tRNA modification 99.6 1.5E-16 5E-21 183.0 8.8 158 363-584 223-385 (462)
27 3i8s_A Ferrous iron transport 99.6 2.7E-16 9.3E-21 169.5 9.2 160 363-583 2-169 (274)
28 1xzp_A Probable tRNA modificat 99.6 2.1E-15 7.1E-20 174.2 17.0 157 363-582 242-404 (482)
29 2qpt_A EH domain-containing pr 99.6 3.2E-15 1.1E-19 175.9 16.9 163 362-525 63-251 (550)
30 3k53_A Ferrous iron transport 99.6 3.7E-15 1.3E-19 160.4 15.7 159 364-583 3-166 (271)
31 1upt_A ARL1, ADP-ribosylation 99.6 4.6E-15 1.6E-19 147.1 15.2 160 361-582 4-168 (171)
32 1g16_A RAS-related protein SEC 99.6 1.4E-15 4.9E-20 150.5 11.1 159 363-582 2-164 (170)
33 1zd9_A ADP-ribosylation factor 99.6 5.3E-15 1.8E-19 149.8 15.4 159 363-582 21-184 (188)
34 3clv_A RAB5 protein, putative; 99.6 5.3E-15 1.8E-19 150.9 15.5 181 362-582 5-203 (208)
35 3q72_A GTP-binding protein RAD 99.6 3.3E-15 1.1E-19 147.4 13.4 156 364-582 2-163 (166)
36 1ksh_A ARF-like protein 2; sma 99.6 8.2E-15 2.8E-19 147.8 16.3 159 362-582 16-179 (186)
37 2hjg_A GTP-binding protein ENG 99.6 1.3E-15 4.3E-20 175.4 11.7 166 363-582 174-348 (436)
38 3lxw_A GTPase IMAP family memb 99.6 1E-14 3.4E-19 154.7 17.4 172 363-583 20-208 (247)
39 2aka_B Dynamin-1; fusion prote 99.6 7.3E-15 2.5E-19 160.3 16.7 174 363-540 25-237 (299)
40 1r8s_A ADP-ribosylation factor 99.6 1.4E-14 4.8E-19 142.6 16.9 156 365-582 1-161 (164)
41 3t34_A Dynamin-related protein 99.6 3.2E-15 1.1E-19 167.8 13.7 173 363-542 33-247 (360)
42 1ega_A Protein (GTP-binding pr 99.6 4.7E-15 1.6E-19 161.9 14.7 162 364-583 8-175 (301)
43 3a1s_A Iron(II) transport prot 99.6 1.7E-15 5.9E-20 161.6 11.0 159 363-582 4-166 (258)
44 3b1v_A Ferrous iron uptake tra 99.6 1.5E-14 5.1E-19 155.3 18.1 158 363-582 2-163 (272)
45 2g6b_A RAS-related protein RAB 99.6 3.2E-15 1.1E-19 149.7 11.8 160 362-582 8-173 (180)
46 4dcu_A GTP-binding protein ENG 99.6 2.7E-15 9.2E-20 173.6 12.9 167 362-582 193-368 (456)
47 2efe_B Small GTP-binding prote 99.6 5.4E-15 1.9E-19 148.1 13.3 160 363-583 11-175 (181)
48 1wms_A RAB-9, RAB9, RAS-relate 99.6 1E-14 3.5E-19 145.5 15.3 159 363-582 6-173 (177)
49 3cph_A RAS-related protein SEC 99.6 4.1E-15 1.4E-19 153.4 12.6 160 362-582 18-181 (213)
50 1mky_A Probable GTP-binding pr 99.6 7.5E-15 2.6E-19 169.1 16.2 143 365-540 2-150 (439)
51 2gj8_A MNME, tRNA modification 99.6 2.8E-15 9.5E-20 149.8 10.8 155 363-582 3-165 (172)
52 3tw8_B RAS-related protein RAB 99.6 1.6E-15 5.6E-20 151.7 9.1 160 362-582 7-170 (181)
53 2v82_A 2-dehydro-3-deoxy-6-pho 99.6 3.3E-15 1.1E-19 154.7 11.5 153 99-269 19-182 (212)
54 3tkl_A RAS-related protein RAB 99.6 3.6E-15 1.2E-19 151.6 11.4 159 363-582 15-178 (196)
55 2h57_A ADP-ribosylation factor 99.6 6.1E-15 2.1E-19 149.4 13.0 160 363-582 20-186 (190)
56 1ek0_A Protein (GTP-binding pr 99.6 3.1E-15 1.1E-19 147.9 10.3 157 364-582 3-168 (170)
57 1zbd_A Rabphilin-3A; G protein 99.6 1E-14 3.4E-19 149.4 14.4 158 363-582 7-170 (203)
58 2ce2_X GTPase HRAS; signaling 99.6 1.1E-14 3.8E-19 143.0 14.1 157 364-582 3-164 (166)
59 1z08_A RAS-related protein RAB 99.6 6.8E-15 2.3E-19 145.7 12.5 158 363-582 5-168 (170)
60 1z0j_A RAB-22, RAS-related pro 99.6 5.7E-15 1.9E-19 146.1 12.0 156 363-582 5-168 (170)
61 2x2e_A Dynamin-1; nitration, h 99.6 2.7E-14 9.1E-19 159.7 18.7 174 363-540 30-242 (353)
62 2nzj_A GTP-binding protein REM 99.6 1.4E-14 4.7E-19 144.2 14.6 159 363-582 3-168 (175)
63 1u8z_A RAS-related protein RAL 99.6 8.1E-15 2.8E-19 144.4 12.7 158 363-582 3-166 (168)
64 3bc1_A RAS-related protein RAB 99.6 1.1E-14 3.8E-19 147.3 13.9 165 363-582 10-184 (195)
65 1zj6_A ADP-ribosylation factor 99.6 2E-14 6.9E-19 145.2 15.8 159 362-583 14-178 (187)
66 2erx_A GTP-binding protein DI- 99.6 4.9E-15 1.7E-19 146.7 11.0 159 363-583 2-167 (172)
67 4dsu_A GTPase KRAS, isoform 2B 99.6 1E-14 3.6E-19 147.0 13.6 158 363-582 3-165 (189)
68 1z0f_A RAB14, member RAS oncog 99.6 8.5E-15 2.9E-19 146.2 12.5 159 362-582 13-177 (179)
69 2il1_A RAB12; G-protein, GDP, 99.6 6.2E-15 2.1E-19 149.9 11.4 159 363-582 25-189 (192)
70 1kao_A RAP2A; GTP-binding prot 99.6 6.3E-15 2.2E-19 145.0 11.0 157 364-582 3-165 (167)
71 2xtp_A GTPase IMAP family memb 99.6 2.4E-14 8.3E-19 153.0 16.4 119 363-506 21-154 (260)
72 1c1y_A RAS-related protein RAP 99.6 7.5E-15 2.6E-19 144.8 11.5 157 364-581 3-165 (167)
73 2h17_A ADP-ribosylation factor 99.6 1.3E-14 4.3E-19 146.0 13.3 154 363-579 20-179 (181)
74 2hjg_A GTP-binding protein ENG 99.6 6.8E-15 2.3E-19 169.2 12.6 142 364-540 3-149 (436)
75 3t5d_A Septin-7; GTP-binding p 99.6 1.2E-14 3.9E-19 156.8 13.6 152 363-540 7-188 (274)
76 1x3s_A RAS-related protein RAB 99.6 1.4E-14 4.7E-19 147.0 13.4 159 363-583 14-178 (195)
77 1r2q_A RAS-related protein RAB 99.6 1.4E-14 4.8E-19 143.1 13.1 156 363-582 5-168 (170)
78 2bme_A RAB4A, RAS-related prot 99.6 1.6E-14 5.5E-19 145.4 13.6 160 362-582 8-172 (186)
79 2fg5_A RAB-22B, RAS-related pr 99.6 1.3E-14 4.3E-19 147.5 13.0 158 362-583 21-186 (192)
80 3con_A GTPase NRAS; structural 99.6 3.1E-14 1.1E-18 144.1 15.8 158 363-582 20-182 (190)
81 1mh1_A RAC1; GTP-binding, GTPa 99.6 9.9E-15 3.4E-19 146.7 11.8 165 363-583 4-180 (186)
82 2fh5_B SR-beta, signal recogni 99.6 4.8E-14 1.6E-18 145.7 17.3 131 363-522 6-145 (214)
83 1ky3_A GTP-binding protein YPT 99.6 1.9E-14 6.4E-19 144.0 13.7 160 363-582 7-177 (182)
84 2gf0_A GTP-binding protein DI- 99.6 2.3E-14 7.8E-19 146.0 14.4 161 362-584 6-172 (199)
85 1vg8_A RAS-related protein RAB 99.6 1.1E-14 3.9E-19 149.3 12.2 159 363-582 7-174 (207)
86 4gzl_A RAS-related C3 botulinu 99.6 6.7E-15 2.3E-19 151.3 10.4 164 362-581 28-203 (204)
87 3lxx_A GTPase IMAP family memb 99.6 1.3E-14 4.4E-19 153.1 12.8 151 363-539 28-192 (239)
88 2e87_A Hypothetical protein PH 99.6 9.7E-14 3.3E-18 155.4 20.6 161 362-582 165-335 (357)
89 1z2a_A RAS-related protein RAB 99.6 9.2E-15 3.1E-19 144.3 10.8 158 363-582 4-166 (168)
90 2wji_A Ferrous iron transport 99.6 1E-14 3.5E-19 144.4 11.2 157 364-581 3-163 (165)
91 2bov_A RAla, RAS-related prote 99.6 2.3E-14 7.7E-19 146.9 13.9 158 363-582 13-176 (206)
92 2cxx_A Probable GTP-binding pr 99.6 3.7E-14 1.3E-18 143.2 15.3 157 365-583 2-184 (190)
93 2y8e_A RAB-protein 6, GH09086P 99.6 1E-14 3.4E-19 145.6 10.7 158 363-582 13-176 (179)
94 2gco_A H9, RHO-related GTP-bin 99.5 1.5E-14 5E-19 148.2 12.1 164 363-582 24-199 (201)
95 2gf9_A RAS-related protein RAB 99.5 5.8E-15 2E-19 149.5 9.0 158 363-582 21-184 (189)
96 2oil_A CATX-8, RAS-related pro 99.5 9.3E-15 3.2E-19 148.4 10.5 161 361-582 22-187 (193)
97 2a9k_A RAS-related protein RAL 99.5 2.2E-14 7.5E-19 144.2 12.8 158 363-582 17-180 (187)
98 2bcg_Y Protein YP2, GTP-bindin 99.5 1.6E-14 5.5E-19 148.3 11.9 159 362-582 6-170 (206)
99 4djt_A GTP-binding nuclear pro 99.5 5.8E-15 2E-19 153.1 8.4 163 362-584 9-176 (218)
100 3reg_A RHO-like small GTPase; 99.5 2.1E-14 7.2E-19 146.0 12.2 161 362-583 21-188 (194)
101 2x77_A ADP-ribosylation factor 99.5 1.6E-14 5.6E-19 146.1 11.3 158 363-582 21-183 (189)
102 2b6h_A ADP-ribosylation factor 99.5 3E-14 1E-18 144.9 13.3 158 363-582 28-190 (192)
103 2j1l_A RHO-related GTP-binding 99.5 1.4E-14 4.6E-19 150.1 10.9 163 363-582 33-208 (214)
104 1wb1_A Translation elongation 99.5 3.8E-14 1.3E-18 164.5 15.7 163 363-581 18-187 (482)
105 4dcu_A GTP-binding protein ENG 99.5 2.1E-14 7E-19 166.2 13.4 143 363-540 22-169 (456)
106 2p5s_A RAS and EF-hand domain 99.5 3.8E-15 1.3E-19 152.3 6.3 161 363-582 27-196 (199)
107 2ew1_A RAS-related protein RAB 99.5 2.2E-14 7.4E-19 147.2 12.0 160 361-582 23-188 (201)
108 1fzq_A ADP-ribosylation factor 99.5 6.2E-14 2.1E-18 141.1 15.1 159 362-582 14-177 (181)
109 3q85_A GTP-binding protein REM 99.5 1.3E-14 4.5E-19 143.5 9.9 159 364-582 2-166 (169)
110 3oes_A GTPase rhebl1; small GT 99.5 8.7E-15 3E-19 149.9 8.8 159 363-583 23-187 (201)
111 2fn4_A P23, RAS-related protei 99.5 2.1E-14 7.1E-19 143.6 11.1 158 363-582 8-171 (181)
112 2fu5_C RAS-related protein RAB 99.5 1.1E-14 3.8E-19 146.3 9.0 159 362-582 6-170 (183)
113 2a5j_A RAS-related protein RAB 99.5 9.5E-15 3.2E-19 148.2 8.5 159 363-582 20-183 (191)
114 3dz8_A RAS-related protein RAB 99.5 8.7E-15 3E-19 148.5 8.2 158 362-582 21-185 (191)
115 3bwd_D RAC-like GTP-binding pr 99.5 1.3E-14 4.5E-19 145.4 9.5 163 363-582 7-180 (182)
116 2q3h_A RAS homolog gene family 99.5 1.5E-14 5E-19 148.0 9.9 165 362-582 18-194 (201)
117 2atx_A Small GTP binding prote 99.5 1.5E-14 5.3E-19 146.9 10.1 162 364-582 18-192 (194)
118 1moz_A ARL1, ADP-ribosylation 99.5 2.4E-14 8E-19 143.8 11.3 158 362-582 16-179 (183)
119 2fv8_A H6, RHO-related GTP-bin 99.5 1.9E-14 6.5E-19 148.1 10.8 164 364-583 25-200 (207)
120 1tqj_A Ribulose-phosphate 3-ep 99.5 8.7E-15 3E-19 152.9 8.2 162 100-269 18-207 (230)
121 2hup_A RAS-related protein RAB 99.5 5.1E-14 1.8E-18 144.3 13.8 159 362-582 27-192 (201)
122 3kkq_A RAS-related protein M-R 99.5 3.1E-14 1.1E-18 143.0 12.0 158 363-582 17-181 (183)
123 1m2o_B GTP-binding protein SAR 99.5 6.6E-14 2.2E-18 142.1 14.4 155 363-580 22-189 (190)
124 2f7s_A C25KG, RAS-related prot 99.5 2.7E-14 9.3E-19 147.9 11.7 167 362-582 23-198 (217)
125 3sjy_A Translation initiation 99.5 1.7E-13 5.9E-18 155.9 19.0 182 362-583 6-192 (403)
126 3t5g_A GTP-binding protein RHE 99.5 2.1E-14 7.2E-19 144.0 10.1 159 363-583 5-169 (181)
127 1f6b_A SAR1; gtpases, N-termin 99.5 5.3E-14 1.8E-18 143.8 13.1 160 362-581 23-197 (198)
128 2o52_A RAS-related protein RAB 99.5 2.3E-14 7.9E-19 146.7 10.4 161 361-582 22-187 (200)
129 2j0v_A RAC-like GTP-binding pr 99.5 2.7E-14 9.3E-19 147.3 10.7 161 363-584 8-181 (212)
130 3t1o_A Gliding protein MGLA; G 99.5 6.3E-14 2.1E-18 142.2 13.0 162 363-582 13-191 (198)
131 2yc2_C IFT27, small RAB-relate 99.5 3.7E-14 1.3E-18 145.4 11.3 158 363-582 19-191 (208)
132 3p32_A Probable GTPase RV1496/ 99.5 4.9E-13 1.7E-17 149.4 21.3 217 324-582 37-283 (355)
133 1mky_A Probable GTP-binding pr 99.5 5.5E-14 1.9E-18 161.8 13.9 166 363-582 179-354 (439)
134 2hxs_A RAB-26, RAS-related pro 99.5 3.2E-14 1.1E-18 142.0 10.4 160 363-583 5-173 (178)
135 1z06_A RAS-related protein RAB 99.5 6.8E-14 2.3E-18 141.5 12.8 144 363-540 19-169 (189)
136 2iwr_A Centaurin gamma 1; ANK 99.5 1E-13 3.6E-18 138.5 14.0 153 363-582 6-168 (178)
137 2atv_A RERG, RAS-like estrogen 99.5 1E-13 3.5E-18 141.2 13.7 157 363-582 27-190 (196)
138 1m7b_A RND3/RHOE small GTP-bin 99.5 1.2E-13 4.1E-18 139.2 13.8 117 363-506 6-126 (184)
139 2c78_A Elongation factor TU-A; 99.5 1.9E-13 6.5E-18 155.7 16.4 196 363-582 10-211 (405)
140 3cbq_A GTP-binding protein REM 99.5 7.8E-14 2.7E-18 142.2 11.7 161 362-582 21-187 (195)
141 3qq5_A Small GTP-binding prote 99.5 1.8E-14 6E-19 163.5 7.4 160 363-583 33-196 (423)
142 3llu_A RAS-related GTP-binding 99.5 2.2E-13 7.4E-18 138.9 14.7 149 363-539 19-181 (196)
143 2wjg_A FEOB, ferrous iron tran 99.5 4.1E-14 1.4E-18 142.8 9.3 160 363-583 6-169 (188)
144 1h65_A Chloroplast outer envel 99.5 8.3E-13 2.8E-17 141.9 20.0 120 363-506 38-169 (270)
145 3cpj_B GTP-binding protein YPT 99.5 3.3E-14 1.1E-18 148.1 8.7 162 362-584 11-177 (223)
146 3j2k_7 ERF3, eukaryotic polype 99.5 2.9E-13 1E-17 155.4 17.1 171 363-541 16-210 (439)
147 3q3j_B RHO-related GTP-binding 99.5 1.2E-13 3.9E-18 143.2 12.4 163 363-583 26-203 (214)
148 1lnz_A SPO0B-associated GTP-bi 99.5 7.4E-15 2.5E-19 162.4 3.4 162 364-584 158-331 (342)
149 1d2e_A Elongation factor TU (E 99.5 3.4E-13 1.2E-17 153.1 17.0 174 363-583 2-195 (397)
150 1gwn_A RHO-related GTP-binding 99.5 5.9E-14 2E-18 144.4 9.5 117 363-506 27-147 (205)
151 3r7w_A Gtpase1, GTP-binding pr 99.5 3.7E-13 1.3E-17 147.4 15.9 153 363-539 2-165 (307)
152 3o47_A ADP-ribosylation factor 99.5 1.2E-13 4.1E-18 152.7 12.1 158 363-582 164-326 (329)
153 3def_A T7I23.11 protein; chlor 99.5 1.6E-12 5.3E-17 139.1 20.3 119 363-505 35-165 (262)
154 3th5_A RAS-related C3 botulinu 99.2 4.2E-15 1.4E-19 152.6 0.0 151 363-540 29-189 (204)
155 2www_A Methylmalonic aciduria 99.5 3.1E-12 1.1E-16 142.4 22.6 219 322-582 20-278 (349)
156 3ihw_A Centg3; RAS, centaurin, 99.5 3.1E-13 1.1E-17 136.4 13.2 152 363-582 19-179 (184)
157 3c5c_A RAS-like protein 12; GD 99.5 1.9E-13 6.4E-18 138.3 11.3 156 363-581 20-184 (187)
158 3lvq_E ARF-GAP with SH3 domain 99.4 4.2E-13 1.4E-17 157.3 14.1 159 363-583 321-484 (497)
159 3p26_A Elongation factor 1 alp 99.4 5.8E-13 2E-17 155.1 14.9 171 362-540 31-222 (483)
160 2wkq_A NPH1-1, RAS-related C3 99.4 2.6E-13 9E-18 150.0 11.5 167 362-582 153-329 (332)
161 3izq_1 HBS1P, elongation facto 99.4 4.8E-13 1.6E-17 159.2 14.2 174 360-541 163-357 (611)
162 3tr5_A RF-3, peptide chain rel 99.4 1E-12 3.4E-17 153.7 16.5 129 363-506 12-149 (528)
163 2elf_A Protein translation elo 99.4 6.7E-13 2.3E-17 148.7 14.4 153 366-582 23-179 (370)
164 1kk1_A EIF2gamma; initiation o 99.4 1.6E-12 5.4E-17 148.4 17.6 183 362-583 8-200 (410)
165 1nrj_B SR-beta, signal recogni 99.4 2.5E-13 8.4E-18 140.8 9.9 150 362-542 10-170 (218)
166 3l0i_B RAS-related protein RAB 99.4 2.3E-15 8E-20 153.9 -6.2 159 363-582 32-195 (199)
167 1zun_B Sulfate adenylate trans 99.4 1.4E-12 4.8E-17 149.8 16.3 171 363-541 23-209 (434)
168 1h1y_A D-ribulose-5-phosphate 99.4 2.4E-13 8.1E-18 142.2 9.0 162 100-269 20-207 (228)
169 4dkx_A RAS-related protein RAB 99.4 4.4E-13 1.5E-17 138.8 10.6 157 364-582 13-175 (216)
170 1s0u_A EIF-2-gamma, translatio 99.4 2.6E-12 9E-17 146.3 17.3 183 363-583 7-198 (408)
171 2g3y_A GTP-binding protein GEM 99.4 1.8E-12 6E-17 133.9 14.1 160 363-582 36-202 (211)
172 2zej_A Dardarin, leucine-rich 99.4 8.1E-13 2.8E-17 133.2 11.3 168 364-583 2-178 (184)
173 3izy_P Translation initiation 99.4 1.1E-14 3.6E-19 169.6 -3.3 163 362-581 2-166 (537)
174 1g7s_A Translation initiation 99.4 4E-13 1.4E-17 158.9 9.8 131 363-505 4-136 (594)
175 3gj0_A GTP-binding nuclear pro 99.4 1.7E-13 5.8E-18 142.4 5.8 157 363-584 14-176 (221)
176 3avx_A Elongation factor TS, e 99.4 2.8E-12 9.5E-17 157.5 16.0 167 362-541 294-463 (1289)
177 2p67_A LAO/AO transport system 99.4 2.4E-11 8.1E-16 134.9 21.6 218 322-582 12-260 (341)
178 1f60_A Elongation factor EEF1A 99.4 8.9E-13 3E-17 152.2 10.4 102 436-542 86-198 (458)
179 2ywe_A GTP-binding protein LEP 99.4 2.6E-12 8.8E-17 151.4 14.4 176 363-583 5-184 (600)
180 1pui_A ENGB, probable GTP-bind 99.4 1.3E-11 4.5E-16 126.8 17.9 166 361-583 23-199 (210)
181 3cb4_D GTP-binding protein LEP 99.4 2.6E-12 9E-17 151.7 14.1 176 363-583 3-182 (599)
182 2ged_A SR-beta, signal recogni 99.3 2.7E-12 9.3E-17 130.0 10.4 132 362-524 46-188 (193)
183 1wxq_A GTP-binding protein; st 99.3 4.9E-12 1.7E-16 142.8 13.3 107 365-475 1-114 (397)
184 1jny_A EF-1-alpha, elongation 99.3 4.2E-12 1.4E-16 145.8 12.7 101 436-540 85-197 (435)
185 2cjw_A GTP-binding protein GEM 99.3 3.3E-12 1.1E-16 129.8 8.9 160 363-582 5-171 (192)
186 1r5b_A Eukaryotic peptide chai 99.3 4.3E-12 1.5E-16 146.8 10.9 102 436-541 122-237 (467)
187 1ka9_F Imidazole glycerol phos 99.3 1.7E-12 5.8E-17 138.0 6.8 164 100-270 32-232 (252)
188 1zo1_I IF2, translation initia 99.3 8.2E-13 2.8E-17 152.4 4.3 148 362-540 2-151 (501)
189 3mca_A HBS1, elongation factor 99.3 7.7E-13 2.6E-17 157.0 3.6 173 362-541 175-368 (592)
190 3dpu_A RAB family protein; roc 99.3 2.4E-12 8.2E-17 152.0 7.7 166 362-583 39-208 (535)
191 2qag_A Septin-2, protein NEDD5 99.3 9E-12 3.1E-16 139.3 11.7 152 363-540 36-218 (361)
192 1vc4_A Indole-3-glycerol phosp 99.3 3.6E-13 1.2E-17 142.2 -0.0 157 100-270 66-243 (254)
193 3qja_A IGPS, indole-3-glycerol 99.3 1.4E-11 4.8E-16 131.1 11.4 162 100-272 73-251 (272)
194 1rpx_A Protein (ribulose-phosp 99.3 7.8E-12 2.7E-16 130.9 9.1 161 99-269 23-213 (230)
195 2h5e_A Peptide chain release f 99.3 5.6E-11 1.9E-15 139.1 17.2 146 363-520 12-161 (529)
196 4a9a_A Ribosome-interacting GT 99.2 1.3E-11 4.4E-16 137.4 10.6 115 364-504 72-195 (376)
197 2xex_A Elongation factor G; GT 99.2 4.6E-11 1.6E-15 144.4 15.8 160 362-539 8-170 (693)
198 2f9l_A RAB11B, member RAS onco 99.2 2.1E-11 7.4E-16 124.3 11.0 158 363-582 4-167 (199)
199 2fli_A Ribulose-phosphate 3-ep 99.2 1.2E-11 4E-16 128.7 8.0 163 99-269 16-204 (220)
200 2qm8_A GTPase/ATPase; G protei 99.2 9.4E-10 3.2E-14 121.6 23.3 217 322-582 11-260 (337)
201 1thf_D HISF protein; thermophI 99.2 2.3E-11 7.8E-16 129.3 9.8 164 100-270 31-231 (253)
202 1dar_A EF-G, elongation factor 99.2 9.8E-11 3.3E-15 141.6 16.4 156 363-537 11-170 (691)
203 3vqt_A RF-3, peptide chain rel 99.2 4.7E-11 1.6E-15 140.3 13.1 147 363-521 30-180 (548)
204 1jal_A YCHF protein; nucleotid 99.2 9.6E-11 3.3E-15 129.6 14.1 102 365-474 3-108 (363)
205 1f5n_A Interferon-induced guan 99.2 2.2E-07 7.6E-12 108.9 43.2 98 363-485 37-143 (592)
206 2rdo_7 EF-G, elongation factor 99.2 2.7E-10 9.1E-15 137.9 17.8 151 362-521 8-162 (704)
207 1oix_A RAS-related protein RAB 99.1 7.4E-11 2.5E-15 119.6 9.4 143 363-540 28-176 (191)
208 3c5h_A Glucocorticoid receptor 99.1 5.3E-11 1.8E-15 126.6 8.3 85 462-581 162-253 (255)
209 2dy1_A Elongation factor G; tr 99.1 3.4E-10 1.2E-14 136.3 16.2 146 362-520 7-152 (665)
210 1qo2_A Molecule: N-((5-phospho 99.1 1.3E-11 4.3E-16 130.3 3.1 160 100-269 31-229 (241)
211 1vzw_A Phosphoribosyl isomeras 99.1 1.4E-11 4.9E-16 130.2 3.2 163 100-271 33-230 (244)
212 2w6r_A Imidazole glycerol phos 99.1 1E-10 3.6E-15 125.2 10.0 167 100-270 31-236 (266)
213 3szr_A Interferon-induced GTP- 99.1 5.9E-08 2E-12 115.7 34.7 142 364-506 45-229 (608)
214 2qjg_A Putative aldolase MJ040 99.1 7.8E-11 2.7E-15 126.7 8.6 134 101-272 101-246 (273)
215 3tdn_A FLR symmetric alpha-bet 99.1 1.2E-11 4.1E-16 130.9 2.1 163 100-269 36-235 (247)
216 1udx_A The GTP-binding protein 99.1 3.3E-10 1.1E-14 128.1 13.9 162 363-584 156-326 (416)
217 2qag_C Septin-7; cell cycle, c 99.1 9E-10 3.1E-14 124.6 17.1 151 364-540 31-211 (418)
218 4e38_A Keto-hydroxyglutarate-a 99.1 2.5E-10 8.6E-15 117.5 10.9 158 99-268 46-207 (232)
219 1n0u_A EF-2, elongation factor 99.1 1.8E-10 6.1E-15 142.1 11.1 171 361-540 16-217 (842)
220 3r7w_B Gtpase2, GTP-binding pr 99.1 9.3E-10 3.2E-14 119.5 15.2 143 366-539 1-158 (331)
221 3bw2_A 2-nitropropane dioxygen 99.1 1.6E-10 5.6E-15 129.5 9.0 149 112-268 66-242 (369)
222 2dby_A GTP-binding protein; GD 99.0 3.9E-10 1.3E-14 125.6 10.6 106 365-474 2-111 (368)
223 2wsm_A Hydrogenase expression/ 99.0 3E-10 1E-14 117.6 8.7 104 436-583 110-214 (221)
224 3j25_A Tetracycline resistance 99.0 1.4E-10 4.7E-15 139.1 6.8 132 365-506 3-134 (638)
225 2qag_B Septin-6, protein NEDD5 99.0 8.1E-10 2.8E-14 124.4 12.5 146 365-537 43-217 (427)
226 3cu2_A Ribulose-5-phosphate 3- 99.0 8.1E-11 2.8E-15 122.4 3.4 160 100-269 27-223 (237)
227 1w8s_A FBP aldolase, fructose- 99.0 4.1E-10 1.4E-14 119.6 8.5 132 100-269 93-237 (263)
228 2y88_A Phosphoribosyl isomeras 99.0 7.2E-11 2.5E-15 124.7 2.7 162 100-270 32-232 (244)
229 1rd5_A Tryptophan synthase alp 99.0 4E-10 1.4E-14 120.2 8.3 176 87-269 21-236 (262)
230 1yrb_A ATP(GTP)binding protein 99.0 2.7E-09 9.1E-14 113.6 13.6 117 436-582 110-256 (262)
231 1h5y_A HISF; histidine biosynt 99.0 7.2E-10 2.5E-14 117.4 8.3 163 100-269 34-233 (253)
232 3h2y_A GTPase family protein; 98.9 6.6E-11 2.3E-15 132.4 -0.6 130 364-521 160-302 (368)
233 2nv1_A Pyridoxal biosynthesis 98.9 1.6E-10 5.6E-15 126.0 2.3 162 102-269 31-244 (305)
234 1y0e_A Putative N-acetylmannos 98.9 2.4E-09 8.1E-14 111.4 10.9 150 100-268 24-209 (223)
235 3ec1_A YQEH GTPase; atnos1, at 98.9 5.9E-11 2E-15 132.9 -1.6 130 364-521 162-303 (369)
236 3tsm_A IGPS, indole-3-glycerol 98.9 1.1E-09 3.9E-14 115.7 7.6 162 100-272 80-258 (272)
237 1yxy_A Putative N-acetylmannos 98.9 1.1E-08 3.9E-13 107.0 14.9 149 100-268 37-220 (234)
238 1x1o_A Nicotinate-nucleotide p 98.9 5.3E-10 1.8E-14 119.0 4.7 133 110-264 130-269 (286)
239 4fn5_A EF-G 1, elongation fact 98.9 2.2E-09 7.5E-14 130.4 10.1 150 363-521 12-165 (709)
240 2zbt_A Pyridoxal biosynthesis 98.9 1.4E-09 4.9E-14 118.2 6.2 161 102-269 31-244 (297)
241 2qnr_A Septin-2, protein NEDD5 98.9 6.7E-09 2.3E-13 113.0 11.5 156 364-540 18-199 (301)
242 3sop_A Neuronal-specific septi 98.9 2E-08 6.9E-13 107.3 14.4 143 365-524 3-172 (270)
243 1tq4_A IIGP1, interferon-induc 98.8 1.5E-07 5.2E-12 106.0 19.4 174 363-583 68-253 (413)
244 3ajx_A 3-hexulose-6-phosphate 98.8 2E-08 6.9E-13 103.0 10.7 171 87-269 2-192 (207)
245 1to3_A Putative aldolase YIHT; 98.7 2E-08 7E-13 108.5 9.3 132 103-269 112-260 (304)
246 3bo9_A Putative nitroalkan dio 98.7 1.2E-07 4.2E-12 104.0 13.5 155 103-268 41-210 (326)
247 2z6i_A Trans-2-enoyl-ACP reduc 98.6 7.1E-08 2.4E-12 106.4 10.7 155 103-268 27-196 (332)
248 2hf9_A Probable hydrogenase ni 98.6 5.6E-08 1.9E-12 100.8 7.7 103 436-582 120-223 (226)
249 3igs_A N-acetylmannosamine-6-p 98.6 2.9E-07 1E-11 95.7 12.7 150 100-268 37-215 (232)
250 3q58_A N-acetylmannosamine-6-p 98.6 2.3E-07 8E-12 96.1 11.8 151 100-269 37-216 (229)
251 2gjl_A Hypothetical protein PA 98.5 3.5E-07 1.2E-11 100.7 13.1 155 103-268 30-206 (328)
252 3iwp_A Copper homeostasis prot 98.5 5.1E-08 1.7E-12 102.2 5.9 151 103-261 50-236 (287)
253 1zcb_A G alpha I/13; GTP-bindi 98.5 2.5E-07 8.5E-12 102.8 11.7 101 436-540 202-337 (362)
254 2j37_W Signal recognition part 98.5 2.1E-07 7.2E-12 107.4 10.9 130 363-506 100-255 (504)
255 2ohf_A Protein OLA1, GTP-bindi 98.5 8.6E-08 3E-12 107.0 6.4 109 359-474 17-128 (396)
256 1geq_A Tryptophan synthase alp 98.5 1.8E-07 6.1E-12 98.8 8.5 159 100-269 20-226 (248)
257 4fo4_A Inosine 5'-monophosphat 98.5 1E-06 3.5E-11 97.4 14.4 152 106-268 65-245 (366)
258 3khj_A Inosine-5-monophosphate 98.5 1.1E-06 3.6E-11 97.4 13.8 150 107-268 65-241 (361)
259 1cip_A Protein (guanine nucleo 98.5 4.4E-07 1.5E-11 100.5 10.6 101 436-540 194-328 (353)
260 1wa3_A 2-keto-3-deoxy-6-phosph 98.4 2.2E-07 7.6E-12 95.1 6.6 89 171-268 52-183 (205)
261 1t3j_A Mitofusin 1; coiled coi 98.3 6.2E-07 2.1E-11 77.0 5.5 66 854-919 19-84 (96)
262 1tqx_A D-ribulose-5-phosphate 98.3 2.5E-07 8.6E-12 95.5 3.5 169 91-268 8-206 (227)
263 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 8.2E-07 2.8E-11 99.4 6.9 108 360-474 16-127 (392)
264 4fid_A G protein alpha subunit 98.2 1E-05 3.6E-10 88.5 14.5 82 436-521 162-274 (340)
265 1puj_A YLQF, conserved hypothe 98.2 1.3E-06 4.3E-11 93.9 6.5 36 361-396 117-152 (282)
266 3dm5_A SRP54, signal recogniti 98.2 6.2E-06 2.1E-10 93.2 12.3 90 436-538 184-275 (443)
267 3ctl_A D-allulose-6-phosphate 98.2 2.9E-06 1E-10 87.9 8.5 159 100-269 14-202 (231)
268 3ohm_A Guanine nucleotide-bind 98.2 9.2E-06 3.2E-10 88.6 12.7 101 436-540 168-302 (327)
269 1xm3_A Thiazole biosynthesis p 98.1 6.6E-06 2.3E-10 87.3 10.3 169 87-269 14-213 (264)
270 3glc_A Aldolase LSRF; TIM barr 98.1 7.1E-06 2.4E-10 87.7 10.1 130 100-270 126-264 (295)
271 2v3c_C SRP54, signal recogniti 98.1 8.6E-06 2.9E-10 92.6 11.4 69 436-506 182-253 (432)
272 3inp_A D-ribulose-phosphate 3- 98.1 4.5E-06 1.5E-10 86.9 7.5 171 89-269 28-229 (246)
273 3ovp_A Ribulose-phosphate 3-ep 98.1 1.1E-05 3.7E-10 83.5 10.0 171 91-269 7-203 (228)
274 1o4u_A Type II quinolic acid p 97.9 7.8E-06 2.7E-10 86.7 5.6 87 170-268 182-273 (285)
275 1u0l_A Probable GTPase ENGC; p 97.9 2.7E-05 9.2E-10 84.5 8.9 92 436-540 64-157 (301)
276 3cnl_A YLQF, putative uncharac 97.8 1.2E-05 4.2E-10 85.2 5.8 31 365-395 100-130 (262)
277 3kl4_A SRP54, signal recogniti 97.8 3E-05 1E-09 87.6 8.9 89 436-537 181-273 (433)
278 2yzr_A Pyridoxal biosynthesis 97.8 6.4E-07 2.2E-11 95.4 -4.5 77 193-270 173-278 (330)
279 3f4w_A Putative hexulose 6 pho 97.7 2.7E-05 9.1E-10 79.8 6.2 172 87-269 2-193 (211)
280 4adt_A Pyridoxine biosynthetic 97.7 4E-05 1.4E-09 81.9 7.5 127 132-269 70-244 (297)
281 1nsj_A PRAI, phosphoribosyl an 97.7 0.00024 8.3E-09 71.9 12.5 156 103-267 13-184 (205)
282 3q5d_A Atlastin-1; G protein, 97.7 7E-05 2.4E-09 84.9 9.2 24 364-387 67-90 (447)
283 1j8m_F SRP54, signal recogniti 97.7 0.0001 3.4E-09 79.6 9.3 68 436-506 182-254 (297)
284 2h6r_A Triosephosphate isomera 97.6 3.1E-05 1.1E-09 79.7 4.8 115 151-269 75-205 (219)
285 2b7n_A Probable nicotinate-nuc 97.6 2.8E-05 9.5E-10 82.6 4.2 83 170-265 171-259 (273)
286 1v5x_A PRA isomerase, phosphor 97.6 0.00049 1.7E-08 69.5 12.6 154 103-267 12-178 (203)
287 1puj_A YLQF, conserved hypothe 97.6 0.00017 5.7E-09 77.3 9.6 87 440-540 4-90 (282)
288 3lab_A Putative KDPG (2-keto-3 97.6 0.00019 6.4E-09 72.7 9.3 156 99-266 25-190 (217)
289 2jbm_A Nicotinate-nucleotide p 97.5 5.4E-05 1.9E-09 81.3 4.5 83 170-265 186-274 (299)
290 3jr2_A Hexulose-6-phosphate sy 97.5 4.1E-05 1.4E-09 78.8 3.4 170 87-269 8-200 (218)
291 2yv5_A YJEQ protein; hydrolase 97.5 0.00024 8.3E-09 76.9 9.1 81 454-540 71-153 (302)
292 2xxa_A Signal recognition part 97.4 0.00052 1.8E-08 77.9 11.6 131 363-506 99-255 (433)
293 1qap_A Quinolinic acid phospho 97.4 0.00016 5.3E-09 77.4 6.5 80 171-264 199-281 (296)
294 1jcn_A Inosine monophosphate d 97.4 0.0004 1.4E-08 81.0 10.6 111 150-268 259-392 (514)
295 3c2e_A Nicotinate-nucleotide p 97.4 7.8E-05 2.7E-09 79.8 4.1 85 170-266 188-280 (294)
296 3h2y_A GTPase family protein; 97.3 0.00035 1.2E-08 77.8 8.5 100 450-581 57-158 (368)
297 3ec1_A YQEH GTPase; atnos1, at 97.3 0.00025 8.6E-09 79.0 7.3 102 450-581 59-160 (369)
298 1azs_C GS-alpha; complex (lyas 97.3 0.00024 8.1E-09 79.5 6.7 65 436-504 218-297 (402)
299 2xtz_A Guanine nucleotide-bind 97.2 0.00019 6.4E-09 79.3 4.9 65 436-504 184-263 (354)
300 1qop_A Tryptophan synthase alp 97.2 0.0011 3.7E-08 70.4 10.7 166 99-269 31-240 (268)
301 2gou_A Oxidoreductase, FMN-bin 97.2 0.00029 9.8E-09 78.2 5.9 75 201-278 256-335 (365)
302 4ido_A Atlastin-1; GTPase, GTP 97.1 0.079 2.7E-06 59.7 24.8 22 364-385 67-88 (457)
303 1vyr_A Pentaerythritol tetrani 97.1 0.00034 1.2E-08 77.6 5.5 75 201-278 257-336 (364)
304 3nav_A Tryptophan synthase alp 97.1 0.00088 3E-08 70.7 8.3 175 87-269 23-243 (271)
305 2ekc_A AQ_1548, tryptophan syn 97.1 0.0028 9.6E-08 66.9 12.0 173 92-270 24-241 (262)
306 3e70_C DPA, signal recognition 97.0 0.0021 7.2E-08 70.1 10.5 67 436-506 213-283 (328)
307 1vma_A Cell division protein F 97.0 0.0019 6.4E-08 69.8 9.8 69 436-506 188-264 (306)
308 3o07_A Pyridoxine biosynthesis 97.0 0.0002 6.7E-09 74.1 1.6 86 191-277 118-243 (291)
309 3vnd_A TSA, tryptophan synthas 97.0 0.0016 5.4E-08 68.7 8.6 174 88-269 22-241 (267)
310 1zu4_A FTSY; GTPase, signal re 97.0 0.0049 1.7E-07 67.0 12.8 70 435-506 192-269 (320)
311 3r2g_A Inosine 5'-monophosphat 97.0 0.0013 4.3E-08 72.3 8.0 110 150-268 104-233 (361)
312 4avf_A Inosine-5'-monophosphat 96.9 0.0019 6.4E-08 74.6 9.5 108 153-268 236-366 (490)
313 3l82_B F-box only protein 4; T 96.9 0.0031 1.1E-07 63.4 9.5 115 436-582 97-222 (227)
314 1rj9_A FTSY, signal recognitio 96.9 0.0032 1.1E-07 68.0 10.5 69 436-506 186-262 (304)
315 1eep_A Inosine 5'-monophosphat 96.9 0.002 7E-08 72.6 9.2 75 193-268 200-290 (404)
316 3cnl_A YLQF, putative uncharac 96.9 0.0004 1.4E-08 73.4 3.2 73 454-540 13-85 (262)
317 1i4n_A Indole-3-glycerol phosp 96.8 0.0034 1.2E-07 65.3 9.8 114 151-269 116-236 (251)
318 3cwo_X Beta/alpha-barrel prote 96.8 0.0023 7.7E-08 65.9 8.4 169 87-269 4-209 (237)
319 1qpo_A Quinolinate acid phosph 96.8 0.0013 4.3E-08 69.9 6.2 84 170-264 184-270 (284)
320 3tqv_A Nicotinate-nucleotide p 96.8 0.0015 5.3E-08 68.8 6.7 78 171-262 189-269 (287)
321 2px0_A Flagellar biosynthesis 96.8 0.0057 1.9E-07 65.8 11.2 68 436-506 184-254 (296)
322 2yhs_A FTSY, cell division pro 96.8 0.004 1.4E-07 71.0 10.3 69 436-506 377-453 (503)
323 1jvn_A Glutamine, bifunctional 96.7 0.0015 5.1E-08 76.6 6.9 163 100-269 281-532 (555)
324 2ffh_A Protein (FFH); SRP54, s 96.7 0.0054 1.8E-07 69.1 10.8 69 436-506 182-252 (425)
325 1ujp_A Tryptophan synthase alp 96.6 0.016 5.5E-07 61.2 13.3 160 99-270 30-236 (271)
326 1ls1_A Signal recognition part 96.6 0.0064 2.2E-07 65.4 10.4 69 436-506 182-252 (295)
327 4dzz_A Plasmid partitioning pr 96.6 0.0028 9.5E-08 63.9 7.0 62 436-504 77-143 (206)
328 3ffs_A Inosine-5-monophosphate 96.6 0.0058 2E-07 68.0 10.0 114 149-268 147-280 (400)
329 1t9h_A YLOQ, probable GTPase E 96.5 0.0018 6.2E-08 69.8 5.4 83 450-540 74-161 (307)
330 1t9h_A YLOQ, probable GTPase E 96.5 0.001 3.5E-08 71.8 2.6 26 364-389 173-198 (307)
331 2rcn_A Probable GTPase ENGC; Y 96.3 0.0026 9E-08 69.9 5.1 25 365-389 216-240 (358)
332 3usb_A Inosine-5'-monophosphat 96.2 0.0073 2.5E-07 70.0 8.3 107 153-267 263-392 (511)
333 4fxs_A Inosine-5'-monophosphat 96.2 0.0067 2.3E-07 70.0 7.8 107 154-268 239-368 (496)
334 3paj_A Nicotinate-nucleotide p 96.2 0.0043 1.5E-07 66.3 5.5 78 171-262 222-302 (320)
335 2yv5_A YJEQ protein; hydrolase 96.0 0.0099 3.4E-07 64.1 7.8 24 364-388 165-188 (302)
336 2r14_A Morphinone reductase; H 95.9 0.0039 1.3E-07 69.3 4.0 75 201-278 261-341 (377)
337 1u0l_A Probable GTPase ENGC; p 95.9 0.0078 2.7E-07 64.9 6.0 25 365-389 170-194 (301)
338 3cwq_A Para family chromosome 95.8 0.0079 2.7E-07 61.1 5.5 64 436-505 69-134 (209)
339 3gnn_A Nicotinate-nucleotide p 95.8 0.0078 2.7E-07 63.8 5.4 79 171-263 200-281 (298)
340 3la6_A Tyrosine-protein kinase 95.7 0.033 1.1E-06 59.5 10.2 65 436-505 203-268 (286)
341 3cio_A ETK, tyrosine-protein k 95.7 0.037 1.3E-06 59.4 10.6 64 436-504 215-279 (299)
342 3end_A Light-independent proto 95.7 0.012 4.1E-07 63.4 6.7 64 435-503 157-225 (307)
343 2j69_A Bacterial dynamin-like 95.6 5.7 0.0002 47.5 31.6 26 889-914 662-691 (695)
344 1vrd_A Inosine-5'-monophosphat 95.5 0.041 1.4E-06 63.6 10.7 74 193-267 284-373 (494)
345 1wv2_A Thiazole moeity, thiazo 95.4 0.018 6.3E-07 59.1 6.2 155 102-269 32-222 (265)
346 2og2_A Putative signal recogni 95.3 0.12 4E-06 56.9 12.9 69 436-506 242-318 (359)
347 2rcn_A Probable GTPase ENGC; Y 95.3 0.048 1.6E-06 59.9 9.6 77 458-540 126-203 (358)
348 1ypf_A GMP reductase; GUAC, pu 95.3 0.018 6.1E-07 63.1 6.2 77 191-268 153-244 (336)
349 3exr_A RMPD (hexulose-6-phosph 95.3 0.012 4E-07 60.4 4.3 170 87-269 7-202 (221)
350 3l0g_A Nicotinate-nucleotide p 95.2 0.024 8.2E-07 59.8 6.7 78 171-262 198-278 (300)
351 2qr6_A IMP dehydrogenase/GMP r 95.2 0.076 2.6E-06 59.4 11.1 79 190-269 214-312 (393)
352 3hgj_A Chromate reductase; TIM 95.2 0.07 2.4E-06 58.6 10.5 68 201-269 245-324 (349)
353 4a29_A Engineered retro-aldol 95.2 0.024 8.1E-07 58.4 6.1 109 151-269 119-239 (258)
354 1pii_A N-(5'phosphoribosyl)ant 95.1 0.015 5.2E-07 65.6 5.1 121 152-278 124-252 (452)
355 3kjh_A CO dehydrogenase/acetyl 95.1 0.0046 1.6E-07 64.3 0.8 62 435-502 132-194 (254)
356 1q6o_A Humps, 3-keto-L-gulonat 95.0 0.021 7.3E-07 58.2 5.5 170 87-269 5-197 (216)
357 1gox_A (S)-2-hydroxy-acid oxid 94.8 0.024 8.2E-07 62.9 5.5 73 194-267 232-313 (370)
358 3k9g_A PF-32 protein; ssgcid, 94.5 0.1 3.6E-06 54.7 9.5 63 435-503 145-209 (267)
359 3tha_A Tryptophan synthase alp 94.3 0.035 1.2E-06 57.6 4.9 176 87-270 17-234 (252)
360 1ep3_A Dihydroorotate dehydrog 94.2 0.032 1.1E-06 60.3 4.6 74 195-269 175-276 (311)
361 2nli_A Lactate oxidase; flavoe 94.1 0.048 1.6E-06 60.3 5.8 70 195-265 237-315 (368)
362 1ye8_A Protein THEP1, hypothet 94.1 0.022 7.5E-07 56.2 2.7 23 365-387 1-23 (178)
363 1lvg_A Guanylate kinase, GMP k 93.9 0.019 6.6E-07 57.6 2.2 24 364-387 4-27 (198)
364 3c8u_A Fructokinase; YP_612366 93.9 0.033 1.1E-06 56.3 3.9 26 362-387 20-45 (208)
365 1zp6_A Hypothetical protein AT 93.9 0.04 1.4E-06 54.5 4.3 27 361-387 6-32 (191)
366 3sgz_A Hydroxyacid oxidase 2; 93.9 0.055 1.9E-06 59.0 5.6 72 195-267 225-305 (352)
367 2c6q_A GMP reductase 2; TIM ba 93.8 0.062 2.1E-06 59.0 6.1 77 191-268 165-257 (351)
368 1vhn_A Putative flavin oxidore 93.8 0.052 1.8E-06 58.9 5.4 68 199-269 144-219 (318)
369 3tdn_A FLR symmetric alpha-bet 93.8 0.037 1.3E-06 57.7 4.1 69 199-268 39-113 (247)
370 3b0p_A TRNA-dihydrouridine syn 93.7 0.038 1.3E-06 60.7 4.1 69 199-269 148-231 (350)
371 3ney_A 55 kDa erythrocyte memb 93.7 0.026 8.8E-07 56.6 2.4 25 364-388 19-43 (197)
372 1kgd_A CASK, peripheral plasma 93.7 0.029 9.8E-07 55.3 2.7 23 365-387 6-28 (180)
373 3tqc_A Pantothenate kinase; bi 93.6 0.056 1.9E-06 58.5 5.2 27 361-387 89-115 (321)
374 2oze_A ORF delta'; para, walke 93.5 0.064 2.2E-06 57.4 5.4 63 436-504 156-225 (298)
375 1znw_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 55.9 3.0 28 361-388 17-44 (207)
376 3tr0_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 55.1 3.1 25 363-387 6-30 (205)
377 1vcf_A Isopentenyl-diphosphate 93.2 0.14 4.8E-06 55.8 7.6 71 196-267 193-289 (332)
378 3tif_A Uncharacterized ABC tra 93.1 0.045 1.5E-06 56.6 3.2 26 363-388 30-55 (235)
379 1p4c_A L(+)-mandelate dehydrog 93.1 0.064 2.2E-06 59.6 4.7 72 195-267 233-311 (380)
380 3l2o_B F-box only protein 4; s 93.0 0.12 4.2E-06 54.4 6.4 114 437-582 183-307 (312)
381 1z41_A YQJM, probable NADH-dep 93.0 0.048 1.6E-06 59.7 3.4 75 201-278 235-320 (338)
382 1z6g_A Guanylate kinase; struc 92.9 0.039 1.3E-06 56.3 2.5 26 363-388 22-47 (218)
383 2pcj_A ABC transporter, lipopr 92.9 0.05 1.7E-06 55.8 3.3 25 364-388 30-54 (224)
384 1s96_A Guanylate kinase, GMP k 92.9 0.047 1.6E-06 55.8 3.0 28 361-388 13-40 (219)
385 3asz_A Uridine kinase; cytidin 92.8 0.053 1.8E-06 54.7 3.3 25 363-387 5-29 (211)
386 2nzl_A Hydroxyacid oxidase 1; 92.8 0.092 3.2E-06 58.5 5.4 71 196-267 261-340 (392)
387 3a00_A Guanylate kinase, GMP k 92.8 0.04 1.4E-06 54.6 2.2 23 366-388 3-25 (186)
388 4af0_A Inosine-5'-monophosphat 92.6 0.66 2.3E-05 52.8 12.0 72 190-262 325-412 (556)
389 1htw_A HI0065; nucleotide-bind 92.5 0.067 2.3E-06 51.6 3.4 28 361-388 30-57 (158)
390 2htm_A Thiazole biosynthesis p 92.5 0.1 3.5E-06 53.8 4.9 73 194-269 131-213 (268)
391 2onk_A Molybdate/tungstate ABC 92.5 0.064 2.2E-06 55.6 3.4 24 365-388 25-48 (240)
392 2cbz_A Multidrug resistance-as 92.5 0.06 2.1E-06 55.7 3.2 26 363-388 30-55 (237)
393 3gfo_A Cobalt import ATP-bindi 92.4 0.062 2.1E-06 56.9 3.2 25 364-388 34-58 (275)
394 4g1u_C Hemin import ATP-bindin 92.3 0.063 2.2E-06 56.6 3.2 26 363-388 36-61 (266)
395 2j41_A Guanylate kinase; GMP, 92.3 0.065 2.2E-06 53.6 3.2 27 362-388 4-30 (207)
396 2eyu_A Twitching motility prot 92.3 0.057 1.9E-06 56.8 2.8 26 362-387 23-48 (261)
397 1g6h_A High-affinity branched- 92.3 0.065 2.2E-06 56.2 3.2 26 363-388 32-57 (257)
398 2ff7_A Alpha-hemolysin translo 92.3 0.066 2.3E-06 55.8 3.2 25 364-388 35-59 (247)
399 1b0u_A Histidine permease; ABC 92.3 0.065 2.2E-06 56.3 3.2 26 363-388 31-56 (262)
400 2pze_A Cystic fibrosis transme 92.3 0.067 2.3E-06 55.0 3.2 25 364-388 34-58 (229)
401 4gp7_A Metallophosphoesterase; 92.2 0.063 2.1E-06 52.4 2.8 24 363-386 8-31 (171)
402 1sgw_A Putative ABC transporte 92.2 0.066 2.3E-06 54.5 3.0 24 365-388 36-59 (214)
403 3tau_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 53.8 3.2 26 363-388 7-32 (208)
404 1kbi_A Cytochrome B2, L-LCR; f 92.1 0.12 4.3E-06 59.5 5.6 71 196-267 352-436 (511)
405 2d2e_A SUFC protein; ABC-ATPas 92.1 0.076 2.6E-06 55.4 3.5 24 364-387 29-52 (250)
406 1zfj_A Inosine monophosphate d 92.1 0.28 9.6E-06 56.5 8.6 112 149-268 236-370 (491)
407 1vpl_A ABC transporter, ATP-bi 92.1 0.073 2.5E-06 55.7 3.2 26 363-388 40-65 (256)
408 1ji0_A ABC transporter; ATP bi 92.0 0.074 2.5E-06 55.1 3.2 25 364-388 32-56 (240)
409 2olj_A Amino acid ABC transpor 92.0 0.074 2.5E-06 55.9 3.2 26 363-388 49-74 (263)
410 1ex7_A Guanylate kinase; subst 92.0 0.049 1.7E-06 54.1 1.7 34 367-400 4-39 (186)
411 3vk5_A MOEO5; TIM barrel, tran 92.0 0.17 5.7E-06 52.9 5.7 187 88-278 41-271 (286)
412 3gr7_A NADPH dehydrogenase; fl 92.0 0.083 2.8E-06 57.8 3.7 68 201-269 235-313 (340)
413 2ghi_A Transport protein; mult 92.0 0.076 2.6E-06 55.8 3.2 25 363-387 45-69 (260)
414 1mv5_A LMRA, multidrug resista 92.0 0.082 2.8E-06 54.9 3.5 26 363-388 27-52 (243)
415 2zu0_C Probable ATP-dependent 92.0 0.08 2.7E-06 55.8 3.4 25 363-387 45-69 (267)
416 2qi9_C Vitamin B12 import ATP- 91.9 0.077 2.6E-06 55.3 3.2 25 364-388 26-50 (249)
417 2v9p_A Replication protein E1; 91.8 0.1 3.5E-06 56.0 4.1 28 360-387 122-149 (305)
418 2ixe_A Antigen peptide transpo 91.8 0.082 2.8E-06 55.9 3.2 26 363-388 44-69 (271)
419 2ihy_A ABC transporter, ATP-bi 91.7 0.084 2.9E-06 56.0 3.2 26 363-388 46-71 (279)
420 1p0k_A Isopentenyl-diphosphate 91.7 0.093 3.2E-06 57.6 3.7 72 196-268 190-285 (349)
421 3b85_A Phosphate starvation-in 91.6 0.063 2.1E-06 54.4 2.1 24 364-387 22-45 (208)
422 2qt1_A Nicotinamide riboside k 91.6 0.12 4.2E-06 51.8 4.2 28 360-387 17-44 (207)
423 3aez_A Pantothenate kinase; tr 91.6 0.093 3.2E-06 56.7 3.5 27 361-387 87-113 (312)
424 2yz2_A Putative ABC transporte 91.6 0.088 3E-06 55.4 3.2 26 363-388 32-57 (266)
425 2nq2_C Hypothetical ABC transp 91.6 0.088 3E-06 55.0 3.2 25 364-388 31-55 (253)
426 1cp2_A CP2, nitrogenase iron p 91.5 0.77 2.6E-05 47.8 10.6 66 436-504 117-187 (269)
427 2qor_A Guanylate kinase; phosp 91.5 0.093 3.2E-06 52.7 3.3 27 361-387 9-35 (204)
428 2jeo_A Uridine-cytidine kinase 91.5 0.094 3.2E-06 54.4 3.4 27 361-387 22-48 (245)
429 1ps9_A 2,4-dienoyl-COA reducta 91.4 0.09 3.1E-06 63.2 3.5 75 201-278 234-323 (671)
430 1kag_A SKI, shikimate kinase I 91.4 0.077 2.6E-06 51.5 2.4 24 364-387 4-27 (173)
431 3nh6_A ATP-binding cassette SU 91.4 0.067 2.3E-06 57.6 2.0 26 363-388 79-104 (306)
432 1np6_A Molybdopterin-guanine d 91.3 0.095 3.3E-06 51.4 3.0 25 363-387 5-29 (174)
433 4eun_A Thermoresistant glucoki 91.3 0.093 3.2E-06 52.5 3.0 25 363-387 28-52 (200)
434 2afh_E Nitrogenase iron protei 91.3 0.32 1.1E-05 51.5 7.4 65 436-503 120-189 (289)
435 2bbw_A Adenylate kinase 4, AK4 91.2 0.12 4E-06 53.6 3.7 26 363-388 26-54 (246)
436 2f1r_A Molybdopterin-guanine d 91.1 0.056 1.9E-06 52.9 1.0 23 365-387 3-25 (171)
437 3lw7_A Adenylate kinase relate 91.1 0.11 3.8E-06 50.0 3.2 20 365-384 2-21 (179)
438 3jvv_A Twitching mobility prot 91.0 0.092 3.1E-06 57.8 2.7 23 365-387 124-146 (356)
439 3uie_A Adenylyl-sulfate kinase 91.0 0.15 5.2E-06 50.9 4.1 26 362-387 23-48 (200)
440 2pjz_A Hypothetical protein ST 91.0 0.11 3.8E-06 54.6 3.2 25 364-388 30-54 (263)
441 2gza_A Type IV secretion syste 90.9 0.11 3.7E-06 57.4 3.2 25 363-387 174-198 (361)
442 2bdt_A BH3686; alpha-beta prot 90.9 0.1 3.5E-06 51.5 2.8 22 365-386 3-24 (189)
443 1cke_A CK, MSSA, protein (cyti 90.8 0.11 3.9E-06 52.7 3.2 24 364-387 5-28 (227)
444 1rz3_A Hypothetical protein rb 90.8 0.23 7.8E-06 49.7 5.3 25 362-386 20-44 (201)
445 3lnc_A Guanylate kinase, GMP k 90.8 0.077 2.6E-06 54.4 1.8 25 363-387 26-51 (231)
446 2agk_A 1-(5-phosphoribosyl)-5- 90.8 0.15 5.2E-06 53.4 4.1 153 100-266 39-239 (260)
447 2bbs_A Cystic fibrosis transme 90.8 0.12 4.1E-06 55.1 3.3 26 363-388 63-88 (290)
448 3gka_A N-ethylmaleimide reduct 90.7 0.15 5.2E-06 56.0 4.1 61 206-269 260-322 (361)
449 1sq5_A Pantothenate kinase; P- 90.6 0.38 1.3E-05 51.7 7.2 26 362-387 78-103 (308)
450 3ug7_A Arsenical pump-driving 90.6 3.5 0.00012 44.9 15.0 42 463-504 237-279 (349)
451 3tui_C Methionine import ATP-b 90.5 0.13 4.5E-06 56.5 3.4 26 363-388 53-78 (366)
452 4gj1_A 1-(5-phosphoribosyl)-5- 90.4 0.68 2.3E-05 47.8 8.7 157 100-266 32-227 (243)
453 1jjv_A Dephospho-COA kinase; P 90.4 0.16 5.4E-06 50.9 3.7 22 365-386 3-24 (206)
454 2pt7_A CAG-ALFA; ATPase, prote 90.4 0.11 3.6E-06 56.7 2.5 23 365-387 172-194 (330)
455 2rhm_A Putative kinase; P-loop 90.4 0.17 5.9E-06 49.8 3.9 25 362-386 3-27 (193)
456 3fvq_A Fe(3+) IONS import ATP- 90.3 0.15 5E-06 56.0 3.6 26 363-388 29-54 (359)
457 2i3b_A HCR-ntpase, human cance 90.3 0.1 3.5E-06 51.9 2.1 22 366-387 3-24 (189)
458 1ly1_A Polynucleotide kinase; 90.2 0.17 5.6E-06 49.2 3.6 23 364-386 2-24 (181)
459 1knq_A Gluconate kinase; ALFA/ 90.2 0.15 5.2E-06 49.5 3.3 23 364-386 8-30 (175)
460 4ab4_A Xenobiotic reductase B; 90.2 0.18 6E-06 55.5 4.1 68 206-278 252-321 (362)
461 4a74_A DNA repair and recombin 90.1 0.21 7.1E-06 50.7 4.4 29 361-389 22-50 (231)
462 1tv5_A Dhodehase, dihydroorota 90.0 0.21 7.2E-06 56.3 4.5 66 201-267 317-406 (443)
463 1odf_A YGR205W, hypothetical 3 89.9 0.23 7.8E-06 53.0 4.6 27 361-387 28-54 (290)
464 1z47_A CYSA, putative ABC-tran 89.8 0.16 5.6E-06 55.6 3.5 25 364-388 41-65 (355)
465 1p9r_A General secretion pathw 89.8 0.13 4.5E-06 57.8 2.7 24 364-387 167-190 (418)
466 3bfv_A CAPA1, CAPB2, membrane 89.8 0.31 1.1E-05 51.3 5.6 64 436-504 193-257 (271)
467 3rlf_A Maltose/maltodextrin im 89.7 0.17 5.7E-06 56.0 3.4 26 363-388 28-53 (381)
468 1f76_A Dihydroorotate dehydrog 89.7 0.22 7.5E-06 54.3 4.4 67 201-268 231-323 (336)
469 3kb2_A SPBC2 prophage-derived 89.7 0.17 5.8E-06 48.7 3.1 22 365-386 2-23 (173)
470 2if2_A Dephospho-COA kinase; a 89.6 0.15 5.2E-06 50.9 2.8 22 365-386 2-23 (204)
471 2oap_1 GSPE-2, type II secreti 89.6 0.14 4.9E-06 59.1 2.9 24 364-387 260-283 (511)
472 1bif_A 6-phosphofructo-2-kinas 89.5 0.13 4.5E-06 58.9 2.5 25 363-387 38-62 (469)
473 2yyz_A Sugar ABC transporter, 89.5 0.18 6.2E-06 55.4 3.5 26 363-388 28-53 (359)
474 3zq6_A Putative arsenical pump 89.5 3 0.0001 44.9 13.2 42 463-504 222-264 (324)
475 3l5l_A Xenobiotic reductase A; 89.4 0.15 5.2E-06 56.2 2.8 68 201-269 252-331 (363)
476 2kjq_A DNAA-related protein; s 89.4 0.17 5.8E-06 48.2 2.8 24 364-387 36-59 (149)
477 2it1_A 362AA long hypothetical 89.4 0.18 6.3E-06 55.4 3.4 26 363-388 28-53 (362)
478 2ewv_A Twitching motility prot 89.4 0.18 6.1E-06 55.9 3.3 25 363-387 135-159 (372)
479 2v54_A DTMP kinase, thymidylat 89.3 0.22 7.4E-06 49.6 3.7 25 363-387 3-27 (204)
480 1vht_A Dephospho-COA kinase; s 89.3 0.22 7.4E-06 50.4 3.7 24 363-386 3-26 (218)
481 1nij_A Hypothetical protein YJ 89.3 0.14 4.9E-06 55.3 2.5 26 363-388 3-28 (318)
482 4e22_A Cytidylate kinase; P-lo 89.3 0.22 7.6E-06 51.8 3.8 23 363-385 26-48 (252)
483 1g29_1 MALK, maltose transport 89.2 0.19 6.6E-06 55.5 3.5 25 364-388 29-53 (372)
484 3zen_D Fatty acid synthase; tr 89.1 1.2 4.1E-05 61.5 11.7 160 103-268 443-651 (3089)
485 3zvl_A Bifunctional polynucleo 89.1 0.97 3.3E-05 50.7 9.2 25 363-387 257-281 (416)
486 1v43_A Sugar-binding transport 89.0 0.2 6.9E-06 55.3 3.4 26 363-388 36-61 (372)
487 1qhx_A CPT, protein (chloramph 89.0 0.21 7.3E-06 48.5 3.3 24 364-387 3-26 (178)
488 3zwt_A Dihydroorotate dehydrog 89.0 0.3 1E-05 53.8 4.8 66 201-267 240-331 (367)
489 3t61_A Gluconokinase; PSI-biol 88.9 0.19 6.3E-06 50.2 2.8 23 364-386 18-40 (202)
490 3cm0_A Adenylate kinase; ATP-b 88.9 0.21 7.3E-06 48.9 3.2 24 363-386 3-26 (186)
491 1uf9_A TT1252 protein; P-loop, 88.8 0.26 8.9E-06 48.9 3.8 25 363-387 7-31 (203)
492 2yvu_A Probable adenylyl-sulfa 88.8 0.26 8.9E-06 48.4 3.8 26 362-387 11-36 (186)
493 2v4h_A NF-kappa-B essential mo 88.7 6.4 0.00022 34.5 11.8 49 871-919 62-110 (110)
494 3vaa_A Shikimate kinase, SK; s 88.7 0.25 8.4E-06 49.3 3.6 24 363-386 24-47 (199)
495 2jaq_A Deoxyguanosine kinase; 88.7 0.22 7.4E-06 49.5 3.2 22 365-386 1-22 (205)
496 1me8_A Inosine-5'-monophosphat 88.7 0.44 1.5E-05 54.9 6.2 76 190-266 287-384 (503)
497 1jub_A Dihydroorotate dehydrog 88.7 0.17 5.8E-06 54.5 2.5 41 228-268 233-276 (311)
498 2ehv_A Hypothetical protein PH 88.6 0.23 7.7E-06 51.1 3.3 24 363-386 29-52 (251)
499 1nn5_A Similar to deoxythymidy 88.6 0.26 9E-06 49.4 3.7 24 363-386 8-31 (215)
500 3gd7_A Fusion complex of cysti 88.6 0.23 8E-06 55.2 3.6 26 363-388 46-71 (390)
No 1
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.7e-34 Score=297.27 Aligned_cols=177 Identities=23% Similarity=0.255 Sum_probs=157.9
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC---------CCHHHHHHHHHHHHHHhhc-CceEEecCcHHHH
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE---------ASGKSVYEAACLLKSVVKD-RALFLIAERVDIA 154 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~---------~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla 154 (921)
.+++|+|||+.....++++.+++++++|+++||||+|+ ++..+++++|++++++|+. +++|||||++|+|
T Consensus 29 ~~~lylIt~~~~~~~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA 108 (243)
T 3o63_A 29 SARLYLCTDARRERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIA 108 (243)
T ss_dssp HCCEEEEECCCTTTCCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred CCcEEEEECCCcccchHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHH
Confidence 34999999987655689999999999999999999999 6799999999999999999 9999999999999
Q ss_pred HhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-
Q 002437 155 AAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI- 226 (921)
Q Consensus 155 ~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~- 226 (921)
.++|||||||++.|++...+|++++ ++ . ++|+||||.+|+.+| ...|+|||++||| ||+. .|++
T Consensus 109 ~~~gAdGVHLg~~dl~~~~~r~~~~---~~-~---~iG~S~ht~~Ea~~A-~~~GaDyI~vgpvf~T~tK~~~~~~gl~~ 180 (243)
T 3o63_A 109 RAAGADVLHLGQRDLPVNVARQILA---PD-T---LIGRSTHDPDQVAAA-AAGDADYFCVGPCWPTPTKPGRAAPGLGL 180 (243)
T ss_dssp HHHTCSEEEECTTSSCHHHHHHHSC---TT-C---EEEEEECSHHHHHHH-HHSSCSEEEECCSSCCCC-----CCCHHH
T ss_pred HHhCCCEEEecCCcCCHHHHHHhhC---CC-C---EEEEeCCCHHHHHHH-hhCCCCEEEEcCccCCCCCCCcchhhHHH
Confidence 9999999999999999999999987 66 3 799999999999999 7999999999998 4442 3454
Q ss_pred hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..++++. .++||||+|||+++|+.+++++||+||||+++.++.
T Consensus 181 l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 181 VRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp HHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred HHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 5777776 589999999999999999999999999999888764
No 2
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.97 E-value=6.7e-29 Score=300.43 Aligned_cols=293 Identities=23% Similarity=0.305 Sum_probs=228.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcc------------------------
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRC------------------------ 417 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~------------------------ 417 (921)
...++|+|+|.+|+|||||+|+|+|.+++|++..|+|.+++.+.++.....+....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 46899999999999999999999999999999999999988888875432111000
Q ss_pred ---------cccCCCeEEeecCCCcc-cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-H
Q 002437 418 ---------ERHPDGQYICYLPSPIL-KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-Y 486 (921)
Q Consensus 418 ---------~~~~~g~~~~~~p~~~l-~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~ 486 (921)
.......+.+++|++++ .+++||||||+++.. .+...+..++..+|++|||+|++++.+..+..++. .
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-ARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-hHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 00011234567888877 489999999987543 24567888999999999999999999999988775 5
Q ss_pred hhhcCCeEEEEEeCCCCCCCh----H---HHHHHHHHHH----HHHHHhhC-----CCCCeEEEecccchHHhhcccccc
Q 002437 487 TQQWKKKVVFVLNKSDLYQNA----F---ELEEAISFVK----ENTMKLLN-----IENVTIYPVSARSTLEAKLSVSSA 550 (921)
Q Consensus 487 l~~~~~~vivVlNK~D~~~~~----~---~~~~v~~~~~----~~~~~~~~-----~~~~~v~~vSA~~~l~a~~~~~~~ 550 (921)
+...+.|+++|+||+|+.... + +++.+.+.+. ..+....+ ....++|+|||+.++.++....
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~-- 303 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP-- 303 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT--
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc--
Confidence 666788999999999986432 1 2333333333 33333332 2345899999999988876544
Q ss_pred cccCcccccccCccccccchHHHHHHHHHhhccCCccchHHHHHhhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002437 551 VGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANE 630 (921)
Q Consensus 551 ~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 630 (921)
+..+..+||++|++.+.+++. .++.+.++.++...+..++..+...+......+..+....+.
T Consensus 304 -----------~~~~~~~Gi~~L~~~L~~~l~------~~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~ 366 (695)
T 2j69_A 304 -----------QADLDGTGFPKFMDSLNTFLT------RERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKK 366 (695)
T ss_dssp -----------TCCCTTSSHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHH
T ss_pred -----------hhhhhccCHHHHHHHHHHHHH------HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 245667899999999999998 677788888888888999999888888888777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002437 631 MIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTLQI 674 (921)
Q Consensus 631 ~~~~l~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~ 674 (921)
..++++...++++.....+++.+.+..++....+...+.+.++.
T Consensus 367 ~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~ 410 (695)
T 2j69_A 367 RIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLN 410 (695)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889998889999999999999999999999888766
No 3
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=99.97 E-value=3e-30 Score=299.83 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=156.1
Q ss_pred CceEEEEcCCCCCC--CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCe
Q 002437 85 NVVLQLEPHQVLAG--GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASG 161 (921)
Q Consensus 85 ~~~lylit~~~~~~--~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~G 161 (921)
+++||+|||+.... .++++.+++++++|+++||||+|+.+..++++++++++++|+. +++||||||+|+|.++||||
T Consensus 9 ~~~lYlITd~~~~~~~~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~dlA~~~gAdG 88 (540)
T 3nl6_A 9 DYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADG 88 (540)
T ss_dssp CCSEEEEC-CTTCCTTCCHHHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCSHHHHHTTCSE
T ss_pred CCCEEEEECchhccCcchHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcHHHHHHcCCCE
Confidence 45799999987543 3899999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCC---CCEEEeCCC----CCCCC-----Ccc-hh
Q 002437 162 VLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEG---ADFLVCCFG----EGQKA-----DVI-EN 228 (921)
Q Consensus 162 vHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~g---aDyv~~gpv----Tk~~~-----g~~-~~ 228 (921)
|||||+|++...+|+++| |+ + +||+|||+.+|+.+| .+.| +|||++||| ||+.. |+. .+
T Consensus 89 VHLgq~dl~~~~ar~~lg---~~-~---iiG~S~ht~eea~~A-~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~ 160 (540)
T 3nl6_A 89 IHVGQDDMPIPMIRKLVG---PD-M---VIGWSVGFPEEVDEL-SKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAI 160 (540)
T ss_dssp EEECTTSSCHHHHHHHHC---TT-S---EEEEEECSHHHHHHH-HHTCC--CCEEEESCCSCCCCCC----CCCHHHHHH
T ss_pred EEEChhhcCHHHHHHHhC---CC-C---EEEEECCCHHHHHHH-HHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHH
Confidence 999999999999999987 66 3 799999999999999 8999 999999999 45432 233 34
Q ss_pred hhhhc------CCCCEEEEcCCCccChHHHHH--------cCCcEEEEeeccccc
Q 002437 229 SLFTN------VKIPIFIMNASPLVDVSKFLK--------SGASGFVISLEDLSL 269 (921)
Q Consensus 229 ~~~~~------~~~Pv~aiGGi~~~~~~~~~~--------~Ga~gva~~~a~~~~ 269 (921)
++++. .++||||||||+++|+.++++ +|++||||+++.+..
T Consensus 161 ~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a 215 (540)
T 3nl6_A 161 RVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIAS 215 (540)
T ss_dssp HHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTC
T ss_pred HHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcC
Confidence 44443 589999999999999999998 899999999998864
No 4
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.94 E-value=6.9e-27 Score=241.93 Aligned_cols=165 Identities=10% Similarity=0.029 Sum_probs=137.2
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++|+|||+..+.+. .+.+++++++|+++||||.|+.+..++.+. +.++|+. ++.++|||++++|.++|+|||||
T Consensus 1 m~ly~It~~~~~~~~-~~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~---i~~l~~~~~~~livnd~~~~A~~~gadgvhl 76 (210)
T 3ceu_A 1 MKLIVVTTPTFFVEE-DKIITALFEEGLDILHLRKPETPAMYSERL---LTLIPEKYHRRIVTHEHFYLKEEFNLMGIHL 76 (210)
T ss_dssp CEEEEECCSSCCTTH-HHHHHHHHHTTCCEEEECCSSCCHHHHHHH---HHHSCGGGGGGEEESSCTTHHHHTTCSEEEC
T ss_pred CeEEEEeCcccccCH-HHHHHHHHHCCCCEEEEccCCCCHHHHHHH---HHHHHHHhCCeEEEeCCHHHHHHcCCCEEEE
Confidence 479999998765544 589999999999999999999998877664 5677877 89999999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhhhc--
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLFTN-- 233 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~~~-- 233 (921)
++.+++...+| + . ++|.||||.+|+..| . .||||+++||+ | |+. .|+. .+++++.
T Consensus 77 ~~~~~~~~~~~--------~-~---~ig~s~~t~~e~~~A-~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~ 142 (210)
T 3ceu_A 77 NARNPSEPHDY--------A-G---HVSCSCHSVEEVKNR-K-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI 142 (210)
T ss_dssp CSSSCSCCTTC--------C-S---EEEEEECSHHHHHTT-G-GGSSEEEECCCC---------CCCCHHHHHHHHHTTC
T ss_pred Ccccccccccc--------C-C---EEEEecCCHHHHHHH-h-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 99998654332 2 2 799999999999999 7 99999999998 4 432 2333 3666766
Q ss_pred CCCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 234 VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 234 ~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.++||||+|||+++|+.+++++|++|||++++...
T Consensus 143 ~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 143 IDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp SSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHT
T ss_pred CCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHc
Confidence 68999999999999999999999999988777654
No 5
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=99.88 E-value=4.3e-22 Score=207.97 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=147.3
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++|+|||+..+.+.+ ..+++++++|+++||||.|+.+..++.+.++.+.+.|.. . .|++|+++++|.++|+|||||
T Consensus 17 ~~l~~It~~~~~~~~l-~~~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~-~l~v~~~~~~a~~~gad~v~l 94 (221)
T 1yad_A 17 MELHAITDDSKPVEEL-ARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKR-KLVMNGRVDIALFSTIHRVQL 94 (221)
T ss_dssp CEEEEECCSCSCHHHH-HHHHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHTTTCCEEEE
T ss_pred ccEEEEECCCcCcchH-HHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCC-eEEEeChHHHHHHcCCCEEEe
Confidence 3899999986655454 558889999999999999999999999999999998866 5 899999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCC
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKI 236 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~ 236 (921)
++.+.+...+|+.. ++ . ++|+|||+.+++..| ...|+||+++||+ |...+ ++. ..++++..++
T Consensus 95 ~~~~~~~~~~~~~~----~~-~---~ig~sv~t~~~~~~a-~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~ 165 (221)
T 1yad_A 95 PSGSFSPKQIRARF----PH-L---HIGRSVHSLEEAVQA-EKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISI 165 (221)
T ss_dssp CTTSCCHHHHHHHC----TT-C---EEEEEECSHHHHHHH-HHTTCSEEEEECCC----------CHHHHHHHHHHHCCS
T ss_pred CCCccCHHHHHHHC----CC-C---EEEEEcCCHHHHHHH-HhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 99988888888875 33 3 689999999999999 8999999999998 43332 233 4667767799
Q ss_pred CEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 237 PIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 237 Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
||+++|||+++|+.++.++|++||++.++.+..
T Consensus 166 pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 166 PVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp CEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 999999999999999999999999998887654
No 6
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=99.85 E-value=4.2e-21 Score=201.44 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=148.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHH---HHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSV---YEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~---~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
++|+||++..+.+.+.+.++.++++|+++||+|.++.+..++ .+.++.+.++|.. ++.+++|+++++|.++|+|||
T Consensus 19 ~i~~It~~~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v 98 (227)
T 2tps_A 19 SVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGI 98 (227)
T ss_dssp TEEEEECGGGCSSCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTCSEE
T ss_pred CEEEEECCccccchHHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcCHHHHHHHcCCCEE
Confidence 799999986544448889999999999999999998887777 7889999999988 899999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC------Ccc-hhhhhhc
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA------DVI-ENSLFTN 233 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~------g~~-~~~~~~~ 233 (921)
|+++.+.+...+|+..| . . ++|+|||+.+++..| ...|+||+++||+ |..+. ++. ..++++.
T Consensus 99 ~l~~~~~~~~~~~~~~g---~-~----~~~~s~~t~~e~~~a-~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~ 169 (227)
T 2tps_A 99 HIGQEDANAKEVRAAIG---D-M----ILGVSAHTMSEVKQA-EEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169 (227)
T ss_dssp EECTTSSCHHHHHHHHT---T-S----EEEEEECSHHHHHHH-HHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT
T ss_pred EECCCccCHHHHHHhcC---C-c----EEEEecCCHHHHHHH-HhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh
Confidence 99998888777887664 2 2 789999999999888 7899999999998 43322 333 4677777
Q ss_pred CC-CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VK-IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~-~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+ +||++.|||+++|+.++.++|++||++.++.+..
T Consensus 170 ~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 170 GISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQA 206 (227)
T ss_dssp TCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 77 9999999999999999999999999998877653
No 7
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=99.83 E-value=7.7e-20 Score=190.09 Aligned_cols=172 Identities=24% Similarity=0.393 Sum_probs=148.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
++|+|||+. +. ++.+.++.++++|+++|++|.|+.+..++.+.++.+.++|.. ++.+++|+++++|.++|+||||++
T Consensus 16 ~l~~It~~~-~~-~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v~l~ 93 (215)
T 1xi3_A 16 KLYVITDRR-LK-PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLG 93 (215)
T ss_dssp SEEEECCTT-TS-CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEEC
T ss_pred CEEEEECCc-hh-hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEcChHHHHHHcCCCEEEEC
Confidence 799999987 55 888999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCC-----cc-hhhhhhcCCCC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKAD-----VI-ENSLFTNVKIP 237 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g-----~~-~~~~~~~~~~P 237 (921)
..+++...++++. ++ . ++|++||+.+++..+ ...|+||++++|+ |..++| +. ..++++..++|
T Consensus 94 ~~~~~~~~~~~~~----~~-~---~~~v~~~t~~e~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p 164 (215)
T 1xi3_A 94 PEDMPIEVAKEIA----PN-L---IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIP 164 (215)
T ss_dssp TTSCCHHHHHHHC----TT-S---EEEEEESSHHHHHHH-HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSC
T ss_pred CccCCHHHHHHhC----CC-C---EEEEecCCHHHHHHH-HhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCC
Confidence 9888888888874 33 2 689999999999888 7899999999986 322222 22 35666677999
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|++.|||+++|+.++.++|++||++.++.+..
T Consensus 165 via~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 165 VVAIGGINKDNAREVLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEhHHHhCC
Confidence 99999999999999999999999988877654
No 8
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=99.79 E-value=1.7e-19 Score=185.20 Aligned_cols=168 Identities=13% Similarity=-0.040 Sum_probs=142.7
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
.+++.|.+.. +.+++.+.+++++++|+++||+|.|..+..+.++.+++ ..+|.. |. +++||++|+|.+.||||||+
T Consensus 13 ~~ii~vi~~~-~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~-~~~~~gag~-vl~~d~~~~A~~~GAd~v~~ 89 (207)
T 2yw3_A 13 SRLLPLLTVR-GGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRK-SGLLLGAGT-VRSPKEAEAALEAGAAFLVS 89 (207)
T ss_dssp HCEEEEECCC-SCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT-SSCEEEEES-CCSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC-CCCEEEeCe-EeeHHHHHHHHHcCCCEEEc
Confidence 3577777653 34578899999999999999999999988888888888 888887 77 77999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
++.+.+...+++..| .+ . ++| |||++|+.+| .+.|+||+.+-|- ... |+. .+.++... ++|++|+
T Consensus 90 ~~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~v~~fpa--~~~gG~~~lk~l~~~~~~ipvvai 157 (207)
T 2yw3_A 90 PGLLEEVAALAQARG---VP-Y---LPG--VLTPTEVERA-LALGLSALKFFPA--EPFQGVRVLRAYAEVFPEVRFLPT 157 (207)
T ss_dssp SSCCHHHHHHHHHHT---CC-E---EEE--ECSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHHHCTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---Eec--CCCHHHHHHH-HHCCCCEEEEecC--ccccCHHHHHHHHhhCCCCcEEEe
Confidence 998888777776666 44 2 456 8999999999 8999999999662 334 555 57777777 7999999
Q ss_pred cCCCccChHHHHHcCCcEEEEeecccc
Q 002437 242 NASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|||+++|+.+++++|++||+++++.+.
T Consensus 158 GGI~~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 158 GGIKEEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp SSCCGGGHHHHHTCSSBSCEEESGGGS
T ss_pred CCCCHHHHHHHHhCCCcEEEEehhhhC
Confidence 999999999999999999999998876
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=1.4e-17 Score=173.57 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC-CCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR-YLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++.+ +... ...++|..+......... + ..+.||
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~------------~-----------~~~~l~ 84 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA------------E-----------PVAHLV 84 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT------------S-----------CSEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC------------C-----------CcEEEE
Confidence 46899999999999999999999987 3333 333455544443332110 1 258999
Q ss_pred eCCCCChh------hhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVPR---ADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
||||++.. .+.+...+..++.. +|++|||+|++++.+..+..++..+...+.|+++|+||+|+... .+..
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~-~~~~ 163 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR-QESI 163 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH-HHHH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh-hhHH
Confidence 99998543 23445556666644 88899999999999999999999998889999999999999853 4445
Q ss_pred HHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...+.+.+.+..... ....+++++||+.+ .|++++.+.|.+.+..
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 164 NALRATQKSLDAYRDAGYAGKLTVQLFSALKR---------------------------TGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT---------------------------BSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhcccCCCCeEEEeecCCC---------------------------cCHHHHHHHHHHhcCc
Confidence 555555555554311 24578999999987 7999999999888764
No 10
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=99.75 E-value=2.8e-18 Score=176.70 Aligned_cols=168 Identities=8% Similarity=-0.022 Sum_probs=137.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
++..|.+.. +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 17 ~~i~v~r~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~~ 94 (214)
T 1wbh_A 17 PVVPVIVVK-KLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAIS 94 (214)
T ss_dssp SEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEEE
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEEc
Confidence 466666653 2447889999999999999999999988777555 45555566666 66 89999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
|+.+.+...+++..| .+ . ++| |||++|+.+| .+.|+||+.+=|- ... |+. .++++... ++|++++
T Consensus 95 p~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~v~~Fpa--~~~gG~~~lk~i~~~~~~ipvvai 162 (214)
T 1wbh_A 95 PGLTEPLLKAATEGT---IP-L---IPG--ISTVSELMLG-MDYGLKEFKFFPA--EANGGVKALQAIAGPFSQVRFCPT 162 (214)
T ss_dssp SSCCHHHHHHHHHSS---SC-E---EEE--ESSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHTTCTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---EEe--cCCHHHHHHH-HHCCCCEEEEecC--ccccCHHHHHHHhhhCCCCeEEEE
Confidence 999998888888776 45 2 457 8999999999 8999999999542 233 455 57788777 7999999
Q ss_pred cCCCccChHHHHHc-CCcEEEEeeccccc
Q 002437 242 NASPLVDVSKFLKS-GASGFVISLEDLSL 269 (921)
Q Consensus 242 GGi~~~~~~~~~~~-Ga~gva~~~a~~~~ 269 (921)
|||+++|+.+++++ |+.+|+ +++..+.
T Consensus 163 GGI~~~n~~~~l~agg~~~v~-gS~i~~~ 190 (214)
T 1wbh_A 163 GGISPANYRDYLALKSVLCIG-GSWLVPA 190 (214)
T ss_dssp SSCCTTTHHHHHTSTTBSCEE-EGGGSCH
T ss_pred CCCCHHHHHHHHhcCCCeEEE-eccccCh
Confidence 99999999999999 999998 7777654
No 11
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=99.74 E-value=2.1e-18 Score=178.60 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=136.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++.|.... +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 27 ~ii~V~r~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~ 104 (225)
T 1mxs_A 27 RILPVITIA-REEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVT 104 (225)
T ss_dssp SEEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEEC
T ss_pred CEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEe
Confidence 577776543 3447889999999999999999999887766555 45555566766 66 67999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
|+.|.+...+++..| .+ . ++| ||+++|+.+| .+.|+||+.+=|- ... |+. .+.++... ++|++++
T Consensus 105 p~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~vk~FPa--~~~~G~~~lk~i~~~~~~ipvvai 172 (225)
T 1mxs_A 105 PGITEDILEAGVDSE---IP-L---LPG--ISTPSEIMMG-YALGYRRFKLFPA--EISGGVAAIKAFGGPFGDIRFCPT 172 (225)
T ss_dssp SSCCHHHHHHHHHCS---SC-E---ECE--ECSHHHHHHH-HTTTCCEEEETTH--HHHTHHHHHHHHHTTTTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---EEe--eCCHHHHHHH-HHCCCCEEEEccC--ccccCHHHHHHHHhhCCCCeEEEE
Confidence 999998888888776 45 2 457 8999999999 8999999999441 122 455 57787777 7999999
Q ss_pred cCCCccChHHHHH-cCCcEEEEeeccccc
Q 002437 242 NASPLVDVSKFLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 242 GGi~~~~~~~~~~-~Ga~gva~~~a~~~~ 269 (921)
|||+++|+.++++ .|+.+|+ +++..+.
T Consensus 173 GGI~~~N~~~~l~~~Ga~~v~-gSai~~~ 200 (225)
T 1mxs_A 173 GGVNPANVRNYMALPNVMCVG-TTWMLDS 200 (225)
T ss_dssp SSCCTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred CCCCHHHHHHHHhccCCEEEE-EchhcCc
Confidence 9999999999999 7999999 8888653
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.73 E-value=3.1e-17 Score=179.91 Aligned_cols=166 Identities=25% Similarity=0.292 Sum_probs=123.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+-.|+++|.+|+|||||+|+|+|.++...+..+ ||.......+... .+ ..++||||
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~------------~~-----------~~i~lvDT 66 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP------------NE-----------AQIIFLDT 66 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET------------TT-----------EEEEEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC------------CC-----------CeEEEEEC
Confidence 458999999999999999999999887654444 4433222211111 01 25899999
Q ss_pred CCCChh------hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVI------LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~------~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||+... .+.+...+..++..+|++|||+|++++.+..+..+ +..+...+.|+++|+||+|+..+.+...+..+
T Consensus 67 PG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~ 146 (308)
T 3iev_A 67 PGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLID 146 (308)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH
T ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHH
Confidence 999532 35566677888999999999999999988888887 88888888999999999999844344444444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+.+. ++ ...+++++||+++ .|+++|.+.+.+.+.+.
T Consensus 147 ~l~~~----~~-~~~~i~~vSA~~g---------------------------~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 147 EIHKK----HP-ELTEIVPISALKG---------------------------ANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHH----CT-TCCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCBC
T ss_pred HHHHh----cc-CCCeEEEEeCCCC---------------------------CCHHHHHHHHHHhCccC
Confidence 44332 22 2468999999987 79999999999988754
No 13
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.73 E-value=2.2e-16 Score=189.08 Aligned_cols=172 Identities=21% Similarity=0.291 Sum_probs=120.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh------------------------hcc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ------------------------QRC- 417 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~------------------------~~~- 417 (921)
..|.|+|+|.+|+|||||+|+|+|.+++|.+..++|.+++.+.....+.... ...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5789999999999999999999999999999999999887776533221000 000
Q ss_pred ---cccCCCeEEeecCCCcccccEEEeCCCCChhh---------hHHHHHHHHhc-CCCCEEEEEEeCCCCCCHHHH-HH
Q 002437 418 ---ERHPDGQYICYLPSPILKEMIIVDTPGTNVIL---------QRQQRLTEEFV-PRADLVLFVISADRPLTESEV-VF 483 (921)
Q Consensus 418 ---~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~---------~~~~~~~~~~l-~~aD~il~V~da~~~~t~~e~-~~ 483 (921)
.......+...+..|...+++||||||+.... .....++..|+ ..+|+||+|+|++.+.+..+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00111223333444555689999999997521 34556777777 689999999999988776666 78
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh--CCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL--NIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~v~~vSA~~~ 540 (921)
+..+...+.|+|+|+||+|+.........+. . ...+ .....+|+++||+.+
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il---~---~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTDARDVL---E---NKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCCSHHHH---T---TCSSCCSSCEEECCCCCCEES
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchhhHHHH---H---HHhhhhhccCCceEEeccccc
Confidence 8999988999999999999986532221111 1 1111 112357899999886
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.71 E-value=2.3e-16 Score=160.14 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=116.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.+.......+ +|......... ..+.+||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~i~D 74 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN---------------------------SKYYFVD 74 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET---------------------------TTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC---------------------------CcEEEEE
Confidence 4579999999999999999999998754433332 23322222111 2488999
Q ss_pred CCCCChh------hhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 442 TPGTNVI------LQRQQRLTEEFVPR---ADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 442 TPG~~~~------~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
|||++.. ...+...+..++.. +|++++|+|++.+.+..+..++..+...+.|+++|+||+|+... ++.+.
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~ 153 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM-SERAK 153 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG-GGHHH
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh-HHHHH
Confidence 9997432 23344555566544 49999999999888888888888888889999999999999854 44444
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+.+...+... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~~~~~~~~~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 154 KLEEHRKVFSKY---GEYTIIPTSSVTG---------------------------EGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHHSS---CCSCEEECCTTTC---------------------------TTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc---CCCceEEEecCCC---------------------------CCHHHHHHHHHHHhh
Confidence 444444433321 3468999999987 689999988887765
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.71 E-value=2e-16 Score=160.97 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=111.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++..+.+ .... .+|.....+... ..+.+|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~l~ 74 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---------------------------DELHFV 74 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---------------------------TTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC---------------------------CcEEEE
Confidence 57899999999999999999999986332 2222 223322222111 248999
Q ss_pred eCCCCChh------hhHHHHHHHHhcCCC---CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVPRA---DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~~a---D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
||||++.. .+.+...+..++..+ |++++|+|++++.+..+..++..+...+.|+++|+||+|+... .+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~ 153 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK-GKWD 153 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG-GGHH
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-HHHH
Confidence 99997533 344455666776655 9999999999999988888888888888999999999999854 3344
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+.+.+.+. .....+++++||+.+ .|++++.+.+.+.+
T Consensus 154 ~~~~~~~~~~~---~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 154 KHAKVVRQTLN---IDPEDELILFSSETK---------------------------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHHHHHT---CCTTSEEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---ccCCCceEEEEccCC---------------------------CCHHHHHHHHHHHh
Confidence 44344443332 123578999999886 68888888887655
No 16
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=99.71 E-value=1.7e-17 Score=171.64 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=131.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
++..|.-.. +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 18 ~ii~vir~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~ 95 (224)
T 1vhc_A 18 KIVPVIALD-NADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVT 95 (224)
T ss_dssp CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEEC
T ss_pred CeEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEE
Confidence 344444332 2347889999999999999999999988776554 55555566665 66 55999999999999999999
Q ss_pred CCCCCCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEE
Q 002437 165 SDQGLPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFI 240 (921)
Q Consensus 165 ~~~~l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~a 240 (921)
++.|.+. ..+|. .| +. . ++| |||+.|+.+| .+.|+||+.+=| .... |+. .++++... ++|+++
T Consensus 96 p~~d~~v~~~ar~-~g---~~-~---i~G--v~t~~e~~~A-~~~Gad~vk~Fp--a~~~gG~~~lk~l~~~~~~ipvva 162 (224)
T 1vhc_A 96 PGLNPKIVKLCQD-LN---FP-I---TPG--VNNPMAIEIA-LEMGISAVKFFP--AEASGGVKMIKALLGPYAQLQIMP 162 (224)
T ss_dssp SSCCHHHHHHHHH-TT---CC-E---ECE--ECSHHHHHHH-HHTTCCEEEETT--TTTTTHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCHHHHHHHHH-hC---CC-E---Eec--cCCHHHHHHH-HHCCCCEEEEee--CccccCHHHHHHHHhhCCCCeEEE
Confidence 9999884 56666 65 44 3 567 8899999999 899999999954 2233 455 57788877 799999
Q ss_pred EcCCCccChHHHHHc-CCcEEEEeecccc
Q 002437 241 MNASPLVDVSKFLKS-GASGFVISLEDLS 268 (921)
Q Consensus 241 iGGi~~~~~~~~~~~-Ga~gva~~~a~~~ 268 (921)
+|||+++|+.+++++ |+.+|+ +++..+
T Consensus 163 iGGI~~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 163 TGGIGLHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp BSSCCTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred ECCcCHHHHHHHHhcCCCEEEE-EchhcC
Confidence 999999999999999 999998 777765
No 17
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.70 E-value=2.5e-16 Score=171.83 Aligned_cols=160 Identities=23% Similarity=0.269 Sum_probs=115.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...|+++|.+|+|||||+|+|+|.++...+..| ||.......+.. .+ ..+.||||
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-------------~~-----------~~l~l~DT 62 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-------------GR-----------RQIVFVDT 62 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-------------CC-----------cEEEEecC
Confidence 357999999999999999999999887654444 443221111100 01 14899999
Q ss_pred CCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 443 PGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 443 PG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||+... .+.....+..++..+|++|||+|++++.+..+..+++.+... +.|+++|+||+|+.....+ +.+.
T Consensus 63 pG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~ 139 (301)
T 1wf3_A 63 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE---AMKA 139 (301)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH---HHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH---HHHH
Confidence 998642 223456677889999999999999998888887777888876 8999999999999865321 2222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+ ..+ ....+++++||+++ .|++.|.+.+.+.+.+
T Consensus 140 ~----~~~--~~~~~~~~iSA~~g---------------------------~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 140 Y----HEL--LPEAEPRMLSALDE---------------------------RQVAELKADLLALMPE 173 (301)
T ss_dssp H----HHT--STTSEEEECCTTCH---------------------------HHHHHHHHHHHTTCCB
T ss_pred H----HHh--cCcCcEEEEeCCCC---------------------------CCHHHHHHHHHHhccc
Confidence 2 222 23457999999987 6788888888877653
No 18
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=8e-17 Score=180.00 Aligned_cols=324 Identities=15% Similarity=0.102 Sum_probs=158.0
Q ss_pred EEecCCHHHHHcccccCCCCEEEeCCCC---CCCC----Ccc-hhhhhhcCCCCEEEE-cCCCccChHHHHH-cCCcEEE
Q 002437 192 GRNVQTLDAAFNASSSEGADFLVCCFGE---GQKA----DVI-ENSLFTNVKIPIFIM-NASPLVDVSKFLK-SGASGFV 261 (921)
Q Consensus 192 g~S~h~~~e~~~A~~~~gaDyv~~gpvT---k~~~----g~~-~~~~~~~~~~Pv~ai-GGi~~~~~~~~~~-~Ga~gva 261 (921)
-.+-.+++|+..-+... .|-+++.++ ++++ |-+ ..++......-++.. +-++|.....+.+ .|+.-|.
T Consensus 7 ~~~~~~~~e~~~l~~~~--~~~~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q~~~l~~~~~~~~v~ 84 (364)
T 2qtf_A 7 FVSKEFEEEAIALVEGA--NYKVTSIYKLPKSPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRHFINIRRELKGKEVL 84 (364)
T ss_dssp ECCTTTHHHHHHHHHHT--TEEEEEEECCCSSCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHHHHHHHHHHTTCEEE
T ss_pred eCcHHHHHHHHHHHHHC--CCEEEEEEEEccCCCCcceechhHHHHHhhccCCCEEEECCCCCHHHHHHHHHHhCCCcee
Confidence 34456788876432444 455555551 3333 333 355555334443333 4455554443332 1220110
Q ss_pred EeecccccchHHHHHhhhcccCCCcc-c-ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHH
Q 002437 262 ISLEDLSLFNDGVLSQMFCANGTTNE-K-TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAID 339 (921)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 339 (921)
=.-+++=.+|+....+.. + +..++++.+..... ..+....+..+.+++.|+++..++..++.+.+.+.
T Consensus 85 --------dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~ 154 (364)
T 2qtf_A 85 --------DKILLLLEIFALHAGSKEAKMQIELARLKYELPII--KETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRIN 154 (364)
T ss_dssp --------CHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HHC---------------------CHHHHHHHHHH
T ss_pred --------ehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--hhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence 011122233333222222 2 56666666555443 24455566677888888888888888888888887
Q ss_pred HHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccc
Q 002437 340 VIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCER 419 (921)
Q Consensus 340 ~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~ 419 (921)
.+++....+...+...+........+.|+++|.+|+|||||+|+|+|......+...+|.+++......
T Consensus 155 ~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~----------- 223 (364)
T 2qtf_A 155 KLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI----------- 223 (364)
T ss_dssp HHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-----------
Confidence 777654333322222221111223456999999999999999999998764445555554433221110
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChh-----hhHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHH----HHHHHhh
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVI-----LQRQQRLTEEFVPRADLVLFVISADRPL--TESEV----VFLRYTQ 488 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~-----~~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~----~~l~~l~ 488 (921)
+| ..+.++||||+... .+. ...+...+..+|++++|+|++++. ..... +++..+.
T Consensus 224 --~g-----------~~v~l~DT~G~i~~lp~~lve~-f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 224 --NN-----------RKIMLVDTVGFIRGIPPQIVDA-FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp --TT-----------EEEEEEECCCBCSSCCGGGHHH-HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred --CC-----------EEEEEEeCCCchhcCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 11 14789999997321 122 234566789999999999998764 22222 2344443
Q ss_pred hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccccc
Q 002437 489 QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRIN 568 (921)
Q Consensus 489 ~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~s 568 (921)
..+.|+++|.||+|+.... ..+........... +....++++++||+++ .
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~l~~~-l~~~~~~~~~~SA~~g---------------------------~ 339 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGD--LYKKLDLVEKLSKE-LYSPIFDVIPISALKR---------------------------T 339 (364)
T ss_dssp CCSCCEEEEEECGGGCCSC--HHHHHHHHHHHHHH-HCSCEEEEEECBTTTT---------------------------B
T ss_pred cCCCCEEEEEECCCCCCch--HHHHHHHHHHHHHH-hcCCCCcEEEEECCCC---------------------------c
Confidence 3568999999999998542 11211222111122 2112357899999987 7
Q ss_pred chHHHHHHHHHhhc
Q 002437 569 TFDKLEKLLYSFLD 582 (921)
Q Consensus 569 g~~~L~~~l~~~l~ 582 (921)
|++.|.+.|.+.+.
T Consensus 340 gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 340 NLELLRDKIYQLAT 353 (364)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 89999998888765
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=9.8e-17 Score=185.18 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.+... ....+||..+....+.. +| ..+.||
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-------------~g-----------~~l~li 286 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-------------DK-----------TMFRLT 286 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-------------TT-----------EEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-------------CC-----------eEEEEE
Confidence 356899999999999999999999986543 33444555433221111 11 148999
Q ss_pred eCCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCH----HHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 441 DTPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTE----SEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 441 DTPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~----~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
||||+........ ..+..++..+|++|||+|++++.+. ....++..+. +.|+++|+||+|+...... ..
T Consensus 287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~-~~ 363 (476)
T 3gee_A 287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA-LI 363 (476)
T ss_dssp C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH-HH
T ss_pred ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch-hH
Confidence 9999854322111 3356678999999999999998877 5566777666 6899999999999865321 11
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .+... + ..+++++||+++ .|+++|.+.+.+.+.
T Consensus 364 --~----~l~~~-~--~~~~i~vSAktg---------------------------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 364 --R----AIADG-T--GTEVIGISALNG---------------------------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp --H----HHHHH-H--TSCEEECBTTTT---------------------------BSHHHHHHHHTHHHH
T ss_pred --H----HHHhc-C--CCceEEEEECCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 12221 1 257999999987 799999999988876
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=5.2e-17 Score=173.12 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=112.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|+|.+.......++|.......+... + ..+.||||||
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-------------~-----------~~~~lvDtpG 57 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-------------E-----------HLIEITDLPG 57 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-------------T-----------EEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-------------C-----------eEEEEEeCCC
Confidence 589999999999999999999987655555555554443322211 1 1489999999
Q ss_pred CChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 445 TNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 445 ~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
+.+.. ...+.++..++ ..+|++|+|+|+++. .....++.++.+.+.|+++|+||+|+.... .......
T Consensus 58 ~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~-~~~~~~~- 133 (256)
T 3iby_A 58 VYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHR-GISIDTE- 133 (256)
T ss_dssp CSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHT-TCEECHH-
T ss_pred cccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcC-CcHHHHH-
Confidence 97654 34455777888 999999999999873 566677888888899999999999985321 1111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.+...++ .+++++||+.+ .|+++|.+.+.+.
T Consensus 134 ---~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~ 164 (256)
T 3iby_A 134 ---KLESLLG---CSVIPIQAHKN---------------------------IGIPALQQSLLHC 164 (256)
T ss_dssp ---HHHHHHC---SCEEECBGGGT---------------------------BSHHHHHHHHHTC
T ss_pred ---HHHHHcC---CCEEEEECCCC---------------------------CCHHHHHHHHHhh
Confidence 1223333 68999999987 6899999888877
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.67 E-value=4.4e-16 Score=163.11 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=106.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......+|..+....+... + ..+.||||
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~l~Dt 83 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-------------L-----------NKYQIIDT 83 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-------------T-----------EEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-------------C-----------CeEEEEEC
Confidence 46899999999999999999999987654444444544333221110 0 14899999
Q ss_pred CCCChhh--hH---HHHHHHHhcCCCCEEEEEEeCCCCCC---HHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHH
Q 002437 443 PGTNVIL--QR---QQRLTEEFVPRADLVLFVISADRPLT---ESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 443 PG~~~~~--~~---~~~~~~~~l~~aD~il~V~da~~~~t---~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~ 512 (921)
||+.... +. .......+...+|++|||+|++++.+ .....++..+... +.|+++|+||+|+.....-..+
T Consensus 84 pG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~ 163 (228)
T 2qu8_A 84 PGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSID 163 (228)
T ss_dssp TTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHH
T ss_pred CCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHH
Confidence 9984321 11 12234456788999999999987654 3345677777665 7899999999999754211111
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
....... +....+ ...+++++||+++ .|++++.+.+.+.+.
T Consensus 164 ~~~~~~~-~~~~~~-~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 164 NKLLIKQ-ILDNVK-NPIKFSSFSTLTG---------------------------VGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHHH-HHHHCC-SCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhcC-CCceEEEEecccC---------------------------CCHHHHHHHHHHHHH
Confidence 1111111 111111 1268999999987 688898888887765
No 22
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=1.5e-15 Score=167.15 Aligned_cols=193 Identities=19% Similarity=0.282 Sum_probs=115.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc------hhh---------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE------EQQ--------------------- 415 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~------~~~--------------------- 415 (921)
..+.|+|+|.+|+|||||+|+|+|.+++|.+...+|..++.+.....+.. ...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 56899999999999999999999999988887777776643322221000 000
Q ss_pred -----ccc----ccCCCeEEeecCCCcccccEEEeCCCCCh---------hhhHHHHHHHHhcCCCCEEEEEEeC-CCCC
Q 002437 416 -----RCE----RHPDGQYICYLPSPILKEMIIVDTPGTNV---------ILQRQQRLTEEFVPRADLVLFVISA-DRPL 476 (921)
Q Consensus 416 -----~~~----~~~~g~~~~~~p~~~l~~l~lvDTPG~~~---------~~~~~~~~~~~~l~~aD~il~V~da-~~~~ 476 (921)
+.. ......+.+.+..+...+++||||||+.. ........+..++..+|++++|+|+ +...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 00001111111222234799999999863 1234667788899999999999996 5454
Q ss_pred CHHH-HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCc
Q 002437 477 TESE-VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDH 555 (921)
Q Consensus 477 t~~e-~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~ 555 (921)
+..+ ..++..+...+.|+++|+||+|+...... ..+.+. ..+......++++|+..+....
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~---~~~~~~----~~~~~~~~~~~~v~~~sa~~~~----------- 244 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD---AMEVLT----GRVIPLTLGFIGVINRSQEDII----------- 244 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC---CHHHHT----TSSSCCTTCEEECCCCCHHHHS-----------
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH---HHHHHh----CCCccCCCCeEEEecCChhhhc-----------
Confidence 4333 46778888888999999999999865321 112221 1111122567888887763211
Q ss_pred ccccccCccccccchHHHHHHHHHhhcc
Q 002437 556 SELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 556 ~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...|+.++.+.+.+++..
T Consensus 245 ----------~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 245 ----------AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp ----------SSCCHHHHHHHHHHHHHT
T ss_pred ----------cCCCHHHHHHHHHHHHhC
Confidence 025788888888887764
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.65 E-value=7.4e-16 Score=151.20 Aligned_cols=155 Identities=25% Similarity=0.270 Sum_probs=106.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|.+........ .++|.......... ++ ..+.++|||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~l~Dt~ 57 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-------------DR-----------GRFLLVDTG 57 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-------------TT-----------EEEEEEECG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-------------CC-----------ceEEEEECC
Confidence 689999999999999999999887543222 23333222221111 11 148899999
Q ss_pred CCChh---hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 444 GTNVI---LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 444 G~~~~---~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|.... .......+..++..+|++++|+|++++.+..+..+...+...+.|+++|+||+|+....++
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------- 126 (161)
T 2dyk_A 58 GLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY----------- 126 (161)
T ss_dssp GGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG-----------
T ss_pred CCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh-----------
Confidence 98642 2334566778899999999999999988888777777777788999999999999754211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
..++......+++++||+.+ .|++++.+.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 LGPLYGLGFGDPIPTSSEHA---------------------------RGLEELLEAIWERL 160 (161)
T ss_dssp CGGGGGGSSCSCEECBTTTT---------------------------BSHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCeEEEecccC---------------------------CChHHHHHHHHHhC
Confidence 11111112237899999987 68888888876653
No 24
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.64 E-value=1.3e-15 Score=155.35 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=109.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+......||+. .....+.. .+ ..+.||||
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt 70 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFEK-------------GR-----------VAFTVFDM 70 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEEe-------------CC-----------EEEEEEEC
Confidence 5689999999999999999999998876544555554 22221110 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc-----------CCeEEEEEeCCCCCCChHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW-----------KKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~-----------~~~vivVlNK~D~~~~~~~~ 510 (921)
||.. .+...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+... ...
T Consensus 71 ~G~~----~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~ 145 (199)
T 4bas_A 71 GGAK----KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA-KTA 145 (199)
T ss_dssp CCSG----GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC-CCH
T ss_pred CCCH----hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC-CCH
Confidence 9984 3345567889999999999999987665544 445544332 7899999999999865 222
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++.+.+.. .........+++++||+++ .|++++.+.|.+.+.
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 146 AELVEILDL--TTLMGDHPFVIFASNGLKG---------------------------TGVHEGFSWLQETAS 188 (199)
T ss_dssp HHHHHHHTH--HHHHTTSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--hhhccCCeeEEEEeeCCCc---------------------------cCHHHHHHHHHHHHH
Confidence 333333221 1111234578999999987 688888888877665
No 25
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.64 E-value=3.2e-16 Score=156.69 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=111.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+.+.....+|..+....+.. ++ ..+.+||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~l~D 61 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-------------ND-----------KKITFLD 61 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-------------TT-----------EEEEESC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-------------CC-----------ceEEEEE
Confidence 46789999999999999999999998776443333332221111100 11 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||..... .....++..+|++|+|+|++++......+.+..+...+.|+++|+||+|+.... .+++...+.. .
T Consensus 62 t~G~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~-~ 134 (178)
T 2lkc_A 62 TPGHEAFT----TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN--PDRVMQELME-Y 134 (178)
T ss_dssp CCSSSSSS----CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC--HHHHHHHHTT-T
T ss_pred CCCCHHHH----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC--HHHHHHHHHh-c
Confidence 99975332 234467789999999999998888888888888877889999999999997541 1222222111 1
Q ss_pred HHhhCCC--CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIE--NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~--~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTK---------------------------EGLDHLLEMILLVSE 170 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSS---------------------------HHHHHHHHHHHHHHH
T ss_pred CcChhHcCCcccEEEEecCCC---------------------------CCHHHHHHHHHHhhh
Confidence 1110111 258999999987 688888888876654
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=1.5e-16 Score=183.03 Aligned_cols=158 Identities=22% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||..+...... .+| ..+.|||
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~-------------~~g-----------~~v~liD 278 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-------------VGG-----------IPVQVLD 278 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE-------------ETT-----------EEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE-------------ECC-----------EEEEEEE
Confidence 46889999999999999999999986543 3334455433211110 012 1489999
Q ss_pred CCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+.......+ ..+..++..+|++|+|+|++++.+..+..++..+.. +|+++|+||+|+.... ...
T Consensus 279 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~-~~~------ 349 (462)
T 3geh_A 279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQ-LIT------ 349 (462)
T ss_dssp --------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGG-GST------
T ss_pred CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcch-hhH------
Confidence 999854322111 235567899999999999999999888888887765 7999999999997542 111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+..+. ...+++++||+++ .|+++|.+.+.+.+...
T Consensus 350 --~~~~~~--~~~~~i~iSAktg---------------------------~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 350 --SLEYPE--NITQIVHTAAAQK---------------------------QGIDSLETAILEIVQTG 385 (462)
T ss_dssp --TCCCCT--TCCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHTTS
T ss_pred --HHHHhc--cCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHhcc
Confidence 111111 3468999999987 79999999999887653
No 27
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.63 E-value=2.7e-16 Score=169.47 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=110.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+...+ ..+.+|||
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~------------------------~~~~liDt 57 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD------------------------HQVTLVDL 57 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS------------------------CEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC------------------------CceEEEEC
Confidence 358999999999999999999999885444444455444333222111 24899999
Q ss_pred CCCChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 443 PGTNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 443 PG~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
||+.+.. .....++..++ ..+|++|+|+|+++. .....++.++.+.+.|+++|+||+|+.... ......
T Consensus 58 pG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~-~~~~~~ 134 (274)
T 3i8s_A 58 PGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQ-NIRIEI 134 (274)
T ss_dssp CCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHT-TEEECH
T ss_pred cCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhh-hHHHHH
Confidence 9987543 12234555555 799999999999863 556667778888899999999999985321 100011
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+.++ .+++++||+.+ .|+++|.+.+.+.+..
T Consensus 135 ----~~l~~~lg---~~~i~~SA~~g---------------------------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 135 ----DALSARLG---CPVIPLVSTRG---------------------------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp ----HHHHHHHT---SCEEECCCGGG---------------------------HHHHHHHHHHHTCCCC
T ss_pred ----HHHHHhcC---CCEEEEEcCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 12222233 68999999987 5777888777776653
No 28
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=2.1e-15 Score=174.21 Aligned_cols=157 Identities=29% Similarity=0.358 Sum_probs=111.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+.. .....+||.++....+.. +| ..+.|||
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-------------~g-----------~~~~l~D 297 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-------------RG-----------ILFRIVD 297 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-------------TT-----------EEEEEEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-------------CC-----------eEEEEEE
Confidence 4689999999999999999999998754 344555665443222111 11 1489999
Q ss_pred CCCCC-hhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTN-VILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~-~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||+. .... .....+..++..+|++|+|+|++++.+..+.++++.+ .++|+++|+||+|+... ...+++.
T Consensus 298 TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~-~~~~~~~-- 372 (482)
T 1xzp_A 298 TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK-INEEEIK-- 372 (482)
T ss_dssp SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC-CCHHHHH--
T ss_pred CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc-cCHHHHH--
Confidence 99986 3211 1123466788999999999999998888887777666 36899999999999753 1222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+ ...+++++||+++ .|+++|.+.|.+.+.
T Consensus 373 ------~~~~-~~~~~i~iSAktg---------------------------~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 373 ------NKLG-TDRHMVKISALKG---------------------------EGLEKLEESIYRETQ 404 (482)
T ss_dssp ------HHHT-CSTTEEEEEGGGT---------------------------CCHHHHHHHHHHHTH
T ss_pred ------HHhc-CCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1122 2368999999987 799999999888654
No 29
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=3.2e-15 Score=175.87 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=119.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchh----------------hcccccCCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQ----------------QRCERHPDG 423 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~----------------~~~~~~~~g 423 (921)
...++|+|+|.+|+|||||+|+|+|.++. +.+..|+|..++.+.++....... ........+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999999876 577888887776666654321100 000112245
Q ss_pred eEEeecCCCcccccEEEeCCCCChhhhH-------HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcCCeEE
Q 002437 424 QYICYLPSPILKEMIIVDTPGTNVILQR-------QQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWKKKVV 495 (921)
Q Consensus 424 ~~~~~~p~~~l~~l~lvDTPG~~~~~~~-------~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~~~vi 495 (921)
+..+.+|.+++..++||||||+...... +...+..++..+|+||||+|+++. .+..+..++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 5667788877788999999999742111 456778888999999999999874 67788888999988889999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 496 FVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 496 vVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
+|+||+|+.. .+++.++...+...+...+
T Consensus 223 lVlNK~Dl~~-~~el~~~~~~l~~s~~~i~ 251 (550)
T 2qpt_A 223 VVLNKADMVE-TQQLMRVYGALMWALGKVV 251 (550)
T ss_dssp EEEECGGGSC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCccC-HHHHHHHHHHhhcchhhee
Confidence 9999999985 4566666666654444433
No 30
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.61 E-value=3.7e-15 Score=160.42 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=107.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|+|..........+|.......+.. .+ ..+.+||||
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~Dtp 58 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-------------RE-----------KEFLVVDLP 58 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-------------TT-----------EEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-------------CC-----------ceEEEEeCC
Confidence 579999999999999999999998763333333443333222111 11 148999999
Q ss_pred CCChhhh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+.+... ....++..++ ..+|++++|+|+++. .....++..+...+ .|+++|+||+|+.... ..... .
T Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~----~ 131 (271)
T 3k53_A 59 GIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKK-GAKID----I 131 (271)
T ss_dssp CCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHH-TCCCC----H
T ss_pred CccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCccc-ccHHH----H
Confidence 9875422 2334555666 789999999999874 45566777777777 9999999999975321 00000 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+.++ .+++++||+.+ .|++++.+.+.+.+..
T Consensus 132 ~~l~~~lg---~~~~~~Sa~~g---------------------------~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 132 KKMRKELG---VPVIPTNAKKG---------------------------EGVEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHS---SCEEECBGGGT---------------------------BTHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CcEEEEEeCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 12223333 68999999987 6888888888777654
No 31
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.61 E-value=4.6e-15 Score=147.06 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=106.9
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+...++|+|+|.+|+|||||+|+|++..+. ...||+. .....+.. ++ ..+.+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~-~~~~~~~~-------------~~-----------~~~~~~ 56 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--TTIPTIG-FNVETVTY-------------KN-----------LKFQVW 56 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSS-EEEEEEEE-------------TT-----------EEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCc-cceEEEEE-------------CC-----------EEEEEE
Confidence 456789999999999999999999987653 2334332 11111100 01 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||... ....+..++..+|++++|+|++++.+..+. .++..+ .. .+.|+++|+||+|+.... +.+++..
T Consensus 57 Dt~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~ 131 (171)
T 1upt_A 57 DLGGLTS----IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMAN 131 (171)
T ss_dssp EECCCGG----GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCChh----hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHH
Confidence 9999743 334567788999999999999987655443 234433 22 578999999999997642 2223322
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 132 ~~~---~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 132 SLG---LPALKDRKWQIFKTSATKG---------------------------TGLDEAMEWLVETLK 168 (171)
T ss_dssp HHT---GGGCTTSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HhC---chhccCCceEEEECcCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 221 1112223468999999987 688888888877664
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.61 E-value=1.4e-15 Score=150.46 Aligned_cols=159 Identities=14% Similarity=0.244 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.+......+..+....+.. ++.. ..+.++||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-------------NGKK---------VKLQIWDT 59 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-------------SSCE---------EEEEEECC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 4589999999999999999999988764332222222222211111 1100 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||... ....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++......
T Consensus 60 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (170)
T 1g16_A 60 AGQER----FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135 (170)
T ss_dssp TTGGG----TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred CCChh----hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH
Confidence 99642 233466778999999999999876443332 34444443 36899999999999533222222222211
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 -----~~---~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 136 -----EL---GIPFIESSAKND---------------------------DNVNEIFFTLAKLIQ 164 (170)
T ss_dssp -----HH---TCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----Hc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12 257999999987 688888888877654
No 33
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.61 E-value=5.3e-15 Score=149.78 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=106.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+.. ....... .+ ..+.||||
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~-~~~~~~~-------------~~-----------~~~~l~Dt 74 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGF-NMRKITK-------------GN-----------VTIKLWDI 74 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSE-EEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCce-eEEEEEe-------------CC-----------EEEEEEEC
Confidence 4689999999999999999999987654 233343332 1111110 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. ++....+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+.... +.+++.+.+
T Consensus 75 ~G~----~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~ 149 (188)
T 1zd9_A 75 GGQ----PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKM 149 (188)
T ss_dssp CCS----HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHT
T ss_pred CCC----HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHh
Confidence 997 34455677888999999999999876554443 34444322 568999999999997542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 150 ~---~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 150 N---LSAIQDREICCYSISCKEK---------------------------DNIDITLQWLIQHSK 184 (188)
T ss_dssp T---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHTCC
T ss_pred C---hhhhccCCeeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1112223568999999987 689999998887765
No 34
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.61 E-value=5.3e-15 Score=150.89 Aligned_cols=181 Identities=16% Similarity=0.219 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEE--EEccCCccc------hhhccc-ccCCCeEEe----
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITF--LRFSDLASE------EQQRCE-RHPDGQYIC---- 427 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~--~~~~~~~~~------~~~~~~-~~~~g~~~~---- 427 (921)
+..++|+|+|.+|+|||||+|+|++..+. ....+|+. .+.. +.+...... ...... ....+....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35689999999999999999999998754 33344443 2222 122111000 000000 000000000
Q ss_pred -ecC-CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cCCeEEEEEeCCCC
Q 002437 428 -YLP-SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WKKKVVFVLNKSDL 503 (921)
Q Consensus 428 -~~p-~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~~~vivVlNK~D~ 503 (921)
..+ ......+.||||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQE----RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGG----GCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred ccccCccceeEEEEEECCCcH----HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 000 0011358999999963 3334577888999999999999987554443 35555544 45899999999993
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 504 YQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 504 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+++.+.... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 160 NKFQVDILEVQKYAQD--------NNLLFIQTSAKTG---------------------------TNIKNIFYMLAEEIY 203 (208)
T ss_dssp C-CCSCHHHHHHHHHH--------TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH--------cCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222223343333322 2468999999987 688888888776654
No 35
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.61 E-value=3.3e-15 Score=147.44 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=88.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++....+....+.+.....+... +.. ..+.++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------~~~~i~D~~ 57 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD---------------GEE---------ASLMVYDIW 57 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEET---------------TEE---------EEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEEC---------------CEE---------EEEEEEECC
Confidence 47899999999999999999998775443332222211111111 110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. ........++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 58 g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-- 131 (166)
T 3q72_A 58 EQD----GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-- 131 (166)
T ss_dssp -------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH--
T ss_pred CCc----cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH--
Confidence 973 4455677788999999999999976544433 34444443 3689999999999975421 1111111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 132 ---~~~~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 132 ---CAVV---FDCKFIETSAALH---------------------------HNVQALFEGVVRQIR 163 (166)
T ss_dssp ---HHHH---TTCEEEECBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred ---HHHH---hCCcEEEeccCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2368999999987 688888888877654
No 36
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.61 E-value=8.2e-15 Score=147.80 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++.+ .....||+. ........ ++ ..+.++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~~~D 68 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLG-FNIKTLEH-------------RG-----------FKLNIWD 68 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSS-EEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCc-cceEEEEE-------------CC-----------EEEEEEE
Confidence 367999999999999999999999887 444555543 21111100 01 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ++....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+.
T Consensus 69 t~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 143 (186)
T 1ksh_A 69 VGGQ----KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-LSCNAIQEA 143 (186)
T ss_dssp ECCS----HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred CCCC----HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-CCHHHHHHH
Confidence 9997 34455677889999999999999987655443 34444432 46899999999999754 222222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.. ........+++++||+++ .|++++.+.+.+.+.
T Consensus 144 ~~~---~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 144 LEL---DSIRSHHWRIQGCSAVTG---------------------------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTG---GGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred hCh---hhccCCceEEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 110 111223568999999987 688888888877665
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1.3e-15 Score=175.36 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=113.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||.......+.. +| ..+.|||
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-------------~~-----------~~~~l~D 229 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-------------NQ-----------QEFVIVD 229 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-------------TT-----------EEEEETT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-------------CC-----------eEEEEEE
Confidence 56899999999999999999999987653 33344554332211111 11 1489999
Q ss_pred CCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH-HHHHH
Q 002437 442 TPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF-ELEEA 513 (921)
Q Consensus 442 TPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~-~~~~v 513 (921)
|||+... .+.+.. ....++..+|++|+|+|++++.+.++..++..+...+.|+++|+||||+..... ..+++
T Consensus 230 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~ 309 (436)
T 2hjg_A 230 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEF 309 (436)
T ss_dssp HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHH
T ss_pred CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHH
Confidence 9997321 122222 234578899999999999999999999988888888999999999999986422 23444
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+.+.+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 310 ~~~~~~~l~~~---~~~~~~~~SA~tg---------------------------~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 310 EENIRDHFQFL---DYAPILFMSALTK---------------------------KRIHTLMPAIIKASE 348 (436)
T ss_dssp HHHHHHHCGGG---TTSCEEECCTTTC---------------------------TTGGGHHHHHHHHHH
T ss_pred HHHHHHhcccC---CCCCEEEEecccC---------------------------CCHHHHHHHHHHHHH
Confidence 45444443322 3578999999987 577777777766544
No 38
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=1e-14 Score=154.71 Aligned_cols=172 Identities=20% Similarity=0.163 Sum_probs=106.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC--ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~--tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|+|+|.+....+..+ +|.......... ++ ..++||
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-------------~~-----------~~i~li 75 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-------------DK-----------CHVEVV 75 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-------------CC-----------cEEEEE
Confidence 5689999999999999999999999877655443 554433322211 11 258999
Q ss_pred eCCCCChhhhH----HHHHHH----HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc------CCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVILQR----QQRLTE----EFVPRADLVLFVISADRPLTESEVVFLRYTQQW------KKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~~----~~~~~~----~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~------~~~vivVlNK~D~~~~ 506 (921)
||||+.+.... ....+. ...+.+|++|+|+|+++ ++..+..+++.+... +.|+++|.||+|+...
T Consensus 76 DTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 76 DTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp ECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred ECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 99998543211 111222 23499999999999985 777777777776653 6799999999999753
Q ss_pred hHHHHHHHHHH-HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 507 AFELEEAISFV-KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 507 ~~~~~~v~~~~-~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+++..... ...+..+......+++++++...- + -...|+.+|.+.+.+.+.+
T Consensus 155 --~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~-~---------------------~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 155 --SLHDYVSNTENRALRELVAECGGRVCAFDNRATG-R---------------------EQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp --CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCH-H---------------------HHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCc-c---------------------ccHHHHHHHHHHHHHHHHH
Confidence 223322210 011222222234567777665420 0 0126788888888888764
No 39
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=7.3e-15 Score=160.31 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=106.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------------chhh-----------ccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------------EEQQ-----------RCE 418 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------------~~~~-----------~~~ 418 (921)
..++|+|+|.+|+|||||+|+|+|.++.|.+...+|..++.++...... .+.. +..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999988766655555554332211000 0000 000
Q ss_pred c----cCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEE-EEEeCCCCCCHHHH-HH
Q 002437 419 R----HPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVL-FVISADRPLTESEV-VF 483 (921)
Q Consensus 419 ~----~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il-~V~da~~~~t~~e~-~~ 483 (921)
. .....+......+....+.||||||+... .......+..|+..+|.++ +|+|++.+.+..+. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0 00000111111122247999999998531 1256678888998888665 79999887766664 57
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+...+.|+++|+||+|+........ +.+...+. .+.....+++++||+++
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~---~~~~~~~~-~~~~~~~~v~~~SA~~~ 237 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLL-PLRRGYIGVVNRSQKDI 237 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCCCH---HHHTTCSS-CCTTCEEECCCCCCBCT
T ss_pred HHHhCCCCCeEEEEEEccccCCCCchHH---HHHhCCcC-cCCCCcEEEECCChhhc
Confidence 7888778899999999999986432111 11111100 01111247889999887
No 40
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.60 E-value=1.4e-14 Score=142.58 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++..+.. ..||.. ........ .+ ..+.+|||||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt~G 53 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ISFTVWDVGG 53 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSS-CCEEEEEC-------------SS-----------CEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccCcCc-eeEEEEEE-------------CC-----------EEEEEEEcCC
Confidence 479999999999999999999876532 334333 11111100 00 2489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. .....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.....
T Consensus 54 ~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~- 127 (164)
T 1r8s_A 54 QD----KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG- 127 (164)
T ss_dssp CG----GGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTT-
T ss_pred Ch----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-CHHHHHHHhC-
Confidence 74 3455677889999999999999987554443 34444432 368999999999997542 2222222211
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.........+++++||+++ .|++++.+.+.+.+.
T Consensus 128 --~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 128 --LHSLRHRNWYIQATCATSG---------------------------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp --GGGCSSCCEEEEECBTTTT---------------------------BTHHHHHHHHHHHC-
T ss_pred --cccccCccEEEEEcccCCC---------------------------cCHHHHHHHHHHHHh
Confidence 1112223467999999987 688888888877654
No 41
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.60 E-value=3.2e-15 Score=167.79 Aligned_cols=173 Identities=18% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhc--------------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQR-------------------------- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~-------------------------- 416 (921)
..+.|+|+|.+|+|||||+|+|+|.+++|.+...+|..++.+.+..........
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999888877766553321110000
Q ss_pred -----ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEEEEEeCCC-C-CCHHH
Q 002437 417 -----CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVLFVISADR-P-LTESE 480 (921)
Q Consensus 417 -----~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il~V~da~~-~-~t~~e 480 (921)
........+...+..+...+++||||||+... ......++..|+..+|++|+|+|+.+ . .+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00001111222222333457999999998643 23446788899999999999998643 2 23444
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 481 ~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
..+++.+...+.|+++|+||+|+........+ . +.........+++++|++.+..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~---~----~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVE---I----LEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHH---H----HTTSSSCCSSCCEEECCCCHHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHH---H----HcCccccccCCeEEEEECChHH
Confidence 66778888888999999999999865322111 1 1111222346788999988644
No 42
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.60 E-value=4.7e-15 Score=161.90 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=110.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...|+++|++|+|||||+|+|+|.++...+..| ||.......+.. ++ ..+.++||
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-------------~~-----------~~i~~iDT 63 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-------------GA-----------YQAIYVDT 63 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-------------TT-----------EEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-------------CC-----------eeEEEEEC
Confidence 357999999999999999999999875444333 443221111100 00 14899999
Q ss_pred CCCC-hhhhH----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTN-VILQR----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~-~~~~~----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||+. ..... ....+..++..+|++++|+|+++ ++..+..+++.+...+.|+++|+||+|+......+.+....
T Consensus 64 pG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~- 141 (301)
T 1ega_A 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQF- 141 (301)
T ss_dssp SSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHH-
T ss_pred cCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHH-
Confidence 9986 22111 11223456789999999999988 88888878888877789999999999998633333222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.++ ...++++||+.+ .|++.|.+.+.+.+.+
T Consensus 142 ---l~~~~~--~~~~i~iSA~~g---------------------------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 142 ---LASQMN--FLDIVPISAETG---------------------------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp ---HHTTSC--CSEEEECCTTTT---------------------------TTHHHHHHHHHTTCCB
T ss_pred ---HHHhcC--cCceEEEECCCC---------------------------CCHHHHHHHHHHhCCc
Confidence 222222 247999999887 6888998888877654
No 43
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.60 E-value=1.7e-15 Score=161.56 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=110.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+... + ..+.||||
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-------------~-----------~~~~l~Dt 59 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-------------G-----------YTINLIDL 59 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-------------T-----------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-------------C-----------eEEEEEEC
Confidence 35789999999999999999999987654444445544333322110 1 25899999
Q ss_pred CCCChhhh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.+... ....++..++ ..+|++++|+|+++. .....++.++.+.+.|+++|+||+|+.... .... . .
T Consensus 60 pG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~-~i~~---~-~ 132 (258)
T 3a1s_A 60 PGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKT-GMKI---D-R 132 (258)
T ss_dssp CCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHT-TCCB---C-H
T ss_pred CCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCcc-chHH---H-H
Confidence 99875432 2334556666 689999999999874 456667788888899999999999975321 0000 0 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...++ .+++++||+.+ .|+++|.+.+.+.+.
T Consensus 133 ~~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 133 YELQKHLG---IPVVFTSSVTG---------------------------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHC---SCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CCEEEEEeeCC---------------------------cCHHHHHHHHHHHhh
Confidence 12222233 68999999987 688888888877654
No 44
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.60 E-value=1.5e-14 Score=155.31 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=107.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+.. + ..+.+|||
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~------------------------~~l~l~Dt 56 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N------------------------KDLEIQDL 56 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C------------------------TTEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C------------------------CeEEEEEC
Confidence 3579999999999999999999998755555544554433332221 1 25899999
Q ss_pred CCCChhh--hHHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVIL--QRQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~--~~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.+.. .....++..++. .+|++++|+|+++. +....++.++.+.+.|+++|+||+|+.... ....- .
T Consensus 57 pG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~-~~~~~----~ 129 (272)
T 3b1v_A 57 PGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQ-GKKIN----V 129 (272)
T ss_dssp CCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHT-TCCCC----H
T ss_pred CCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcC-CcHHH----H
Confidence 9987543 123445666664 69999999999863 445566677777889999999999975210 00000 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...++ .+++++||+++ .|++++.+.+.+.+.
T Consensus 130 ~~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 130 DKLSYHLG---VPVVATSALKQ---------------------------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHT---SCEEECBTTTT---------------------------BSHHHHHHHHHHSCT
T ss_pred HHHHHHcC---CCEEEEEccCC---------------------------CCHHHHHHHHHHHHh
Confidence 11222233 68999999987 678888777776654
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.2e-15 Score=149.65 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=103.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEE-EccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFL-RFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.+....+|+...... .+.. ++.. ..+.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~~~ 65 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-------------DGVK---------VKLQMW 65 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-------------CCEE---------EEEEEE
Confidence 3468999999999999999999999887655555555422111 1110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||. +.+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 66 Dt~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 141 (180)
T 2g6b_A 66 DTAGQ----ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEK 141 (180)
T ss_dssp ECCCC------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred eCCCc----HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHH
Confidence 99996 34456678888999999999999876543332 34444443 5689999999999975321 1122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. ..+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 142 LAK-----EY---GLPFMETSAKTG---------------------------LNVDLAFTAIAKELK 173 (180)
T ss_dssp HHH-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----Hc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 12 357999999887 688888888877665
No 46
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=2.7e-15 Score=173.64 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=116.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.+....+ ..+||.......+.. ++ ..+.||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~l~ 248 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-------------NQ-----------QEFVIV 248 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-------------TT-----------EEEEET
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-------------CC-----------ceEEEE
Confidence 35789999999999999999999988644333 333443321111110 11 248999
Q ss_pred eCCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHH
Q 002437 441 DTPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEE 512 (921)
Q Consensus 441 DTPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~ 512 (921)
||||+... .+.+.. ....++..+|++|+|+|++++.+..+..++..+...+.|+++|+||||+.... ...++
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~ 328 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKE 328 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHH
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHH
Confidence 99996321 233322 24457899999999999999999999999999988999999999999998542 23455
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+.+.+.+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 329 ~~~~~~~~~~~~---~~~~~~~~SA~~g---------------------------~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 329 FEENIRDHFQFL---DYAPILFMSALTK---------------------------KRIHTLMPAIIKASE 368 (456)
T ss_dssp HHHHHHHHCGGG---TTSCEEECCTTTC---------------------------TTGGGHHHHHHHHHH
T ss_pred HHHHHHHhcccC---CCCCEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 555555443322 3578999999987 678888887776654
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.59 E-value=5.4e-15 Score=148.11 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+........+.......+... +.. ..+.+|||
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----------~~~~i~Dt 68 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN------------DAT----------VKFEIWDT 68 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET------------TEE----------EEEEEEEC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC------------CEE----------EEEEEEeC
Confidence 45899999999999999999999887654322221211111111000 000 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhhc---CCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQW---KKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~~---~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||.. .+...+..++..+|++|+|+|++++.+..+ ..++..+... +.|+++|+||+|+..... ..+++.+..
T Consensus 69 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 144 (181)
T 2efe_B 69 AGQE----RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYA 144 (181)
T ss_dssp CCSG----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred CCCh----hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHH
Confidence 9974 333456778899999999999987655333 3455555543 678999999999975321 122222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. . ...+++++||+.+ .|++++.+.|.+.+..
T Consensus 145 ~----~----~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 145 Q----E----NGLFFMETSAKTA---------------------------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp H----H----TTCEEEECCSSSC---------------------------TTHHHHHHHHHHTCC-
T ss_pred H----H----cCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1 1 2468999999887 6899999998887663
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.59 E-value=1e-14 Score=145.47 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=103.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...|++. .+....+.. ++.. ..+.+||
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D 62 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEV-------------DGHF---------VTMQIWD 62 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 45899999999999999999999876543 2233332 111111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+++
T Consensus 63 t~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 138 (177)
T 1wms_A 63 TAGQE----RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 138 (177)
T ss_dssp CCCCG----GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH
T ss_pred CCCch----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHH
Confidence 99973 3455677889999999999999876543332 24444332 467999999999997432222333
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... . ....+++++||+.+ .|++++.+.+.+.+.
T Consensus 139 ~~~~~----~---~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 139 QAWCR----D---NGDYPYFETSAKDA---------------------------TNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHH----H---TTCCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHH----h---cCCceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 32222 1 13478999999987 688888888876654
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=4.1e-15 Score=153.42 Aligned_cols=160 Identities=14% Similarity=0.251 Sum_probs=101.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+.+......+..+....+.. ++.. ..+.|||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D 75 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-------------NGKK---------VKLQLWD 75 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 45789999999999999999999988764432222222222211110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++.....
T Consensus 76 t~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 151 (213)
T 3cph_A 76 TAGQER----FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 151 (213)
T ss_dssp CTTGGG----GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH
T ss_pred CCCcHH----HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH
Confidence 999642 334467788999999999999875443332 34444443 3689999999999953321222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+ ..+++++||+.+ .|++++...|.+.+.
T Consensus 152 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 -----KEL---GIPFIESSAKND---------------------------DNVNEIFFTLAKLIQ 181 (213)
T ss_dssp -----HHH---TCCEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred -----HHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 112 257999999887 577777777766554
No 50
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=7.5e-15 Score=169.06 Aligned_cols=143 Identities=28% Similarity=0.315 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|++.+....+ ..++|.+........ +| ..+.+||||
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-------------~~-----------~~~~l~DT~ 57 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-------------YG-----------KTFKLVDTC 57 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-------------TT-----------EEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-------------CC-----------eEEEEEECC
Confidence 58999999999999999999998754333 333444332211110 11 248899999
Q ss_pred CCCh-----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNV-----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~-----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+.. ..+.....+..+++.||++|+|+|+..+.+..+..+...++..++|+++|+||+|+... .. ....
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~---~~---~~~~ 131 (439)
T 1mky_A 58 GVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FE---REVK 131 (439)
T ss_dssp TTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HH---HHTH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc---cH---HHHH
Confidence 9853 13445667888999999999999999989888877777777788999999999997421 00 1110
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.. ++ ..+++++||+.+
T Consensus 132 ~~~~~-lg--~~~~~~iSA~~g 150 (439)
T 1mky_A 132 PELYS-LG--FGEPIPVSAEHN 150 (439)
T ss_dssp HHHGG-GS--SCSCEECBTTTT
T ss_pred HHHHh-cC--CCCEEEEeccCC
Confidence 11111 22 236899999987
No 51
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.59 E-value=2.8e-15 Score=149.78 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=102.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|.+|+|||||+|+|.+...... ...++|..+....... ++ ..+.++|
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~D 58 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-------------DG-----------MPLHIID 58 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-------------CC-----------eEEEEEE
Confidence 457899999999999999999999865322 2333443322111110 11 1378999
Q ss_pred CCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+........ ..+..++..+|++++|+|++++.+.....++..+.. .+.|+++|+||+|+.....
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------ 132 (172)
T 2gj8_A 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------ 132 (172)
T ss_dssp CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------
Confidence 999854321111 123456789999999999988776555556555544 3589999999999853210
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+......+++++||+++ .|++++.+.+.+.+.
T Consensus 133 --------~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 --------GMSEVNGHALIRLSARTG---------------------------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp --------EEEEETTEEEEECCTTTC---------------------------TTHHHHHHHHHHHC-
T ss_pred --------hhhhccCCceEEEeCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 011113468999999987 688898888887764
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=151.69 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+.......+.. ++.. ..+.++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D 64 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-------------NGEK---------VKLQIWD 64 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-------------CCEE---------EEEEEEc
Confidence 45689999999999999999999998765433333332222211111 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+... ..|+++|+||+|+..... ..++.....
T Consensus 65 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 140 (181)
T 3tw8_B 65 TAGQE----RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA 140 (181)
T ss_dssp ETTGG----GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCCch----hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH
Confidence 99963 2334466788999999999999986544443 255555443 479999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 141 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 141 -----GQM---GIQLFETSAKEN---------------------------VNVEEMFNCITELVL 170 (181)
T ss_dssp -----HHH---TCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 112 368999999987 688898888887765
No 53
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=99.59 E-value=3.3e-15 Score=154.69 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=123.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe-------cCcHHHHHhCCCCeEEcCCCCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI-------AERVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv-------nd~~dla~~~~a~GvHL~~~~l~ 170 (921)
.++.+.++++.++|+++||+|.++.+. .+.++++|+. +..++| |++++.|.++||||||+++.+.+
T Consensus 19 ~~~~~~~~~~~~~G~~~i~l~~~~~~~------~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~~~~~ 92 (212)
T 2v82_A 19 DEALAHVGAVIDAGFDAVEIPLNSPQW------EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSE 92 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTSTTH------HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSSCCHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCChhH------HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 377888999999999999999997654 2455666766 778888 89999999999999999987766
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCC--CCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVK--IPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~--~Pv~aiGGi~~~ 247 (921)
....++.+| .. . ++| |||++++..| ...|+||+++-|- ...|+. ..++++..+ +||+|+|||+++
T Consensus 93 ~~~~~~~~g---~~-~---~~g--~~t~~e~~~a-~~~G~d~v~v~~t--~~~g~~~~~~l~~~~~~~ipvia~GGI~~~ 160 (212)
T 2v82_A 93 VIRRAVGYG---MT-V---CPG--CATATEAFTA-LEAGAQALKIFPS--SAFGPQYIKALKAVLPSDIAVFAVGGVTPE 160 (212)
T ss_dssp HHHHHHHTT---CE-E---ECE--ECSHHHHHHH-HHTTCSEEEETTH--HHHCHHHHHHHHTTSCTTCEEEEESSCCTT
T ss_pred HHHHHHHcC---CC-E---Eee--cCCHHHHHHH-HHCCCCEEEEecC--CCCCHHHHHHHHHhccCCCeEEEeCCCCHH
Confidence 666666665 33 1 455 8999999999 8999999998442 123454 567777775 999999999999
Q ss_pred ChHHHHHcCCcEEEEeeccccc
Q 002437 248 DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+.++.++||+||++.++.++.
T Consensus 161 ~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 161 NLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp THHHHHHHTCSEEEECTTTCCT
T ss_pred HHHHHHHcCCCEEEEChHHhCC
Confidence 9999999999999988887664
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=151.55 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=104.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......++.......+.. ++.. ..+.|+||
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 72 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 72 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999988765433333332222221111 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .++...
T Consensus 73 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-- 146 (196)
T 3tkl_A 73 AGQE----RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE-- 146 (196)
T ss_dssp CCSG----GGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH--
T ss_pred CCcH----hhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHH--
Confidence 9964 3344577788999999999999875443332 34444433 36899999999999754211 112111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 147 ---~~~~~---~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 147 ---FADSL---GIPFLETSAKNA---------------------------TNVEQSFMTMAAEIK 178 (196)
T ss_dssp ---HHHHT---TCCEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ---HHHHc---CCcEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11222 368999999987 688888887776655
No 55
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=149.43 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=106.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.........+|+. +....+.. ++ ..+.+|||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~l~Dt 74 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKS-------------SS-----------LSFTVFDM 74 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEEC-------------SS-----------CEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 5689999999999999999999998744444445443 22211110 01 25899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+
T Consensus 75 ~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~ 149 (190)
T 2h57_A 75 SGQGRY----RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA-VTSVKVSQ 149 (190)
T ss_dssp CCSTTT----GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC-CCHHHHHH
T ss_pred CCCHHH----HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC-CCHHHHHH
Confidence 997432 34466788999999999999876433332 33443332 46899999999999754 22233333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. + ..+.....+++++||+++ .|++++.+.|.+.+.
T Consensus 150 ~~~--~-~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 150 LLC--L-ENIKDKPWHICASDAIKG---------------------------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp HHT--G-GGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHC-
T ss_pred HhC--h-hhccCCceEEEEccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 221 0 112223568999999987 689999988887764
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=3.1e-15 Score=147.89 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=102.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|+|++..+.+ ...|++. ......+.. ++.. ..+.++||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~ 59 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTI-------------NEHT---------VKFEIWDT 59 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4789999999999999999999887543 2233322 111111110 0100 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH--H--HHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF--E--LEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~--~--~~~v~ 514 (921)
||... +...+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... + .++..
T Consensus 60 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~ 135 (170)
T 1ek0_A 60 AGQER----FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE 135 (170)
T ss_dssp CCSGG----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH
T ss_pred CCChh----hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH
Confidence 99743 334577888999999999999976544443 34444443 4679999999999874310 1 11111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~-----~~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 136 K-----LAEEK---GLLFFETSAKTG---------------------------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp H-----HHHHH---TCEEEECCTTTC---------------------------TTHHHHHHHHHTTSC
T ss_pred H-----HHHHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 11112 368999999987 688888888877654
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.58 E-value=1e-14 Score=149.43 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+....... ++.. ..+.|||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 63 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYR-------------NDKR---------IKLQIWD 63 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEE-------------CCeE---------EEEEEEE
Confidence 458999999999999999999999876432 222221 111111100 1100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 64 t~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (203)
T 1zbd_A 64 TAGLE----RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 139 (203)
T ss_dssp ECCSG----GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred CCCch----hhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 99974 4456688899999999999999876543333 34555544 4689999999999975311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ..+ ..+++++||+.+ .|++++.+.|.+.+.
T Consensus 140 ~-----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 140 A-----DHL---GFEFFEASAKDN---------------------------INVKQTFERLVDVIC 170 (203)
T ss_dssp H-----HHH---TCEEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred H-----HHC---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 112 358999999987 577777777766554
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.58 E-value=1.1e-14 Score=143.00 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..+.. ...+++.......... ++.. ..+.++|||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 59 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVI-------------DGET---------CLLDILDTA 59 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 4789999999999999999999876543 2333433221111100 1110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.... ......++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++..+...
T Consensus 60 G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (166)
T 2ce2_X 60 GQEEY----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR 135 (166)
T ss_dssp CCSSC----CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred Cchhh----hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH
Confidence 97532 24566778889999999999875443332 34444433 36899999999998753222222222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 -----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 136 -----SY---GIPYIETSAKTR---------------------------QGVEDAFYTLVREIR 164 (166)
T ss_dssp -----HH---TCCEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred -----Hc---CCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12 357999999887 688888888876653
No 59
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.58 E-value=6.8e-15 Score=145.66 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=100.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..|++. .+....+.. ++.. ..+.+||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~D 61 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK-HITTLGASFLTKKLNI-------------GGKR---------VNLAIWD 61 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS-CCCCCSCEEEEEEEES-------------SSCE---------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC-CCCccceEEEEEEEEE-------------CCEE---------EEEEEEE
Confidence 468999999999999999999998775432 223322 222111111 1110 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++..+.
T Consensus 62 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1z08_A 62 TAGQE----RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 137 (170)
T ss_dssp CCCC-----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----hhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 99963 3445667788999999999999876544433 34444433 568999999999986421 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . ...+++++||+++ .|++++.+.+.+.+.
T Consensus 138 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 138 AE-----S---VGAKHYHTSAKQN---------------------------KGIEELFLDLCKRMI 168 (170)
T ss_dssp HH-----H---TTCEEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----H---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 11 1 2368999999987 688888888876654
No 60
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.58 E-value=5.7e-15 Score=146.10 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=103.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...|+... . ..+.+.. .. ..+.+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~----------~~~~~ 59 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQN--------------EL----------HKFLI 59 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECC--------------eE----------EEEEE
Confidence 45899999999999999999999987543 22333221 1 1111111 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|++++.+..+. .++..+.. ...|+++|+||+|+....+. .++..
T Consensus 60 ~Dt~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~ 135 (170)
T 1z0j_A 60 WDTAGLE----RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135 (170)
T ss_dssp EEECCSG----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EcCCCch----hhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHH
Confidence 9999974 3334567788999999999999876554443 35555543 35689999999999743111 11221
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~~-----~~~---~~~~~~~~Sa~~~---------------------------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 136 DY-----ADS---IHAIFVETSAKNA---------------------------ININELFIEISRRIP 168 (170)
T ss_dssp HH-----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHCC
T ss_pred HH-----HHH---cCCEEEEEeCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 11 111 2368999999987 688888888877654
No 61
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.58 E-value=2.7e-14 Score=159.69 Aligned_cols=174 Identities=19% Similarity=0.283 Sum_probs=105.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------------chhh-----------cc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------------EEQQ-----------RC- 417 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------------~~~~-----------~~- 417 (921)
..+.|+|+|.+|+|||||+|+|+|.++.|.+...+|..++.++....+. .+.. +.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999998877777776665433211100 0000 00
Q ss_pred ---cccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCC-CCEEEEEEeCCCCCCHHHH-HH
Q 002437 418 ---ERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPR-ADLVLFVISADRPLTESEV-VF 483 (921)
Q Consensus 418 ---~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~-aD~il~V~da~~~~t~~e~-~~ 483 (921)
...........+..+...+++||||||+... .+....++..|+.. .++|++|++++..+...+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0000001111111122246999999998532 12456677788854 4577778888876665555 47
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+...+.|+++|+||+|+.....+..+ .+..... .+.....+|+++||+.+
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~-~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLL-PLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCTTCCCHH---HHTTCSS-CCTTCEEECCCCCHHHH
T ss_pred HHHhCcCCCceEEEeccccccCcchhHHH---HHhCCcc-cccCCceEEEeCCcccc
Confidence 78888788999999999999864322111 1111000 01112246888999886
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=144.16 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.........+.+. ....+.+. +.. ..+.++|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------~~~~~~D 58 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD---------------GED---------TTLVVVD 58 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEET---------------TEE---------EEEEEEC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEEC---------------CEE---------EEEEEEe
Confidence 4689999999999999999999998765432222211 11111111 110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|||.... +...+...++..+|++++|+|.+++.+.... .++..+... +.|+++|+||+|+..... ..++...
T Consensus 59 ~~g~~~~--~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 136 (175)
T 2nzj_A 59 TWEAEKL--DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA 136 (175)
T ss_dssp CC---------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred cCCCCcc--chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH
Confidence 9997532 1234556778999999999999876544433 344445443 689999999999975311 1122221
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 137 ~~-----~~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 137 CA-----VVF---DCKFIETSATLQ---------------------------HNVAELFEGVVRQLR 168 (175)
T ss_dssp HH-----HHH---TSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----HHc---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 112 368999999987 688888888877654
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.58 E-value=8.1e-15 Score=144.41 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.++||
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 59 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3589999999999999999999988753 33444444322211110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. +....+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...++....
T Consensus 60 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T 1u8z_A 60 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135 (168)
T ss_dssp CC-------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCcc----hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence 9964 3445677888999999999999876543332 33444432 368999999999986431 112233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~~~-----~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 136 ADQ-----W---NVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 166 (168)
T ss_dssp HHH-----H---TCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----c---CCeEEEeCCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 368999999987 688888888876653
No 64
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.58 E-value=1.1e-14 Score=147.35 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eE---EEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-IT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...+|... +. .+.+...... ....+.. ..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~---------~~~~ 73 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDG------AVGRGQR---------IHLQ 73 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCC------SSCCCEE---------EEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCccc------ccccCcE---------EEEE
Confidence 46899999999999999999999876543 22333221 11 1111111000 0000000 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
++||||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++
T Consensus 74 l~Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 149 (195)
T 3bc1_A 74 LWDTAGLE----RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEE 149 (195)
T ss_dssp EEEECCSG----GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEeCCCcH----HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH
Confidence 99999973 4456788899999999999999876554442 35555543 4689999999999864211 1122
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+... .. ..+++++||+.+ .|++++.+.|.+.+.
T Consensus 150 ~~~~~~-----~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 150 ARELAE-----KY---GIPYFETSAANG---------------------------TNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHH-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHH-----Hc---CCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222211 12 358999999886 688888888877654
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=2e-14 Score=145.21 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||+|+|++.+.. ...||... ...+.+ ++ ..+.+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~---------------~~-----------~~~~i~ 65 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSNVEEIVI---------------NN-----------TRFLMW 65 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSSCEEEEE---------------TT-----------EEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccceEEEEE---------------CC-----------EEEEEE
Confidence 35799999999999999999999987653 22233220 001111 11 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.. +....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.+
T Consensus 66 Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~ 140 (187)
T 1zj6_A 66 DIGGQE----SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQ 140 (187)
T ss_dssp ECCC--------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCCH----hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-CHHHHHH
Confidence 999974 3334566788999999999999987655544 34444433 568999999999997531 2233322
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.. ..+.....+++++||+++ .|++++.+.+.+.+..
T Consensus 141 ~~~~---~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 141 FLKL---TSIKDHQWHIQACCALTG---------------------------EGLCQGLEWMMSRLKI 178 (187)
T ss_dssp HHTG---GGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHCC
T ss_pred HhCh---hhhcCCCcEEEEccCCCC---------------------------cCHHHHHHHHHHHHHH
Confidence 2211 112223468999999987 6899999998887654
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=4.9e-15 Score=146.71 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+|+|.+|+|||||+|+|++..+.. ...++.......... .++.. ..+.++||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~~~~~Dt 58 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVIS-------------CDKSI---------CTLQITDT 58 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEE-------------ETTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 45899999999999999999999976542 233333221111000 01110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||... +......++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+....+ ...+...
T Consensus 59 ~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~ 134 (172)
T 2erx_A 59 TGSHQ----FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134 (172)
T ss_dssp CSCSS----CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred CCchh----hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH
Confidence 99753 334566778889999999999875443332 34444433 3689999999999864311 1111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .... ..+++++||+++ .|++++.+.+.+.+..
T Consensus 135 ~-----~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 135 L-----ARTW---KCAFMETSAKLN---------------------------HNVKELFQELLNLEKR 167 (172)
T ss_dssp H-----HHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHTCCS
T ss_pred H-----HHHh---CCeEEEecCCCC---------------------------cCHHHHHHHHHHHHhh
Confidence 1 1111 368999999987 6899999999887653
No 67
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.58 E-value=1e-14 Score=146.98 Aligned_cols=158 Identities=19% Similarity=0.268 Sum_probs=103.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......... ++.. ..+.+|||
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 59 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVI-------------DGET---------CLLDILDT 59 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC-CCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCchheEEEEEEE-------------CCcE---------EEEEEEEC
Confidence 4589999999999999999999987753 33444543322211110 1110 13788999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+......
T Consensus 60 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 135 (189)
T 4dsu_A 60 AGQE----EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 135 (189)
T ss_dssp CCC-------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH
T ss_pred CCcH----HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH
Confidence 9974 3344566778889999999999876443333 23333332 4689999999999975422222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 ~-----~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 R-----SY---GIPFIETSAKTR---------------------------QGVDDAFYTLVREIR 165 (189)
T ss_dssp H-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H-----Hc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 12 367999999987 688888888877665
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.57 E-value=8.5e-15 Score=146.15 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=103.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...+++. ......+.. ++.. ..+.+|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 69 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEV-------------SGQK---------IKLQIW 69 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEE-------------CCeE---------EEEEEE
Confidence 346899999999999999999999887642 2233322 111111100 0100 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..+
T Consensus 70 Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 145 (179)
T 1z0f_A 70 DTAGQE----RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ 145 (179)
T ss_dssp ECTTGG----GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCCh----HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence 999963 3345677888999999999999876544433 24444433 5689999999999863211 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 146 ~~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 146 FAE----E----NGLLFLEASAKTG---------------------------ENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHC
T ss_pred HHH----H----cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 221 1 2468999999987 688888888776654
No 69
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=149.90 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..++.. ......+.. ++.. ..+.+||
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~D 81 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVEL-------------RGKK---------IRLQIWD 81 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 457899999999999999999999875432 222221 221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... ..++....
T Consensus 82 t~G~~----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 82 TAGQE----RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp ECCSG----GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99973 3455677888999999999999876554443 2334443 34689999999999864211 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+ ...+++++||+++ .|++++.+.|.+.+.
T Consensus 158 -----~~~~--~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 158 -----AQQI--TGMRFCEASAKDN---------------------------FNVDEIFLKLVDDIL 189 (192)
T ss_dssp -----HHTS--TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHhc--CCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2478999999987 688888888776554
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.57 E-value=6.3e-15 Score=145.04 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=101.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+.. ...+++.......... ++.. ..+.++|||
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 59 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEV-------------DSSP---------SVLEILDTA 59 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEECC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 5799999999999999999999876543 3334443222111110 1110 138899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. ........++..+|++++|+|..++.+..+. .++..+ ...+.|+++|+||+|+....+ ..++.....
T Consensus 60 G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T 1kao_A 60 GTE----QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA 135 (167)
T ss_dssp CTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred Cch----hhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH
Confidence 974 2344567788899999999999875443333 233333 234789999999999864211 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 136 -----EEW---GCPFMETSAKSK---------------------------TMVDELFAEIVRQMN 165 (167)
T ss_dssp -----HHH---TSCEEEECTTCH---------------------------HHHHHHHHHHHHHHH
T ss_pred -----HHh---CCCEEEecCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 112 357999999987 678888887776543
No 71
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.57 E-value=2.4e-14 Score=152.98 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC--ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~--tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++....+.+..| +|.......... ++ ..+.||
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~i~ii 76 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-------------GN-----------REIVII 76 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-------------CC-----------CEEEEE
Confidence 5689999999999999999999999876655554 343322211110 11 258999
Q ss_pred eCCCCChhhh-------HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-----CCeEEEEEe-CCCCCCC
Q 002437 441 DTPGTNVILQ-------RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-----KKKVVFVLN-KSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~-------~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-----~~~vivVlN-K~D~~~~ 506 (921)
||||+..... .....+..+++.+|++|+|+|+++ ++..+..++..+.+. ..|+++|+| |+|+...
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 9999864321 113344557899999999999986 677776666666553 567777777 9999743
No 72
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.57 E-value=7.5e-15 Score=144.76 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=101.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..+. ....||+.......+.. .... ..+.++|||
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~~~l~D~~ 59 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEV------------DCQQ----------CMLEILDTA 59 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEES------------SSCE----------EEEEEEEEC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEE------------CCEE----------EEEEEEECC
Confidence 478999999999999999999987653 33344443222111110 0111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.... ......++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... ..++.....
T Consensus 60 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T 1c1y_A 60 GTEQF----TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA 135 (167)
T ss_dssp SSCSS----TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ChHHH----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH
Confidence 97533 23566777889999999999875433332 2333333 24789999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. + ...+++++||+++ .|++++.+.+.+.+
T Consensus 136 ----~~-~--~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 136 ----RQ-W--CNCAFLESSAKSK---------------------------INVNEIFYDLVRQI 165 (167)
T ss_dssp ----HH-T--TSCEEEECBTTTT---------------------------BSHHHHHHHHHHHH
T ss_pred ----HH-c--cCCcEEEecCCCC---------------------------CCHHHHHHHHHHHH
Confidence 11 1 2478999999987 68888888887665
No 73
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.57 E-value=1.3e-14 Score=145.95 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=101.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.++ ....+|... ...+.+ ++ ..+.+||
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~---------------~~-----------~~~~i~D 71 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEIVI---------------NN-----------TRFLMWD 71 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSCEEEEE---------------TT-----------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceeeEEEEE---------------CC-----------EEEEEEE
Confidence 468999999999999999999999875 122222210 001111 11 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||... ....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ..+++.+.
T Consensus 72 t~G~~~----~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~ 146 (181)
T 2h17_A 72 IGGQES----LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQF 146 (181)
T ss_dssp ESSSGG----GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHH
T ss_pred CCCCHh----HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-CHHHHHHH
Confidence 999843 334567788999999999999987665544 3444443 2568999999999997531 22233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
+. .........+++++||+++ .|++++.+.|.+
T Consensus 147 ~~---~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~ 179 (181)
T 2h17_A 147 LK---LTSIKDHQWHIQACCALTG---------------------------EGLCQGLEWMMS 179 (181)
T ss_dssp TT---GGGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHT
T ss_pred hC---cccccCCceEEEEccCCCC---------------------------cCHHHHHHHHHh
Confidence 21 0111223458999999987 688888877764
No 74
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.57 E-value=6.8e-15 Score=169.25 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=91.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|........ .++|.+......... + ..+.+|||
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-------------~-----------~~~~l~DT 58 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------------N-----------YDFNLIDT 58 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-------------S-----------SCCEEEC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-------------C-----------ceEEEEEC
Confidence 3689999999999999999999987653333 334444333222111 1 25899999
Q ss_pred CCCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.. ........+..++..||++|||+|+..+.+..+..+...++..++|+++|+||+|+.....+
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~--------- 129 (436)
T 2hjg_A 59 GGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN--------- 129 (436)
T ss_dssp --------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C---------
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh---------
Confidence 99852 22355666788889999999999999999988888888888889999999999998743111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+++.....+++++||+.+
T Consensus 130 --~~~~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 130 --IYDFYSLGFGEPYPISGTHG 149 (436)
T ss_dssp --CCSSGGGSSCCCEECBTTTT
T ss_pred --HHHHHHcCCCCeEEEeCcCC
Confidence 11122212236899999987
No 75
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.57 E-value=1.2e-14 Score=156.81 Aligned_cols=152 Identities=21% Similarity=0.309 Sum_probs=91.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
..++|+++|.+|+|||||+|+|++.+..+.+.. ..|..+...... ...+|.. -.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~~---------~~ 66 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL-----------IKEGGVQ---------LL 66 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEE-----------ECC--CC---------EE
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEE-----------EecCCeE---------EE
Confidence 358999999999999999999999887765542 111111111110 0011110 14
Q ss_pred cEEEeCCCCChh---hhHHHHHH-------HHhcC-------------CCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCC
Q 002437 437 MIIVDTPGTNVI---LQRQQRLT-------EEFVP-------------RADLVLFVISAD-RPLTESEVVFLRYTQQWKK 492 (921)
Q Consensus 437 l~lvDTPG~~~~---~~~~~~~~-------~~~l~-------------~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~ 492 (921)
++||||||++.. ......+. ..|+. ++|+++|+++.. .+....+..+++.+.. +.
T Consensus 67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~ 145 (274)
T 3t5d_A 67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KV 145 (274)
T ss_dssp EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TS
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cC
Confidence 899999998422 11112222 33332 378999999665 4788899999999988 89
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 493 KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 493 ~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|+++|+||+|+.. ..+.....+.+.+.+.. ...+++++|++.+
T Consensus 146 pvi~V~nK~D~~~-~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~ 188 (274)
T 3t5d_A 146 NIIPLIAKADTLT-PEECQQFKKQIMKEIQE----HKIKIYEFPETDD 188 (274)
T ss_dssp CEEEEESSGGGSC-HHHHHHHHHHHHHHHHH----TTCCCCCC-----
T ss_pred CEEEEEeccCCCC-HHHHHHHHHHHHHHHHH----cCCeEEcCCCCCC
Confidence 9999999999974 45555555555554433 3567899998765
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.4e-14 Score=146.99 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+....+.. ++.. ..+.|||
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D 70 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE-LAATIGVDFKVKTISV-------------DGNK---------AKLAIWD 70 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCccceEEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 357999999999999999999998876432 233321 111111110 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. ...|+++|+||+|+.......++....
T Consensus 71 t~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (195)
T 1x3s_A 71 TAGQER----FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF 146 (195)
T ss_dssp ECSSGG----GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred CCCchh----hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence 999743 334567788999999999999876444333 34555544 357999999999995432222333222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
... ...+++++||+.+ .|++++.+.+.+.+..
T Consensus 147 ~~~--------~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 147 ARK--------HSMLFIEASAKTC---------------------------DGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHH--------TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHHT
T ss_pred HHH--------cCCEEEEecCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 221 2468999999887 6888888888777654
No 77
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.56 E-value=1.4e-14 Score=143.12 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=102.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.+.. .++.. .. ..+.+.. .. ..+.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~----------~~~~~ 59 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDD--------------TT----------VKFEI 59 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECC--------------EE----------EEEEE
Confidence 3579999999999999999999987654322 22211 11 1111110 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
+||||... ....+..++..+|++|+|+|++++.+..+. .++..+.. ...|+++|+||+|+.... ...++..
T Consensus 60 ~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~ 135 (170)
T 1r2q_A 60 WDTAGQER----YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135 (170)
T ss_dssp EEECCSGG----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EeCCCcHH----hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHH
Confidence 99999743 334567788999999999999876543332 34555543 357899999999986421 1122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... . ...+++++||+++ .|++++.+.|.+.+.
T Consensus 136 ~~~~----~----~~~~~~~~Sa~~g---------------------------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 136 SYAD----D----NSLLFMETSAKTS---------------------------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp HHHH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHTSC
T ss_pred HHHH----H----cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 2211 1 2468999999987 688898888877654
No 78
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.56 E-value=1.6e-14 Score=145.45 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.+||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D 65 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-------------GGKY---------VKLQIWD 65 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 34689999999999999999999988764432222221221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ...++....
T Consensus 66 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 66 TAGQE----RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp ECCSG----GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99973 4456688899999999999999876543333 2444333 3568999999999986321 111222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ....+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~--------~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 142 AQ--------ENELMFLETSALTG---------------------------ENVEEAFVQCARKIL 172 (186)
T ss_dssp HH--------HTTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH--------HcCCEEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12478999999987 678888777766554
No 79
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.3e-14 Score=147.51 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=105.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...++... ...+.+.. .. ..+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~----------~~~~ 75 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGN--------------EL----------HKFL 75 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSS--------------SE----------EEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCC--------------EE----------EEEE
Confidence 356899999999999999999999877532 22233221 11111110 11 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
||||||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...+++
T Consensus 76 i~Dt~G~~~----~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~ 151 (192)
T 2fg5_A 76 IWDTAGQER----FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDA 151 (192)
T ss_dssp EEEECCSGG----GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEcCCCchh----hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHH
Confidence 999999743 334566788999999999999876554443 34555544 368999999999986421 112222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.. . ....+++++||+.+ .|++++.+.|.+.+.+
T Consensus 152 ~~~~----~----~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 152 KEYA----E----SIGAIVVETSAKNA---------------------------INIEELFQGISRQIPP 186 (192)
T ss_dssp HHHH----H----TTTCEEEECBTTTT---------------------------BSHHHHHHHHHHTCC-
T ss_pred HHHH----H----HcCCEEEEEeCCCC---------------------------cCHHHHHHHHHHHHHh
Confidence 2221 1 12478999999987 7899999999887653
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.56 E-value=3.1e-14 Score=144.05 Aligned_cols=158 Identities=18% Similarity=0.265 Sum_probs=97.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...+++.......+.. ++.. ..+.||||
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 76 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVI-------------DGET---------CLLDILDT 76 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 35799999999999999999999876542 3334443221111110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+++.+..
T Consensus 77 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 152 (190)
T 3con_A 77 AGQE----EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152 (190)
T ss_dssp CC---------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH
T ss_pred CChH----HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH
Confidence 9963 3455677889999999999999876544433 23444433 3689999999999875322223332222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. + ..+++++||+++ .|++++.+.+.+.+.
T Consensus 153 ~~-----~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 153 KS-----Y---GIPFIETSAKTR---------------------------QGVEDAFYTLVREIR 182 (190)
T ss_dssp HH-----H---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH-----c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 2 257999999987 688888888877665
No 81
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.56 E-value=9.9e-15 Score=146.74 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=107.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......... ++.. ..+.+|||
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 60 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWDT 60 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3579999999999999999999987653 33444443322111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||... .......++..+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 61 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (186)
T 1mh1_A 61 AGQED----YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136 (186)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred CCCHh----HHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccccc
Confidence 99843 334566788999999999999876555544 355566543 7899999999999765322221111
Q ss_pred -----HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 -----FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 -----~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.....+....+ ..+++++||+++ .|++++.+.+.+.+..
T Consensus 137 ~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 137 TPITYPQGLAMAKEIG--AVKYLECSALTQ---------------------------RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CCCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHhcC--CcEEEEecCCCc---------------------------cCHHHHHHHHHHHHhc
Confidence 00111111122 248999999987 6899999998887764
No 82
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.56 E-value=4.8e-14 Score=145.70 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=83.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...+++.....+.+.... + ..+.+|||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------------~-----------~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNR------------G-----------NSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC-BCCCCSCEEEEEECSSTT------------C-----------CEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCcceeeEEEEecCCC------------c-----------cEEEEEEC
Confidence 56899999999999999999999877533 233344333333222110 0 24899999
Q ss_pred CCCChhhhHHHH-HHHHhcCCCCEEEEEEeCCCCCC--HHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 443 PGTNVILQRQQR-LTEEFVPRADLVLFVISADRPLT--ESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~~~~-~~~~~l~~aD~il~V~da~~~~t--~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
||.. .... ++..++..+|++|||+|+++... .....++..+ ...+.|+++|+||+|+... ...+.+
T Consensus 62 ~G~~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~ 136 (214)
T 2fh5_B 62 PGHE----SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA-KSAKLI 136 (214)
T ss_dssp CCCH----HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC-CCHHHH
T ss_pred CCCh----hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc-ccHHHH
Confidence 9974 3333 67778999999999999986211 1111223222 1236899999999999754 234445
Q ss_pred HHHHHHHHH
Q 002437 514 ISFVKENTM 522 (921)
Q Consensus 514 ~~~~~~~~~ 522 (921)
.+.+.+.+.
T Consensus 137 ~~~l~~~l~ 145 (214)
T 2fh5_B 137 QQQLEKELN 145 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.56 E-value=1.9e-14 Score=144.04 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|.|++..+... ..|++ ..+....+... .+. ...+.++|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~---------~~~~~l~D 64 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVD------------GDK---------VATMQVWD 64 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCS------------SSC---------CEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCccceEEEEEEEEEc------------CCc---------EEEEEEEE
Confidence 568999999999999999999998775432 22322 22222221111 010 02489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChH--HHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAF--ELE 511 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~--~~~ 511 (921)
|||. +.....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..+
T Consensus 65 t~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~ 140 (182)
T 1ky3_A 65 TAGQ----ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140 (182)
T ss_dssp CC--------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred CCCC----hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence 9996 34455677889999999999999876543333 23444332 4679999999999863311 112
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...... . ....+++++||+.+ .|++++.+.+.+.+.
T Consensus 141 ~~~~~~~----~---~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 141 SAQELAK----S---LGDIPLFLTSAKNA---------------------------INVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHH----H---TTSCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHHHH----h---cCCCeEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222111 1 13478999999987 688888888876654
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=2.3e-14 Score=146.00 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=104.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+.. ...|+.......... .++.. ..+.|||
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~~~l~D 62 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVIS-------------CDKSV---------CTLQITD 62 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEE-------------ECCEE---------EEEEEEe
Confidence 457899999999999999999999876532 233333221111000 01110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|||.. .+......++..+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.......++...
T Consensus 63 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (199)
T 2gf0_A 63 TTGSH----QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA 138 (199)
T ss_dssp CCGGG----SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred CCChH----HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH
Confidence 99964 23456677888999999999998754333322 3333322 35799999999999753222222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
... .+ ..+++++||+.+ .|++++.+.+.+.+...
T Consensus 139 ~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 139 VAQ-----EW---KCAFMETSAKMN---------------------------YNVKELFQELLTLETRR 172 (199)
T ss_dssp HHH-----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHCSSS
T ss_pred HHH-----Hh---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHhhh
Confidence 211 12 368999999987 68999999998887654
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.56 E-value=1.1e-14 Score=149.33 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..+++ ..+....+... +.. ..+.|||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~------------~~~----------~~~~l~D 63 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVD------------DRL----------VTMQIWD 63 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESS------------SCE----------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEEC------------CEE----------EEEEEEe
Confidence 568999999999999999999999876532 23332 22222111110 111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++.
T Consensus 64 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (207)
T 1vg8_A 64 TAGQER----FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA 139 (207)
T ss_dssp ECSSGG----GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH
T ss_pred CCCcHH----HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHH
Confidence 999742 233456778999999999999876443333 23333322 367999999999997432222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... . ....+++++||+.+ .|++++.+.|.+.+.
T Consensus 140 ~~~~~----~---~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 140 QAWCY----S---KNNIPYFETSAKEA---------------------------INVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHH----H---TTSCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHH----h---cCCceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 1 13468999999987 688888888877665
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.56 E-value=6.7e-15 Score=151.28 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|.|++..+. ....+++.......... ++.. ..+.++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D 84 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWD 84 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEEC-------------C-CE---------EEEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEE-------------CCEE---------EEEEEEE
Confidence 35789999999999999999999977653 33445554322211111 1110 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH--
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS-- 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~-- 515 (921)
|||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 85 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 160 (204)
T 4gzl_A 85 TAGLE----DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
T ss_dssp ECCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred CCCch----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccc
Confidence 99974 3334566788999999999999987655554 355566554 7899999999999865332222111
Q ss_pred ------HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 ------FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ------~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.....+...+ ...+++++||+++ .|++++.+.+.+.+
T Consensus 161 ~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 161 LTPITYPQGLAMAKEI--GAVKYLECSALTQ---------------------------RGLKTVFDEAIRAV 203 (204)
T ss_dssp CCCCCHHHHHHHHHHT--TCSEEEECCTTTC---------------------------TTHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHhc--CCcEEEEeeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 0011111112 2357999999987 68888888877653
No 87
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=153.14 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=87.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC--CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV--PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~--~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|+|+|......+.. .+|..+....... ++ ..+.||
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~i~li 83 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-------------KE-----------TELVVV 83 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-------------CC-----------ceEEEE
Confidence 568999999999999999999999987655544 3343332221111 11 258999
Q ss_pred eCCCCChhh-------hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-----hcCCeEEEEEeCCCCCCChH
Q 002437 441 DTPGTNVIL-------QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-----QWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 441 DTPG~~~~~-------~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-----~~~~~vivVlNK~D~~~~~~ 508 (921)
||||+.+.. ......+..+.+.+|++|+|+|+++ ++..+..++..+. ....|+++|+||+|+... .
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-~ 161 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD-T 161 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc-c
Confidence 999986431 2333444555678999999999975 4445666665553 234699999999999754 2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
.+++......+.+..+......+++++++..
T Consensus 162 ~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (239)
T 3lxx_A 162 NLHDYLREAPEDIQDLMDIFGDRYCALNNKA 192 (239)
T ss_dssp ---------CHHHHHHHHHHSSSEEECCTTC
T ss_pred cHHHHHHhchHHHHHHHHHcCCEEEEEECCC
Confidence 3332222211222222222235677777653
No 88
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=9.7e-14 Score=155.37 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=108.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|++......+...+|..+........ + ..+.++|
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~l~D 220 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG-------------Y-----------FRYQIID 220 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET-------------T-----------EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec-------------C-----------ceEEEEe
Confidence 457899999999999999999999987443344455554433221110 1 1489999
Q ss_pred CCCCChhhh-----HHHHHHHHhcCCCCEEEEEEeCCCCC--CHH-HHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHH
Q 002437 442 TPGTNVILQ-----RQQRLTEEFVPRADLVLFVISADRPL--TES-EVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 442 TPG~~~~~~-----~~~~~~~~~l~~aD~il~V~da~~~~--t~~-e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|||+..... -.......+...+|++|+|+|++.+. +.. ...++..+.. .+.|+++|+||+|+... .+++
T Consensus 221 t~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~-~~~~ 299 (357)
T 2e87_A 221 TPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE-ENIK 299 (357)
T ss_dssp CTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH-HHHH
T ss_pred CCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh-HHHH
Confidence 999843211 11223345556799999999987654 433 3456666654 27899999999999743 3333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...... ....+++++||+++ .|++++.+.+.+.+.
T Consensus 300 ~~~~~~~--------~~~~~~~~iSA~~g---------------------------~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 300 RLEKFVK--------EKGLNPIKISALKG---------------------------TGIDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHH--------HTTCCCEECBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHHH--------hcCCCeEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 3322221 12468999999987 799999998887765
No 89
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.56 E-value=9.2e-15 Score=144.29 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=101.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...+|+. ......... ++.. ..+.++|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 60 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQV-------------NDED---------VRLMLWD 60 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEE-------------CCEE---------EEEEEEc
Confidence 46899999999999999999999876543 2233322 211111110 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||.. +....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 61 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T 1z2a_A 61 TAGQE----EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136 (168)
T ss_dssp CTTGG----GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCCcH----hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence 99964 2334466788999999999999875433332 34444443 3789999999999864211 122222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . . ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 137 ~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 137 K----R-L---KLRFYRTSVKED---------------------------LNVSEVFKYLAEKHL 166 (168)
T ss_dssp H----H-H---TCEEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred H----H-c---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 1 2 368999999887 688888888776553
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.56 E-value=1e-14 Score=144.41 Aligned_cols=157 Identities=23% Similarity=0.362 Sum_probs=98.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..........+|.......+.. ++ ..+.+||||
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~i~Dt~ 58 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-------------NG-----------EKFKVVDLP 58 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-------------TT-----------EEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-------------CC-----------cEEEEEECC
Confidence 478999999999999999999997653322222222211111100 01 148999999
Q ss_pred CCChhhh--HHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQ--RQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~--~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+..... ....+...++. .+|++++|+|+.+. .....++..+.+.+.|+++|.||+|+.... ......+
T Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~---- 131 (165)
T 2wji_A 59 GVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSL-GIEIDVD---- 131 (165)
T ss_dssp CCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHT-TCCCCHH----
T ss_pred CcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcccc-ChhhHHH----
Confidence 9864321 22345556654 89999999999863 333456666767789999999999975210 0000011
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+...++ .+++++||+++ .|++++.+.+.+.+
T Consensus 132 ~~~~~~~---~~~~~~SA~~~---------------------------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 132 KLEKILG---VKVVPLSAAKK---------------------------MGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHT---SCEEECBGGGT---------------------------BSHHHHHHHHHHHT
T ss_pred HHHHHhC---CCEEEEEcCCC---------------------------CCHHHHHHHHHHHh
Confidence 1112222 57999999987 68888888877654
No 91
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=146.87 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.||||
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 69 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 69 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEE-------------CCEE---------EEEEEEcC
Confidence 4689999999999999999999988753 34455554332221110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. .+...+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...+++...
T Consensus 70 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (206)
T 2bov_A 70 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145 (206)
T ss_dssp CCTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CChh----hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence 9974 3345677788899999999999876443333 34444433 368999999999986431 112333332
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ..++|++||+++ .|++++...|.+.+.
T Consensus 146 ~~~-----~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 146 AEQ-----W---NVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 176 (206)
T ss_dssp HHH-----H---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----h---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 358999999987 688888888877654
No 92
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.55 E-value=3.7e-14 Score=143.18 Aligned_cols=157 Identities=22% Similarity=0.404 Sum_probs=99.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|+|++..+.......+|.....+.+ ..+.++||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~----------------------------~~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW----------------------------KNHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE----------------------------TTEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec----------------------------CCEEEEECCC
Confidence 689999999999999999999987543322223322222211 1489999999
Q ss_pred CChh-------hhHHHHHHHHh----cCCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 445 TNVI-------LQRQQRLTEEF----VPRADLVLFVISADRPL-----------TESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 445 ~~~~-------~~~~~~~~~~~----l~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
+... .+.....+..+ ...++++++|+|.+... ...+.+++..+...+.|+++|+||+|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (190)
T 2cxx_A 54 FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLD 133 (190)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHh
Confidence 6422 23334444444 44577888998876321 11223344555567899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCC----CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHH
Q 002437 503 LYQNAFELEEAISFVKENTMKLLNIE----NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLY 578 (921)
Q Consensus 503 ~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~ 578 (921)
+.... .+..+.+.. .++.. ..+++++||+++ .|++++.+.+.
T Consensus 134 l~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~ 179 (190)
T 2cxx_A 134 KIKNV---QEVINFLAE----KFEVPLSEIDKVFIPISAKFG---------------------------DNIERLKNRIF 179 (190)
T ss_dssp GCSCH---HHHHHHHHH----HHTCCGGGHHHHEEECCTTTC---------------------------TTHHHHHHHHH
T ss_pred ccCcH---HHHHHHHHH----HhhhhhhccCCcEEEEecCCC---------------------------CCHHHHHHHHH
Confidence 98653 111222222 22321 236899999987 68888888888
Q ss_pred Hhhcc
Q 002437 579 SFLDG 583 (921)
Q Consensus 579 ~~l~~ 583 (921)
+.+.+
T Consensus 180 ~~~~~ 184 (190)
T 2cxx_A 180 EVIRE 184 (190)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 77653
No 93
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.55 E-value=1e-14 Score=145.61 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.... .+++. .+....... ++.. ..+.++|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D 69 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYL-------------EDRT---------VRLQLWD 69 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEE-------------CCeE---------EEEEEEE
Confidence 3479999999999999999999987764332 33322 222111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 70 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (179)
T 2y8e_A 70 TAGQER----FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145 (179)
T ss_dssp ECCSGG----GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcHH----HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence 999743 334566778899999999999875443332 34444432 4689999999999864311 12222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . . ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 146 ~~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 146 AK----E-L---NVMFIETSAKAG---------------------------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HH----H-H---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHTCC
T ss_pred HH----H-c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 21 1 1 368999999887 688898888887664
No 94
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.55 E-value=1.5e-14 Score=148.23 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|.+..+. ....||+......... .++.. ..+.||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 80 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIE-------------VDGKQ---------VELALWDT 80 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEE-------------ETTEE---------EEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 3579999999999999999999987753 3333443221111110 01110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.+.+
T Consensus 81 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (201)
T 2gco_A 81 AGQE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156 (201)
T ss_dssp CCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTC
T ss_pred CCch----hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhccccc
Confidence 9974 2334456788999999999999876544443 355555543 7899999999999865332221110
Q ss_pred -----HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 -----FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 -----~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+...++ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 157 ~~v~~~~~~~~~~~~~--~~~~~~~SA~~g---------------------------~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 157 EPVRSEEGRDMANRIS--AFGYLECSAKTK---------------------------EGVREVFEMATRAGL 199 (201)
T ss_dssp CCCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhCC--CcEEEEeeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 00111111112 237999999987 688888888876543
No 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.55 E-value=5.8e-15 Score=149.47 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+.. .++.. .+....... ++.. ..+.+||
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 77 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYR-------------HDKR---------IKLQIWD 77 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 3579999999999999999999988764322 22221 111111100 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..+.
T Consensus 78 t~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 78 TAGQERY----RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp CCSCCSS----CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCCcHHH----hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 9997432 23466788999999999999875443333 35555554 3689999999999864311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~-----~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 154 AD-----DL---GFEFFEASAKEN---------------------------INVKQVFERLVDVIC 184 (189)
T ss_dssp HH-----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----Hc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12 358999999987 688888888876654
No 96
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.55 E-value=9.3e-15 Score=148.42 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=103.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+|+|.+|+|||||+|+|++..+...........+....... .... ..+.||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~------------~~~~----------~~~~i~ 79 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML------------GTAA----------VKAQIW 79 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE------------TTEE----------EEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE------------CCEE----------EEEEEE
Confidence 345689999999999999999999998765432221111111111100 0000 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 80 Dt~G~~~~----~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 155 (193)
T 2oil_A 80 DTAGLERY----RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARM 155 (193)
T ss_dssp EESCCCTT----CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCchhh----hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHH
Confidence 99998532 34567788999999999999876443332 34555543 3679999999999864211 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+.+ .|++++.+.|.+.+.
T Consensus 156 ~~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 156 FAE-----N---NGLLFLETSALDS---------------------------TNVELAFETVLKEIF 187 (193)
T ss_dssp HHH-----H---TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 1 2468999999887 688888888776654
No 97
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.55 E-value=2.2e-14 Score=144.21 Aligned_cols=158 Identities=21% Similarity=0.218 Sum_probs=104.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 73 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 73 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4689999999999999999999987753 34444544322211110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. .....+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...+++.+.
T Consensus 74 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 149 (187)
T 2a9k_A 74 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149 (187)
T ss_dssp CCTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCc----ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH
Confidence 9974 2345677788899999999999876443332 33444432 368999999999986421 112233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . ...+++++||+++ .|++++.+.|.+.+.
T Consensus 150 ~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 150 AE----Q----WNVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 180 (187)
T ss_dssp HH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH----H----cCCeEEEeCCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 1 2468999999987 688888888877654
No 98
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.54 E-value=1.6e-14 Score=148.33 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=103.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+... ..|++ ..+....+.. ++.. ..+.||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 62 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTIGVDFKIKTVEL-------------DGKT---------VKLQIW 62 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-CCCSSCCCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEE-------------CCEE---------EEEEEE
Confidence 3468999999999999999999998876432 22322 2222111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 63 Dt~G~~~----~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (206)
T 2bcg_Y 63 DTAGQER----FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKE 138 (206)
T ss_dssp CCTTTTT----TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred eCCChHH----HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH
Confidence 9999743 233466788999999999999876544443 24444443 4589999999999975311 1122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .. ...+++++||+.+ .|++++...+.+.+.
T Consensus 139 ~~-----~~---~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 139 FA-----DA---NKMPFLETSALDS---------------------------TNVEDAFLTMARQIK 170 (206)
T ss_dssp HH-----HH---TTCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH-----HH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 11 2368999999887 678888887776655
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.54 E-value=5.8e-15 Score=153.12 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=102.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee-EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI-TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||+|+|++..+. ....+++... ....+.. ..+.. ..+.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~~~---------~~~~l~ 66 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLD------------DQGNV---------IKFNVW 66 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEB------------TTSCE---------EEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEe------------CCCcE---------EEEEEE
Confidence 35689999999999999999999987654 2222332211 1111111 01110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||... .......++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... +..
T Consensus 67 Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~- 137 (218)
T 4djt_A 67 DTAGQEK----KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----ISK- 137 (218)
T ss_dssp EECSGGG----TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------CCH-
T ss_pred ecCCchh----hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCH-
Confidence 9999742 223455678899999999999976554443 2334443 34689999999999875311 111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.....+......+++++||+++ .|++++...+.+.+.+.
T Consensus 138 --~~~~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 138 --KLVMEVLKGKNYEYFEISAKTA---------------------------HNFGLPFLHLARIFTGR 176 (218)
T ss_dssp --HHHHHHTTTCCCEEEEEBTTTT---------------------------BTTTHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHcCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHhcc
Confidence 1112222334578999999987 57888888877776553
No 100
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=2.1e-14 Score=145.96 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+ +....||+......... .++.. ..+.++|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~-------------~~~~~---------~~~~i~D 77 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMK-------------YKNEE---------FILHLWD 77 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEE-------------ECCEE---------EEEEEEE
Confidence 3568999999999999999999998875 33444554332211111 01110 1379999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCCh---HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNA---FELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~---~~~~~v~ 514 (921)
|||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.... ...++..
T Consensus 78 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 153 (194)
T 3reg_A 78 TAGQE----EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD 153 (194)
T ss_dssp ECCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH
T ss_pred CCCcH----HHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH
Confidence 99963 3345577788999999999999987555553 355555543 57999999999987431 1122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.... .++ ...++++||+++ .|++++.+.+.+.+..
T Consensus 154 ~~~~-----~~~--~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 154 DLCQ-----KLG--CVAYIEASSVAK---------------------------IGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHH-----HHT--CSCEEECBTTTT---------------------------BSHHHHHHHHHHHHHC
T ss_pred HHHH-----hcC--CCEEEEeecCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 2211 122 233999999987 6899998888877654
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.54 E-value=1.6e-14 Score=146.07 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=103.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|.+..+.. ..||+. ........ ++ ..+.++||
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~~~Dt 73 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVPTVG-VNLETLQY-------------KN-----------ISFEVWDL 73 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECSSTT-CCEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCCCCc-eEEEEEEE-------------CC-----------EEEEEEEC
Confidence 67999999999999999999998876532 233332 11110000 01 24899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.+..
T Consensus 74 ~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~ 148 (189)
T 2x77_A 74 GGQTGV----RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQL 148 (189)
T ss_dssp CCSSSS----CCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHT
T ss_pred CCCHhH----HHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHh
Confidence 997432 22355678899999999999987665543 33444322 468999999999997542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 149 ~---~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 149 G---VSSIMNRTWTIVKSSSKTG---------------------------DGLVEGMDWLVERLR 183 (189)
T ss_dssp T---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred C---hhhccCCceEEEEccCCCc---------------------------cCHHHHHHHHHHHHH
Confidence 1 1112223458999999887 688888888877665
No 102
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.54 E-value=3e-14 Score=144.91 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.. ..||.. +....... .+ ..+.++||
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt 80 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ICFTVWDV 80 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEEETT-EEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCCcCc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 56899999999999999999999876531 223222 11111100 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+..
T Consensus 81 ~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~ 155 (192)
T 2b6h_A 81 GGQD----KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-MPVSELTDKL 155 (192)
T ss_dssp C---------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHT
T ss_pred CCCH----hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-CCHHHHHHHh
Confidence 9974 2334566788999999999999987554443 34444432 36899999999999754 1222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+++ .|++++.+.+.+.+.
T Consensus 156 ~---~~~~~~~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 156 G---LQHLRSRTWYVQATCATQG---------------------------TGLYDGLDWLSHELS 190 (192)
T ss_dssp T---GGGCSSCCEEEEECBTTTT---------------------------BTHHHHHHHHHHHTT
T ss_pred C---cccccCCceEEEECcCCCc---------------------------CCHHHHHHHHHHHHh
Confidence 1 1112223467999999987 688888888877654
No 103
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=150.15 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=92.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+.......... ++.. ..+.||||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~l~Dt 89 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQV-------------KGKP---------VHLHIWDT 89 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987653 33444443222111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH----
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI---- 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~---- 514 (921)
||.. ........++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+...
T Consensus 90 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 90 AGQD----DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp -------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred CCch----hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccccc
Confidence 9963 4445677788999999999999876554443 35555544 3679999999999986532211110
Q ss_pred -----HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 -----SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 -----~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... .+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 166 ~~v~~~~~~-~~~~~~~--~~~~~~~SA~~g---------------------------~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 166 EPVTYHRGQ-EMARSVG--AVAYLECSARLH---------------------------DNVHAVFQEAAEVAL 208 (214)
T ss_dssp CCCCHHHHH-HHHHHTT--CSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred CcccHHHHH-HHHHhcC--CCEEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 0111 1111122 248999999987 688888888877765
No 104
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.54 E-value=3.8e-14 Score=164.48 Aligned_cols=163 Identities=22% Similarity=0.281 Sum_probs=112.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC------CCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL------KDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~------~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+++|.+++|||||+|+|++.... +.. ....|.......+. .++ .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~~~-----------~ 73 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-------------LEN-----------Y 73 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-------------ETT-----------E
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-------------ECC-----------E
Confidence 3579999999999999999999987611 100 01111111000000 011 2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||. +.+...+..++..+|++|+|+|++++...+..+.+..+...+.|+++|+||+|+.. ++..+.+.+
T Consensus 74 ~i~iiDtPGh----~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-~~~~~~~~~ 148 (482)
T 1wb1_A 74 RITLVDAPGH----ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-TEEIKRTEM 148 (482)
T ss_dssp EEEECCCSSH----HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-HHHHHHHHH
T ss_pred EEEEEECCCh----HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc-chhHHHHHH
Confidence 5899999996 44556677888999999999999988888888888878888899999999999984 344555555
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+.+.+....+....+++++||+++ .|+++|.+.|.+.+
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g---------------------------~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTG---------------------------FGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccceEEEEECcCC---------------------------CCHHHHHHHHHHhh
Confidence 5555444321223578999999886 57777777777654
No 105
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=2.1e-14 Score=166.23 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|+|.+....... .+|........... + ..+.+||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-------------~-----------~~~~liD 77 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------------N-----------YDFNLID 77 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-------------S-----------SCCEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-------------C-----------ceEEEEE
Confidence 357999999999999999999999876533332 34433333222111 1 2589999
Q ss_pred CCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+... .++....+..++..+|++|||+|+..+++..+..+++.++..++|+++|+||+|+.....
T Consensus 78 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--------- 148 (456)
T 4dcu_A 78 TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--------- 148 (456)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----------------
T ss_pred CCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh---------
Confidence 9997522 345566788888999999999999999999999999999989999999999999864311
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+++......++++||+.+
T Consensus 149 --~~~e~~~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 149 --NIYDFYSLGFGEPYPISGTHG 169 (456)
T ss_dssp ----CCSGGGSSSSEEECCTTTC
T ss_pred --hHHHHHHcCCCceEEeecccc
Confidence 111222222345789999886
No 106
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=152.34 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...++.. .+ ..+.+. +.. ..+.|
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~---------------~~~---------~~l~i 81 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVD---------------GER---------TVLQL 81 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEET---------------TEE---------EEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEEC---------------CEE---------EEEEE
Confidence 56899999999999999999999876532 2222221 11 111111 110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH--HHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF--ELEEA 513 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~--~~~~v 513 (921)
|||||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ....+
T Consensus 82 ~Dt~G~~----~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v 157 (199)
T 2p5s_A 82 WDTAGQE----RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157 (199)
T ss_dssp EECTTCT----TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC
T ss_pred EECCCCc----chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccccccc
Confidence 9999974 3345677888999999999999876544433 34444443 4689999999999862100 00000
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+.... ..+++++||+++ .|++++...+.+.+.
T Consensus 158 ~~~~~~~~~~~~---~~~~~~~SA~~g---------------------------~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 158 PGHFGEKLAMTY---GALFCETSAKDG---------------------------SNIVEAVLHLAREVK 196 (199)
T ss_dssp CHHHHHHHHHHH---TCEEEECCTTTC---------------------------TTHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHc---CCeEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 011111111112 368999999987 688888888877654
No 107
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2.2e-14 Score=147.21 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=104.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
.+..++|+|+|.+|+|||||+|+|++..+.+ ...+|.. .+....+.. ++.. ..+.|
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l 79 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEI-------------NGEK---------VKLQI 79 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEE-------------TTEE---------EEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEE
Confidence 3456899999999999999999999876543 2333322 111111100 1110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. +.+...+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 80 ~Dt~G~----~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 155 (201)
T 2ew1_A 80 WDTAGQ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 155 (201)
T ss_dssp EEECCS----GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred EECCCc----HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHH
Confidence 999997 34556788899999999999999876443332 34444433 4679999999999863211 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ... ..+++++||+.+ .|++++...+.+.+.
T Consensus 156 ~~~-----~~~---~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 156 EFS-----EAQ---DMYYLETSAKES---------------------------DNVEKLFLDLACRLI 188 (201)
T ss_dssp HHH-----HHH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----HHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 111 368999999987 688888888776654
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.54 E-value=6.2e-14 Score=141.07 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=104.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|.+..+. ...||.. ++..... . ++ ..+.++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~~~t~g-~~~~~~~------------~-~~-----------~~l~i~D 66 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQ------------S-QG-----------FKLNVWD 66 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE--EEEEETT-EEEEEEE------------E-TT-----------EEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC--cccCcCC-eEEEEEE------------E-CC-----------EEEEEEE
Confidence 35789999999999999999999987542 1222222 1110000 0 01 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-h---hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-Q---QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~---~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++++|+|++++.+..+. .++..+ . ..+.|+++|+||+|+.... ..+++.+.
T Consensus 67 t~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~ 141 (181)
T 1fzq_A 67 IGGQR----KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEG 141 (181)
T ss_dssp CSSCG----GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHH
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHH
Confidence 99974 3445677888999999999999876554443 344433 2 2468999999999997542 22222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. .........+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~---~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 142 LN---LHTIRDRVWQIQSCSALTG---------------------------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp TT---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHTC-
T ss_pred hC---chhccCCceEEEEccCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 0111223467999999987 689999888887765
No 109
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.53 E-value=1.3e-14 Score=143.51 Aligned_cols=159 Identities=21% Similarity=0.135 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++.........+++.......... ++.. ..+.++|||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D~~ 59 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-------------DKEE---------VTLIVYDIW 59 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-------------TTEE---------EEEEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-------------CCeE---------EEEEEEECC
Confidence 478999999999999999999987654333333332222211110 1110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|..... ..+...++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 60 g~~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~- 135 (169)
T 3q85_A 60 EQGDAG---GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL- 135 (169)
T ss_dssp CC-----------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-
T ss_pred Cccccc---hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-
Confidence 984321 12444556789999999999875443333 34444433 3689999999999863211 11222111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ----~~~---~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 136 ----AGT---LSCKHIETSAALH---------------------------HNTRELFEGAVRQIR 166 (169)
T ss_dssp ----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred ----HHH---cCCcEEEecCccC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2468999999987 688888888776654
No 110
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=149.88 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+........... ... ..+.||||
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~----------~~~~l~Dt 79 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLG------------KDE----------FHLHLVDT 79 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------------C----------EEEEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEC------------CEE----------EEEEEEEC
Confidence 5689999999999999999999988765 333444432221111100 000 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ...+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 80 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 155 (201)
T 3oes_A 80 AGQDEY----SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL 155 (201)
T ss_dssp CCCCTT----CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCccch----HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH
Confidence 997432 23466788999999999999876444433 34444433 3679999999999864311 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.... ..+++++||+.+ .|++++.+.+.+.+..
T Consensus 156 -----~~~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 156 -----AESW---GATFMESSAREN---------------------------QLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -----HHHH---TCEEEECCTTCH---------------------------HHHHHHHHHHHHHHHH
T ss_pred -----HHHh---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1122 368999999987 5788888887776654
No 111
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.53 E-value=2.1e-14 Score=143.58 Aligned_cols=158 Identities=23% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.+|||
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~~~Dt 64 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSV-------------DGIP---------ARLDILDT 64 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4689999999999999999999988643 34445554322111110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ......++..+|++++|+|.+++.+..+. .++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 65 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 140 (181)
T 2fn4_A 65 AGQEEF----GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140 (181)
T ss_dssp CCTTTT----SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCchhh----HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 997432 33456677889999999999875443333 233333 335689999999999864211 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 141 -----~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 141 -----GAS---HHVAYFEASAKLR---------------------------LNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHH---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2468999999987 688888888877665
No 112
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.53 E-value=1.1e-14 Score=146.32 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...||+. .+....+.. ++.. ..+.||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 62 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIEL-------------DGKR---------IKLQIW 62 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEE-------------CCEE---------EEEEEE
Confidence 346899999999999999999999876432 2223322 111111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 63 Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 138 (183)
T 2fu5_C 63 DTAGQE----RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK 138 (183)
T ss_dssp EC-------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred cCCCCh----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHH
Confidence 999963 3445567788999999999999876543333 35555544 3679999999999975311 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . . ..+++++||+++ .|++++...+.+.+.
T Consensus 139 ~~~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 139 LAL----D-Y---GIKFMETSAKAN---------------------------INVENAFFTLARDIK 170 (183)
T ss_dssp HHH----H-H---TCEEEECCC------------------------------CCHHHHHHHHHHHHH
T ss_pred HHH----H-c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 2 368999999987 688888888876654
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.53 E-value=9.5e-15 Score=148.24 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=100.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.+......+..+....+.. ++.. ..+.|+||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 77 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-------------DGKQ---------IKLQIWDT 77 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3579999999999999999999988765432222222221111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 78 ~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 153 (191)
T 2a5j_A 78 AGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA 153 (191)
T ss_dssp TTGGG----TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCchh----hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH
Confidence 99642 233466788999999999999875444332 35555543 3689999999999864211 112222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . . ..+++++||+++ .|++++.+.|.+.+.
T Consensus 154 ~----~-~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 154 R----E-H---GLIFMETSAKTA---------------------------CNVEEAFINTAKEIY 183 (191)
T ss_dssp H----H-H---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H----H-c---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1 1 368999999887 688888888776654
No 114
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=8.7e-15 Score=148.51 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=102.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..++|+|+|.+|+|||||+|.|++..+.+......+... ..+.... .. ..+.|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~----------~~~~i 76 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE--------------KR----------VKLQI 76 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT--------------TT----------EEEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC--------------EE----------EEEEE
Confidence 3468999999999999999999998765432111111111 1111110 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. +........++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 77 ~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 152 (191)
T 3dz8_A 77 WDTAGQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQ 152 (191)
T ss_dssp ECHHHH----HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EeCCCh----HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHH
Confidence 999995 44556788889999999999999875443332 34555544 4689999999999853211 112221
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 153 ~~-----~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 153 LL-----AEQL---GFDFFEASAKEN---------------------------ISVRQAFERLVDAIC 185 (191)
T ss_dssp HH-----HHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----HHHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 1112 368999999987 688888888776654
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.53 E-value=1.3e-14 Score=145.39 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+ +....||+.......+ ..++.. ..+.++||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~~---------~~~~i~Dt 63 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANV-------------VVNGAT---------VNLGLWDT 63 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCC-------------C----------------CEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEE-------------EECCEE---------EEEEEEEC
Confidence 468999999999999999999998764 2334444432110000 001110 14779999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhhc--CCeEEEEEeCCCCCCChHHHHH------
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQW--KKKVVFVLNKSDLYQNAFELEE------ 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~------ 512 (921)
||... ....+..++..+|++++|+|++++.+..+.. ++..+... +.|+++|+||+|+.........
T Consensus 64 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (182)
T 3bwd_D 64 AGQED----YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVP 139 (182)
T ss_dssp CC-CT----TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCC
T ss_pred CCChh----hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCC
Confidence 99743 2345667889999999999998765554442 55555542 6899999999998755321000
Q ss_pred -HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 -AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 -v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...... .+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 140 v~~~~~~-~~~~~~~--~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 140 ITTVQGE-ELKKLIG--APAYIECSSKSQ---------------------------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCHHHHH-HHHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHS
T ss_pred CCHHHHH-HHHHHcC--CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 001111 1122222 248999999987 688888888876654
No 116
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=147.97 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=101.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|.|++..+ +....||+.......+.. ++.. ..+.+||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~D 74 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSV-------------DGRP---------VRLQLCD 74 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEE-------------CCEE---------EEEEEEE
Confidence 3578999999999999999999998873 345556664332211110 1110 1378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHH----
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEA---- 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v---- 513 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+..........
T Consensus 75 t~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 150 (201)
T 2q3h_A 75 TAGQDEF----DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK 150 (201)
T ss_dssp CCCSTTC----SSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred CCCCHHH----HHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccc
Confidence 9998432 23455688999999999999976655554 355555543 68999999999997542111110
Q ss_pred ----HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ----ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ----~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 151 ~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 151 EKPVPEEAAKLLAEEIK--AASYIECSALTQ---------------------------KNLKEVFDAAIVAGI 194 (201)
T ss_dssp CCCCCHHHHHHHHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcC--CcEEEEEecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 0000111111222 248999999987 688888888876654
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.5e-14 Score=146.90 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=105.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+ +....||+.......+.. ++.. ..+.+||||
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~D~~ 74 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTV-------------GGKQ---------YLLGLYDTA 74 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEES-------------SSCE---------EEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999998764 344455554322111110 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHH------
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEA------ 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v------ 513 (921)
|.... ......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+..
T Consensus 75 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 75 GQEDY----DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp CSSSS----TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred CCcch----hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence 97532 24466788999999999999876544443 356666654 78999999999998653211110
Q ss_pred ---HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ---ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ---~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... .+...++ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 151 ~v~~~~~~-~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 151 PICVEQGQ-KLAKEIG--ACCYVECSALTQ---------------------------KGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCCHHHHH-HHHHHHT--CSCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHcC--CcEEEEeeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 01111 1111122 237999999987 688888888776543
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=2.4e-14 Score=143.80 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=101.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.++. ...||... ...+.+. + ..+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~~~~---------------~-----------~~~~i~ 67 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--TTKPTIGFNVETLSYK---------------N-----------LKLNVW 67 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--EECSSTTCCEEEEEET---------------T-----------EEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--ccCCcCccceEEEEEC---------------C-----------EEEEEE
Confidence 36799999999999999999999987652 22233221 1111110 1 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.... ...+..++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ..+++.+
T Consensus 68 Dt~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~ 142 (183)
T 1moz_A 68 DLGGQTSI----RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSK 142 (183)
T ss_dssp EEC----C----CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCCHhH----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-CHHHHHH
Confidence 99997432 23456788999999999999887665543 3445443 2568999999999997541 2222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.. ........+++++||+++ .|++++.+.+.+.+.
T Consensus 143 ~~~~---~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 143 ELNL---VELKDRSWSIVASSAIKG---------------------------EGITEGLDWLIDVIK 179 (183)
T ss_dssp HTTT---TTCCSSCEEEEEEBGGGT---------------------------BTHHHHHHHHHHHHH
T ss_pred HhCc---ccccCCceEEEEccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 2110 011123457999999987 688888888877654
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.9e-14 Score=148.11 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=102.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+. ....||+.......... ++.. ..+.|||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 81 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEV-------------DGKQ---------VELALWDTA 81 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEE-------------TTEE---------EEEEEEECT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 579999999999999999999987754 23334443222111100 1110 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH---
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF--- 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~--- 516 (921)
|.... ...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.+...
T Consensus 82 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (207)
T 2fv8_A 82 GQEDY----DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157 (207)
T ss_dssp TCTTC----TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred CcHHH----HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence 97432 24466788999999999999876544443 355555543 78999999999997653222211110
Q ss_pred -----HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 -----VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 -----~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+...++ ..+++++||+++ .|++++.+.|.+.+..
T Consensus 158 ~v~~~~~~~~~~~~~--~~~~~~~SA~~g---------------------------~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 158 PVRTDDGRAMAVRIQ--AYDYLECSAKTK---------------------------EGVREVFETATRAALQ 200 (207)
T ss_dssp CCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhcC--CCEEEEeeCCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 0011111111 238999999987 6899999888877653
No 120
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=99.53 E-value=8.7e-15 Score=152.86 Aligned_cols=162 Identities=11% Similarity=-0.048 Sum_probs=127.5
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeEEcCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGVLLSDQ--- 167 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~GvHL~~~--- 167 (921)
.+.+.++.+.++|++++|+|.++.. -..-.+.++.++++|+ . .+.|++|| +++.+.++||||||+.+.
T Consensus 18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~ 97 (230)
T 1tqj_A 18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA 97 (230)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccccc
Confidence 7788999999999999999986321 0011268888999986 4 78899999 699999999999988777
Q ss_pred -CCCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC--C--CCC---CCcc-hhhhhhcC--
Q 002437 168 -GLPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG--E--GQK---ADVI-ENSLFTNV-- 234 (921)
Q Consensus 168 -~l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv--T--k~~---~g~~-~~~~~~~~-- 234 (921)
+.+...+|.+.+ .+ . .+|+++ |+..+..++ ...++|||.+++| | +.. .+++ .+++++..
T Consensus 98 ~~~~~~~~~~i~~---~g-~---~~gv~~~p~t~~e~~~~-~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~ 169 (230)
T 1tqj_A 98 SPHLHRTLCQIRE---LG-K---KAGAVLNPSTPLDFLEY-VLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169 (230)
T ss_dssp CTTHHHHHHHHHH---TT-C---EEEEEECTTCCGGGGTT-TGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH---cC-C---cEEEEEeCCCcHHHHHH-HHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHh
Confidence 666677777764 44 3 578888 788887777 6789999999998 2 222 1233 45666655
Q ss_pred ---CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 ---KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ---~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||.+.|||+++|+.++.++||+++++.+|.++.
T Consensus 170 ~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a 207 (230)
T 1tqj_A 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA 207 (230)
T ss_dssp HTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred cCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 89999999999999999999999999999988764
No 121
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.53 E-value=5.1e-14 Score=144.27 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=101.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|.|++..+.. ...+|.. .+....+.. ++.. ..+.||
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~ 83 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEI-------------QGKR---------VKLQIW 83 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEE-------------CCEE---------EEEEEE
Confidence 456899999999999999999999877532 2223321 111111100 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~ 515 (921)
||||.. +....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... -..+++.+
T Consensus 84 Dt~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 159 (201)
T 2hup_A 84 DTAGQE----RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQS 159 (201)
T ss_dssp CCTTCG----GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCcH----hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHH
Confidence 999973 4456678889999999999999875443332 35555543 458999999999986421 11222222
Q ss_pred HHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. .. +++++||+++ .|++++.+.|.+.+.
T Consensus 160 ~~~-----~~---~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 160 LAE-----HY---DILCAIETSAKDS---------------------------SNVEEAFLRVATELI 192 (201)
T ss_dssp HHH-----HT---TCSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHH-----Hc---CCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 12 34 8999999987 688888888877654
No 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.53 E-value=3.1e-14 Score=142.99 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=101.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+++.......... ++.. ..+.++||
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~Dt 73 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEI-------------DNQW---------AILDVLDT 73 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEe-------------CCcE---------EEEEEEEC
Confidence 4689999999999999999999987543 33444443222111110 1110 13678999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||... .......++..+|++++|+|++++.+.... .++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 74 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~ 149 (183)
T 3kkq_A 74 AGQEE----FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149 (183)
T ss_dssp CSCGG----GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH
T ss_pred CCchh----hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHH
Confidence 99743 334456778889999999999876433332 233333 235689999999999865311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEeccc-chHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSAR-STLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~-~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ ..+++++||+ .+ .|++++.+.+.+.+.
T Consensus 150 ~~-----~~---~~~~~~~Sa~~~~---------------------------~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 150 AT-----KY---NIPYIETSAKDPP---------------------------LNVDKTFHDLVRVIR 181 (183)
T ss_dssp HH-----HH---TCCEEEEBCSSSC---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----Hh---CCeEEEeccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 11 12 3679999998 65 688888888876654
No 123
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.53 E-value=6.6e-14 Score=142.11 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+++|.+|+|||||+|+|.+..+.. ..||... +..... .++ ..+.++||
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~--~~~t~~~-~~~~~~-------------~~~-----------~~~~i~Dt 74 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT--LQPTWHP-TSEELA-------------IGN-----------IKFTTFDL 74 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCCSC-EEEEEE-------------ETT-----------EEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc--cccCCCC-CeEEEE-------------ECC-----------EEEEEEEC
Confidence 45799999999999999999999877532 2222221 111110 011 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||... ....+..++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+... ...+++.+.
T Consensus 75 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~- 148 (190)
T 1m2o_B 75 GGHIQ----ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSA- 148 (190)
T ss_dssp CCSGG----GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHH-
T ss_pred CCCHH----HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHH-
Confidence 99743 233466788999999999999987655443 3444432 256899999999999753 122222222
Q ss_pred HHHHHHh--------hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 518 KENTMKL--------LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 518 ~~~~~~~--------~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+... ......+++++||+++ .|++++.+.+.+.
T Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 149 ---LGLLNTTGSQRIEGQRPVEVFMCSVVMR---------------------------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---TTCSSCCC---CCSSCCEEEEECBTTTT---------------------------BSHHHHHHHHHTT
T ss_pred ---hCCccccccccccccceEEEEEeECCcC---------------------------CCHHHHHHHHHhh
Confidence 1111 0123468999999987 6888888877654
No 124
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.52 E-value=2.7e-14 Score=147.89 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=104.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..++|+|+|.+|+|||||+|+|++..+.+ ...+|+. .+. .+.+...... ...... ....+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~l~ 87 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPN-------GSSGKA-------FKVHLQ 87 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC--------------CCE-------EEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCcccc-------ccccCc-------eeEEEE
Confidence 456899999999999999999999987632 2222221 111 1111110000 000000 002489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
||||||. +.+...+..++..+|++|||+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++
T Consensus 88 l~Dt~G~----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 88 LWDTAGQ----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp EEEEESH----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEECCCc----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 9999995 45566788899999999999999876544443 35555543 4679999999999864211 1122
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... .. ...+++++||+++ .|++++.+.+.+.+.
T Consensus 164 ~~~~~-----~~---~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 164 ARELA-----DK---YGIPYFETSAATG---------------------------QNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHH-----HH---TTCCEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHH-----HH---CCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 11 2368999999987 688888887776654
No 125
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.52 E-value=1.7e-13 Score=155.87 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=114.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecC--CCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--SPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--~~~l~~l~ 438 (921)
...++|+++|.+|+|||||+|+|++...... +...+| ......... ............+.+. ......+.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETN----IGVCESCKK---PEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEE----EEECTTSCT---TTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccc----eeecccccc---ccceecccccccccccccccccceEE
Confidence 4578999999999999999999999654321 111111 111000000 0000000000000000 00013589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||||. +.+...+..++..+|++|+|+|++++. ..+..+++..+...+ +|+++|+||+|+... ++..+..+.
T Consensus 79 iiDtPGh----~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~ 153 (403)
T 3sjy_A 79 FIDAPGH----EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-EEALSQYRQ 153 (403)
T ss_dssp EEECCCC----GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHH
T ss_pred EEECCCc----HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-HHHHHHHHH
Confidence 9999996 344556777889999999999999886 666666776666555 589999999999853 444445555
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.+... .....+++++||+++ .|+++|.+.|.+.+..
T Consensus 154 i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 154 IKQFTKGT-WAENVPIIPVSALHK---------------------------INIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred HHHHHHhh-CCCCCEEEEEECCCC---------------------------cChHHHHHHHHHhCCC
Confidence 55444332 234678999999987 6888999999887654
No 126
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.52 E-value=2.1e-14 Score=143.98 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+ .....||+.......... ++.. ..+.+|||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 61 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITV-------------NGQE---------YHLQLVDT 61 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 357999999999999999999997664 344445554322111110 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ......++..+|++++|+|.+++.+..... ++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 62 ~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 137 (181)
T 3t5g_A 62 AGQDEY----SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137 (181)
T ss_dssp CCCCTT----CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred CCchhh----hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH
Confidence 997533 234557788999999999998764444432 33333 334689999999999864311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .. ...+++++||+++ .|++++...+.+.+..
T Consensus 138 ~-----~~---~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 138 A-----ES---WNAAFLESSAKEN---------------------------QTAVDVFRRIILEAEK 169 (181)
T ss_dssp H-----HH---TTCEEEECCTTSH---------------------------HHHHHHHHHHHHHHHT
T ss_pred H-----HH---hCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 1 11 2468999999987 5788888877776653
No 127
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.52 E-value=5.3e-14 Score=143.81 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|.+.++.. ..||... ...+.+ ++ ..+.++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~t~~~~~~~~~~---------------~~-----------~~l~i~ 74 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ--HVPTLHPTSEELTI---------------AG-----------MTFTTF 74 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEEEE---------------TT-----------EEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCCCceeEEEEE---------------CC-----------EEEEEE
Confidence 356899999999999999999999876532 2222111 011111 11 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.. .....+..+++.+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+... ...+++.+
T Consensus 75 Dt~G~~----~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~ 149 (198)
T 1f6b_A 75 DLGGHI----QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLRE 149 (198)
T ss_dssp EECC--------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHH
T ss_pred ECCCcH----hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHH
Confidence 999973 2334566788999999999999887554443 3444442 246899999999999752 12233322
Q ss_pred HHHHHHHH-------h--hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMK-------L--LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~-------~--~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+...... + ......+++++||+++ .|++++.+.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 150 MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR---------------------------QGYGEGFRWMAQYI 197 (198)
T ss_dssp HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTT---------------------------BSHHHHHHHHHTTC
T ss_pred HhCcccccccccccccccccCceEEEEEEECCCC---------------------------CCHHHHHHHHHHhc
Confidence 22110000 0 0013468999999987 68888888876543
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=146.70 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=98.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~ 79 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-------------GGKT---------VKLQIW 79 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-------------CCee---------eEEEEE
Confidence 345789999999999999999999988764322221121221111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~ 515 (921)
||||. +.....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++...
T Consensus 80 Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 155 (200)
T 2o52_A 80 DTAGQ----ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR 155 (200)
T ss_dssp CCTTH----HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred cCCCc----HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH
Confidence 99995 33344566788999999999999876543333 34444433 468999999999986321 11122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+++ .|++++...+.+.+.
T Consensus 156 ~~~-----~---~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 156 FAQ-----E---NELMFLETSALTG---------------------------ENVEEAFLKCARTIL 187 (200)
T ss_dssp HHH-----H---TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 1 2468999999987 678888877766554
No 129
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.52 E-value=2.7e-14 Score=147.33 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=107.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+ +....||+.......+.. ++.. ..+.||||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 64 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-------------DGQI---------VNLGLWDT 64 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEEC-------------SSCE---------EEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 458999999999999999999998765 344455554322211110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChH---------H
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAF---------E 509 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~---------~ 509 (921)
||.... ...+..++..+|++|+|+|.+++.+..+. .++..+... +.|+++|+||+|+..... .
T Consensus 65 ~G~~~~----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~ 140 (212)
T 2j0v_A 65 AGQEDY----SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140 (212)
T ss_dssp CCCCCC----CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCC
T ss_pred CCcHHH----HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCC
Confidence 998432 23466788999999999999876554443 355666543 789999999999875422 1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 510 LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.++... +...++ ..+++++||+++ .|++++.+.+.+.+...
T Consensus 141 ~~~~~~-----~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 141 STQGEE-----LRKQIG--AAAYIECSSKTQ---------------------------QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHH-----HHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHHCC
T ss_pred HHHHHH-----HHHHcC--CceEEEccCCCC---------------------------CCHHHHHHHHHHHHhhh
Confidence 122211 111122 248999999987 68889888888777653
No 130
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.51 E-value=6.3e-14 Score=142.23 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc------ceeEE-EEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT------NEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+|+|.+|+|||||+|.+.+.... ...+++ ..++. ..+.... ....++.. .
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~~---------~ 74 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLD-------IGEVKGFK---------T 74 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSS-------CCCSSSCE---------E
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccc-------cccccCCc---------e
Confidence 4589999999999999999998875422 211111 01111 1111000 00001110 1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh---------cCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ---------WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~---------~~~~vivVlNK~D~~~~ 506 (921)
.+.+|||||... +...+..++..+|++|+|+|++++.+......+..+.. .+.|+++|+||+|+...
T Consensus 75 ~~~i~Dt~G~~~----~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 75 RFHLYTVPGQVF----YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp EEEEEECCSCCS----CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred EEEEEeCCChHH----HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 489999999743 33467778999999999999986544444433332221 46799999999999754
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 507 AFELEEAISFVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+++.+. ...... +++++||+.+ .|++++.+.+.+.+.
T Consensus 151 -~~~~~~~~~--------~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 151 -LPVEMVRAV--------VDPEGKFPVLEAVATEG---------------------------KGVFETLKEVSRLVL 191 (198)
T ss_dssp -CCHHHHHHH--------HCTTCCSCEEECBGGGT---------------------------BTHHHHHHHHHHHHH
T ss_pred -cCHHHHHHH--------HHhcCCceEEEEecCCC---------------------------cCHHHHHHHHHHHHH
Confidence 222222222 222345 8999999987 688888888877655
No 131
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.51 E-value=3.7e-14 Score=145.37 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
..++|+|+|.+|+|||||+|+|++. .+. ....+|+. .+. .+.+.... .. ..+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~------------~~----------~~~ 75 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-KDYAMTSGVEVVVAPVTIPDTT------------VS----------VEL 75 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSS------------EE----------EEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-CCCCCccceEEEEEEEEECCcc------------cE----------EEE
Confidence 3479999999999999999999987 432 33344443 111 11111100 01 148
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCC-ChH-
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQ-NAF- 508 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~-~~~- 508 (921)
.||||||. ......+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.. ...
T Consensus 76 ~l~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v 151 (208)
T 2yc2_C 76 FLLDTAGS----DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV 151 (208)
T ss_dssp EEEETTTT----HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC
T ss_pred EEEECCCc----HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC
Confidence 99999997 34556788889999999999999876543333 45555544 4689999999999975 211
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccc-hHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARS-TLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~-~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..++..+... . ...+++++||+. + .|++++.+.+.+.+.
T Consensus 152 ~~~~~~~~~~----~----~~~~~~~~Sa~~~~---------------------------~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 152 RLDMAQDWAT----T----NTLDFFDVSANPPG---------------------------KDADAPFLSIATTFY 191 (208)
T ss_dssp CHHHHHHHHH----H----TTCEEEECCC----------------------------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHH----H----cCCEEEEeccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 1122222221 1 136899999998 7 577777777776554
No 132
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.51 E-value=4.9e-13 Score=149.44 Aligned_cols=217 Identities=17% Similarity=0.120 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCC
Q 002437 324 KQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVV 395 (921)
Q Consensus 324 ~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~ 395 (921)
+.+...+++.+.+.+..++...+.... ...+...+ ......++|+|+|.+|+|||||+|.|. |.++......
T Consensus 37 ~~~~~g~~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 37 TAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHTTCTTHHHHHHHHHHCCSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHcCCHHHHHHHHHHHhhcChhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 445556677888888988876655443 22333333 344577899999999999999999996 3443333333
Q ss_pred CccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHHHH
Q 002437 396 PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQRLT 456 (921)
Q Consensus 396 ~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~~~ 456 (921)
|.+....-...++. ..........+.++...+.. ...+++||||||+... .
T Consensus 117 p~~~~~~g~~l~d~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-------~ 186 (355)
T 3p32_A 117 PSSTRTGGSILGDK---TRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS-------E 186 (355)
T ss_dssp -------------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH-------H
T ss_pred CCCCcccchhccch---hhHHhhccCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-------H
Confidence 32221000000000 00000000111111111100 0136899999998532 2
Q ss_pred HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC---CCCCeEE
Q 002437 457 EEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN---IENVTIY 533 (921)
Q Consensus 457 ~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~v~ 533 (921)
...+..+|++|+|+|+...... +.+.. .....|+++|+||+|+... .........+...+..+.. .+.++|+
T Consensus 187 ~~~~~~aD~vl~V~d~~~~~~~---~~l~~-~~~~~p~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 261 (355)
T 3p32_A 187 VAVANMVDTFVLLTLARTGDQL---QGIKK-GVLELADIVVVNKADGEHH-KEARLAARELSAAIRLIYPREALWRPPVL 261 (355)
T ss_dssp HHHHTTCSEEEEEEESSTTCTT---TTCCT-TSGGGCSEEEEECCCGGGH-HHHHHHHHHHHHHHHHHSTTCCSCCCCEE
T ss_pred HHHHHhCCEEEEEECCCCCccH---HHHHH-hHhhcCCEEEEECCCCcCh-hHHHHHHHHHHHHHhhccccccCCCCceE
Confidence 2335889999999998754321 11110 1123599999999998632 3344444444444333211 2357899
Q ss_pred EecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 534 PVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 534 ~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++||+++ .|+++|.+.|.+.+.
T Consensus 262 ~iSA~~g---------------------------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 262 TMSAVEG---------------------------RGLAELWDTVERHRQ 283 (355)
T ss_dssp EEBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred EEEcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 9999987 799999999988765
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.51 E-value=5.5e-14 Score=161.85 Aligned_cols=166 Identities=22% Similarity=0.256 Sum_probs=110.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|+|+|......+ ..++|..+....+. .+| ..+.+||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~-------------~~g-----------~~~~l~D 234 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF-------------IDG-----------RKYVFVD 234 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE-------------ETT-----------EEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE-------------ECC-----------EEEEEEE
Confidence 5689999999999999999999998754333 33344332211111 011 2478999
Q ss_pred CCCCChhhhHH--------HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH-HHHH
Q 002437 442 TPGTNVILQRQ--------QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 442 TPG~~~~~~~~--------~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
|||+....... ...+..++..+|++++|+|+..+.+..+..+...+...+.|+++|+||||+..... ..++
T Consensus 235 t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~ 314 (439)
T 1mky_A 235 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE 314 (439)
T ss_dssp CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH
Confidence 99983211100 01134567889999999999988888887777777788999999999999985432 1344
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+.+...+.. ....+++++||+++ .|++++.+.+.+.+.
T Consensus 315 ~~~~~~~~~~~---~~~~~~~~~SA~~g---------------------------~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 315 FTKLFREKLYF---IDYSPLIFTSADKG---------------------------WNIDRMIDAMNLAYA 354 (439)
T ss_dssp HHHHHHHHCGG---GTTSCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---CCCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 44444433322 23578999999987 688888888876654
No 134
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.51 E-value=3.2e-14 Score=142.01 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+. .+....+.. .++.. ..+.++|
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~~~---------~~~~~~D 62 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITL------------PGNLN---------VTLQIWD 62 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEE------------TTTEE---------EEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEe------------CCCCE---------EEEEEEE
Confidence 4689999999999999999999987653 22223332 111111110 01100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-----cCCe-EEEEEeCCCCCCCh-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-----WKKK-VVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-----~~~~-vivVlNK~D~~~~~-~~~~~v 513 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. ...| +++|+||+|+.... ...++.
T Consensus 63 t~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~ 138 (178)
T 2hxs_A 63 IGGQTIG----GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH 138 (178)
T ss_dssp CTTCCTT----CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred CCCCccc----cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence 9997432 34467788999999999999876544333 34444443 1444 89999999986421 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..... .. ..+++++||+++ .|++++.+.+.+.+.+
T Consensus 139 ~~~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 139 LRFCQ-----EN---GFSSHFVSAKTG---------------------------DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHH-----HH---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHTT
T ss_pred HHHHH-----Hc---CCcEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 22211 12 368999999987 6888888888877654
No 135
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.51 E-value=6.8e-14 Score=141.54 Aligned_cols=144 Identities=16% Similarity=0.241 Sum_probs=90.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.||||
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 76 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-------------DGER---------IKIQLWDT 76 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987664322221121221111110 1110 14899999
Q ss_pred CCCChhhhHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 443 PGTNVILQRQQ-RLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||.. ... ..+..++..+|++|+|+|++++.+.... .++..+. ..+.|+++|+||+|+..... ..++...
T Consensus 77 ~G~~----~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 152 (189)
T 1z06_A 77 AGQE----RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 152 (189)
T ss_dssp CCSH----HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred CCch----hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH
Confidence 9963 333 5677888999999999999875443332 2334333 34689999999999864211 1122211
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... ...+++++||+.+
T Consensus 153 -----~~~~---~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 153 -----FADT---HSMPLFETSAKNP 169 (189)
T ss_dssp -----HHHH---TTCCEEECCSSSG
T ss_pred -----HHHH---cCCEEEEEeCCcC
Confidence 1111 2368999999886
No 136
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.51 E-value=1e-13 Score=138.45 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=99.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+.+ ..||+......... .++.. ..+.+|||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 61 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEML-------------VDGQT---------HLVLIREE 61 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEE-------------ETTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 45899999999999999999999887653 34444322111110 01110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H---HHHhhh---cCCeEEEEEeCCCCCCC---hHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-F---LRYTQQ---WKKKVVFVLNKSDLYQN---AFELEE 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~---l~~l~~---~~~~vivVlNK~D~~~~---~~~~~~ 512 (921)
||... ..+++.+|++|+|+|.+++.+..+.. + +..+.. .+.|+++|.||+|+... ....++
T Consensus 62 ~G~~~---------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 132 (178)
T 2iwr_A 62 AGAPD---------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132 (178)
T ss_dssp SSSCC---------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH
T ss_pred CCCch---------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH
Confidence 99752 35677899999999999776555443 2 333332 36799999999998421 111222
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... .. ...+++.+||+.+ .|++++.+.+.+.+.
T Consensus 133 ~~~~~~----~~---~~~~~~~~Sa~~~---------------------------~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 133 ARALXA----DM---KRCSYYETXATYG---------------------------LNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHH----HH---SSEEEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHH----hh---cCCeEEEEecccc---------------------------CCHHHHHHHHHHHHH
Confidence 222211 11 1368999999987 688888887776654
No 137
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1e-13 Score=141.19 Aligned_cols=157 Identities=21% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...||+.......+.. ++.. ..+.+|||
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 83 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATI-------------DDEV---------VSMEILDT 83 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 56899999999999999999999887543 3334433221111100 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||... ......++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ...++....
T Consensus 84 ~G~~~-----~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 84 AGQED-----TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp CCCCC-----CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCCc-----ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99864 34567788899999999999875443332 2333333 2468999999999986421 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccccc-chHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRIN-TFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~s-g~~~L~~~l~~~l~ 582 (921)
.. . . ..+++++||+.+ . |++++.+.+.+.+.
T Consensus 159 ~~----~-~---~~~~~~~Sa~~g---------------------------~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 159 AT----E-L---ACAFYECSACTG---------------------------EGNITEIFYELCREVR 190 (196)
T ss_dssp HH----H-H---TSEEEECCTTTC---------------------------TTCHHHHHHHHHHHHH
T ss_pred HH----H-h---CCeEEEECCCcC---------------------------CcCHHHHHHHHHHHHH
Confidence 21 1 1 368999999987 5 88888888876654
No 138
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.50 E-value=1.2e-13 Score=139.17 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=80.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......+.. .... ..+.+|||
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~~~i~Dt 62 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEI------------DTQR----------IELSLWDT 62 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC------------SSCE----------EEEEEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEE------------CCEE----------EEEEEEEC
Confidence 4689999999999999999999987653 33444443222111110 0111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
||... +......++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..+
T Consensus 63 ~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 63 SGSPY----YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred CCChh----hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 99742 334456788999999999999876555443 34455544 36899999999999754
No 139
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=1.9e-13 Score=155.71 Aligned_cols=196 Identities=17% Similarity=0.114 Sum_probs=116.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC---CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK---DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~---~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+++|.+|+|||||+|+|++..... ......+ ..+....+..+..........+... ...+.|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~-------~~d~~~~e~~~GiTi~~~~~~~~~~---~~~~~i 79 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG-------DIDKAPEERARGITINTAHVEYETA---KRHYSH 79 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHH-------HHSCSHHHHHHTCCCSCEEEEEECS---SCEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchh-------hccCCHHHHHcCCCEEeeeeEeccC---CeEEEE
Confidence 56899999999999999999998731000 0000000 0000000000000000000000000 135899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||||... +...+..++..+|++|+|+|++++...+..+++..+...+.| +++|+||+|+..+.+.++.+...+.
T Consensus 80 iDtpG~~~----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 80 VDCPGHAD----YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp EECCCSGG----GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCChHH----HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 99999853 345567788999999999999998888888888888878888 8999999999864333444444444
Q ss_pred HHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+..+ +. ...+++++||+++.+....... ..+....|. .++..|.+.|.+++.
T Consensus 156 ~~l~~~-~~~~~~~~~i~~SA~~g~~v~~~~~~--------~~~~~~~~~-~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 156 DLLNQY-EFPGDEVPVIRGSALLALEQMHRNPK--------TRRGENEWV-DKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHT-TSCTTTSCEEECCHHHHHHHHHHCTT--------CCTTSCHHH-HHHHHHHHHHHHHSC
T ss_pred HHHHHh-cccccCCCEEEccHHHhhhhhccccc--------cccCCCccc-ccHHHHHHHHHhhcC
Confidence 444332 22 3478999999998542211000 000012343 457788888877665
No 140
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.49 E-value=7.8e-14 Score=142.23 Aligned_cols=161 Identities=21% Similarity=0.143 Sum_probs=101.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|.|++..........++.......+. .++.. -.+.+||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------~~l~i~D 78 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM-------------VDKEE---------VTLVVYD 78 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE-------------ECCEE---------EEEEEEe
Confidence 3568999999999999999999987543222111222221111110 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|||..... ..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 79 t~g~~~~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 155 (195)
T 3cbq_A 79 IWEQGDAG---GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 155 (195)
T ss_dssp CCCCSGGG---HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred cCCCccch---hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH
Confidence 99985332 12556677899999999999876543333 34555543 3689999999999974311 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .... ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 156 ~-----a~~~---~~~~~e~Sa~~~---------------------------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 156 L-----AGTL---SCKHIETSAALH---------------------------HNTRELFEGAVRQIR 187 (195)
T ss_dssp H-----HHHT---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred H-----HHHh---CCEEEEEcCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1112 368999999987 688888888877665
No 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=1.8e-14 Score=163.55 Aligned_cols=160 Identities=24% Similarity=0.242 Sum_probs=108.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.++.... ..++|..+....+...+ . ..+.|||
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~------------~-----------~~l~liD 89 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP------------I-----------GPVTLVD 89 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT------------T-----------EEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC------------C-----------CeEEEEE
Confidence 5689999999999999999999998865433 33344333222211100 0 1489999
Q ss_pred CCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVIL---QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||+.... ......+..++..+|++|+|+|+ .....+..++..+.+.+.|+++|+||+|+...... ...
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~------~~~ 161 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE------ELK 161 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT------HHH
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH------HHH
Confidence 99986432 12234467788999999999999 56778888999999889999999999999865322 111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. ...+.+++++||+++ .|++++.+.|.+.+..
T Consensus 162 ~~l~---~~~g~~v~~vSAktg---------------------------~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 162 GLYE---SRYEAKVLLVSALQK---------------------------KGFDDIGKTISEILPG 196 (423)
T ss_dssp HHSS---CCTTCCCCCCSSCCT---------------------------TSTTTHHHHHHHHSCC
T ss_pred HHHH---HHcCCCEEEEECCCC---------------------------CCHHHHHHHHHHhhhh
Confidence 1222 223468999999987 6888888888888743
No 142
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.49 E-value=2.2e-13 Score=138.87 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|.+.+..... .+..+++.... ..+. ++. ...+.+|
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~---------~~~l~i~ 74 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYK-DDIS--------------NSS---------FVNFQIW 74 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEE-EEEC--------------CTT---------SCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceee-eecc--------------CCC---------eeEEEEE
Confidence 56899999999999999999999853221 01111111111 1100 000 0258999
Q ss_pred eCCCCChhhhHHHHHH---HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHH--
Q 002437 441 DTPGTNVILQRQQRLT---EEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFEL-- 510 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~---~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~-- 510 (921)
||||.... .... ..++..+|++|+|+|++++.......+...+.. .+.|+++|+||+|+...+...
T Consensus 75 Dt~G~~~~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 150 (196)
T 3llu_A 75 DFPGQMDF----FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET 150 (196)
T ss_dssp ECCSSCCT----TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred ECCCCHHH----HhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHH
Confidence 99997432 1223 577788999999999998733333333333322 368999999999998543222
Q ss_pred -HHHHHHHHHHHHHhh-CCCCCeEEEecccc
Q 002437 511 -EEAISFVKENTMKLL-NIENVTIYPVSARS 539 (921)
Q Consensus 511 -~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~ 539 (921)
..+.......+.... .....+++.+||++
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred HhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence 222222223333311 12357899999975
No 143
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=4.1e-14 Score=142.76 Aligned_cols=160 Identities=23% Similarity=0.359 Sum_probs=104.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|++..........+|.......+.. ++ ..+.+|||
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~Dt 61 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-------------NG-----------EKFKVVDL 61 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-------------CC-----------cEEEEEEC
Confidence 3579999999999999999999997654333333333322221110 11 14899999
Q ss_pred CCCChhhh--HHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQ--RQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~--~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||...... ....+...++. .+|++++|+|..+. .....++..+...+.|+++|+||+|+.... .+.....
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~--- 135 (188)
T 2wjg_A 62 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSL-GIEIDVD--- 135 (188)
T ss_dssp CCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHT-TCCCCHH---
T ss_pred CCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccc-cchHHHH---
Confidence 99864321 22334555553 59999999998752 344456677777789999999999975221 0000111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+...+ ..+++++||+.+ .|++++.+.+.+.+.+
T Consensus 136 -~~~~~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 136 -KLEKIL---GVKVVPLSAAKK---------------------------MGIEELKKAISIAVKD 169 (188)
T ss_dssp -HHHHHH---TSCEEECBGGGT---------------------------BSHHHHHHHHHHHHTT
T ss_pred -HHHHHh---CCCeEEEEecCC---------------------------CCHHHHHHHHHHHHHh
Confidence 111222 258999999886 6899999988887764
No 144
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=8.3e-13 Score=141.93 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=82.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++..+...+. .++|.....+.... .+ ..+.|||
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~iiD 93 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-------------AG-----------FTLNIID 93 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-------------CC-----------eEEEEEE
Confidence 46899999999999999999999988754433 33443332222111 11 2489999
Q ss_pred CCCCChhh---hHHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-C----CeEEEEEeCCCCCCC
Q 002437 442 TPGTNVIL---QRQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-K----KKVVFVLNKSDLYQN 506 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-~----~~vivVlNK~D~~~~ 506 (921)
|||+.... ......+..++ ..+|++|||+|.+. .++..+..+++.+... + .|+++|+||+|+...
T Consensus 94 TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 99986432 22233344443 57999999988764 4666777788777543 2 599999999998754
No 145
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.3e-14 Score=148.13 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=101.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.|||
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D 68 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-------------EGKR---------IKAQIWD 68 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-------------CCEE---------EEEEEEE
Confidence 34689999999999999999999988764332221121221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 69 t~G~~~----~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 144 (223)
T 3cpj_B 69 TAGQER----YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144 (223)
T ss_dssp CTTTTT----TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred CCCccc----hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 999742 334567788999999999999876554443 34555543 3689999999999864211 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.. . ...+++++||+.+ .|++++.+.+.+.+...
T Consensus 145 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 145 AQ-----E---NQLLFTETSALNS---------------------------ENVDKAFEELINTIYQK 177 (223)
T ss_dssp HH-----H---TTCEEEECCCC-C---------------------------CCHHHHHHHHHHHHTTC
T ss_pred HH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHHHH
Confidence 11 1 2468999999886 68999998888777653
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=2.9e-13 Score=155.39 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC----------ccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP----------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~----------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
..++|+++|.+|+|||||+|+|++.......... .+..+..-...+....+.++......+...+..+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 4689999999999999999999765322111100 00000000000000000111111100111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCCe-EEEEEeCCCCC
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKKK-VVFVLNKSDLY 504 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~~-vivVlNK~D~~ 504 (921)
..+.||||||. +++...+..++..+|++|+|+|++++.. .+..+.+..+...+.| +|+|+||+|+.
T Consensus 95 --~~~~iiDTPGh----~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 --KHFTILDAPGH----KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred --eEEEEEECCCh----HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 25899999997 4455667777889999999999998754 3555666666667777 99999999996
Q ss_pred CC---hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccchH
Q 002437 505 QN---AFELEEAISFVKENTMKLLNI---ENVTIYPVSARSTL 541 (921)
Q Consensus 505 ~~---~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~~l 541 (921)
.. ++..+++.+.+...+..+ +. ...+++++||+++.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~-g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKV-GFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHh-cccccCCeeEEEeeccCCc
Confidence 42 223444444444433332 32 24689999999983
No 147
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.48 E-value=1.2e-13 Score=143.19 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......... .... ..+.||||
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~l~i~Dt 82 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLET------------EEQR----------VELSLWDT 82 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--------------CE----------EEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEE------------CCEE----------EEEEEEEC
Confidence 4689999999999999999999987753 34445543221111110 0111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHH------
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEE------ 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~------ 512 (921)
||.. .+..++..++..+|++|+|+|++++.+..+ ..++..+... +.|+++|+||+|+..+......
T Consensus 83 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 158 (214)
T 3q3j_B 83 SGSP----YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 158 (214)
T ss_dssp CCSG----GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred CCCH----hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhccccc
Confidence 9974 334456778899999999999998766555 2456666554 6899999999999753111100
Q ss_pred --H-HHHHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccc-hHHHHHHHHHhhcc
Q 002437 513 --A-ISFVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT-FDKLEKLLYSFLDG 583 (921)
Q Consensus 513 --v-~~~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg-~~~L~~~l~~~l~~ 583 (921)
+ .+... .+...+ .. +++.+||+++ .| ++++.+.+.+.+..
T Consensus 159 ~~v~~~~~~-~~~~~~---~~~~~~e~SA~~g---------------------------~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 159 APISYEQGC-AIAKQL---GAEIYLEGSAFTS---------------------------EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CCCCHHHHH-HHHHHH---TCSEEEECCTTTC---------------------------HHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHH-HHHHHc---CCCEEEEeccCCC---------------------------cccHHHHHHHHHHHHhc
Confidence 0 01111 111112 24 8999999987 56 88888877776553
No 148
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.48 E-value=7.4e-15 Score=162.41 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=105.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+.|+|+|.+|+|||||+|+|++.+....+...+|..++...+... ++ ..++|+|||
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~------------~~-----------~~~~l~DtP 214 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD------------DG-----------RSFVMADLP 214 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS------------SS-----------CEEEEEEHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC------------CC-----------ceEEEecCC
Confidence 4579999999999999999999887544455556655443221110 00 248999999
Q ss_pred CCChhhhHH---HHHHHHhcCCCCEEEEEEeCCC---CCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQRQ---QRLTEEFVPRADLVLFVISADR---PLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~~~---~~~~~~~l~~aD~il~V~da~~---~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+....... .....+.+..+|++|+|+|+++ .....+.. ++..+.. ..+|+++|+||+|+....+..
T Consensus 215 G~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~- 293 (342)
T 1lnz_A 215 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENL- 293 (342)
T ss_dssp HHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHH-
T ss_pred CCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHH-
Confidence 974221111 1123344567999999999986 33334433 4455544 368999999999997532211
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
+.+. +.+.. ..+++++||+++ .|+++|.+.|.+.+.+.
T Consensus 294 ---~~l~----~~l~~-~~~v~~iSA~tg---------------------------~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 294 ---EAFK----EKLTD-DYPVFPISAVTR---------------------------EGLRELLFEVANQLENT 331 (342)
T ss_dssp ---HHHH----HHCCS-CCCBCCCSSCCS---------------------------STTHHHHHHHHHHHTSC
T ss_pred ---HHHH----HHhhc-CCCEEEEECCCC---------------------------cCHHHHHHHHHHHHhhC
Confidence 2222 22221 267999999886 68999999998887653
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.48 E-value=3.4e-13 Score=153.07 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=115.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC--------------CCccceeEEEEccCCccchhhcccccCCCeEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV--------------VPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~--------------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 426 (921)
..++|+++|.+++|||||+|+|++..... ... ...|.......+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~------------------- 62 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS------------------- 62 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------------
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------------
Confidence 35789999999999999999998741000 000 0011111111110
Q ss_pred eecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCC
Q 002437 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQ 505 (921)
Q Consensus 427 ~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~ 505 (921)
.. ...+.||||||. .++...+..++..+|++|+|+|++++...+..+.+..+...+.| +++|+||+|+..
T Consensus 63 --~~---~~~~~iiDtpG~----~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 --TA---ARHYAHTDCPGH----ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp --CS---SCEEEEEECSSH----HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred --cC---CeEEEEEECCCh----HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 00 135899999996 34445677788999999999999998888888888777777888 789999999986
Q ss_pred ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccc-hHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT-FDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg-~~~L~~~l~~~l~ 582 (921)
+++.++.+.+.+.+.+... +. ...+++++||+.+.+.. ...|. .| +..|.+.|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~i~~SA~~g~n~~-----------------~~~~~-~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTEF-GYKGEETPIIVGSALCALEQR-----------------DPELG-LKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TSCTTTSCEEECCHHHHHTTC-----------------CTTTT-HHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHc-CCCcccCcEEEeehhhccccc-----------------CCCcc-CCcHHHHHHHHHHhCC
Confidence 4333444444444444433 32 24799999999885310 12343 35 8888888887665
Q ss_pred c
Q 002437 583 G 583 (921)
Q Consensus 583 ~ 583 (921)
.
T Consensus 195 ~ 195 (397)
T 1d2e_A 195 V 195 (397)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.48 E-value=5.9e-14 Score=144.42 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......+.. .... ..+.||||
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~l~i~Dt 83 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEI------------DTQR----------IELSLWDT 83 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEES------------SSSE----------EEEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEE------------CCEE----------EEEEEEeC
Confidence 4689999999999999999999997753 33444443222111110 0111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
||... +......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...
T Consensus 84 ~G~~~----~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 84 SGSPY----YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred CCcHh----hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 99742 334456788999999999999876554543 35555554 36899999999999754
No 151
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.47 E-value=3.7e-13 Score=147.40 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.|++..... .....+|..+....... ++. ..+.+||
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-------------~~~----------~~l~i~D 58 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-------------LGN----------MTLNLWD 58 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-------------TTT----------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-------------CCc----------eEEEEEE
Confidence 35789999999999999999999874322 22333444333322110 011 1489999
Q ss_pred CCCCChhhhHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H---HHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVILQRQ-QRLTEEFVPRADLVLFVISADRPLTESEVV-F---LRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~---l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||.....+.. ...+..++..+|++|+|+|++++.+..+.. + +..+.. .+.|+++|+||+|+... +...+..
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~-~~r~~~~ 137 (307)
T 3r7w_A 59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL-DKREELF 137 (307)
T ss_dssp ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH-HHHHHHH
T ss_pred CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch-hhhhHHH
Confidence 99985432211 356777889999999999999887666653 2 333332 26899999999999853 2222222
Q ss_pred HHHHHH---HHHhhCCCCCeEEEecccc
Q 002437 515 SFVKEN---TMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 515 ~~~~~~---~~~~~~~~~~~v~~vSA~~ 539 (921)
...... +...++....+++++||+.
T Consensus 138 ~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 138 QIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 122222 2222333247999999976
No 152
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=152.69 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=102.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+.. ..||.. ........ .+ ..+.||||
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~pT~~-~~~~~~~~-------------~~-----------~~l~i~Dt 216 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ISFTVWDV 216 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEEETT-EEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--cccccc-eEEEEEec-------------Cc-----------EEEEEEEC
Confidence 45799999999999999999999877532 123222 22111110 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HH-HHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FL-RYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l-~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .+..++..++..+|++|+|+|++++.+..... ++ ..+.. .+.|+++|+||+|+.... ..+++...+
T Consensus 217 ~G~~----~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~ 291 (329)
T 3o47_A 217 GGQD----KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKL 291 (329)
T ss_dssp C---------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHH
T ss_pred CCCH----hHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHh
Confidence 9963 34445777889999999999998776655442 33 33332 378999999999997542 223332222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+++ .|++++.+.|.+.+.
T Consensus 292 ~---~~~~~~~~~~~~~vSAk~g---------------------------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 292 G---LHSLRHRNWYIQATCATSG---------------------------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp T---CTTCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHT
T ss_pred c---hhhhhcCCCEEEEEECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 1 1112224568999999987 689999988887765
No 153
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=1.6e-12 Score=139.13 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=81.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+....+ ..++|.......+.. ++ ..+.|||
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~liD 90 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-------------GG-----------FTINIID 90 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-------------CC-----------eeEEEEE
Confidence 5789999999999999999999998864433 334444333322211 11 2489999
Q ss_pred CCCCChhh---hHHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCCC
Q 002437 442 TPGTNVIL---QRQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-----KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~ 505 (921)
|||+.+.. +...+.+..++ ..+|++|||++.+. .++..+..+++.+... ..|+++|+||+|+..
T Consensus 91 TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 91 TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 99985432 23333344444 47899999988764 3566667777777653 249999999999863
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.20 E-value=4.2e-15 Score=152.55 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+......... .++.. ..+.+|||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 85 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVM-------------VDGKP---------VNLGLWDT 85 (204)
Confidence 4689999999999999999999987653 2333444321111110 01100 13679999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||.. +....+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 86 ~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 86 AGQE----DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 9973 4456677788999999999999877655554 355555544 6899999999999754221111110
Q ss_pred --HHHHHHHHhhCCCCC-eEEEecccch
Q 002437 516 --FVKENTMKLLNIENV-TIYPVSARST 540 (921)
Q Consensus 516 --~~~~~~~~~~~~~~~-~v~~vSA~~~ 540 (921)
........+...... +++++||+++
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g 189 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQ 189 (204)
Confidence 001111111111223 7899999987
No 155
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.46 E-value=3.1e-12 Score=142.37 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHH-H----HHHHHHHh------c-CCCCeEEEEEeCCCCCHHHHHHHHHC---
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEE-V----SLLIDAVS------Q-IDEPFLLVIVGEYNSGKSSVINALLG--- 386 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~----~~l~~~~~------~-~~~~~~I~vvG~~~aGKSTLiNaLlg--- 386 (921)
-.+.+++.+++.+.+++..+++..+.... . +.+..... + ....+.|+++|.+|||||||+|+|++
T Consensus 20 ~~~~~~~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 20 LYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 34667778899999999999998776432 1 11211111 1 23478999999999999999999996
Q ss_pred ---CCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC---------C----------CcccccEEEeCCC
Q 002437 387 ---KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP---------S----------PILKEMIIVDTPG 444 (921)
Q Consensus 387 ---~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p---------~----------~~l~~l~lvDTPG 444 (921)
.++...+..|++....-.-.++. .........+..++...| . ..-.+++|+||||
T Consensus 100 ~~~~~v~V~~~dp~~~~~~g~~l~d~---~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~G 176 (349)
T 2www_A 100 ERGHKLSVLAVDPSSCTSGGSLLGDK---TRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVG 176 (349)
T ss_dssp HTTCCEEEEECCC-------------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred hcCCeEEEEeecCCCCCcCcchhchH---HHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCC
Confidence 23333333343321000000000 000000000000000000 0 0012589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
+... . ......+|++++|+|++.+..... +...+ ...|.++|+||+|+... .........+...+...
T Consensus 177 i~~~---~----~~l~~~~d~vl~V~d~~~~~~~~~--i~~~i--l~~~~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~ 244 (349)
T 2www_A 177 VGQS---E----FAVADMVDMFVLLLPPAGGDELQG--IKRGI--IEMADLVAVTKSDGDLI-VPARRIQAEYVSALKLL 244 (349)
T ss_dssp C--C---H----HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGH-HHHHHHHHHHHHHHTTC
T ss_pred cchh---h----hhHHhhCCEEEEEEcCCcchhHHH--hHHHH--HhcCCEEEEeeecCCCc-hhHHHHHHHHHHHHHhc
Confidence 8521 1 223578999999999986532111 11112 34688999999998732 22222233333322211
Q ss_pred hC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 525 LN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 525 ~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+.++++++||+++ .|+++|.+.|.+.+.
T Consensus 245 ~~~a~~~~~~vi~iSA~~g---------------------------~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 245 RKRSQVWKPKVIRISARSG---------------------------EGISEMWDKMKDFQD 278 (349)
T ss_dssp C-----CCCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred CccccCCCceEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12578999999987 799999999887653
No 156
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.46 E-value=3.1e-13 Score=136.39 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=99.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE-EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT-FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|.|++..+.. ...||..... .+.+ ++.. ..+.+||
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t~~~~~~~~~~---------------~~~~---------~~l~i~D 73 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRFKKEIVV---------------DGQS---------YLLLIRD 73 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCTTCEEEEEEEEE---------------TTEE---------EEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCCcceEEEEEEE---------------CCEE---------EEEEEEE
Confidence 46899999999999999999999876542 2334432111 1111 1111 1378899
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhh----cCCeEEEEEeCCCCCCCh---HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQ----WKKKVVFVLNKSDLYQNA---FELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~----~~~~vivVlNK~D~~~~~---~~~~~v 513 (921)
|||..... ++..+|++++|+|.+++.+..+ ..++..+.. .+.|+++|.||+|+.... -..++.
T Consensus 74 t~G~~~~~---------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 144 (184)
T 3ihw_A 74 EGGPPELQ---------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA 144 (184)
T ss_dssp CSSSCCHH---------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred CCCChhhh---------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH
Confidence 99974221 6678999999999998765555 346666654 357999999999984211 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... . + ...+++.+||+++ .|++++...+.+.+.
T Consensus 145 ~~~~~----~-~--~~~~~~e~Sa~~~---------------------------~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 145 RKLST----D-L--KRCTYYETCATYG---------------------------LNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHH----H-T--TTCEEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHH----H-c--CCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 1 1 1368999999987 688888888776654
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=138.31 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=99.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......... ++.. ..+.||||
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~Dt 76 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETV-------------DHQP---------VHLRVMDT 76 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987743 44555554322111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||...... +..++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 77 ~G~~~~~~-----~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (187)
T 3c5c_A 77 ADLDTPRN-----CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGV 151 (187)
T ss_dssp CC---CCC-----THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred CCCCcchh-----HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHH
Confidence 99743221 24578899999999999976544443 34555543 4789999999999863211 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecc-cchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSA-RSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+... . + ..+++.+|| +.+ .|++++.+.+.+.+
T Consensus 152 ~~~~----~-~---~~~~~e~Sa~~~g---------------------------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 152 ALAG----R-F---GCLFFEVSACLDF---------------------------EHVQHVFHEAVREA 184 (187)
T ss_dssp HHHH----H-H---TCEEEECCSSSCS---------------------------HHHHHHHHHHHHHH
T ss_pred HHHH----H-c---CCcEEEEeecCcc---------------------------ccHHHHHHHHHHHH
Confidence 2221 1 2 368999999 776 57777777776654
No 158
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.44 E-value=4.2e-13 Score=157.26 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=106.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++. ...|| ..+....+... + ..+.|+||
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~T-~~~~~~~~~~~-------------~-----------~~~~l~Dt 373 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPT-VGFNVETVTYK-------------N-----------VKFNVWDV 373 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCC-SSEEEEEEESS-------------S-----------CEEEEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCCc-cceeEEEEEeC-------------C-----------EEEEEEEC
Confidence 4589999999999999999999988743 23333 22322221110 1 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.... ...+..++..+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.... ..+++...+
T Consensus 374 ~G~~~~----~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~ 448 (497)
T 3lvq_E 374 GGQDKI----RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKL 448 (497)
T ss_dssp CCCGGG----SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-CHHHHHHHT
T ss_pred CCcHHH----HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-CHHHHHHHh
Confidence 997433 345778899999999999999876555443 3444322 478999999999997542 222222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .........+++++||+++ .|++++.+.|.+.+..
T Consensus 449 ~---~~~~~~~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 449 G---LTRIRDRNWYVQPSCATSG---------------------------DGLYEGLTWLTSNYKS 484 (497)
T ss_dssp T---CTTCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHCC-
T ss_pred c---hhhhhcCCeEEEEEECCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1 0111223457999999987 7999999999988764
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.43 E-value=5.8e-13 Score=155.09 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-C---------ccceeEEEEccCCccchhhcccccCCCeEEeecCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-P---------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~---------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 431 (921)
...++|+++|.+|+|||||+|+|++......... + ....+......+.......+......+...+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 3578999999999999999999987521110000 0 0000000000000000111111111111111111
Q ss_pred CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCCCC
Q 002437 432 PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKSDL 503 (921)
Q Consensus 432 ~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~D~ 503 (921)
-..+.||||||.. ++...+..++..+|++|+|+|++++ ......+.+..+...+ +|+|+|+||+|+
T Consensus 110 --~~~~~iiDTPG~~----~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 110 --RANFTIVDAPGHR----DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp --SCEEEEECCCCCG----GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred --CceEEEEECCCcH----HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 1358999999983 4456677888999999999999986 3345556666666655 569999999999
Q ss_pred CCC-hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 504 YQN-AFELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 504 ~~~-~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
... ....+++.+.+...+..+ +. ...+++++||+.+
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~-g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDI-GFFEDNINWVPISGFSG 222 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHH-TCCGGGEEEEECCSSSC
T ss_pred ccchHHHHHHHHHHHHHHHHHc-CCCcccceEEEEeeecC
Confidence 853 344555666665554433 22 2478999999987
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.43 E-value=2.6e-13 Score=149.98 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.+++..+. ....+|+.......... ++.. ..+.++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D 209 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWD 209 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEEEEE-------------CCEE---------EEEEEEe
Confidence 46799999999999999999999987653 34455554322211110 1110 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF- 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~- 516 (921)
|||... .......++..+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.....
T Consensus 210 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 210 TAGLED----YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp ECCCGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred CCCchh----hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccc
Confidence 999743 334566788999999999999876655554 345555543 78999999999997553222211110
Q ss_pred ----HHHHHHHhhCCCC-CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 ----VKENTMKLLNIEN-VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ----~~~~~~~~~~~~~-~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+..... .+++++||+++ .|++++.+.+.+.+.
T Consensus 286 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 286 LTPITYPQGLAMAKEIGAVKYLECSALTQ---------------------------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEEecCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 0001111111112 48999999987 688888888876654
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.8e-13 Score=159.24 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=101.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC----------CccceeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV----------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~----------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
.....++|+++|.+|+|||||+|+|++......... .....+......+.......+......+...+..
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 345678999999999999999999998743221100 0000000000000000000111111111111111
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCC
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKS 501 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~ 501 (921)
+ -..+.||||||+. .+...+..++..+|++|+|+|++++ ...+..+.+..+...+ +|+|+|+||+
T Consensus 243 ~---~~~~~iiDTPG~e----~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 243 H---RANFTIVDAPGHR----DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp S---SCEEEEEECCSSS----CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred C---CceEEEEECCCCc----ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 1 1358999999973 4556677888999999999999864 2334455555555555 4699999999
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 502 DLYQN-AFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 502 D~~~~-~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
|+... ....+++...+...+..+ +. ...+++++||+++.
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~-g~~~~~~~~i~vSA~tG~ 357 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDI-GFFEDNINWVPISGFSGE 357 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHH-TCCGGGCEEEECCTTTCT
T ss_pred cccchhHHHHHHHHHHHHHHHHhh-cccccCccEEeeecccCC
Confidence 99863 334555555555544433 32 24789999999884
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.43 E-value=1e-12 Score=153.66 Aligned_cols=129 Identities=18% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CC-------CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--GV-------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI 433 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~-------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 433 (921)
..++|+|+|.+|+|||||+|+|++...... +. ..++.. .......+..........+.+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d--------~~~~e~~~GiTi~~~~~~~~~~--- 80 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSD--------WMELEKQRGISVTTSVMQFPYK--- 80 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHH--------HHHHHHHHCCSSSSSEEEEEET---
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecc--------cchhhhcCCeeEEEeEEEEEeC---
Confidence 468999999999999999999974321110 00 000000 0000000111111111111111
Q ss_pred ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 434 LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 434 l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
...++||||||+.... ..+..++..+|++|+|+|+.++.+.....++..+...+.|+++|+||+|+...
T Consensus 81 ~~~i~liDTPG~~df~----~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLDTPGHADFT----EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEECCCCSTTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CEEEEEEECCCchhHH----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 0258999999985443 34778889999999999999999999999999998889999999999999754
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=6.7e-13 Score=148.67 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||+|+|+. ...|.......+.... ..+.||||||.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~------------------------~~i~iiDtPGh 70 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG------------------------RNMVFVDAHSY 70 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS------------------------SEEEEEECTTT
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC------------------------eEEEEEECCCh
Confidence 899999999999999999981 1122222222221110 24899999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEe-CCCCCCChHHHHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLN-KSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlN-K~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
... ...+...+..+|++|+|+| +.....+..+.+..+...+.|. ++|+| |+|+ +.+..+++.+.+.+.+..
T Consensus 71 ~~f----~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl--~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 71 PKT----LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST--HMHAIDELKAKLKVITSG 143 (370)
T ss_dssp TTC----HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS--CHHHHHHHHHHHHHHTTT
T ss_pred HHH----HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC--CHHHHHHHHHHHHHHHHh
Confidence 533 3345566789999999999 7777777777777777777777 89999 9999 433344444444443332
Q ss_pred hhCCCCCeEEE--ecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 524 LLNIENVTIYP--VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 524 ~~~~~~~~v~~--vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +....++++ +||+.+ .| ..|+++|.+.|.+.+.
T Consensus 144 ~-~~~~~~ii~~~~SA~~~-----------------------~~-g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 144 T-VLQDWECISLNTNKSAK-----------------------NP-FEGVDELKARINEVAE 179 (370)
T ss_dssp S-TTTTCEEEECCCCTTSS-----------------------ST-TTTHHHHHHHHHHHHH
T ss_pred c-CCCceEEEecccccccC-----------------------cC-CCCHHHHHHHHHhhcc
Confidence 2 223579999 999883 02 2688888877766544
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.43 E-value=1.6e-12 Score=148.37 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=109.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCC-CCccceeEEEE--ccCCcc--chhhcccccCC-CeEEeecCCCc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGV-VPTTNEITFLR--FSDLAS--EEQQRCERHPD-GQYICYLPSPI 433 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~-~~tT~~~~~~~--~~~~~~--~~~~~~~~~~~-g~~~~~~p~~~ 433 (921)
...++|+++|.+++|||||+|+|+|.... +... ...|....+.. +...+. .+.... ..+. +.. ...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~-~~~~~g~~-----~~~ 81 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP-VCPYCGHE-----TEF 81 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSS-BCTTTCCB-----CEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccc-cccccCcc-----ccc
Confidence 34579999999999999999999976421 1111 11232221111 000000 000000 0000 100 000
Q ss_pred ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHH
Q 002437 434 LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 434 l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~ 511 (921)
...+.||||||. +.+...+...+..+|++|+|+|++++. ..+..+.+..+...+ +|+++|+||+|+... +...
T Consensus 82 ~~~i~iiDtPGh----~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-~~~~ 156 (410)
T 1kk1_A 82 VRRVSFIDAPGH----EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKAL 156 (410)
T ss_dssp EEEEEEEECSSH----HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHH
T ss_pred ccEEEEEECCCh----HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-HHHH
Confidence 135899999996 334445666678899999999999876 566666555555444 589999999999853 3333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+..+.+.+.+... .....+++++||+++ .|++.|.+.|.+.+..
T Consensus 157 ~~~~~i~~~l~~~-~~~~~~~i~vSA~~g---------------------------~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFIEGT-VAENAPIIPISALHG---------------------------ANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhc-CcCCCeEEEeeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 3334444333321 124579999999987 6888898888876653
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.42 E-value=2.5e-13 Score=140.75 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=86.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+|+|.+|+|||||+|+|++..+.+. ...|++.. .+ ....+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~----~~--------------------------~~~~~~l 59 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY--------------------------DGSGVTL 59 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET----TG--------------------------GGSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE----Ee--------------------------eCceEEE
Confidence 3578999999999999999999998775432 12222210 00 0025899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC-CCCC-HHHHHHHHHhh-------hcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD-RPLT-ESEVVFLRYTQ-------QWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~-~~~t-~~e~~~l~~l~-------~~~~~vivVlNK~D~~~~~~~~ 510 (921)
+||||+.................+|++|||+|++ ++.+ .....++..+. ..+.|+++|+||+|+... ...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~ 138 (218)
T 1nrj_B 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPP 138 (218)
T ss_dssp EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCH
T ss_pred EECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCH
Confidence 9999986443333333333334499999999998 4333 22223343332 247899999999999865 333
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
.++.+.+...+..+......+++.+||+.+.+
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 139 SKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44444444444333222235688899988754
No 166
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.42 E-value=2.3e-15 Score=153.90 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=94.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......++.......+.. ++.. ..+.||||
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 89 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 89 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987754322222222222111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .++...
T Consensus 90 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-- 163 (199)
T 3l0i_B 90 AGQERF----RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE-- 163 (199)
T ss_dssp TTCTTC----CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CH--
T ss_pred CCcHhH----HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHH--
Confidence 996422 23455678999999999999987554443 35555543 36899999999998643110 011111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.|.+.+.
T Consensus 164 ---~~~~---~~~~~~~vSA~~g---------------------------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 164 ---FADS---LGIPFLETSAKNA---------------------------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---HHHT---TTCCBCCCCC------------------------------HHHHHHHHHHTTTTT
T ss_pred ---HHHH---cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2467999999887 678888888776655
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.41 E-value=1.4e-12 Score=149.79 Aligned_cols=171 Identities=19% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCccceeEEEEc-cCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTTNEITFLRF-SDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
..++|+++|.+++|||||+|+|++....... ..++|.....+.+ .+....+..+......+...+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4579999999999999999999876421111 1112211000000 000000001111111111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCC-hH
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQN-AF 508 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~-~~ 508 (921)
...+.||||||... +...+..++..+|++|+|+|++++...+..+++..+...+. |+++|+||+|+... ++
T Consensus 103 ---~~~~~iiDtpGh~~----f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 103 ---KRKFIIADTPGHEQ----YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ---SEEEEEEECCCSGG----GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH
T ss_pred ---CceEEEEECCChHH----HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH
Confidence 12589999999743 33446667899999999999999888777777776666664 69999999999863 33
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCeEEEecccchH
Q 002437 509 ELEEAISFVKENTMKLLN--IENVTIYPVSARSTL 541 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~--~~~~~v~~vSA~~~l 541 (921)
.++++.+.+.+.+..+ + ....+++++||+++.
T Consensus 176 ~~~~i~~~~~~~~~~~-g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 176 VFESIKADYLKFAEGI-AFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp HHHHHHHHHHHHHHTT-TCCCSEEEEEECCTTTCT
T ss_pred HHHHHHHHHHHHHHHh-CCCccCceEEEEeccCCC
Confidence 3444555554444332 3 234789999999873
No 168
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=99.41 E-value=2.4e-13 Score=142.16 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=121.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH----HHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeE--EcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG----KSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGV--LLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~----~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~Gv--HL~~~~ 168 (921)
++.+.++.+.++|++++|+|.++.+- ..-.+.++.+++.|. . .+.|++|| +++.+.++|+||| |..+.+
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~~~ 99 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR 99 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCT
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 77889999999999999999654320 011367888888885 3 78899999 5899999999999 888888
Q ss_pred CC-HHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccC---CCCEEEeCCC----CCCCC---Ccc-hhhhhhcC
Q 002437 169 LP-AIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSE---GADFLVCCFG----EGQKA---DVI-ENSLFTNV 234 (921)
Q Consensus 169 l~-~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~---gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~ 234 (921)
.+ ...+|.+.+ .+ . .+|.++ |+..+..++ ... ++||+.++++ ++... ++. .+++++..
T Consensus 100 ~~~~~~~~~i~~---~g-~---~igv~~~p~t~~e~~~~-~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~ 171 (228)
T 1h1y_A 100 DNWQELIQSIKA---KG-M---RPGVSLRPGTPVEEVFP-LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY 171 (228)
T ss_dssp TTHHHHHHHHHH---TT-C---EEEEEECTTSCGGGGHH-HHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC
T ss_pred cHHHHHHHHHHH---cC-C---CEEEEEeCCCCHHHHHH-HHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc
Confidence 77 666666653 33 2 466777 665554444 334 8999999988 22221 222 36666666
Q ss_pred -CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 -KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 -~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++++++.++.++.
T Consensus 172 ~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 172 PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGA 207 (228)
T ss_dssp TTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 89999999999999999999999999999888764
No 169
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.41 E-value=4.4e-13 Score=138.84 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=100.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||++.++...+. ....||.. .+...... ..+..+ .+.||||
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~------------~~~~~v----------~l~iwDt 69 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMY------------LEDRTI----------RLQLWDT 69 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEE------------CSSCEE----------EEEEECC
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEE------------ecceEE----------EEEEEEC
Confidence 489999999999999999999977653 34444432 11111110 011111 4789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~ 517 (921)
+|.. ++..++..|++.+|++++|+|.+++.+..+.. ++..+. ....|+++|.||+|+.... -..++..+..
T Consensus 70 aGqe----~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a 145 (216)
T 4dkx_A 70 AGLE----RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 145 (216)
T ss_dssp SCTT----TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCch----hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence 9974 44456788999999999999999766555443 444443 3457999999999986421 1122322222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .+ +.+++.+||+++ .|++++...|.+.+.
T Consensus 146 ~-----~~---~~~~~e~SAktg---------------------------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 146 K-----EL---NVMFIETSAKAG---------------------------YNVKQLFRRVAAALP 175 (216)
T ss_dssp H-----HH---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHHC-
T ss_pred H-----Hh---CCeeEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 2 12 367999999997 688888888776654
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.40 E-value=2.6e-12 Score=146.35 Aligned_cols=183 Identities=22% Similarity=0.256 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC-CCccceeEEEEccCCc--cchhhccc-ccCC-CeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV-VPTTNEITFLRFSDLA--SEEQQRCE-RHPD-GQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~-~~tT~~~~~~~~~~~~--~~~~~~~~-~~~~-g~~~~~~p~~~l~ 435 (921)
..++|+++|.+++|||||+|+|+|..... ... ...|....+....... ........ ..+. |.. .....
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~-----~~~~~ 81 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAE-----TEFLR 81 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCB-----CEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcc-----ccccc
Confidence 56899999999999999999999764221 111 1123222111000000 00000000 0000 100 00013
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.||||||. +.+...+...+..+|++|+|+|++++. ..+..+.+..+...+ +|+++|+||+|+.... ...+.
T Consensus 82 ~i~iiDtPGh----~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~-~~~~~ 156 (408)
T 1s0u_A 82 RVSFVDSPGH----ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK-QAEEN 156 (408)
T ss_dssp EEEEEECSSH----HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT-TTTTH
T ss_pred EEEEEECCCH----HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH-HHHHH
Confidence 5899999995 344445566678889999999999876 566666665555544 5899999999998642 21122
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+.+.+... .....+++++||+++ .|+++|.+.|.+.+..
T Consensus 157 ~~~i~~~l~~~-~~~~~~~i~vSA~~g---------------------------~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGT-IAENAPIIPISAHHE---------------------------ANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTS-TTTTCCEEEC---------------------------------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhc-CCCCCeEEEeeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22333333221 224578999999987 6888888888876653
No 171
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=1.8e-12 Score=133.88 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=97.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.+++.... .....+++......... .+|.. ..+.++|
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~-------------~~~~~---------~~l~~~D 93 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-------------VDGES---------ATIILLD 93 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEE-------------ECCee---------eEEEEee
Confidence 4589999999999999999999986432 22222222221111000 01111 1368999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|+|.... ...+...+...+|++|+|+|.++..+..... ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 94 t~g~~~~---~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~ 170 (211)
T 2g3y_A 94 MWENKGE---NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA 170 (211)
T ss_dssp CTTTTHH---HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred cCCCcch---hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH
Confidence 9997531 2335566778899999999998755444432 4444432 3689999999999863210 1111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 171 -----~a~~~---~~~~~e~SAk~g---------------------------~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 171 -----CAVVF---DCKFIETSAAVQ---------------------------HNVKELFEGIVRQVR 202 (211)
T ss_dssp -----HHHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHHHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 368999999987 688888887766543
No 172
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.40 E-value=8.1e-13 Score=133.18 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=95.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC-CCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR-YLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|.|.+.. .......||+. .....+.... ...++. ...+.++||
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g-~~~~~~~~~~--------~~~~~~---------~~~~~i~Dt 63 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG-IDVKDWPIQI--------RDKRKR---------DLVLNVWDF 63 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CS-EEEEEEEC--------------------------CEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceecc-EEeEEeeecc--------ccCCCC---------ceEEEEEec
Confidence 3789999999999999999999863 22222333332 2211111000 000000 014789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||.. +...+...++..+|++++|+|.+++. +.... .++..+.. .+.|+++|.||+|+... ...........
T Consensus 64 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~ 138 (184)
T 2zej_A 64 AGRE----EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE-KQRKACMSKIT 138 (184)
T ss_dssp CSHH----HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH-HHHHHHHHHHH
T ss_pred CCCH----HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc-hhhHHHHHHHH
Confidence 9963 33445566778899999999998753 22222 34555443 36899999999999743 22222222222
Q ss_pred HHHHHhhCCCCCe----EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVT----IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~----v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+... ...+ ++++||+++ ..+|..|.+.+.+.+..
T Consensus 139 ~~~~~~---~~~~~~~~~~~~Sa~~~--------------------------~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 139 KELLNK---RGFPAIRDYHFVNATEE--------------------------SDALAKLRKTIINESLN 178 (184)
T ss_dssp HHTTTC---TTSCEEEEEEECCTTSC--------------------------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHh---cCCcchhheEEEecccC--------------------------chhHHHHHHHHHHHHhc
Confidence 222221 2233 899999886 13788888888776653
No 173
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.39 E-value=1.1e-14 Score=169.55 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=110.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+++|+++|.+|+|||||+|+|++.++.......+|..+....... +.+ ..++|||
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~------------~~g-----------~~i~~iD 58 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL------------PSG-----------EKITFLD 58 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS------------SCS-----------SCCBCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe------------CCC-----------CEEEEEE
Confidence 45789999999999999999999987654433333343322211110 011 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||.... ...+..++..+|++|+|+|++++.+.+..+.+..+...+.|+++|+||+|+..... +.+...+...
T Consensus 59 TPGhe~f----~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~--~~v~~~l~~~- 131 (537)
T 3izy_P 59 TPGHAAF----SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP--EKVKKELLAY- 131 (537)
T ss_dssp CSSSCCT----TTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC--CSSSSHHHHT-
T ss_pred CCChHHH----HHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch--HHHHHHHHhh-
Confidence 9997433 23455677899999999999999999999999988888999999999999874311 1111111110
Q ss_pred HHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 522 MKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 522 ~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...... ...+++++||+++ .|+++|.+.+...+
T Consensus 132 ~~~~e~~~~~~~iv~vSAktG---------------------------~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 DVVCEDYGGDVQAVHVSALTG---------------------------ENMMALAEATIALA 166 (537)
T ss_dssp TSCCCCSSSSEEECCCCSSSS---------------------------CSSHHHHHHHHHHH
T ss_pred hhhHHhcCCCceEEEEECCCC---------------------------CCchhHHHHHHHhh
Confidence 000000 2468999999987 57777777776654
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.39 E-value=4e-13 Score=158.86 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce--eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE--ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
++++|+++|++++|||||+|+|++..+........|.. .....+.... .... ....+. ...+ ....+.||
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~---~~~~-~~~~~~-~v~~---~~~~i~li 75 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIE---GICG-DFLKKF-SIRE---TLPGLFFI 75 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHH---HHSC-GGGGGC-GGGG---TCCEEEEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhh---hhcc-cccccc-cccc---ccCCEEEE
Confidence 46899999999999999999999865432211112211 1222111000 0000 000000 0000 00148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
||||..+.. .....++..+|++|+|+|++++...+..+.+..+...+.|+++|+||+|+..
T Consensus 76 DTPGhe~F~----~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 76 DTPGHEAFT----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCCTTSCCT----TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred ECCCcHHHH----HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 999985442 2234567889999999999998888888888888888999999999999964
No 175
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.39 E-value=1.7e-13 Score=142.44 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc---cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT---TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t---T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|.++...... ...++ |.....+.... +. ..+.+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~--------------~~----------~~~~i 68 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR--------------GP----------IKFNV 68 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTC-EEETTTTEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECC--------------EE----------EEEEE
Confidence 46899999999999999999955433211 11122 21111111111 01 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||||.. .+......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .+....
T Consensus 69 ~Dt~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~ 143 (221)
T 3gj0_A 69 WDTAGQE----KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVF 143 (221)
T ss_dssp EEECSGG----GTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC-GGGCCH
T ss_pred EeCCChH----HHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc-HHHHHH
Confidence 9999963 2334466778899999999999976544433 34444544 26799999999999754211 111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.. . ...+++++||+++ .|++++...+.+.+...
T Consensus 144 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 144 HR-----K---KNLQYYDISAKSN---------------------------YNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HH-----H---HTCEEEECBGGGT---------------------------BTTTHHHHHHHHHHHTC
T ss_pred HH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHHhC
Confidence 11 1 2468999999987 68888888887776543
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=2.8e-12 Score=157.55 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=100.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+++|||||+|+|++.... .+... ......+ +....+.++........+..... ...+.|||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~-~G~a~-f~~~a~l---D~~~~ErerGITIdva~v~f~~~---~~kI~IID 365 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAK-TYGGA-ARAFDQI---DNAPEEKARGITINTSHVEYDTP---TRHYAHVD 365 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHH-HSCC-------------------------CCSCEEEECS---SCEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhcc-ccccc-ccccccc---ccccccccCceeEEEEEEEEcCC---CEEEEEEE
Confidence 34589999999999999999999864100 00000 0000000 00000000000000011111000 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. .++...+..++..+|++|+|+|++++...+..+++..+...+.| +|+|+||+|+..+++.++.+.+.+.+.
T Consensus 366 TPGH----edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 366 CPGH----ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp CCCH----HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCh----HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 9996 34455677788999999999999988777777777777777888 899999999986543344444444444
Q ss_pred HHHhhCC--CCCeEEEecccchH
Q 002437 521 TMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~~~~--~~~~v~~vSA~~~l 541 (921)
+... +. ...+++++||+++.
T Consensus 442 Lk~~-G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 442 LSQY-DFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHHT-TSCTTTCCEEECCSTTTT
T ss_pred HHhc-cccccceeEEEEEeccCC
Confidence 4332 22 35789999999883
No 177
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.37 E-value=2.4e-11 Score=134.94 Aligned_cols=218 Identities=18% Similarity=0.168 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCC
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDG 393 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~ 393 (921)
-.+..++.+++.+.+.+..++........ ...+.... ........|+++|.+|+|||||+|.|.+ .++...+
T Consensus 12 ~~~~~~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 12 SIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45667788899999999998876544332 22333332 3456778999999999999999999963 3433333
Q ss_pred CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------------------c-ccccEEEeCCCCChhhhHHHH
Q 002437 394 VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------------------I-LKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 394 ~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------------------~-l~~l~lvDTPG~~~~~~~~~~ 454 (921)
..|.+....-..+++... .......+.+ +++..+.. . ..+++||||||+.....
T Consensus 92 ~d~~~~~~~~~il~d~~~--~~~~~~~~~~-~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---- 164 (341)
T 2p67_A 92 VDPSSPVTGGSILGDKTR--MNDLARAEAA-FIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---- 164 (341)
T ss_dssp ECCC-----------------CTTTTCTTE-EEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----
T ss_pred ecCCcCCCCcceecccch--HHhhccCCCc-eeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH----
Confidence 333221100000000000 0000000111 11111100 0 13699999999863221
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC----CCC
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI----ENV 530 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~----~~~ 530 (921)
.....+|++|+|+|++.+.. .+.+.. ...+.|+++|+||+|+... .+.....+.++..+.. +.. +.+
T Consensus 165 ---~~~~~aD~vl~Vvd~~~~~~---~~~l~~-~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~-~~~~~~~~~~ 235 (341)
T 2p67_A 165 ---EVARMVDCFISLQIAGGGDD---LQGIKK-GLMEVADLIVINKDDGDNH-TNVAIARHMYESALHI-LRRKYDEWQP 235 (341)
T ss_dssp ---HHHTTCSEEEEEECC---------CCCCH-HHHHHCSEEEECCCCTTCH-HHHHHHHHHHHHHHHH-SCCSBTTBCC
T ss_pred ---HHHHhCCEEEEEEeCCccHH---HHHHHH-hhhcccCEEEEECCCCCCh-HHHHHHHHHHHHHHHh-ccccccCCCC
Confidence 13589999999999875421 111110 1124688999999999743 2333333344433322 121 246
Q ss_pred eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 531 TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 531 ~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++++||+++ .|++.|.+.|.+.+.
T Consensus 236 ~vi~iSA~~g---------------------------~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 236 RVLTCSALEK---------------------------RGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEEECBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred cEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 8999999987 799999998887653
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.37 E-value=8.9e-13 Score=152.19 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=72.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcCCe-EEEEEeCCCCCC-C
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWKKK-VVFVLNKSDLYQ-N 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~~~-vivVlNK~D~~~-~ 506 (921)
.+.||||||.. .+...+..++..+|++|+|+|++++..+ +..+.+..+...+.| +|+|+||+|+.. +
T Consensus 86 ~~~iiDtPGh~----~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 86 QVTVIDAPGHR----DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEECCCCT----THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTC
T ss_pred eEEEEECCCcH----HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCC
Confidence 58999999974 4555677888999999999999865332 444455555556654 999999999984 3
Q ss_pred hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchHH
Q 002437 507 AFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTLE 542 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~ 542 (921)
++.++.+.+.+...+..+ +. ...+++++||+.+.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~-g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKV-GYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCGGGCCEEECCTTTCBT
T ss_pred HHHHHHHHHHHHHHHHHc-CCCccCceEEEeecccCcC
Confidence 444555666665554443 32 247899999998743
No 179
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.36 E-value=2.6e-12 Score=151.42 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=106.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC-C-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY-L-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~-~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~ 438 (921)
..++|+++|+.++|||||+|+|+...- . ..+...+. .+....+.++..........+.+.. .....++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~--------~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~in 76 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQL--------LDTLDVERERGITVKMQAVRMFYKAKDGNTYKLH 76 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-------------------------------CCCCSEEEEEECTTSCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccc--------cccchhhhcccceeeeeEEEEEEEcCCCCeEEEE
Confidence 457899999999999999999986311 1 00000000 0000000111111111111111110 0002488
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+.. ..+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.
T Consensus 77 liDTPGh~dF~----~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~--~~~v~~e-- 148 (600)
T 2ywe_A 77 LIDTPGHVDFS----YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD--VDRVKKQ-- 148 (600)
T ss_dssp EECCCCSGGGH----HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHH--
T ss_pred EEECCCcHhHH----HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC--HHHHHHH--
Confidence 99999985443 345667789999999999999988888887777777889999999999997542 2333333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.++....+++++||+++ .|+++|.+.+.+.+..
T Consensus 149 --l~~~lg~~~~~vi~vSAktg---------------------------~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 149 --IEEVLGLDPEEAILASAKEG---------------------------IGIEEILEAIVNRIPP 184 (600)
T ss_dssp --HHHTSCCCGGGCEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred --HHHhhCCCcccEEEEEeecC---------------------------CCchHHHHHHHHhccc
Confidence 33344544446999999987 5788888877776654
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.36 E-value=1.3e-11 Score=126.75 Aligned_cols=166 Identities=21% Similarity=0.348 Sum_probs=102.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.....+|+++|++|+|||||+|+|+|.... .....+ +|.....+.+. .++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~---------------------------~~~~ 75 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA---------------------------DGKR 75 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE---------------------------TTEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec---------------------------CCEE
Confidence 346789999999999999999999997631 111111 11111111100 1478
Q ss_pred EEeCCCCChhh------hHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHH
Q 002437 439 IVDTPGTNVIL------QRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 439 lvDTPG~~~~~------~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~ 509 (921)
++||||+.... .........++ ..+|.+++|+|+..+.+..+.++...+...+.|+++|.||+|+... .+
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~-~~ 154 (210)
T 1pui_A 76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS-GA 154 (210)
T ss_dssp EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH-HH
T ss_pred EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc-hh
Confidence 99999984210 12222333343 6789999999999887776666666667778999999999998854 22
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 510 LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.....+...+.+. . ....++++||+.+ .|++++.+.+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~-~-~~~~~~~~Sal~~---------------------------~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 155 RKAQLNMVREAVLAF-N-GDVQVETFSSLKK---------------------------QGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHGGG-C-SCEEEEECBTTTT---------------------------BSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc-C-CCCceEEEeecCC---------------------------CCHHHHHHHHHHHHhh
Confidence 221122333333221 1 1357889999876 6888998888877653
No 181
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.36 E-value=2.6e-12 Score=151.69 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=103.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~ 438 (921)
..++|+|+|+.++|||||+++|+...-... ....+. .+....+.++..........+.+.. .-...++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~--------~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~ 74 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQV--------LDSMDLERERGITIKAQSVTLDYKASDGETYQLN 74 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC----------------------------------CEEEEEEECTTSCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccc--------cccchhhhcccceeeeeEEEEEEecCCCCeEEEE
Confidence 457899999999999999999986321110 000000 0000000011111111111111110 0002489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+. ...+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.+
T Consensus 75 liDTPGh~dF----~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~--~~~v~~ei- 147 (599)
T 3cb4_D 75 FIDTPGHVDF----SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD--PERVAEEI- 147 (599)
T ss_dssp EEECCCCGGG----HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHH-
T ss_pred EEECCCchHH----HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc--HHHHHHHH-
Confidence 9999998543 3446677888999999999998888777777777777889999999999997542 23333333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.++....+++++||+++ .|+++|.+.+.+.+..
T Consensus 148 ---~~~lg~~~~~vi~vSAktg---------------------------~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 148 ---EDIVGIDATDAVRCSAKTG---------------------------VGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---HHHTCCCCTTCEEECTTTC---------------------------TTHHHHHHHHHHHSCC
T ss_pred ---HHHhCCCcceEEEeecccC---------------------------CCchhHHHHHhhcCCC
Confidence 3334544456999999987 5777777777776654
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.7e-12 Score=130.00 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=84.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+|+|.+|+|||||+|+|++..+.+. +..|++.. .+ .+ ..+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~----~~---------------~~-----------~~~~l 95 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY---------------DG-----------SGVTL 95 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC---------------CC-----------TTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee----ee---------------cC-----------CeEEE
Confidence 4678999999999999999999998865331 11121110 00 00 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC-CCCCHHHH-HHHHHhh-------hcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD-RPLTESEV-VFLRYTQ-------QWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~-~~~t~~e~-~~l~~l~-------~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||...............+..+|++|||+|++ ++.+..+. .++..+. ..+.|+++|+||+|+... ...
T Consensus 96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~ 174 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPP 174 (193)
T ss_dssp EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCH
T ss_pred EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC-CCH
Confidence 9999986554444455555667799999999998 43222221 2333322 137899999999999854 345
Q ss_pred HHHHHHHHHHHHHh
Q 002437 511 EEAISFVKENTMKL 524 (921)
Q Consensus 511 ~~v~~~~~~~~~~~ 524 (921)
+++.+.+.+.+..+
T Consensus 175 ~~~~~~l~~~l~~l 188 (193)
T 2ged_A 175 SKIKDALESEIQKV 188 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666655544
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=4.9e-12 Score=142.82 Aligned_cols=107 Identities=21% Similarity=0.111 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEE--cc-CCccchhhcccccCC-CeEEeecCCCcccccEEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLR--FS-DLASEEQQRCERHPD-GQYICYLPSPILKEMIIV 440 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~--~~-~~~~~~~~~~~~~~~-g~~~~~~p~~~l~~l~lv 440 (921)
++|+++|.+|+|||||+|+|++.+....+...||..++... +. ..+....... ..+. +... -+ .-...+.||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~-~~p~~~~~~--~~-~~~~~i~lv 76 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCS-PNPQNYEYR--NG-LALIPVKMV 76 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCS-CCCSSSCEE--TT-EEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhh-ccccccccc--CC-cceEEEEEE
Confidence 47999999999999999999998843344445665443322 10 0000000000 0000 0000 00 000148999
Q ss_pred eCCCCChhhhHHHHHHH---HhcCCCCEEEEEEeCCCC
Q 002437 441 DTPGTNVILQRQQRLTE---EFVPRADLVLFVISADRP 475 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~---~~l~~aD~il~V~da~~~ 475 (921)
||||+.........+.. .+++.+|++++|+|+.++
T Consensus 77 DtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 77 DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99998532222222333 346899999999999764
No 184
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.32 E-value=4.2e-12 Score=145.79 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=70.9
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCC-
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWKK-KVVFVLNKSDLYQN- 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~- 506 (921)
.+.||||||.. ++...+..++..+|++|+|+|++++ ...+..+.+..+...+. ++++|+||+|+...
T Consensus 85 ~~~iiDtpG~~----~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 85 FFTIIDAPGHR----DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp EEEECCCSSST----THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred EEEEEECCCcH----HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 58999999974 3445577789999999999999975 33344455555555564 69999999999862
Q ss_pred --hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccch
Q 002437 507 --AFELEEAISFVKENTMKLL-NIENVTIYPVSARST 540 (921)
Q Consensus 507 --~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~ 540 (921)
++.++.+.+.+.+.+...- .....+++++||+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 3344555566655554431 112478999999987
No 185
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.30 E-value=3.3e-12 Score=129.77 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=93.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.|++... ......+++......... .+|.. ..+.++|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------~~l~~~D 62 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM-------------VDGES---------ATIILLD 62 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE-------------ECCeE---------EEEEEEE
Confidence 458999999999999999999997432 122222222221111000 01111 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|+|.... ...+...++..+|++++|+|.++..+..... ++..+.. .+.|+++|.||+|+..... ..++..
T Consensus 63 t~~~~~~---~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~- 138 (192)
T 2cjw_A 63 MWENKGE---NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR- 138 (192)
T ss_dssp CCCC-------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-
T ss_pred eccCcch---hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-
Confidence 9997431 1123345567799999999998755444432 3333332 3689999999999863210 111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... ...+++++||+++ .|++++...+.+.+.
T Consensus 139 ----~~a~~---~~~~~~e~SA~~g---------------------------~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 139 ----AXAVV---FDXKFIETSAAVQ---------------------------HNVKELFEGIVRQVR 171 (192)
T ss_dssp ----HHHHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred ----HHHHH---hCCceEEeccccC---------------------------CCHHHHHHHHHHHHH
Confidence 11111 2368999999987 688888877766543
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.30 E-value=4.3e-12 Score=146.81 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=65.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCCe-EEEEEeCCCCCC--
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKKK-VVFVLNKSDLYQ-- 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~~-vivVlNK~D~~~-- 505 (921)
.+.||||||.. .+...+..++..+|++|+|+|++++.. .+..+.+..+...+.| +++|+||+|+..
T Consensus 122 ~~~iiDtPGh~----~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 122 RFSLLDAPGHK----GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEECCCCC---------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred EEEEEECCCcH----HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 58999999973 344456677899999999999987631 1333445555566776 999999999964
Q ss_pred -ChHHHHHHHHHHHHHHHHhhCCC---CCeEEEecccchH
Q 002437 506 -NAFELEEAISFVKENTMKLLNIE---NVTIYPVSARSTL 541 (921)
Q Consensus 506 -~~~~~~~v~~~~~~~~~~~~~~~---~~~v~~vSA~~~l 541 (921)
+++.++.+...+...+....+.. ..+++++||+.+.
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 23445556666665555442332 5789999999873
No 187
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=99.30 E-value=1.7e-12 Score=137.99 Aligned_cols=164 Identities=10% Similarity=0.019 Sum_probs=125.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe------cCcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI------AERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv------nd~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.|++++++.+.......+..+.++|+. +.++++ +++++.+.+.||||||++...+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p 111 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 111 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhCc
Confidence 677888888899999999999876533334455667777777 899999 67788888999999999987653
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecCC--------------------HHHHHcccccCCCCEEEeCCCCC--CCCC--
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQT--------------------LDAAFNASSSEGADFLVCCFGEG--QKAD-- 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h~--------------------~~e~~~A~~~~gaDyv~~gpvTk--~~~g-- 224 (921)
...++...+ ++ .+ .+|++||+ .+.+.++ .+.|++++++.+++. ...|
T Consensus 112 ~~~~~~~~~~~---~~-~i--~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~g~~~g~~ 184 (252)
T 1ka9_F 112 ELIRELADHFG---AQ-AV--VLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKG-VELGAGEILLTSMDRDGTKEGYD 184 (252)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHHTCCEEEEEETTTTTTCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEEecCCCCEEEEECCCccccCCcHHHHHHHH-HHcCCCEEEEecccCCCCcCCCC
Confidence 334444443 33 22 47888862 5667888 789999998876522 2233
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++ ..++++.+++||+|.|||+ ++|+.++.++|++||++.+|.++..
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 43 4788888899999999998 5999999999999999999888764
No 188
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.29 E-value=8.2e-13 Score=152.42 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.++++|+++|++++|||||+|+|++..+........|..+..+.+. .++ ..++|||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~-------------~~~-----------~~i~~iD 57 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE-------------TEN-----------GMITFLD 57 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC-------------TTS-----------SCCCEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE-------------ECC-----------EEEEEEE
Confidence 3578999999999999999999987654332222233222111110 011 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH--
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE-- 519 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~-- 519 (921)
|||..... .....++..+|++|+|+|++++...+..+.+..+...+.|+++++||+|+..... +.+...+..
T Consensus 58 TPGhe~f~----~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~--~~v~~~l~~~~ 131 (501)
T 1zo1_I 58 TPGHAAFT----SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP--DRVKNELSQYG 131 (501)
T ss_dssp CCTTTCCT----TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC--CCTTCCCCCCC
T ss_pred CCCcHHHH----HHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH--HHHHHHHHHhh
Confidence 99975432 2344567889999999999987666666677777778899999999999974311 011110000
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.++ ...+++++||+++
T Consensus 132 ~~~~~~~-~~~~~v~vSAktG 151 (501)
T 1zo1_I 132 ILPEEWG-GESQFVHVSAKAG 151 (501)
T ss_dssp CCTTCCS-SSCEEEECCTTTC
T ss_pred hhHHHhC-CCccEEEEeeeec
Confidence 0000011 1368999999987
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=7.7e-13 Score=157.01 Aligned_cols=173 Identities=19% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC----------CCccceeEEEEccCCccchhhcccccCCCeEEeecCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV----------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~----------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 431 (921)
...++|+++|.+|+|||||+|+|++........ .+.+..+......+.......+......+...+.++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 356789999999999999999997542111000 000000000000000000001111111111111111
Q ss_pred CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-------CHHHHHHHHHhhhcCCe-EEEEEeCCCC
Q 002437 432 PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-------TESEVVFLRYTQQWKKK-VVFVLNKSDL 503 (921)
Q Consensus 432 ~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-------t~~e~~~l~~l~~~~~~-vivVlNK~D~ 503 (921)
-..+.||||||...... .+..++..+|++|+|+|++.+. ..+..+.+..+...+.| +|+|+||+|+
T Consensus 254 --~~~i~iiDTPGh~~f~~----~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFIS----GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -------CCEEESSSEEEE----ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred --CeEEEEEECCChHHHHH----HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 13589999999854322 2344567899999999998642 45555666666677775 9999999999
Q ss_pred CC-ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 504 YQ-NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 504 ~~-~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
.. +.+..+.+...+...+...++. ...+++++||+++.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 75 3444555555555444111232 24589999999983
No 190
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.28 E-value=2.4e-12 Score=152.02 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++..+. ....||+..... ......... ....++. ...+.++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v-----~~~~~~~---------~~~~~i~ 103 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGL-----ENDDELK---------ECLFHFW 103 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGG-----TTCSTTT---------TCEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccce-----eecCCCc---------eEEEEEE
Confidence 35689999999999999999999998754 333344322111 111100000 0000000 0248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC--CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK--KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~--~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||||..... .....++..+|++|+|+|+++. .....++..+.... .|+++|+||+|+..... ..++ +
T Consensus 104 Dt~G~e~~~----~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~----~ 173 (535)
T 3dpu_A 104 DFGGQEIMH----ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK----I 173 (535)
T ss_dssp CCCSCCTTT----TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHH----H
T ss_pred ECCcHHHHH----HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHH----H
Confidence 999964332 2345567789999999999864 34445677776644 89999999999975421 1111 1
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. ..+.....+++++||+++ .|+++|.+.+.+.+..
T Consensus 174 ~----~~~~~~~~~~~~vSA~~g---------------------------~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 174 N----ERFPAIENRFHRISCKNG---------------------------DGVESIAKSLKSAVLH 208 (535)
T ss_dssp H----HHCGGGTTCEEECCC--------------------------------CTTHHHHHHHHHTC
T ss_pred H----HHHHhcCCceEEEecCcc---------------------------cCHHHHHHHHHHHHhc
Confidence 2 222223467999999987 6888888888887765
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=9e-12 Score=139.28 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=80.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+|+|.+|+|||||+|+|++....+.+..+ .|..+....+.. ..++.. .
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~-----------~~~~~~---------~ 95 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI-----------EERGVK---------L 95 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC---------------CEE---------E
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEe-----------ecCCcc---------c
Confidence 4588999999999999999999987665544332 121111111110 001110 1
Q ss_pred ccEEEeCCCCChhh---hHHHHHHH-------HhcC-------------CCCEEEEEEeC-CCCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVIL---QRQQRLTE-------EFVP-------------RADLVLFVISA-DRPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~---~~~~~~~~-------~~l~-------------~aD~il~V~da-~~~~t~~e~~~l~~l~~~~ 491 (921)
.+.+|||||+++.. +.+..++. .|+. ++|+++|+++. .+++...+..+++.+. .+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~ 174 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK 174 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cC
Confidence 48999999994321 11111111 3331 34678888876 6778888888888775 56
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.|+|+|+||+|+... .++...... +...+...+.++|++||+.+
T Consensus 175 ~piIlV~NK~Dl~~~-~ev~~~k~~----i~~~~~~~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 175 VNIVPVIAKADTLTL-KERERLKKR----ILDEIEEHNIKIYHLPDAES 218 (361)
T ss_dssp SCEEEEEECCSSSCH-HHHHHHHHH----HHHHTTCC-CCSCCCC----
T ss_pred CCEEEEEECCCCCCH-HHHHHHHHH----HHHHHHHCCCCEEeCCCcCC
Confidence 899999999999843 333333233 33334444678999999887
No 192
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=99.27 E-value=3.6e-13 Score=142.22 Aligned_cols=157 Identities=15% Similarity=0.000 Sum_probs=115.6
Q ss_pred chHHHHHHHHhcCCcEEEEe-CCCCCHHHHHHHHHHHHHHhhc-Cce-----EEecC-cHHHHHhCCCCeEEcCCCCCCH
Q 002437 100 DALDLIDEAVAKFVGIVVLN-GGEASGKSVYEAACLLKSVVKD-RAL-----FLIAE-RVDIAAAVNASGVLLSDQGLPA 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR-~k~~~~~~~~~~a~~l~~~~~~-~~~-----~ivnd-~~dla~~~~a~GvHL~~~~l~~ 171 (921)
+..+......++|++++++= ++..-.. ....+..+++. +.+ ||+++ .++.|.++|||||||+..+++
T Consensus 66 ~p~~~A~~~~~~GA~~isvlt~~~~f~G----~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~- 140 (254)
T 1vc4_A 66 DPVEAALAYARGGARAVSVLTEPHRFGG----SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG- 140 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCC----CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-
T ss_pred CHHHHHHHHHHcCCCEEEEecchhhhcc----CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-
Confidence 45788888889999999983 2221000 11233333434 677 45554 678899999999999999888
Q ss_pred HHHHHhcccCCCCccccCeEEEe----cCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhcC-----CCCEE
Q 002437 172 IVARNTMKDSMSESVVLPLVGRN----VQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTNV-----KIPIF 239 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~S----~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~~-----~~Pv~ 239 (921)
...+.+++ .. + .+|.+ ||+.+|+.+| ...|+||++++|+ |...+++. ...+++.+ ++|++
T Consensus 141 ~~l~~l~~---~a-~---~lGl~~lvev~~~~E~~~a-~~~gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vI 212 (254)
T 1vc4_A 141 ELTGAYLE---EA-R---RLGLEALVEVHTERELEIA-LEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLV 212 (254)
T ss_dssp GGHHHHHH---HH-H---HHTCEEEEEECSHHHHHHH-HHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHH---HH-H---HCCCeEEEEECCHHHHHHH-HHcCCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEE
Confidence 77787653 11 1 23444 7999999999 8999999999998 33344555 45566555 78999
Q ss_pred EEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 240 IMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 240 aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|.|||+ ++|+..+.+ |++||+|..|.++.-
T Consensus 213 AegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~ 243 (254)
T 1vc4_A 213 AESGYSRKEELKALEG-LFDAVLIGTSLMRAP 243 (254)
T ss_dssp EESCCCSHHHHHTTTT-TCSEEEECHHHHTSS
T ss_pred EEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCC
Confidence 999998 999999999 999999999988763
No 193
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=99.26 E-value=1.4e-11 Score=131.09 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=115.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHH----HHHHHHHHHHhhcCce-----EEecCc-HHHHHhCCCCeEEcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSV----YEAACLLKSVVKDRAL-----FLIAER-VDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~----~~~a~~l~~~~~~~~~-----~ivnd~-~dla~~~~a~GvHL~~~~l 169 (921)
+..+......++|+..+..=. +..+ .+..+.+++.+ +.+ |+++++ ++.|.++|||||||+..++
T Consensus 73 ~p~~~A~~y~~~GA~~isvlt----d~~~f~Gs~~~l~~ir~~v--~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVT----EQRRFQGSLDDLDAVRASV--SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC----CGGGHHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS
T ss_pred CHHHHHHHHHHcCCCEEEEec----ChhhcCCCHHHHHHHHHhC--CCCEEECccccCHHHHHHHHHcCCCEEEEecccC
Confidence 455666666689999998732 2222 12233333333 344 555664 9999999999999999888
Q ss_pred CHHHHHHhcccCC-CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC--CCCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 170 PAIVARNTMKDSM-SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE--GQKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~-~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
+....+.+..... .+ . .+.++|||.+|+.+| .+.|+||+++++.. ...+++. ...+++.+ ++||+|.||
T Consensus 147 ~~~~l~~l~~~a~~lG-l---~~lvev~t~ee~~~A-~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegG 221 (272)
T 3qja_A 147 EQSVLVSMLDRTESLG-M---TALVEVHTEQEADRA-LKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESG 221 (272)
T ss_dssp CHHHHHHHHHHHHHTT-C---EEEEEESSHHHHHHH-HHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESC
T ss_pred CHHHHHHHHHHHHHCC-C---cEEEEcCCHHHHHHH-HHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECC
Confidence 8666554431000 01 1 356789999999999 79999999999872 2244555 46777766 699999999
Q ss_pred CC-ccChHHHHHcCCcEEEEeecccccchH
Q 002437 244 SP-LVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 244 i~-~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
|+ ++|+..+.++|++||+|.+|.++.-.+
T Consensus 222 I~t~edv~~l~~~GadgvlVGsal~~a~dp 251 (272)
T 3qja_A 222 VRGTADLLAYAGAGADAVLVGEGLVTSGDP 251 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred CCCHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence 98 999999999999999999998876443
No 194
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=99.26 E-value=7.8e-12 Score=130.94 Aligned_cols=161 Identities=13% Similarity=0.026 Sum_probs=116.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeEEcCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGVLLSDQ 167 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~GvHL~~~ 167 (921)
..+.+.++.+.++|++++|++. ++.+ .-.+.++++++.|. . .+.+++|+ +++.+.++|+||||+...
T Consensus 23 ~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~--~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 23 SKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT--IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC--CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCcccccc--cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEec
Confidence 3778889999999999999994 3333 12467888888874 3 67788897 688899999999988776
Q ss_pred --C--CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEE---EeCCC-CCC---CCCcc-hhhhhhc
Q 002437 168 --G--LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFL---VCCFG-EGQ---KADVI-ENSLFTN 233 (921)
Q Consensus 168 --~--l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv---~~gpv-Tk~---~~g~~-~~~~~~~ 233 (921)
. .+...++.+.+ .+ . .+|.++ ++..+...+ ...++||+ .++|. +.. ..++. .+++++.
T Consensus 101 ~~~~~~~~~~~~~~~~---~g-~---~ig~~~~p~t~~e~~~~-~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~ 172 (230)
T 1rpx_A 101 QSSTIHLHRTINQIKS---LG-A---KAGVVLNPGTPLTAIEY-VLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKI 172 (230)
T ss_dssp TTTCSCHHHHHHHHHH---TT-S---EEEEEECTTCCGGGGTT-TTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHH---cC-C---cEEEEeCCCCCHHHHHH-HHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHH
Confidence 3 32334454432 22 2 466666 566666666 57899999 56565 222 11222 3555554
Q ss_pred C-----CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 234 V-----KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~-----~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
. ++||++.|||+++|+.++.++||+||++.++..+.
T Consensus 173 ~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a 213 (230)
T 1rpx_A 173 CAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp HHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 4 79999999999999999999999999999988764
No 195
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.26 E-value=5.6e-11 Score=139.05 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=86.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCCCCc--cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGVVPT--TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~~~t--T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..++|+|+|.+|+|||||+|+|++..... .+.... ....+...+... ...+..........+.+. ...+.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~---E~~rGiTi~~~~~~~~~~---~~~i~ 85 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM---EKQRGISITTSVMQFPYH---DCLVN 85 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEET---TEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh---cccCCcceeeeEEEEEEC---CeEEE
Confidence 46899999999999999999999642111 000000 000000011000 001111111111111111 02589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+.. ..+..++..+|++|+|+|+.++.......++..+...+.|+++|+||+|+.... ..++.+.+.
T Consensus 86 liDTPG~~df~----~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~--~~~~~~~i~ 159 (529)
T 2h5e_A 86 LLDTPGHEDFS----EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD--PMELLDEVE 159 (529)
T ss_dssp EECCCCSTTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC--HHHHHHHHH
T ss_pred EEECCCChhHH----HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc--HHHHHHHHH
Confidence 99999985433 346678899999999999999888888888888888889999999999997642 233444444
Q ss_pred HH
Q 002437 519 EN 520 (921)
Q Consensus 519 ~~ 520 (921)
+.
T Consensus 160 ~~ 161 (529)
T 2h5e_A 160 NE 161 (529)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.3e-11 Score=137.38 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.||+|||||+|+|++.+....++..||..+........+ ..+.|+|||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~------------------------~~i~l~D~p 127 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG------------------------AKIQMLDLP 127 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT------------------------EEEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC------------------------cEEEEEeCC
Confidence 46899999999999999999999988778888898877654322111 148999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-Hhh-----hcCCeEEEEEeCCCCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQ-----QWKKKVVFVLNKSDLY 504 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~l~-----~~~~~vivVlNK~D~~ 504 (921)
|+.... ......+...++.||++++|+|+++|. .+.+.+. .+. -..+|.++++||+|..
T Consensus 128 Gl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 128 GIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp GGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 984221 112334556778999999999999764 3333322 222 2457889999999963
No 197
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.24 E-value=4.6e-11 Score=144.44 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCC--CCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKR--YLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...++|+|+|.+|+|||||+|+|++.. +...+ ..+ ..+...+... ...+..........+.+. ...++
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~---~~~~~D~~~~---e~~~giTi~~~~~~~~~~---~~~i~ 78 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE---GASQMDWMEQ---EQDRGITITSAATTAAWE---GHRVN 78 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------------CCSEEEEEET---TEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccC---Cceecccchh---hhhcCceEeeeeEEEEEC---CeeEE
Confidence 356899999999999999999999521 11100 000 0000000000 000011111111111111 12589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..... ..+..++..+|++|+|+|+.++.+.....++..+...+.|+++|+||+|+... +..++.+.++
T Consensus 79 liDTPG~~df~----~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~--~~~~~~~~l~ 152 (693)
T 2xex_A 79 IIDTPGHVDFT----VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA--NFEYSVSTLH 152 (693)
T ss_dssp EECCCCCSSCC----HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC--CHHHHHHHHH
T ss_pred EEECcCCcchH----HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc--chHHHHHHHH
Confidence 99999986443 23566778899999999999988888888888888889999999999999864 3444555554
Q ss_pred HHHHHhhCCCCCeEEEecccc
Q 002437 519 ENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~ 539 (921)
..+... ..+.++++|+..
T Consensus 153 ~~l~~~---~~~~~ipisa~~ 170 (693)
T 2xex_A 153 DRLQAN---AAPIQLPIGAED 170 (693)
T ss_dssp HHHCCC---EEESEEEECCGG
T ss_pred HHhCCC---ceeEEeecccCC
Confidence 433211 123466777633
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.24 E-value=2.1e-11 Score=124.30 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|.|+|..+... ..|+.. .+...... .+|.. -.+.++|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~-------------~~g~~---------~~~~i~D 60 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQ-------------VDGKT---------IKAQIWD 60 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 357999999999999999999999865432 223221 11111110 01110 1367899
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... .......++..+|++++|+|.....+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 61 t~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 136 (199)
T 2f9l_A 61 TAGQER----YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 136 (199)
T ss_dssp CSSGGG----TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCCchh----hhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence 999632 223455667889999999999876544443 34444433 4679999999999863211 11222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ......++.+||+.+ .|+.++.+.+.+.+.
T Consensus 137 ~--------~~~~~~~~d~Sal~~---------------------------~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 137 A--------EKNNLSFIETSALDS---------------------------TNVEEAFKNILTEIY 167 (199)
T ss_dssp H--------HHTTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H--------HHcCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 113467888999876 577777777766554
No 199
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=99.22 E-value=1.2e-11 Score=128.67 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=115.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCC-HHHH---HHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeE--EcCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEAS-GKSV---YEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGV--LLSDQ 167 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~-~~~~---~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~Gv--HL~~~ 167 (921)
.++.+.++.+.+.|++++|++.++.+ ...+ .+.++++++.|. . .+-+.+|| +++.+.++|+||| |..+.
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~ 95 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST 95 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc
Confidence 37778899999999999999975543 1111 567888888874 3 56677787 5889999999999 55655
Q ss_pred CCCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEe---CCC-C---CCCCCcc-hhhhhhcC---
Q 002437 168 GLPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVC---CFG-E---GQKADVI-ENSLFTNV--- 234 (921)
Q Consensus 168 ~l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~---gpv-T---k~~~g~~-~~~~~~~~--- 234 (921)
+.+....+.+.+ .+ . .+|+++ ++..+..++ ...++||+.+ +|. + +.+.++. .+.+++..
T Consensus 96 ~~~~~~~~~~~~---~g-~---~i~~~~~~~t~~e~~~~-~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~ 167 (220)
T 2fli_A 96 RHIHGALQKIKA---AG-M---KAGVVINPGTPATALEP-LLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEK 167 (220)
T ss_dssp SCHHHHHHHHHH---TT-S---EEEEEECTTSCGGGGGG-GTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHH---cC-C---cEEEEEcCCCCHHHHHH-HHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhc
Confidence 555444455432 22 2 466666 666666666 5678999954 454 1 1222222 24444433
Q ss_pred --CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 --KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 --~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++||++.++..+.
T Consensus 168 ~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 168 GLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp TCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 79999999999999999999999999999888765
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=9.4e-10 Score=121.64 Aligned_cols=217 Identities=18% Similarity=0.149 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHHH-HHHH-HHHhcCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCC
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEEV-SLLI-DAVSQIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDG 393 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~-~~l~-~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~ 393 (921)
-.+.+++.+++.+.+.+..++........- ..+. ...........++++|++|||||||+|+|.| .++...+
T Consensus 11 ~~~~~~~~~r~~l~r~i~~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 11 LRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 356777888888888888776543322221 1222 2223456778999999999999999999984 3333223
Q ss_pred CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHH
Q 002437 394 VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 394 ~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~ 454 (921)
..+++.... ... ..............+.+....|.. ...+++||||||+.... .
T Consensus 91 ~d~~~~~~~-~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~- 163 (337)
T 2qm8_A 91 VDPSSTRTG-GSI--LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE---T- 163 (337)
T ss_dssp ECGGGGSSC-CCS--SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---H-
T ss_pred EcCcccccc-cch--HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch---h-
Confidence 222221100 000 000000000000011111101100 01369999999986321 1
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC----C
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI----E 528 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~----~ 528 (921)
.....+|++++|+|+..+. +.+ .+.. ...+.++|+||+|+....+......+.+...+. ++.. +
T Consensus 164 ---~v~~~~d~vl~v~d~~~~~---~~~---~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~-l~~~~~~~~ 233 (337)
T 2qm8_A 164 ---AVADLTDFFLVLMLPGAGD---ELQ---GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALH-ILTPPSATW 233 (337)
T ss_dssp ---HHHTTSSEEEEEECSCC------------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT-TBCCSBTTB
T ss_pred ---hHHhhCCEEEEEEcCCCcc---cHH---HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHH-hccccccCC
Confidence 2237899999999986432 111 1111 123567888999986543222222222222221 1121 1
Q ss_pred CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 529 NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 529 ~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.++++++||+.+ .|+++|.+.|.+...
T Consensus 234 ~~~vl~~Sal~g---------------------------~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHG---------------------------KGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 478999999887 789999998887654
No 201
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=99.21 E-value=2.3e-11 Score=129.31 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=124.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|++.+++++++............+..+++. +.+++++ ++++.+.+.||||||++...++
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p 110 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhCh
Confidence 677888888899999999999876533444456667777777 8999998 6788888899999999987553
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC-------------------CH-HHHHcccccCCCCEEEeCCCCCC----CCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ-------------------TL-DAAFNASSSEGADFLVCCFGEGQ----KAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h-------------------~~-~e~~~A~~~~gaDyv~~gpvTk~----~~g 224 (921)
...++..+| ++ ++ .+|++|+ +. +.+..+ .+.|+|++++.++++. .++
T Consensus 111 ~~~~~~~~~~g---~~-~i--~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~g~~~g~~ 183 (253)
T 1thf_D 111 SLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSGYD 183 (253)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHTTCSEEEEEETTTTTSCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEEEccCCcEEEEECCCccccCCCHHHHHHHH-HHCCCCEEEEEeccCCCCCCCCC
Confidence 344444444 33 21 4788886 34 556777 7899999998766322 223
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++ ..++++.+++||+|.|||+ ++|+.++.++|++||++.+|.+...
T Consensus 184 ~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~ 231 (253)
T 1thf_D 184 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 231 (253)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCC
Confidence 33 4778888899999999998 5999999999999999988887764
No 202
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.21 E-value=9.8e-11 Score=141.56 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=92.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC--CCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR--YLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|+... +...+ ..+.+ +...+... ...+..........+.+. ...++|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~---~~~d~~~~---E~~~giTi~~~~~~~~~~---~~~i~l 81 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGA---ATMDFMEQ---ERERGITITAAVTTCFWK---DHRINI 81 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------------CCEEEEEET---TEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCc---eeccCchh---hhhcccccccceEEEEEC---CeEEEE
Confidence 46799999999999999999998321 10000 00000 00000000 000001111111111111 125899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|||||..+. ...+..++..+|++|+|+|+.++.+......+..+...+.|+++|+||+|+... +..++.+.+++
T Consensus 82 iDTPG~~df----~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~--~~~~~~~~l~~ 155 (691)
T 1dar_A 82 IDTPGHVDF----TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA--DLWLVIRTMQE 155 (691)
T ss_dssp ECCCSSTTC----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC--CHHHHHHHHHH
T ss_pred EECcCccch----HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC--CHHHHHHHHHH
Confidence 999998543 345677788899999999999998888888888888889999999999999854 34444444443
Q ss_pred HHHHhhCC-CCCeEEEecc
Q 002437 520 NTMKLLNI-ENVTIYPVSA 537 (921)
Q Consensus 520 ~~~~~~~~-~~~~v~~vSA 537 (921)
. ++. ..+.++|+|+
T Consensus 156 ~----l~~~~~~~~~Pi~~ 170 (691)
T 1dar_A 156 R----LGARPVVMQLPIGR 170 (691)
T ss_dssp T----TCCCEEECEEEESC
T ss_pred H----hCCCccceeccccC
Confidence 3 332 1234566665
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.20 E-value=4.7e-11 Score=140.26 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=94.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC-C-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV-V-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~-~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..+|+|+|+.++|||||..+|+-..-.. .|. . .+...-++ .+....+.+|..........+.|.. ..++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~---~D~~~~EreRGITI~s~~~~~~~~~---~~iN 103 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHAT---SDWMAMERERGISVTTSVMQFPYRD---RVVN 103 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-----------------------CTTTEEEEEETT---EEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccc---cCChHHHHHCCCcEeeceEEEEECC---EEEE
Confidence 45789999999999999999997321100 000 0 00000011 1111222344444444444444432 2489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||.-++..+ +...++-+|.+|+|+|+..+...+...+++.+.+.+.|+|+++||+|.... +...+.+.++
T Consensus 104 lIDTPGHvDF~~E----v~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a--d~~~~~~~i~ 177 (548)
T 3vqt_A 104 LLDTPGHQDFSED----TYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL--HPLDVMADIE 177 (548)
T ss_dssp EECCCCGGGCSHH----HHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC--CHHHHHHHHH
T ss_pred EEeCCCcHHHHHH----HHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc--chhHhhhhhh
Confidence 9999998665544 666778899999999999999999999999999999999999999998765 4566666666
Q ss_pred HHH
Q 002437 519 ENT 521 (921)
Q Consensus 519 ~~~ 521 (921)
+.+
T Consensus 178 ~~l 180 (548)
T 3vqt_A 178 QHL 180 (548)
T ss_dssp HHH
T ss_pred hhc
Confidence 554
No 204
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=9.6e-11 Score=129.56 Aligned_cols=102 Identities=23% Similarity=0.096 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc-cccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL-KEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l-~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+...||..++.......+.......... .|.... ..+.+||||
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~--------~~~~~~~~~i~lvDtp 74 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIV--------KPERILPTTMEFVDIA 74 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHH--------CCSEEECCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeee--------cccceeeeEEEEEECC
Confidence 68999999999999999999998754445555565443211111110000000000 000000 248999999
Q ss_pred CCChhhhHHH---HHHHHhcCCCCEEEEEEeCCC
Q 002437 444 GTNVILQRQQ---RLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 444 G~~~~~~~~~---~~~~~~l~~aD~il~V~da~~ 474 (921)
|+........ .....+++.+|++++|+|+.+
T Consensus 75 Gl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 75 GLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp SCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9864322111 123446789999999999975
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.19 E-value=2.2e-07 Score=108.94 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc----ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT----NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...+|+|+|.+|+|||||+|+|+|..... ...++| ..+...... .|......+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~---------------------~~~~~~~~i~ 94 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVP---------------------HPKKPGHILV 94 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEE---------------------CSSSTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecc---------------------cccCCCceEE
Confidence 45789999999999999999999987431 223333 222111000 0000113589
Q ss_pred EEeCCCCChhhh----HHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHHHH
Q 002437 439 IVDTPGTNVILQ----RQQRL-TEEFVPRADLVLFVISADRPLTESEVVFLR 485 (921)
Q Consensus 439 lvDTPG~~~~~~----~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~l~ 485 (921)
||||||+.+... ....+ +...+- ++ ++|+|+...++..+...+.
T Consensus 95 LiDTpGi~~~~~~~~~~~~~~fala~ll-ss--~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 95 LLDTEGLGDVEKGDNQNDSWIFALAVLL-SS--TFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp EEEECCBCCGGGCCCTTHHHHHHHHHHH-CS--EEEEEEESCSSHHHHHTTH
T ss_pred EecCCCcCcccccchhHHHHHHHHHHHh-cC--eEEEECCCCccHHHHHHHH
Confidence 999999975422 11111 112221 33 4566767778888887544
No 206
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.17 E-value=2.7e-10 Score=137.94 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC----Cccccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS----PILKEM 437 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~----~~l~~l 437 (921)
...++|+|+|..++|||||+++|+...-............+...+... ...+..........+.+.. .....+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~---E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQ---EQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhh---HHhcCceeeeceEEEEECCccccCCceeE
Confidence 456899999999999999999997532110000000000011111000 0011111111111111111 001358
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
+||||||..+ +...+..++..+|++|+|+|+.++...+...++..+...+.|+++|+||+|+... +..++.+.+
T Consensus 85 ~liDTPG~~d----f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~--~~~~~~~~l 158 (704)
T 2rdo_7 85 NIIDTPGHVD----FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA--NFLKVVNQI 158 (704)
T ss_pred EEEeCCCccc----hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc--cHHHHHHHH
Confidence 9999999853 3345667888999999999999888777777888887888999999999998754 345555555
Q ss_pred HHHH
Q 002437 518 KENT 521 (921)
Q Consensus 518 ~~~~ 521 (921)
+..+
T Consensus 159 ~~~l 162 (704)
T 2rdo_7 159 KTRL 162 (704)
T ss_pred HHHh
Confidence 5443
No 207
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.14 E-value=7.4e-11 Score=119.58 Aligned_cols=143 Identities=23% Similarity=0.270 Sum_probs=86.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|.|.+..... ...||.. .+...... .+|.. -.+.++|
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~-------------~~g~~---------~~~~i~D 84 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQ-------------VDGKT---------IKAQIWD 84 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 45899999999999999999999976543 2233322 11111110 01110 0256799
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.... ...+..++..+|.+++|+|.....+..+. .++..+.. ...|+++|+||+|+..... ..+.....
T Consensus 85 t~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 160 (191)
T 1oix_A 85 TAGLERY----RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160 (191)
T ss_dssp ECSCCSS----SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCCcch----hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 9997422 22345567889999999998765443333 24444432 4579999999999863211 11222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ......++.+||+.+
T Consensus 161 ~--------~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 161 A--------EKNGLSFIETSALDS 176 (191)
T ss_dssp H--------HHTTCEEEECCTTTC
T ss_pred H--------HHcCCEEEEEeCCCC
Confidence 1 113467888999876
No 208
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.14 E-value=5.3e-11 Score=126.64 Aligned_cols=85 Identities=22% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCEEEEEEeCCCC--CCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 462 RADLVLFVISADRP--LTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 462 ~aD~il~V~da~~~--~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
.+|++|+|+|++++ .+.... .++..+. ..+.|+++|+||+|+... ..+++ ........ ...+++.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v~~----~~~~~~~~---~~~~~~e 233 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYIRD----AHTFALSK---KNLQVVE 233 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHHHH----HHHHHHTS---SSCCEEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHHHH----HHHHHHhc---CCCeEEE
Confidence 69999999999886 565554 3444443 246899999999998632 22222 22211111 2468999
Q ss_pred ecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 535 VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 535 vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+||+++ .|++++.+.+.+.+
T Consensus 234 ~SAk~g---------------------------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 234 TSARSN---------------------------VNVDLAFSTLVQLI 253 (255)
T ss_dssp CBTTTT---------------------------BSHHHHHHHHHHHH
T ss_pred EECCCC---------------------------CCHHHHHHHHHHHh
Confidence 999987 68888887776654
No 209
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.13 E-value=3.4e-10 Score=136.35 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
....+|+++|+.|+|||||+++|++................ ..+.......+..........+.+. -..++|+|
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~---~~d~~~~e~~~giti~~~~~~~~~~---~~~~nliD 80 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTT---TTDYTPEAKLHRTTVRTGVAPLLFR---GHRVFLLD 80 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCC---SSCCSHHHHHTTSCCSCEEEEEEET---TEEEEEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcc---cccCCHHHHhcCCeEEecceEEeeC---CEEEEEEe
Confidence 45678999999999999999999964321100000000000 0000000001111111111111111 12489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.... ...+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+. . ...++.+.+.+.
T Consensus 81 TpG~~~f----~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~--~~~~~~~~l~~~ 152 (665)
T 2dy1_A 81 APGYGDF----VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G--DYYALLEDLRST 152 (665)
T ss_dssp CCCSGGG----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C--CHHHHHHHHHHH
T ss_pred CCCccch----HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-h--hHHHHHHHHHHH
Confidence 9998533 3456778889999999999999888888888888888899999999999987 3 234444444443
No 210
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=99.13 E-value=1.3e-11 Score=130.28 Aligned_cols=160 Identities=10% Similarity=0.067 Sum_probs=120.5
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe------cCcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI------AERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv------nd~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.++++++..+..........+..+| . +.++++ +++++.+.+.||||||+|...++
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p 109 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhCh
Confidence 5678888888999999999986443222222355667777 6 889999 67788888999999999987543
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC---------------CHHH-HHcccccCCCCEEEeCCCC----CCCCCcc-h
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ---------------TLDA-AFNASSSEGADFLVCCFGE----GQKADVI-E 227 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h---------------~~~e-~~~A~~~~gaDyv~~gpvT----k~~~g~~-~ 227 (921)
...+ ..+| + .+ .+|++|| +..+ +.++ .+.|++++++.+++ ...++++ .
T Consensus 110 ~~~~~~-~~~g----~-~i--~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~t~~~~~g~~~g~~~~~i 180 (241)
T 1qo2_A 110 SFLKSL-REID----V-EP--VFSLDTRGGRVAFKGWLAEEEIDPVSLLKRL-KEYGLEEIVHTEIEKDGTLQEHDFSLT 180 (241)
T ss_dssp THHHHH-HTTT----C-EE--EEEEEEETTEECCTTCSSCSCCCHHHHHHHH-HTTTCCEEEEEETTHHHHTCCCCHHHH
T ss_pred HHHHHH-HHcC----C-cE--EEEEEecCCEEEECCceecCCCCHHHHHHHH-HhCCCCEEEEEeecccccCCcCCHHHH
Confidence 3344 3342 2 22 5788884 7766 4667 78999999997762 2233444 5
Q ss_pred hhhhhcCCCCEEEEcCCC-ccChHHHHHc-----C-CcEEEEeeccccc
Q 002437 228 NSLFTNVKIPIFIMNASP-LVDVSKFLKS-----G-ASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~-----G-a~gva~~~a~~~~ 269 (921)
.++++.+++||+|.|||+ ++|+.++.+. | ++||++.+|.++.
T Consensus 181 ~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 181 KKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred HHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 788888899999999998 5999999998 9 9999998887764
No 211
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=99.12 E-value=1.4e-11 Score=130.16 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=118.4
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|++++|++.++......... ..+..+|+. +.++++| ++++.+.+.|||+||++...++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~p 111 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETP 111 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhCH
Confidence 66788888889999999999743211111122 455666666 8899998 6677888899999999987654
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC--------------CHHH-HHcccccCCCCEEEeCCCCCC----CCCcc-hh
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ--------------TLDA-AFNASSSEGADFLVCCFGEGQ----KADVI-EN 228 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h--------------~~~e-~~~A~~~~gaDyv~~gpvTk~----~~g~~-~~ 228 (921)
.....+.+| . ++ .+|.+|+ +..+ +..+ .+.|+|++++-++++. .+++. ..
T Consensus 112 ~~~~~~~~~~g----~-~~--~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~~~~~g~~~~~~~ 183 (244)
T 1vzw_A 112 EWVAKVIAEHG----D-KI--AVGLDVRGTTLRGRGWTRDGGDLYETLDRL-NKEGCARYVVTDIAKDGTLQGPNLELLK 183 (244)
T ss_dssp HHHHHHHHHHG----G-GE--EEEEEEETTEECCSSSCCCCCBHHHHHHHH-HHTTCCCEEEEEC-------CCCHHHHH
T ss_pred HHHHHHHHHcC----C-cE--EEEEEccCCEEEEcCcccCCCCHHHHHHHH-HhCCCCEEEEeccCcccccCCCCHHHHH
Confidence 334444443 2 21 5788887 6555 5777 7899999998777332 22333 47
Q ss_pred hhhhcCCCCEEEEcCCCc-cChHHHHHc---CCcEEEEeecccccch
Q 002437 229 SLFTNVKIPIFIMNASPL-VDVSKFLKS---GASGFVISLEDLSLFN 271 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~~-~~~~~~~~~---Ga~gva~~~a~~~~~~ 271 (921)
++++..++||+|.|||+. +|+.++.++ ||+||++.+|.+..-+
T Consensus 184 ~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~ 230 (244)
T 1vzw_A 184 NVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAF 230 (244)
T ss_dssp HHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCC
Confidence 788888999999999995 999999999 9999999988877543
No 212
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=99.12 E-value=1e-10 Score=125.16 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=118.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGL--- 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l--- 169 (921)
++.+.++.+.++|++.+++++++.+..........+..+++. +.+++++ ++++.+.+.||||||+++..+
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~ 110 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFRE 110 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC----
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCC
Confidence 677888888999999999999765422111124556667777 8899984 456677778999999999887
Q ss_pred -CHHHHHHhcccCC--CCccccCeEEEecC-------------------CHHH-HHcccccCCCCEEEeCCCCCC--CCC
Q 002437 170 -PAIVARNTMKDSM--SESVVLPLVGRNVQ-------------------TLDA-AFNASSSEGADFLVCCFGEGQ--KAD 224 (921)
Q Consensus 170 -~~~~~r~~~~~~~--~~~~~~~~ig~S~h-------------------~~~e-~~~A~~~~gaDyv~~gpvTk~--~~g 224 (921)
+....+......+ ++ .+ +++++++ +..+ +..+ ...|+++|++..+++. ..|
T Consensus 111 ~~~~~~~~~~~~~g~~~~-~i--~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~t~~~~~g~~~g 186 (266)
T 2w6r_A 111 IDMRELKEYLKKHGGSGQ-AV--VVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSG 186 (266)
T ss_dssp --CHHHHHHCC----CCC-EE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHTTCSEEEEEETTTTTTCSC
T ss_pred CCHHHHHHHHHHcCCCCC-EE--EEEEEEEecCCCEEEEECCCceecchhHHHHHHHH-HHcCCCEEEEEeecCCCCcCC
Confidence 5566666642111 12 21 4777874 4445 5777 7899999999665322 223
Q ss_pred --cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 --VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 --~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+. ..++++.+++||+|.|||+ ++++.++.++||+||++.+|.++..
T Consensus 187 ~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~ 236 (266)
T 2w6r_A 187 YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 236 (266)
T ss_dssp CCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCC
Confidence 33 4788888899999999998 5999999999999999999988764
No 213
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.12 E-value=5.9e-08 Score=115.66 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=77.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEc---c------------CCcc-----chh--------h
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF---S------------DLAS-----EEQ--------Q 415 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~---~------------~~~~-----~~~--------~ 415 (921)
.+.|+|+|+.|||||||+|+|.|. ..|.+.+.+|.....+.. . .... .+. .
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred CCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 456999999999999999999997 334222223332222110 0 0000 000 0
Q ss_pred c----ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCC-CCEEEEEEeCCCCC-CHHH
Q 002437 416 R----CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPR-ADLVLFVISADRPL-TESE 480 (921)
Q Consensus 416 ~----~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~-aD~il~V~da~~~~-t~~e 480 (921)
. ........+......+...++.|+|.||+... ......++..|+.+ ..++++|++++... +...
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~ 203 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEA 203 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHH
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHH
Confidence 0 00000111111111222346999999987421 23445667777654 46677777766443 3445
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 481 VVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 481 ~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
..++..+...+.++|+|+||+|+...
T Consensus 204 l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcCCceEEEecchhhcCc
Confidence 67778888888999999999999865
No 214
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=99.12 E-value=7.8e-11 Score=126.67 Aligned_cols=134 Identities=12% Similarity=0.183 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCCcEE--EEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 101 ALDLIDEAVAKFVGIV--VLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 101 ~~~~~~~~l~~g~~~v--qlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
+.+.++++++.|++.| |+|.+..+..++++.++++.++|+. |.++++- .+++|+|+ +.+
T Consensus 101 ~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~--------~~~~G~~l-~~~--------- 162 (273)
T 2qjg_A 101 IVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAM--------MYPRGKHI-QNE--------- 162 (273)
T ss_dssp ECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEE--------EEECSTTC-SCT---------
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEE--------eCCCCccc-CCC---------
Confidence 3567889999999999 9999999999999999999999998 9988883 23578888 221
Q ss_pred cccCCCCccccCeEEEecCCHHHH-HcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccC-------
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDAA-FNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVD------- 248 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e~-~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~------- 248 (921)
+ |+|+.+++ ..| .+.|+||+.++| +.++. ..++++.+++||+|+|||+..|
T Consensus 163 ------------~---~~~~~~~~a~~a-~~~Gad~i~~~~----~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~ 222 (273)
T 2qjg_A 163 ------------R---DPELVAHAARLG-AELGADIVKTSY----TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQM 222 (273)
T ss_dssp ------------T---CHHHHHHHHHHH-HHTTCSEEEECC----CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHH
T ss_pred ------------C---CHhHHHHHHHHH-HHcCCCEEEECC----CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH
Confidence 1 56777777 777 799999999996 24555 5778888899999999999877
Q ss_pred hHHHHHcCCcEEEEeecccccchH
Q 002437 249 VSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 249 ~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
+.++.++|++||++.++.+...++
T Consensus 223 ~~~~~~~Ga~gv~vg~~i~~~~~~ 246 (273)
T 2qjg_A 223 IKDAMEAGAAGVAVGRNIFQHDDV 246 (273)
T ss_dssp HHHHHHHTCSEEECCHHHHTSSSH
T ss_pred HHHHHHcCCcEEEeeHHhhCCCCH
Confidence 888889999999988887765443
No 215
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=99.11 E-value=1.2e-11 Score=130.94 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=57.1
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCC--C
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGL--P 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l--~ 170 (921)
++.+.++.+.+.|++.+++++.+.+..........+..+|+. +.+++++ ++++.+.+.||||||+|...+ |
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~dp 115 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVENP 115 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhhCh
Confidence 678889999999999999998754321111123456667777 8999999 567778889999999998644 2
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecCC--------------------HHHHHcccccCCCCEEEeCCCCCC----CCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQT--------------------LDAAFNASSSEGADFLVCCFGEGQ----KAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h~--------------------~~e~~~A~~~~gaDyv~~gpvTk~----~~g 224 (921)
...++..+| ++ ++ ++|.+|++ .+.++.+ ...|+|++++..+++. .++
T Consensus 116 ~~~~~~~~~~g---~~-~i--v~~ld~~~~~~~~~v~~~g~~~~~~~~~~~~a~~~-~~~G~~~i~~t~~~~~g~~~g~~ 188 (247)
T 3tdn_A 116 SLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSGYD 188 (247)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHHHhC---CC-cE--EEEEEeccCCCCEEEEECCCcccCCCCHHHHHHHH-HhcCCCEEEEecccCCCCcCCCC
Confidence 334555555 45 32 35777753 1234556 6789999988776322 233
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. ...+++.+++||+|.|||+ ++++.++.++|++||++.+|.+..
T Consensus 189 ~~~~~~i~~~~~iPvia~GGI~~~~d~~~~~~~Gad~v~vg~al~~~ 235 (247)
T 3tdn_A 189 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVEN 235 (247)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCcHhhccHHHHcC
Confidence 33 4677788899999999997 999999999999999999988765
No 216
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=3.3e-10 Score=128.07 Aligned_cols=162 Identities=18% Similarity=0.160 Sum_probs=100.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....|+++|.+|||||||+|+|++......+...+|..++....... + ...++++||
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~------------~-----------~~~~~l~Dt 212 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS------------E-----------EERFTLADI 212 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS------------S-----------SCEEEEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec------------C-----------cceEEEEec
Confidence 34579999999999999999999986433444555544332211100 0 024899999
Q ss_pred CCCChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 443 PGTNVILQR---QQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
||+...... ........+..+|.+|+|+|.+ .....+.. ..+++.. ...|.++|+||+|.... ..++.+
T Consensus 213 pGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l 290 (416)
T 1udx_A 213 PGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKAL 290 (416)
T ss_dssp CCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHH
Confidence 998421111 0011233467899999999997 22223332 2222221 35799999999998743 222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+.+. ....+++++||+++ .|+++|.+.+.+.+...
T Consensus 291 ----~~~l~----~~g~~vi~iSA~~g---------------------------~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 291 ----ADALA----REGLAVLPVSALTG---------------------------AGLPALKEALHALVRST 326 (416)
T ss_dssp ----HHHHH----TTTSCEEECCTTTC---------------------------TTHHHHHHHHHHHHHTS
T ss_pred ----HHHHH----hcCCeEEEEECCCc---------------------------cCHHHHHHHHHHHHHhc
Confidence 22222 12468999999886 68888888888887643
No 217
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=9e-10 Score=124.61 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=86.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+.|+++|++|+|||||+|.|+|......+... .|.....+.+... ..+ ....+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q-----------~~~---------~~~~L 90 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK-----------EGG---------VQLLL 90 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------------------------CEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe-----------cCC---------cccce
Confidence 478999999999999999999998764333211 1111111111000 001 11258
Q ss_pred EEEeCCCCChhhhH---HHH-------HHHH-----------hc--CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCe
Q 002437 438 IIVDTPGTNVILQR---QQR-------LTEE-----------FV--PRADLVLFVISAD-RPLTESEVVFLRYTQQWKKK 493 (921)
Q Consensus 438 ~lvDTPG~~~~~~~---~~~-------~~~~-----------~l--~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~ 493 (921)
+++||||++..... ... .... ++ .++|++||+++.. +.+...+..+++.+.. +.|
T Consensus 91 tv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~ 169 (418)
T 2qag_C 91 TIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN 169 (418)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE
T ss_pred eeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc
Confidence 99999998642110 011 1111 23 3355677777765 6788888888888875 789
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 494 VVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 494 vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+|+|+||+|+.. ..++......+.+.+... +.++|.+|++.+
T Consensus 170 iIlVinK~Dll~-~~ev~~~k~~i~~~~~~~----~i~~~~~sa~~~ 211 (418)
T 2qag_C 170 IIPLIAKADTLT-PEECQQFKKQIMKEIQEH----KIKIYEFPETDD 211 (418)
T ss_dssp EEEEEESTTSSC-HHHHHHHHHHHHHHHHHH----TCCCCCCC----
T ss_pred EEEEEEcccCcc-HHHHHHHHHHHHHHHHHc----CCeEEeCCCCCC
Confidence 999999999984 345555555555555443 467888898765
No 218
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=99.10 E-value=2.5e-10 Score=117.52 Aligned_cols=158 Identities=11% Similarity=-0.005 Sum_probs=118.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH-HHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACL-LKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~-l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
+...+.+++++++|+++|+++.++.+..+.++..++ +..+|-. |. ++.+++++.|.+.||++||.++.+.....+.+
T Consensus 46 ~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGT-Vlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 46 EDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGT-ILNGEQALAAKEAGATFVVSPGFNPNTVRACQ 124 (232)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEEC-CCSHHHHHHHHHHTCSEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECC-cCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 477899999999999999999988777665544333 2334444 54 66789999999999999999987765555444
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHHHH
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLK 254 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~ 254 (921)
..| -. .+-| |.|+.|+.+| .+.|+||+-+=|-. .-.|+. .+.++... ++|+++.|||+++|+.+.++
T Consensus 125 ~~g---i~----~ipG--v~TptEi~~A-~~~Gad~vK~FPa~-~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~ 193 (232)
T 4e38_A 125 EIG---ID----IVPG--VNNPSTVEAA-LEMGLTTLKFFPAE-ASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLA 193 (232)
T ss_dssp HHT---CE----EECE--ECSHHHHHHH-HHTTCCEEEECSTT-TTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHT
T ss_pred HcC---CC----EEcC--CCCHHHHHHH-HHcCCCEEEECcCc-cccCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHH
Confidence 333 11 1335 5699999999 89999999986641 112455 57777765 69999999999999999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
+|+.++++.++..+
T Consensus 194 aGa~~~vgGs~l~~ 207 (232)
T 4e38_A 194 IPQVLACGGTWMVD 207 (232)
T ss_dssp STTBCCEEECGGGC
T ss_pred CCCeEEEECchhcC
Confidence 99998766555543
No 219
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.09 E-value=1.8e-10 Score=142.12 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=99.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC---------
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--------- 431 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--------- 431 (921)
....++|+|+|++|+|||||+|+|++.........+.+..+ ..+ ...+..+..........+.+..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~--~D~---~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~ 90 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF--TDT---RKDEQERGITIKSTAISLYSEMSDEDVKEIK 90 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCcee--ecC---chhhhhcceeEeeceeEEEeccccccccccc
Confidence 34568999999999999999999986522111111111000 000 0000001111111111111110
Q ss_pred ----CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC--
Q 002437 432 ----PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ-- 505 (921)
Q Consensus 432 ----~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~-- 505 (921)
.....+.||||||..... ..+..+++.+|++|+|+|+.++.+.+....+..+...+.|+++|+||+|+..
T Consensus 91 ~~~~~~~~~i~liDTPG~~df~----~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e 166 (842)
T 1n0u_A 91 QKTDGNSFLINLIDSPGHVDFS----SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLE 166 (842)
T ss_dssp SCCCSSEEEEEEECCCCCCSSC----HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHT
T ss_pred ccccCCCceEEEEECcCchhhH----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhh
Confidence 001248999999986543 3466778899999999999999888888888877778899999999999862
Q ss_pred ---ChHH----HHHHHHHHHHHHHHhh----C-----CCCCeEEEecccch
Q 002437 506 ---NAFE----LEEAISFVKENTMKLL----N-----IENVTIYPVSARST 540 (921)
Q Consensus 506 ---~~~~----~~~v~~~~~~~~~~~~----~-----~~~~~v~~vSA~~~ 540 (921)
+.++ +..+.+.++..+..+. + ....+|.+.|++.+
T Consensus 167 ~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g 217 (842)
T 1n0u_A 167 LQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHG 217 (842)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTT
T ss_pred hccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccc
Confidence 2222 3444454444443211 1 11235788898776
No 220
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.08 E-value=9.3e-10 Score=119.46 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=86.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC---CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG---VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~---~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+|+++|..|+|||||++.+.+... +.. ..||.. +...... . .-.+.||||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig-~~~~~v~---------------~----------~v~LqIWDT 53 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSN-PSLEHFS---------------T----------LIDLAVMEL 53 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCS-CCCEEEC---------------S----------SSCEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeee-eeeEEEc---------------c----------EEEEEEEEC
Confidence 478999999999999998886532 211 222221 1111000 0 025899999
Q ss_pred CCCChhhh-HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH----HHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQ-RQQRLTEEFVPRADLVLFVISADRPLTESEVVF----LRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~-~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~----l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||...... .. .+..|++.++++|||+|.++. ....... +..+.. .+.|+++|.||+|+..++ +..+..+
T Consensus 54 AGQErf~~~~l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~-~R~~~~R 129 (331)
T 3r7w_B 54 PGQLNYFEPSY--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED-FKVDAQR 129 (331)
T ss_dssp CSCSSSCCCSH--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH-HHHHHHH
T ss_pred CCchhccchhh--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh-hhhhHHH
Confidence 99854321 11 367788999999999999877 3333333 333332 357999999999998653 2222233
Q ss_pred HHHHHHH-HhhCC----CCCeEEEecccc
Q 002437 516 FVKENTM-KLLNI----ENVTIYPVSARS 539 (921)
Q Consensus 516 ~~~~~~~-~~~~~----~~~~v~~vSA~~ 539 (921)
.+..... ++... .+.++|.+||+.
T Consensus 130 ~V~~~~~~~la~~~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 130 DIMQRTGEELLELGLDGVQVSFYLTSIFD 158 (331)
T ss_dssp HHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred HhhHHHHHHHHhhcccccCceEEEeccCC
Confidence 3333222 22221 357888899975
No 221
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=99.07 E-value=1.6e-10 Score=129.48 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=115.5
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEE---------ecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccC
Q 002437 112 FVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFL---------IAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDS 181 (921)
Q Consensus 112 g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~i---------vnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~ 181 (921)
|+.+++.|.+..+..++.++++.+.++|+. ++.+. +++..+++.+.|+|.||+.....+....+.+..
T Consensus 66 gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~-- 143 (369)
T 3bw2_A 66 GVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRR-- 143 (369)
T ss_dssp EEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH--
T ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH--
Confidence 788889999888888899999999999998 87763 355688999999999888765545556666543
Q ss_pred CCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCC------CCCC--------CC-cc-hhhhhhcCCCCEEEEcCC
Q 002437 182 MSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFG------EGQK--------AD-VI-ENSLFTNVKIPIFIMNAS 244 (921)
Q Consensus 182 ~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpv------Tk~~--------~g-~~-~~~~~~~~~~Pv~aiGGi 244 (921)
.+ . .++.+||+.+++..| ...|+|||.+ ||. +..+ .+ +. ..++++..++||++.|||
T Consensus 144 -~g-~---~v~~~v~t~~~a~~a-~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 144 -AG-T---LTLVTATTPEEARAV-EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp -TT-C---EEEEEESSHHHHHHH-HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred -CC-C---eEEEECCCHHHHHHH-HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 23 2 578899999999999 8999999999 764 1111 22 22 366777789999999999
Q ss_pred -CccChHHHHHcCCcEEEEeecccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++|+.++++.||+||++.++.+.
T Consensus 218 ~~~~~~~~~l~~GAd~V~vGs~~~~ 242 (369)
T 3bw2_A 218 MRGGQIAAVLAAGADAAQLGTAFLA 242 (369)
T ss_dssp CSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhC
Confidence 999999999999999998776654
No 222
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.05 E-value=3.9e-10 Score=125.57 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcc-cccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRC-ERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+...+|..++.......+....... ...+... .|......+.+||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~----~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGER----VPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTB----CCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhccccc----ccccCCceEEEEECC
Confidence 57999999999999999999987533344445554443322211110000000 0000000 000000248999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
|+.... +........+++.+|++++|+|+.+
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 985321 1112334556789999999999975
No 223
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.04 E-value=3e-10 Score=117.64 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=66.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
++.+|||||... .+.+ +-..++.+++|+|+....... .......+.|+++|+||+|+.... .+.+++.
T Consensus 110 d~iiidt~G~~~-~~~~------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLI-CPVD------FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSS-GGGG------CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCC-CCch------hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcchhhHHHHHH
Confidence 689999999511 1111 113578999999988654321 112222457899999999986321 1234444
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. .. + ...+++++||+++ .|++++.+.+.+.+..
T Consensus 179 ~~~~----~~-~-~~~~i~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAK----LI-N-PRAKIIEMDLKTG---------------------------KGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHH----HH-C-TTSEEEECBTTTT---------------------------BTHHHHHHHHHHHHC-
T ss_pred HHHH----Hh-C-CCCeEEEeecCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 4333 22 2 3478999999987 6899999988877654
No 224
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.03 E-value=1.4e-10 Score=139.09 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=90.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|+.++|||||..+|+-..-............ .+.+....+.+|..........+.|.. ..++||||||
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~---~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlIDTPG 76 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT---TRTDNTLLERQRGITIQTGITSFQWEN---TKVNIIDTPG 76 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSC---CSTTCSTTHHHHSSCSSCCCCCCBCSS---CBCCCEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCC---cccCCcHHHHhCCCcEEeeeEEEEECC---EEEEEEECCC
Confidence 5799999999999999999973211100000000000 012223333445544444433333332 3589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.-++..+ +...++-+|.+|+|+|+..+...+....++.+...+.|.|+++||+|....
T Consensus 77 H~DF~~E----v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 77 HMDFLAE----VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp SSSTHHH----HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred cHHHHHH----HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 8655443 667778899999999999999888889999999999999999999998754
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=8.1e-10 Score=124.37 Aligned_cols=146 Identities=18% Similarity=0.287 Sum_probs=86.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV---PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
|.++|+|++|+|||||+|+|+|..+...... +.+. ...+.+.. ....+...++++|
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~-~~~i~~v~--------------------Q~~~l~~~ltv~D 101 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ-LQSNTYDL--------------------QESNVRLKLTIVS 101 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE-EEEEEEEE--------------------EC--CEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce-EeeEEEEe--------------------ecCccccccchhh
Confidence 4599999999999999999999854321111 1110 00111100 0001112589999
Q ss_pred CCCCChhh--------------hHHHHHHHHhc---------CCC--C-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE
Q 002437 442 TPGTNVIL--------------QRQQRLTEEFV---------PRA--D-LVLFVISADRPLTESEVVFLRYTQQWKKKVV 495 (921)
Q Consensus 442 TPG~~~~~--------------~~~~~~~~~~l---------~~a--D-~il~V~da~~~~t~~e~~~l~~l~~~~~~vi 495 (921)
+||++... ........++. .++ | +++||+|+.++++..+.++++.+. .+.|+|
T Consensus 102 ~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI 180 (427)
T 2qag_B 102 TVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNII 180 (427)
T ss_dssp EECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEE
T ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEE
Confidence 99986321 11122223321 122 3 477788888899999999999998 688999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 496 FVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 496 vVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+|+||+|.+. .+++......+++.+.. .+.+||++|.
T Consensus 181 ~Vi~KtD~Lt-~~E~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 181 PIIAKADAIS-KSELTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred EEEcchhccc-hHHHHHHHHHHHHHHHH----cCCcEEecCC
Confidence 9999999985 45666666666654433 4567777774
No 226
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=99.02 E-value=8.1e-11 Score=122.39 Aligned_cols=160 Identities=10% Similarity=-0.014 Sum_probs=120.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC------CHHHHHHHHHHHHHHhhcCceEEecCc---HHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA------SGKSVYEAACLLKSVVKDRALFLIAER---VDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~------~~~~~~~~a~~l~~~~~~~~~~ivnd~---~dla~~~~a~G--vHL~~~~ 168 (921)
.+.+.++.+.++|++++|++..+. +-. ...++.+++.|..++.+++++. ++.+.+.|||| ||..+.+
T Consensus 27 ~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G--~~~v~~lr~~~~~DvhLMv~~p~~~i~~~~~aGAd~itvH~ea~~ 104 (237)
T 3cu2_A 27 QLNEEVTTLLENQINVLHFDIADGQFSSLFTVG--AIGIKYFPTHCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYH 104 (237)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC--THHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTCSEEEEETTCTT
T ss_pred cHHHHHHHHHHcCCCEEEEEEecCccccchhhh--HHHHHHHhhhCCCCeEEEEECHHHHHHHHHHcCCCEEEEecCCcc
Confidence 677889999999999999997532 110 1466777777754788999998 89999999999 9999987
Q ss_pred CCHHHHHHhcccCCC---------CccccCeEEEec--CCHHHHHcccccCCCCEEEe---CCC--CCC--CCCcc-hhh
Q 002437 169 LPAIVARNTMKDSMS---------ESVVLPLVGRNV--QTLDAAFNASSSEGADFLVC---CFG--EGQ--KADVI-ENS 229 (921)
Q Consensus 169 l~~~~~r~~~~~~~~---------~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~---gpv--Tk~--~~g~~-~~~ 229 (921)
.+....+.+.+ . + . .+|+++ +++.+..+. ...++|||.+ +|. +.+ +..++ .++
T Consensus 105 ~~~~~i~~i~~---~~~~~~~~~~g-~---~~gv~l~p~Tp~~~l~~-~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~ 176 (237)
T 3cu2_A 105 DFALTIEWLAK---QKTTYANQVYP-V---LIGACLCPETPISELEP-YLDQIDVIQLLTLDPRNGTKYPSELILDRVIQ 176 (237)
T ss_dssp SHHHHHHHHTT---CEEEETTEEEE-C---EEEEEECTTSCGGGGTT-TTTTCSEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred cHHHHHHHHHh---cccccccccCC-c---eEEEEEeCCChHHHHHH-HhhcCceeeeeeeccCcCCeecChhHHHHHHH
Confidence 76666676643 3 2 2 577777 677776666 5779999966 787 222 22233 344
Q ss_pred hhhcC-----CCCEEEEcCCCccChHHHHH--cCCcEEEEeeccccc
Q 002437 230 LFTNV-----KIPIFIMNASPLVDVSKFLK--SGASGFVISLEDLSL 269 (921)
Q Consensus 230 ~~~~~-----~~Pv~aiGGi~~~~~~~~~~--~Ga~gva~~~a~~~~ 269 (921)
+++.. ++|+.+.|||+++|+..+.+ +||+++++.+|.++.
T Consensus 177 lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 177 VEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp HHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred HHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 44443 69999999999999999999 999999999998774
No 227
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=99.01 E-value=4.1e-10 Score=119.62 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=104.1
Q ss_pred chHHHHHHHHhcCCcEEEEeC--CCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNG--GEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~--k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.....+++|++.|++.||+|. ++.+..+.++.+.++.+.|+. +.++|+|.+ ++|+|+++..
T Consensus 93 ~~~~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~--------~~G~~~~~~~-------- 156 (263)
T 1w8s_A 93 VANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESF--------PRGGKVVNET-------- 156 (263)
T ss_dssp EESSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEEC--------CCSTTCCCTT--------
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEee--------CCCCccccCC--------
Confidence 344668999999999999999 888889999999999999998 999999844 3688886421
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCC-CEEEEcCCCcc------
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKI-PIFIMNASPLV------ 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~-Pv~aiGGi~~~------ 247 (921)
|+|.... ++.| .+.|||||.+|. + .+++ .+.+++.+++ ||+|+|||+.+
T Consensus 157 -----------------s~~~i~~a~~~a-~~~GAD~vkt~~-~---~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l 214 (263)
T 1w8s_A 157 -----------------APEIVAYAARIA-LELGADAMKIKY-T---GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFL 214 (263)
T ss_dssp -----------------CHHHHHHHHHHH-HHHTCSEEEEEC-C---SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHH
T ss_pred -----------------CHHHHHHHHHHH-HHcCCCEEEEcC-C---CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHH
Confidence 2233333 3445 678999999983 1 2444 5777777787 99999999876
Q ss_pred -ChHHHHHcCCcEEEEeeccccc
Q 002437 248 -DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 -~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++..++++||+|+++.++.+..
T Consensus 215 ~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 215 KQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHHHHHHHcCCeEEEEehhhcCC
Confidence 7888889999999998888765
No 228
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=99.01 E-value=7.2e-11 Score=124.72 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=117.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|+++++++..+......... ..+..+++. +.++++| ++++.+.+.|||+||++...++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~p 110 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENP 110 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhCh
Confidence 55678888889999999999742110001112 445555666 7899998 6788888899999999987654
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC------------------C-HHHHHcccccCCCCEEEeCCCCCC----CCCc
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ------------------T-LDAAFNASSSEGADFLVCCFGEGQ----KADV 225 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h------------------~-~~e~~~A~~~~gaDyv~~gpvTk~----~~g~ 225 (921)
.....+.+| .. . .+|.+++ + .+.+..+ .+.|+|++++-++++. .+++
T Consensus 111 ~~~~~~~~~~g---~~-~---~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~~~~~g~~~ 182 (244)
T 2y88_A 111 QWCARVIGEHG---DQ-V---AVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERL-DSEGCSRFVVTDITKDGTLGGPNL 182 (244)
T ss_dssp HHHHHHHHHHG---GG-E---EEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHH-HHTTCCCEEEEETTTTTTTSCCCH
T ss_pred HHHHHHHHHcC---CC-E---EEEEeccccCCCCEEEECCccCCCCCHHHHHHHH-HhCCCCEEEEEecCCccccCCCCH
Confidence 334444443 22 1 5677776 3 5666777 7899999999887443 2333
Q ss_pred c-hhhhhhcCCCCEEEEcCCCc-cChHHHHHc---CCcEEEEeecccccc
Q 002437 226 I-ENSLFTNVKIPIFIMNASPL-VDVSKFLKS---GASGFVISLEDLSLF 270 (921)
Q Consensus 226 ~-~~~~~~~~~~Pv~aiGGi~~-~~~~~~~~~---Ga~gva~~~a~~~~~ 270 (921)
+ ..++++..++||+|.|||+. +|+.++.++ |++||++.++.+...
T Consensus 183 ~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~ 232 (244)
T 2y88_A 183 DLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARR 232 (244)
T ss_dssp HHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCC
Confidence 3 46777788999999999985 999999998 999999988887753
No 229
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=99.01 E-value=4e-10 Score=120.25 Aligned_cols=176 Identities=9% Similarity=0.051 Sum_probs=115.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC---------------------CCHHHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE---------------------ASGKSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~---------------------~~~~~~~~~a~~l~~~~~~~~~~ 145 (921)
..|+++++. +...+.+.++.+.++|+++|+++.+- .+.....+.++++++.+ +.++
T Consensus 21 ~~~i~~g~~-~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~--~~Pv 97 (262)
T 1rd5_A 21 IPYITAGDP-DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL--SCPV 97 (262)
T ss_dssp EEEEETTSS-CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC--SSCE
T ss_pred EEEeeCCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCE
Confidence 578877653 23467888888889999999998543 34455555555555432 6788
Q ss_pred EecCcHHH--------HHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCC-HHHHHcccccCCCCEEEeC
Q 002437 146 LIAERVDI--------AAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQT-LDAAFNASSSEGADFLVCC 216 (921)
Q Consensus 146 ivnd~~dl--------a~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~-~~e~~~A~~~~gaDyv~~g 216 (921)
+++++++. |.+.|+||||++ |++...++++.+.-+..+. ..++.+++++ .+.+... ...+.+|+.++
T Consensus 98 ~~m~~~~~~~~~~~~~a~~aGadgv~v~--d~~~~~~~~~~~~~~~~g~-~~i~~~a~~t~~e~~~~~-~~~~~g~v~~~ 173 (262)
T 1rd5_A 98 VLLSYYKPIMFRSLAKMKEAGVHGLIVP--DLPYVAAHSLWSEAKNNNL-ELVLLTTPAIPEDRMKEI-TKASEGFVYLV 173 (262)
T ss_dssp EEECCSHHHHSCCTHHHHHTTCCEEECT--TCBTTTHHHHHHHHHHTTC-EECEEECTTSCHHHHHHH-HHHCCSCEEEE
T ss_pred EEEecCcHHHHHHHHHHHHcCCCEEEEc--CCChhhHHHHHHHHHHcCC-ceEEEECCCCCHHHHHHH-HhcCCCeEEEe
Confidence 88765553 888999999996 4443334433210000000 0146677765 4444544 35566777766
Q ss_pred CC---CCC--CC---Ccc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 217 FG---EGQ--KA---DVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 217 pv---Tk~--~~---g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++ |.. .. ... ...+++..++||++.|||+ ++|+.++.++||+||+|.+|..+.
T Consensus 174 s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 174 SVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp CSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred cCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhH
Confidence 55 332 21 111 3667777799999999998 999999999999999988887655
No 230
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.98 E-value=2.7e-09 Score=113.61 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=71.1
Q ss_pred ccEEEeCCCCChhhhHH--HHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H----HHHhhhcCCeEEEEEeCCCCCCChH
Q 002437 436 EMIIVDTPGTNVILQRQ--QRLTEEFVPRADLVLFVISADRPLTESEVV-F----LRYTQQWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~--~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~----l~~l~~~~~~vivVlNK~D~~~~~~ 508 (921)
+++||||||........ .......+.. +++|+|+|+.......+.. . +......+.|+++|+||+|+... .
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~-~ 187 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE-E 187 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH-H
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc-c
Confidence 69999999985332110 1122345566 9999999987655544432 1 12233457899999999999754 2
Q ss_pred HHHHHHHHHH------HHH-----------------HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccc
Q 002437 509 ELEEAISFVK------ENT-----------------MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHW 565 (921)
Q Consensus 509 ~~~~v~~~~~------~~~-----------------~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 565 (921)
+.+++.+.++ ..+ ...++ ...+++++||+++
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SA~~~------------------------- 241 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTR------------------------- 241 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS-CCCCCEECCTTTC-------------------------
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc-CcccceEEEecCc-------------------------
Confidence 2333322221 011 01112 2247899999886
Q ss_pred cccchHHHHHHHHHhhc
Q 002437 566 RINTFDKLEKLLYSFLD 582 (921)
Q Consensus 566 ~~sg~~~L~~~l~~~l~ 582 (921)
.|+++|.+.+.+.+.
T Consensus 242 --~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 242 --EGFEDLETLAYEHYC 256 (262)
T ss_dssp --TTHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHhc
Confidence 689999988887664
No 231
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=98.97 E-value=7.2e-10 Score=117.39 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.+++.+.+............+..+++. +.++++++ +++.+.+.|||+||++...+.
T Consensus 34 ~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~~ 113 (253)
T 1h5y_A 34 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNP 113 (253)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCT
T ss_pred cHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhCc
Confidence 567888888899999999998765321122233445555555 78999986 566677789999999865431
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC-------------------C-HHHHHcccccCCCCEEEeCCCC----CCCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ-------------------T-LDAAFNASSSEGADFLVCCFGE----GQKAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h-------------------~-~~e~~~A~~~~gaDyv~~gpvT----k~~~g 224 (921)
...++..+| .+ .+ .++.+++ + .+.+..+ .+.|+||+++.+++ +..++
T Consensus 114 ~~~~~~~~~~g---~~-~i--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~-~~~G~d~i~~~~~~~~g~~~~~~ 186 (253)
T 1h5y_A 114 QLVALLAREFG---SQ-ST--VVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEV-EELGAGEILLTSIDRDGTGLGYD 186 (253)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHH-HHHTCSEEEEEETTTTTTCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHH-HhCCCCEEEEecccCCCCcCcCC
Confidence 222333333 22 11 3565553 3 3556677 78899999998873 22333
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. ...+++..++||++.|||+ ++|+.++.++||+||++.++.++.
T Consensus 187 ~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 187 VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 33 4677777899999999998 499999999999999998887664
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=6.6e-11 Score=132.42 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=80.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC------C-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK------D-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~------~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
...|+++|.+|+|||||+|+|++..... + ....||.....+... .+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---------------------------~~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---------------------------EE 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---------------------------SS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---------------------------CC
Confidence 3579999999999999999999863211 2 222344433332211 24
Q ss_pred cEEEeCCCCChhh---hH-HHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 437 MIIVDTPGTNVIL---QR-QQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 437 l~lvDTPG~~~~~---~~-~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
+.++||||+.... .. ..+....+ ....+.++|++++.+.........+..+...+.|+++|+||+|.... .+.
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~-~~~ 291 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR-TKL 291 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE-EEH
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc-ccH
Confidence 8999999996432 10 11222333 36789999999986432222333355566677899999999999854 455
Q ss_pred HHHHHHHHHHH
Q 002437 511 EEAISFVKENT 521 (921)
Q Consensus 511 ~~v~~~~~~~~ 521 (921)
+...+.+.+.+
T Consensus 292 ~~~~~~~~~~~ 302 (368)
T 3h2y_A 292 EKADELYKNHA 302 (368)
T ss_dssp HHHHHHHHHHB
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 233
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=98.94 E-value=1.6e-10 Score=125.97 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCcEE-EEe-----CCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCC
Q 002437 102 LDLIDEAVAKFVGIV-VLN-----GGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQG 168 (921)
Q Consensus 102 ~~~~~~~l~~g~~~v-qlR-----~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~ 168 (921)
.+.++.+.++|++.| +++ .+......+......+..+++. +.+++++++. +++.+.|||||+ +...
T Consensus 31 ~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~-~~~~ 109 (305)
T 2nv1_A 31 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID-ESEV 109 (305)
T ss_dssp HHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCSEEE-ECTT
T ss_pred HHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCCEEE-Eecc
Confidence 477888889999999 775 1111100000012234444555 7888887665 788899999998 5555
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe------CCC--C------------------CC-
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC------CFG--E------------------GQ- 221 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~------gpv--T------------------k~- 221 (921)
++....+.......-. ..+++++|+.+++.+| ...|+|||.+ ||+ | +.
T Consensus 110 l~~~~~~~~i~~~~~g----~~v~~~~~~~~e~~~a-~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~ 184 (305)
T 2nv1_A 110 LTPADEEFHLNKNEYT----VPFVCGCRDLGEATRR-IAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDE 184 (305)
T ss_dssp SCCSCSSCCCCGGGCS----SCEEEEESSHHHHHHH-HHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred CCHHHHHHHHHHhccC----CcEEEEeCCHHHHHHH-HHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchh
Confidence 4443333332100011 1578899999999999 7999999998 554 2 11
Q ss_pred --------CCCcc-hhhhhhcCCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 222 --------KADVI-ENSLFTNVKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 222 --------~~g~~-~~~~~~~~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.++. ..++.+..++||+ +.||| +++|+.++..+||+||++.++.+..
T Consensus 185 ~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~ 244 (305)
T 2nv1_A 185 LMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 244 (305)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS
T ss_pred hhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC
Confidence 12222 3566777789999 99999 8999999999999999999998864
No 234
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=98.94 E-value=2.4e-09 Score=111.37 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=108.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ec---CcHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IA---ERVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vn---d~~dla~~~~a~GvH 163 (921)
...+.++++.++|+..+++.. . +..+.++..+ +.+++ +. ++++.+...|+|+||
T Consensus 24 ~~~~~a~~~~~~Ga~~i~~~~----~----~~i~~i~~~~--~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~ 93 (223)
T 1y0e_A 24 IMSKMALAAYEGGAVGIRANT----K----EDILAIKETV--DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIA 93 (223)
T ss_dssp HHHHHHHHHHHHTCSEEEEES----H----HHHHHHHHHC--CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHCCCeeeccCC----H----HHHHHHHHhc--CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEE
Confidence 556777777799999998842 1 2344444443 44553 11 246677888999999
Q ss_pred cCCCCCC---------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----C--c
Q 002437 164 LSDQGLP---------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----D--V 225 (921)
Q Consensus 164 L~~~~l~---------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g--~ 225 (921)
++..... ...+|... |+ . .++.++|+.+++.++ ...|+||+.+++. |.... + +
T Consensus 94 l~~~~~~~p~~~~~~~i~~~~~~~----~~-~---~v~~~~~t~~e~~~~-~~~G~d~i~~~~~g~t~~~~~~~~~~~~~ 164 (223)
T 1y0e_A 94 LDATLQQRPKETLDELVSYIRTHA----PN-V---EIMADIATVEEAKNA-ARLGFDYIGTTLHGYTSYTQGQLLYQNDF 164 (223)
T ss_dssp EECSCSCCSSSCHHHHHHHHHHHC----TT-S---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSTTCCTTHHHH
T ss_pred EeeecccCcccCHHHHHHHHHHhC----CC-c---eEEecCCCHHHHHHH-HHcCCCEEEeCCCcCcCCCCCCCCCcccH
Confidence 9876532 23455554 34 3 578899999999999 8999999999876 43211 1 1
Q ss_pred c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 226 I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 226 ~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. ..++++..++||+|.||| +++|+.+++++||++|++.++.++
T Consensus 165 ~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 165 QFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp HHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 2 367777789999999999 999999999999999999888665
No 235
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=5.9e-11 Score=132.94 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=83.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC-----CCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK-----RYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~-----~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
...|+++|.+|+|||||+|+|++. ....++ ...||.....+... .++
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---------------------------~~~ 214 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---------------------------SGA 214 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---------------------------TTC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---------------------------CCe
Confidence 357999999999999999999986 333222 33455544433221 248
Q ss_pred EEEeCCCCChhh---hHH-HHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 438 IIVDTPGTNVIL---QRQ-QRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 438 ~lvDTPG~~~~~---~~~-~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
.++||||+.... ... .+....++ ...|.++|++++.+......+..+..+...+.|+++++||+|.... .+.+
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~-~~~~ 293 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR-TKLE 293 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE-EEGG
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc-ccHH
Confidence 999999995332 111 12222333 7789999999986432222333355566677899999999998754 3445
Q ss_pred HHHHHHHHHH
Q 002437 512 EAISFVKENT 521 (921)
Q Consensus 512 ~v~~~~~~~~ 521 (921)
...+.+++.+
T Consensus 294 ~~~~~~~~~~ 303 (369)
T 3ec1_A 294 KADSLYANQL 303 (369)
T ss_dssp GHHHHHHHHB
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 236
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=98.92 E-value=1.1e-09 Score=115.67 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=114.3
Q ss_pred chHHHHHHHHhcCCcEEEEeC-CC---CCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNG-GE---ASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~-k~---~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l 169 (921)
+..+......++|+..+..=. +. .+.. + ...+++.+ +.+++..| .++.|..+|||+|+|....+
T Consensus 80 dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~-~---L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 80 DPPALAKAYEEGGAACLSVLTDTPSFQGAPE-F---LTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSTTTCCCHH-H---HHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred CHHHHHHHHHHCCCCEEEEeccccccCCCHH-H---HHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 556777777789998887632 11 1222 2 22333323 67787766 36678899999999999999
Q ss_pred CHHHHHHhcccCCCCccccC-eEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLP-LVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~-~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
+....+.+... . ..+| .+=+.|||.+|+.+| ...|+|||++.+. +.-.+++. ...+++.+ ++||++.||
T Consensus 154 ~~~~l~~l~~~---a-~~lGl~~lvevh~~eEl~~A-~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesG 228 (272)
T 3tsm_A 154 DDDLAKELEDT---A-FALGMDALIEVHDEAEMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESG 228 (272)
T ss_dssp CHHHHHHHHHH---H-HHTTCEEEEEECSHHHHHHH-TTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESS
T ss_pred CHHHHHHHHHH---H-HHcCCeEEEEeCCHHHHHHH-HhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECC
Confidence 86665555320 0 1001 234578999999999 8999999999987 22233443 35566555 589999999
Q ss_pred C-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 244 S-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 244 i-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
| +++++..+.++||+||.|..|.|+.-.+
T Consensus 229 I~t~edv~~l~~~Ga~gvLVG~almr~~d~ 258 (272)
T 3tsm_A 229 IFTHEDCLRLEKSGIGTFLIGESLMRQHDV 258 (272)
T ss_dssp CCSHHHHHHHHTTTCCEEEECHHHHTSSCH
T ss_pred CCCHHHHHHHHHcCCCEEEEcHHHcCCcCH
Confidence 9 8999999999999999999999886443
No 237
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=98.91 E-value=1.1e-08 Score=107.02 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=108.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ec---CcHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IA---ERVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vn---d~~dla~~~~a~GvH 163 (921)
...+.++++.++|+..++++. . +.++.+++.+ +.+++ ++ ++++.+.+.|||+||
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~~----~----~~i~~i~~~~--~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~ 106 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRANS----V----RDIKEIQAIT--DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIA 106 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEES----H----HHHHHHHTTC--CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEE
T ss_pred hHHHHHHHHHHCCCcEeecCC----H----HHHHHHHHhC--CCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEE
Confidence 566788888899999999962 1 2344444443 34443 33 356677889999999
Q ss_pred cCCCCC--C--------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEE--EeCCC---CCCCCC--cc
Q 002437 164 LSDQGL--P--------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL--VCCFG---EGQKAD--VI 226 (921)
Q Consensus 164 L~~~~l--~--------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv--~~gpv---Tk~~~g--~~ 226 (921)
++.... | ...+|... |+ . .++.++|+.+++..| ...|+||+ .+.++ ++...+ +.
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~----~~-~---~v~~~~~t~~ea~~a-~~~Gad~i~~~v~g~~~~~~~~~~~~~~ 177 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKY----PN-Q---LLMADISTFDEGLVA-HQAGIDFVGTTLSGYTPYSRQEAGPDVA 177 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHC----TT-C---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSCCSSSCCHH
T ss_pred EcccccCCCCCccHHHHHHHHHHhC----CC-C---eEEEeCCCHHHHHHH-HHcCCCEEeeeccccCCCCcCCCCCCHH
Confidence 976532 1 33445544 34 2 588899999999999 89999999 56655 332223 33
Q ss_pred -hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 227 -ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
..++++. ++||+|.|||+ ++|+.++.++||++|++.++.++
T Consensus 178 ~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 178 LIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp HHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 4667766 89999999998 99999999999999999888766
No 238
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=98.91 E-value=5.3e-10 Score=119.03 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHH-Hhhc----CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCC
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKS-VVKD----RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSE 184 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~-~~~~----~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~ 184 (921)
..++.++.-|.-.-.-+.+...|-.+-- ..|+ ++.+|.|+|+++| +|+ +.++..+|+..+ +.
T Consensus 130 ~~~~~i~~TRKt~Pglr~~~kyAv~~GGg~nHR~~L~d~~LIkdnHi~~a-----ggi-----~~av~~ar~~~~---~~ 196 (286)
T 1x1o_A 130 GTKAQILDTRKTTPGLRALEKYAVRVGGGRNHRYGLFDGILLKENHVRAA-----GGV-----GEAVRRAKARAP---HY 196 (286)
T ss_dssp TSSCEEECCSCCCTTCHHHHHHHHHHHTCBCCCSSSSSCEEECHHHHHHH-----TSH-----HHHHHHHHHHSC---TT
T ss_pred CCCcEEEEcCCCChhhHHHHHHHHHhCCCcccccccccceEEECCHHHHh-----CCH-----HHHHHHHHHhCC---CC
Confidence 4468889998644444444444444332 1222 2678999999877 354 446788899875 44
Q ss_pred ccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEE
Q 002437 185 SVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 185 ~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~ 262 (921)
+ .||+||||++|+.+| ...|+|||.++|++.. . .+++.+.. ++|++|+|||+++|+.++.++|+++|++
T Consensus 197 -~---~IgVev~t~eea~eA-~~aGaD~I~ld~~~~~--~--~k~av~~v~~~ipi~AsGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 197 -L---KVEVEVRSLEELEEA-LEAGADLILLDNFPLE--A--LREAVRRVGGRVPLEASGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp -S---CEEEEESSHHHHHHH-HHHTCSEEEEESCCHH--H--HHHHHHHHTTSSCEEEESSCCHHHHHHHHHHTCSEEEC
T ss_pred -C---EEEEEeCCHHHHHHH-HHcCCCEEEECCCCHH--H--HHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 3 699999999999999 8999999999998211 1 12233222 6999999999999999999999999987
Q ss_pred ee
Q 002437 263 SL 264 (921)
Q Consensus 263 ~~ 264 (921)
.+
T Consensus 268 gs 269 (286)
T 1x1o_A 268 GA 269 (286)
T ss_dssp TH
T ss_pred cH
Confidence 43
No 239
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.90 E-value=2.2e-09 Score=130.44 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc----cccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL----KEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l----~~l~ 438 (921)
+..+|+|+|+..+|||||..+|+-..-............ .+.+....+.+|........+.+.|..... ..++
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~---~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGA---ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCC---ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 457899999999999999999973210000000000000 112222223444444444444444442211 1389
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||.-++..+ +...++-+|.+|+|+|+..+...+...+|+++.+.+.|.++|+||+|.... ++..+.+.++
T Consensus 89 lIDTPGHvDF~~E----v~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a--~~~~~~~ei~ 162 (709)
T 4fn5_A 89 VIDTPGHVDFTIE----VERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA--NFLRVVEQIK 162 (709)
T ss_dssp EECCCSCTTCHHH----HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC--CHHHHHHHHH
T ss_pred EEeCCCCcccHHH----HHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc--cHHHHHHHhh
Confidence 9999998655443 556677899999999999999999999999999999999999999998754 4555566555
Q ss_pred HHH
Q 002437 519 ENT 521 (921)
Q Consensus 519 ~~~ 521 (921)
..+
T Consensus 163 ~~l 165 (709)
T 4fn5_A 163 KRL 165 (709)
T ss_dssp HHH
T ss_pred hhc
Confidence 543
No 240
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=98.87 E-value=1.4e-09 Score=118.20 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHH-------HHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCC
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSV-------YEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQ 167 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~-------~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~ 167 (921)
.+.++.+.++|++.||+|++ .+.... ......+..+++. +.+++++ +.++.+.+.|||+||....
T Consensus 31 ~~~a~~~~~~Ga~~i~~~e~-v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~~~~~~aGad~v~~~~~ 109 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMALER-VPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEV 109 (297)
T ss_dssp HHHHHHHHHHTCSEEEECSS-CHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCcEEEeccc-cchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHCCCCEEeeeCC
Confidence 47788888999999999984 322111 1123456667766 7888875 5678888999999976543
Q ss_pred CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEE------eCCC----CC-----------------
Q 002437 168 GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLV------CCFG----EG----------------- 220 (921)
Q Consensus 168 ~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~------~gpv----Tk----------------- 220 (921)
.-+....+.+.... .+ . .+.+.||+++++..| .+.|+|||. +||+ ++
T Consensus 110 ~~~~~~~~~~~~~~-~~-i---~l~~~v~~~~~~~~a-~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~ 183 (297)
T 2zbt_A 110 LTPADEEHHIDKWK-FK-V---PFVCGARNLGEALRR-IAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRED 183 (297)
T ss_dssp SCCSCSSCCCCGGG-CS-S---CEEEEESSHHHHHHH-HHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred CChHHHHHHHHHhC-CC-c---eEEeecCCHHHHHHH-HHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCC
Confidence 21111122221100 12 1 345568999999999 899999994 4444 11
Q ss_pred --------CCCCcc-hhhhhhcCCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 221 --------QKADVI-ENSLFTNVKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 --------~~~g~~-~~~~~~~~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++. ..++++..++||+ +.||| +++|+.++.++||+||++.++.++.
T Consensus 184 ~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~ 244 (297)
T 2zbt_A 184 ELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS 244 (297)
T ss_dssp GHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred CchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 112222 3667777789998 99999 9999999999999999999988753
No 241
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.86 E-value=6.7e-09 Score=112.98 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=77.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE-EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT-FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.++|+++|++|+|||||+|.|+|....|....+... .++ ..... .-.+.... ......++++|
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~--------------~~~~~~q~-~~~~~~ltv~D 82 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIE--------------ASTVEIEE-RGVKLRLTVVD 82 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC--------------------------------------CEEEEC----CCEEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEe--------------eEEEEecC-CCcccCcchhh
Confidence 589999999999999999999997544432211000 000 00000 00000000 00112589999
Q ss_pred CCCCChhh---hHHHHHHH-------Hhc-------------CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhcCCeEEEE
Q 002437 442 TPGTNVIL---QRQQRLTE-------EFV-------------PRADLVLFVISADR-PLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~-------~~l-------------~~aD~il~V~da~~-~~t~~e~~~l~~l~~~~~~vivV 497 (921)
|||++... +....++. .++ .+++++||+.+... .+...+.++++.+.. ..++++|
T Consensus 83 t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV 161 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPV 161 (301)
T ss_dssp EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEE
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEE
Confidence 99983211 01111111 222 23566777777543 477777777777753 5699999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+||.|+... .++....+.+.+.+... ..++|.+||+.+
T Consensus 162 ~~K~Dl~~~-~e~~~~~~~~~~~~~~~----~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 162 IAKADTLTL-KERERLKKRILDEIEEH----NIKIYHLPDAES 199 (301)
T ss_dssp ECCGGGSCH-HHHHHHHHHHHHHHHHT----TCCCCCCC----
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHHc----CCeEEecCCccc
Confidence 999999843 33333334444433332 468999999875
No 242
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.85 E-value=2e-08 Score=107.30 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~lvDT 442 (921)
|+++++|+.|+|||||+|+|+|......|. +..-. ...... .....+.+.+. .+...++++|+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~------i~~~g-~~i~~~--------~~~~~i~~v~q~~~~~~~ltv~d~ 67 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKAS------SWNRE-EKIPKT--------VEIKAIGHVIEEGGVKMKLTVIDT 67 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------------CCCC--------CSCCEEEESCC----CCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCc------cccCC-cccCcc--------eeeeeeEEEeecCCCcCCceEEec
Confidence 789999999999999999999864322211 00000 000000 00001111111 11235899999
Q ss_pred CCCChhh------hHHH--------HHHHHh----------cCCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCeEEEE
Q 002437 443 PGTNVIL------QRQQ--------RLTEEF----------VPRADLVLFVISAD-RPLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 443 PG~~~~~------~~~~--------~~~~~~----------l~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~vivV 497 (921)
||++... .... ...... +.++++.+|++|.. +++...+.++++.+... .++++|
T Consensus 68 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~V 146 (270)
T 3sop_A 68 PGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPV 146 (270)
T ss_dssp CC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEE
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEE
Confidence 9985310 0111 111111 23578999999954 78899999999999887 999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
+||+|... .+++...+..+++.+...
T Consensus 147 i~K~D~lt-~~e~~~~k~~i~~~l~~~ 172 (270)
T 3sop_A 147 IAKADTMT-LEEKSEFKQRVRKELEVN 172 (270)
T ss_dssp ETTGGGSC-HHHHHHHHHHHHHHHHHT
T ss_pred EeccccCC-HHHHHHHHHHHHHHHHHc
Confidence 99999985 456666666666665543
No 243
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.79 E-value=1.5e-07 Score=106.00 Aligned_cols=174 Identities=23% Similarity=0.273 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....++++|++|||||||+|+|+|......+.. +...... .+ .+ ++.. .+...+++++|+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI-~~~g~~~-----------t~-----~~-~v~q--~~~~~~ltv~D~ 127 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA-KTGVVEV-----------TM-----ER-HPYK--HPNIPNVVFWDL 127 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC-CCCC---------------C-----CC-EEEE--CSSCTTEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceE-EECCeec-----------ce-----eE-Eecc--ccccCCeeehHh
Confidence 567899999999999999999999542211111 0000000 00 01 1111 112246899999
Q ss_pred CCCChhhhHHHHHHHHh-cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC--------hHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEF-VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN--------AFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~-l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~--------~~~~~~v 513 (921)
||++.......+....+ +...|.+++ ++... ...+...+...+...++|+++|+||.|..-- ....+++
T Consensus 128 ~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 128 PGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp CCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred hcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 99863322222333222 345576666 77765 5677888888888889999999999886410 1123344
Q ss_pred HHHHHHHHHH---hhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMK---LLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~---~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+++...+ ..+.....++++|+... ...|+++|.+.+.+.+.+
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l-------------------------~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNV-------------------------CHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCT-------------------------TSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcC-------------------------CccCHHHHHHHHHHhCcc
Confidence 4444443321 11223467899999542 124799999999988864
No 244
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=98.77 E-value=2e-08 Score=103.02 Aligned_cols=171 Identities=17% Similarity=0.111 Sum_probs=105.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE----ecC----cHHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL----IAE----RVDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i----vnd----~~dla~~~~ 158 (921)
+|++-.|.. ..++.++.++++.. |++++.+-.+.. -..=.+..+.+++.+. +.+++ ++| .++.|.++|
T Consensus 2 ~li~a~d~~-~~~~~~~~~~~~~~-~v~~iev~~~~~-~~~g~~~i~~l~~~~~-~~~i~~~l~~~di~~~~~~~a~~~G 77 (207)
T 3ajx_A 2 KLQVAIDLL-STEAALELAGKVAE-YVDIIELGTPLI-KAEGLSVITAVKKAHP-DKIVFADMKTMDAGELEADIAFKAG 77 (207)
T ss_dssp EEEEEECCS-CHHHHHHHHHHHGG-GCSEEEECHHHH-HHHCTHHHHHHHHHST-TSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred eEEEEeCCC-CHHHHHHHHHHhhc-cCCEEEECcHHH-HhhCHHHHHHHHHhCC-CCeEEEEEEecCccHHHHHHHHhCC
Confidence 344544532 22355666766655 899999833210 0111223445555431 33444 344 378899999
Q ss_pred CCeE--EcCCCCCCHHHHHHhcccCCCCccccCeEEEecC---CHHH-HHcccccCCCCEEEeCCC-CCCCCCc----c-
Q 002437 159 ASGV--LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQ---TLDA-AFNASSSEGADFLVCCFG-EGQKADV----I- 226 (921)
Q Consensus 159 a~Gv--HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h---~~~e-~~~A~~~~gaDyv~~gpv-Tk~~~g~----~- 226 (921)
|||| |....+.+...+++... +.+. .+|+++| |+.+ +..+ ...|+||+.+.|. +....|. .
T Consensus 78 ad~v~vh~~~~~~~~~~~~~~~~---~~g~---~~gv~~~s~~~p~~~~~~~-~~~g~d~v~~~~~~~~~~~g~~~~~~~ 150 (207)
T 3ajx_A 78 ADLVTVLGSADDSTIAGAVKAAQ---AHNK---GVVVDLIGIEDKATRAQEV-RALGAKFVEMHAGLDEQAKPGFDLNGL 150 (207)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHH---HHTC---EEEEECTTCSSHHHHHHHH-HHTTCSEEEEECCHHHHTSTTCCTHHH
T ss_pred CCEEEEeccCChHHHHHHHHHHH---HcCC---ceEEEEecCCChHHHHHHH-HHhCCCEEEEEecccccccCCCchHHH
Confidence 9999 66655444545555442 1112 3688887 6666 5555 5679999977765 2111222 2
Q ss_pred hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.. ++|+++.|||+++|+.++.++||++|++.++..+.
T Consensus 151 i~~~~~~-~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 151 LAAGEKA-RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGA 192 (207)
T ss_dssp HHHHHHH-TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HHHhhCC-CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCC
Confidence 3344333 79999999999999999999999999998887764
No 245
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=98.72 E-value=2e-08 Score=108.52 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCcEEE----EeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 103 DLIDEAVAKFVGIVV----LNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 103 ~~~~~~l~~g~~~vq----lR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
..++.+++.|+++|+ +| ++.+..+.++.+.++.+.|++ |.+++++ +.++|+|+++++.| +
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~-~d~~~~~~~~~i~~v~~~~~~~G~p~lv~--------~~~~g~~v~~~~~~-----~- 176 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWR-SDEDAQQRLNMVKEFNELCHSNGLLSIIE--------PVVRPPRCGDKFDR-----E- 176 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEEC-TTSCHHHHHHHHHHHHHHHHTTTCEEEEE--------EEECCCSSCSCCCH-----H-
T ss_pred hhHHHHHHcCCCEEEEEEEcC-CCccHHHHHHHHHHHHHHHHHcCCcEEEE--------EECCCCccccCCCh-----h-
Confidence 558899999999999 88 666678899999999999999 9999998 56778999876543 0
Q ss_pred cccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCC-CCCCCCcc-hhhhhhc----CCCC-EEEEcCCCccC-
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFG-EGQKADVI-ENSLFTN----VKIP-IFIMNASPLVD- 248 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpv-Tk~~~g~~-~~~~~~~----~~~P-v~aiGGi~~~~- 248 (921)
|...+ +..| .+.|+||+.++|. .... +.+ ..++++. +++| |+++||+++++
T Consensus 177 ------------------~~v~~aa~~a-~~lGaD~iKv~~~~~~~g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~ 236 (304)
T 1to3_A 177 ------------------QAIIDAAKEL-GDSGADLYKVEMPLYGKG-ARSDLLTASQRLNGHINMPWVILSSGVDEKLF 236 (304)
T ss_dssp ------------------HHHHHHHHHH-TTSSCSEEEECCGGGGCS-CHHHHHHHHHHHHHTCCSCEEECCTTSCTTTH
T ss_pred ------------------HHHHHHHHHH-HHcCCCEEEeCCCcCCCC-CHHHHHHHHHhccccCCCCeEEEecCCCHHHH
Confidence 22333 5666 6899999999984 2111 333 3455555 8999 99999998854
Q ss_pred ---hHHHHHcCCcEEEEeeccccc
Q 002437 249 ---VSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 249 ---~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+..+.++|+.||++.++....
T Consensus 237 ~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 237 PRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHGG
T ss_pred HHHHHHHHHcCCeEEEEehHHhCc
Confidence 889999999999888877644
No 246
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=98.66 E-value=1.2e-07 Score=103.98 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=112.2
Q ss_pred HHHHHHHh-cCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEe-----cCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVA-KFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLI-----AERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~-~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~iv-----nd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
+.+..+.. +|+.++.. ...+.+++.+.++++++.+.. ++.+++ .+..+++.+.|+|.||++..+ |....
T Consensus 41 ~la~av~~aGglG~i~~--~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~-p~~~~ 117 (326)
T 3bo9_A 41 TLAAAVSEAGGLGIIGS--GAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN-PTKYI 117 (326)
T ss_dssp HHHHHHHHTTSBEEEEC--TTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSC-CHHHH
T ss_pred HHHHHHHhCCCcEEeCC--CCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCC-cHHHH
Confidence 33444444 45677764 456788888888888887743 666666 356778888999999997764 65555
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCC----CCCCCCcc-hhhhhhcCCCCEEEEcCCC-cc
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFG----EGQKADVI-ENSLFTNVKIPIFIMNASP-LV 247 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpv----Tk~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~ 247 (921)
+.+.. .. . .+..++++.+++..| .+.|+||+++ |+. +...+.+. ..++++..++||++.|||+ ++
T Consensus 118 ~~l~~---~g-~---~v~~~v~s~~~a~~a-~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~ 189 (326)
T 3bo9_A 118 RELKE---NG-T---KVIPVVASDSLARMV-ERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGR 189 (326)
T ss_dssp HHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred HHHHH---cC-C---cEEEEcCCHHHHHHH-HHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 55532 22 1 466788999999999 8999999999 543 11112222 3667777799999999997 99
Q ss_pred ChHHHHHcCCcEEEEeecccc
Q 002437 248 DVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+.++++.||+||.+.++.+.
T Consensus 190 dv~~al~~GA~gV~vGs~~~~ 210 (326)
T 3bo9_A 190 GMAAAFALGAEAVQMGTRFVA 210 (326)
T ss_dssp HHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHhCCCEEEechHHHc
Confidence 999999999999998766554
No 247
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=98.64 E-value=7.1e-08 Score=106.35 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=112.1
Q ss_pred HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEe-----cCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLI-----AERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~iv-----nd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
+.+..+.++| +.++..+ ..+.+.+.+.++++++++.. ++.+++ ++..+++.+.|+|+|+++.. .|....
T Consensus 27 ~la~av~~aG~lG~i~~~--~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g-~p~~~i 103 (332)
T 2z6i_A 27 DLAGAVSKAGGLGIIGGG--NAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAG-NPSKYM 103 (332)
T ss_dssp HHHHHHHHHTSBEEEECT--TCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSS-CGGGTH
T ss_pred HHHHHHHhCCCcEEeCCC--CCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCC-ChHHHH
Confidence 3344444444 6888764 46778888888888888743 677777 24577888999999999875 354444
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCCCCCC----cc-hhhhhhcCCCCEEEEcCCC-cc
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEGQKAD----VI-ENSLFTNVKIPIFIMNASP-LV 247 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk~~~g----~~-~~~~~~~~~~Pv~aiGGi~-~~ 247 (921)
+.+.. .+ . .++.++++.+++..+ .+.|+||+.+ |+-+..+.| +. ..++++..++||++.|||+ ++
T Consensus 104 ~~l~~---~g-~---~v~~~v~~~~~a~~~-~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~ 175 (332)
T 2z6i_A 104 ERFHE---AG-I---IVIPVVPSVALAKRM-EKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGE 175 (332)
T ss_dssp HHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred HHHHH---cC-C---eEEEEeCCHHHHHHH-HHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 44432 22 1 466788999999999 8999999999 442222222 22 3667777899999999997 99
Q ss_pred ChHHHHHcCCcEEEEeecccc
Q 002437 248 DVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~ 268 (921)
++.++++.||+||.+.++.+.
T Consensus 176 ~~~~al~~GAdgV~vGs~~l~ 196 (332)
T 2z6i_A 176 GAAAGFMLGAEAVQVGTRFVV 196 (332)
T ss_dssp HHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEecHHHhc
Confidence 999999999999998776654
No 248
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.59 E-value=5.6e-08 Score=100.79 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=60.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
++.++||||.-... ..+-...+.++.|+|+........ .... ....|+++|+||+|+.... ...+++.
T Consensus 120 d~~~id~~g~i~~~-------~s~~~~~~~~~~v~~~~~~~~~~~-~~~~---~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 120 DLLFIENVGNLICP-------ADFDLGTHKRIVVISTTEGDDTIE-KHPG---IMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp SEEEEECCSCSSGG-------GGCCCSCSEEEEEEEGGGCTTTTT-TCHH---HHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCccCc-------chhhhccCcEEEEEecCcchhhHh-hhhh---HhhcCCEEEEeccccCchhHHHHHHHH
Confidence 68999999952111 112234577788888532211000 0011 1357899999999986321 1233333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+. .+ + ...+++++||+++ .|++++.+.+.+.+.
T Consensus 189 ~~~~----~~-~-~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 189 NDAK----RI-N-PDAEVVLLSLKTM---------------------------EGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHH----HH-C-TTSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHH----Hh-C-CCCeEEEEEecCC---------------------------CCHHHHHHHHHHHHH
Confidence 3332 22 1 2468999999987 688888888776553
No 249
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=98.58 E-value=2.9e-07 Score=95.68 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=100.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vnd---~~dla~~~~a~GvH 163 (921)
...+....+.++|+..+-.- +. +..+++++.+ +.++| |.. +++.+.+.|+|.|.
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v--~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~ 106 (232)
T 3igs_A 37 IVAAMALAAEQAGAVAVRIE----GI----DNLRMTRSLV--SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIA 106 (232)
T ss_dssp HHHHHHHHHHHTTCSEEEEE----SH----HHHHHHHTTC--CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHCCCeEEEEC----CH----HHHHHHHHhc--CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEE
Confidence 44455566668898877651 21 2334444333 34433 332 35677889999999
Q ss_pred cCCCCC--C--H-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C---CC-CCCcc-hhhhh
Q 002437 164 LSDQGL--P--A-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E---GQ-KADVI-ENSLF 231 (921)
Q Consensus 164 L~~~~l--~--~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T---k~-~~g~~-~~~~~ 231 (921)
|..... | . ...+.... .+ . .++++||+.+++.+| .+.|+|||+++.. | +. .+++. ..+++
T Consensus 107 l~~~~~~~p~~l~~~i~~~~~---~g-~---~v~~~v~t~eea~~a-~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~ 178 (232)
T 3igs_A 107 VDGTARQRPVAVEALLARIHH---HH-L---LTMADCSSVDDGLAC-QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALH 178 (232)
T ss_dssp EECCSSCCSSCHHHHHHHHHH---TT-C---EEEEECCSHHHHHHH-HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHH---CC-C---EEEEeCCCHHHHHHH-HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHH
Confidence 865432 2 1 12222211 12 2 688899999999999 8999999986543 2 22 23343 46677
Q ss_pred hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 232 TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 232 ~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+. ++||+|.||| +++|+..++++||+||.|..+.++
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 179 DA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HT-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred hc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 66 9999999999 599999999999999999888876
No 250
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=98.58 E-value=2.3e-07 Score=96.13 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=101.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceE-------------EecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALF-------------LIAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~-------------ivnd---~~dla~~~~a~GvH 163 (921)
...+....+.++|+..+-.- +. +..+++++.+ +.++ +|.. +++.+.+.|+|.|.
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v--~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~ 106 (229)
T 3q58_A 37 IVAAMAQAAASAGAVAVRIE----GI----ENLRTVRPHL--SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIA 106 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEEE----SH----HHHHHHGGGC--CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHCCCcEEEEC----CH----HHHHHHHHhc--CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEE
Confidence 34455556668898887651 22 2233444333 3343 3333 35677888999999
Q ss_pred cCCCCC--C--H-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C---CC-CCCcc-hhhhh
Q 002437 164 LSDQGL--P--A-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E---GQ-KADVI-ENSLF 231 (921)
Q Consensus 164 L~~~~l--~--~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T---k~-~~g~~-~~~~~ 231 (921)
|..... | . ...+.... .+ . .+.++||+.+++.+| .+.|+|||+++.. | +. .+++. ..+++
T Consensus 107 l~~~~~~~p~~l~~~i~~~~~---~g-~---~v~~~v~t~eea~~a-~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~ 178 (229)
T 3q58_A 107 FDASFRSRPVDIDSLLTRIRL---HG-L---LAMADCSTVNEGISC-HQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLS 178 (229)
T ss_dssp EECCSSCCSSCHHHHHHHHHH---TT-C---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHH
T ss_pred ECccccCChHHHHHHHHHHHH---CC-C---EEEEecCCHHHHHHH-HhCCCCEEEecCccCCCCCcCCCCCHHHHHHHH
Confidence 865432 1 1 12222211 12 2 688899999999999 8999999986543 3 21 23444 46677
Q ss_pred hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 232 TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 232 ~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. ++||+|.||| +++++.+++++||+||.|.++.++.
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p 216 (229)
T 3q58_A 179 HA-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRI 216 (229)
T ss_dssp TT-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCH
T ss_pred Hc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcCh
Confidence 66 9999999999 5999999999999999998888763
No 251
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=98.55 E-value=3.5e-07 Score=100.66 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=111.4
Q ss_pred HHHHHHHh-cCCcEEEEeCCCCC-HHHHHHHHHHHHHHhhc--CceEEec---------CcHHHHHhCCCCeEEcCCCCC
Q 002437 103 DLIDEAVA-KFVGIVVLNGGEAS-GKSVYEAACLLKSVVKD--RALFLIA---------ERVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 103 ~~~~~~l~-~g~~~vqlR~k~~~-~~~~~~~a~~l~~~~~~--~~~~ivn---------d~~dla~~~~a~GvHL~~~~l 169 (921)
+.+..+.. +|+.++.. ...+ .+++.+.++++++.+.. ++.+++| +.++++.+.|+|+||++...
T Consensus 30 ~la~av~~aGglG~i~~--~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~- 106 (328)
T 2gjl_A 30 EMAAAVANAGGLATLSA--LTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND- 106 (328)
T ss_dssp HHHHHHHHTTSBCEEET--TTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-
T ss_pred HHHHHHHHCCCeEEeCC--CCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC-
Confidence 34444444 45677754 3344 77788888888888753 7888998 46778889999999997653
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCCCCCC------cc-hhhhhhcCCCCEEEE
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEGQKAD------VI-ENSLFTNVKIPIFIM 241 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk~~~g------~~-~~~~~~~~~~Pv~ai 241 (921)
|....+.+.. .+ . .+..++++.+++..+ ...|+||+++ |+....|.| .. ..++++..++||++.
T Consensus 107 p~~~~~~l~~---~g-i---~vi~~v~t~~~a~~~-~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaa 178 (328)
T 2gjl_A 107 PGEHIAEFRR---HG-V---KVIHKCTAVRHALKA-ERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIAS 178 (328)
T ss_dssp CHHHHHHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEE
T ss_pred cHHHHHHHHH---cC-C---CEEeeCCCHHHHHHH-HHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEE
Confidence 5555555432 22 1 355788999999999 8999999999 433111212 22 366777789999999
Q ss_pred cCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 242 NAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 242 GGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
||| +++|+.++++.||+||.+.++.+.
T Consensus 179 GGI~~~~~v~~al~~GAdgV~vGs~~~~ 206 (328)
T 2gjl_A 179 GGFADGRGLVAALALGADAINMGTRFLA 206 (328)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence 999 689999999999999998776554
No 252
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=98.55 E-value=5.1e-08 Score=102.19 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCcEEEEeCC-----CCCHHHHHHHHHH-----HHHHhhc-CceEEec--------CcHHHHHhCCCCeEE
Q 002437 103 DLIDEAVAKFVGIVVLNGG-----EASGKSVYEAACL-----LKSVVKD-RALFLIA--------ERVDIAAAVNASGVL 163 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k-----~~~~~~~~~~a~~-----l~~~~~~-~~~~ivn--------d~~dla~~~~a~GvH 163 (921)
+-+.+|.++|++.|+|.++ ..+.....+.+++ +..+++. +.-|+.| ++++++.++||||||
T Consensus 50 ~~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvV 129 (287)
T 3iwp_A 50 ESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLV 129 (287)
T ss_dssp HHHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6677889999999999986 2344455656655 4444566 6677777 688999999999999
Q ss_pred cCC--C--CCCHHHHHHhcccCCCCccccCeEEEecCCH--------HHHHcccccCCCCEEEeCCC-CCCCCCcc-hhh
Q 002437 164 LSD--Q--GLPAIVARNTMKDSMSESVVLPLVGRNVQTL--------DAAFNASSSEGADFLVCCFG-EGQKADVI-ENS 229 (921)
Q Consensus 164 L~~--~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~--------~e~~~A~~~~gaDyv~~gpv-Tk~~~g~~-~~~ 229 (921)
||. . .++....++++. .. +.+++++|-. +.+... ...|+|.|+-|.- .....|+. +++
T Consensus 130 fG~L~~dg~iD~~~~~~Li~---~a----~~l~vTFHRAFD~~~d~~~Ale~L-i~lGvdrILTSG~~~~a~~Gl~~Lk~ 201 (287)
T 3iwp_A 130 FGALTEDGHIDKELCMSLMA---IC----RPLPVTFHRAFDMVHDPMAALETL-LTLGFERVLTSGCDSSALEGLPLIKR 201 (287)
T ss_dssp ECCBCTTSCBCHHHHHHHHH---HH----TTSCEEECGGGGGCSCHHHHHHHH-HHHTCSEEEECTTSSSTTTTHHHHHH
T ss_pred EeeeCCCCCcCHHHHHHHHH---Hc----CCCcEEEECchhccCCHHHHHHHH-HHcCCCEEECCCCCCChHHhHHHHHH
Confidence 994 3 377788888874 22 2368899965 223344 4568888887764 22245665 555
Q ss_pred hhhcC--CCCEEEEcCCCccChHHHHH-cCCcEEE
Q 002437 230 LFTNV--KIPIFIMNASPLVDVSKFLK-SGASGFV 261 (921)
Q Consensus 230 ~~~~~--~~Pv~aiGGi~~~~~~~~~~-~Ga~gva 261 (921)
+.+.. ++++.+.|||+++|+.++.+ +|++-+=
T Consensus 202 Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 202 LIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp HHHHHTTSSEEEECTTCCTTTHHHHHHHHCCSEEE
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHhhCCCEEe
Confidence 65543 59999999999999999887 9998884
No 253
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.54 E-value=2.5e-07 Score=102.84 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=64.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC----------CCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP----------LTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~----------~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..++..+++||||+|.++. .+..+ ..++..+.. .+.|+|+|+||
T Consensus 202 ~l~i~Dt~Gq----~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK 277 (362)
T 1zcb_A 202 PFKMVDVGGQ----RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNK 277 (362)
T ss_dssp EEEEEEECC-----------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEEC
T ss_pred EEEEEeccch----hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEC
Confidence 4789999997 34456677888999999999999872 22222 345555543 35799999999
Q ss_pred CCCCCC-----------------hHHHHHHHHHHHHHHHHhhC---CCCCeEEEecccch
Q 002437 501 SDLYQN-----------------AFELEEAISFVKENTMKLLN---IENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~-----------------~~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~ 540 (921)
+|+... ....+++..++...+..+.. .....++++||+.+
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence 998521 12345666666555444322 23467899999987
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.53 E-value=2.1e-07 Score=107.44 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCCC---ccc----------eeEEEEccCC-ccchhhc--ccc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVVP---TTN----------EITFLRFSDL-ASEEQQR--CER- 419 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~~---tT~----------~~~~~~~~~~-~~~~~~~--~~~- 419 (921)
.+.+|+|+|.+|+||||++|.|. |.+++..+..+ .+. .+.++..... +...... ...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 77655433221 100 0111111000 0000000 000
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EE
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VF 496 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-iv 496 (921)
...+ .+++||||||..............+ +..+|.+++|+|+..+.. .......+.+. .|+ .+
T Consensus 180 ~~~~-----------~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gv 245 (504)
T 2j37_W 180 KNEN-----------FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASV 245 (504)
T ss_dssp HHTT-----------CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCE
T ss_pred HHCC-----------CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEE
Confidence 0011 3699999999864322211111111 127899999999987643 34444444443 564 89
Q ss_pred EEeCCCCCCC
Q 002437 497 VLNKSDLYQN 506 (921)
Q Consensus 497 VlNK~D~~~~ 506 (921)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998754
No 255
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.50 E-value=8.6e-08 Score=106.96 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=53.9
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.++...++|+++|.+|+|||||+|+|++.++.......||..+........+............... ....+.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~-------~~~~i~ 89 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK-------IPAFLN 89 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEE-------ECCEEE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccc-------cccccE
Confidence 3556778999999999999999999999877444445566544433222111000000000000000 002489
Q ss_pred EEeCCCCChhhhH---HHHHHHHhcCCCCEEEEEEeCCC
Q 002437 439 IVDTPGTNVILQR---QQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 439 lvDTPG~~~~~~~---~~~~~~~~l~~aD~il~V~da~~ 474 (921)
+|||||+...... .......+++.+|++++|+|+.+
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 9999998532211 11235677899999999999864
No 256
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=98.49 E-value=1.8e-07 Score=98.78 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=104.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCC----CCCHH-----------------HHHHHHHHHHHHhhcCceEEe--c--------
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG----EASGK-----------------SVYEAACLLKSVVKDRALFLI--A-------- 148 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k----~~~~~-----------------~~~~~a~~l~~~~~~~~~~iv--n-------- 148 (921)
.+.+.++.+.++ ++++++=-| .++.. ...+.++++++.+.--+.++. |
T Consensus 20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~ 98 (248)
T 1geq_A 20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVR 98 (248)
T ss_dssp HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHH
Confidence 566666666667 888888732 34322 234455555555422233443 4
Q ss_pred CcHHHHHhCCCCeEEcCCCCCCHHHHHHh------cccCCCCccccCeEEEecCCHHHHHcccccCCCC-EEEeCCC---
Q 002437 149 ERVDIAAAVNASGVLLSDQGLPAIVARNT------MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD-FLVCCFG--- 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~~~~l~~~~~r~~------~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD-yv~~gpv--- 218 (921)
+.++.+.+.|+||||++.. +....+.+ .| .. . +++.++++..+..++ ...++| |+.+.++
T Consensus 99 ~~~~~~~~~Gad~v~~~~~--~~~~~~~~~~~~~~~g---~~-~---~~~i~~~t~~e~~~~-~~~~~d~~i~~~~~~G~ 168 (248)
T 1geq_A 99 NFLAEAKASGVDGILVVDL--PVFHAKEFTEIAREEG---IK-T---VFLAAPNTPDERLKV-IDDMTTGFVYLVSLYGT 168 (248)
T ss_dssp HHHHHHHHHTCCEEEETTC--CGGGHHHHHHHHHHHT---CE-E---EEEECTTCCHHHHHH-HHHHCSSEEEEECCC--
T ss_pred HHHHHHHHCCCCEEEECCC--ChhhHHHHHHHHHHhC---CC-e---EEEECCCCHHHHHHH-HHhcCCCeEEEEECCcc
Confidence 3567788899999999743 33222222 33 33 2 678899888777666 566688 8866554
Q ss_pred CCC--CC---Ccc-hhhhhhcCCCCEEEEcCCCc-cChHHHHHcCCcEEEEeeccccc
Q 002437 219 EGQ--KA---DVI-ENSLFTNVKIPIFIMNASPL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 219 Tk~--~~---g~~-~~~~~~~~~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|.. +. .+. .+.+++..++||++.|||+. +|+.++.++||+||++.+|..+.
T Consensus 169 ~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 169 TGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp -----CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence 222 11 122 36777777999999999998 99999999999999988887655
No 257
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=98.48 E-value=1e-06 Score=97.39 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=104.6
Q ss_pred HHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe------cCcHHHHHhCCCCeEEcCCC-CCCH------H
Q 002437 106 DEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI------AERVDIAAAVNASGVLLSDQ-GLPA------I 172 (921)
Q Consensus 106 ~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv------nd~~dla~~~~a~GvHL~~~-~l~~------~ 172 (921)
.-+.++|+.+++ ++.+.+++.+.++++++..+-++-+.+ .++.+.+.+.|+|.||+... ..+. .
T Consensus 65 avA~aGGlg~i~---~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~ 141 (366)
T 4fo4_A 65 ALAQEGGIGFIH---KNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIR 141 (366)
T ss_dssp HHHHTTCEEEEC---SSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHH
T ss_pred HHHHcCCceEee---cCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 334578888886 578888888888888776432333333 35778888899999998322 2221 1
Q ss_pred HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc----hhh---hhhcCCCC
Q 002437 173 VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI----ENS---LFTNVKIP 237 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~----~~~---~~~~~~~P 237 (921)
..|... |+. .+++.+|++.++++.| .+.|||||.+| |- |. ...|.. ..+ .++..++|
T Consensus 142 ~ik~~~----p~v---~Vi~G~v~t~e~A~~a-~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iP 213 (366)
T 4fo4_A 142 ETRAAY----PHL---EIIGGNVATAEGARAL-IEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIP 213 (366)
T ss_dssp HHHHHC----TTC---EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCC
T ss_pred HHHHhc----CCC---ceEeeeeCCHHHHHHH-HHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCe
Confidence 234433 342 2456689999999999 89999999996 43 21 122322 223 33456899
Q ss_pred EEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 238 IFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 238 v~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+|.||| ++.++.+++++||++|.+.++.+.
T Consensus 214 VIA~GGI~~~~di~kala~GAd~V~vGs~f~~ 245 (366)
T 4fo4_A 214 VIADGGIRFSGDISKAIAAGASCVMVGSMFAG 245 (366)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEChHhhc
Confidence 9999999 789999999999999988766544
No 258
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=98.46 E-value=1.1e-06 Score=97.43 Aligned_cols=150 Identities=19% Similarity=0.099 Sum_probs=105.2
Q ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEec--CcHHHHHhCCCCeEEcCCCCC-CH------HHHH
Q 002437 107 EAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIA--ERVDIAAAVNASGVLLSDQGL-PA------IVAR 175 (921)
Q Consensus 107 ~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivn--d~~dla~~~~a~GvHL~~~~l-~~------~~~r 175 (921)
.+.++|+.+++ ++.+.++..+.++++++.+.. ++.+.++ ++.+.+.+.|+|.|||..... +. ...|
T Consensus 65 vA~~GGlgii~---~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~ 141 (361)
T 3khj_A 65 MARLGGIGIIH---KNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIK 141 (361)
T ss_dssp HHHTTCEEEEC---SSSCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHH
T ss_pred HHHcCCCeEEe---cCCCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHH
Confidence 35578888887 578888888888888877643 4555554 677788889999999843322 21 1223
Q ss_pred HhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc----hhhh---hhcCCCCEEE
Q 002437 176 NTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI----ENSL---FTNVKIPIFI 240 (921)
Q Consensus 176 ~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~----~~~~---~~~~~~Pv~a 240 (921)
...+ - .++...+++.++++.+ .+.|||||.+| |- |. ...|.. ..++ ++..++||+|
T Consensus 142 ~~~~----~----~Vivg~v~t~e~A~~l-~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA 212 (361)
T 3khj_A 142 SKMN----I----DVIVGNVVTEEATKEL-IENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212 (361)
T ss_dssp HHCC----C----EEEEEEECSHHHHHHH-HHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred HhcC----C----cEEEccCCCHHHHHHH-HHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEE
Confidence 3322 1 2454578999999999 89999999996 32 11 122222 2233 4456899999
Q ss_pred EcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 241 MNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 241 iGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.||| ++.++.+++++||++|.+.++.+.
T Consensus 213 ~GGI~~~~di~kala~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 213 DGGIRYSGDIGKALAVGASSVMIGSILAG 241 (361)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEESTTTTT
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEChhhhc
Confidence 9999 799999999999999988766655
No 259
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.45 E-value=4.4e-07 Score=100.50 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=68.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC----------CHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL----------TES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~----------t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|.. .....+..+++.+|+||||+|.++.. +.. -..++..+.. .+.|+++|+||
T Consensus 194 ~l~iwDt~GQe----~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK 269 (353)
T 1cip_A 194 HFKMFDVGGQR----SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNK 269 (353)
T ss_dssp EEEEEEECCSG----GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEEC
T ss_pred eEEEEeCCCch----hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEEC
Confidence 47899999974 34456788999999999999998632 122 2345555543 35799999999
Q ss_pred CCCCCCh----------------HHHHHHHHHHHHHHHHhhC---CCCCeEEEecccch
Q 002437 501 SDLYQNA----------------FELEEAISFVKENTMKLLN---IENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~~----------------~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~ 540 (921)
+|+.... ...+++.+++...+..+.. .....++++||+.+
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 9985211 1245566666655444421 23567899999987
No 260
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=98.42 E-value=2.2e-07 Score=95.05 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCCccccCeEEE-ecCCHHHHHcccccCCCCEEEeCCC-C-----------------------------
Q 002437 171 AIVARNTMKDSMSESVVLPLVGR-NVQTLDAAFNASSSEGADFLVCCFG-E----------------------------- 219 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~-S~h~~~e~~~A~~~~gaDyv~~gpv-T----------------------------- 219 (921)
...+|+..+ ++ . ++|+ ++|+++++..| .+.||||+ ++|. +
T Consensus 52 i~~ir~~~~---~~-~---~ig~~~v~~~~~~~~a-~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~ 122 (205)
T 1wa3_A 52 IKELSFLKE---KG-A---IIGAGTVTSVEQCRKA-VESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 122 (205)
T ss_dssp HHHTHHHHH---TT-C---EEEEESCCSHHHHHHH-HHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHH
T ss_pred HHHHHHHCC---CC-c---EEEecccCCHHHHHHH-HHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHH
Confidence 344566553 24 2 6788 66999999999 89999999 9987 3
Q ss_pred ------CCCC----Ccc-hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 220 ------GQKA----DVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 220 ------k~~~----g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.++ |+. ..++++.. ++||++.|||+++|+.+++++||++|++.++.++
T Consensus 123 ~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 123 LGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp TTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC
T ss_pred cCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC
Confidence 2122 122 25566666 7999999999999999999999999998887765
No 261
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=98.30 E-value=6.2e-07 Score=76.99 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 854 AREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 854 ~~~~~~~l~~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
++.....-.+|+++||+.+|++||..++.+.++++.|+++|+..+..|+.++++++.||||++||+
T Consensus 19 v~~TSsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 19 HMFTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444555899999999999999999999999999999999999999999999999999999885
No 262
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=98.29 E-value=2.5e-07 Score=95.48 Aligned_cols=169 Identities=11% Similarity=-0.034 Sum_probs=110.8
Q ss_pred EcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCC------CCHHHHHHHHHHHHHHh-h-c-CceEEecCc---HHHHHh
Q 002437 91 EPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGE------ASGKSVYEAACLLKSVV-K-D-RALFLIAER---VDIAAA 156 (921)
Q Consensus 91 it~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~------~~~~~~~~~a~~l~~~~-~-~-~~~~ivnd~---~dla~~ 156 (921)
|+|.-++.+ ++-+.++.+.++|++++|++-.+ .+-. ...++.+++.| . . .+-++++|. ++....
T Consensus 8 i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G--~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~ 85 (227)
T 1tqx_A 8 IAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFG--PPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT 85 (227)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCC--HHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT
T ss_pred EEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcC--HHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh
Confidence 444433333 77788888989999999999732 3211 35778888888 3 3 788999983 333333
Q ss_pred CCCCeEEcCCCC-CCHHHHH---HhcccCCCCccccCeEEEec--CCHHHHHcccccC-CCCEEEeCCC----CCCCC--
Q 002437 157 VNASGVLLSDQG-LPAIVAR---NTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSE-GADFLVCCFG----EGQKA-- 223 (921)
Q Consensus 157 ~~a~GvHL~~~~-l~~~~~r---~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~-gaDyv~~gpv----Tk~~~-- 223 (921)
.+.-.||+.+.+ .+....+ .... .+ . .+|+++ +++.+..+..... .+|||.+.+| .....
T Consensus 86 Ad~itvH~ea~~~~~~~~i~~~~~i~~---~G-~---k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~ 158 (227)
T 1tqx_A 86 SNQLTFHFEALNEDTERCIQLAKEIRD---NN-L---WCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMH 158 (227)
T ss_dssp SSEEEEEGGGGTTCHHHHHHHHHHHHT---TT-C---EEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCG
T ss_pred CCEEEEeecCCccCHHHHHHHHHHHHH---cC-C---eEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccch
Confidence 333356998876 4444444 4432 22 2 467776 4543333321333 4999988887 22111
Q ss_pred -Ccc-hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 224 -DVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 224 -g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.+. .+++++.. ++|+.+.|||+++|+.++.++||+.+++.++..+
T Consensus 159 ~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 159 DMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 222 35566555 7899999999999999999999999998888765
No 263
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=8.2e-07 Score=99.36 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=63.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+.....+|+++|.+|+|||||+|+|+|... ...+...||..++.......+...............+ + ..+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v---~----~~i~ 88 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV---P----AFLT 88 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE---C----EEEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhccccccc---C----cceE
Confidence 455678999999999999999999999887 3344444555444332211110000000000000000 0 1378
Q ss_pred EEeCCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 439 IVDTPGTNVIL---QRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 439 lvDTPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
++||||+.... +.........++.+|++++|+|+..
T Consensus 89 lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 89 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999975321 1122235567789999999999864
No 264
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.22 E-value=1e-05 Score=88.50 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=57.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..|++.++++|||+|.+ +..+.. -..++..+.. .+.|+++|+||
T Consensus 162 ~l~iwDtaGQ----e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 162 PFHLIDVGGQ----RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp EEEEEECCSC----HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeccccCCCc----ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 4789999997 567788999999999999999987 222222 2245555533 35799999999
Q ss_pred CCCCCC----------------hHHHHHHHHHHHHHH
Q 002437 501 SDLYQN----------------AFELEEAISFVKENT 521 (921)
Q Consensus 501 ~D~~~~----------------~~~~~~v~~~~~~~~ 521 (921)
+|+... ....+++.+++.+.+
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhc
Confidence 998531 113566667776665
No 265
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.20 E-value=1.3e-06 Score=93.93 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=27.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
....++|+++|.+|+|||||||+|+|.+...++..|
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~ 152 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP 152 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCC
Confidence 346789999999999999999999998866555544
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.19 E-value=6.2e-06 Score=93.23 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=54.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||............. ..+..+|.+++|+|+..+. ..........+......+|+||+|....... +
T Consensus 184 DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~---~ 258 (443)
T 3dm5_A 184 DIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKGGG---A 258 (443)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSHHH---H
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccccH---H
Confidence 6999999997543322211111 1224689999999998642 2334445555555677899999998765321 1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
... .. ....||.+++.-
T Consensus 259 ls~-----~~---~~g~PI~fig~G 275 (443)
T 3dm5_A 259 LSA-----VA---ATGAPIKFIGTG 275 (443)
T ss_dssp HHH-----HH---TTCCCEEEEECS
T ss_pred HHH-----HH---HHCCCEEEEEcC
Confidence 111 11 135788888863
No 267
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=98.18 E-value=2.9e-06 Score=87.88 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=106.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCC------CCCHHHHHHHHHHHHHHhhc--CceEEecC---cHHHHHhCCCCeEEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG------EASGKSVYEAACLLKSVVKD--RALFLIAE---RVDIAAAVNASGVLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k------~~~~~~~~~~a~~l~~~~~~--~~~~ivnd---~~dla~~~~a~GvHL~~~~ 168 (921)
++-+.++.+ ++|++++|++-. +.+- -...++.+++.|.. .+-++++| +++.+.+.|||++++-.+.
T Consensus 14 ~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~--G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea 90 (231)
T 3ctl_A 14 KFKEQIEFI-DSHADYFHIDIMDGHFVPNLTL--SPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPET 90 (231)
T ss_dssp GHHHHHHHH-HTTCSCEEEEEECSSSSSCCCB--CHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHH-HcCCCEEEEEEEeCccCccchh--cHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECccc
Confidence 677888888 999999999963 2332 13467778887743 68899988 7889999999998654333
Q ss_pred ---CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC----CCCCCC---cc-hhhhhhc--
Q 002437 169 ---LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG----EGQKAD---VI-ENSLFTN-- 233 (921)
Q Consensus 169 ---l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~g---~~-~~~~~~~-- 233 (921)
-+....+.... .+ . .+|+++ +++.+.... ...++|||.+-+| ...... +. .+++++.
T Consensus 91 ~~~~~~~~i~~i~~---~G-~---k~gv~lnp~tp~~~~~~-~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~ 162 (231)
T 3ctl_A 91 INGQAFRLIDEIRR---HD-M---KVGLILNPETPVEAMKY-YIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRE 162 (231)
T ss_dssp CTTTHHHHHHHHHH---TT-C---EEEEEECTTCCGGGGTT-TGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH---cC-C---eEEEEEECCCcHHHHHH-HHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHh
Confidence 12222233221 12 2 355554 455555554 4568999987665 111111 22 2444443
Q ss_pred ---CCCCEEEEcCCCccChHHHHHcCCcEEEEe-eccccc
Q 002437 234 ---VKIPIFIMNASPLVDVSKFLKSGASGFVIS-LEDLSL 269 (921)
Q Consensus 234 ---~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~-~a~~~~ 269 (921)
.++|+.+-|||+++|+.++.++||+.+++- ++.++.
T Consensus 163 ~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 163 REGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp HHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred ccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCC
Confidence 369999999999999999999999999988 887763
No 268
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.17 E-value=9.2e-06 Score=88.57 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=69.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||.|. ++....+..|++.++++|||+|.+ +..+-. -..+++.+.. .+.|+++++||
T Consensus 168 ~l~iwDtgGQ----e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 168 IFRMVDVGGQ----RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp EEEEEEECCS----HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eeEEEEcCCc----hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence 4789999997 556677889999999999999654 222222 2345555543 35799999999
Q ss_pred CCCCCCh-----------------HHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 501 SDLYQNA-----------------FELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~~-----------------~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
+|+.... .+.++..+++.+.+...... ....++++||+.+
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 9985321 24567777777666554322 3456788899886
No 269
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=98.13 E-value=6.6e-06 Score=87.31 Aligned_cols=169 Identities=10% Similarity=0.048 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHhhc-CceEEecCc-----------HH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS--GKSVYEAACLLKSVVKD-RALFLIAER-----------VD 152 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~--~~~~~~~a~~l~~~~~~-~~~~ivnd~-----------~d 152 (921)
++.+=|.... ++-..++...++|+++|-+=-+-.+ .... ..+.+.++. +..++.|.. ..
T Consensus 14 ~~~~~t~g~p---~~~~~~~~l~~~Gad~ielg~pr~~~~g~~~----~~~~~~l~~~~~~~~pn~~~~~~~~~~~~f~~ 86 (264)
T 1xm3_A 14 RLLLGTGKYP---SFDIQKEAVAVSESDILTFAVRRMNIFEASQ----PNFLEQLDLSKYTLLPNTAGASTAEEAVRIAR 86 (264)
T ss_dssp CEEEECSCSS---CHHHHHHHHHHHTCSEEEEETTSSTTC-----------CTTCCGGGSEEEEECTTCSSHHHHHHHHH
T ss_pred CCEEEecCCC---CHHHHHHHHHHcCCeEEEEcccccccCCCCH----HHHHHHHHhcCCeEcCCccccCCHHHHHHHHH
Confidence 3555554432 2223344444679888776444222 1111 233333444 566666652 24
Q ss_pred HHHhCCCCeE-E---cCCCC--C-----CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCC
Q 002437 153 IAAAVNASGV-L---LSDQG--L-----PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEG 220 (921)
Q Consensus 153 la~~~~a~Gv-H---L~~~~--l-----~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk 220 (921)
+|.+++.+|+ . ++... + ....+|+.++ ++ .. ++-.++|+.++++++ .+.|+|||+. |++|.
T Consensus 87 ~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~---~g-~~--vi~~~~~~~~~a~~~-~~~gad~v~~~~~~~G 159 (264)
T 1xm3_A 87 LAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLE---EG-FI--VLPYTSDDVVLARKL-EELGVHAIMPGASPIG 159 (264)
T ss_dssp HHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHH---TT-CC--EEEEECSCHHHHHHH-HHHTCSCBEECSSSTT
T ss_pred HHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHC---CC-eE--EEEEcCCCHHHHHHH-HHhCCCEEEECCcccC
Confidence 5555554554 2 33222 1 1345566654 34 21 333789999999999 7999999966 55543
Q ss_pred CCCC---cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 221 QKAD---VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 ~~~g---~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+ .. .+++++..++||++.|||+ ++++.++.++||+||+|.+|.++.
T Consensus 160 t~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 160 SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 213 (264)
T ss_dssp CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 3322 22 4677778899999999995 899999999999999998887754
No 270
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=98.11 E-value=7.1e-06 Score=87.67 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=94.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCC--CCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG--EASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k--~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++.|++.|++.|.++.. +.+..+.++.+.++.+.|+. |.++|++. +.|.|+..+
T Consensus 126 ~l~~~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~---------~~G~~~~~d--------- 187 (295)
T 3glc_A 126 AVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVT---------GVGKDMVRD--------- 187 (295)
T ss_dssp EECSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEE---------CC----CCS---------
T ss_pred hhHHHHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEEC---------CCCCccCCC---------
Confidence 3445689999999999999976 44566778889999999998 99999974 248888411
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcCCCCEEEEcCCCcc------ChH
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNASPLV------DVS 250 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~~~Pv~aiGGi~~~------~~~ 250 (921)
++ +++ ..+..| .+.|||||-.++ |. .+ .+++++.+++||+++||+..+ ++.
T Consensus 188 ------~e-----~i~------~aariA-~elGAD~VKt~~-t~--e~--~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~ 244 (295)
T 3glc_A 188 ------QR-----YFS------LATRIA-AEMGAQIIKTYY-VE--KG--FERIVAGCPVPIVIAGGKKLPEREALEMCW 244 (295)
T ss_dssp ------HH-----HHH------HHHHHH-HHTTCSEEEEEC-CT--TT--HHHHHHTCSSCEEEECCSCCCHHHHHHHHH
T ss_pred ------HH-----HHH------HHHHHH-HHhCCCEEEeCC-CH--HH--HHHHHHhCCCcEEEEECCCCCHHHHHHHHH
Confidence 11 111 234455 689999999874 21 11 467787889999999999854 488
Q ss_pred HHHHcCCcEEEEeecccccc
Q 002437 251 KFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~~~ 270 (921)
.++++||+|+++.++....-
T Consensus 245 ~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 245 QAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp HHHHTTCSEEEESHHHHTSS
T ss_pred HHHHhCCeEEEeHHHHhcCc
Confidence 88899999999988887553
No 271
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.11 E-value=8.6e-06 Score=92.56 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=43.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~ 506 (921)
+++||||||............... +..+|.+++|+|+..+. ......+.+.... ....+|+||+|....
T Consensus 182 D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 182 DVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHTTSCSCEEEEEECSSSCST
T ss_pred CEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHhhcccCCeEEEEeCCCCccc
Confidence 699999999864322222222222 24789999999997653 2233334444332 338899999998644
No 272
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=98.08 E-value=4.5e-06 Score=86.88 Aligned_cols=171 Identities=10% Similarity=0.022 Sum_probs=112.8
Q ss_pred EEEcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCCC------HHHHHHHHHHHHHHh-hc--CceEEec---CcHHHH
Q 002437 89 QLEPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEAS------GKSVYEAACLLKSVV-KD--RALFLIA---ERVDIA 154 (921)
Q Consensus 89 ylit~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~~------~~~~~~~a~~l~~~~-~~--~~~~ivn---d~~dla 154 (921)
+.|+|.-++.+ .+-+.++.+.++|++++|++-.+.. -. ....+.+++.+ .. .+-++++ +.++.+
T Consensus 28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G--~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~ 105 (246)
T 3inp_A 28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG--PMVLKALRDYGITAGMDVHLMVKPVDALIESF 105 (246)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC--HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHH
T ss_pred CeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC--HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHH
Confidence 45666655443 6778888888999999999875431 11 23566777777 33 6778888 467788
Q ss_pred HhCCCCeEEcCCCCCCH--HHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCCC----CC---CC
Q 002437 155 AAVNASGVLLSDQGLPA--IVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFGE----GQ---KA 223 (921)
Q Consensus 155 ~~~~a~GvHL~~~~l~~--~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpvT----k~---~~ 223 (921)
.+.|||++++..+..+. ...+.+-. .+ . .+|++. +++.+..+. ...++|||.+.+|- .. +.
T Consensus 106 ~~aGAd~itvH~Ea~~~~~~~i~~ir~---~G-~---k~Gvalnp~Tp~e~l~~-~l~~vD~VlvMsV~PGfgGQ~fi~~ 177 (246)
T 3inp_A 106 AKAGATSIVFHPEASEHIDRSLQLIKS---FG-I---QAGLALNPATGIDCLKY-VESNIDRVLIMSVNPGFGGQKFIPA 177 (246)
T ss_dssp HHHTCSEEEECGGGCSCHHHHHHHHHT---TT-S---EEEEEECTTCCSGGGTT-TGGGCSEEEEECSCTTC--CCCCTT
T ss_pred HHcCCCEEEEccccchhHHHHHHHHHH---cC-C---eEEEEecCCCCHHHHHH-HHhcCCEEEEeeecCCCCCcccchH
Confidence 88999999998765431 22233211 12 2 355555 454444444 34579999998771 11 11
Q ss_pred Ccc-hhhhhh-----cCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 224 DVI-ENSLFT-----NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 224 g~~-~~~~~~-----~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++ .+++++ ..++|+-+.|||+++|+.++.++||+.+++.+|.++.
T Consensus 178 ~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a 229 (246)
T 3inp_A 178 MLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNS 229 (246)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCC
Confidence 222 244443 2468999999999999999999999999988776653
No 273
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=98.06 E-value=1.1e-05 Score=83.53 Aligned_cols=171 Identities=12% Similarity=0.009 Sum_probs=109.3
Q ss_pred EcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHHHHHHHHh--h-c-CceEEec---CcHHHHHhC
Q 002437 91 EPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAACLLKSVV--K-D-RALFLIA---ERVDIAAAV 157 (921)
Q Consensus 91 it~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a~~l~~~~--~-~-~~~~ivn---d~~dla~~~ 157 (921)
|+|.-++.+ .+-+.++.+.+.|++++|++-.+.. -..=....+.+++.+ . . .+.++++ ++++.+.+.
T Consensus 7 i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~a 86 (228)
T 3ovp_A 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVA 86 (228)
T ss_dssp EEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHH
T ss_pred eeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHc
Confidence 445444333 6778888888999999999764321 000023566677764 2 2 6778888 578888889
Q ss_pred CCCeEEcCCCCCC--HHHHHHhcccCCCCccccCeEEEecC--CHHHHHcccccCCCCEEEeCCC----CCC---CCCcc
Q 002437 158 NASGVLLSDQGLP--AIVARNTMKDSMSESVVLPLVGRNVQ--TLDAAFNASSSEGADFLVCCFG----EGQ---KADVI 226 (921)
Q Consensus 158 ~a~GvHL~~~~l~--~~~~r~~~~~~~~~~~~~~~ig~S~h--~~~e~~~A~~~~gaDyv~~gpv----Tk~---~~g~~ 226 (921)
|||+||+..+... ....+..-. .. . .+|++++ +..+..+. ....+|||.+-+| ... +..++
T Consensus 87 Gad~itvH~Ea~~~~~~~i~~i~~---~G-~---k~gval~p~t~~e~l~~-~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ 158 (228)
T 3ovp_A 87 GANQYTFHLEATENPGALIKDIRE---NG-M---KVGLAIKPGTSVEYLAP-WANQIDMALVMTVEPGFGGQKFMEDMMP 158 (228)
T ss_dssp TCSEEEEEGGGCSCHHHHHHHHHH---TT-C---EEEEEECTTSCGGGTGG-GGGGCSEEEEESSCTTTCSCCCCGGGHH
T ss_pred CCCEEEEccCCchhHHHHHHHHHH---cC-C---CEEEEEcCCCCHHHHHH-HhccCCeEEEeeecCCCCCcccCHHHHH
Confidence 9999999766433 122222211 11 1 3555554 44333333 3446999998776 111 11222
Q ss_pred -hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++++.. ++|+.+-|||+++|+.++.++||+++++.++.++.
T Consensus 159 ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a 203 (228)
T 3ovp_A 159 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRS 203 (228)
T ss_dssp HHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTC
T ss_pred HHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 35565554 68999999999999999999999999988776653
No 274
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=97.91 E-value=7.8e-06 Score=86.74 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=66.4
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC-----CCCEEEEcCC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV-----KIPIFIMNAS 244 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~-----~~Pv~aiGGi 244 (921)
++..+|...+ +. + .|+++|+|++|+.+| .+.|||||.+++++. .. ..++.+.. .+|+.|.|||
T Consensus 182 av~~ar~~~~---~~-~---~I~VEV~tleea~eA-~~aGaD~I~LDn~~~--e~--l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 182 AVQEVRKIIP---FT-T---KIEVEVENLEDALRA-VEAGADIVMLDNLSP--EE--VKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHTTSC---TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESCCH--HH--HHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHhCC---CC-c---eEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--HH--HHHHHHHhhccCCCceEEEECCC
Confidence 4567777763 32 2 589999999999999 899999999998621 11 22222222 6899999999
Q ss_pred CccChHHHHHcCCcEEEEeecccc
Q 002437 245 PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 245 ~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++|+.++.++|+++|++.++...
T Consensus 250 t~eni~~~a~tGVD~IsvGslt~s 273 (285)
T 1o4u_A 250 TEENVSLYDFETVDVISSSRLTLQ 273 (285)
T ss_dssp CTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred CHHHHHHHHHcCCCEEEEeHHHcC
Confidence 999999999999999987665443
No 275
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.85 E-value=2.7e-05 Score=84.46 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=63.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.+||| . +++..++..++..+|++|+|+|++++. +.... .++..+...+.|+++|+||+|+... ...++.
T Consensus 64 ~~~iwD~--q----er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~-~~v~~~ 136 (301)
T 1u0l_A 64 SGVIENV--L----HRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE-DDLRKV 136 (301)
T ss_dssp SEEEEEE--C----CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-HHHHHH
T ss_pred eEEEEEE--c----cccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc-hhHHHH
Confidence 4789998 2 333345667899999999999999876 44443 4666666678999999999999743 222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.. ..+... .+++++||+++
T Consensus 137 ~~~~-----~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 137 RELE-----EIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp HHHH-----HHHTTT-SCEEECCTTTC
T ss_pred HHHH-----HHHhhh-CcEEEEECCCC
Confidence 2221 112222 68999999987
No 276
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.85 E-value=1.2e-05 Score=85.24 Aligned_cols=31 Identities=45% Similarity=0.559 Sum_probs=23.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV 395 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~ 395 (921)
++++++|.+|+|||||+|+|.|.....++..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 7999999999999999999999876544433
No 277
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=3e-05 Score=87.63 Aligned_cols=89 Identities=24% Similarity=0.174 Sum_probs=53.3
Q ss_pred ccEEEeCCCCCh--hhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNV--ILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~--~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+++||||||... ..+......... ....|.+++|+|+... .........+.+.-.+..+|+||+|.......
T Consensus 181 DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~a~~G~-- 256 (433)
T 3kl4_A 181 DIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGTAKGGG-- 256 (433)
T ss_dssp SEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGCSCHHH--
T ss_pred CEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccccccchH--
Confidence 689999999754 332221112111 1257999999999854 22333445555555678899999998755322
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+...... . ..||.+++.
T Consensus 257 -als~~~~-----~---g~Pi~fig~ 273 (433)
T 3kl4_A 257 -ALSAVVA-----T---GATIKFIGT 273 (433)
T ss_dssp -HHHHHHH-----H---TCEEEEEEC
T ss_pred -HHHHHHH-----H---CCCEEEEEC
Confidence 2222211 1 478888886
No 278
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=6.4e-07 Score=95.43 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=62.0
Q ss_pred EecCCHHHHHc-ccccCCCCE-----------------EEeCCC----CCCC---CCcc-hhhhhhcCCCCE--EEEcCC
Q 002437 193 RNVQTLDAAFN-ASSSEGADF-----------------LVCCFG----EGQK---ADVI-ENSLFTNVKIPI--FIMNAS 244 (921)
Q Consensus 193 ~S~h~~~e~~~-A~~~~gaDy-----------------v~~gpv----Tk~~---~g~~-~~~~~~~~~~Pv--~aiGGi 244 (921)
+||||.+|+.. | .+.|+|| +.+||| ||+. .++. ..++.+..++|| ||+|||
T Consensus 173 ~s~~~~~El~~~A-~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI 251 (330)
T 2yzr_A 173 LQRMTDEEVYGVA-KFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGV 251 (330)
T ss_dssp HTTSCHHHHHHHH-HHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCC
T ss_pred hccCCHHHHHHHH-HHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCC
Confidence 48899999965 6 7899999 677887 4532 1223 467777789998 799999
Q ss_pred -CccChHHHHHcCCcEEEEeecccccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+++|+..++++|++||+|.++.++.-
T Consensus 252 ~Tpeda~~~l~~GaDgV~VGsaI~~a~ 278 (330)
T 2yzr_A 252 ATPADAALMMQLGSDGVFVGSGIFKSE 278 (330)
T ss_dssp CSHHHHHHHHHTTCSCEEESHHHHTSS
T ss_pred CCHHHHHHHHHcCcCEEeeHHHHhcCC
Confidence 69999999999999999999998653
No 279
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=97.74 E-value=2.7e-05 Score=79.78 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=104.1
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE----ecC---c-HHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL----IAE---R-VDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i----vnd---~-~dla~~~~ 158 (921)
+|.+-.|.. ...+.++.++++ ..|++++-+=-+.. -..=.+..+.+++.+. +.++. +++ . ++.|.+.|
T Consensus 2 ~li~a~D~~-~~~~~~~~~~~~-~~~~diie~G~p~~-~~~g~~~i~~ir~~~~-~~~i~~~~~~~~~~~~~~~~~~~~G 77 (211)
T 3f4w_A 2 KLQLALDEL-TLPEAMVFMDKV-VDDVDIIEVGTPFL-IREGVNAIKAIKEKYP-HKEVLADAKIMDGGHFESQLLFDAG 77 (211)
T ss_dssp EEEEEECSC-CHHHHHHHHHHH-GGGCSEEEECHHHH-HHHTTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred cEEEEeCCC-CHHHHHHHHHHh-hcCccEEEeCcHHH-HhccHHHHHHHHHhCC-CCEEEEEEEeccchHHHHHHHHhcC
Confidence 455555532 223556667666 57888876522110 0111344555655532 23443 333 2 67788899
Q ss_pred CCeEEcCCCCCC--HHHHHHhcccCCCCccccCeEEEe---cCCH-HHHHcccccCCCCEEEeCCC-C---CCCCCcc-h
Q 002437 159 ASGVLLSDQGLP--AIVARNTMKDSMSESVVLPLVGRN---VQTL-DAAFNASSSEGADFLVCCFG-E---GQKADVI-E 227 (921)
Q Consensus 159 a~GvHL~~~~l~--~~~~r~~~~~~~~~~~~~~~ig~S---~h~~-~e~~~A~~~~gaDyv~~gpv-T---k~~~g~~-~ 227 (921)
+|+|++...... .....+.... .+ . -+++. +.+. +.+..+ .+.|+||+.+.|. + ..+.++. .
T Consensus 78 ad~v~v~~~~~~~~~~~~~~~~~~--~g-~---~~~v~~~~~~t~~~~~~~~-~~~g~d~i~v~~g~~g~~~~~~~~~~i 150 (211)
T 3f4w_A 78 ADYVTVLGVTDVLTIQSCIRAAKE--AG-K---QVVVDMICVDDLPARVRLL-EEAGADMLAVHTGTDQQAAGRKPIDDL 150 (211)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHH--HT-C---EEEEECTTCSSHHHHHHHH-HHHTCCEEEEECCHHHHHTTCCSHHHH
T ss_pred CCEEEEeCCCChhHHHHHHHHHHH--cC-C---eEEEEecCCCCHHHHHHHH-HHcCCCEEEEcCCCcccccCCCCHHHH
Confidence 999999765421 1112111100 01 1 23332 3454 557787 7899999999876 1 2222444 4
Q ss_pred hhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.. ++|+++.|||+++|+.++.++||+||++.++.++.
T Consensus 151 ~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~ 193 (211)
T 3f4w_A 151 ITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHA 193 (211)
T ss_dssp HHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTC
T ss_pred HHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 6777765 89999999999999999999999999988877664
No 280
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=97.73 E-value=4e-05 Score=81.93 Aligned_cols=127 Identities=12% Similarity=0.037 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCceEEec------CcHHHHHhCCCCeEEcCCCCCC---HHHHHHhcccCCCCccccCeEEEecCCHHHHH
Q 002437 132 ACLLKSVVKDRALFLIA------ERVDIAAAVNASGVLLSDQGLP---AIVARNTMKDSMSESVVLPLVGRNVQTLDAAF 202 (921)
Q Consensus 132 a~~l~~~~~~~~~~ivn------d~~dla~~~~a~GvHL~~~~l~---~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~ 202 (921)
.+++++.| ..+++.- +.++++.+.|||.|..+....+ ...++... +. . .+-+.||+.+|+.
T Consensus 70 i~~i~~~v--~iPvl~k~~i~~ide~qil~aaGAD~Id~s~~~~~~~li~~i~~~~----~g-~---~vvv~v~~~~Ea~ 139 (297)
T 4adt_A 70 IEEIRKCI--SINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHK----FK-T---PFVCGCTNLGEAL 139 (297)
T ss_dssp HHHHHTTC--CSEEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGG----CS-S---CEEEEESSHHHHH
T ss_pred HHHHHHhc--CCCEEEeccCCcHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHhcC----CC-C---eEEEEeCCHHHHH
Confidence 34444444 5677753 3466777899999943221111 11122210 11 1 2334689999999
Q ss_pred cccccCCCCEEEeCCC--CCC---------------------------------CCCcc-hhhhhhcCCCCEE--EEcCC
Q 002437 203 NASSSEGADFLVCCFG--EGQ---------------------------------KADVI-ENSLFTNVKIPIF--IMNAS 244 (921)
Q Consensus 203 ~A~~~~gaDyv~~gpv--Tk~---------------------------------~~g~~-~~~~~~~~~~Pv~--aiGGi 244 (921)
+| ...|+|+|+..-. |.. .+++. ...+++..++||+ |.|||
T Consensus 140 ~a-~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI 218 (297)
T 4adt_A 140 RR-ISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGI 218 (297)
T ss_dssp HH-HHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCC
T ss_pred HH-HhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCC
Confidence 99 7999999998732 321 11222 3667777889986 99999
Q ss_pred -CccChHHHHHcCCcEEEEeeccccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++++..++++||+||++.++.++.
T Consensus 219 ~t~~dv~~~~~~GAdgVlVGsai~~a 244 (297)
T 4adt_A 219 ATPADAAMCMQLGMDGVFVGSGIFES 244 (297)
T ss_dssp CSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred CCHHHHHHHHHcCCCEEEEhHHHHcC
Confidence 9999999999999999999888864
No 281
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=97.70 E-value=0.00024 Score=71.91 Aligned_cols=156 Identities=12% Similarity=-0.024 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCcEEEEeC-CCCCHHH-HHHHHHHHHHHhhc---CceEEecCc----HHHHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLNG-GEASGKS-VYEAACLLKSVVKD---RALFLIAER----VDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~-k~~~~~~-~~~~a~~l~~~~~~---~~~~ivnd~----~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
+-+..+.+.|++++=+=- +.. .+. -.+.|++|...+.. .+-+++|.. .+++..++.|.|||-.+. +...
T Consensus 13 eda~~a~~~GaD~iGfif~~~S-pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e-~~~~ 90 (205)
T 1nsj_A 13 EDALFSVESGADAVGFVFYPKS-KRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGEE-PIEL 90 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTC-TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSCC-CHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCC-CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCCC-CHHH
Confidence 557778889988766552 222 221 13456666665543 466889988 456777899999995443 5555
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--h--hhhhh--cCCCCEEEEcCCCcc
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--E--NSLFT--NVKIPIFIMNASPLV 247 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~--~~~~~--~~~~Pv~aiGGi~~~ 247 (921)
.+.+-. .- .+ |-..++++..++..+ ....+||++|-..++..-|.+ . ..+.. ..+.||+.-||++++
T Consensus 91 ~~~l~~---~~-~v--ika~~v~~~~~l~~~-~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~~~~~p~~LAGGL~pe 163 (205)
T 1nsj_A 91 CRKIAE---RI-LV--IKAVGVSNERDMERA-LNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNPE 163 (205)
T ss_dssp HHHHHT---TS-EE--EEEEEESSHHHHHHH-GGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGSSCEEEESSCCTT
T ss_pred HHHHhc---CC-CE--EEEEEcCCHHHHHHH-HHcCCCEEEECCCCCCCCCCCCccCHHHHHhhhcCCCcEEEECCCCHH
Confidence 555420 01 22 457778887777655 344499999864322111222 1 11222 237899999999999
Q ss_pred ChHHHHH-cCCcEEEEeeccc
Q 002437 248 DVSKFLK-SGASGFVISLEDL 267 (921)
Q Consensus 248 ~~~~~~~-~Ga~gva~~~a~~ 267 (921)
|+.++.+ .+..||-+++..-
T Consensus 164 NV~~ai~~~~p~gVDvsSGvE 184 (205)
T 1nsj_A 164 NVRSAIDVVRPFAVDVSSGVE 184 (205)
T ss_dssp THHHHHHHHCCSEEEESGGGE
T ss_pred HHHHHHHhcCCCEEEECCcee
Confidence 9987654 7999998766554
No 282
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.69 E-value=7e-05 Score=84.94 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...|+|+|.+++|||||+|.|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 457999999999999999999964
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.65 E-value=0.0001 Score=79.59 Aligned_cols=68 Identities=24% Similarity=0.133 Sum_probs=42.6
Q ss_pred ccEEEeCCCCCh--hhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNV--ILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~--~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~ 506 (921)
+++||||||... .......... ..+..+|.+++|+|+... .......+.+... .+ ..+|+||+|....
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~~-~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQA-SKIGTIIITKMDGTAK 254 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHT-CTTEEEEEECGGGCTT
T ss_pred CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHhh-CCCCEEEEeCCCCCcc
Confidence 689999999865 3222111111 123468999999998743 2334444444443 45 7889999998754
No 284
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=3.1e-05 Score=79.71 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=81.2
Q ss_pred HHHHHhCCCCeEEcCCC--CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC--------C
Q 002437 151 VDIAAAVNASGVLLSDQ--GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE--------G 220 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT--------k 220 (921)
++.+.++|||||||+.. .+|..+.+.+.......+. .+-+.||+.++..++ ...|++|+.+.|+. +
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl---~~iv~v~~~~e~~~~-~~~~~~~i~~~~~~~iGtG~~~~ 150 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGL---ETIVCTNNINTSKAV-AALSPDCIAVEPPELIGTGIPVS 150 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTC---EEEEEESSSHHHHHH-TTTCCSEEEECCCC---------
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCC---eEEEEeCCchHHHHH-HhCCCCEEEEEeccccccCCCCc
Confidence 78999999999999886 5776555554310000111 356678998888888 78899999999983 2
Q ss_pred CC-CC-cc--hhhhhhcC-CCCEEEEcCCCc-cChHHHHHcCCcEEEEeeccccc
Q 002437 221 QK-AD-VI--ENSLFTNV-KIPIFIMNASPL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 ~~-~g-~~--~~~~~~~~-~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. +. +. .+.+++.. ++||++.|||+. +++..+.+.|++|+.|-+|.++.
T Consensus 151 t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 151 KANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA 205 (219)
T ss_dssp -----CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred cCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence 21 22 22 13333333 799999999985 66777999999999999998875
No 285
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=97.62 E-value=2.8e-05 Score=82.62 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=63.1
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-----CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-----KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-----~~Pv~aiGG 243 (921)
+...+|... |..+ .++++|++++|+.+| .+.|+|||.+++. +++ .+.+++.. ++|+.|.||
T Consensus 171 ai~~~r~~~----~~~~---~i~vev~tlee~~~A-~~aGaD~I~ld~~-----~~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 171 FLTHARKNL----PFTA---KIEIECESFEEAKNA-MNAGADIVMCDNL-----SVLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHGGGS----CTTC---CEEEEESSHHHHHHH-HHHTCSEEEEETC-----CHHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHhC----CCCc---eEEEEcCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhhccCCCcEEEEECC
Confidence 455666665 3311 589999999999999 7899999999875 223 23222222 389999999
Q ss_pred CCccChHHHHHcCCcEEEEeec
Q 002437 244 SPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 244 i~~~~~~~~~~~Ga~gva~~~a 265 (921)
|+++|+.++.++|+++|++.++
T Consensus 238 I~~~ni~~~~~aGaD~i~vGs~ 259 (273)
T 2b7n_A 238 ISLESINAYAKSGVDAISVGAL 259 (273)
T ss_dssp CCTTTHHHHHTTTCSEEECTHH
T ss_pred CCHHHHHHHHHcCCcEEEEcHH
Confidence 9999999999999999977554
No 286
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=97.58 E-value=0.00049 Score=69.50 Aligned_cols=154 Identities=8% Similarity=-0.100 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCcEEEEeC-CCCCHHH-HHHHHHHHHHHhhc---CceEEecCc----HHHHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLNG-GEASGKS-VYEAACLLKSVVKD---RALFLIAER----VDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~-k~~~~~~-~~~~a~~l~~~~~~---~~~~ivnd~----~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
+-+..+.+.|++++=+=- +.. .+. -.+.|++|...+.. .+-+++|.. .+++..++.|.|||-.+. +...
T Consensus 12 eda~~a~~~GaD~iGfif~~~S-pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e-~~~~ 89 (203)
T 1v5x_A 12 EDALLAEALGAFALGFVLAPGS-RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGEE-PPEW 89 (203)
T ss_dssp HHHHHHHHHTCSEEEEECCTTC-TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSCC-CHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCC-CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCCC-CHHH
Confidence 557778889988766552 222 221 13556666665543 466889988 556778899999995443 5556
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcch--hhhhh--cCCCCEEEEcCCCccCh
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIE--NSLFT--NVKIPIFIMNASPLVDV 249 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~--~~~~~--~~~~Pv~aiGGi~~~~~ 249 (921)
.+.+ . .+..+ |-..++++..++ .+ ....+||++|-..+ ..-|... ..+.. ..+.||+.-||++++|+
T Consensus 90 ~~~l-~---~~~~v--ika~~v~~~~~l-~~-~~~~~d~~LlD~~~-gGtG~~fdW~~l~~~~~~~~p~~LAGGL~peNV 160 (203)
T 1v5x_A 90 AEAV-G---RFYPV--IKAFPLEGPARP-EW-ADYPAQALLLDGKR-PGSGEAYPRAWAKPLLATGRRVILAGGIAPENL 160 (203)
T ss_dssp HHHH-T---TTSCE--EEEEECSSSCCG-GG-GGSSCSEEEEECSS-TTSCCCCCGGGGHHHHHTTSCEEECSSCCSTTH
T ss_pred HHHh-c---cCCCE--EEEEEcCChHhh-hh-hhcCCCEEEEcCCC-CCCCCccCHHHHHhhhccCCcEEEECCCCHHHH
Confidence 6665 2 11122 456677766555 44 34449999986431 1111111 11222 24689999999999999
Q ss_pred HHHHHcCCcEEEEeeccc
Q 002437 250 SKFLKSGASGFVISLEDL 267 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~ 267 (921)
.++...+..||-+++..-
T Consensus 161 ~~ai~~~p~gVDvsSGvE 178 (203)
T 1v5x_A 161 EEVLALRPYALDLASGVE 178 (203)
T ss_dssp HHHHHHCCSEEEESGGGE
T ss_pred HHHHhcCCCEEEeCCcee
Confidence 877777999997766554
No 287
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.58 E-value=0.00017 Score=77.34 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=56.1
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
=+.||.. ......+.+.+..+|+|++|+|+..|.+..+..+-+.+ .++|+++|+||+|+.+. +..+...++..
T Consensus 4 ~w~PGhm---~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~-~~~~~~~~~~~- 76 (282)
T 1puj_A 4 QWFPGHM---AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA-AVTQQWKEHFE- 76 (282)
T ss_dssp -----CT---THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH-HHHHHHHHHHH-
T ss_pred cCCchHH---HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH-HHHHHHHHHHH-
Confidence 3568863 34456688889999999999999988766543333333 46899999999999853 33333222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.+++++||+.+
T Consensus 77 -------~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 77 -------NQGIRSLSINSVNG 90 (282)
T ss_dssp -------TTTCCEEECCTTTC
T ss_pred -------hcCCcEEEEECCCc
Confidence 12358999999875
No 288
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=97.57 E-value=0.00019 Score=72.67 Aligned_cols=156 Identities=13% Similarity=0.000 Sum_probs=99.9
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHH-H
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAI-V 173 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~-~ 173 (921)
++.....+.++++|++.+-+--..- .-.+..+.+++.+.. |+ .++=-+..+.|.+.||+=+--+.-+-.+. .
T Consensus 25 ~~a~~~a~al~~gGi~~iEvt~~t~---~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~ 101 (217)
T 3lab_A 25 VHAIPMAKALVAGGVHLLEVTLRTE---AGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEK 101 (217)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc---cHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHH
Confidence 4677888889999999988743322 234455556555532 22 23334567788888998775544322221 2
Q ss_pred HHH--hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEEcCCCccC
Q 002437 174 ARN--TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIMNASPLVD 248 (921)
Q Consensus 174 ~r~--~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~aiGGi~~~~ 248 (921)
+++ +-|.|. +.+---|-++.|+.+| .+.|+||+-+=|- ... |+. .+.++... ++|+++.|||+++|
T Consensus 102 ~~~~~v~~~~~------~~~~PG~~TptE~~~A-~~~Gad~vK~FPa--~~~gG~~~lkal~~p~p~i~~~ptGGI~~~N 172 (217)
T 3lab_A 102 AKQVKLDGQWQ------GVFLPGVATASEVMIA-AQAGITQLKCFPA--SAIGGAKLLKAWSGPFPDIQFCPTGGISKDN 172 (217)
T ss_dssp HHHHHHHCSCC------CEEEEEECSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHTTCTTCEEEEBSSCCTTT
T ss_pred HHHcCCCccCC------CeEeCCCCCHHHHHHH-HHcCCCEEEECcc--ccccCHHHHHHHHhhhcCceEEEeCCCCHHH
Confidence 222 211110 1122234699999999 8999999988664 222 344 56676665 58999999999999
Q ss_pred hHHHHHcCCcEEEEeecc
Q 002437 249 VSKFLKSGASGFVISLED 266 (921)
Q Consensus 249 ~~~~~~~Ga~gva~~~a~ 266 (921)
+.+.+++|+..++..+..
T Consensus 173 ~~~~l~aGa~~~vgGs~l 190 (217)
T 3lab_A 173 YKEYLGLPNVICAGGSWL 190 (217)
T ss_dssp HHHHHHSTTBCCEEESGG
T ss_pred HHHHHHCCCEEEEEChhh
Confidence 999999999666444333
No 289
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=97.50 E-value=5.4e-05 Score=81.28 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-----CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-----KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-----~~Pv~aiGG 243 (921)
+...+|+..+ +. + .++++|++++|+.+| .+.|+|||.+++. +++ .+.+++.. ++|+.|.||
T Consensus 186 ai~~~r~~~~---~~-~---~i~vev~tlee~~~A-~~aGaD~I~ld~~-----~~~~l~~~v~~l~~~~~~~~I~ASGG 252 (299)
T 2jbm_A 186 AVRAARQAAD---FA-L---KVEVECSSLQEAVQA-AEAGADLVLLDNF-----KPEELHPTATVLKAQFPSVAVEASGG 252 (299)
T ss_dssp HHHHHHHHHT---TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred HHHHHHHhCC---cC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhhccCCCeeEEEECC
Confidence 4567777763 32 2 588999999999999 7999999999875 233 23222222 389999999
Q ss_pred CCccChHHHHHcCCcEEEEeec
Q 002437 244 SPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 244 i~~~~~~~~~~~Ga~gva~~~a 265 (921)
|+++|+.++.++|+++|++.++
T Consensus 253 It~~ni~~~~~aGaD~i~vGs~ 274 (299)
T 2jbm_A 253 ITLDNLPQFCGPHIDVISMGML 274 (299)
T ss_dssp CCTTTHHHHCCTTCCEEECTHH
T ss_pred CCHHHHHHHHHCCCCEEEEChh
Confidence 9999999999999999976553
No 290
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=97.50 E-value=4.1e-05 Score=78.83 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=99.0
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe----cC----cHHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI----AE----RVDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv----nd----~~dla~~~~ 158 (921)
+|++-.|.. ...+.++.+++ +.+|++++-+--+ ..-..=.+..+.+++.+. +.++++ +| ..+.+.+.|
T Consensus 8 ~lilalD~~-~~~~~~~~~~~-~~~~vd~ie~g~~-~~~~~G~~~i~~lr~~~~-~~~i~ld~~l~d~p~~~~~~~~~aG 83 (218)
T 3jr2_A 8 MIQIALDQT-NLTDAVAVASN-VASYVDVIEVGTI-LAFAEGMKAVSTLRHNHP-NHILVCDMKTTDGGAILSRMAFEAG 83 (218)
T ss_dssp EEEEEECCS-SHHHHHHHHHH-HGGGCSEEEECHH-HHHHHTTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHHHHHT
T ss_pred CeEEEeCCC-CHHHHHHHHHH-hcCCceEEEeCcH-HHHhcCHHHHHHHHHhCC-CCcEEEEEeecccHHHHHHHHHhcC
Confidence 566655642 23356677776 5788999876311 000011234555555432 233432 23 356677889
Q ss_pred CCeE--EcCCCCCCHHHHHHh---cccCCCCccccC--eEEEecCCHHHHHcccccCCCCEEEeCCC-CC----CCCCcc
Q 002437 159 ASGV--LLSDQGLPAIVARNT---MKDSMSESVVLP--LVGRNVQTLDAAFNASSSEGADFLVCCFG-EG----QKADVI 226 (921)
Q Consensus 159 a~Gv--HL~~~~l~~~~~r~~---~~~~~~~~~~~~--~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk----~~~g~~ 226 (921)
+|++ |-....-....+.+. .| -. ++ ++|. .+.+++..+ .+.|+||+++.+. +. ...+..
T Consensus 84 ad~i~vh~~~~~~~~~~~~~~~~~~g---~~---~~~d~l~~--~T~~~~~~~-~~~g~d~v~~~~~~~~~~~g~~~~~~ 154 (218)
T 3jr2_A 84 ADWITVSAAAHIATIAACKKVADELN---GE---IQIEIYGN--WTMQDAKAW-VDLGITQAIYHRSRDAELAGIGWTTD 154 (218)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHT---CE---EEEECCSS--CCHHHHHHH-HHTTCCEEEEECCHHHHHHTCCSCHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHhC---Cc---cceeeeec--CCHHHHHHH-HHcCccceeeeeccccccCCCcCCHH
Confidence 9997 643321111222111 12 11 01 2333 356788887 6789999988554 11 111222
Q ss_pred -hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++. .++|+.+.|||+++|+.++.++||+++++.++..+.
T Consensus 155 ~l~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 155 DLDKMRQLSALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCC
Confidence 2334333 489999999999999999999999999999888764
No 291
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.46 E-value=0.00024 Score=76.88 Aligned_cols=81 Identities=23% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 454 RLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 454 ~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
.+.+.++.++|++++|+|+++|. +.... .++..+...+.|+++|+||+|+..+ .++.. .......... ...+
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~-~~v~~-~~~~~~~~~~----~g~~ 144 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE-EEKKE-LERWISIYRD----AGYD 144 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-HHHHH-HHHHHHHHHH----TTCE
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc-cccHH-HHHHHHHHHH----CCCe
Confidence 34446889999999999999874 55543 4666677788999999999999853 21111 1111222222 2368
Q ss_pred EEEecccch
Q 002437 532 IYPVSARST 540 (921)
Q Consensus 532 v~~vSA~~~ 540 (921)
++++||+++
T Consensus 145 ~~~~SA~~g 153 (302)
T 2yv5_A 145 VLKVSAKTG 153 (302)
T ss_dssp EEECCTTTC
T ss_pred EEEEECCCC
Confidence 999999987
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.43 E-value=0.00052 Score=77.93 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH-------CCCCCCCCCCCccce-------------eEEEEccCC-ccchh-hc-ccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL-------GKRYLKDGVVPTTNE-------------ITFLRFSDL-ASEEQ-QR-CER 419 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl-------g~~~~~~~~~~tT~~-------------~~~~~~~~~-~~~~~-~~-~~~ 419 (921)
.+..|+|+|.+|+||||+...|. |.+++..+..+.... +.++..... +.... .. ...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999997 766654333321110 000000000 00000 00 000
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHH--HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEE
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRL--TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVF 496 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~--~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-viv 496 (921)
... .-.+++||||||........... ....+..+|.+++|+|+.... ......+.+... .+ .-+
T Consensus 179 ~~~----------~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~-l~i~gv 245 (433)
T 2xxa_A 179 AKL----------KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEA-LPLTGV 245 (433)
T ss_dssp HHH----------TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHH-SCCCCE
T ss_pred HHh----------CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhcc-CCCeEE
Confidence 000 01269999999975432222111 112345789999999997542 223333333332 33 457
Q ss_pred EEeCCCCCCC
Q 002437 497 VLNKSDLYQN 506 (921)
Q Consensus 497 VlNK~D~~~~ 506 (921)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 9999998644
No 293
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=97.40 E-value=0.00016 Score=77.42 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~~ 247 (921)
...+|... |+. .|+++|++++++.+| .+.|+|||.++++ +++ .+.+++.. ++|+.|.|||+++
T Consensus 199 i~~~r~~~----~~~----kI~vev~tlee~~eA-~~aGaD~I~ld~~-----~~e~l~~~v~~~~~~~~I~ASGGIt~~ 264 (296)
T 1qap_A 199 VEKAFWLH----PDV----PVEVEVENLDELDDA-LKAGADIIMLDNF-----NTDQMREAVKRVNGQARLEVSGNVTAE 264 (296)
T ss_dssp HHHHHHHS----TTS----CEEEEESSHHHHHHH-HHTTCSEEEESSC-----CHHHHHHHHHTTCTTCCEEECCCSCHH
T ss_pred HHHHHHhC----CCC----cEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEECCCCHH
Confidence 45667766 331 488899999999999 8999999999875 222 23344433 6899999999999
Q ss_pred ChHHHHHcCCcEEEEee
Q 002437 248 DVSKFLKSGASGFVISL 264 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~ 264 (921)
|+.++.++|+++|++..
T Consensus 265 ~i~~~a~~GvD~isvGs 281 (296)
T 1qap_A 265 TLREFAETGVDFISVGA 281 (296)
T ss_dssp HHHHHHHTTCSEEECSH
T ss_pred HHHHHHHcCCCEEEEeH
Confidence 99999999999997654
No 294
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.40 E-value=0.0004 Score=81.02 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred cHHHHHhCCCCeEEcCCC-CCC------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--C--C
Q 002437 150 RVDIAAAVNASGVLLSDQ-GLP------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--F--G 218 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~~-~l~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--p--v 218 (921)
+.+.+.+.|+|+||+... ..+ +...|... |+ . .+++-++++.++++.+ .+.|+|||.+| | .
T Consensus 259 ~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~----~~-~--pvi~~~v~t~~~a~~l-~~aGad~I~vg~~~G~~ 330 (514)
T 1jcn_A 259 RLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY----PH-L--QVIGGNVVTAAQAKNL-IDAGVDGLRVGMGCGSI 330 (514)
T ss_dssp HHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC----TT-C--EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSCC
T ss_pred HHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC----CC-C--ceEecccchHHHHHHH-HHcCCCEEEECCCCCcc
Confidence 345667789999998222 222 23334443 23 2 2455578999999999 89999999774 3 2
Q ss_pred --CCC--CCCcc-------hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 219 --EGQ--KADVI-------ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 --Tk~--~~g~~-------~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. ..++++..++||+|.|||. +.++.+++++||++|.+.++.+.
T Consensus 331 ~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~ 392 (514)
T 1jcn_A 331 CITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAA 392 (514)
T ss_dssp BTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHc
Confidence 222 23421 2566677799999999995 78999999999999998877655
No 295
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=97.39 E-value=7.8e-05 Score=79.84 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=54.9
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC--------CCCEEEE
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV--------KIPIFIM 241 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~--------~~Pv~ai 241 (921)
+...+|+..+ +. + .++++|++++|+.+| .+.|+|||.+++.+. ..+ +.+++.. ++|+.|.
T Consensus 188 ai~~~r~~~~---~~-~---~i~vev~tlee~~~A-~~aGaD~I~ld~~~~--~~l--~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 188 AVKNARAVCG---FA-V---KIEVECLSEDEATEA-IEAGADVIMLDNFKG--DGL--KMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHC---TT-S---CEEEECSSSHHHHHH-HHHTCSEEECCC-------------------------CCEEEEE
T ss_pred HHHHHHHhcC---cC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCCCH--HHH--HHHHHHhcccccCCCCeEEEEE
Confidence 4566777763 22 2 588999999999999 789999999988621 112 2222222 2899999
Q ss_pred cCCCccChHHHHHcCCcEEEEeecc
Q 002437 242 NASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
|||+++|+.++.++|+++|++.++.
T Consensus 256 GGIt~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGLNLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCCCC------CCCSCSEEECGGGT
T ss_pred CCCCHHHHHHHHHcCCCEEEEechh
Confidence 9999999999999999999876654
No 296
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.33 E-value=0.00035 Score=77.81 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=66.7
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (921)
+.+...+..+.+.+|++|+|+|+.++. ..+...+.+ .++|+++|+||+|+.+.....+.+.+++...... .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~-~g~ 131 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ-LGL 131 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHH-cCC
Confidence 567777888888999999999998642 222222222 2689999999999986532233343443333332 232
Q ss_pred CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 528 ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 528 ~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+++++||+++ .|+++|.+.+.+..
T Consensus 132 ~~~~v~~iSA~~g---------------------------~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKG---------------------------QGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCC---------------------------cCHHHHHhhhhhhc
Confidence 2347999999987 68888888887653
No 297
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.32 E-value=0.00025 Score=79.03 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIEN 529 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (921)
+.+.+....+...+|++|+|+|+.++.......+.+.+ .++|+++|+||+|+.+.....+.+.+++...+.. .+...
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~-~g~~~ 135 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE-LGLCP 135 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT-TTCCC
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH-cCCCc
Confidence 45667777777899999999999876532111122222 2689999999999986532233344444433332 23222
Q ss_pred CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 530 VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 530 ~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+++++||+++ .|+++|.+.+.+..
T Consensus 136 ~~v~~iSA~~g---------------------------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 136 VDVCLVSAAKG---------------------------IGMAKVMEAINRYR 160 (369)
T ss_dssp SEEEECBTTTT---------------------------BTHHHHHHHHHHHH
T ss_pred ccEEEEECCCC---------------------------CCHHHHHHHHHhhc
Confidence 47999999987 68888888887654
No 298
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.30 E-value=0.00024 Score=79.53 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=48.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC----------CCCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR----------PLTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~----------~~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..+++.++++|||+|.++ ..+..+ ..++..+.. .+.|+++|+||
T Consensus 218 ~l~iwDtaGQ----e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK 293 (402)
T 1azs_C 218 NFHMFDVGGQ----RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK 293 (402)
T ss_dssp EEEEEEECCS----GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEEC
T ss_pred cceecccchh----hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 4789999997 3445668889999999999999986 333333 245565543 34699999999
Q ss_pred CCCC
Q 002437 501 SDLY 504 (921)
Q Consensus 501 ~D~~ 504 (921)
+|+.
T Consensus 294 ~DL~ 297 (402)
T 1azs_C 294 QDLL 297 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9974
No 299
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00019 Score=79.31 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=47.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|.. .....+..+++.+|++|||+|.+ +..+..+ ..++..+.. .+.|+++|+||
T Consensus 184 ~l~iwDtaGQe----~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 184 VYRLFDVGGQR----NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp EEEEEEECCST----TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred eeEEEECCCch----hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEEC
Confidence 48999999973 34456788999999999999986 3322222 235555543 35799999999
Q ss_pred CCCC
Q 002437 501 SDLY 504 (921)
Q Consensus 501 ~D~~ 504 (921)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9974
No 300
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=97.23 E-value=0.0011 Score=70.37 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=94.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCC----HHH-----------------HHHHHHHHHHHhhcCceEEe----c-----
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEAS----GKS-----------------VYEAACLLKSVVKDRALFLI----A----- 148 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~-----------------~~~~a~~l~~~~~~~~~~iv----n----- 148 (921)
..+.+.++...++|+++|.+=-|-.+ ... ..+.++++++.+- ..++++ |
T Consensus 31 ~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~Pv~lm~y~n~v~~~ 109 (268)
T 1qop_A 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHP-TIPIGLLMYANLVFNN 109 (268)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-SSCEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEEEEEcccHHHHh
Confidence 46777888888999999999776532 222 2344555554411 245544 3
Q ss_pred ---CcHHHHHhCCCCeEEcCCCCCCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHccc-ccCCCCEEEeCC--CCCC
Q 002437 149 ---ERVDIAAAVNASGVLLSDQGLPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGADFLVCCF--GEGQ 221 (921)
Q Consensus 149 ---d~~dla~~~~a~GvHL~~~~l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~gaDyv~~gp--vTk~ 221 (921)
..++.+.+.|+||+.+....... ....+.....+.+ . + .+..-+++.+.+...+ ...|..|++ +. +|..
T Consensus 110 g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~-~-i-~l~~p~t~~~~i~~i~~~~~g~v~~~-s~~G~tG~ 185 (268)
T 1qop_A 110 GIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIA-P-I-FICPPNADDDLLRQVASYGRGYTYLL-SRSGVTGA 185 (268)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCE-E-E-CEECTTCCHHHHHHHHHHCCSCEEEE-SSSSCCCS
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCc-E-E-EEECCCCCHHHHHHHHhhCCCcEEEE-ecCCcCCC
Confidence 23455777899999997443211 1111111000011 1 1 1222234445443320 234444443 21 2332
Q ss_pred ----CCCc-c-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 222 ----KADV-I-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 222 ----~~g~-~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.. . .+.+++..++||++-|||+ ++++.++..+||+||.|-+|..+.
T Consensus 186 ~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp SSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred ccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 1222 2 4677777799999999998 999999999999999988887665
No 301
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=97.19 E-value=0.00029 Score=78.21 Aligned_cols=75 Identities=8% Similarity=-0.013 Sum_probs=58.0
Q ss_pred HHcccccCCCCEEEeCCCC---CCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHH
Q 002437 201 AFNASSSEGADFLVCCFGE---GQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT---k~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~ 275 (921)
++.+ .+.|+||+.++..| ++..... ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+.
T Consensus 256 a~~l-~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~--P~l~ 332 (365)
T 2gou_A 256 AALL-NKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIAN--PDLP 332 (365)
T ss_dssp HHHH-HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHC--TTHH
T ss_pred HHHH-HHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhC--chHH
Confidence 4555 67899999998753 1221223 467888889999999999999999999998 9999999988865 4455
Q ss_pred Hhh
Q 002437 276 SQM 278 (921)
Q Consensus 276 ~~~ 278 (921)
+++
T Consensus 333 ~~~ 335 (365)
T 2gou_A 333 ERL 335 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 302
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.12 E-value=0.079 Score=59.68 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHH
Q 002437 364 PFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLl 385 (921)
...|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4578899999999999999775
No 303
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=97.12 E-value=0.00034 Score=77.63 Aligned_cols=75 Identities=8% Similarity=0.099 Sum_probs=57.3
Q ss_pred HHcccccCCCCEEEeCCCC---CCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHH
Q 002437 201 AFNASSSEGADFLVCCFGE---GQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT---k~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~ 275 (921)
++.+ ++.|+||+.++.-+ .++.... ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+.
T Consensus 257 a~~l-~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~--P~~~ 333 (364)
T 1vyr_A 257 IEEL-AKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIAN--PDLV 333 (364)
T ss_dssp HHHH-HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC--TTHH
T ss_pred HHHH-HHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhC--hhHH
Confidence 4455 67899999998632 1222222 467888899999999999999999999998 9999999988875 3455
Q ss_pred Hhh
Q 002437 276 SQM 278 (921)
Q Consensus 276 ~~~ 278 (921)
+++
T Consensus 334 ~~~ 336 (364)
T 1vyr_A 334 ARL 336 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 304
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=97.11 E-value=0.00088 Score=70.71 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=105.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~ 145 (921)
--|+.... .+.+.+.+.+..+.++|+++|-|=-|-.++ ..+.+..+++++.. ..+++
T Consensus 23 i~yi~aGd-P~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~-~~~Pi 100 (271)
T 3nav_A 23 VPFVTIGD-PNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARN-PETPI 100 (271)
T ss_dssp EEEEETTS-SCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTSCE
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCE
Confidence 34554332 233467788888889999999987664321 13334444444331 13566
Q ss_pred EecC------------cHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCC
Q 002437 146 LIAE------------RVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGA 210 (921)
Q Consensus 146 ivnd------------~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~ga 210 (921)
++-. ..+-|.+.|+|||.++ |+|..++ ++.....+-+ .+ .+-..+.+.+.+... .+.+.
T Consensus 101 vlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip--Dlp~ee~~~~~~~~~~~gl~-~I--~lvap~t~~eri~~i-~~~~~ 174 (271)
T 3nav_A 101 GLLMYANLVYARGIDDFYQRCQKAGVDSVLIA--DVPTNESQPFVAAAEKFGIQ-PI--FIAPPTASDETLRAV-AQLGK 174 (271)
T ss_dssp EEEECHHHHHHTCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCE-EE--EEECTTCCHHHHHHH-HHHCC
T ss_pred EEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHcCCe-EE--EEECCCCCHHHHHHH-HHHCC
Confidence 6522 3556677899999996 5664332 2221100022 11 123333456667766 56677
Q ss_pred CEEEeCCC---CCCC----CCcc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 211 DFLVCCFG---EGQK----ADVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 211 Dyv~~gpv---Tk~~----~g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+|+-+-+. |... ..+. ...+++..++||++-||| +++++.+....||+||.|-+|.++.
T Consensus 175 gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~ 243 (271)
T 3nav_A 175 GYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKI 243 (271)
T ss_dssp SCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHH
T ss_pred CeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 88776332 4322 1222 367777789999999999 5899998999999999888887765
No 305
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.0028 Score=66.88 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=98.0
Q ss_pred cCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceEEe---
Q 002437 92 PHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALFLI--- 147 (921)
Q Consensus 92 t~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~iv--- 147 (921)
|....+.+...+.++...++|+++|-+=-|-.++ ..+.+.++++++.+. +.++++
T Consensus 24 ~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~Pi~~m~y 102 (262)
T 2ekc_A 24 MVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFP-DIPFLLMTY 102 (262)
T ss_dssp ETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TSCEEEECC
T ss_pred cCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCEEEEec
Confidence 4433333467778888889999999997765431 223344555554431 356666
Q ss_pred -c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc-CCCCccccCeEEEecCCHHHHHcc-cccCCCCEEEeC
Q 002437 148 -A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTMKD-SMSESVVLPLVGRNVQTLDAAFNA-SSSEGADFLVCC 216 (921)
Q Consensus 148 -n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~-~~~~~~~~~~ig~S~h~~~e~~~A-~~~~gaDyv~~g 216 (921)
| ..++.|.+.|+||++++ |+|.......... .+.+..++.++ ..+++.+.+... ....|..|++ +
T Consensus 103 ~n~v~~~g~~~f~~~~~~aG~dgvii~--dl~~ee~~~~~~~~~~~gl~~i~l~-~p~t~~~rl~~ia~~a~gfiy~v-s 178 (262)
T 2ekc_A 103 YNPIFRIGLEKFCRLSREKGIDGFIVP--DLPPEEAEELKAVMKKYVLSFVPLG-APTSTRKRIKLICEAADEMTYFV-S 178 (262)
T ss_dssp HHHHHHHCHHHHHHHHHHTTCCEEECT--TCCHHHHHHHHHHHHHTTCEECCEE-CTTCCHHHHHHHHHHCSSCEEEE-S
T ss_pred CcHHHHhhHHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEe-CCCCCHHHHHHHHHhCCCCEEEE-e
Confidence 3 23456778999999997 5665444332100 00010111122 223444433321 0234555544 3
Q ss_pred C--CCCC--CCC---c-c-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 217 F--GEGQ--KAD---V-I-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 217 p--vTk~--~~g---~-~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
. +|.. +.. + . .+.+++..++||++-|||+ ++++.+ ...||+||.|-+|..+..
T Consensus 179 ~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~ 241 (262)
T 2ekc_A 179 VTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLA 241 (262)
T ss_dssp SCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHH
T ss_pred cCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhh
Confidence 2 2322 111 2 1 4677777899999999997 889999 677999999888877653
No 306
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.01 E-value=0.0021 Score=70.14 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred ccEEEeCCCCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.++||+|...... +...+. .. -..|-.++|+|+... ..-.+.++.+.+.....++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~-ra-l~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a~ 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIA-RV-TKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADAR 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHH-HH-HCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred hhhHHhhccchhHHHHHHHHHHHHH-HH-hcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCccc
Confidence 578999999853222 112222 12 247889999997754 23334445454444556789999997544
No 307
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.00 E-value=0.0019 Score=69.83 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred ccEEEeCCCCChhhhHHHH---HHHHhc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQR---LTEEFV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~---~~~~~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||.......... .....+ ..+|.+++|+|+... .......+.+.+.....-+|+||.|....
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDGTAK 264 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCCccc
Confidence 6899999997432221111 112222 358899999998722 22333333333333345578899998655
No 308
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=96.96 E-value=0.0002 Score=74.10 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=64.1
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC------CC---------------------CC--------C-CCCcc-hhhhhhc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC------FG---------------------EG--------Q-KADVI-ENSLFTN 233 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g------pv---------------------Tk--------~-~~g~~-~~~~~~~ 233 (921)
+=+-|+|++|+.++ ..+|||+|.-= -| |+ . .++.+ ..++.+.
T Consensus 118 fv~~~~~l~EAlrr-i~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~ 196 (291)
T 3o07_A 118 FVCGAKDLGEALRR-INEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK 196 (291)
T ss_dssp EEEEESSHHHHHHH-HHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHH-HHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc
Confidence 33457899999999 89999999841 11 10 0 12222 3677777
Q ss_pred CCCCEEEE--cCC-CccChHHHHHcCCcEEEEeecccccchHHHHHh
Q 002437 234 VKIPIFIM--NAS-PLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQ 277 (921)
Q Consensus 234 ~~~Pv~ai--GGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~ 277 (921)
.++||++| ||| +++++..++++|++||.|.+++++.-.+...-+
T Consensus 197 ~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Ak 243 (291)
T 3o07_A 197 GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLAT 243 (291)
T ss_dssp TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHH
T ss_pred cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHH
Confidence 89999776 999 799999999999999999999998655544443
No 309
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=96.96 E-value=0.0016 Score=68.67 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=102.5
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC----CCHH-----------------HHHHHHHHHHHHhhcCceEE
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE----ASGK-----------------SVYEAACLLKSVVKDRALFL 146 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~----~~~~-----------------~~~~~a~~l~~~~~~~~~~i 146 (921)
-|+.... .+.+.+.+.+..+.++|+++|.|=-|- .+.. .+.+..+++++.. ...+++
T Consensus 22 ~yi~aGd-P~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~-~~~Piv 99 (267)
T 3vnd_A 22 PFVTIGD-PSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH-PDMPIG 99 (267)
T ss_dssp EEEETTS-SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCCEE
T ss_pred EEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCEE
Confidence 3554332 223467788888889999999997543 2322 2233344444331 135665
Q ss_pred ecC------------cHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCC
Q 002437 147 IAE------------RVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD 211 (921)
Q Consensus 147 vnd------------~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD 211 (921)
+-. ..+-+.+.|+||+.++ |+|..+. ++.....+-+ .+ .+-..+.+.+.+... .+.+-+
T Consensus 100 lm~Y~npv~~~g~e~f~~~~~~aGvdgvii~--Dlp~ee~~~~~~~~~~~gl~-~i--~liaP~t~~eri~~i-~~~~~g 173 (267)
T 3vnd_A 100 LLLYANLVFANGIDEFYTKAQAAGVDSVLIA--DVPVEESAPFSKAAKAHGIA-PI--FIAPPNADADTLKMV-SEQGEG 173 (267)
T ss_dssp EEECHHHHHHHCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCE-EE--CEECTTCCHHHHHHH-HHHCCS
T ss_pred EEecCcHHHHhhHHHHHHHHHHcCCCEEEeC--CCCHhhHHHHHHHHHHcCCe-EE--EEECCCCCHHHHHHH-HHhCCC
Confidence 532 3556677899999996 5554322 2221100022 11 122333456666665 455556
Q ss_pred EEEe---CCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 212 FLVC---CFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 212 yv~~---gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
||-+ -++|.. +..+. .+.+++..++||++-|||+ ++++.+....||+||.|-+|.++.
T Consensus 174 fvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~ 241 (267)
T 3vnd_A 174 YTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKI 241 (267)
T ss_dssp CEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred cEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 7665 233432 22232 3677777899999999995 899998999999999888877665
No 310
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.96 E-value=0.0049 Score=67.03 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=39.9
Q ss_pred cccEEEeCCCCChhhhHH-HHH--HHHh----c-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQ-QRL--TEEF----V-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~-~~~--~~~~----l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||........ .++ .... + ..+|.+++|+++... .....-.+.+...-...=+|+||.|....
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~~~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSKVADVSGIILTKMDSTSK 269 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTTTSCCCEEEEECGGGCSC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhhcCCCcEEEEeCCCCCCc
Confidence 369999999985432111 111 1112 2 358999999998843 33333333333322334479999997644
No 311
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=96.96 E-value=0.0013 Score=72.27 Aligned_cols=110 Identities=18% Similarity=0.042 Sum_probs=71.2
Q ss_pred cHHHHHhCCCCeEEcCCC-CCC------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC--
Q 002437 150 RVDIAAAVNASGVLLSDQ-GLP------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG-- 218 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~~-~l~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv-- 218 (921)
+.+.+.+.|+|-|.+... ..+ +...|... |+. .++.-.+.++++++.| .+.|||+|.+| |-
T Consensus 104 ~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~----~~~---~Vi~G~V~T~e~A~~a-~~aGaD~I~Vg~g~G~~ 175 (361)
T 3r2g_A 104 RAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLL----GSR---CIMAGNVATYAGADYL-ASCGADIIKAGIGGGSV 175 (361)
T ss_dssp HHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHH----TTC---EEEEEEECSHHHHHHH-HHTTCSEEEECCSSSSC
T ss_pred HHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhc----CCC---eEEEcCcCCHHHHHHH-HHcCCCEEEEcCCCCcC
Confidence 456666789998766211 112 22334443 331 1344368899999999 89999999985 32
Q ss_pred --CCC--CCCcc-h---hhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 --EGQ--KADVI-E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 --Tk~--~~g~~-~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. . .++++... ||+|-||| ++.++.+++++||++|.+-++.+.
T Consensus 176 ~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~ 233 (361)
T 3r2g_A 176 CSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAG 233 (361)
T ss_dssp HHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTT
T ss_pred ccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 111 22332 2 33333333 99999999 589999999999999988665544
No 312
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=96.92 E-value=0.0019 Score=74.58 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHhCCCCeEEcCCCCC-C------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----C
Q 002437 153 IAAAVNASGVLLSDQGL-P------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----E 219 (921)
Q Consensus 153 la~~~~a~GvHL~~~~l-~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----T 219 (921)
.+.+.|+|.|++..... + +...|... |+ . .+++-.+++.++++.+ .+.|||+|.+| |- |
T Consensus 236 ~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~----p~-~--~Vi~g~v~t~e~a~~l-~~aGaD~I~vg~g~Gs~~~t 307 (490)
T 4avf_A 236 ALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTF----PD-V--QVIGGNIATAEAAKAL-AEAGADAVKVGIGPGSICTT 307 (490)
T ss_dssp HHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHC----TT-S--EEEEEEECSHHHHHHH-HHTTCSEEEECSSCSTTCHH
T ss_pred HHhhcccceEEecccCCcchhHHHHHHHHHHHC----CC-c--eEEEeeeCcHHHHHHH-HHcCCCEEEECCCCCcCCCc
Confidence 34456899888854332 1 22334443 33 1 2566678999999999 89999999985 32 1
Q ss_pred C--CCCCcc----hhhhhh---cCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 220 G--QKADVI----ENSLFT---NVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 220 k--~~~g~~----~~~~~~---~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. ...|.. ..++++ ...+||+|-||| ++.++.+++++||++|.+-++...
T Consensus 308 ~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~ 366 (490)
T 4avf_A 308 RIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG 366 (490)
T ss_dssp HHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred cccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence 1 122322 233333 458999999999 799999999999999988766554
No 313
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.89 E-value=0.0031 Score=63.35 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=61.5
Q ss_pred ccEEEeCCCCChh--hhHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHHH-HHHhhh----cCCeEEEEEeCC-CCC
Q 002437 436 EMIIVDTPGTNVI--LQRQQRLTEEFVPRADLVLFVISADRPL---TESEVVF-LRYTQQ----WKKKVVFVLNKS-DLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~--~~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~~-l~~l~~----~~~~vivVlNK~-D~~ 504 (921)
.+....+||-+.. -......++.|+..+|++|||+|+++.. ...+++- ...+.+ .+.|++|+.||. |+.
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 4566777863222 2345667999999999999999997542 2233221 222322 457999999996 564
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 505 QNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 505 ~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. -...++.+.+. +..+ . ....|+++||.+| .|+.+=.++|.+.+.
T Consensus 177 ~A-ms~~EI~e~L~--L~~l-~-R~W~Iq~csA~TG---------------------------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 KR-MPCFYLAHELH--LNLL-N-HPWLVQDTEAETL---------------------------TGFLNGIEWILEEVE 222 (227)
T ss_dssp CB-CCHHHHHHHTT--GGGG-C-SCEEEEEEETTTC---------------------------TTHHHHHHHHTTTTT
T ss_pred CC-CCHHHHHHHcC--CcCC-C-CCEEEEEeECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 32 12233333322 2222 2 4578999999987 577776677766655
No 314
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.89 E-value=0.0032 Score=67.96 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhH--------HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQR--------QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--------~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.++||+|....... ...+.+......+.+++++|+... ..-.+.+..+.+.....++++||.|....
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHCCSEEEEECTTSSCC
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence 4779999997432111 112223334678889999998754 23344455554433446789999987644
No 315
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=96.88 E-value=0.002 Score=72.57 Aligned_cols=75 Identities=27% Similarity=0.209 Sum_probs=55.2
Q ss_pred EecCCHHHHHcccccCCCCEEEeCCC--C------CCCCCc---c-hhhh---hhcCCCCEEEEcCCC-ccChHHHHHcC
Q 002437 193 RNVQTLDAAFNASSSEGADFLVCCFG--E------GQKADV---I-ENSL---FTNVKIPIFIMNASP-LVDVSKFLKSG 256 (921)
Q Consensus 193 ~S~h~~~e~~~A~~~~gaDyv~~gpv--T------k~~~g~---~-~~~~---~~~~~~Pv~aiGGi~-~~~~~~~~~~G 256 (921)
-.+++.+++..| .+.|+|||.+|.- + ....|. . ...+ +...++||+|.|||. ++++.+++++|
T Consensus 200 ~~v~~~~~a~~a-~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~G 278 (404)
T 1eep_A 200 GNIVTKEAALDL-ISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_dssp EEECSHHHHHHH-HTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHT
T ss_pred cCCCcHHHHHHH-HhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcC
Confidence 367889999999 8999999999521 1 111122 1 2233 335689999999996 89999999999
Q ss_pred CcEEEEeecccc
Q 002437 257 ASGFVISLEDLS 268 (921)
Q Consensus 257 a~gva~~~a~~~ 268 (921)
|++|.+.++.+.
T Consensus 279 Ad~V~iG~~~l~ 290 (404)
T 1eep_A 279 ADSVMIGNLFAG 290 (404)
T ss_dssp CSEEEECHHHHT
T ss_pred CCHHhhCHHHhc
Confidence 999988666543
No 316
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.87 E-value=0.0004 Score=73.45 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=50.0
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 002437 454 RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533 (921)
Q Consensus 454 ~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 533 (921)
..+...+..+|+|++|+|+..|.+..... +. +. ++|.++|+||+|+.+. +..+...+... . .+.++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll--~k~~iivlNK~DL~~~-~~~~~~~~~~~----~----~g~~v- 78 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYG-VD-FS--RKETIILLNKVDIADE-KTTKKWVEFFK----K----QGKRV- 78 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT--TSEEEEEEECGGGSCH-HHHHHHHHHHH----H----TTCCE-
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc--CCCcEEEEECccCCCH-HHHHHHHHHHH----H----cCCeE-
Confidence 45778889999999999999887654322 12 22 8999999999999853 33333333222 1 23567
Q ss_pred Eecccch
Q 002437 534 PVSARST 540 (921)
Q Consensus 534 ~vSA~~~ 540 (921)
++||+.+
T Consensus 79 ~iSa~~~ 85 (262)
T 3cnl_A 79 ITTHKGE 85 (262)
T ss_dssp EECCTTS
T ss_pred EEECCCC
Confidence 9999876
No 317
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=96.84 E-value=0.0034 Score=65.31 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccC-CCCEEEeCCC--CCCCCCcc-
Q 002437 151 VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSE-GADFLVCCFG--EGQKADVI- 226 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~-gaDyv~~gpv--Tk~~~g~~- 226 (921)
+..|...|||+|-|--..++....+.+......-+. .+=+-|||.+|+.+| ... |+|+|++-+- +....++.
T Consensus 116 i~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl---~~lvEv~~~eE~~~A-~~l~g~~iIGinnr~l~t~~~d~~~ 191 (251)
T 1i4n_A 116 VKLASSVGADAILIIARILTAEQIKEIYEAAEELGM---DSLVEVHSREDLEKV-FSVIRPKIIGINTRDLDTFEIKKNV 191 (251)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTC---EEEEEECSHHHHHHH-HTTCCCSEEEEECBCTTTCCBCTTH
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCC---eEEEEeCCHHHHHHH-HhcCCCCEEEEeCcccccCCCCHHH
Confidence 334566899999886666664333333210000001 345577999999999 899 9999999875 22223343
Q ss_pred hhhhhhcC--CCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNV--KIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~--~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+...+ .+++++-|||+ ++++..+.++ ++||.|-.+.|+.
T Consensus 192 ~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 192 LWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp HHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHC
T ss_pred HHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 34566655 47899999995 9999999999 9999988888875
No 318
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.83 E-value=0.0023 Score=65.88 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=100.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC--CCCCHHHHHHHHHHHHHHhhc-CceEEe----cCcHHHHHhCCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG--GEASGKSVYEAACLLKSVVKD-RALFLI----AERVDIAAAVNA 159 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~--k~~~~~~~~~~a~~l~~~~~~-~~~~iv----nd~~dla~~~~a 159 (921)
+++.|..... ..+.++.+. ..+++++.+-- ++.+. .++++.+++.+.. ..++++ .+...-+.+.|+
T Consensus 4 ~v~~v~~~~~-~~~a~~~~~---~~~~dlvl~D~~~p~~~g---~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga 76 (237)
T 3cwo_X 4 RVLIVDDATN-GREAVEKYK---ELKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGA 76 (237)
T ss_dssp CEEEEECCCS-SSTTHHHHH---HHCCSCEEEECCSTTSSH---HHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTC
T ss_pred EEEEEEECCC-HHHHHHHHH---hcCCCEEEEeCCCCCCCH---HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCH
Confidence 4566655322 223344443 45677666643 44443 5677788877765 667776 345566777899
Q ss_pred CeEEcCC---C-CCCHHHHHHhcccCCCCccccCeEEE-------------------ecCCHHH-HHcccccCCCCEEEe
Q 002437 160 SGVLLSD---Q-GLPAIVARNTMKDSMSESVVLPLVGR-------------------NVQTLDA-AFNASSSEGADFLVC 215 (921)
Q Consensus 160 ~GvHL~~---~-~l~~~~~r~~~~~~~~~~~~~~~ig~-------------------S~h~~~e-~~~A~~~~gaDyv~~ 215 (921)
++++... . +......+..++ .. .+ .+.. +..++.+ +.+. ...|+.++++
T Consensus 77 ~~~l~kp~~~~~~~l~~~i~~~~~---~~-~~--~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~-~~~~~~~vli 149 (237)
T 3cwo_X 77 KDFIVNTAAVENPSLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILL 149 (237)
T ss_dssp CEEEESHHHHHCTHHHHHHHHHHT---GG-GE--EEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHH-HHHTCSEEEE
T ss_pred HheEeCCcccChHHHHHHHHHHhC---CC-ce--EEEeeecccCCcEEEEEeCCccccccCHHHHHHHH-hhcCCCeEEE
Confidence 9999863 1 111223344443 12 11 1111 1124433 4454 5678887766
Q ss_pred CCC--CCCCCCcc---hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 216 CFG--EGQKADVI---ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 216 gpv--Tk~~~g~~---~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
-.+ +....|+. ..++....++|++|+||++ ++++.++.++|++|+++.+|....
T Consensus 150 ~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 150 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred EecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 544 22223332 4677777899999999997 788999999999999988887544
No 319
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=96.80 E-value=0.0013 Score=69.91 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=62.5
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhh-cCCCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFT-NVKIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~-~~~~Pv~aiGGi~~ 246 (921)
.+..+|... |.. .|.+.|+|.+++.+| .+.|+|||.+..++. ..+. ...+.. ..++|+.|.|||++
T Consensus 184 av~~ar~~~----~~~----~I~Vev~t~eea~ea-l~aGaD~I~LDn~~~--~~~~~~v~~l~~~~~~v~ieaSGGIt~ 252 (284)
T 1qpo_A 184 ALRAVRNAA----PDL----PCEVEVDSLEQLDAV-LPEKPELILLDNFAV--WQTQTAVQRRDSRAPTVMLESSGGLSL 252 (284)
T ss_dssp HHHHHHHHC----TTS----CEEEEESSHHHHHHH-GGGCCSEEEEETCCH--HHHHHHHHHHHHHCTTCEEEEESSCCT
T ss_pred HHHHHHHhC----CCC----CEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--HHHHHHHHHhhccCCCeEEEEECCCCH
Confidence 345667765 442 488899999999999 899999999987622 1111 122222 12689999999999
Q ss_pred cChHHHHHcCCcEEEEee
Q 002437 247 VDVSKFLKSGASGFVISL 264 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~ 264 (921)
+|+.++.++|+++|.+..
T Consensus 253 ~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 253 QTAATYAETGVDYLAVGA 270 (284)
T ss_dssp TTHHHHHHTTCSEEECGG
T ss_pred HHHHHHHhcCCCEEEECH
Confidence 999999999999997443
No 320
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=96.79 E-value=0.0015 Score=68.78 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=59.9
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
...+|... |. + -|.+.|+|++|+.+| .+.|+|+|.|-.. .++ .+++.+. -++++.|.|||+++
T Consensus 189 v~~ar~~~----~~-~---~IeVEv~tl~ea~eA-l~aGaD~I~LDn~-----~~~~l~~av~~~~~~v~ieaSGGIt~~ 254 (287)
T 3tqv_A 189 VTKAKKLD----SN-K---VVEVEVTNLDELNQA-IAAKADIVMLDNF-----SGEDIDIAVSIARGKVALEVSGNIDRN 254 (287)
T ss_dssp HHHHHHHC----TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTTCEEEEESSCCTT
T ss_pred HHHHHhhC----CC-C---cEEEEeCCHHHHHHH-HHcCCCEEEEcCC-----CHHHHHHHHHhhcCCceEEEECCCCHH
Confidence 34556653 55 2 478899999999999 8999999999654 122 2333332 27899999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.++.++|+++|.+
T Consensus 255 ~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 255 SIVAIAKTGVDFISV 269 (287)
T ss_dssp THHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999964
No 321
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.77 E-value=0.0057 Score=65.77 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=39.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVP--RADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||...............+. ..|.+++|+|+... ..+. ++...+... ...-+|+||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l-~~~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS-CCCEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCCCcccc
Confidence 69999999987543332222333443 46788999988753 2222 222223222 234567799998754
No 322
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.76 E-value=0.004 Score=70.99 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=40.2
Q ss_pred ccEEEeCCCCChhhhHH----H---HHHHHhc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQ----Q---RLTEEFV-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~----~---~~~~~~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||+|........ . ..++.+. ...+-+++|+|+..+ ......++.++..-....+|+||.|....
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlTKLD~tak 453 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLTKLDGTAK 453 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEECGGGCSC
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEEcCCCccc
Confidence 68999999984322111 1 1111121 235789999998744 33344455555433345679999997544
No 323
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=96.74 E-value=0.0015 Score=76.63 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=105.1
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHH---HHHHHHHHHHHHhhc-CceEE----ecCc-------------HHHHHhCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGK---SVYEAACLLKSVVKD-RALFL----IAER-------------VDIAAAVN 158 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~---~~~~~a~~l~~~~~~-~~~~i----vnd~-------------~dla~~~~ 158 (921)
+..+...+..+.|++.+++=+=+.... ........+..+++. ..+++ |.+. .+-....|
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aG 360 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 360 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcC
Confidence 455667777788997776644221100 111133445566665 77888 4444 55566789
Q ss_pred CCeEEcCCCCCC-----------------HHHHHHhcccCCCCccccCeEEEecC-------------------------
Q 002437 159 ASGVLLSDQGLP-----------------AIVARNTMKDSMSESVVLPLVGRNVQ------------------------- 196 (921)
Q Consensus 159 a~GvHL~~~~l~-----------------~~~~r~~~~~~~~~~~~~~~ig~S~h------------------------- 196 (921)
||-|=++..... +..+...+| .+ .+ .+++.|-
T Consensus 361 ad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g---~~-~i--vv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (555)
T 1jvn_A 361 ADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYG---AQ-AV--VISVDPKRVYVNSQADTKNKVFETEYPGPNGE 434 (555)
T ss_dssp CSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHC---GG-GE--EEEECEEEEEESSGGGCSSCCEECSSCCTTCC
T ss_pred CCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhC---CC-cE--EEEEEccccccccccccccccccccccCCCCC
Confidence 999999854311 222333333 22 22 3555541
Q ss_pred -------------------CHHHHHcccccCCCCEEEeCCCCC----CCCCcc-hhhhhhcCCCCEEEEcCC-CccChHH
Q 002437 197 -------------------TLDAAFNASSSEGADFLVCCFGEG----QKADVI-ENSLFTNVKIPIFIMNAS-PLVDVSK 251 (921)
Q Consensus 197 -------------------~~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~ 251 (921)
..+.++++ ++.|||++++-.+++ ..+.++ .+.+++.+++||+|-||| +++++..
T Consensus 435 ~~~~~~v~~~Gw~~~~~~~~~e~a~~~-~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~ 513 (555)
T 1jvn_A 435 KYCWYQCTIKGGRESRDLGVWELTRAC-EALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEE 513 (555)
T ss_dssp CEEEEEEEETTTTEEEEEEHHHHHHHH-HHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHH
T ss_pred cceeEEEEEecCccCCCCCHHHHHHHH-HHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHH
Confidence 24667777 899999999977733 233343 478888899999999999 6899999
Q ss_pred HHH-cCCcEEEEeeccccc
Q 002437 252 FLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 252 ~~~-~Ga~gva~~~a~~~~ 269 (921)
+.+ +|++||.+.+|....
T Consensus 514 ~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 514 AFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHSCCSEEEESHHHHTT
T ss_pred HHHhcCChHHHHHHHHHcC
Confidence 998 899999887776654
No 324
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.70 E-value=0.0054 Score=69.14 Aligned_cols=69 Identities=25% Similarity=0.163 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||............. ..+-.+|.+++|+|+... ..-....+.....-...-+|+||.|....
T Consensus 182 DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCCEEEEESGGGCSS
T ss_pred CEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCceEEEEeCcCCccc
Confidence 6899999997543221111111 112368999999998743 23333344444333346679999997644
No 325
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=96.63 E-value=0.016 Score=61.22 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=90.7
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceEEecCc-------
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALFLIAER------- 150 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~ivnd~------- 150 (921)
+...+.+....++ +++|-+=-|-.++ ....+.++++++.. ..++++-.+
T Consensus 30 ~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~--~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 30 EGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALT--EKPLFLMTYLNPVLAW 106 (271)
T ss_dssp HHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--CSCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCEEEEecCcHHHHh
Confidence 3555666666566 9998886654322 22334444444432 567777333
Q ss_pred -----HHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHH--HHcccccCCCCEEEeCC--C
Q 002437 151 -----VDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDA--AFNASSSEGADFLVCCF--G 218 (921)
Q Consensus 151 -----~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e--~~~A~~~~gaDyv~~gp--v 218 (921)
++.|.+.|+||+-+.+ +|.... .+.....+-+ .+.+++- +.+.+. ...+ ...|.+|++ +. +
T Consensus 107 g~~~f~~~~~~aG~dGviv~D--l~~ee~~~~~~~~~~~gl~--~i~liap-~s~~eri~~ia~-~~~gfiy~v-s~~G~ 179 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPD--LPPDEDPGLVRLAQEIGLE--TVFLLAP-TSTDARIATVVR-HATGFVYAV-SVTGV 179 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTT--CCGGGCHHHHHHHHHHTCE--EECEECT-TCCHHHHHHHHT-TCCSCEEEE-CC---
T ss_pred hHHHHHHHHHHcCCCEEEecC--CCHHHHHHHHHHHHHcCCc--eEEEeCC-CCCHHHHHHHHH-hCCCCEEEE-ecCcc
Confidence 3346678999999974 443222 1111000011 1123322 233332 2223 457777776 33 2
Q ss_pred CCCC----CCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 219 EGQK----ADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 219 Tk~~----~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|... ..+. ...+++..++||++-|||+ ++++.++ .||+||.|-+|..+..
T Consensus 180 TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~ 236 (271)
T 1ujp_A 180 TGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp ---------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhccc
Confidence 4332 1221 3677777899999999997 9999997 8999999988887764
No 326
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.63 E-value=0.0064 Score=65.39 Aligned_cols=69 Identities=25% Similarity=0.187 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||............... .-.+|.+++|+|+... ....+..+.+...-...-+|+||+|....
T Consensus 182 D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred CEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCEEEEECCCCCcc
Confidence 699999998754432221111111 1258889999998742 33333344443322335579999997654
No 327
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.61 E-value=0.0028 Score=63.86 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=45.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-----KKKVVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~ 504 (921)
+++|||||+..+ ..+...+..+|.+|+|+..+... ..-..+++.+... +.++.+|+||+|..
T Consensus 77 D~viiD~~~~~~------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 77 DFAIVDGAGSLS------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SEEEEECCSSSS------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CEEEEECCCCCC------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 689999998642 23455566799999999988766 5555666666543 35779999999954
No 328
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=96.59 E-value=0.0058 Score=68.00 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=73.8
Q ss_pred CcHHHHHhCCCCeEEcC-CCCCCH---HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC------
Q 002437 149 ERVDIAAAVNASGVLLS-DQGLPA---IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG------ 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~-~~~l~~---~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------ 218 (921)
++++.+.+.|+|-|-|. ....+. ...+.+... -+ . .++.-.+++.++++.+ .+.|||+|.+|+-
T Consensus 147 e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~--~~-i--~Vi~g~V~t~e~A~~a-~~aGAD~I~vG~g~Gs~~~ 220 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK--MN-I--DVIVGNVVTEEATKEL-IENGADGIKVGIGPGSICT 220 (400)
T ss_dssp HHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT--CC-C--EEEEEEECSHHHHHHH-HHTTCSEEEECC-------
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc--CC-C--eEEEeecCCHHHHHHH-HHcCCCEEEEeCCCCcCcc
Confidence 45667777899988763 222332 222332210 01 1 2444578999999999 8999999999731
Q ss_pred CCC--CCCcc----hhhhh---hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 EGQ--KADVI----ENSLF---TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 Tk~--~~g~~----~~~~~---~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. ..+++ +..++||+|-||| ++.++..++++||++|.+-++-+.
T Consensus 221 tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~ 280 (400)
T 3ffs_A 221 TRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 280 (400)
T ss_dssp --CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTT
T ss_pred cccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhc
Confidence 222 12222 23333 3468999999999 589999999999999988655544
No 329
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.54 E-value=0.0018 Score=69.80 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-H-HHHHHhhhcCCeEEEEEeCCCCCCChH---HHHHHHHHHHHHHHHh
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESE-V-VFLRYTQQWKKKVVFVLNKSDLYQNAF---ELEEAISFVKENTMKL 524 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~-~~l~~l~~~~~~vivVlNK~D~~~~~~---~~~~v~~~~~~~~~~~ 524 (921)
++...+.+..+.++|.+++|+|+..|..... . ++|..+...++|.++|+||+|+.++.+ .++.+.+.+ ...
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----~~~ 149 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RNI 149 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH----HhC
Confidence 3333445557899999999999997654443 2 244444567899999999999986632 123332222 221
Q ss_pred hCCCCCeEEEecccch
Q 002437 525 LNIENVTIYPVSARST 540 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~ 540 (921)
+.+++++||..+
T Consensus 150 ----g~~v~~~sa~~~ 161 (307)
T 1t9h_A 150 ----GYDVYLTSSKDQ 161 (307)
T ss_dssp ----TCCEEECCHHHH
T ss_pred ----CCeEEEEecCCC
Confidence 358999999876
No 330
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.45 E-value=0.001 Score=71.82 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
.-.++|+|++|+|||||+|+|.|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 45899999999999999999998653
No 331
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.33 E-value=0.0026 Score=69.94 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
-.++|+|++|+|||||+|+|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 332
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=96.22 E-value=0.0073 Score=69.96 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=73.2
Q ss_pred HHHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC------C
Q 002437 153 IAAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG------E 219 (921)
Q Consensus 153 la~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------T 219 (921)
...+.|+|-|.+....-. +...|... |+. .+++..+.+.++++.| .+.|+|+|.+|.- |
T Consensus 263 aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~----~~~---~vi~g~v~t~e~a~~~-~~aGad~i~vg~g~gsi~~~ 334 (511)
T 3usb_A 263 ALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKY----PSL---NIIAGNVATAEATKAL-IEAGANVVKVGIGPGSICTT 334 (511)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHC----TTS---EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCCH
T ss_pred HHHhhccceEEecccccchhhhhhHHHHHHHhC----CCc---eEEeeeeccHHHHHHH-HHhCCCEEEECCCCcccccc
Confidence 345678999988654421 22334443 331 2566688999999999 8999999998642 1
Q ss_pred C--CCCCcc----h---hhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccc
Q 002437 220 G--QKADVI----E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 220 k--~~~g~~----~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
. ...|.. . .+.++...+||+|-||| ++.++.+++++||++|.+-++..
T Consensus 335 ~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~ 392 (511)
T 3usb_A 335 RVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFA 392 (511)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred ccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHh
Confidence 1 122222 1 23345567999999999 68999999999999998765543
No 333
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.19 E-value=0.0067 Score=70.00 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC
Q 002437 154 AAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG 220 (921)
Q Consensus 154 a~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk 220 (921)
+.+.|+|.|++....-. +...|... |+ . .+++-.+.+.++++.+ .+.|||+|.+| |- |.
T Consensus 239 l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~----p~-~--~Vi~g~v~t~e~a~~l-~~aGaD~I~Vg~g~Gs~~~tr 310 (496)
T 4fxs_A 239 LVEAGVDVLLIDSSHGHSEGVLQRIRETRAAY----PH-L--EIIGGNVATAEGARAL-IEAGVSAVKVGIGPGSICTTR 310 (496)
T ss_dssp HHHTTCSEEEEECSCTTSHHHHHHHHHHHHHC----TT-C--CEEEEEECSHHHHHHH-HHHTCSEEEECSSCCTTBCHH
T ss_pred HHhccCceEEeccccccchHHHHHHHHHHHHC----CC-c--eEEEcccCcHHHHHHH-HHhCCCEEEECCCCCcCcccc
Confidence 33468888888544321 22334443 33 2 3556678999999999 89999999985 43 11
Q ss_pred --CCCCcc----hhhhh---hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 221 --QKADVI----ENSLF---TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 221 --~~~g~~----~~~~~---~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
...|.. ..+++ +...+||+|-||| ++.++.+++++||++|.+-++...
T Consensus 311 ~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~ 368 (496)
T 4fxs_A 311 IVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAG 368 (496)
T ss_dssp HHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhc
Confidence 122222 23333 3458999999999 588999999999999987655444
No 334
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=96.18 E-value=0.0043 Score=66.34 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
...+|... |+. .|.+.|++++|+.+| .+.|+|+|.|-.. .++ .+++.+. -++++.|.|||+++
T Consensus 222 v~~ar~~~----p~~----kIeVEVdtldea~eA-l~aGaD~I~LDn~-----~~~~l~~av~~l~~~v~ieaSGGIt~~ 287 (320)
T 3paj_A 222 ISTAKQLN----PGK----PVEVETETLAELEEA-ISAGADIIMLDNF-----SLEMMREAVKINAGRAALENSGNITLD 287 (320)
T ss_dssp HHHHHHHS----TTS----CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTSSEEEEESSCCHH
T ss_pred HHHHHHhC----CCC----eEEEEECCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEECCCCHH
Confidence 34567665 552 477899999999999 8999999999654 222 2333332 37899999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.++.++|+++|.+
T Consensus 288 ~I~~~a~tGVD~isv 302 (320)
T 3paj_A 288 NLKECAETGVDYISV 302 (320)
T ss_dssp HHHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999954
No 335
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.04 E-value=0.0099 Score=64.10 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
...++++|++|+|||||+|+|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999999 53
No 336
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=95.93 E-value=0.0039 Score=69.34 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=56.3
Q ss_pred HHcccccCCCCEEEeCCCC--CCCC--Ccc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHH
Q 002437 201 AFNASSSEGADFLVCCFGE--GQKA--DVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGV 274 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT--k~~~--g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~ 274 (921)
++.+ ++.|+||+.++.-+ ...+ .+. ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+
T Consensus 261 a~~l-e~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~--P~l 337 (377)
T 2r14_A 261 AGEL-DRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIAN--PDL 337 (377)
T ss_dssp HHHH-HHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC--TTH
T ss_pred HHHH-HHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhC--chH
Confidence 4455 67899999997632 1111 233 467888899999999999999999999998 9999999998865 345
Q ss_pred HHhh
Q 002437 275 LSQM 278 (921)
Q Consensus 275 ~~~~ 278 (921)
.+++
T Consensus 338 ~~k~ 341 (377)
T 2r14_A 338 PERF 341 (377)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.87 E-value=0.0078 Score=64.92 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
-.++++|++|+|||||+|+|.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4789999999999999999999753
No 338
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.83 E-value=0.0079 Score=61.10 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred ccEEEeCCCC-ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-cCCeEEEEEeCCCCCC
Q 002437 436 EMIIVDTPGT-NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~-~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-~~~~vivVlNK~D~~~ 505 (921)
++++||||+. .+. .+...+..+|.+|+++..+......-..+++.+.. .+.++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 6899999985 322 24456678999999998774322233345566655 2567899999999764
No 339
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=95.80 E-value=0.0078 Score=63.75 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=58.5
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhh--cCCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFT--NVKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~--~~~~Pv~aiGGi~~~ 247 (921)
...+|... |+ + -|-+.|+|++|+.+| .+.|+|+|.|-.. .++ .+++.+ .-++++.|.|||+++
T Consensus 200 v~~~r~~~----p~-~---~ieVEvdtlde~~eA-l~aGaD~I~LDn~-----~~~~l~~av~~i~~~v~ieaSGGI~~~ 265 (298)
T 3gnn_A 200 LDAAFALN----AE-V---PVQIEVETLDQLRTA-LAHGARSVLLDNF-----TLDMMRDAVRVTEGRAVLEVSGGVNFD 265 (298)
T ss_dssp HHHHHHHC-------C---CCEEEESSHHHHHHH-HHTTCEEEEEESC-----CHHHHHHHHHHHTTSEEEEEESSCSTT
T ss_pred HHHHHHhC----CC-C---CEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEEcCCCHH
Confidence 34556655 44 2 467889999999999 8999999999654 122 232222 236889999999999
Q ss_pred ChHHHHHcCCcEEEEe
Q 002437 248 DVSKFLKSGASGFVIS 263 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~ 263 (921)
|+.++.++|+++|.+.
T Consensus 266 ~i~~~a~tGVD~isvG 281 (298)
T 3gnn_A 266 TVRAIAETGVDRISIG 281 (298)
T ss_dssp THHHHHHTTCSEEECG
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999999653
No 340
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.75 E-value=0.033 Score=59.45 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=46.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~ 505 (921)
+++|||||+...... +......+|.+|+|+..+......-...++.+...+.+ +-+|+|++|...
T Consensus 203 D~VIIDtpp~~~~~d-----a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVTD-----AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCTH-----HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchHH-----HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 689999999753321 33456789999999998865544445667777776655 458999998654
No 341
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.73 E-value=0.037 Score=59.45 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=46.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~ 504 (921)
+++|||||+...... ..-....+|.+|+|+..+......-...++.+...+.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~d-----~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVSD-----AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCTH-----HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhHH-----HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 689999999753211 2224467999999999887655565667777777666654 889999865
No 342
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.71 E-value=0.012 Score=63.45 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=40.2
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCeEE-EEEeCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKKVV-FVLNKSDL 503 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~vi-vVlNK~D~ 503 (921)
.+++|||||+..... .+...+..+|.+|+|++.+......-..+++.+.. .+.+++ +|+||++.
T Consensus 157 yD~ViiD~p~~~~~~-----~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-----GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG-----GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH-----HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 368999998853211 12345688999999998763322223334555543 334544 89999984
No 343
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.58 E-value=5.7 Score=47.55 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=13.2
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 002437 889 LKLDRLSE----IQDELSNVQEKIQTLQVE 914 (921)
Q Consensus 889 ~~~~~l~~----~~~~l~~~~~~~~~l~~~ 914 (921)
.+.++|+. ..++|+.++.+++.+.+.
T Consensus 662 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 691 (695)
T 2j69_A 662 SEFNRLKNLQEDVIAQLQKIEAAYSNLLAY 691 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555 445555555555555543
No 344
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=95.53 E-value=0.041 Score=63.62 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=54.6
Q ss_pred EecCCHHHHHcccccCCCCEEEeCCC--CC------CCCCcc----h---hhhhhcCCCCEEEEcCC-CccChHHHHHcC
Q 002437 193 RNVQTLDAAFNASSSEGADFLVCCFG--EG------QKADVI----E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSG 256 (921)
Q Consensus 193 ~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk------~~~g~~----~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G 256 (921)
-.+.+.+++..+ .+.|+|+|.+|.- +- ...|.. . ...+...++||+|-||| ++.++.++++.|
T Consensus 284 g~~~t~e~a~~l-~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~G 362 (494)
T 1vrd_A 284 GNVATPEGTEAL-IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAG 362 (494)
T ss_dssp EEECSHHHHHHH-HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred CCcCCHHHHHHH-HHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcC
Confidence 357889999998 8999999999642 10 011211 1 23334468999999999 789999999999
Q ss_pred CcEEEEeeccc
Q 002437 257 ASGFVISLEDL 267 (921)
Q Consensus 257 a~gva~~~a~~ 267 (921)
|++|.+.++.+
T Consensus 363 Ad~V~iGr~~l 373 (494)
T 1vrd_A 363 AESVMVGSIFA 373 (494)
T ss_dssp CSEEEESHHHH
T ss_pred CCEEEECHHHh
Confidence 99998766654
No 345
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=95.39 E-value=0.018 Score=59.14 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHHH-hcCCcEEE--EeCCCCC-HHHHHHHHHHHHHHhhc-CceEEecCc-----------HHHHHh-C-CCCeEE
Q 002437 102 LDLIDEAV-AKFVGIVV--LNGGEAS-GKSVYEAACLLKSVVKD-RALFLIAER-----------VDIAAA-V-NASGVL 163 (921)
Q Consensus 102 ~~~~~~~l-~~g~~~vq--lR~k~~~-~~~~~~~a~~l~~~~~~-~~~~ivnd~-----------~dla~~-~-~a~GvH 163 (921)
.+.+.+++ +.|..+|- +|.-+.. .... ..+.+..+. +..++-|.. ..+|.+ + +.+=|-
T Consensus 32 ~~~~~~a~~asg~e~vtva~rR~~~~~~~~~----~~~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iK 107 (265)
T 1wv2_A 32 LDETRRAIEASGAEIVTVAVRRTNIGQNPDE----PNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVK 107 (265)
T ss_dssp HHHHHHHHHHSCCSEEEEEGGGCCC-----------------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEeeccccCCCc----chHHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 35566665 67766644 4443432 1111 233444445 777887752 235666 3 333333
Q ss_pred c---CCCCC--C-----HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe--CCC-CCCCCCc---c-
Q 002437 164 L---SDQGL--P-----AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFG-EGQKADV---I- 226 (921)
Q Consensus 164 L---~~~~l--~-----~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~--gpv-Tk~~~g~---~- 226 (921)
| ++..+ | ...++.+. .++.. .+-+.+-|+..+++. ...|+|++.- +|+ |. .|+ .
T Consensus 108 lEv~~d~~~llpD~~~tv~aa~~L~----~~Gf~--Vlpy~~dd~~~akrl-~~~G~~aVmPlg~pIGsG--~Gi~~~~l 178 (265)
T 1wv2_A 108 LEVLADQKTLFPNVVETLKAAEQLV----KDGFD--VMVYTSDDPIIARQL-AEIGCIAVMPLAGLIGSG--LGICNPYN 178 (265)
T ss_dssp ECCBSCTTTCCBCHHHHHHHHHHHH----TTTCE--EEEEECSCHHHHHHH-HHSCCSEEEECSSSTTCC--CCCSCHHH
T ss_pred EEeecCccccCcCHHHHHHHHHHHH----HCCCE--EEEEeCCCHHHHHHH-HHhCCCEEEeCCccCCCC--CCcCCHHH
Confidence 3 22221 1 23445554 23210 223345689998888 7999999977 234 42 233 2
Q ss_pred hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++..++||++-|||. ++++..+++.||+||.|-+|..+.
T Consensus 179 I~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a 222 (265)
T 1wv2_A 179 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA 222 (265)
T ss_dssp HHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 4788888899999999995 899999999999999998887663
No 346
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.31 E-value=0.12 Score=56.87 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=40.0
Q ss_pred ccEEEeCCCCChhhhH--------HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQR--------QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--------~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+..++||.|....... ...+.+..+...+-+++|+|+....... ..+..+.+.....++++||.|....
T Consensus 242 d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g~t~iiiThlD~~~~ 318 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVGITGLILTKLDGSAR 318 (359)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTCCCEEEEESCTTCSC
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcCCeEEEEecCccccc
Confidence 4689999998543211 1122333446788889999965433221 2233444333345778999987644
No 347
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.29 E-value=0.048 Score=59.90 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.6
Q ss_pred HhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEec
Q 002437 458 EFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536 (921)
Q Consensus 458 ~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vS 536 (921)
..+.++|.+++|......++.... ++|......++|+++|+||+|+.++ +..+.+... ...+ ...+.+++++|
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~-~~~~~~~~~-~~~y----~~~G~~v~~~S 199 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD-EGMDFVNEQ-MDIY----RNIGYRVLMVS 199 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH-HHHHHHHHH-HHHH----HTTTCCEEECB
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc-hhHHHHHHH-HHHH----HhCCCcEEEEe
Confidence 346899999988665433343322 2444445678899999999999854 221112121 1222 22346799999
Q ss_pred ccch
Q 002437 537 ARST 540 (921)
Q Consensus 537 A~~~ 540 (921)
+..+
T Consensus 200 a~~~ 203 (358)
T 2rcn_A 200 SHTQ 203 (358)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9876
No 348
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=95.28 E-value=0.018 Score=63.05 Aligned_cols=77 Identities=21% Similarity=0.121 Sum_probs=58.4
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeCCC------CCC----C-CC--cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCCFG------EGQ----K-AD--VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS 255 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~gpv------Tk~----~-~g--~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~ 255 (921)
+.-.+.+.++++.| .+.|||+|.+|-- |.+ + +| +. ..++++..++||++-|||. ..++.+++..
T Consensus 153 i~G~v~s~e~A~~a-~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalal 231 (336)
T 1ypf_A 153 IAGNVGTPEAVREL-ENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRF 231 (336)
T ss_dssp EEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHT
T ss_pred EECCcCCHHHHHHH-HHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc
Confidence 33346789999999 8999999999521 111 1 11 22 3667777799999999994 8899999999
Q ss_pred CCcEEEEeecccc
Q 002437 256 GASGFVISLEDLS 268 (921)
Q Consensus 256 Ga~gva~~~a~~~ 268 (921)
||++|.+-++.+.
T Consensus 232 GAdaV~iGr~~l~ 244 (336)
T 1ypf_A 232 GATMVMIGSLFAG 244 (336)
T ss_dssp TCSEEEESGGGTT
T ss_pred CCCEEEeChhhhc
Confidence 9999998877773
No 349
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=95.26 E-value=0.012 Score=60.40 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=99.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHH----HHHHHHHhhcCceEEe----cCc----HHHH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEA----ACLLKSVVKDRALFLI----AER----VDIA 154 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~----a~~l~~~~~~~~~~iv----nd~----~dla 154 (921)
+|++-.|.. ...+.++.+++ +...+.++.+ ...-++.. .+.|++.+. +..+++ +|- ...+
T Consensus 7 ~livAlD~~-~~~~a~~~~~~-~~~~~~~ikv-----g~~lf~~~G~~~v~~l~~~~p-~~~iflDlKl~Dip~t~~~~~ 78 (221)
T 3exr_A 7 NLQVALDHS-NLKGAITAAVS-VGNEVDVIEA-----GTVCLLQVGSELVEVLRSLFP-DKIIVADTKCADAGGTVAKNN 78 (221)
T ss_dssp EEEEEECCS-SHHHHHHHHHH-HGGGCSEEEE-----CHHHHHHHCTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCC-CHHHHHHHHHh-hCCCceEEEE-----CHHHHHhcCHHHHHHHHHhCC-CCcEEEEEEeeccHHHHHHHH
Confidence 555555542 12244555554 3555778777 23333333 444444321 334443 333 3456
Q ss_pred HhCCCCe--EEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCC---HHHHHcccccCCCCEEEeCCC--CCCCCCcc-
Q 002437 155 AAVNASG--VLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQT---LDAAFNASSSEGADFLVCCFG--EGQKADVI- 226 (921)
Q Consensus 155 ~~~~a~G--vHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~---~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~- 226 (921)
.++|+|. ||.....-.+..+++.....+...+ ++|+++.+ .+++... ...|+||+++.+- ++ ..|..
T Consensus 79 ~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~---~~~Vt~lts~~~~~~~~~-~~~~~~~~v~~~a~~~~-~~Gvv~ 153 (221)
T 3exr_A 79 AVRGADWMTCICSATIPTMKAARKAIEDINPDKG---EIQVELYGDWTYDQAQQW-LDAGISQAIYHQSRDAL-LAGETW 153 (221)
T ss_dssp HTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTC---EEEEECCSSCCHHHHHHH-HHTTCCEEEEECCHHHH-HHTCCC
T ss_pred HHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcc---eEEEEEcCCCCHHHHHHH-HcCCHHHHHHHHHHhcC-CCcccc
Confidence 6789999 8986654334444443310001112 67877743 6666666 5679999999775 22 12221
Q ss_pred ----hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ----ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ----~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++. .++|+.+.|||+++|+..+.++||+.+++-++..+.
T Consensus 154 s~~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a 202 (221)
T 3exr_A 154 GEKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEA 202 (221)
T ss_dssp CHHHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTS
T ss_pred CHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 2334333 368899999999999999999999999887766543
No 350
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=95.24 E-value=0.024 Score=59.84 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
+..+|... |. + -|-+-|.|++|+.+| .+.|+|.|.|--. .++ .+++.+. -.+++.|.|||+++
T Consensus 198 v~~ar~~~----p~-~---kIeVEv~tl~e~~eA-l~aGaDiImLDn~-----s~~~l~~av~~~~~~v~leaSGGIt~~ 263 (300)
T 3l0g_A 198 IQRLRKNL----KN-E---YIAIECDNISQVEES-LSNNVDMILLDNM-----SISEIKKAVDIVNGKSVLEVSGCVNIR 263 (300)
T ss_dssp HHHHHHHS----SS-C---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTSSEEEEESSCCTT
T ss_pred HHHHHHhC----CC-C---CEEEEECCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHhhcCceEEEEECCCCHH
Confidence 34566654 55 2 478899999999999 8999999999543 222 2222221 26889999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.+..++|++.|.+
T Consensus 264 ~i~~~A~tGVD~Isv 278 (300)
T 3l0g_A 264 NVRNIALTGVDYISI 278 (300)
T ss_dssp THHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999999954
No 351
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.19 E-value=0.076 Score=59.37 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=56.8
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCC---CC--CCCCcc----hhhhhhc-------CC---CCEEEEcCC-CccCh
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFG---EG--QKADVI----ENSLFTN-------VK---IPIFIMNAS-PLVDV 249 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpv---Tk--~~~g~~----~~~~~~~-------~~---~Pv~aiGGi-~~~~~ 249 (921)
++.--+.+.+++..| .+.|||+|.+|-- +. ...|.. ..++.+. .. +||+|-||| +..++
T Consensus 214 vi~ggi~t~e~a~~~-~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv 292 (393)
T 2qr6_A 214 VIAGGVNDYTTALHM-MRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDV 292 (393)
T ss_dssp EEEECCCSHHHHHHH-HTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHH
T ss_pred EEECCcCCHHHHHHH-HHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHH
Confidence 343356789999999 8999999999752 11 122333 2333333 33 999999999 58899
Q ss_pred HHHHHcCCcEEEEeeccccc
Q 002437 250 SKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++.+||++|.+.++.+..
T Consensus 293 ~kalalGA~~V~iG~~~l~~ 312 (393)
T 2qr6_A 293 VKAIACGADAVVLGSPLARA 312 (393)
T ss_dssp HHHHHHTCSEEEECGGGGGS
T ss_pred HHHHHcCCCEEEECHHHHcC
Confidence 99999999999887776543
No 352
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=95.16 E-value=0.07 Score=58.61 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=50.9
Q ss_pred HHcccccCCCCEEEeCC--C--C--CC-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeecccc
Q 002437 201 AFNASSSEGADFLVCCF--G--E--GQ-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gp--v--T--k~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
++.. .+.|+||+-++- . + .+ .++ +. ...+++.+++||++.||| +++++.++++.| |+.|++.++.+.
T Consensus 245 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 245 ARRL-KELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHH-HHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHH-HHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 4444 578999999873 2 1 11 122 22 367777789999999999 689999999999 999999998875
Q ss_pred c
Q 002437 269 L 269 (921)
Q Consensus 269 ~ 269 (921)
.
T Consensus 324 n 324 (349)
T 3hgj_A 324 D 324 (349)
T ss_dssp C
T ss_pred C
Confidence 4
No 353
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=95.15 E-value=0.024 Score=58.40 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=75.9
Q ss_pred HHHHHhCCCCeEEcCCCCCCHHHHHHh------cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC-CC-C
Q 002437 151 VDIAAAVNASGVLLSDQGLPAIVARNT------MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE-GQ-K 222 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~~l~~~~~r~~------~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT-k~-~ 222 (921)
+.-|..+|||.|-|=-.-++....+.+ +| -+ +=+-+||.+|+.+| ...|++.|++-.-. ++ .
T Consensus 119 I~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lG---l~------~LvEVh~~~El~rA-l~~~a~iIGINNRnL~tf~ 188 (258)
T 4a29_A 119 IDDAYNLGADTVLLIVKILTERELESLLEYARSYG---ME------PLILINDENDLDIA-LRIGARFIGIMSRDFETGE 188 (258)
T ss_dssp HHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTT---CC------CEEEESSHHHHHHH-HHTTCSEEEECSBCTTTCC
T ss_pred HHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHh---HH------HHHhcchHHHHHHH-hcCCCcEEEEeCCCccccc
Confidence 445667899999886666664443332 23 22 22478999999999 89999999986541 11 1
Q ss_pred CCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 223 ADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 223 ~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..+. ...++..+ ++++++-+|| +++++..+.++|++||-|-.+.|+.
T Consensus 189 vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~ 239 (258)
T 4a29_A 189 INKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRN 239 (258)
T ss_dssp BCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred cCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 2222 24455544 4678888999 5889999999999999887777774
No 354
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=95.13 E-value=0.015 Score=65.58 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=82.2
Q ss_pred HHHHhCCCCeEEcCCCCCCHHHHHHhcccCC-CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-h
Q 002437 152 DIAAAVNASGVLLSDQGLPAIVARNTMKDSM-SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-E 227 (921)
Q Consensus 152 dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~-~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~ 227 (921)
.-|..+|||+|-|--..++....+.+..... -+ . .+=+-|||.+|+.+| ...|+|+|++-+- +....++. .
T Consensus 124 ~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lg-m---~~LvEvh~~eE~~~A-~~lga~iIGinnr~L~t~~~dl~~~ 198 (452)
T 1pii_A 124 YLARYYQADACLLMLSVLDDDQYRQLAAVAHSLE-M---GVLTEVSNEEEQERA-IALGAKVVGINNRDLRDLSIDLNRT 198 (452)
T ss_dssp HHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTT-C---EEEEEECSHHHHHHH-HHTTCSEEEEESEETTTTEECTHHH
T ss_pred HHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcC-C---eEEEEeCCHHHHHHH-HHCCCCEEEEeCCCCCCCCCCHHHH
Confidence 3456789999998777776443333321000 01 1 344578999999999 8999999998765 22223343 3
Q ss_pred hhhhhcC--CCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccchH-HHHHhh
Q 002437 228 NSLFTNV--KIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLFND-GVLSQM 278 (921)
Q Consensus 228 ~~~~~~~--~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~~~-~~~~~~ 278 (921)
..+...+ ++++++-|||+ ++++..+.++ ++||.|-.+.|+.-.. ..++.+
T Consensus 199 ~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l 252 (452)
T 1pii_A 199 RELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRV 252 (452)
T ss_dssp HHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHH
Confidence 4555544 57899999995 8999999999 9999998888886432 333444
No 355
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.12 E-value=0.0046 Score=64.25 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=40.6
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSD 502 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D 502 (921)
.+++|||||+..+. .+...+..+|.+|+|++.+......-..+++.+...+ ..+.+|+||.+
T Consensus 132 yD~viiD~pp~~~~------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH------LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT------CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH------HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 36899999875322 2445668899999999876322222223444444444 46889999998
No 356
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=95.02 E-value=0.021 Score=58.21 Aligned_cols=170 Identities=15% Similarity=0.023 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHH----HHHHHHHhhcCceEEe--------cCcHHHH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEA----ACLLKSVVKDRALFLI--------AERVDIA 154 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~----a~~l~~~~~~~~~~iv--------nd~~dla 154 (921)
++++-.|... ..+.++.++++ ...+.++-. .+.-++.. .+.+++.+. +..+++ |...+.+
T Consensus 5 ~~ilalD~~~-~~~~~~~~~~~-~~~v~~~kv-----~~~~f~~~G~~~i~~l~~~~p-~~~v~lD~kl~dip~t~~~~~ 76 (216)
T 1q6o_A 5 MLQVALDNQT-MDSAYETTRLI-AEEVDIIEV-----GTILCVGEGVRAVRDLKALYP-HKIVLADAKIADAGKILSRMC 76 (216)
T ss_dssp EEEEEECCSS-HHHHHHHHHHH-GGGCSEEEE-----CHHHHHHHCTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHH
T ss_pred CeEEEECCCC-HHHHHHHHHHh-cccCCEEEE-----CHHHHHHhCHHHHHHHHHhCC-CCeEEEEEEecccHHHHHHHH
Confidence 4566666421 22444555544 234565532 33334433 344444321 344442 3335567
Q ss_pred HhCCCCeE--EcCCCCCCHHHHHHhcccCCCCccccCeE-EEecCCHHHHHcccccCCCCEEEeCCC--CC-CC-CC-cc
Q 002437 155 AAVNASGV--LLSDQGLPAIVARNTMKDSMSESVVLPLV-GRNVQTLDAAFNASSSEGADFLVCCFG--EG-QK-AD-VI 226 (921)
Q Consensus 155 ~~~~a~Gv--HL~~~~l~~~~~r~~~~~~~~~~~~~~~i-g~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk-~~-~g-~~ 226 (921)
.++|||.| |.....-....+.+.....+.. ..+-++ +++ ...+... ...|.+++++.-. |. +. .| +.
T Consensus 77 ~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~-~~~~ll~~~t---~~~~~~l-~~~~~~~~vl~~a~~~~~~G~~g~~~ 151 (216)
T 1q6o_A 77 FEANADWVTVICCADINTAKGALDVAKEFNGD-VQIELTGYWT---WEQAQQW-RDAGIGQVVYHRSRDAQAAGVAWGEA 151 (216)
T ss_dssp HHTTCSEEEEETTSCHHHHHHHHHHHHHTTCE-EEEEECSCCC---HHHHHHH-HHTTCCEEEEECCHHHHHTTCCCCHH
T ss_pred HhCCCCEEEEeccCCHHHHHHHHHHHHHcCCC-ceeeeeeCCC---hhhHHHH-HhcCcHHHHHHHHHHHHhcCCCCCHH
Confidence 78999976 7654422122222222100011 000022 332 3333333 4557888887432 22 11 22 33
Q ss_pred -hhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++.. ++|+++.|||+++++.++.++||++|++.++..+.
T Consensus 152 ~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a 197 (216)
T 1q6o_A 152 DITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDA 197 (216)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred HHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCC
Confidence 34444443 68899999999999999999999999988887653
No 357
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=94.78 E-value=0.024 Score=62.85 Aligned_cols=73 Identities=26% Similarity=0.278 Sum_probs=55.4
Q ss_pred ecCCHHHHHcccccCCCCEEEeCCC-CCCC----CCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEee
Q 002437 194 NVQTLDAAFNASSSEGADFLVCCFG-EGQK----ADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISL 264 (921)
Q Consensus 194 S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~----~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~ 264 (921)
-+++.+++..| .+.|+|+|.+|.- +... +.+. ..++.+.+ ++||++-||| +.+++.+++++||++|.+-+
T Consensus 232 ~~~~~e~a~~a-~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr 310 (370)
T 1gox_A 232 GVITAEDARLA-VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGR 310 (370)
T ss_dssp CCCSHHHHHHH-HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred ecCCHHHHHHH-HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecH
Confidence 45889999999 8999999999864 2211 1111 34555655 7999999999 56799999999999998766
Q ss_pred ccc
Q 002437 265 EDL 267 (921)
Q Consensus 265 a~~ 267 (921)
+.+
T Consensus 311 ~~l 313 (370)
T 1gox_A 311 PVV 313 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 358
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.52 E-value=0.1 Score=54.66 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=43.0
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDL 503 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~ 503 (921)
.+++|||||+..+ ..+...+..+|.+|+|+..+......-..+++.+... +.++.+|+|+++.
T Consensus 145 yD~viiD~pp~~~------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLD------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCS------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCcc------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 3689999998532 2355666779999999998754333333455666554 3478899999953
No 359
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=94.29 E-value=0.035 Score=57.62 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHH----------HHHHHHhhc---CceEEec-
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAA----------CLLKSVVKD---RALFLIA- 148 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a----------~~l~~~~~~---~~~~ivn- 148 (921)
.-|+.... .+.+...+.+....++|++++-|=-|-.+ .....+.. ..+.++.+. ..++++=
T Consensus 17 i~yitaG~-P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~ 95 (252)
T 3tha_A 17 VAYTVLGY-PNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMV 95 (252)
T ss_dssp EEEEETTS-SCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEEC
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 34555443 22346677777777899999988766443 22221111 222233332 2577662
Q ss_pred -----------CcHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEE
Q 002437 149 -----------ERVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLV 214 (921)
Q Consensus 149 -----------d~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~ 214 (921)
...+-|.+.|+||+-+++ +|..+. ++.....+-+ . +.+ -..+.+.+.+++. .+.+-+|+-
T Consensus 96 Y~N~i~~~G~e~F~~~~~~aGvdG~IipD--LP~eE~~~~~~~~~~~Gl~-~-I~l-vaP~t~~eRi~~i-a~~a~gFiY 169 (252)
T 3tha_A 96 YYNLIFSYGLEKFVKKAKSLGICALIVPE--LSFEESDDLIKECERYNIA-L-ITL-VSVTTPKERVKKL-VKHAKGFIY 169 (252)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTEEEEECTT--CCGGGCHHHHHHHHHTTCE-E-CEE-EETTSCHHHHHHH-HTTCCSCEE
T ss_pred ccCHHHHhhHHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHHcCCe-E-EEE-eCCCCcHHHHHHH-HHhCCCeEE
Confidence 245567788999999965 564332 2221100012 1 112 2223345666655 455556654
Q ss_pred eCC---CCCCCCC----cc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccc
Q 002437 215 CCF---GEGQKAD----VI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 215 ~gp---vTk~~~g----~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+-+ +|....+ +. ...+++..++||++-+|| +++++..+.+ +|+||.|-+|.++..
T Consensus 170 ~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i 234 (252)
T 3tha_A 170 LLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCF 234 (252)
T ss_dssp EECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHT
T ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHH
Confidence 432 3443222 22 366777789999999999 7888888876 699999888877654
No 360
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=94.15 E-value=0.032 Score=60.26 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=54.3
Q ss_pred cCCHHH-HHcccccCCCCEEEeCC--------C-CCCC---------CCc-------c-hhhhhhcCCCCEEEEcCC-Cc
Q 002437 195 VQTLDA-AFNASSSEGADFLVCCF--------G-EGQK---------ADV-------I-ENSLFTNVKIPIFIMNAS-PL 246 (921)
Q Consensus 195 ~h~~~e-~~~A~~~~gaDyv~~gp--------v-Tk~~---------~g~-------~-~~~~~~~~~~Pv~aiGGi-~~ 246 (921)
+.+..+ +..+ .+.|+|||.+.. . |+.+ .|. . ..++++.+++||++.||| ++
T Consensus 175 ~~~~~~~a~~l-~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~ 253 (311)
T 1ep3_A 175 VTDIVPIAKAV-EAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANA 253 (311)
T ss_dssp SSCSHHHHHHH-HHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSH
T ss_pred hHHHHHHHHHH-HHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCH
Confidence 345555 6666 789999999943 2 2211 111 2 246667779999999999 79
Q ss_pred cChHHHHHcCCcEEEEeeccccc
Q 002437 247 VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++.+++++||++|.+.++.+..
T Consensus 254 ~d~~~~l~~GAd~V~vg~~~l~~ 276 (311)
T 1ep3_A 254 QDVLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp HHHHHHHHHTCSEEEECTHHHHC
T ss_pred HHHHHHHHcCCCEEEECHHHHcC
Confidence 99999999999999998887663
No 361
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=94.09 E-value=0.048 Score=60.31 Aligned_cols=70 Identities=20% Similarity=0.093 Sum_probs=53.2
Q ss_pred cCCHHHHHcccccCCCCEEEeCCCC--CCCCCcc----hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeec
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFGE--GQKADVI----ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~----~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a 265 (921)
+++.++++.| .+.|+|+|.++.-. ....|.. ..++.+.+ ++||++-||| +..++.+++..||++|.+.++
T Consensus 237 v~~~e~a~~a-~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~ 315 (368)
T 2nli_A 237 IQHPEDADMA-IKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRP 315 (368)
T ss_dssp ECSHHHHHHH-HHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred CCCHHHHHHH-HHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 5899999999 89999999997531 1122222 34555555 6999999999 477899999999999977653
No 362
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.05 E-value=0.022 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++++++|++|+|||||++.|.|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 363
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.94 E-value=0.019 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++|+|++|||||||++.|.|.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 364
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.94 E-value=0.033 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+|+|++|||||||++.|.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 365
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.88 E-value=0.04 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+++|++|||||||++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 445678999999999999999999986
No 366
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=93.86 E-value=0.055 Score=59.02 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=53.8
Q ss_pred cCCHHHHHcccccCCCCEEEeCCC--CCCCCC---cc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeec
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFG--EGQKAD---VI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g---~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a 265 (921)
+.+.+++..| .+.|+|+|.++-- +....+ +. +.++++.+ ++||++-||| +..++.+++..||++|.+-++
T Consensus 225 v~~~e~A~~a-~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~ 303 (352)
T 3sgz_A 225 ILTKEDAELA-MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRP 303 (352)
T ss_dssp ECSHHHHHHH-HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred cCcHHHHHHH-HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 4789999999 8999999999643 221112 22 34555555 7999999999 578899999999999987665
Q ss_pred cc
Q 002437 266 DL 267 (921)
Q Consensus 266 ~~ 267 (921)
.+
T Consensus 304 ~l 305 (352)
T 3sgz_A 304 IL 305 (352)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 367
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=93.84 E-value=0.062 Score=58.97 Aligned_cols=77 Identities=18% Similarity=0.049 Sum_probs=54.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC--CCC----C--CCCCcc----h---hhhhhcCCCCEEEEcCCC-ccChHHHHH
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC--FGE----G--QKADVI----E---NSLFTNVKIPIFIMNASP-LVDVSKFLK 254 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g--pvT----k--~~~g~~----~---~~~~~~~~~Pv~aiGGi~-~~~~~~~~~ 254 (921)
+...+-+.++++.| .+.|+|+|.+| |-+ . ...+.. . ...+...++||+|-|||. +.++.++++
T Consensus 165 i~g~v~t~e~A~~a-~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAla 243 (351)
T 2c6q_A 165 MAGNVVTGEMVEEL-ILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFG 243 (351)
T ss_dssp EEEEECSHHHHHHH-HHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH
T ss_pred EEEeCCCHHHHHHH-HHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHH
Confidence 33357789999999 89999999876 211 1 011211 1 233444589999999995 889999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
.||++|.+-++.+.
T Consensus 244 lGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 244 AGADFVMLGGMLAG 257 (351)
T ss_dssp TTCSEEEESTTTTT
T ss_pred cCCCceeccHHHhc
Confidence 99999987665543
No 368
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=93.81 E-value=0.052 Score=58.87 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHHHcccccCCCCEEEeCCCCCC-----CCCcc-hhhhhhcCCCCEEEEcCC-CccChHHHHH-cCCcEEEEeeccccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQ-----KADVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~-----~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~-~Ga~gva~~~a~~~~ 269 (921)
+.+..+ .+.|+||+.+.+.|.. ++... ...+++ ++||++-||| +++++.++++ .||++|.+.++.+..
T Consensus 144 ~~a~~l-~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~ 219 (318)
T 1vhn_A 144 EIYRIL-VEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR 219 (318)
T ss_dssp HHHHHH-HHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred HHHHHH-HHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 556666 7899999999766432 11222 345555 8999999999 7899999998 799999999988764
No 369
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=93.80 E-value=0.037 Score=57.66 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHcccccCCCCEEEeCCCCC--CCCC--cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEG--QKAD--VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk--~~~g--~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+-++.+ .+.|+|++.+...+. ...+ .. ...+++.+++||++-|||. ++++..++++||++|.+.++.+.
T Consensus 39 ~~a~~~-~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 39 DWVVEV-EKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHHHHH-HHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHHHHH-HHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 445555 788999998865522 2222 23 4788888999999999995 67899999999999988777764
No 370
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=93.70 E-value=0.038 Score=60.75 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=52.2
Q ss_pred HHHHcccccCCCCEEEeCCCCCC------------CCCcc-hhhhhhcC-CCCEEEEcCC-CccChHHHHHcCCcEEEEe
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQ------------KADVI-ENSLFTNV-KIPIFIMNAS-PLVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~------------~~g~~-~~~~~~~~-~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~ 263 (921)
+.+..+ .+.|+||+.+.+.|.. +.... ...+++.+ ++||++-||| +++++.++++ ||+||.+.
T Consensus 148 ~~a~~l-~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 148 QSVEAM-AEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HHHHHH-HHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred HHHHHH-HHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 335566 6889999999875321 11122 36777777 8999999999 6899999998 99999998
Q ss_pred eccccc
Q 002437 264 LEDLSL 269 (921)
Q Consensus 264 ~a~~~~ 269 (921)
++.+..
T Consensus 226 Ra~l~~ 231 (350)
T 3b0p_A 226 RAVYED 231 (350)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 888764
No 371
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.68 E-value=0.026 Score=56.63 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
...|+++|++|+|||||++.|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578899999999999999999753
No 372
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.029 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999875
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.63 E-value=0.056 Score=58.50 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++.|+|+|.+|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998653
No 374
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.49 E-value=0.064 Score=57.36 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh------cCCeE-EEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ------WKKKV-VFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~------~~~~v-ivVlNK~D~~ 504 (921)
+++|||||+..+.. +...+..+|.+|+|+..+......-..+++.+.. .+.++ -+|+|+.|..
T Consensus 156 D~IiiD~pp~~~~~------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 156 DLIIIDTVPTPSVY------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp SEEEEEECSSCSHH------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CEEEEECCCCccHH------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 68999999864321 2233345999999998875443333344444433 24564 4899999965
No 375
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.34 E-value=0.037 Score=55.86 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455689999999999999999999853
No 376
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.22 E-value=0.041 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....++++|++|||||||++.|.|.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457999999999999999999986
No 377
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=93.22 E-value=0.14 Score=55.81 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred CCHHHHHcccccCCCCEEEeCCC--C--------CC----------CCCcc----hhhhhhcC-CCCEEEEcCC-CccCh
Q 002437 196 QTLDAAFNASSSEGADFLVCCFG--E--------GQ----------KADVI----ENSLFTNV-KIPIFIMNAS-PLVDV 249 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpv--T--------k~----------~~g~~----~~~~~~~~-~~Pv~aiGGi-~~~~~ 249 (921)
.+.+++..+ .+.|+|+|.++-- | .. ..|+. ..++++.+ ++||++-||| ++.++
T Consensus 193 ~~~e~a~~~-~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~ 271 (332)
T 1vcf_A 193 LSREAALAL-RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDG 271 (332)
T ss_dssp CCHHHHHHH-TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHH
T ss_pred CCHHHHHHH-HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHH
Confidence 688999999 8999999998531 2 21 12332 24566666 7999999999 57889
Q ss_pred HHHHHcCCcEEEEeeccc
Q 002437 250 SKFLKSGASGFVISLEDL 267 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~ 267 (921)
.+++..||++|.+.++.+
T Consensus 272 ~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 272 AKALALGADLLAVARPLL 289 (332)
T ss_dssp HHHHHHTCSEEEECGGGH
T ss_pred HHHHHhCCChHhhhHHHH
Confidence 999999999998877655
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.08 E-value=0.045 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999999853
No 379
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=93.07 E-value=0.064 Score=59.58 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred cCCHHHHHcccccCCCCEEEeCCC--CCC---CCCcc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccc
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFG--EGQ---KADVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpv--Tk~---~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
+-+.+++..| .+.|+|+|.+|-- +.. .+.+. ..++++.+++||++-||| +..++.+++.+||++|.+.++.+
T Consensus 233 v~t~e~a~~a-~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l 311 (380)
T 1p4c_A 233 LLSAEDADRC-IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL 311 (380)
T ss_dssp ECCHHHHHHH-HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred cCcHHHHHHH-HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHH
Confidence 4689999999 8999999999643 211 12232 466777778899999999 46699999999999998776654
No 380
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.02 E-value=0.12 Score=54.39 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=63.9
Q ss_pred cEEEeCCCCChh--hhHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHH-HHHHhhh----cCCeEEEEEeC-CCCCC
Q 002437 437 MIIVDTPGTNVI--LQRQQRLTEEFVPRADLVLFVISADRPL---TESEVV-FLRYTQQ----WKKKVVFVLNK-SDLYQ 505 (921)
Q Consensus 437 l~lvDTPG~~~~--~~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~-~l~~l~~----~~~~vivVlNK-~D~~~ 505 (921)
+....+||-+.. .......++.|+..+|++|||+|+++.. ...++. +...+.+ .+.|++|+.|| -|+..
T Consensus 183 ~f~~~~~~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 183 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp --------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred hccccCCCCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 444555652211 1334577999999999999999997653 233332 2122221 46799999997 47754
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.- ...++.+.+. +..+ . ....|.++||.+| .|+.+=.+++.+.+.
T Consensus 263 Am-s~~EI~e~L~--L~~l-~-r~W~Iq~csA~tG---------------------------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 263 RM-PCFYLAHELH--LNLL-N-HPWLVQDTEAETL---------------------------TGFLNGIEWILEEVE 307 (312)
T ss_dssp BC-CHHHHHHHTT--GGGG-C-SCEEEEEEETTTC---------------------------TTHHHHHHHHHHHSC
T ss_pred CC-CHHHHHHHcC--CccC-C-CcEEEEecccCCC---------------------------cCHHHHHHHHHHHHH
Confidence 31 1233333322 1222 2 4577999999998 677777777777665
No 381
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=92.98 E-value=0.048 Score=59.67 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHcccccCCCCEEEeCCCCC-----C-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeeccccc
Q 002437 201 AFNASSSEGADFLVCCFGEG-----Q-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk-----~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++.. .+.|+||+-++.-|. + .++ +. ...+++.+++||++.||| +++++.++++.| |++|++.++.+..
T Consensus 235 a~~l-~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~n 313 (338)
T 1z41_A 235 AKWM-KEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 313 (338)
T ss_dssp HHHH-HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHH-HHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhC
Confidence 3344 678999999876421 1 222 22 367778889999999999 799999999999 9999999988865
Q ss_pred chHHHHHhh
Q 002437 270 FNDGVLSQM 278 (921)
Q Consensus 270 ~~~~~~~~~ 278 (921)
+++.+++
T Consensus 314 --Pdl~~ki 320 (338)
T 1z41_A 314 --PFFARTA 320 (338)
T ss_dssp --TTHHHHH
T ss_pred --chHHHHH
Confidence 4455554
No 382
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.93 E-value=0.039 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++|+|++|||||||++.|.|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999843
No 383
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.92 E-value=0.05 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 384
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.87 E-value=0.047 Score=55.77 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3455689999999999999999999863
No 385
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.83 E-value=0.053 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....|+++|+.|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 386
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=92.76 E-value=0.092 Score=58.45 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCHHHHHcccccCCCCEEEeCCCC--CCCCCcc----hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecc
Q 002437 196 QTLDAAFNASSSEGADFLVCCFGE--GQKADVI----ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~----~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
-+.+++..| .+.|+|+|.++.-. ....|+. ..++++.+ ++||++-||| +..++.+++..||++|.+.++.
T Consensus 261 ~~~e~A~~a-~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 261 LRGDDAREA-VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp CCHHHHHHH-HHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCHHHHHHH-HHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 579999999 89999999997531 1122222 24555544 5999999999 4788999999999999876644
Q ss_pred c
Q 002437 267 L 267 (921)
Q Consensus 267 ~ 267 (921)
+
T Consensus 340 l 340 (392)
T 2nzl_A 340 V 340 (392)
T ss_dssp H
T ss_pred H
Confidence 3
No 387
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.75 E-value=0.04 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.++++|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999753
No 388
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=92.61 E-value=0.66 Score=52.76 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=54.1
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CC----CCCC--CCcc-h------hhhhhcCCCCEEEEcCCC-ccChHHHH
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQK--ADVI-E------NSLFTNVKIPIFIMNASP-LVDVSKFL 253 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~~--~g~~-~------~~~~~~~~~Pv~aiGGi~-~~~~~~~~ 253 (921)
+++-.+-+.+.++.. ...|||.|-+| |- |..- .|.. . .++++...+||+|=|||. ..++..++
T Consensus 325 viaGNVaT~e~a~~L-i~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAl 403 (556)
T 4af0_A 325 VIAGNVVTREQAAQL-IAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKAL 403 (556)
T ss_dssp EEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH
T ss_pred EEeccccCHHHHHHH-HHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHh
Confidence 677788888887776 67899998665 53 3332 3333 1 455667789999999995 67899999
Q ss_pred HcCCcEEEE
Q 002437 254 KSGASGFVI 262 (921)
Q Consensus 254 ~~Ga~gva~ 262 (921)
++||+.|-+
T Consensus 404 aaGAd~VMl 412 (556)
T 4af0_A 404 ALGASAVMM 412 (556)
T ss_dssp HTTCSEEEE
T ss_pred hcCCCEEEE
Confidence 999999955
No 389
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.54 E-value=0.067 Score=51.58 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|.-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456689999999999999999999864
No 390
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=92.52 E-value=0.1 Score=53.78 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=56.7
Q ss_pred ecCCHHHHHcccccCCCCEEEe-C-CC-CCCCCCcc----hhhhhh-cCC-CCEEEEcCCC-ccChHHHHHcCCcEEEEe
Q 002437 194 NVQTLDAAFNASSSEGADFLVC-C-FG-EGQKADVI----ENSLFT-NVK-IPIFIMNASP-LVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 194 S~h~~~e~~~A~~~~gaDyv~~-g-pv-Tk~~~g~~----~~~~~~-~~~-~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~ 263 (921)
.+.|+..+++. ...|+|+|.- | |+ |.. |+. ...+++ ..+ +||++-|||. ++++..+++.||+||.|-
T Consensus 131 ~~~D~~~ak~l-~~~G~~aVmPlg~pIGsG~--Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 131 MGPDLVLAKRL-AALGTATVMPLAAPIGSGW--GVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp ECSCHHHHHHH-HHHTCSCBEEBSSSTTTCC--CSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHH-HhcCCCEEEecCccCcCCc--ccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 44689888888 7899999965 2 34 432 332 366777 667 9999999995 799999999999999998
Q ss_pred eccccc
Q 002437 264 LEDLSL 269 (921)
Q Consensus 264 ~a~~~~ 269 (921)
+|..+.
T Consensus 208 SAI~~a 213 (268)
T 2htm_A 208 TAIAEA 213 (268)
T ss_dssp HHHHTS
T ss_pred hHHhCC
Confidence 877763
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.52 E-value=0.064 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
-.++++|+.|||||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999963
No 392
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.51 E-value=0.06 Score=55.69 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999863
No 393
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.40 E-value=0.062 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999999953
No 394
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.34 E-value=0.063 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999999963
No 395
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.33 E-value=0.065 Score=53.62 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.....|+++|++||||||+++.|.+.-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999998753
No 396
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.33 E-value=0.057 Score=56.76 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...-.++|+|++|||||||+++|.|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 35568999999999999999999884
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.30 E-value=0.065 Score=56.15 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999999963
No 398
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.29 E-value=0.066 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999963
No 399
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.29 E-value=0.065 Score=56.34 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999963
No 400
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.29 E-value=0.067 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
No 401
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.22 E-value=0.063 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..-.++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456799999999999999998654
No 402
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.17 E-value=0.066 Score=54.45 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
-.++++|+.|||||||++.|.|-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999963
No 403
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.16 E-value=0.071 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
....|+++|++||||||+++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45679999999999999999998763
No 404
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=92.12 E-value=0.12 Score=59.47 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCHHHHHcccccCCCCEEEeCCC--CCCCCC---cc-hhhhhhcC-------CCCEEEEcCCC-ccChHHHHHcCCcEEE
Q 002437 196 QTLDAAFNASSSEGADFLVCCFG--EGQKAD---VI-ENSLFTNV-------KIPIFIMNASP-LVDVSKFLKSGASGFV 261 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g---~~-~~~~~~~~-------~~Pv~aiGGi~-~~~~~~~~~~Ga~gva 261 (921)
-+.+++..| .+.|+|+|.+|-- |.-..+ +. ..++.+.+ ++||++-|||. ..++.+++..||++|.
T Consensus 352 ~~~e~A~~a-~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~ 430 (511)
T 1kbi_A 352 QRTEDVIKA-AEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVG 430 (511)
T ss_dssp CSHHHHHHH-HHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 358999999 8999999999743 311111 22 23444433 79999999994 7789999999999998
Q ss_pred Eeeccc
Q 002437 262 ISLEDL 267 (921)
Q Consensus 262 ~~~a~~ 267 (921)
+.++.+
T Consensus 431 iGr~~l 436 (511)
T 1kbi_A 431 LGRPFL 436 (511)
T ss_dssp ECHHHH
T ss_pred ECHHHH
Confidence 766443
No 405
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.11 E-value=0.076 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.++++|+.|||||||++.|.|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999996
No 406
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=92.09 E-value=0.28 Score=56.48 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=72.9
Q ss_pred CcHHHHHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC---
Q 002437 149 ERVDIAAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--- 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--- 218 (921)
++...+.+.|+|.+-++...-. ....+... |+ . .+++-.+.+.+.+..+ ...|+|+|.+|--
T Consensus 236 ~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~----p~-~--pvi~G~v~t~~~a~~~-~~~Gad~I~vg~g~g~ 307 (491)
T 1zfj_A 236 ERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHF----PN-R--TLIAGNIATAEGARAL-YDAGVDVVKVGIGPGS 307 (491)
T ss_dssp HHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHC----SS-S--CEEEEEECSHHHHHHH-HHTTCSEEEECSSCCT
T ss_pred HHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHC----CC-C--cEeCCCccCHHHHHHH-HHcCCCEEEECccCCc
Confidence 4566666778988877543211 12223333 22 1 2456667888999888 8999999988731
Q ss_pred ---CC--CCCC---cc-hhhh---hhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 ---EG--QKAD---VI-ENSL---FTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 ---Tk--~~~g---~~-~~~~---~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|. ...+ +. ..++ +...++||+|-||| ++.++.+++++||++|.+-++...
T Consensus 308 ~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 308 ICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG 370 (491)
T ss_dssp TBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred ceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence 10 1111 11 2233 23468999999999 588899999999999988776653
No 407
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.05 E-value=0.073 Score=55.75 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999963
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.05 E-value=0.074 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
No 409
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.02 E-value=0.074 Score=55.95 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44579999999999999999999963
No 410
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.00 E-value=0.049 Score=54.11 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=25.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCC--CCCCCCCCccce
Q 002437 367 LVIVGEYNSGKSSVINALLGKR--YLKDGVVPTTNE 400 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~--~~~~~~~~tT~~ 400 (921)
|+|+|++|+|||||++.|+... .+......||+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 7899999999999999998653 223345556654
No 411
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=91.99 E-value=0.17 Score=52.88 Aligned_cols=187 Identities=11% Similarity=-0.010 Sum_probs=106.4
Q ss_pred EEEEcCCCC-CCCchHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHhhcCceEEecCc---HHHH-HhCCCC
Q 002437 88 LQLEPHQVL-AGGDALDLIDEAVAKFVGIVVLNGGEAS--GKSVYEAACLLKSVVKDRALFLIAER---VDIA-AAVNAS 160 (921)
Q Consensus 88 lylit~~~~-~~~~~~~~~~~~l~~g~~~vqlR~k~~~--~~~~~~~a~~l~~~~~~~~~~ivnd~---~dla-~~~~a~ 160 (921)
+..+.||.- ..++..+.++.+...|.+.|.+=.-+.+ ...+.+....+++.+ ..+++++.. -+.. ..-+||
T Consensus 41 ~~~liDPdK~~~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~--~lPvil~fPP~~g~~~~i~~~aD 118 (286)
T 3vk5_A 41 PVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAAT--PLPVVLHFPPRPGAGFPVVRGAD 118 (286)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHC--SSCEEEECCCBTTTBSCCCTTCS
T ss_pred ceEEECCCCCCcHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhC--CCCEEEECCCCCCCccccccCCC
Confidence 333445543 2335556788888999999998722234 455555566555544 578888322 1111 112688
Q ss_pred eEEc----CCCCCCH-HHH--HH----hc----ccCC---CC-------c-cccCeEE-EecCCHHHH------Hccccc
Q 002437 161 GVLL----SDQGLPA-IVA--RN----TM----KDSM---SE-------S-VVLPLVG-RNVQTLDAA------FNASSS 207 (921)
Q Consensus 161 GvHL----~~~~l~~-~~~--r~----~~----~~~~---~~-------~-~~~~~ig-~S~h~~~e~------~~A~~~ 207 (921)
++-+ ++.+-.. ..+ .. .+ .+++ |. + +-+..++ +...+++.+ ..+ ..
T Consensus 119 a~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~g-ad 197 (286)
T 3vk5_A 119 ALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVA-RA 197 (286)
T ss_dssp EEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHH-HH
T ss_pred EEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHH-HH
Confidence 7654 3333111 111 10 00 0000 00 0 0001122 112232222 233 45
Q ss_pred CCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 208 EGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 208 ~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
.|.++|.+- .+..+..++ .+.+++.+ .+|+++-||| +++++.++.++||++|.+-++.++.-|+++++.+
T Consensus 198 ~G~~lV~LD-~~~~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv~e~ 271 (286)
T 3vk5_A 198 FGFHMVYLY-SRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAEI 271 (286)
T ss_dssp TTCSEEEEE-CSSSCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHHHHH
T ss_pred cCCCEEEEc-CCCCcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHHHHH
Confidence 677888776 343333333 57788888 8999999999 5788999999999999999999876577777776
No 412
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=91.98 E-value=0.083 Score=57.75 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHcccccCCCCEEEeCCC--CC----CCCCc--c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeeccccc
Q 002437 201 AFNASSSEGADFLVCCFG--EG----QKADV--I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpv--Tk----~~~g~--~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++.. .+.|+||+-++-- .. ..++. . ...+++.+++||++-||| +++++.++++.| |+.|++.++.+..
T Consensus 235 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lan 313 (340)
T 3gr7_A 235 AKRM-KEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRN 313 (340)
T ss_dssp HHHH-HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHH-HHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhC
Confidence 3344 6789999998532 11 12232 2 367778889999999999 588999999999 9999999988764
No 413
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.97 E-value=0.076 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++++|+.|||||||++.|.|-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999996
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.96 E-value=0.082 Score=54.89 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999999963
No 415
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.95 E-value=0.08 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++++|+.|||||||++.|.|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999996
No 416
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.92 E-value=0.077 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999963
No 417
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.85 E-value=0.1 Score=55.98 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+...-.++|+|++|+|||||++.|.|-
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 5566678999999999999999999874
No 418
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.78 E-value=0.082 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999963
No 419
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.67 E-value=0.084 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478999999999999999999963
No 420
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=91.65 E-value=0.093 Score=57.64 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCHHHHHcccccCCCCEEEeC-CC-C--------CC--------CCCcc----hhhhhhcC-CCCEEEEcCCC-ccChHH
Q 002437 196 QTLDAAFNASSSEGADFLVCC-FG-E--------GQ--------KADVI----ENSLFTNV-KIPIFIMNASP-LVDVSK 251 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~g-pv-T--------k~--------~~g~~----~~~~~~~~-~~Pv~aiGGi~-~~~~~~ 251 (921)
-+.+++..| .+.|+|+|.++ +. | +. ..|+. ..++.+.. ++||++-|||. ++++.+
T Consensus 190 ~~~~~a~~a-~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k 268 (349)
T 1p0k_A 190 MSKASAGKL-YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAK 268 (349)
T ss_dssp CCHHHHHHH-HHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHH
T ss_pred CCHHHHHHH-HHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence 468889988 89999999995 21 2 21 22332 24555554 89999999995 889999
Q ss_pred HHHcCCcEEEEeecccc
Q 002437 252 FLKSGASGFVISLEDLS 268 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~~~ 268 (921)
++.+||++|.+.++.+.
T Consensus 269 ~l~~GAd~V~iG~~~l~ 285 (349)
T 1p0k_A 269 AIALGASCTGMAGHFLK 285 (349)
T ss_dssp HHHTTCSEEEECHHHHH
T ss_pred HHHcCCCEEEEcHHHHH
Confidence 99999999987775544
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.65 E-value=0.063 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.++++|+.|||||||++.|.|.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999986
No 422
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.60 E-value=0.12 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.......|+++|.+||||||+.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3456678999999999999999999885
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.60 E-value=0.093 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
......|+|+|++|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456789999999999999999999874
No 424
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.57 E-value=0.088 Score=55.45 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999999863
No 425
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.56 E-value=0.088 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
No 426
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.54 E-value=0.77 Score=47.84 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=37.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCe-EEEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKK-VVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~-vivVlNK~D~~ 504 (921)
+++||||||......-. ..-....+|.+|+|+..+......-..+++.+.. .+.+ +-+|+|+.+..
T Consensus 117 D~iiiD~~~~~~~~~~~---~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 117 DYVFYDVLGDVVCGGFA---MPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp SEEEEEEECSSCSTTTT---HHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CEEEEeCCchhhhhhhh---hhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 68999999853211000 1111257999999998763222222234444443 2345 46899998743
No 427
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.53 E-value=0.093 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+|+|++||||||+.+.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999764
No 428
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.52 E-value=0.094 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+++|+.|||||||++.|.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999998763
No 429
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=91.44 E-value=0.09 Score=63.24 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=54.8
Q ss_pred HHcccccCCCCEEEeC-----CC----CCC-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeec
Q 002437 201 AFNASSSEGADFLVCC-----FG----EGQ-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLE 265 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~g-----pv----Tk~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a 265 (921)
++.+ .+.|+||+.++ |. ++. +++ +. ...+++.+++||++.||| +++++.++++.| |++|++.++
T Consensus 234 a~~l-~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~ 312 (671)
T 1ps9_A 234 AQAI-EAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARP 312 (671)
T ss_dssp HHHH-HHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTH
T ss_pred HHHH-HhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHH
Confidence 3444 67899999886 22 111 111 22 367788889999999999 799999999998 999999998
Q ss_pred ccccchHHHHHhh
Q 002437 266 DLSLFNDGVLSQM 278 (921)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (921)
.+.. +++..++
T Consensus 313 ~l~~--P~l~~k~ 323 (671)
T 1ps9_A 313 FLAD--AELLSKA 323 (671)
T ss_dssp HHHC--TTHHHHH
T ss_pred HHhC--cHHHHHH
Confidence 8865 3455554
No 430
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.41 E-value=0.077 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...|+++|.+||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999774
No 431
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.36 E-value=0.067 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|++|||||||++.|.|-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44589999999999999999999853
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.34 E-value=0.095 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.++|+|.+|+|||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
No 433
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.32 E-value=0.093 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....|+++|.+||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999753
No 434
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.29 E-value=0.32 Score=51.53 Aligned_cols=65 Identities=11% Similarity=-0.020 Sum_probs=36.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCe-EEEEEeCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKK-VVFVLNKSDL 503 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~-vivVlNK~D~ 503 (921)
+++||||||......- ...-....+|.+|+|+..+......-..+++.+.. .+.+ +-+|+|+.+.
T Consensus 120 D~ViID~~~~~~~~~~---~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 120 DFVFYDVLGDVVCGGF---AMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp SEEEEEEECSSCCTTT---THHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CEEEEeCCCccccchh---hhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 6899999985311100 01112257999999998763221222234444432 2445 4588999873
No 435
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.22 E-value=0.12 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH---CCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL---GKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl---g~~ 388 (921)
.+..|+++|++||||||+++.|. |..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35689999999999999999999 753
No 436
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.11 E-value=0.056 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|+|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 437
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.05 E-value=0.11 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 002437 365 FLLVIVGEYNSGKSSVINAL 384 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaL 384 (921)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 438
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.00 E-value=0.092 Score=57.79 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
-.|+|+|++|||||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999874
No 439
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.97 E-value=0.15 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|.+||||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
No 440
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.96 E-value=0.11 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999964
No 441
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.88 E-value=0.11 Score=57.36 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++|+|++|||||||+|+|++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999985
No 442
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.87 E-value=0.1 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..++++|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3688999999999999999986
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.84 E-value=0.11 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++.|+++|.+||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 444
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.83 E-value=0.23 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.....|+++|.+||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.82 E-value=0.077 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH-CC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL-GK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl-g~ 387 (921)
....++++|++|||||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999999 75
No 446
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.15 Score=53.37 Aligned_cols=153 Identities=9% Similarity=-0.047 Sum_probs=90.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEec-----CcHHHHHhCCCCeEEcCCCCCC----
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA-----ERVDIAAAVNASGVLLSDQGLP---- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivn-----d~~dla~~~~a~GvHL~~~~l~---- 170 (921)
+..+......+.|++.+++=+=+... .+.++++...+ ..++.+. .+.+-.. .||+-|-+|..-+.
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~~n---~~~i~~i~~~~--~~pv~vgGGir~~~~~~~l-~Ga~~Viigs~a~~~~g~ 112 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGPNN---DDAAREALQES--PQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGH 112 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESSSC---HHHHHHHHHHS--TTTSEEESSCCTTTHHHHT-TTCSCEEECGGGBCTTCC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCC---HHHHHHHHhcC--CceEEEeCCCCHHHHHHHh-cCCCEEEECcHHHhhcCC
Confidence 45577777778888776663312111 22333333322 2233321 1344444 78999999876442
Q ss_pred --HHHHHHh---cccCCCCccccCeEEEecC--------------------C-H-HHHHcccccCCCCEEEeCCCCC---
Q 002437 171 --AIVARNT---MKDSMSESVVLPLVGRNVQ--------------------T-L-DAAFNASSSEGADFLVCCFGEG--- 220 (921)
Q Consensus 171 --~~~~r~~---~~~~~~~~~~~~~ig~S~h--------------------~-~-~e~~~A~~~~gaDyv~~gpvTk--- 220 (921)
+...+.+ +| ++ .+ +++.+|. + . +-+..+ .+. |+.+++-.+|+
T Consensus 113 ~~p~~~~~~~~~~g---~~-~i--vv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~-~~~-a~~il~t~i~~dG~ 184 (260)
T 2agk_A 113 FQLKRLERLTELCG---KD-RI--VVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFREL-RKY-TNEFLIHAADVEGL 184 (260)
T ss_dssp BCHHHHHHHHHHHC---GG-GE--EEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHH-TTT-CSEEEEEC------
T ss_pred CCHHHHHHHHHHhC---cC-cE--EEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHH-HHh-cCEEEEEeeccccC
Confidence 2222222 22 23 22 3444442 1 2 445565 677 99999977743
Q ss_pred -CCCCcc-hhhhhhcC----CCCEEEEcCC-CccChHHHHHc--CCcEEEEeecc
Q 002437 221 -QKADVI-ENSLFTNV----KIPIFIMNAS-PLVDVSKFLKS--GASGFVISLED 266 (921)
Q Consensus 221 -~~~g~~-~~~~~~~~----~~Pv~aiGGi-~~~~~~~~~~~--Ga~gva~~~a~ 266 (921)
..+.++ .+.+++.+ ++||+|-||| +++++..+.+. |++||.+-+|.
T Consensus 185 ~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 185 CGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp -CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred cCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 334444 57888888 9999999999 58999999987 99999877775
No 447
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.79 E-value=0.12 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 448
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=90.66 E-value=0.15 Score=55.99 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=49.8
Q ss_pred ccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeeccccc
Q 002437 206 SSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 206 ~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
.+.|+||+-++.-+ .|.. ...+++.+++||++.|||+++++.++++.| ++.|++.++.+..
T Consensus 260 ~~~Gvd~i~v~~~~---~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~lad 322 (361)
T 3gka_A 260 GRRRIAFLFARESF---GGDAIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIAN 322 (361)
T ss_dssp HHTTCSEEEEECCC---STTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHcCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhC
Confidence 56799999886543 1113 467788889999999999999999999998 9999998888765
No 449
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.59 E-value=0.38 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|..|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 450
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.57 E-value=3.5 Score=44.95 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=30.0
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCC
Q 002437 463 ADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLY 504 (921)
Q Consensus 463 aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~ 504 (921)
.+.+++|+..+.....+-...+..++..+.|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 47888888776543344455777788888876 4789998765
No 451
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.51 E-value=0.13 Score=56.46 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999964
No 452
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=90.44 E-value=0.68 Score=47.84 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS---GKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~---~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+......+.|++.+++=+=+.. .....+.++++...| ..++-+-. +.+-....||+-|-++..-+.
T Consensus 32 dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~ 109 (243)
T 4gj1_A 32 NPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIK 109 (243)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTT
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEcccccc
Confidence 4456676777889998888541110 001123344444333 56777643 445566789999999877654
Q ss_pred H----HHHHHhcccCCCCccccCeEEEe----------cC--------CH-HHHHcccccCCCCEEEeCCC----CCCCC
Q 002437 171 A----IVARNTMKDSMSESVVLPLVGRN----------VQ--------TL-DAAFNASSSEGADFLVCCFG----EGQKA 223 (921)
Q Consensus 171 ~----~~~r~~~~~~~~~~~~~~~ig~S----------~h--------~~-~e~~~A~~~~gaDyv~~gpv----Tk~~~ 223 (921)
- ..+-..+| ++ .+ .++.- +| ++ +-+.+. ...|+.-+++-.+ |...+
T Consensus 110 ~p~li~e~~~~~g---~q-~i--v~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~-~~~g~~eil~t~Id~DGt~~G~ 182 (243)
T 4gj1_A 110 DATLCLEILKEFG---SE-AI--VLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY-SNKGLKHILCTDISKDGTMQGV 182 (243)
T ss_dssp CHHHHHHHHHHHC---TT-TE--EEEEEEEESSSEEEC--------CCBHHHHHHHH-HTTTCCEEEEEETTC-----CC
T ss_pred CCchHHHHHhccc---Cc-eE--EEEEEEEeCCCCEEEecCceecccchHHHHHHHH-hhcCCcEEEeeeecccccccCC
Confidence 2 12223334 33 22 12221 22 23 335566 6889999988777 44555
Q ss_pred Ccc-hhhhhhcC-CCCEEEEcCCC-ccChHHHHHcCCcEEEEeecc
Q 002437 224 DVI-ENSLFTNV-KIPIFIMNASP-LVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 224 g~~-~~~~~~~~-~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~ 266 (921)
.++ .+.+++.+ ++||+|-||++ .+++..+ +.+++|+.+.+|-
T Consensus 183 d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al 227 (243)
T 4gj1_A 183 NVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKAL 227 (243)
T ss_dssp CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHH
T ss_pred CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHH
Confidence 555 57777766 69999999995 7788877 5679998765543
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.44 E-value=0.16 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 454
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.40 E-value=0.11 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
-.++|+|++|||||||+|+|.|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999985
No 455
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.40 E-value=0.17 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=21.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+..|+++|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999854
No 456
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.29 E-value=0.15 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34478999999999999999999964
No 457
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.28 E-value=0.1 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++++|+.|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999999874
No 458
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.24 E-value=0.17 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+..|+++|.+||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 459
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.23 E-value=0.15 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
...|+++|.+||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 460
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=90.17 E-value=0.18 Score=55.49 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=52.7
Q ss_pred ccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHHHhh
Q 002437 206 SSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 206 ~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~~~~ 278 (921)
.+.|+||+-++.-+ .|.. ...+++.+++||++.||++++++.++++.| ++.|++.++.+... ++.+++
T Consensus 252 ~~~Gvd~i~v~~~~---~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanP--dl~~k~ 321 (362)
T 4ab4_A 252 GKRGIAFICSRERE---ADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANP--DLPARL 321 (362)
T ss_dssp HHTTCSEEEEECCC---CTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT--THHHHH
T ss_pred HHhCCCEEEECCCC---CCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCc--HHHHHH
Confidence 56799999886543 1213 467788889999999999999999999998 99999988887652 344444
No 461
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.09 E-value=0.21 Score=50.67 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
+...-.++++|++|||||||++.|.|.-.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456899999999999999999998543
No 462
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=89.96 E-value=0.21 Score=56.31 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=49.6
Q ss_pred HHcccccCCCCEEEeCCCCCCC----------CCc----------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcC
Q 002437 201 AFNASSSEGADFLVCCFGEGQK----------ADV----------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSG 256 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk~~----------~g~----------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~G 256 (921)
+..+ .+.|+|+|.++.-|... -|+ . ...+++.+ ++||++.||| +++++.+++.+|
T Consensus 317 A~~~-~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aG 395 (443)
T 1tv5_A 317 ADVL-LETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG 395 (443)
T ss_dssp HHHH-HHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTT
T ss_pred HHHH-HHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 4455 78899999998653321 111 1 24566667 8999999999 588899999999
Q ss_pred CcEEEEeeccc
Q 002437 257 ASGFVISLEDL 267 (921)
Q Consensus 257 a~gva~~~a~~ 267 (921)
|+.|.+.++.+
T Consensus 396 Ad~Vqigrall 406 (443)
T 1tv5_A 396 ASVCQLYSCLV 406 (443)
T ss_dssp EEEEEESHHHH
T ss_pred CCEEEEcHHHH
Confidence 99999888855
No 463
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.94 E-value=0.23 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++.|+|+|.+|||||||.+.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988753
No 464
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.83 E-value=0.16 Score=55.61 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999964
No 465
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.83 E-value=0.13 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.|+|+|++|||||||+++|+|.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
No 466
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.82 E-value=0.31 Score=51.33 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=45.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~ 504 (921)
+++|||||+...... +......+|.+|+|+..+......-...++.+...+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~d-----~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVTD-----AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCSH-----HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHHH-----HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 689999999743221 1223356899999999986554444566777777777776 899999864
No 467
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.74 E-value=0.17 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34478999999999999999999964
No 468
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=89.72 E-value=0.22 Score=54.31 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred HHcccccCCCCEEEeCCCCC-------C----C----CCc-------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHH
Q 002437 201 AFNASSSEGADFLVCCFGEG-------Q----K----ADV-------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk-------~----~----~g~-------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
+..+ .+.|+|+|.++.-|. + . .|. . ...+++.+ ++||++-||| +++++.++++
T Consensus 231 a~~l-~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~ 309 (336)
T 1f76_A 231 ADSL-VRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA 309 (336)
T ss_dssp HHHH-HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHH-HHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 4566 788999999874311 0 0 121 1 24566666 8999999999 4889999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
+||++|.+.++.+.
T Consensus 310 ~GAd~V~igr~~l~ 323 (336)
T 1f76_A 310 AGASLVQIYSGFIF 323 (336)
T ss_dssp HTCSEEEESHHHHH
T ss_pred CCCCEEEeeHHHHh
Confidence 99999988887653
No 469
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.70 E-value=0.17 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 470
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.62 E-value=0.15 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 471
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.62 E-value=0.14 Score=59.06 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++|+|++||||||++|+|+|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999984
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.52 E-value=0.13 Score=58.92 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+.+|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 473
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.49 E-value=0.18 Score=55.40 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34578999999999999999999963
No 474
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.48 E-value=3 Score=44.91 Aligned_cols=42 Identities=5% Similarity=-0.026 Sum_probs=29.5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCC
Q 002437 463 ADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLY 504 (921)
Q Consensus 463 aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~ 504 (921)
.+.+++|+..+.....+-...+..++..+.|+ -+|+|++...
T Consensus 222 ~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 222 RTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CCeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 35888998776433344445777888888776 4789998754
No 475
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=89.43 E-value=0.15 Score=56.20 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHcccccCCCCEEEeCCC--C---C-C-CCCc--c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeecccc
Q 002437 201 AFNASSSEGADFLVCCFG--E---G-Q-KADV--I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpv--T---k-~-~~g~--~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
++.. .+.|+||+-++.- . . + .++. . ...+++.+++||++.||| +++++.++++.| |+.|++.++.+.
T Consensus 252 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 252 ARRF-KAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHH-HHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHH-HHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 3344 5679999988742 1 1 1 1222 2 366777789999999999 589999999999 999999888775
Q ss_pred c
Q 002437 269 L 269 (921)
Q Consensus 269 ~ 269 (921)
.
T Consensus 331 n 331 (363)
T 3l5l_A 331 D 331 (363)
T ss_dssp C
T ss_pred C
Confidence 4
No 476
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.41 E-value=0.17 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
No 477
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.40 E-value=0.18 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34478999999999999999999964
No 478
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.37 E-value=0.18 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.|+|+|++||||||++++|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999884
No 479
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.34 E-value=0.22 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++.|+|+|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999764
No 480
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.34 E-value=0.22 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++.|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
No 481
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.31 E-value=0.14 Score=55.34 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..+.++|+|..|||||||+|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999763
No 482
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.27 E-value=0.22 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl 385 (921)
....|+++|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 483
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.19 E-value=0.19 Score=55.47 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3478999999999999999999964
No 484
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=89.14 E-value=1.2 Score=61.52 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHHHHHHhcC-CcEEEEeCCCC-CHHHHHHHHHHHHHHhhcC----ceEEe-c-----------CcHHHHHhCC--CCeE
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEA-SGKSVYEAACLLKSVVKDR----ALFLI-A-----------ERVDIAAAVN--ASGV 162 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~-~~~~~~~~a~~l~~~~~~~----~~~iv-n-----------d~~dla~~~~--a~Gv 162 (921)
+.+.+...+| +..+ -..+. +.+.+.+.++++++++..+ +-++. | ..++.+.+.| +|||
T Consensus 443 ~LaaAVs~AGglG~l--~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv 520 (3089)
T 3zen_D 443 KIVAAAANAGHWAEL--AGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGL 520 (3089)
T ss_dssp HHHHHHHHTTCEEEE--CSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred HHHHHHHhCCCceee--cCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEE
Confidence 3343444444 4433 23333 7788899999999988532 22332 2 2345677778 8999
Q ss_pred EcCCCCCC-HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCC------EEEe-CCCCCCCCCcc-----h--
Q 002437 163 LLSDQGLP-AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD------FLVC-CFGEGQKADVI-----E-- 227 (921)
Q Consensus 163 HL~~~~l~-~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD------yv~~-gpvTk~~~g~~-----~-- 227 (921)
-++. ++| ..++..+...-+..+ +.+|...+-+.+++.++ .+.|+| +|++ |+--.-|.|.. .
T Consensus 521 ~~~a-G~P~~ee~~~~i~~l~~~G--i~~i~~~~~t~~~a~~~-~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~ 596 (3089)
T 3zen_D 521 VVSA-GIPDLEEAVDIIDELNEVG--ISHVVFKPGTVEQIRSV-IRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLA 596 (3089)
T ss_dssp EEES-SCCCHHHHHHHHTSTTHHH--HCSEEECCCSHHHHHHH-HHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHH
T ss_pred EEeC-CCCchhHhHHHHHHHHHcC--CEEEEEeCCCHHHHHHH-HHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHH
Confidence 8876 666 444444331000011 12577678888888777 677777 3333 32212233322 2
Q ss_pred --hhhhhcCCCCEEEEcCC-CccChHHHH-----------HcCCcEEEEeecccc
Q 002437 228 --NSLFTNVKIPIFIMNAS-PLVDVSKFL-----------KSGASGFVISLEDLS 268 (921)
Q Consensus 228 --~~~~~~~~~Pv~aiGGi-~~~~~~~~~-----------~~Ga~gva~~~a~~~ 268 (921)
..+++..++||+|-||| +++.+..++ ..||+||.|-.+-+.
T Consensus 597 ~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~ 651 (3089)
T 3zen_D 597 TYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMA 651 (3089)
T ss_dssp HHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTT
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHh
Confidence 45667789999999999 578899999 999999998555544
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.07 E-value=0.97 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+..|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998753
No 486
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.05 E-value=0.2 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999999964
No 487
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.01 E-value=0.21 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+..|.++|.+||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999753
No 488
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=88.99 E-value=0.3 Score=53.78 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=48.5
Q ss_pred HHcccccCCCCEEEeCCCCCC------C------CCc----------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHH
Q 002437 201 AFNASSSEGADFLVCCFGEGQ------K------ADV----------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk~------~------~g~----------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
+..+ .+.|+|.|.+..-|.. + -|+ . ...+++.+ ++||++.||| +++++.+++.
T Consensus 240 a~~~-~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~ 318 (367)
T 3zwt_A 240 ASVV-KELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR 318 (367)
T ss_dssp HHHH-HHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHH-HHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH
Confidence 3344 6789999998754211 0 122 1 24566677 8999999999 5888999999
Q ss_pred cCCcEEEEeeccc
Q 002437 255 SGASGFVISLEDL 267 (921)
Q Consensus 255 ~Ga~gva~~~a~~ 267 (921)
+||++|.+.++.+
T Consensus 319 ~GAd~V~vgra~l 331 (367)
T 3zwt_A 319 AGASLVQLYTALT 331 (367)
T ss_dssp HTCSEEEESHHHH
T ss_pred cCCCEEEECHHHH
Confidence 9999999988875
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.91 E-value=0.19 Score=50.23 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+..|+++|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 490
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.87 E-value=0.21 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
....|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
No 491
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.79 E-value=0.26 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++.|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999864
No 492
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.77 E-value=0.26 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998653
No 493
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.72 E-value=6.4 Score=34.47 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=45.0
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 871 HLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 871 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
..+.-|+..++.|+..+..|...=++++.+.+.++.++..|+.+.++|.
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 4677888899999999999999999999999999999999999999874
No 494
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.69 E-value=0.25 Score=49.28 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
....|+++|.+||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.68 E-value=0.22 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+|+|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999865
No 496
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=88.68 E-value=0.44 Score=54.92 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=54.0
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCC------CC--CCCCcc----hhhhh---hcC------CCCEEEEcCC-Ccc
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFG------EG--QKADVI----ENSLF---TNV------KIPIFIMNAS-PLV 247 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------Tk--~~~g~~----~~~~~---~~~------~~Pv~aiGGi-~~~ 247 (921)
++.-.+-+.+++..+ .+.|+|++.+|-- |. .+.|.. ..++. ... .+||+|-||| ++.
T Consensus 287 Vi~G~V~t~~~a~~l-~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 287 VGAGNIVDGEGFRYL-ADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred EeeccccCHHHHHHH-HHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 555678889998888 7999999987631 22 122332 12332 222 6999999999 588
Q ss_pred ChHHHHHcCCcEEEEeecc
Q 002437 248 DVSKFLKSGASGFVISLED 266 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~ 266 (921)
++..++++||++|.+-+..
T Consensus 366 di~kAlalGA~~V~iG~~~ 384 (503)
T 1me8_A 366 HMTLALAMGADFIMLGRYF 384 (503)
T ss_dssp HHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHcCCCEEEECchh
Confidence 8999999999999765433
No 497
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=88.66 E-value=0.17 Score=54.52 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 228 NSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 228 ~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
..+++.+ ++||++.||| +++++.+++.+||++|.+.++.+.
T Consensus 233 ~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 233 RAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp HHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 5666777 8999999999 688999999999999999988874
No 498
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.59 E-value=0.23 Score=51.14 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..-.++++|++|||||||++.|++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445799999999999999999983
No 499
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.58 E-value=0.26 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++.|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.57 E-value=0.23 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34578999999999999999999953
Done!