Query 002439
Match_columns 921
No_of_seqs 479 out of 1676
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 00:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 3.5E-68 7.6E-73 602.0 41.4 380 456-876 617-1005(1102)
2 smart00498 FH2 Formin Homology 100.0 2.6E-64 5.5E-69 581.2 36.7 375 458-875 3-385 (432)
3 PF02181 FH2: Formin Homology 100.0 8.5E-61 1.8E-65 542.9 32.7 364 457-861 3-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 3.5E-49 7.6E-54 489.9 36.4 428 459-918 390-830 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 3.4E-49 7.5E-54 451.8 31.0 369 454-873 360-739 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 4.5E-41 9.7E-46 367.2 30.2 363 460-873 279-656 (817)
7 KOG1924 RhoA GTPase effector D 99.0 3.7E-09 8E-14 123.2 13.5 28 459-486 634-662 (1102)
8 KOG3671 Actin regulatory prote 98.7 3.3E-07 7E-12 103.4 16.1 31 301-331 228-258 (569)
9 PHA03247 large tegument protei 98.4 4.1E-05 9E-10 99.9 25.8 9 59-67 2534-2542(3151)
10 PHA03247 large tegument protei 98.3 0.00025 5.4E-09 93.0 28.6 12 39-50 2330-2341(3151)
11 smart00498 FH2 Formin Homology 97.7 0.0001 2.2E-09 86.2 10.2 113 756-868 315-432 (432)
12 KOG3671 Actin regulatory prote 97.4 0.0021 4.6E-08 73.4 14.4 9 72-80 93-101 (569)
13 KOG1923 Rac1 GTPase effector F 96.9 0.068 1.5E-06 64.5 19.8 32 636-667 555-586 (830)
14 KOG1830 Wiskott Aldrich syndro 95.8 0.27 6E-06 55.6 16.0 9 535-543 489-497 (518)
15 PF13908 Shisa: Wnt and FGF in 94.6 0.22 4.7E-06 51.4 10.1 15 244-258 77-91 (179)
16 PF04478 Mid2: Mid2 like cell 94.1 0.041 8.8E-07 54.6 3.1 29 244-272 47-77 (154)
17 PHA03291 envelope glycoprotein 92.9 0.66 1.4E-05 51.7 10.3 49 238-286 278-327 (401)
18 PF08693 SKG6: Transmembrane a 91.5 0.11 2.3E-06 40.2 1.6 31 240-270 6-36 (40)
19 PF13908 Shisa: Wnt and FGF in 90.5 1.5 3.3E-05 45.1 9.6 18 245-262 74-91 (179)
20 PF01102 Glycophorin_A: Glycop 88.0 0.44 9.5E-06 46.1 3.1 36 241-276 59-94 (122)
21 PF12877 DUF3827: Domain of un 85.7 0.86 1.9E-05 54.7 4.4 30 243-272 267-296 (684)
22 PF14575 EphA2_TM: Ephrin type 84.1 0.77 1.7E-05 40.7 2.4 27 248-274 2-28 (75)
23 PF02439 Adeno_E3_CR2: Adenovi 83.0 1.5 3.2E-05 33.5 3.1 8 265-272 24-31 (38)
24 KOG4672 Uncharacterized conser 82.0 16 0.00034 42.0 12.0 12 544-555 469-480 (487)
25 PF10873 DUF2668: Protein of u 81.7 5.7 0.00012 39.2 7.5 30 241-270 56-85 (155)
26 KOG0994 Extracellular matrix g 81.7 55 0.0012 42.3 17.3 19 647-665 1470-1488(1758)
27 PF01034 Syndecan: Syndecan do 81.5 0.55 1.2E-05 40.0 0.5 23 246-268 9-31 (64)
28 PTZ00382 Variant-specific surf 79.8 0.83 1.8E-05 42.4 1.1 30 241-270 61-91 (96)
29 KOG4849 mRNA cleavage factor I 79.1 57 0.0012 36.8 14.8 10 493-502 357-366 (498)
30 PF02480 Herpes_gE: Alphaherpe 78.2 0.68 1.5E-05 54.4 0.0 32 245-276 351-382 (439)
31 PRK15319 AIDA autotransporter- 78.1 3.4 7.4E-05 55.1 6.1 7 481-487 1763-1769(2039)
32 KOG1922 Rho GTPase effector BN 78.0 2.2E+02 0.0047 36.7 30.9 29 635-663 624-652 (833)
33 PF14914 LRRC37AB_C: LRRC37A/B 76.4 2.6 5.7E-05 41.7 3.4 24 240-263 114-137 (154)
34 PF15069 FAM163: FAM163 family 76.3 2.4 5.3E-05 41.8 3.2 25 245-269 5-29 (143)
35 KOG4849 mRNA cleavage factor I 73.1 1.3E+02 0.0029 34.0 15.7 6 305-310 181-186 (498)
36 KOG0994 Extracellular matrix g 72.4 2.8E+02 0.0061 36.5 19.7 27 575-601 1510-1537(1758)
37 PF07172 GRP: Glycine rich pro 69.6 3 6.5E-05 38.7 2.0 28 10-37 1-28 (95)
38 PF08374 Protocadherin: Protoc 68.5 7.7 0.00017 41.0 4.9 24 243-266 35-58 (221)
39 KOG0976 Rho/Rac1-interacting s 66.4 2.2E+02 0.0047 35.9 16.7 35 858-892 504-538 (1265)
40 KOG1962 B-cell receptor-associ 65.9 1.8E+02 0.0039 31.2 14.3 29 802-830 181-209 (216)
41 PF08580 KAR9: Yeast cortical 65.0 1.6E+02 0.0034 37.1 16.0 23 798-820 267-289 (683)
42 PF03229 Alpha_GJ: Alphavirus 64.5 7.9 0.00017 36.8 3.6 18 247-264 84-101 (126)
43 PF01299 Lamp: Lysosome-associ 63.9 6.4 0.00014 44.2 3.6 30 246-275 270-300 (306)
44 PF07204 Orthoreo_P10: Orthore 61.9 1.5 3.3E-05 40.0 -1.5 35 255-290 50-84 (98)
45 PF15345 TMEM51: Transmembrane 59.8 14 0.0003 39.6 4.8 30 244-274 55-85 (233)
46 PF05454 DAG1: Dystroglycan (D 59.8 3 6.5E-05 46.3 0.0 18 241-258 143-160 (290)
47 KOG0260 RNA polymerase II, lar 58.3 4E+02 0.0086 35.3 17.4 13 116-128 1234-1246(1605)
48 PF02480 Herpes_gE: Alphaherpe 58.2 3.3 7.1E-05 48.8 0.0 36 242-277 351-386 (439)
49 PF03302 VSP: Giardia variant- 57.8 6.4 0.00014 45.9 2.3 33 239-271 360-393 (397)
50 PF15176 LRR19-TM: Leucine-ric 57.8 12 0.00027 34.8 3.6 27 242-268 14-40 (102)
51 KOG0132 RNA polymerase II C-te 57.5 1.2E+02 0.0025 38.0 12.5 20 245-264 422-441 (894)
52 COG5185 HEC1 Protein involved 57.3 3E+02 0.0066 32.6 15.1 20 799-818 454-473 (622)
53 KOG0307 Vesicle coat complex C 56.9 3.5E+02 0.0076 35.3 16.9 15 461-475 867-881 (1049)
54 PF05278 PEARLI-4: Arabidopsis 56.7 43 0.00093 36.9 8.1 18 692-710 97-114 (269)
55 PRK15313 autotransport protein 55.7 28 0.0006 44.3 7.3 7 47-53 36-42 (955)
56 PF04108 APG17: Autophagy prot 55.2 4.1E+02 0.0089 31.2 18.7 16 746-761 243-258 (412)
57 PRK15313 autotransport protein 55.1 29 0.00063 44.2 7.3 7 480-486 677-683 (955)
58 PF01034 Syndecan: Syndecan do 53.9 4.3 9.3E-05 34.7 0.0 30 240-269 7-36 (64)
59 PF10577 UPF0560: Uncharacteri 52.3 9.6 0.00021 47.4 2.6 31 243-275 270-303 (807)
60 PF06365 CD34_antigen: CD34/Po 51.1 25 0.00054 37.2 5.0 25 246-270 100-125 (202)
61 PF10147 CR6_interact: Growth 50.6 1.8E+02 0.004 31.1 11.4 55 820-882 152-206 (217)
62 KOG1219 Uncharacterized conser 49.6 14 0.00029 50.7 3.3 43 245-289 3992-4034(4289)
63 KOG1094 Discoidin domain recep 49.1 72 0.0016 38.9 8.9 28 241-268 386-413 (807)
64 PF15347 PAG: Phosphoprotein a 48.5 22 0.00048 40.4 4.4 24 245-268 13-37 (428)
65 PF10234 Cluap1: Clusterin-ass 47.9 3.5E+02 0.0077 30.0 13.4 31 671-701 106-144 (267)
66 PRK14950 DNA polymerase III su 47.9 99 0.0022 38.0 10.4 7 481-487 469-475 (585)
67 KOG4848 Extracellular matrix-a 47.4 2.1E+02 0.0045 29.9 10.7 51 823-881 166-216 (225)
68 cd07593 BAR_MUG137_fungi The B 47.3 79 0.0017 33.8 8.2 18 623-640 8-25 (215)
69 PF05568 ASFV_J13L: African sw 45.9 15 0.00032 36.4 2.2 27 250-276 33-59 (189)
70 PF05393 Hum_adeno_E3A: Human 45.5 28 0.00062 31.6 3.8 30 258-290 43-72 (94)
71 KOG0260 RNA polymerase II, lar 44.2 7.6E+02 0.017 32.9 16.8 19 62-80 1125-1143(1605)
72 PHA03265 envelope glycoprotein 44.2 16 0.00036 41.1 2.6 43 240-285 345-387 (402)
73 PTZ00234 variable surface prot 43.8 2.3E+02 0.0051 33.6 12.0 13 138-150 233-245 (433)
74 COG2956 Predicted N-acetylgluc 43.0 4.4E+02 0.0096 30.2 13.2 77 765-841 282-360 (389)
75 KOG4433 Tweety transmembrane/c 42.9 22 0.00047 41.8 3.4 21 246-266 43-63 (526)
76 PF04478 Mid2: Mid2 like cell 42.9 9.3 0.0002 38.4 0.4 7 260-266 68-74 (154)
77 PF14523 Syntaxin_2: Syntaxin- 42.7 2.4E+02 0.0053 25.7 9.9 22 855-876 75-96 (102)
78 smart00806 AIP3 Actin interact 42.4 76 0.0016 37.1 7.6 70 750-823 246-319 (426)
79 PF04108 APG17: Autophagy prot 42.4 6.3E+02 0.014 29.7 19.2 32 800-831 192-227 (412)
80 PF07213 DAP10: DAP10 membrane 41.9 30 0.00066 31.0 3.4 44 244-290 32-75 (79)
81 PF06013 WXG100: Proteins of 1 41.5 2.1E+02 0.0046 24.4 8.9 66 804-873 8-73 (86)
82 KOG0804 Cytoplasmic Zn-finger 41.3 1.6E+02 0.0034 34.8 9.7 93 739-837 353-451 (493)
83 PF14712 Snapin_Pallidin: Snap 39.8 85 0.0018 28.5 6.2 74 801-875 8-81 (92)
84 PF15102 TMEM154: TMEM154 prot 39.3 25 0.00054 35.2 2.7 7 248-254 58-64 (146)
85 PF05659 RPW8: Arabidopsis bro 39.1 1.5E+02 0.0032 29.9 8.3 87 562-653 37-132 (147)
86 smart00503 SynN Syntaxin N-ter 38.9 3.2E+02 0.007 25.3 11.4 27 801-827 44-70 (117)
87 KOG0307 Vesicle coat complex C 38.5 6.9E+02 0.015 32.8 15.5 21 27-47 525-545 (1049)
88 PRK11637 AmiB activator; Provi 38.5 2.3E+02 0.005 33.3 11.2 19 805-823 108-126 (428)
89 PF09325 Vps5: Vps5 C terminal 38.3 5E+02 0.011 27.4 18.3 68 803-874 166-233 (236)
90 PF12301 CD99L2: CD99 antigen 38.3 3.9E+02 0.0085 27.6 11.2 28 242-269 111-138 (169)
91 PF05399 EVI2A: Ectropic viral 37.9 2.1E+02 0.0046 30.4 9.2 26 242-267 124-149 (227)
92 COG5178 PRP8 U5 snRNP spliceos 37.5 26 0.00056 45.0 3.0 20 737-756 515-534 (2365)
93 COG5178 PRP8 U5 snRNP spliceos 37.0 26 0.00056 45.0 2.9 32 636-673 627-658 (2365)
94 KOG3189 Phosphomannomutase [Li 36.9 67 0.0014 33.9 5.4 48 71-125 62-110 (252)
95 PF01102 Glycophorin_A: Glycop 36.0 29 0.00062 33.8 2.5 34 242-276 64-97 (122)
96 cd00179 SynN Syntaxin N-termin 35.9 4.3E+02 0.0092 25.9 11.4 28 800-827 41-68 (151)
97 PF14991 MLANA: Protein melan- 35.9 7.7 0.00017 36.8 -1.3 11 274-284 48-58 (118)
98 KOG0964 Structural maintenance 35.7 9E+02 0.02 31.6 15.5 33 608-640 664-696 (1200)
99 PF14610 DUF4448: Protein of u 35.2 19 0.00042 37.4 1.4 28 245-272 156-183 (189)
100 PF01690 PLRV_ORF5: Potato lea 34.8 29 0.00063 40.8 2.8 7 593-599 456-462 (465)
101 KOG4302 Microtubule-associated 34.6 1E+03 0.022 29.9 16.0 44 619-664 100-143 (660)
102 PF12252 SidE: Dot/Icm substra 34.4 3.7E+02 0.0079 35.1 12.0 17 600-616 1158-1174(1439)
103 PRK07764 DNA polymerase III su 34.4 3.7E+02 0.008 34.7 12.6 6 469-474 515-520 (824)
104 COG0497 RecN ATPase involved i 33.7 8E+02 0.017 30.2 14.5 55 804-878 322-376 (557)
105 PF10455 BAR_2: Bin/amphiphysi 33.6 7.3E+02 0.016 27.9 15.8 54 804-867 226-279 (289)
106 cd07595 BAR_RhoGAP_Rich-like T 33.5 4.3E+02 0.0094 28.8 11.4 9 656-664 68-76 (244)
107 PF04906 Tweety: Tweety; Inte 33.4 35 0.00076 40.0 3.2 19 801-819 316-334 (406)
108 PF12273 RCR: Chitin synthesis 33.4 19 0.00042 35.1 1.0 13 260-272 9-21 (130)
109 PRK11637 AmiB activator; Provi 32.2 3.2E+02 0.0069 32.1 11.0 36 803-838 99-134 (428)
110 PF05393 Hum_adeno_E3A: Human 31.4 57 0.0012 29.8 3.4 30 247-276 35-64 (94)
111 PF04740 LXG: LXG domain of WX 30.9 6.2E+02 0.013 26.2 12.3 24 848-871 170-193 (204)
112 PF10158 LOH1CR12: Tumour supp 30.5 4E+02 0.0087 26.3 9.5 74 749-833 33-106 (131)
113 PRK04778 septation ring format 30.4 3E+02 0.0065 33.8 10.7 65 764-828 274-338 (569)
114 PF13851 GAS: Growth-arrest sp 30.3 5.3E+02 0.011 27.3 11.1 43 745-787 25-70 (201)
115 COG4477 EzrA Negative regulato 30.0 2.3E+02 0.0051 34.1 9.0 125 750-875 326-464 (570)
116 PF06809 NPDC1: Neural prolife 29.9 98 0.0021 34.8 5.7 25 62-88 61-85 (341)
117 PF03310 Cauli_DNA-bind: Cauli 29.8 1.8E+02 0.0039 28.3 6.7 40 776-815 10-49 (121)
118 COG0339 Dcp Zn-dependent oligo 29.8 2.8E+02 0.0062 34.5 10.0 126 751-881 39-165 (683)
119 KOG0995 Centromere-associated 29.5 1.1E+03 0.025 28.8 19.1 29 613-641 362-390 (581)
120 KOG4403 Cell surface glycoprot 28.0 5.3E+02 0.012 30.3 11.0 22 861-882 357-378 (575)
121 cd00132 CRIB PAK (p21 activate 27.6 48 0.001 26.0 2.1 23 308-331 2-24 (42)
122 PF07544 Med9: RNA polymerase 27.5 4.6E+02 0.01 23.6 9.2 34 757-790 13-46 (83)
123 PF15035 Rootletin: Ciliary ro 27.4 3.3E+02 0.0071 28.4 8.8 32 754-789 88-119 (182)
124 PF07464 ApoLp-III: Apolipopho 27.4 5.8E+02 0.013 25.9 10.3 35 757-791 48-82 (155)
125 PF15050 SCIMP: SCIMP protein 27.4 46 0.001 32.1 2.3 10 247-256 10-19 (133)
126 cd07912 Tweety_N N-terminal do 27.2 42 0.00092 39.4 2.5 7 497-503 149-155 (418)
127 cd07651 F-BAR_PombeCdc15_like 27.2 2.1E+02 0.0046 30.7 7.8 120 751-870 93-230 (236)
128 PF08580 KAR9: Yeast cortical 26.6 1.3E+03 0.027 29.3 15.1 23 849-871 270-292 (683)
129 PF06160 EzrA: Septation ring 26.4 4E+02 0.0086 32.7 10.7 65 764-828 270-334 (560)
130 PF15102 TMEM154: TMEM154 prot 26.2 63 0.0014 32.4 3.1 27 244-271 58-84 (146)
131 cd07596 BAR_SNX The Bin/Amphip 25.7 7.4E+02 0.016 25.4 13.8 130 736-880 1-132 (218)
132 PF03915 AIP3: Actin interacti 25.6 1.9E+02 0.004 34.3 7.3 16 855-870 348-363 (424)
133 cd07653 F-BAR_CIP4-like The F- 25.5 8.1E+02 0.018 26.2 12.0 20 854-873 129-148 (251)
134 PF01544 CorA: CorA-like Mg2+ 24.8 8.1E+02 0.018 26.3 12.0 11 692-702 110-120 (292)
135 PF06363 Picorna_P3A: Picornav 24.6 3.9E+02 0.0085 24.8 7.4 63 801-873 35-98 (100)
136 KOG3091 Nuclear pore complex, 24.5 1.3E+03 0.028 27.8 13.7 200 560-834 294-496 (508)
137 KOG0251 Clathrin assembly prot 24.4 1.7E+02 0.0036 35.3 6.7 72 799-870 218-294 (491)
138 KOG4025 Putative apoptosis rel 23.8 3.1E+02 0.0068 28.1 7.4 77 529-605 31-113 (207)
139 PF09738 DUF2051: Double stran 23.7 5.7E+02 0.012 28.9 10.4 85 736-832 88-172 (302)
140 PRK14720 transcript cleavage f 23.7 8.4E+02 0.018 31.8 13.0 66 625-703 45-111 (906)
141 KOG4500 Rho/Rac GTPase guanine 23.5 1E+02 0.0022 36.3 4.4 57 641-699 323-383 (604)
142 KOG2391 Vacuolar sorting prote 23.2 3.1E+02 0.0067 31.3 8.0 9 593-601 332-340 (365)
143 PF05454 DAG1: Dystroglycan (D 23.0 28 0.0006 38.9 0.0 10 261-270 160-169 (290)
144 PF05478 Prominin: Prominin; 22.8 66 0.0014 41.2 3.2 9 266-274 113-121 (806)
145 KOG4331 Polytopic membrane pro 22.8 56 0.0012 41.0 2.5 25 769-793 706-730 (865)
146 PF10168 Nup88: Nuclear pore c 22.8 1.4E+03 0.031 29.0 14.7 28 848-875 636-663 (717)
147 KOG4460 Nuclear pore complex, 22.6 6.1E+02 0.013 30.8 10.5 60 801-868 613-672 (741)
148 PF00974 Rhabdo_glycop: Rhabdo 22.5 29 0.00062 41.8 0.0 20 252-271 458-477 (501)
149 PF03276 Gag_spuma: Spumavirus 22.3 3.4E+02 0.0074 32.8 8.5 45 118-163 10-56 (582)
150 cd07627 BAR_Vps5p The Bin/Amph 22.1 9.5E+02 0.021 25.4 18.1 68 803-874 146-213 (216)
151 PF04156 IncA: IncA protein; 22.0 5.3E+02 0.012 26.4 9.4 25 807-831 123-147 (191)
152 PF04156 IncA: IncA protein; 21.9 7.2E+02 0.016 25.5 10.3 28 800-827 123-150 (191)
153 PLN03099 PIR Protein PIR; Prov 21.7 1.8E+03 0.039 29.6 15.2 173 523-698 105-305 (1232)
154 PF05749 Rubella_E2: Rubella m 21.6 70 0.0015 32.4 2.5 31 246-276 232-262 (267)
155 PF15065 NCU-G1: Lysosomal tra 21.6 33 0.00072 39.3 0.2 28 245-272 319-346 (350)
156 PHA03283 envelope glycoprotein 21.3 1.3E+02 0.0027 36.2 4.8 17 7-23 1-17 (542)
157 PF14986 DUF4514: Domain of un 21.3 1E+02 0.0022 25.5 2.8 28 243-270 19-46 (61)
158 PF04803 Cor1: Cor1/Xlr/Xmr co 21.1 5.5E+02 0.012 25.3 8.5 38 800-837 43-80 (130)
159 PF03154 Atrophin-1: Atrophin- 20.9 1.9E+03 0.042 28.7 15.0 22 591-612 565-586 (982)
160 PF08359 TetR_C_4: YsiA-like p 20.9 1.2E+02 0.0025 29.1 3.9 12 804-815 4-15 (133)
161 TIGR00383 corA magnesium Mg(2+ 20.8 9.4E+02 0.02 26.7 11.7 12 692-703 134-145 (318)
162 PF03276 Gag_spuma: Spumavirus 20.5 3.7E+02 0.008 32.6 8.3 8 497-504 293-300 (582)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.5e-68 Score=602.03 Aligned_cols=380 Identities=28% Similarity=0.412 Sum_probs=335.8
Q ss_pred CCCCCCCCCcCccccceeccC-CCCCccccccccCccccc--hHHHHhhhcccccccccc----ccCCCCCCCCcccccc
Q 002439 456 GDANAPKTKLKPFFWDKVLAN-PDNSMVWHQIKSGSFQFN--EEMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQII 528 (921)
Q Consensus 456 ~~~~~Pk~klK~l~W~KI~~~-~~~~TIW~~i~~~~~~ld--~e~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~lL 528 (921)
.....|+..||+++|.+|... ..++++|-.++++.+.-| +..|+.-|+.+.+.+.+. .|.+..+++.+...||
T Consensus 617 KK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~il 696 (1102)
T KOG1924|consen 617 KKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRIL 696 (1102)
T ss_pred cccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheec
Confidence 566788999999999999764 468899999998877543 356777798873332211 1112235667788999
Q ss_pred chHHHhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHHHhCCcc
Q 002439 529 DQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPF 606 (921)
Q Consensus 529 D~KraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~l~~Ip~ 606 (921)
|.|.|||++|+|+.|+++++||+.+|+++| .|++.+|++|++.+|..|-+..|+++....+.|.+.|||...|..|.+
T Consensus 697 DsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkr 776 (1102)
T KOG1924|consen 697 DSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKR 776 (1102)
T ss_pred chHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccc
Confidence 999999999999999999999999999987 599999999999999999999999998888999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeecccccccccccc
Q 002439 607 SFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 686 (921)
Q Consensus 607 ~~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks 686 (921)
+..||.+++|+.+|.|.+++|++.|..+..||+|||+|+.|.+||++||.+|||||+|+...+|+||.|+.|.||.|||+
T Consensus 777 L~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKs 856 (1102)
T KOG1924|consen 777 LRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKS 856 (1102)
T ss_pred cChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhc
Q 002439 687 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 766 (921)
Q Consensus 687 ~d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd 766 (921)
+|+|+||||||++.+.+ .|++ +..|.+||++|.+|++++
T Consensus 857 aDqk~TLLHfLae~~e~------------------------------------kypd-----~l~F~ddl~hv~kaSrvn 895 (1102)
T KOG1924|consen 857 ADQKTTLLHFLAEICEE------------------------------------KYPD-----ILKFPDDLEHVEKASRVN 895 (1102)
T ss_pred cchhhHHHHHHHHHHHH------------------------------------hChh-----hhcchhhHHHHHhhcccc
Confidence 99999999999975432 2332 346888999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 002439 767 ADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG 846 (921)
Q Consensus 767 ~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~ 846 (921)
++.+...+..+...+.+.+..+....-.-.++|.|.++|..|.++|.+++..|....-+|+.+++++.+||.-|++|...
T Consensus 896 ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysm 975 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSM 975 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcH
Confidence 99999999999999888776665443334578899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhh
Q 002439 847 LRLFTIVRDFFIMLDKACKQVKDAPKKSTK 876 (921)
Q Consensus 847 ~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k 876 (921)
++||+.+++|-.+|..|.+|+.+.++.++|
T Consensus 976 EEFFaDi~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen 976 EEFFADIRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776663
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.6e-64 Score=581.25 Aligned_cols=375 Identities=35% Similarity=0.526 Sum_probs=332.1
Q ss_pred CCCCCCCcCccccceeccCCCCCccccccccCccccchHHHHhhhccccccccccc-----cCCCCCCCCccccccchHH
Q 002439 458 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKK-----KGSSLDTGPQYIQIIDQKK 532 (921)
Q Consensus 458 ~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~~ld~e~lE~lF~~~~~~k~~~k-----k~~~~~~~~~~v~lLD~Kr 532 (921)
...|+.+||++||+||..+++.+|||+++++.. ++|+++||++|+++...+...+ +.....++.+.++|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 357899999999999999989999999999875 7899999999998643221111 1111234567899999999
Q ss_pred HhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcCC-CCCCChHHHHHHHHhCCcchhh
Q 002439 533 AQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFK 609 (921)
Q Consensus 533 aqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd-~~~L~~aE~Fl~~l~~Ip~~~~ 609 (921)
+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||+|..
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~ 161 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE 161 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999998 59999999999999999999999999887 8999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCCC
Q 002439 610 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG 689 (921)
Q Consensus 610 RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~ 689 (921)
||+||+|+.+|++.+.++++.|.++..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus 162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~ 241 (432)
T smart00498 162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN 241 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhh
Q 002439 690 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADS 769 (921)
Q Consensus 690 k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~ 769 (921)
++|||||||+.|.++++ + +..|.+||..|..|++++ +.
T Consensus 242 k~tLLhylv~~i~~~~p-------------------~----------------------~~~f~~el~~v~~askvs-~~ 279 (432)
T smart00498 242 KTTLLHFLVKIIRKKYP-------------------D----------------------LLDFYSDLHHLDKAKVNL-EQ 279 (432)
T ss_pred CccHHHHHHHHHHHhCh-------------------h----------------------hccchhhhccHHHHHHHH-HH
Confidence 99999999998865431 1 124678899999999999 99
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 002439 770 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRL 849 (921)
Q Consensus 770 L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~f 849 (921)
|..++.+|..++..++..+..-......++.|..+|..|+..|+.++..|....+++...+++++.|||++..+..+.+|
T Consensus 280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef 359 (432)
T smart00498 280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99999999999888765433211122345889999999999999999999999999999999999999999988788999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhh
Q 002439 850 FTIVRDFFIMLDKACKQVKDAPKKST 875 (921)
Q Consensus 850 F~iv~dFl~~l~ka~kEv~~~~kr~~ 875 (921)
|.+|.+|+..|.+|++|+.+..+.++
T Consensus 360 F~~f~~F~~~f~ka~~en~~~~~~e~ 385 (432)
T smart00498 360 FKDFNEFLKEFSKAAEENIKKEEEEE 385 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876554443
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=8.5e-61 Score=542.95 Aligned_cols=364 Identities=37% Similarity=0.563 Sum_probs=307.3
Q ss_pred CCCCCCCCcCccccceeccCCCCCccccccccCc--cccchHHHHhhhccccccccccccCCCCCCCCccccccchHHHh
Q 002439 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGS--FQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQ 534 (921)
Q Consensus 457 ~~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~--~~ld~e~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~lLD~Kraq 534 (921)
....|+.++|++||++|......+|||++++... ..+|.+.+|++|+.+........+.....++++.++|||+||+|
T Consensus 3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr~~ 82 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKRSQ 82 (370)
T ss_dssp -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHHHH
T ss_pred CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccccccccccccccccccchHHHH
Confidence 3457899999999999999899999999998765 46789999999998743322211122345667899999999999
Q ss_pred hHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHHHhCCcchhhHhH
Q 002439 535 NLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLE 612 (921)
Q Consensus 535 Ni~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~l~~Ip~~~~RL~ 612 (921)
||+|+|+++++++++|++||..+|. |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|++||+++.||+
T Consensus 83 ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl~ 162 (370)
T PF02181_consen 83 NIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERLE 162 (370)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCCCCee
Q 002439 613 ALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTT 692 (921)
Q Consensus 613 ~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~t 692 (921)
||+|+.+|++++.++.+.|+.+..||++|++|..|+.+|++||++|||||+|+.+|+|.||+|++|.||.+||++|+++|
T Consensus 163 ~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~t 242 (370)
T PF02181_consen 163 ALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTT 242 (370)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhH
Q 002439 693 LLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTG 772 (921)
Q Consensus 693 LLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~ 772 (921)
||||||+.+.++ ..+ +..+.+||..|..|+++|++.|..
T Consensus 243 LL~~l~~~~~~~-------------------~~~----------------------~~~~~~eL~~v~~a~~~~~~~l~~ 281 (370)
T PF02181_consen 243 LLHYLVKIVEEK-------------------FPD----------------------LLDLEDELSSVEKASKVSLDELEQ 281 (370)
T ss_dssp HHHHHHHHHHTT-------------------SGG----------------------GGGHHHHTTTHHHCCTS-HHHHHH
T ss_pred HHHHHHHHHHhc-------------------ChH----------------------HhccHHHHhhHHhhhhhhHHHHHH
Confidence 999999876432 111 224668899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchh
Q 002439 773 TVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTI 852 (921)
Q Consensus 773 ~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~i 852 (921)
++.+|..++..++..++......+.++.|...|..|++.++.++..|.+.+.++.+.+++++.|||++..+..+++||++
T Consensus 282 ~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~ 361 (370)
T PF02181_consen 282 DIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKI 361 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 99999999999998887554445667899999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHH
Q 002439 853 VRDFFIMLD 861 (921)
Q Consensus 853 v~dFl~~l~ 861 (921)
|.+|+.+|+
T Consensus 362 l~~F~~~fk 370 (370)
T PF02181_consen 362 LSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999885
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.5e-49 Score=489.91 Aligned_cols=428 Identities=39% Similarity=0.574 Sum_probs=367.6
Q ss_pred CCCCCCcCccccceeccCCCCCccccccccCccccch---HHHHhhhccccccc--cc--cccCCCCCCCCccccccchH
Q 002439 459 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNE---EMIETLFGYSEKSK--NE--KKKGSSLDTGPQYIQIIDQK 531 (921)
Q Consensus 459 ~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~~ld~---e~lE~lF~~~~~~k--~~--~kk~~~~~~~~~~v~lLD~K 531 (921)
..|+.+++++||+++..+....++|+.+....+.+|. +++|.+|++..... .. ...+.......+.+.++|.+
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 5789999999999999999999999999999888887 99999998762211 11 01111111222678999999
Q ss_pred HHhhHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHH-HhCCcchh
Q 002439 532 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA-LVDIPFSF 608 (921)
Q Consensus 532 raqNi~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~-l~~Ip~~~ 608 (921)
++||++|+|+.+++..++++++|++++. +..++|+.|.++.|+.+|...++.|.++...|+..|+|+.+ +..|++++
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~ 549 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE 549 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence 9999999999999999999999999876 99999999999999999999999999988999999999887 56799999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCC
Q 002439 609 KRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 688 (921)
Q Consensus 609 ~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d 688 (921)
.|+++++|+..|.+++..+...+.+++.||+++++++.|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus 550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~ 629 (833)
T KOG1922|consen 550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD 629 (833)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchh
Q 002439 689 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDAD 768 (921)
Q Consensus 689 ~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d 768 (921)
+++++||+++.++++.+|.+.. ...+.|+.+|++.|.+|..||.+|++|+++|++
T Consensus 630 ~~~~~l~~~~~e~~~~~~~r~~-------------------------~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~ 684 (833)
T KOG1922|consen 630 GKTTLLHFVVPEVVRSEGKRSV-------------------------IDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE 684 (833)
T ss_pred ccchhhhhhHHHHHHhhccccc-------------------------hhhhhhhhccchhhhcccchhcccchhhccCHH
Confidence 9999999999999988765532 134568889999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHh-hhhcc-cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccc
Q 002439 769 SLTGTVSKLGHALLKTRDFLN-TDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KDE 845 (921)
Q Consensus 769 ~L~~~v~kL~~~l~k~~~~l~-~~~k~-~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~-k~~ 845 (921)
.+..++.+|..++.++++.+. ..... ...++.|...|..|+..|+.++..+..++++++.+++.+++|||++.. +..
T Consensus 685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~ 764 (833)
T KOG1922|consen 685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT 764 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 999999999999999999885 33322 346789999999999999999999999999999999999999999984 566
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCCCCCCchhhhhhchhhhhccCCCCCCC
Q 002439 846 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSD 918 (921)
Q Consensus 846 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~e~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~ 918 (921)
..++|.++++|+.+++++|+|++++++++... +. ...+. ......+....++.+..+|.-++.+++
T Consensus 765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (833)
T KOG1922|consen 765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY---EA---EEKRA-NKEAELEELKNISQAVSKRTSDSESSL 830 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cc---ccccc-ccccccccccccccccccccccccccc
Confidence 78999999999999999999999999887533 10 00011 111233455666777777766554443
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.4e-49 Score=451.80 Aligned_cols=369 Identities=23% Similarity=0.313 Sum_probs=320.8
Q ss_pred CCCCCCCCCCCcCccccceeccCCCCCccccccccCcc--ccchHHHHhhhccccccccc----cccCCCCCCCCccccc
Q 002439 454 AEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE----KKKGSSLDTGPQYIQI 527 (921)
Q Consensus 454 ~~~~~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~--~ld~e~lE~lF~~~~~~k~~----~kk~~~~~~~~~~v~l 527 (921)
+-......|.++-.++|..+..+.+.+|+++++.+..+ ++|++++|+.|.....+... ..+.....+..+++++
T Consensus 360 ~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tL 439 (830)
T KOG1923|consen 360 TIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTL 439 (830)
T ss_pred hhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhH
Confidence 34555667778889999999999999999999987765 47999999999763111110 0111123355788999
Q ss_pred cchHHHhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcC---CCCCCChHHHHHHHHh
Q 002439 528 IDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNG---ELSQLGPAERFLKALV 602 (921)
Q Consensus 528 LD~KraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~g---d~~~L~~aE~Fl~~l~ 602 (921)
+|.+|++|++|.++ +.+..++|+.||...| .|..+.++.|.+++||++|...+++|.. +...|++.|+|++.+.
T Consensus 440 le~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~ls 518 (830)
T KOG1923|consen 440 LEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLS 518 (830)
T ss_pred HHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhh
Confidence 99999999999999 9999999999998776 6999999999999999999999998864 4578999999999999
Q ss_pred CCcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeecccccccc
Q 002439 603 DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS 682 (921)
Q Consensus 603 ~Ip~~~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~ 682 (921)
.|.++++||..|-|+.+|.+.+.-+.+++..++.|.+.+++|++|+.+|++||++|||||.+. ||.++||+|.+|.-|.
T Consensus 519 kIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD~ll 597 (830)
T KOG1923|consen 519 KIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLL 597 (830)
T ss_pred hhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999986 8999999999999999
Q ss_pred ccccCCCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHh
Q 002439 683 DVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKA 762 (921)
Q Consensus 683 d~Ks~d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kA 762 (921)
++|++|.+.|||||++..+.+ .|.. +..|.+||..|+||
T Consensus 598 ~tkStDr~~tLlh~iv~~i~e------------------------------------klp~-----l~~F~~el~~~eKa 636 (830)
T KOG1923|consen 598 DTKSTDRSMTLLHYIVLTIAE------------------------------------KLPA-----LQLFFSELDFVEKA 636 (830)
T ss_pred hccCCccceeeeehhhHHHHH------------------------------------hhHH-----HHhhHHHhhccchh
Confidence 999999999999999975532 2222 34688899999999
Q ss_pred hhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 002439 763 AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG 842 (921)
Q Consensus 763 a~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~ 842 (921)
+.++++.+..+|.+|..++..++...+... . ...|++|+++.+..+.+|+++.+.+.+.|+.+++|||++.+
T Consensus 637 ~av~lesV~~Dv~eL~~g~~l~~kE~e~~~------~--~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk 708 (830)
T KOG1923|consen 637 TAVQLESVLADVKELNAGMTLAEKETEREG------L--DVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPK 708 (830)
T ss_pred hhhhhhccchhHHHHHhHHHHHHHHHhhhc------c--chHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCC
Confidence 999999999999999999998886655322 1 16899999999999999999999999999999999988888
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439 843 KDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 843 k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr 873 (921)
...+.-||..|..|..+|.++..|++...+.
T Consensus 709 ~tppt~ff~~f~~F~~~~k~~~~ene~k~~l 739 (830)
T KOG1923|consen 709 TTPPTVFFQLFVRFVRAYKMARQENEQKKKL 739 (830)
T ss_pred CCCCCccHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 8888999999999999999999888765553
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.5e-41 Score=367.16 Aligned_cols=363 Identities=24% Similarity=0.320 Sum_probs=299.6
Q ss_pred CCCCCcCccccceeccC--------CCCCccccccccCccccchHHHHhhhccccccccccccCCCCCCCCccccccchH
Q 002439 460 APKTKLKPFFWDKVLAN--------PDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQK 531 (921)
Q Consensus 460 ~Pk~klK~l~W~KI~~~--------~~~~TIW~~i~~~~~~ld~e~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~lLD~K 531 (921)
..+++.-.+||..+... ...+|+|+.++... +|...|+.||..+.++....||. .+.+.+..+|||.|
T Consensus 279 ~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~P~KK~--~E~r~~~~tVL~~K 354 (817)
T KOG1925|consen 279 PTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVLPSKKA--GEGRRTMTTVLDPK 354 (817)
T ss_pred cccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhccchhh--cccceeeeeecCcc
Confidence 34566778999876532 34679999997643 79999999998763222122221 23455688999999
Q ss_pred HHhhHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhh--cCCCCCCChHHHHHHHHhCCcch
Q 002439 532 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLF--NGELSQLGPAERFLKALVDIPFS 607 (921)
Q Consensus 532 raqNi~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~--~gd~~~L~~aE~Fl~~l~~Ip~~ 607 (921)
|+|.|+|.|.+|. +..-|..||++.|+ ++.+.|+.|++|+||++|++++... .+..-.||.+|||++.|+.|+.+
T Consensus 355 Rt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L 433 (817)
T KOG1925|consen 355 RTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGL 433 (817)
T ss_pred cccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHH
Confidence 9999999999987 56778889998885 7999999999999999999998654 34456899999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccC
Q 002439 608 FKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV 687 (921)
Q Consensus 608 ~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~ 687 (921)
..||+.|.|+..|+..-.+|.+.|-.+..++++|.+++.|+-+|..+|+||||||+. +++||.|+.|.|..++|++
T Consensus 434 ~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKDt 509 (817)
T KOG1925|consen 434 AARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKDT 509 (817)
T ss_pred HHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcch
Confidence 999999999999999999999999999999999999999999999999999999986 5899999999999999999
Q ss_pred CCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhch
Q 002439 688 DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDA 767 (921)
Q Consensus 688 d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~ 767 (921)
-.|.||||+|+..+++. |+ +. +.|.+|+..|.+.|+||+
T Consensus 510 V~KqsLlhHlc~~vVE~--------------Fp---------------es------------sDLYSEiGA~tRSAkVDf 548 (817)
T KOG1925|consen 510 VRKQSLLHHLCSLVVET--------------FP---------------ES------------SDLYSEIGALTRSAKVDF 548 (817)
T ss_pred HHHHHHHHHHHHHHHHh--------------CC---------------cc------------hhHHHHhHhhhhhhhccH
Confidence 99999999999887753 21 22 235567888999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---cc
Q 002439 768 DSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG---KD 844 (921)
Q Consensus 768 d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~---k~ 844 (921)
++|...+..|++.+...++-|.. +.+.+-..-.+..|..|++++.++|..|...+.++.+.|.+.+.|||-... ..
T Consensus 549 ~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev 627 (817)
T KOG1925|consen 549 EQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREV 627 (817)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Confidence 99999999999999999887753 322233345788999999999999999999999999999999999975443 33
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439 845 EGLRLFTIVRDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 845 ~~~~fF~iv~dFl~~l~ka~kEv~~~~kr 873 (921)
...+||.++++|.-.|......|-+-++|
T Consensus 628 ~iN~fc~~~~EFaLEYRTTRervLQQ~qk 656 (817)
T KOG1925|consen 628 RINQFCHTLREFALEYRTTRERVLQQQQK 656 (817)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46889999999998887666555444333
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=3.7e-09 Score=123.23 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=17.5
Q ss_pred CCCCCCcCccccceeccCCCC-Ccccccc
Q 002439 459 NAPKTKLKPFFWDKVLANPDN-SMVWHQI 486 (921)
Q Consensus 459 ~~Pk~klK~l~W~KI~~~~~~-~TIW~~i 486 (921)
..|..-...-+|.++..++.. ..+++.+
T Consensus 634 I~p~d~s~~cFWvkv~Edk~en~dlfakL 662 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKVNEDKLENDDLFAKL 662 (1102)
T ss_pred cCccccCccceeeecchhhccchHHHHHH
Confidence 445555678899999876633 3344443
No 8
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=3.3e-07 Score=103.39 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCcccccccCCCCCCCCcCCCCCCCCCCCCC
Q 002439 301 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN 331 (921)
Q Consensus 301 ~s~~~K~g~~s~~~~~~~~~~~~~~~~~~~~ 331 (921)
+++..|.+++.+.++.|+.||||+...+|+.
T Consensus 228 ksk~tk~disaPtnf~h~~hVgwd~~~gf~~ 258 (569)
T KOG3671|consen 228 KSKITKADISAPTNFPHIPHVGWDEQVGFDS 258 (569)
T ss_pred ccccccccCCCCCCCccccccCCCcCCCccc
Confidence 4578899999999999999999999998885
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=98.41 E-value=4.1e-05 Score=99.87 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=5.8
Q ss_pred HHHHhhhhh
Q 002439 59 LLWFSCGID 67 (921)
Q Consensus 59 ~~w~~c~~d 67 (921)
+.||+-..|
T Consensus 2534 ~~w~~glEe 2542 (3151)
T PHA03247 2534 LTWIRGLEE 2542 (3151)
T ss_pred hhhhhhhhh
Confidence 358876665
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=98.29 E-value=0.00025 Score=93.02 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=5.0
Q ss_pred hhhhhccCCCcc
Q 002439 39 DFLCKVVDPVTG 50 (921)
Q Consensus 39 ~~~~~~~~~~~~ 50 (921)
++.-.+||.-.|
T Consensus 2330 ~Lc~~LFDSR~g 2341 (3151)
T PHA03247 2330 ELCVTLFDSRAR 2341 (3151)
T ss_pred eehhhhhcCCCC
Confidence 333444444433
No 11
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=97.75 E-value=0.0001 Score=86.19 Aligned_cols=113 Identities=29% Similarity=0.351 Sum_probs=89.9
Q ss_pred HHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCC---CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 756 LENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN---SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKS 832 (921)
Q Consensus 756 L~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~---~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~ 832 (921)
+....++|..+++.|...+.++...+.++.+++..+.+....+ ..|.+-|..|...+++.+..+.++.++.+.++++
T Consensus 315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~ 394 (432)
T smart00498 315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKE 394 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444888899999999999999999999998886655432112 2455666777777777788888888899999999
Q ss_pred hccccccccc--cccccccchhHHHHHHHHHHHHHHHH
Q 002439 833 TGDYFHGNAG--KDEGLRLFTIVRDFFIMLDKACKQVK 868 (921)
Q Consensus 833 ~~~yF~g~~~--k~~~~~fF~iv~dFl~~l~ka~kEv~ 868 (921)
+++||++... +..+..+|.+++||+.++|++|++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 395 TTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred HHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 9999998653 34568899999999999999999874
No 12
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.43 E-value=0.0021 Score=73.38 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=4.0
Q ss_pred HHHhhhcCc
Q 002439 72 KEVVEDLNL 80 (921)
Q Consensus 72 ~~~~~~~~~ 80 (921)
+|.-.+|+|
T Consensus 93 qELY~nf~y 101 (569)
T KOG3671|consen 93 QELYQNFEY 101 (569)
T ss_pred HHhhhhcee
Confidence 344444444
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.86 E-value=0.068 Score=64.46 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=23.7
Q ss_pred HHHHHHHhcHHHHHHHHHHHHhcccccCCCCC
Q 002439 636 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFR 667 (921)
Q Consensus 636 ~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~r 667 (921)
...++.|.-+...+++-.+..|+|.=-.|..-
T Consensus 555 ~s~k~sr~lr~VleiILA~gNymns~kRg~ay 586 (830)
T KOG1923|consen 555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAAY 586 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccccccc
Confidence 44556666777778888899999988777643
No 14
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.83 E-value=0.27 Score=55.64 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=5.0
Q ss_pred hHHHHHhhc
Q 002439 535 NLSIMLRAL 543 (921)
Q Consensus 535 Ni~I~L~~l 543 (921)
+..|+++++
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 455666554
No 15
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=94.61 E-value=0.22 Score=51.39 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=7.4
Q ss_pred CcceehhhhHHHHHH
Q 002439 244 HNTVIIAVVVTAAVT 258 (921)
Q Consensus 244 ~~~~ii~v~vta~~~ 258 (921)
...+|++|+++++++
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 344555565554433
No 16
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=94.08 E-value=0.041 Score=54.61 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=15.8
Q ss_pred CcceehhhhHHHHHH--HHHHHHHHHHhccc
Q 002439 244 HNTVIIAVVVTAAVT--FVAAALLFLCCSRF 272 (921)
Q Consensus 244 ~~~~ii~v~vta~~~--~v~a~llf~~c~~~ 272 (921)
++++||||+||..+. +++++|+|+||.|+
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRR 77 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEec
Confidence 346889998874333 33344444444443
No 17
>PHA03291 envelope glycoprotein I; Provisional
Probab=92.95 E-value=0.66 Score=51.68 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=28.6
Q ss_pred CCCCCCCcceehhhhHHHHHHHHHHHHHHHHhcc-cccCCCCCCCCCCCC
Q 002439 238 DDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSR-FCRTGSGGRQNDERP 286 (921)
Q Consensus 238 ~~~~~~~~~~ii~v~vta~~~~v~a~llf~~c~~-~~~~~~~~~~~Dd~p 286 (921)
++.+....+-||-++|.|.++.+++-=-|.||.- +||++++.+.+-++|
T Consensus 278 ~sr~~Lt~~qiiQiAIPasii~cV~lGSC~Ccl~R~~rRr~r~~~~IY~P 327 (401)
T PHA03291 278 ASRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRP 327 (401)
T ss_pred hhhhhhhhhhhheeccchHHHHHhhhhhhhhhhhhhhhcccCCcCcccCC
Confidence 5667778888999999777555444434555443 333334444444444
No 18
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.49 E-value=0.11 Score=40.17 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=17.4
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHHHhc
Q 002439 240 KTNHHNTVIIAVVVTAAVTFVAAALLFLCCS 270 (921)
Q Consensus 240 ~~~~~~~~ii~v~vta~~~~v~a~llf~~c~ 270 (921)
+++...++.+||++..++++++++++|+++.
T Consensus 6 ~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 6 SNSNTVAIAVGVVVPVGVIIIVLGAFLFFWY 36 (40)
T ss_pred CCCceEEEEEEEEechHHHHHHHHHHhheEE
Confidence 3344456667777766665555554444333
No 19
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=90.53 E-value=1.5 Score=45.13 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=10.3
Q ss_pred cceehhhhHHHHHHHHHH
Q 002439 245 NTVIIAVVVTAAVTFVAA 262 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a 262 (921)
+.++++|+++.++.+|++
T Consensus 74 ~~~~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAI 91 (179)
T ss_pred ccceeeeeeehhhHHHHH
Confidence 456667776666534333
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.95 E-value=0.44 Score=46.12 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=19.5
Q ss_pred CCCCcceehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 241 ~~~~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
|.-...+|+++++|+++.+|+++||+++|+||.||+
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445677777776666666666664444444433
No 21
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=85.68 E-value=0.86 Score=54.67 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=20.1
Q ss_pred CCcceehhhhHHHHHHHHHHHHHHHHhccc
Q 002439 243 HHNTVIIAVVVTAAVTFVAAALLFLCCSRF 272 (921)
Q Consensus 243 ~~~~~ii~v~vta~~~~v~a~llf~~c~~~ 272 (921)
.+.-+||||++..+++++++++++||||++
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 345667888877776666666666666643
No 22
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=84.08 E-value=0.77 Score=40.70 Aligned_cols=27 Identities=22% Similarity=0.647 Sum_probs=15.2
Q ss_pred ehhhhHHHHHHHHHHHHHHHHhccccc
Q 002439 248 IIAVVVTAAVTFVAAALLFLCCSRFCR 274 (921)
Q Consensus 248 ii~v~vta~~~~v~a~llf~~c~~~~~ 274 (921)
|++++++|++++++++++++||.++|+
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred EEehHHHHHHHHHHhheeEEEEEeeEc
Confidence 556666666666655555666665544
No 23
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=82.98 E-value=1.5 Score=33.55 Aligned_cols=8 Identities=13% Similarity=0.588 Sum_probs=3.1
Q ss_pred HHHHhccc
Q 002439 265 LFLCCSRF 272 (921)
Q Consensus 265 lf~~c~~~ 272 (921)
+++-||.|
T Consensus 24 ~~YaCcyk 31 (38)
T PF02439_consen 24 FYYACCYK 31 (38)
T ss_pred HHHHHHHc
Confidence 33334433
No 24
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=82.01 E-value=16 Score=41.95 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=6.4
Q ss_pred CCCHHHHHHhhh
Q 002439 544 NVTLEEVCDALL 555 (921)
Q Consensus 544 k~s~eei~~aI~ 555 (921)
+++.++...+++
T Consensus 469 ~vtkDDaY~~FM 480 (487)
T KOG4672|consen 469 KVTKDDAYNAFM 480 (487)
T ss_pred CCcchHHHHHHH
Confidence 345566555554
No 25
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=81.71 E-value=5.7 Score=39.21 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCCCcceehhhhHHHHHHHHHHHHHHHHhc
Q 002439 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCS 270 (921)
Q Consensus 241 ~~~~~~~ii~v~vta~~~~v~a~llf~~c~ 270 (921)
+..+.++|-||+.+.++++.+++.+|+|+|
T Consensus 56 ~~lsgtAIaGIVfgiVfimgvva~i~icvC 85 (155)
T PF10873_consen 56 DVLSGTAIAGIVFGIVFIMGVVAGIAICVC 85 (155)
T ss_pred cccccceeeeeehhhHHHHHHHHHHHHHHh
Confidence 345678999999888888777766666544
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.69 E-value=55 Score=42.30 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcccccCCC
Q 002439 647 FLKLLEAVLKTGNRMNDGT 665 (921)
Q Consensus 647 f~~lL~~VL~iGN~lN~gt 665 (921)
.+++-.+|-.++|||+..+
T Consensus 1470 ~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3444556778899999865
No 27
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=81.53 E-value=0.55 Score=40.00 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=0.0
Q ss_pred ceehhhhHHHHHHHHHHHHHHHH
Q 002439 246 TVIIAVVVTAAVTFVAAALLFLC 268 (921)
Q Consensus 246 ~~ii~v~vta~~~~v~a~llf~~ 268 (921)
.++.||++++++.++++++|++|
T Consensus 9 ~vlaavIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLILF 31 (64)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556655555555555544
No 28
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=79.77 E-value=0.83 Score=42.44 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=18.1
Q ss_pred CCCCcceehhhhHHHHHHH-HHHHHHHHHhc
Q 002439 241 TNHHNTVIIAVVVTAAVTF-VAAALLFLCCS 270 (921)
Q Consensus 241 ~~~~~~~ii~v~vta~~~~-v~a~llf~~c~ 270 (921)
.+.++.+|+|++|++++++ +++++|+|++.
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFLCWWFV 91 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHHhheeE
Confidence 3455678888888776554 34445554443
No 29
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=79.08 E-value=57 Score=36.81 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=5.5
Q ss_pred cchHHHHhhh
Q 002439 493 FNEEMIETLF 502 (921)
Q Consensus 493 ld~e~lE~lF 502 (921)
+.+.+||+..
T Consensus 357 lSeAEFEdiM 366 (498)
T KOG4849|consen 357 LSEAEFEDIM 366 (498)
T ss_pred chHHHHHHHH
Confidence 4455566654
No 30
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=78.17 E-value=0.68 Score=54.40 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=0.0
Q ss_pred cceehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 245 NTVIIAVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
..+++++++++++++++++++|+||.++++++
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~vc~~~rrrR 382 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVWVCLRCRRRR 382 (439)
T ss_dssp --------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhheeeeehhcc
Confidence 35666666666666666666665555444433
No 31
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=78.09 E-value=3.4 Score=55.11 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=3.9
Q ss_pred ccccccc
Q 002439 481 MVWHQIK 487 (921)
Q Consensus 481 TIW~~i~ 487 (921)
.+|..+.
T Consensus 1763 s~W~Ri~ 1769 (2039)
T PRK15319 1763 SVWARFK 1769 (2039)
T ss_pred CeEEEEe
Confidence 4666554
No 32
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=77.99 E-value=2.2e+02 Score=36.67 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=20.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHhcccccC
Q 002439 635 EVACKELRNSRLFLKLLEAVLKTGNRMND 663 (921)
Q Consensus 635 ~~A~~el~~S~~f~~lL~~VL~iGN~lN~ 663 (921)
..+....+....++.+.+++...|++++.
T Consensus 624 d~ks~~~~~~~l~~~~~e~~~~~~~r~~~ 652 (833)
T KOG1922|consen 624 DVKSSDGKTTLLHFVVPEVVRSEGKRSVI 652 (833)
T ss_pred hhhcccccchhhhhhHHHHHHhhccccch
Confidence 33333344466677889999999998884
No 33
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=76.42 E-value=2.6 Score=41.67 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.4
Q ss_pred CCCCCcceehhhhHHHHHHHHHHH
Q 002439 240 KTNHHNTVIIAVVVTAAVTFVAAA 263 (921)
Q Consensus 240 ~~~~~~~~ii~v~vta~~~~v~a~ 263 (921)
++++++++|+|++||+++++++++
T Consensus 114 ~~gY~nklilaisvtvv~~iliii 137 (154)
T PF14914_consen 114 GYGYNNKLILAISVTVVVMILIII 137 (154)
T ss_pred cccccchhHHHHHHHHHHHHHHHH
Confidence 567888999999999987665554
No 34
>PF15069 FAM163: FAM163 family
Probab=76.35 E-value=2.4 Score=41.81 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=20.8
Q ss_pred cceehhhhHHHHHHHHHHHHHHHHh
Q 002439 245 NTVIIAVVVTAAVTFVAAALLFLCC 269 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~llf~~c 269 (921)
+-||.|-.++.+++++++++||+|+
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHh
Confidence 4577888888888999999999885
No 35
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=73.05 E-value=1.3e+02 Score=34.00 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=2.6
Q ss_pred cccccC
Q 002439 305 EKLDIG 310 (921)
Q Consensus 305 ~K~g~~ 310 (921)
.|+|++
T Consensus 181 ~~~~~~ 186 (498)
T KOG4849|consen 181 KKKGFE 186 (498)
T ss_pred cCCCcc
Confidence 344444
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.36 E-value=2.8e+02 Score=36.45 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=13.3
Q ss_pred HHHHHHHhh-hcCCCCCCChHHHHHHHH
Q 002439 575 AEEELKLRL-FNGELSQLGPAERFLKAL 601 (921)
Q Consensus 575 ~eE~~~l~~-~~gd~~~L~~aE~Fl~~l 601 (921)
.++++.|.. .....+.|...|..+...
T Consensus 1510 peqi~~L~~~I~e~v~sL~nVd~IL~~T 1537 (1758)
T KOG0994|consen 1510 PEQIQQLTGEIQERVASLPNVDAILSRT 1537 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 444444422 223345677777665444
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.63 E-value=3 Score=38.72 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=21.4
Q ss_pred cccchHHHHHHHHHhhhhcchhhhcchh
Q 002439 10 MRRSCFMFLVVLLYGSLVVSSEYRRTRE 37 (921)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (921)
|.++.|+||.|+|+++++||+|..-|..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 4577788888888888999998655433
No 38
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=68.52 E-value=7.7 Score=40.96 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=13.2
Q ss_pred CCcceehhhhHHHHHHHHHHHHHH
Q 002439 243 HHNTVIIAVVVTAAVTFVAAALLF 266 (921)
Q Consensus 243 ~~~~~ii~v~vta~~~~v~a~llf 266 (921)
...+++|||++|+++.++++.+..
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHH
Confidence 455677777776554444433333
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.37 E-value=2.2e+02 Score=35.85 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCC
Q 002439 858 IMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTP 892 (921)
Q Consensus 858 ~~l~ka~kEv~~~~kr~~k~~k~e~~~~~s~~~~~ 892 (921)
..+.+.+-|++.+..+.+++.+......+|..+.+
T Consensus 504 EeiQethldyR~els~lA~r~ag~h~adssqrdse 538 (1265)
T KOG0976|consen 504 EEIQETHLDYRSELSELAHRKAGDHPADSSQRDSE 538 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccHH
Confidence 44566666666666665554444444444444443
No 40
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.88 E-value=1.8e+02 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 802 HETLKSFVQNAEGDIMWLLEEEKRIMSLV 830 (921)
Q Consensus 802 ~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~ 830 (921)
...|+.-.+.-..+.+.|.|++.++.+.+
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33566566666667777777777666555
No 41
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=65.03 E-value=1.6e+02 Score=37.06 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=11.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHH
Q 002439 798 NSGFHETLKSFVQNAEGDIMWLL 820 (921)
Q Consensus 798 ~~~F~~~m~~Fl~~A~~~v~~L~ 820 (921)
|+++...+..-..++...++.+.
T Consensus 267 edRW~~vFr~l~~q~~~m~esve 289 (683)
T PF08580_consen 267 EDRWNIVFRNLGRQAQKMCESVE 289 (683)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444443
No 42
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=64.46 E-value=7.9 Score=36.81 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=11.7
Q ss_pred eehhhhHHHHHHHHHHHH
Q 002439 247 VIIAVVVTAAVTFVAAAL 264 (921)
Q Consensus 247 ~ii~v~vta~~~~v~a~l 264 (921)
-+++++||++..++++++
T Consensus 84 ~aLp~VIGGLcaL~Laam 101 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAM 101 (126)
T ss_pred cchhhhhhHHHHHHHHHH
Confidence 456788887766655543
No 43
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=63.88 E-value=6.4 Score=44.17 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=19.2
Q ss_pred ceehhhhHHHHHHH-HHHHHHHHHhcccccC
Q 002439 246 TVIIAVVVTAAVTF-VAAALLFLCCSRFCRT 275 (921)
Q Consensus 246 ~~ii~v~vta~~~~-v~a~llf~~c~~~~~~ 275 (921)
..+|.|+||++++. |+++|+.||+.||+++
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 67888888777554 4444555777665443
No 44
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=61.93 E-value=1.5 Score=40.04 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcccc
Q 002439 255 AAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSL 290 (921)
Q Consensus 255 a~~~~v~a~llf~~c~~~~~~~~~~~~~Dd~plL~l 290 (921)
|.+++++++.+++||+ -|+|..-.|..-+|-|+.|
T Consensus 50 G~iLilIii~Lv~CC~-~K~K~~~~r~~~~reLval 84 (98)
T PF07204_consen 50 GLILILIIIALVCCCR-AKHKTSAARNTFHRELVAL 84 (98)
T ss_pred hhhhHHHHHHHHHHhh-hhhhhHhhhhHHHHHHHHH
Confidence 3333333333334333 3343333333334444433
No 45
>PF15345 TMEM51: Transmembrane protein 51
Probab=59.80 E-value=14 Score=39.60 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=14.0
Q ss_pred Ccceehhhh-HHHHHHHHHHHHHHHHhccccc
Q 002439 244 HNTVIIAVV-VTAAVTFVAAALLFLCCSRFCR 274 (921)
Q Consensus 244 ~~~~ii~v~-vta~~~~v~a~llf~~c~~~~~ 274 (921)
+++..||.+ ||+.++ +++.-+|++.+.|+|
T Consensus 55 sKt~SVAyVLVG~Gv~-LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 55 SKTFSVAYVLVGSGVA-LLLLSICLSIRDKRR 85 (233)
T ss_pred ceeEEEEEehhhHHHH-HHHHHHHHHHHHHHH
Confidence 334444443 344433 333346776665444
No 46
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=59.78 E-value=3 Score=46.34 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCcceehhhhHHHHHH
Q 002439 241 TNHHNTVIIAVVVTAAVT 258 (921)
Q Consensus 241 ~~~~~~~ii~v~vta~~~ 258 (921)
.....++|++|+|+++.+
T Consensus 143 d~yL~T~IpaVVI~~iLL 160 (290)
T PF05454_consen 143 DDYLHTFIPAVVIAAILL 160 (290)
T ss_dssp ------------------
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 456677888888766643
No 47
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=58.32 E-value=4e+02 Score=35.30 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhcc
Q 002439 116 LKQTLLHCIRENN 128 (921)
Q Consensus 116 ~k~~~l~cl~~~~ 128 (921)
....||-||-.|-
T Consensus 1234 e~D~~l~~Ie~~m 1246 (1605)
T KOG0260|consen 1234 EDDVFLKCIEANM 1246 (1605)
T ss_pred chhHHHHHHHHhh
Confidence 4455555555443
No 48
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=58.22 E-value=3.3 Score=48.82 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHHhcccccCCC
Q 002439 242 NHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGS 277 (921)
Q Consensus 242 ~~~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~~ 277 (921)
.....+++..++++++++++++++|++|+++++...
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 344444444455566667777778877777777665
No 49
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=57.81 E-value=6.4 Score=45.88 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCCCcceehhhhHHHHHHH-HHHHHHHHHhcc
Q 002439 239 DKTNHHNTVIIAVVVTAAVTF-VAAALLFLCCSR 271 (921)
Q Consensus 239 ~~~~~~~~~ii~v~vta~~~~-v~a~llf~~c~~ 271 (921)
++.+.++.+|+||+|++++++ -|+.+|+||+..
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~c 393 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFIC 393 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhheee
Confidence 344678899999999877554 466666665543
No 50
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=57.78 E-value=12 Score=34.78 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHH
Q 002439 242 NHHNTVIIAVVVTAAVTFVAAALLFLC 268 (921)
Q Consensus 242 ~~~~~~ii~v~vta~~~~v~a~llf~~ 268 (921)
+.+-..++||+++|+++=+++++..=|
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344469999999999887777776644
No 51
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=57.51 E-value=1.2e+02 Score=38.04 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=8.5
Q ss_pred cceehhhhHHHHHHHHHHHH
Q 002439 245 NTVIIAVVVTAAVTFVAAAL 264 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~l 264 (921)
+|+.||=+-.-+.--.|+-+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~ 441 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANL 441 (894)
T ss_pred eeeeeccccchhhHHHHHHH
Confidence 44555544443333344443
No 52
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.30 E-value=3e+02 Score=32.64 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=14.5
Q ss_pred CchhhhHHHHHHHHHHHHHH
Q 002439 799 SGFHETLKSFVQNAEGDIMW 818 (921)
Q Consensus 799 ~~F~~~m~~Fl~~A~~~v~~ 818 (921)
.+..+++..|+.+...++..
T Consensus 454 sg~~~~I~~~i~eln~~i~~ 473 (622)
T COG5185 454 SGINESIKKSILELNDEIQE 473 (622)
T ss_pred cCchHhHHHHHHHHhHHHHH
Confidence 45678888888877776654
No 53
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.91 E-value=3.5e+02 Score=35.30 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.5
Q ss_pred CCCCcCccccceecc
Q 002439 461 PKTKLKPFFWDKVLA 475 (921)
Q Consensus 461 Pk~klK~l~W~KI~~ 475 (921)
+......+.|.||+.
T Consensus 867 ~p~~~g~~~~~~iP~ 881 (1049)
T KOG0307|consen 867 PPALQGSYRKPKIPP 881 (1049)
T ss_pred CCcccCCCCCCCCCc
Confidence 333444555666653
No 54
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=56.66 E-value=43 Score=36.87 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=8.9
Q ss_pred ehHHHHHHHHHHhhhhhHH
Q 002439 692 TLLHFVVQEIIRSEGVRAA 710 (921)
Q Consensus 692 tLLh~lv~~i~~~~g~~~~ 710 (921)
++...| +.|+.+||-.++
T Consensus 97 S~~sil-q~If~KHGDIAs 114 (269)
T PF05278_consen 97 SQVSIL-QKIFEKHGDIAS 114 (269)
T ss_pred hHHHHH-HHHHHhCccHhh
Confidence 444433 456666664443
No 55
>PRK15313 autotransport protein MisL; Provisional
Probab=55.72 E-value=28 Score=44.31 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=3.8
Q ss_pred CCccccc
Q 002439 47 PVTGEVD 53 (921)
Q Consensus 47 ~~~~~~~ 53 (921)
|++|+|.
T Consensus 36 ~~~~~~~ 42 (955)
T PRK15313 36 PSSGLVS 42 (955)
T ss_pred cccCccc
Confidence 5555553
No 56
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=55.15 E-value=4.1e+02 Score=31.23 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=8.3
Q ss_pred hhhhhhhhhhHHHHHH
Q 002439 746 LQAVSHLSSELENVKK 761 (921)
Q Consensus 746 l~~v~~l~~eL~~V~k 761 (921)
++||.+=..||..|-+
T Consensus 243 l~Vl~~Da~El~~V~~ 258 (412)
T PF04108_consen 243 LEVLENDAQELPDVVK 258 (412)
T ss_pred HHHHHcchhhHHHHHH
Confidence 4555555555555544
No 57
>PRK15313 autotransport protein MisL; Provisional
Probab=55.11 E-value=29 Score=44.18 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=3.4
Q ss_pred Ccccccc
Q 002439 480 SMVWHQI 486 (921)
Q Consensus 480 ~TIW~~i 486 (921)
..+|..+
T Consensus 677 ~s~WlR~ 683 (955)
T PRK15313 677 TSLWMRN 683 (955)
T ss_pred CceEEEe
Confidence 3455544
No 58
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.90 E-value=4.3 Score=34.74 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHHHh
Q 002439 240 KTNHHNTVIIAVVVTAAVTFVAAALLFLCC 269 (921)
Q Consensus 240 ~~~~~~~~ii~v~vta~~~~v~a~llf~~c 269 (921)
+++...++|.|++++++.+++++.++++.|
T Consensus 7 ~~~vlaavIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 7 RSEVLAAVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp ------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888877777744
No 59
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=52.27 E-value=9.6 Score=47.35 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=13.4
Q ss_pred CCcceehhhhHHHHHHHHHHHHHH---HHhcccccC
Q 002439 243 HHNTVIIAVVVTAAVTFVAAALLF---LCCSRFCRT 275 (921)
Q Consensus 243 ~~~~~ii~v~vta~~~~v~a~llf---~~c~~~~~~ 275 (921)
+++..+++|.. +.++|++++|| |.|+|+|.+
T Consensus 270 YHT~fLl~ILG--~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 270 YHTVFLLAILG--GTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcccCC
Confidence 34444455443 33334444444 224444443
No 60
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=51.11 E-value=25 Score=37.16 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=14.5
Q ss_pred ceehhhhHHHHHHHHHHHHHH-HHhc
Q 002439 246 TVIIAVVVTAAVTFVAAALLF-LCCS 270 (921)
Q Consensus 246 ~~ii~v~vta~~~~v~a~llf-~~c~ 270 (921)
.++|++++.|.+++++++++. |||.
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~ 125 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCH 125 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhh
Confidence 388888887754444444444 4443
No 61
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=50.58 E-value=1.8e+02 Score=31.14 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 002439 820 LEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEG 882 (921)
Q Consensus 820 ~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~e~ 882 (921)
.+...+...++.++-+|||-..+..+ -.|..+|.+.-+|-++..|.+.++.+++.
T Consensus 152 ~~~k~rkerl~eEvre~fGy~vDprd--------prF~eml~~kEkeeKKk~K~aKkk~k~ek 206 (217)
T PF10147_consen 152 QAAKERKERLIEEVREHFGYKVDPRD--------PRFQEMLQEKEKEEKKKKKEAKKKEKEEK 206 (217)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445567778899987665444 35888888888887777766666555554
No 62
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=49.58 E-value=14 Score=50.67 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=26.0
Q ss_pred cceehhhhHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCccc
Q 002439 245 NTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLS 289 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~~~~~~~Dd~plL~ 289 (921)
++.+|+|+|..+++|++++++++|| ++.+ +..|+++++.+||.
T Consensus 3992 kaEli~I~V~l~~ifilvvlf~~cr-Kk~~-rkky~~~~~~~ll~ 4034 (4289)
T KOG1219|consen 3992 KAELIIIIVLLALIFILVVLFWKCR-KKNS-RKKYGAHCPVDLLR 4034 (4289)
T ss_pred ccceeehhHHHHHHHHHHHHHHhhh-hhcc-CCcccccCChhHHh
Confidence 4556677776777777777555544 3333 34566666666654
No 63
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=49.09 E-value=72 Score=38.87 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=17.5
Q ss_pred CCCCcceehhhhHHHHHHHHHHHHHHHH
Q 002439 241 TNHHNTVIIAVVVTAAVTFVAAALLFLC 268 (921)
Q Consensus 241 ~~~~~~~ii~v~vta~~~~v~a~llf~~ 268 (921)
.++.+.++|++.++..+++++++++|++
T Consensus 386 ~~~~t~~~~~~f~~if~iva~ii~~~L~ 413 (807)
T KOG1094|consen 386 DGSPTAILIIIFVAIFLIVALIIALMLW 413 (807)
T ss_pred cCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666555555555554
No 64
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=48.47 E-value=22 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.557 Sum_probs=12.1
Q ss_pred cceehhhhHHHHHHHHHH-HHHHHH
Q 002439 245 NTVIIAVVVTAAVTFVAA-ALLFLC 268 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a-~llf~~ 268 (921)
.-+|+-..++|+.+|+|+ +|+|||
T Consensus 13 ~qivlwgsLaav~~f~lis~LifLC 37 (428)
T PF15347_consen 13 VQIVLWGSLAAVTTFLLISFLIFLC 37 (428)
T ss_pred eeEEeehHHHHHHHHHHHHHHHHHh
Confidence 334444445555555544 455555
No 65
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.91 E-value=3.5e+02 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=19.0
Q ss_pred eeeeccccccccccccC--------CCCeehHHHHHHHH
Q 002439 671 QAFKLDTLLKLSDVKGV--------DGKTTLLHFVVQEI 701 (921)
Q Consensus 671 ~GFkL~sL~KL~d~Ks~--------d~k~tLLh~lv~~i 701 (921)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+++
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~ 144 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEV 144 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 55666666778888862 33455655555554
No 66
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.90 E-value=99 Score=38.03 Aligned_cols=7 Identities=43% Similarity=1.037 Sum_probs=4.0
Q ss_pred ccccccc
Q 002439 481 MVWHQIK 487 (921)
Q Consensus 481 TIW~~i~ 487 (921)
..|.+|.
T Consensus 469 ~~w~~~~ 475 (585)
T PRK14950 469 AIWKQIL 475 (585)
T ss_pred HHHHHHH
Confidence 3576663
No 67
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=47.42 E-value=2.1e+02 Score=29.93 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 002439 823 EKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 881 (921)
Q Consensus 823 ~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~e 881 (921)
..+...++.++-+|||---+.-+ ..|-.||++--+|-+++.|.+.++.++|
T Consensus 166 ~~r~erli~eiqe~fGy~vDprd--------~RF~emLqqkEkeekK~~KeaKrk~k~e 216 (225)
T KOG4848|consen 166 EVRLERLIREIQEYFGYWVDPRD--------PRFEEMLQQKEKEEKKAVKEAKRKEKQE 216 (225)
T ss_pred HHHHHHHHHHHHHHhCccCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788899975433222 3466677776667666665555444444
No 68
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=47.31 E-value=79 Score=33.84 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002439 623 EVSATKESFEILEVACKE 640 (921)
Q Consensus 623 ~~~~l~~~l~~l~~A~~e 640 (921)
++.++...+.....+++.
T Consensus 8 df~~le~~~d~~~~~~~~ 25 (215)
T cd07593 8 EFLELEKEIELRKEGMER 25 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 69
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=45.90 E-value=15 Score=36.36 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 250 AVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 250 ~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
-++++.++++++++++.++|.++|||+
T Consensus 33 tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 334444555556666666676666654
No 70
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=45.52 E-value=28 Score=31.63 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCCCcccc
Q 002439 258 TFVAAALLFLCCSRFCRTGSGGRQNDERPLLSL 290 (921)
Q Consensus 258 ~~v~a~llf~~c~~~~~~~~~~~~~Dd~plL~l 290 (921)
.|++++++.+.||+ +| ++.|..-+||..-+
T Consensus 43 iFil~VilwfvCC~-kR--krsRrPIYrPvI~~ 72 (94)
T PF05393_consen 43 IFILLVILWFVCCK-KR--KRSRRPIYRPVIGL 72 (94)
T ss_pred HHHHHHHHHHHHHH-Hh--hhccCCcccccccc
Confidence 34555555544543 33 23556667776443
No 71
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=44.19 E-value=7.6e+02 Score=32.92 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=10.8
Q ss_pred HhhhhhhhhHHHHhhhcCc
Q 002439 62 FSCGIDLIRLKEVVEDLNL 80 (921)
Q Consensus 62 ~~c~~d~~~~~~~~~~~~~ 80 (921)
+.|.++...++++-.....
T Consensus 1125 v~~~le~ttl~~vt~~t~i 1143 (1605)
T KOG0260|consen 1125 VQCCLEHTTLKDVTRATEI 1143 (1605)
T ss_pred HhhhcccccHHhhhccCcc
Confidence 3466666666666554433
No 72
>PHA03265 envelope glycoprotein D; Provisional
Probab=44.17 E-value=16 Score=41.09 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCC
Q 002439 240 KTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDER 285 (921)
Q Consensus 240 ~~~~~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~~~~~~~Dd~ 285 (921)
+++....++||..|+++ +++.++||+|++|+|. .+.+.+|.-.
T Consensus 345 ~~~~~~g~~ig~~i~gl--v~vg~il~~~~rr~k~-~~k~~~~~~~ 387 (402)
T PHA03265 345 SNSTFVGISVGLGIAGL--VLVGVILYVCLRRKKE-LKKSAQNGLT 387 (402)
T ss_pred CCCcccceEEccchhhh--hhhhHHHHHHhhhhhh-hhhhhhcCCh
Confidence 33444566666665544 4566667777655433 2344444433
No 73
>PTZ00234 variable surface protein Vir12; Provisional
Probab=43.78 E-value=2.3e+02 Score=33.56 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=8.1
Q ss_pred CccccccCCCCCC
Q 002439 138 GSWYESLYPQPDA 150 (921)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (921)
.+..++++|+.+.
T Consensus 233 ~~~~~~~~g~~s~ 245 (433)
T PTZ00234 233 SSFLGWFWGSSSP 245 (433)
T ss_pred cccccccccccCC
Confidence 4477777776544
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=42.95 E-value=4.4e+02 Score=30.18 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=41.3
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccccccc
Q 002439 765 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG--DIMWLLEEEKRIMSLVKSTGDYFHGNA 841 (921)
Q Consensus 765 vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~--~v~~L~e~~k~~~~~~k~~~~yF~g~~ 841 (921)
++..-+..++....++...++..+.+.+..-..-..|+.-|.--+.+|++ -...|.-..+-+-+.++....|=|-+-
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~C 360 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNC 360 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceeccc
Confidence 44444444455555666666665555444333334677777777777766 333343323333355666666766544
No 75
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=42.89 E-value=22 Score=41.83 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=11.4
Q ss_pred ceehhhhHHHHHHHHHHHHHH
Q 002439 246 TVIIAVVVTAAVTFVAAALLF 266 (921)
Q Consensus 246 ~~ii~v~vta~~~~v~a~llf 266 (921)
.+++|.+.+|+.++.+++++|
T Consensus 43 L~lla~l~aa~l~l~Ll~ll~ 63 (526)
T KOG4433|consen 43 LLLLAALAAACLGLSLLFLLF 63 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655554444444
No 76
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.85 E-value=9.3 Score=38.35 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 002439 260 VAAALLF 266 (921)
Q Consensus 260 v~a~llf 266 (921)
+++.++|
T Consensus 68 ~lvf~~c 74 (154)
T PF04478_consen 68 ALVFIFC 74 (154)
T ss_pred HhheeEE
Confidence 3334444
No 77
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.69 E-value=2.4e+02 Score=25.74 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 002439 855 DFFIMLDKACKQVKDAPKKSTK 876 (921)
Q Consensus 855 dFl~~l~ka~kEv~~~~kr~~k 876 (921)
.....|..+.+++.+++++..+
T Consensus 75 KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 75 KLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555443
No 78
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=42.43 E-value=76 Score=37.13 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred hhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHH----HHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 002439 750 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTR----DFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEE 823 (921)
Q Consensus 750 ~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~----~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~ 823 (921)
.-....|+.|.+ |.+.+..++.+|..-+...+ +.+++++..+.++..|..-.+.++...++++.++.+.+
T Consensus 246 Rp~~~qLe~v~k----di~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf 319 (426)
T smart00806 246 RPSKKQLETVQK----ELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETF 319 (426)
T ss_pred CCCHHHHHHHHH----HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655 34445555555555444432 33455666667777888888888888888877765444
No 79
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.36 E-value=6.3e+02 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=17.0
Q ss_pred chhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002439 800 GFHETLKSFVQNAEGDIMW----LLEEEKRIMSLVK 831 (921)
Q Consensus 800 ~F~~~m~~Fl~~A~~~v~~----L~e~~k~~~~~~k 831 (921)
.+...+-.-+..-+.++.. |..++..+..+++
T Consensus 192 ~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 192 PLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554 4445666665554
No 80
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=41.87 E-value=30 Score=30.96 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=25.9
Q ss_pred CcceehhhhHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcccc
Q 002439 244 HNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSL 290 (921)
Q Consensus 244 ~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~~~~~~~Dd~plL~l 290 (921)
+..++.|++++=+++=+++++..|+|.+. | ++..+.|++-+.++
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car~-r--~r~~~~~~kvYiNm 75 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCARP-R--RRPTQEDDKVYINM 75 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccc-c--cCCcccCCEEEEeC
Confidence 34577787776655555555555666553 2 34556777766544
No 81
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.48 E-value=2.1e+02 Score=24.41 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439 804 TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 804 ~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr 873 (921)
.|..+..........|.....++...+..+...+.|... ..|...+..|...+.+.++.+.+..+.
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~----~af~~~~~~~~~~~~~~~~~L~~~~~~ 73 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA----DAFQDKFEEWNQAFRQLNEALEELSQA 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555666666666666656655433 334444445555555555555444433
No 82
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.30 E-value=1.6e+02 Score=34.76 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHH------hhhhcccCCCCchhhhHHHHHHHH
Q 002439 739 EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFL------NTDMKNLGENSGFHETLKSFVQNA 812 (921)
Q Consensus 739 ~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l------~~~~k~~~~~~~F~~~m~~Fl~~A 812 (921)
.+|-.+-++.+..+..++.+++++.++- ...+.++...+.++.+.+ ++.+ ...-+-...+++.-.+.-
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~----e~k~~q~q~k~~k~~kel~~~~E~n~~l--~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIV----ERKLQQLQTKLKKCQKELKEEREENKKL--IKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 3454555566667777777776654432 233344444444433332 2222 111233455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 002439 813 EGDIMWLLEEEKRIMSLVKSTGDYF 837 (921)
Q Consensus 813 ~~~v~~L~e~~k~~~~~~k~~~~yF 837 (921)
++.+....++...+.+.+++++-|+
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHheeh
Confidence 5555555555566666677776444
No 83
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.80 E-value=85 Score=28.48 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhh
Q 002439 801 FHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 875 (921)
Q Consensus 801 F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 875 (921)
|...+..=++..+..+..|......+...+.++...|.+........+.|.... ....+..+.+++....++..
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666655555555555555555533332223333454555 66677777777766666654
No 84
>PF15102 TMEM154: TMEM154 protein family
Probab=39.33 E-value=25 Score=35.17 Aligned_cols=7 Identities=14% Similarity=0.676 Sum_probs=2.6
Q ss_pred ehhhhHH
Q 002439 248 IIAVVVT 254 (921)
Q Consensus 248 ii~v~vt 254 (921)
|+-|+|.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 3333333
No 85
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=39.10 E-value=1.5e+02 Score=29.85 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCHHHHHHHhhhcCCC---------CCCChHHHHHHHHhCCcchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 002439 562 AELIQTLLKMAPTAEEELKLRLFNGEL---------SQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFE 632 (921)
Q Consensus 562 ~e~l~~Ll~~~Pt~eE~~~l~~~~gd~---------~~L~~aE~Fl~~l~~Ip~~~~RL~~llf~~~f~e~~~~l~~~l~ 632 (921)
.....+|..+.|+-+|++.+...-+.. ..|..++..+....++.+|. ++-+..|...+.++...|.
T Consensus 37 ~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n-----~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 37 KRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWN-----LYKKPRYARKIEELEESLR 111 (147)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHH-----HHhhHhHHHHHHHHHHHHH
Confidence 445567888999999988876432211 12233333344444443221 2234567777777777777
Q ss_pred HHHHHHHHHHhcHHHHHHHHH
Q 002439 633 ILEVACKELRNSRLFLKLLEA 653 (921)
Q Consensus 633 ~l~~A~~el~~S~~f~~lL~~ 653 (921)
.+...--++.....+++++..
T Consensus 112 ~f~~v~~q~~~~~D~~~l~~~ 132 (147)
T PF05659_consen 112 RFIQVDLQLHQLRDIKELLAK 132 (147)
T ss_pred HHhcchhHHHHHHHHHHHHHH
Confidence 666554444444444444443
No 86
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.90 E-value=3.2e+02 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 801 FHETLKSFVQNAEGDIMWLLEEEKRIM 827 (921)
Q Consensus 801 F~~~m~~Fl~~A~~~v~~L~e~~k~~~ 827 (921)
..+.|..-+..+......+....+++.
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~ 70 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELE 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444444443
No 87
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.54 E-value=6.9e+02 Score=32.83 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=13.0
Q ss_pred hcchhhhcchhhhhhhhccCC
Q 002439 27 VVSSEYRRTREEDFLCKVVDP 47 (921)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ 47 (921)
++..|-..++.+.|+..+=++
T Consensus 525 ~gg~el~~~t~~~Y~~k~~~k 545 (1049)
T KOG0307|consen 525 AGGTELLESTRDKYLAKSNSK 545 (1049)
T ss_pred cCCHHHHHHHHHHHHHHhCCh
Confidence 355666667777777665544
No 88
>PRK11637 AmiB activator; Provisional
Probab=38.50 E-value=2.3e+02 Score=33.29 Aligned_cols=19 Identities=11% Similarity=-0.115 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002439 805 LKSFVQNAEGDIMWLLEEE 823 (921)
Q Consensus 805 m~~Fl~~A~~~v~~L~e~~ 823 (921)
++.=+...+.++..+.+..
T Consensus 108 l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 89
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=38.33 E-value=5e+02 Score=27.36 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhh
Q 002439 803 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874 (921)
Q Consensus 803 ~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 874 (921)
..+..=+..++.++..+..++..+.+.++.=++.|.. ....+|=.++.+|+...-...+++-+.|+..
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~----~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK----EKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456666777777777777777777776655566633 2234455677778877777777777777653
No 90
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=38.26 E-value=3.9e+02 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=18.0
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHHh
Q 002439 242 NHHNTVIIAVVVTAAVTFVAAALLFLCC 269 (921)
Q Consensus 242 ~~~~~~ii~v~vta~~~~v~a~llf~~c 269 (921)
+....+|.+||.+.++++|-|+.=|+-.
T Consensus 111 ~~~~g~IaGIvsav~valvGAvsSyiaY 138 (169)
T PF12301_consen 111 EAEAGTIAGIVSAVVVALVGAVSSYIAY 138 (169)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777776666666666543
No 91
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.85 E-value=2.1e+02 Score=30.43 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=18.2
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHH
Q 002439 242 NHHNTVIIAVVVTAAVTFVAAALLFL 267 (921)
Q Consensus 242 ~~~~~~ii~v~vta~~~~v~a~llf~ 267 (921)
++++.+++...|..+|+|++.++||+
T Consensus 124 n~~K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 124 NNNKMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777778888888883
No 92
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=37.50 E-value=26 Score=44.96 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=9.7
Q ss_pred chHHHHhhhhhhhhhhhhhH
Q 002439 737 TDEHYRNLGLQAVSHLSSEL 756 (921)
Q Consensus 737 ~~~~~~~lgl~~v~~l~~eL 756 (921)
++-+|-+.|||++.+-.+-|
T Consensus 515 T~IDWVEAGLQlcrQGhnML 534 (2365)
T COG5178 515 TEIDWVEAGLQLCRQGHNML 534 (2365)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 34445555666554433333
No 93
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=37.01 E-value=26 Score=44.97 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeee
Q 002439 636 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAF 673 (921)
Q Consensus 636 ~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GF 673 (921)
+-++++|.++.++.|+.+... .|-.+|-..||
T Consensus 627 klM~QIraCKd~KhliyY~fn------~g~gkgpgcgf 658 (2365)
T COG5178 627 KLMKQIRACKDWKHLIYYAFN------EGVGKGPGCGF 658 (2365)
T ss_pred HHHHHHHHhhhHHHHHHHHhh------cCCCCCCCCCc
Confidence 345666667777777666543 33334555565
No 94
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=36.90 E-value=67 Score=33.94 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHhhhcCcccccCCCCCCCCCCccccccchhhHHHHHhhhChHHHHHHHH-Hhh
Q 002439 71 LKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTLLH-CIR 125 (921)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~k~~~l~-cl~ 125 (921)
...|++.|||+|.++-... +...+.+ -.|.++..|--++-|.|.| |||
T Consensus 62 G~~Vl~~fDY~F~ENGl~~----yk~gk~~---~~Qsi~~~LGee~~q~liNF~Lr 110 (252)
T KOG3189|consen 62 GDNVLEEFDYVFSENGLVA----YKGGKLL---SKQSIINHLGEEKLQELINFCLR 110 (252)
T ss_pred chhHHhhhcccccCCCeeE----eeCCcch---hHHHHHHHHhHHHHHHHHHHHHH
Confidence 3678899999999986542 2222222 4578888899999999999 998
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.98 E-value=29 Score=33.83 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=19.0
Q ss_pred CCCcceehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 242 NHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 242 ~~~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
.....+|+||++|. +++|+++++|+..++||.+.
T Consensus 64 ~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 64 PAIIGIIFGVMAGV-IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS-----
T ss_pred cceeehhHHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 45556666666555 55666677788888888876
No 96
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=35.94 E-value=4.3e+02 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=14.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 800 GFHETLKSFVQNAEGDIMWLLEEEKRIM 827 (921)
Q Consensus 800 ~F~~~m~~Fl~~A~~~v~~L~e~~k~~~ 827 (921)
.....|...+......+..+....+++.
T Consensus 41 ~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 41 ELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566555555555555544444443
No 97
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.93 E-value=7.7 Score=36.84 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred cCCCCCCCCCC
Q 002439 274 RTGSGGRQNDE 284 (921)
Q Consensus 274 ~~~~~~~~~Dd 284 (921)
||+++|+.--+
T Consensus 48 kRRSGYk~L~~ 58 (118)
T PF14991_consen 48 KRRSGYKTLRD 58 (118)
T ss_dssp -----------
T ss_pred eecchhhhhhh
Confidence 33455554333
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.73 E-value=9e+02 Score=31.60 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=23.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 608 FKRLEALLFMCTLQEEVSATKESFEILEVACKE 640 (921)
Q Consensus 608 ~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~e 640 (921)
..||+++.-..+|..++.+|...|..+..-++.
T Consensus 664 rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~ 696 (1200)
T KOG0964|consen 664 RSRLELLKNVNESRSELKELQESLDEVRNEIED 696 (1200)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777877777777776665544443
No 99
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=35.24 E-value=19 Score=37.44 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=16.8
Q ss_pred cceehhhhHHHHHHHHHHHHHHHHhccc
Q 002439 245 NTVIIAVVVTAAVTFVAAALLFLCCSRF 272 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~llf~~c~~~ 272 (921)
....++|++..++++++++++++|++.|
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R 183 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNR 183 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeec
Confidence 4556666666666666666556655543
No 100
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=34.83 E-value=29 Score=40.79 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 002439 593 PAERFLK 599 (921)
Q Consensus 593 ~aE~Fl~ 599 (921)
.|.+|+.
T Consensus 456 AAkeYl~ 462 (465)
T PF01690_consen 456 AAKEYLE 462 (465)
T ss_pred HHHHHHH
Confidence 3444443
No 101
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.57 E-value=1e+03 Score=29.86 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCC
Q 002439 619 TLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDG 664 (921)
Q Consensus 619 ~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~g 664 (921)
++.+.+..|...++-+...-.+= -..|+.++.-+-.+-+.+++.
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR--~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDER--RAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 44455555555555544433321 234666666666666666655
No 102
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.43 E-value=3.7e+02 Score=35.14 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=9.8
Q ss_pred HHhCCcchhhHhHHHHH
Q 002439 600 ALVDIPFSFKRLEALLF 616 (921)
Q Consensus 600 ~l~~Ip~~~~RL~~llf 616 (921)
.+++|.-+++||+.+--
T Consensus 1158 DFSDIEkLE~qLq~~~~ 1174 (1439)
T PF12252_consen 1158 DFSDIEKLEKQLQVIHT 1174 (1439)
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 34555566666666543
No 103
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.36 E-value=3.7e+02 Score=34.67 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=3.1
Q ss_pred ccceec
Q 002439 469 FWDKVL 474 (921)
Q Consensus 469 ~W~KI~ 474 (921)
.|..|.
T Consensus 515 ~W~~Il 520 (824)
T PRK07764 515 RWPEIL 520 (824)
T ss_pred HHHHHH
Confidence 465554
No 104
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.73 E-value=8e+02 Score=30.15 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 002439 804 TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSL 878 (921)
Q Consensus 804 ~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~ 878 (921)
-+-.|.++...++..|......+.++-+++. .-...|.++|+++-..|++.++..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~--------------------~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVK--------------------KLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666554444443333322 223356667777766666665433
No 105
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=33.64 E-value=7.3e+02 Score=27.88 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHH
Q 002439 804 TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQV 867 (921)
Q Consensus 804 ~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv 867 (921)
.+..-++.+|+++....++.-.+|..| + +..++.+.+..|..|=..|.+.|.+.
T Consensus 226 ~~r~~lE~aEDeFv~aTeeAv~~Mk~v---l-------~~~e~l~~Lk~lv~AQl~Yhk~aae~ 279 (289)
T PF10455_consen 226 QLRVELEQAEDEFVSATEEAVEVMKEV---L-------DNSEPLRLLKELVKAQLEYHKKAAEA 279 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------cCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677776655544444333332 2 12344455555555555665555443
No 106
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=33.54 E-value=4.3e+02 Score=28.82 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=3.8
Q ss_pred HhcccccCC
Q 002439 656 KTGNRMNDG 664 (921)
Q Consensus 656 ~iGN~lN~g 664 (921)
..|+-++.+
T Consensus 68 ~~g~~l~~~ 76 (244)
T cd07595 68 ESSKELPDD 76 (244)
T ss_pred HHHHhcCCC
Confidence 444444333
No 107
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=33.37 E-value=35 Score=39.99 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 002439 801 FHETLKSFVQNAEGDIMWL 819 (921)
Q Consensus 801 F~~~m~~Fl~~A~~~v~~L 819 (921)
....++.-++..+..+..|
T Consensus 316 ~l~~i~~~Ln~~e~~l~~l 334 (406)
T PF04906_consen 316 PLLAIQEDLNSTERSLHQL 334 (406)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443
No 108
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.36 E-value=19 Score=35.10 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=6.2
Q ss_pred HHHHHHHHHhccc
Q 002439 260 VAAALLFLCCSRF 272 (921)
Q Consensus 260 v~a~llf~~c~~~ 272 (921)
|++++||+++++.
T Consensus 9 i~~i~l~~~~~~~ 21 (130)
T PF12273_consen 9 IVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555543
No 109
>PRK11637 AmiB activator; Provisional
Probab=32.16 E-value=3.2e+02 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002439 803 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFH 838 (921)
Q Consensus 803 ~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~ 838 (921)
..+..=+...+.++..+.++..+..+.++..+.+.+
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667777777776666666666655443333
No 110
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=31.39 E-value=57 Score=29.79 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=24.6
Q ss_pred eehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 247 VIIAVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 247 ~ii~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
.-+.|+++-.+.+|+.=+.|+.-++|.|+-
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 347778888888899999999999987764
No 111
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.89 E-value=6.2e+02 Score=26.18 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhh
Q 002439 848 RLFTIVRDFFIMLDKACKQVKDAP 871 (921)
Q Consensus 848 ~fF~iv~dFl~~l~ka~kEv~~~~ 871 (921)
.+|..+.+.+..++....++..++
T Consensus 170 ~~~~~~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 170 SIFSEIEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888887766
No 112
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=30.47 E-value=4e+02 Score=26.32 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=39.6
Q ss_pred hhhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 749 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMS 828 (921)
Q Consensus 749 v~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~ 828 (921)
+.++.+-|..+-++...|-..|...++++...+.++-..+.+- .+.+..|.+..+ +|..+.....++..
T Consensus 33 c~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~er----------qk~~~k~ae~L~-kv~els~~L~~~~~ 101 (131)
T PF10158_consen 33 CSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVER----------QKRFAKFAEQLE-KVNELSQQLSRCQS 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455555666666656666677666766666666554443321 223444444222 35556555555555
Q ss_pred HHHHh
Q 002439 829 LVKST 833 (921)
Q Consensus 829 ~~k~~ 833 (921)
++.++
T Consensus 102 lL~~~ 106 (131)
T PF10158_consen 102 LLNQT 106 (131)
T ss_pred HHHHH
Confidence 55544
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.40 E-value=3e+02 Score=33.78 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=37.3
Q ss_pred hhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 764 AIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMS 828 (921)
Q Consensus 764 ~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~ 828 (921)
..+++.+...+.++...+...-+.+++.+.....-.+=...+..|+.+++.....|..+..++..
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665554322111222456777777777776666555544443
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.32 E-value=5.3e+02 Score=27.25 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhh---chhhHhHHHHHHHHHHHHHHHH
Q 002439 745 GLQAVSHLSSELENVKKAAAI---DADSLTGTVSKLGHALLKTRDF 787 (921)
Q Consensus 745 gl~~v~~l~~eL~~V~kAa~v---d~d~L~~~v~kL~~~l~k~~~~ 787 (921)
+|..+.+|.+|+...++-..- ....+..+-..|...|.+++..
T Consensus 25 NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e 70 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE 70 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566678888888877765322 2233444445555666665543
No 115
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.95 E-value=2.3e+02 Score=34.11 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=58.6
Q ss_pred hhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCC-ch-------------hhhHHHHHHHHHHH
Q 002439 750 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENS-GF-------------HETLKSFVQNAEGD 815 (921)
Q Consensus 750 ~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~-~F-------------~~~m~~Fl~~A~~~ 815 (921)
..|..|++.|++.-.+.-+.+. .+.+++..|..+.+.+....+.++... .| ...++.=..++.+.
T Consensus 326 ~~L~~Eie~V~~sY~l~e~e~~-~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~ 404 (570)
T COG4477 326 EHLKEEIERVKESYRLAETELG-SVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEH 404 (570)
T ss_pred HHHHHHHHHHHHHhccChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456677777776655544432 344555555555444432222221110 11 11112222233334
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhh
Q 002439 816 IMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 875 (921)
Q Consensus 816 v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 875 (921)
+..|.+++.++......+..-.++.....+...+=|+-.+|+.+|..+..++++..++..
T Consensus 405 L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLs 464 (570)
T COG4477 405 LTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELS 464 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHh
Confidence 444544443333332222222222222234444557778888888888888777766654
No 116
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=29.93 E-value=98 Score=34.78 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=16.6
Q ss_pred HhhhhhhhhHHHHhhhcCcccccCCCC
Q 002439 62 FSCGIDLIRLKEVVEDLNLCLPEETPG 88 (921)
Q Consensus 62 ~~c~~d~~~~~~~~~~~~~~~~~~~~~ 88 (921)
.+|+-=|..++|.. -.+|.+.-...
T Consensus 61 ~~CGPCL~pf~Ed~--~G~CV~rk~~~ 85 (341)
T PF06809_consen 61 SACGPCLQPFQEDQ--QGLCVPRKRLR 85 (341)
T ss_pred CCcCcccCccccCC--CcceecccccC
Confidence 34887777777776 45588775443
No 117
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=29.80 E-value=1.8e+02 Score=28.32 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHH
Q 002439 776 KLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGD 815 (921)
Q Consensus 776 kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~ 815 (921)
+|..++.++++.++..+...+....|.+.|+.+...--.+
T Consensus 10 ~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD 49 (121)
T PF03310_consen 10 ELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3334444444333333322222234555666555444333
No 118
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=29.76 E-value=2.8e+02 Score=34.52 Aligned_cols=126 Identities=8% Similarity=0.090 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHh-hhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 751 HLSSELENVKKA-AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSL 829 (921)
Q Consensus 751 ~l~~eL~~V~kA-a~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~ 829 (921)
.-..+++.+.+- ..-+++.+...+.+++..|..+...+. .+.....++.+++.-+...-.-.+-...| .+...+.+.
T Consensus 39 ~~~~~i~~i~~~~~~pt~~n~v~~Le~~~~~L~rv~~~~~-~l~~v~~~~elr~a~e~~~pklse~~~~l-~~~~~Lf~~ 116 (683)
T COG0339 39 QARAEIDAIAANPDAPTWENTVEPLERAGDRLGRVWSVVS-HLNSVHNSPELREAYEEILPKLSEFSNDL-GQNPGLFAR 116 (683)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHhhHHHHHHHHHH-HHHhcCCCHHHHHHHHHhhHHHHHHHHHh-hcCHHHHHH
Confidence 344556666554 466778888888888999999988775 34455566666555444443333333332 233455555
Q ss_pred HHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 002439 830 VKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 881 (921)
Q Consensus 830 ~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~e 881 (921)
++.+.+ .-+..+.++ +=+.++..+++.|.+.--++...+|..-.+..+|
T Consensus 117 ~~al~~--~~e~~~ld~-e~~r~~e~~~rdF~~sGa~L~~~~k~r~~~I~~e 165 (683)
T COG0339 117 YKALWQ--SPESAGLDP-EQKRVVENALRDFVLSGAKLPPEKKARLAEINTE 165 (683)
T ss_pred HHHHhc--CcccccCCH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 655532 112222222 2346777777777776666555544444333333
No 119
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.45 E-value=1.1e+03 Score=28.81 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 613 ALLFMCTLQEEVSATKESFEILEVACKEL 641 (921)
Q Consensus 613 ~llf~~~f~e~~~~l~~~l~~l~~A~~el 641 (921)
+|-....+++.+.++...+..+......|
T Consensus 362 vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 362 VWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555566655555554444433
No 120
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.99 E-value=5.3e+02 Score=30.35 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc
Q 002439 861 DKACKQVKDAPKKSTKSLKKEG 882 (921)
Q Consensus 861 ~ka~kEv~~~~kr~~k~~k~e~ 882 (921)
..|.++++.+++-.+|-+||..
T Consensus 357 qnaekql~~Ake~~eklkKKrs 378 (575)
T KOG4403|consen 357 QNAEKQLKEAKEMAEKLKKKRS 378 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc
Confidence 5567777777776666555554
No 121
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=27.57 E-value=48 Score=26.00 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=19.0
Q ss_pred ccCCCCCCCCcCCCCCCCCCCCCC
Q 002439 308 DIGKFDGTASFGAVGGTAKSFNEN 331 (921)
Q Consensus 308 g~~s~~~~~~~~~~~~~~~~~~~~ 331 (921)
.++.|.+++|..|+||++. ++..
T Consensus 2 ~IS~Ptnf~H~~HvG~d~~-g~~~ 24 (42)
T cd00132 2 EISTPTDFKHISHVGWDGV-GFDG 24 (42)
T ss_pred cccCCCCcCcccccCCCCC-Cccc
Confidence 4778899999999999887 6554
No 122
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.46 E-value=4.6e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhh
Q 002439 757 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNT 790 (921)
Q Consensus 757 ~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~ 790 (921)
..+.+-..++...+...+..|++.|.+++..++.
T Consensus 13 ~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 13 HQISKDPPLSSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3343435677888888899999999999988763
No 123
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.44 E-value=3.3e+02 Score=28.44 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHh
Q 002439 754 SELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 789 (921)
Q Consensus 754 ~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~ 789 (921)
..|+....+ -+.|..++.+|..++..+.+.+.
T Consensus 88 eQLEq~~~~----N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 88 EQLEQARKA----NEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555443 46677778887777776665443
No 124
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=27.43 E-value=5.8e+02 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=19.3
Q ss_pred HHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhh
Q 002439 757 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD 791 (921)
Q Consensus 757 ~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~ 791 (921)
..+..+.+--...+...+..+...|.++.+.|.+.
T Consensus 48 ~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~ 82 (155)
T PF07464_consen 48 SSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKA 82 (155)
T ss_dssp HHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444433223455566677777777777766543
No 125
>PF15050 SCIMP: SCIMP protein
Probab=27.42 E-value=46 Score=32.06 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.5
Q ss_pred eehhhhHHHH
Q 002439 247 VIIAVVVTAA 256 (921)
Q Consensus 247 ~ii~v~vta~ 256 (921)
+|+||++-.+
T Consensus 10 iiLAVaII~v 19 (133)
T PF15050_consen 10 IILAVAIILV 19 (133)
T ss_pred HHHHHHHHHH
Confidence 4455554333
No 126
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=27.20 E-value=42 Score=39.41 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=3.2
Q ss_pred HHHhhhc
Q 002439 497 MIETLFG 503 (921)
Q Consensus 497 ~lE~lF~ 503 (921)
.+++.|+
T Consensus 149 ~L~~il~ 155 (418)
T cd07912 149 NLEDIFD 155 (418)
T ss_pred HHHHHhC
Confidence 3444443
No 127
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=27.18 E-value=2.1e+02 Score=30.66 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=61.5
Q ss_pred hhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccC-----C---CCchhhhHHHHHHHHHHHHHHHHHH
Q 002439 751 HLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG-----E---NSGFHETLKSFVQNAEGDIMWLLEE 822 (921)
Q Consensus 751 ~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~-----~---~~~F~~~m~~Fl~~A~~~v~~L~e~ 822 (921)
.|..++..-++-..-+...+..........+.++++.++.....++ . ..+=.+++..-++.++.++.....+
T Consensus 93 ~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~ 172 (236)
T cd07651 93 AFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRD 172 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444444444555555555555565544432211000 0 0012467777777887777777777
Q ss_pred HHHHHHHHHHhcccccccccc-------ccc--cccch-hHHHHHHHHHHHHHHHHhh
Q 002439 823 EKRIMSLVKSTGDYFHGNAGK-------DEG--LRLFT-IVRDFFIMLDKACKQVKDA 870 (921)
Q Consensus 823 ~k~~~~~~k~~~~yF~g~~~k-------~~~--~~fF~-iv~dFl~~l~ka~kEv~~~ 870 (921)
++.....+..+-..|..+... .+- ..||. .++.|...+...|-...++
T Consensus 173 Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d~~ 230 (236)
T cd07651 173 YQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDDES 230 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 766665555554444333211 011 23555 4777777777777654443
No 128
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.55 E-value=1.3e+03 Score=29.27 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=13.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhh
Q 002439 849 LFTIVRDFFIMLDKACKQVKDAP 871 (921)
Q Consensus 849 fF~iv~dFl~~l~ka~kEv~~~~ 871 (921)
.=.||+.-...+.+-|.+|++.-
T Consensus 270 W~~vFr~l~~q~~~m~esver~~ 292 (683)
T PF08580_consen 270 WNIVFRNLGRQAQKMCESVERSL 292 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666553
No 129
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.41 E-value=4e+02 Score=32.71 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=37.3
Q ss_pred hhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 764 AIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMS 828 (921)
Q Consensus 764 ~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~ 828 (921)
..+++.+...+..+...+...-+.+++.+..-..-.+-...+..|+.+++.....|..+..++..
T Consensus 270 ~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 270 NLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555332211223556777777777766666555544443
No 130
>PF15102 TMEM154: TMEM154 protein family
Probab=26.20 E-value=63 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=13.7
Q ss_pred CcceehhhhHHHHHHHHHHHHHHHHhcc
Q 002439 244 HNTVIIAVVVTAAVTFVAAALLFLCCSR 271 (921)
Q Consensus 244 ~~~~ii~v~vta~~~~v~a~llf~~c~~ 271 (921)
.--++|..++.+++++++ ++|.+.|+|
T Consensus 58 iLmIlIP~VLLvlLLl~v-V~lv~~~kR 84 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSV-VCLVIYYKR 84 (146)
T ss_pred EEEEeHHHHHHHHHHHHH-HHheeEEee
Confidence 456777765555544444 444443433
No 131
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.74 E-value=7.4e+02 Score=25.39 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred cchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCC--chhhhHHHHHHHHH
Q 002439 736 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENS--GFHETLKSFVQNAE 813 (921)
Q Consensus 736 ~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~--~F~~~m~~Fl~~A~ 813 (921)
+.+..|.+.. +-|..|...|..+.++ .+.+......|...+...-..+. .+...+... .....+..|-+...
T Consensus 1 e~d~~f~~~~-~~v~~le~~l~~l~~~----~~~~~k~~~~l~~~~~elg~~~~-~Ls~~e~~~~~~l~~~~~~~~~~~~ 74 (218)
T cd07596 1 EEDQEFEEAK-DYILKLEEQLKKLSKQ----AQRLVKRRRELGSALGEFGKALI-KLAKCEEEVGGELGEALSKLGKAAE 74 (218)
T ss_pred CCcHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccchhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 002439 814 GDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK 880 (921)
Q Consensus 814 ~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~ 880 (921)
.-...+.++.......|-+.+.|| ..++..+++-+..-+++..++..+++...+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~e~L~~y---------~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~ 132 (218)
T cd07596 75 ELSSLSEAQANQELVKLLEPLKEY---------LRYCQAVKETLDDRADALLTLQSLKKDLASKKAQ 132 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.64 E-value=1.9e+02 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 002439 855 DFFIMLDKACKQVKDA 870 (921)
Q Consensus 855 dFl~~l~ka~kEv~~~ 870 (921)
++-...+.++.||+..
T Consensus 348 ~~~~~~~~VL~EV~aL 363 (424)
T PF03915_consen 348 DPHEARDQVLGEVRAL 363 (424)
T ss_dssp ----------------
T ss_pred ChhhHHHHHHHHHHhc
Confidence 5556677777777643
No 133
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=25.49 E-value=8.1e+02 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 002439 854 RDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 854 ~dFl~~l~ka~kEv~~~~kr 873 (921)
..--..|+++|+|...++.+
T Consensus 129 ~kskk~Y~~~~ke~~~a~~k 148 (251)
T cd07653 129 EKSKKAYEKAFKEAEKAKQK 148 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443
No 134
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=24.77 E-value=8.1e+02 Score=26.34 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=5.2
Q ss_pred ehHHHHHHHHH
Q 002439 692 TLLHFVVQEII 702 (921)
Q Consensus 692 tLLh~lv~~i~ 702 (921)
.+|+.+...++
T Consensus 110 ~ll~~il~~~~ 120 (292)
T PF01544_consen 110 DLLYAILDEIV 120 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 135
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=24.63 E-value=3.9e+02 Score=24.76 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439 801 FHETLKSFVQNAEGDI-MWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 801 F~~~m~~Fl~~A~~~v-~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr 873 (921)
|......-...|-+++ .+.....+++.+-+.+-..| ..+|.++..|+..|--+.+-.++.+++
T Consensus 35 Fa~~~~~~~~~a~~kv~~W~~~k~k~~~~FV~RNk~W----------~T~~S~~tS~isIL~LV~~~~KKe~~~ 98 (100)
T PF06363_consen 35 FASKVPTKIKTACDKVKSWVKNKMKSMLSFVERNKAW----------FTVVSAVTSFISILLLVTKIFKKEKSK 98 (100)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcchH----------hhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4344433334444443 34444455544444333333 368899999999998888877765554
No 136
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.46 E-value=1.3e+03 Score=27.83 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcHHHHHHHHhhCCCHHHHHHHhhhc-CCCCCCChHHHHH-HHHhCCcchhhHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002439 560 LPAELIQTLLKMAPTAEEELKLRLFN-GELSQLGPAERFL-KALVDIPFSFKRLEALLFMC-TLQEEVSATKESFEILEV 636 (921)
Q Consensus 560 L~~e~l~~Ll~~~Pt~eE~~~l~~~~-gd~~~L~~aE~Fl-~~l~~Ip~~~~RL~~llf~~-~f~e~~~~l~~~l~~l~~ 636 (921)
+....++.++...|.--+...++... ... +.++++ .-|...+.+..|++|-.-+. .+..+++.|.+.+..|.
T Consensus 294 ~~~~q~e~~L~~kP~gVd~~~W~QA~~dnp----~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq- 368 (508)
T KOG3091|consen 294 LSVAQTEAYLETKPAGVDQRIWRQAMKDNP----PSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ- 368 (508)
T ss_pred cCHHHHHHHhcCCCCCcCHHHHHHHhhcCC----CcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCCCCeehHHHHHHHHHHhhhhhHHhhhhcc
Q 002439 637 ACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARES 716 (921)
Q Consensus 637 A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~g~~~~~~~~e~ 716 (921)
+. .+|+..||...|... .+|=|-|++.|++.+..|=...+
T Consensus 369 --k~---------------------------------~ad~~~KI~~~k~r~--~~Ls~RiLRv~ikqeilr~~G~~--- 408 (508)
T KOG3091|consen 369 --KH---------------------------------HADAVAKIEEAKNRH--VELSHRILRVMIKQEILRKRGYA--- 408 (508)
T ss_pred --hh---------------------------------hhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCc---
Q ss_pred cccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccC
Q 002439 717 RSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG 796 (921)
Q Consensus 717 ~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~ 796 (921)
+..+|-. |...|..+-+-.+-- .+|...|.+|...+......++ .....-
T Consensus 409 -----L~~~EE~-----------------------Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~q~~~~~-~~~~~~ 458 (508)
T KOG3091|consen 409 -----LTPDEEE-----------------------LRAKLDTLLAQLNAP-NQLKARLDELYEILRMQNSQLK-LQESYW 458 (508)
T ss_pred -----CCccHHH-----------------------HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHhhcchhc-ccccee
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002439 797 ENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTG 834 (921)
Q Consensus 797 ~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~ 834 (921)
-|++-..-|++++..-++.+..|.+..++.++.++..+
T Consensus 459 iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l 496 (508)
T KOG3091|consen 459 IDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIKHQL 496 (508)
T ss_pred echhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 137
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.43 E-value=1.7e+02 Score=35.31 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=46.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccccccccccchhHHHHHHHHHHHHHHHHhh
Q 002439 799 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHG-----NAGKDEGLRLFTIVRDFFIMLDKACKQVKDA 870 (921)
Q Consensus 799 ~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g-----~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~ 870 (921)
++|..-++.|.+....+.....+.++++.....++.+||.. -+...+...|=.+-..++..+++..++....
T Consensus 218 ~gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~ 294 (491)
T KOG0251|consen 218 DGIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGG 294 (491)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccc
Confidence 45666677777777777777777888877777777666632 1111222333356677888888877777543
No 138
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=23.76 E-value=3.1e+02 Score=28.11 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=39.5
Q ss_pred chHHHhhHHHHHhhc-CCC---HHHHHHhhhcCCCCcHHHHHHHHhhCCCHH-HHHHHhhhcCCCCCCChHHHHHHHH-h
Q 002439 529 DQKKAQNLSIMLRAL-NVT---LEEVCDALLEGNELPAELIQTLLKMAPTAE-EELKLRLFNGELSQLGPAERFLKAL-V 602 (921)
Q Consensus 529 D~KraqNi~I~L~~l-k~s---~eei~~aI~~~~~L~~e~l~~Ll~~~Pt~e-E~~~l~~~~gd~~~L~~aE~Fl~~l-~ 602 (921)
|..-||.+.-.|-+- +-+ .-++...|++..+|...+-+.++.|.-+.+ +.-.+..|+.+.-+|+.--.-+..+ +
T Consensus 31 d~~Aaq~LrtA~~k~Eq~nPgf~yD~~~~il~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk~iLS 110 (207)
T KOG4025|consen 31 DPRAAQALRTALTKCEQANPGFLYDFTKVILDDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALKRILS 110 (207)
T ss_pred ChhHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 455566665444332 111 245666677766788777778877773222 1223444555555555444444333 3
Q ss_pred CCc
Q 002439 603 DIP 605 (921)
Q Consensus 603 ~Ip 605 (921)
.||
T Consensus 111 riP 113 (207)
T KOG4025|consen 111 RIP 113 (207)
T ss_pred hCc
Confidence 344
No 139
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.74 E-value=5.7e+02 Score=28.92 Aligned_cols=85 Identities=21% Similarity=0.227 Sum_probs=52.8
Q ss_pred cchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHH
Q 002439 736 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGD 815 (921)
Q Consensus 736 ~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~ 815 (921)
+.++.|+..-+ ....|.|=+.+-..-.|-|...+..|...+...+..++.-. +-++.++.++.....+
T Consensus 88 evEekyrkAMv-----~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~-------~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 88 EVEEKYRKAMV-----SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKI-------RELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHH-----HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 66778877432 22345444444445556677777777776666655554222 1256788888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002439 816 IMWLLEEEKRIMSLVKS 832 (921)
Q Consensus 816 v~~L~e~~k~~~~~~k~ 832 (921)
+..|.++.+.-..++.+
T Consensus 156 ~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 156 LDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777666666654
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=23.66 E-value=8.4e+02 Score=31.83 Aligned_cols=66 Identities=24% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcccccCCCCCCCeeeeeccccccccccccCCCCeehHHHHHHHHHH
Q 002439 625 SATKESFEILEVACKELRNSRLFLKLLEAVL-KTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIR 703 (921)
Q Consensus 625 ~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL-~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~ 703 (921)
.+....+..++.+.+.-.++-.|.-+++++. .-|+ +|.+. |.++.+....+.+.++..|+++.|..
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~------------lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSN------------LLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhh------------hhhhhhhcccccchhHHHHHHHHHHh
Confidence 3444455566666666666777777777753 3333 22221 33677777777778999999887654
No 141
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=23.50 E-value=1e+02 Score=36.26 Aligned_cols=57 Identities=25% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeecccccccccc----ccCCCCeehHHHHHH
Q 002439 641 LRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV----KGVDGKTTLLHFVVQ 699 (921)
Q Consensus 641 l~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~----Ks~d~k~tLLh~lv~ 699 (921)
+-.|....-+.-.+|++|||.-.... ..+=..=+.++||.++ |+.|++.++-|-...
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~--ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDI--CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 33455555667778999999744321 1111222556676544 667788887777664
No 142
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=3.1e+02 Score=31.27 Aligned_cols=9 Identities=11% Similarity=0.560 Sum_probs=4.6
Q ss_pred hHHHHHHHH
Q 002439 593 PAERFLKAL 601 (921)
Q Consensus 593 ~aE~Fl~~l 601 (921)
+-|+||..+
T Consensus 332 ~l~~yLr~V 340 (365)
T KOG2391|consen 332 DLDQYLRHV 340 (365)
T ss_pred eHHHHHHHH
Confidence 345555554
No 143
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=22.96 E-value=28 Score=38.86 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHhc
Q 002439 261 AAALLFLCCS 270 (921)
Q Consensus 261 ~a~llf~~c~ 270 (921)
++|.++.|||
T Consensus 160 LIA~iIa~ic 169 (290)
T PF05454_consen 160 LIAGIIACIC 169 (290)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 3333334444
No 144
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.77 E-value=66 Score=41.18 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=4.0
Q ss_pred HHHhccccc
Q 002439 266 FLCCSRFCR 274 (921)
Q Consensus 266 f~~c~~~~~ 274 (921)
|+||||.|+
T Consensus 113 ~fCcCRCc~ 121 (806)
T PF05478_consen 113 CFCCCRCCG 121 (806)
T ss_pred HHhccccCC
Confidence 455553333
No 145
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=22.77 E-value=56 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhhc
Q 002439 769 SLTGTVSKLGHALLKTRDFLNTDMK 793 (921)
Q Consensus 769 ~L~~~v~kL~~~l~k~~~~l~~~~k 793 (921)
.|...+..|-..+..++.++.+.++
T Consensus 706 ~l~~~vs~lla~~~~aq~~l~~~~~ 730 (865)
T KOG4331|consen 706 SLQSSVSRLLADLQGAQPFLRQNPP 730 (865)
T ss_pred hhhHHHHHHHHhhhcchhhhhhccc
Confidence 4555566666666666666655443
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.75 E-value=1.4e+03 Score=29.02 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhh
Q 002439 848 RLFTIVRDFFIMLDKACKQVKDAPKKST 875 (921)
Q Consensus 848 ~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 875 (921)
+|+.-+..|-..++.-..-++++++|..
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444443
No 147
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=6.1e+02 Score=30.81 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHH
Q 002439 801 FHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVK 868 (921)
Q Consensus 801 F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~ 868 (921)
-.+.|..|+++ ++++..+....++...+.++.-||..-....- .=+||-..+..+-++++
T Consensus 613 ~i~e~a~~La~---R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~-----AErdFk~Elq~~~~~~~ 672 (741)
T KOG4460|consen 613 SLREMAERLAD---RYEEAKEKQEDLMNRMKKLLHSFHSELPVLSD-----AERDFKKELQLIPDQLR 672 (741)
T ss_pred HHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhcccccCCcchh-----HHHHHHHHHHHhHHHHH
Confidence 34455555544 44455555666666677777777654432221 12566655555555444
No 148
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=22.55 E-value=29 Score=41.83 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 002439 252 VVTAAVTFVAAALLFLCCSR 271 (921)
Q Consensus 252 ~vta~~~~v~a~llf~~c~~ 271 (921)
.+.++++++++++++.||++
T Consensus 458 ~~~~vi~~illi~l~~cc~~ 477 (501)
T PF00974_consen 458 IAIAVILLILLILLIRCCCR 477 (501)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444445555555555544
No 149
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=22.29 E-value=3.4e+02 Score=32.84 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=23.3
Q ss_pred HHHHHHhhhcccccccccCCCcc-ccccCCC-CCCccccccccCCCCc
Q 002439 118 QTLLHCIRENNLLHHVSRGGGSW-YESLYPQ-PDAPRQNQHLILPRSL 163 (921)
Q Consensus 118 ~~~l~cl~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 163 (921)
+.|.+.+++++++= -..+++-| +.+.-+| -...|=.+.++..|-.
T Consensus 10 ~~L~~ll~~~gi~~-nP~H~eii~lRmT~GwWG~~~Ry~~vri~LQD~ 56 (582)
T PF03276_consen 10 QALTDLLRENGIPR-NPRHGEIIALRMTEGWWGPGDRYQLVRIILQDD 56 (582)
T ss_pred HHHHHHHhccCCCC-CCCCCCEEEEEeccCcCCCccceeEEEEEEECC
Confidence 34666778777542 11233332 2334444 4455666666666664
No 150
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=22.14 E-value=9.5e+02 Score=25.39 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHHHHHHhhhhhh
Q 002439 803 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874 (921)
Q Consensus 803 ~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 874 (921)
..++.=|+.++..+..+.+.+..+-+.++.=+..|.. ....+|=.++.+|+...-.+.+++.+.|...
T Consensus 146 ~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~----~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 146 NSLLSELEEAERRASELKKEFEEVSELIKSELERFER----ERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778887888888888777765566743 2234455677777777777777777777653
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.97 E-value=5.3e+02 Score=26.42 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 807 SFVQNAEGDIMWLLEEEKRIMSLVK 831 (921)
Q Consensus 807 ~Fl~~A~~~v~~L~e~~k~~~~~~k 831 (921)
.+.+..+.++..+.+.++++.+.+.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.95 E-value=7.2e+02 Score=25.47 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=14.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002439 800 GFHETLKSFVQNAEGDIMWLLEEEKRIM 827 (921)
Q Consensus 800 ~F~~~m~~Fl~~A~~~v~~L~e~~k~~~ 827 (921)
++.+.....++..+..+..+.++..++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444
No 153
>PLN03099 PIR Protein PIR; Provisional
Probab=21.69 E-value=1.8e+03 Score=29.63 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=84.6
Q ss_pred ccccccchHHHhhHHHHHhhcCCCHHHHHHhhhc-------CCCCcHHHHHHHHhhCCC---HHHHHHHhh-hcCCCCCC
Q 002439 523 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLE-------GNELPAELIQTLLKMAPT---AEEELKLRL-FNGELSQL 591 (921)
Q Consensus 523 ~~v~lLD~KraqNi~I~L~~lk~s~eei~~aI~~-------~~~L~~e~l~~Ll~~~Pt---~eE~~~l~~-~~gd~~~L 591 (921)
+.++|||+.-.+=..|+-=+-+ ..+.+|+.+.. -+..++..+-+|.+++=- -|+.+..++ ..+|.+..
T Consensus 105 ~t~eVLepEi~KL~~fm~fq~~-Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~lnmfa~LD~LKNmKAsi~NDfS~y 183 (1232)
T PLN03099 105 ETYQVLDLEIGRLREIQRWQSS-AASKLAADMQRFSRPERRINGPTVTHMWSMLKLLDVLLQLDHLKNAKASIPNDFSWY 183 (1232)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHH
Confidence 4577888776554444321111 12223333322 234677777766655443 344443332 35788888
Q ss_pred ChH-HHHHHHHhCCcchhhHhHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcHHH-----HHHHHHH
Q 002439 592 GPA-ERFLKALVDIPFSFKRLEAL-LFMCTLQEEVSATK----------ESFEILEVACKELRNSRLF-----LKLLEAV 654 (921)
Q Consensus 592 ~~a-E~Fl~~l~~Ip~~~~RL~~l-lf~~~f~e~~~~l~----------~~l~~l~~A~~el~~S~~f-----~~lL~~V 654 (921)
-++ .||+..+.+-...++-++-| +|..+=......++ +.|..+..-|-+..+++.. +..|-.|
T Consensus 184 kRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~gyediL~~ivn~C~~~yE~~~yl~p~EKH~LlrV 263 (1232)
T PLN03099 184 KRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVFCLESLESDFVLLYSERHILLRV 263 (1232)
T ss_pred HHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCceecCccceeEEEe
Confidence 899 99999888855555554333 23222222222222 2333444444444443311 1223335
Q ss_pred HHhcccccCCCCCCCeeeeeccccccccccccCCCCeehHHHHH
Q 002439 655 LKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVV 698 (921)
Q Consensus 655 L~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv 698 (921)
+.+|=||=.++.+.+..-||--+|.||..+= ...-.+++.+.
T Consensus 264 m~f~l~L~ds~~k~~~~~~Kri~i~rldkiF--~~~y~I~~~m~ 305 (1232)
T PLN03099 264 LPVLVVLATSSEKEGESLFKRIKINRLINIF--QREYLIVNHMG 305 (1232)
T ss_pred eeeeEEEecccccchHHHhhhccHHHHHHHh--cchHHHHHhHH
Confidence 6777777664434333335555555554332 22234455554
No 154
>PF05749 Rubella_E2: Rubella membrane glycoprotein E2; InterPro: IPR008821 Rubella virus (RV), the sole member of the genus Rubivirus within the family Togaviridae, is a small enveloped, positive strand RNA virus. The nucleocapsid consists of 40S genomic RNA and a single species of capsid protein which is enveloped within a host-derived lipid bilayer containing two viral glycoproteins, E1 (58 kDa) and E2 (42-46 kDa). In virus infected cells, RV matures by budding either at the plasma membrane, or at the internal membranes depending on the cell type and enters adjacent uninfected cells by a membrane fusion process in the endosome, directed by E1-E2 heterodimers. The heterodimer formation is crucial for E1 transport out of the endoplasmic reticulum to the Golgi and plasma membrane. In RV E1, a cysteine at position 82 is crucial for the E1-E2 heterodimer formation and cell surface expression of the two proteins []. This family is found together with IPR008819 from INTERPRO and IPR008820 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=21.61 E-value=70 Score=32.40 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=23.4
Q ss_pred ceehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439 246 TVIIAVVVTAAVTFVAAALLFLCCSRFCRTG 276 (921)
Q Consensus 246 ~~ii~v~vta~~~~v~a~llf~~c~~~~~~~ 276 (921)
++-+.-+++++++++--+|+|..|++-||++
T Consensus 232 alsldhalaaavllvpwvlifmvcrracrrr 262 (267)
T PF05749_consen 232 ALSLDHALAAAVLLVPWVLIFMVCRRACRRR 262 (267)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567778888888888888888888765
No 155
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=21.59 E-value=33 Score=39.32 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=17.4
Q ss_pred cceehhhhHHHHHHHHHHHHHHHHhccc
Q 002439 245 NTVIIAVVVTAAVTFVAAALLFLCCSRF 272 (921)
Q Consensus 245 ~~~ii~v~vta~~~~v~a~llf~~c~~~ 272 (921)
--.|++|+.|+-+++++++-+++|++|+
T Consensus 319 vi~i~~vgLG~P~l~li~Ggl~v~~~r~ 346 (350)
T PF15065_consen 319 VIMIMAVGLGVPLLLLILGGLYVCLRRR 346 (350)
T ss_pred HHHHHHHHhhHHHHHHHHhhheEEEecc
Confidence 3445566666666667777777766543
No 156
>PHA03283 envelope glycoprotein E; Provisional
Probab=21.35 E-value=1.3e+02 Score=36.18 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=9.6
Q ss_pred hcccccchHHHHHHHHH
Q 002439 7 MGVMRRSCFMFLVVLLY 23 (921)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (921)
|+-|+..+++++++|+.
T Consensus 1 ~~ll~~~~~~~~~~l~~ 17 (542)
T PHA03283 1 MELLRAARALAFFALIT 17 (542)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 55666666555555444
No 157
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=21.25 E-value=1e+02 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=19.2
Q ss_pred CCcceehhhhHHHHHHHHHHHHHHHHhc
Q 002439 243 HHNTVIIAVVVTAAVTFVAAALLFLCCS 270 (921)
Q Consensus 243 ~~~~~ii~v~vta~~~~v~a~llf~~c~ 270 (921)
.-+.++||.+++.++...|.+|=+|+.+
T Consensus 19 d~KYa~IGtalGvaisAgFLaLKicmIr 46 (61)
T PF14986_consen 19 DIKYAIIGTALGVAISAGFLALKICMIR 46 (61)
T ss_pred eeeeeeehhHHHHHHHHHHHHHHHHHHH
Confidence 4567889999888866666665544443
No 158
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=21.15 E-value=5.5e+02 Score=25.33 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=25.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002439 800 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYF 837 (921)
Q Consensus 800 ~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF 837 (921)
.|...+...+..-+.++..+.+++.++..+|++-...|
T Consensus 43 ~ys~q~~~l~~qw~~D~qk~ke~eEkl~n~~~qqQK~~ 80 (130)
T PF04803_consen 43 EYSQQFSTLFQQWEADVQKFKEQEEKLSNIFQQQQKLF 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46666666777777777777777777776666544444
No 159
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=20.92 E-value=1.9e+03 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=9.3
Q ss_pred CChHHHHHHHHhCCcchhhHhH
Q 002439 591 LGPAERFLKALVDIPFSFKRLE 612 (921)
Q Consensus 591 L~~aE~Fl~~l~~Ip~~~~RL~ 612 (921)
=++.|.||.=|-+=..+++|=+
T Consensus 565 CaRTDL~F~Pl~gSKLAkKRee 586 (982)
T PF03154_consen 565 CARTDLYFVPLPGSKLAKKREE 586 (982)
T ss_pred ccccceeeeecCccHHhhhhHH
Confidence 3344444444444344444443
No 160
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=20.91 E-value=1.2e+02 Score=29.10 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 002439 804 TLKSFVQNAEGD 815 (921)
Q Consensus 804 ~m~~Fl~~A~~~ 815 (921)
.|..|++..++.
T Consensus 4 ~~~~~~~~i~~~ 15 (133)
T PF08359_consen 4 KMNRFLERIEEA 15 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 161
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.81 E-value=9.4e+02 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=7.7
Q ss_pred ehHHHHHHHHHH
Q 002439 692 TLLHFVVQEIIR 703 (921)
Q Consensus 692 tLLh~lv~~i~~ 703 (921)
.||+.|+..++.
T Consensus 134 ~ll~~il~~ivd 145 (318)
T TIGR00383 134 YLLYDIFDAIID 145 (318)
T ss_pred HHHHHHHHHHHh
Confidence 467777666654
No 162
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=20.50 E-value=3.7e+02 Score=32.55 Aligned_cols=8 Identities=38% Similarity=0.463 Sum_probs=4.2
Q ss_pred HHHhhhcc
Q 002439 497 MIETLFGY 504 (921)
Q Consensus 497 ~lE~lF~~ 504 (921)
-||-.|-.
T Consensus 293 AIeGVfP~ 300 (582)
T PF03276_consen 293 AIEGVFPT 300 (582)
T ss_pred hhcccccC
Confidence 45666643
Done!