Query 002439
Match_columns 921
No_of_seqs 431 out of 1676
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:25:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002439.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1164-1167//hhsearch_pdb/002439hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 1.0 1 1 573.6 38.9 376 456-873 6-401 (483)
2 3obv_E Protein diaphanous homo 1.0 1 1 570.9 37.4 378 458-876 3-392 (457)
3 4eah_A Formin-like protein 3, 1.0 1 1 553.3 32.8 374 457-881 11-394 (402)
4 1ux5_A BNI1 protein; structura 1.0 1 1 529.0 26.5 368 458-874 2-405 (411)
5 1v9d_A Diaphanous protein homo 1.0 1 1 511.6 29.1 320 519-879 3-324 (340)
6 2z73_A Rhodopsin; visual pigme 1.0 1 1 44.4 0.0 70 357-426 376-445 (448)
7 3h0g_A DNA-directed RNA polyme 1.0 1 1 35.4 0.0 32 43-80 54-85 (1752)
8 3h0g_A DNA-directed RNA polyme 1.0 1 1 35.3 0.0 16 55-70 135-150 (1752)
9 2klu_A T-cell surface glycopro 1.0 1 1 25.0 3.4 36 246-282 8-43 (70)
10 1cee_B Wiskott-aldrich syndrom 1.0 1 1 24.1 1.5 36 301-336 1-36 (59)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=1.00 E-value=1 Score=573.56 Aligned_cols=376 Identities=27% Similarity=0.389 Sum_probs=333.8
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCCCC------CCCCC-C------CCCC
Q ss_conf 988999777675431110258888853212356854--5656789853114222222------22469-9------9999
Q 002439 456 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKN------EKKKG-S------SLDT 520 (921)
Q Consensus 456 g~~~~Pk~klK~l~W~kI~~~~~~~TIW~~i~~~~~--~~d~e~lE~lF~~~~~~~~------~~kk~-~------~~~~ 520 (921)
.....|+.+||++||++|..+.+++|||+++++... .+|.++||++|+.+..... .+++. . ...+
T Consensus 6 K~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~k 85 (483)
T 2j1d_G 6 KSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKL 85 (483)
T ss_dssp CCCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC---------------------------
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999988969348981012598667587312114469999999985120334333444332333466432222235
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 996322254588766998786228898999996430898---86999999993099979999996510877778937999
Q 002439 521 GPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE---LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERF 597 (921)
Q Consensus 521 ~~k~i~iLD~kraqNi~I~L~~lk~s~eei~~aI~~~~~---L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqF 597 (921)
+++.++|||+||||||+|+|++|++++++|++||+++|. |+.|.|+.|++++||.||+..|+.|.+|.+.|+++|||
T Consensus 86 k~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqF 165 (483)
T 2j1d_G 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRF 165 (483)
T ss_dssp --CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHHH
T ss_conf 77743227778898999998437989899999998168524589999999998499979999998725682314889999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 99980775336576799999879999999999999999999997710999999999997154456898887701430322
Q 002439 598 LKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT 677 (921)
Q Consensus 598 l~~l~~Ip~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~rg~A~GFkL~s 677 (921)
++.|+.||+|..||+||+|+.+|++.+.++.+.+.++..||++|++|+.|+.||++||++|||||+| .||+|+||+|++
T Consensus 166 l~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~s 244 (483)
T 2j1d_G 166 LFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISS 244 (483)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGG
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCCEEEEHHH
T ss_conf 9999577648888999999999999999999999999999999983568999999999986553368-777732351689
Q ss_pred CCCCCCCCCC-CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0121243358-998015799999999844256886421013466666113577520584015899842123442125667
Q 002439 678 LLKLSDVKGV-DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSEL 756 (921)
Q Consensus 678 L~KL~d~Ks~-d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~~v~~l~~eL 756 (921)
|.||.|||++ |+++|||||||+.+.+++ ++ +..|.+||
T Consensus 245 L~KL~d~Ks~~d~k~TLLhylv~~v~~~~-------------------p~----------------------l~~f~~eL 283 (483)
T 2j1d_G 245 LNKIADTKSSIDKNITLLHYLITIVENKY-------------------PS----------------------VLNLNEEL 283 (483)
T ss_dssp GGGGGGSBCSSCTTCBHHHHHHHHHHHHC-------------------GG----------------------GGGHHHHT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHC-------------------CH----------------------HHCHHHHH
T ss_conf 98652020578998649999999999748-------------------30----------------------62227777
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998642103457699999979999989987432001-58897224469999999899999999999999999997234
Q 002439 757 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD 835 (921)
Q Consensus 757 ~~v~kAa~id~d~L~~~v~kL~~~l~k~~~~l~~~~k~-~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~k~i~~~~k~l~~ 835 (921)
.+|.+|++++++.|..++.+|..++..++..++..-.. .+.++.|..+|..|+..|+.++..|...++++...|++++.
T Consensus 284 ~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 363 (483)
T 2j1d_G 284 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 363 (483)
T ss_dssp TTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61888732899999999999999999999999986526887200589999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23466454520002045999999999999999765225
Q 002439 836 YFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 873 (921)
Q Consensus 836 YFggd~~k~e~~~fF~iv~~Fl~~l~ka~kEv~~~~kr 873 (921)
|||+++.+..+++||++|.+|+..|++|++|+.+.+++
T Consensus 364 yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~~~~ 401 (483)
T 2j1d_G 364 HFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKK 401 (483)
T ss_dssp HTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93989787889999999999999999999999999999
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=1.00 E-value=1 Score=570.88 Aligned_cols=378 Identities=28% Similarity=0.392 Sum_probs=335.9
Q ss_pred CCCCCCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCC--CHHHHHHHHCCCCCCCCCCCC-------CCCCCCCCCCCCC
Q ss_conf 899977767543111025888-885321235685456--567898531142222222246-------9999999963222
Q 002439 458 ANAPKTKLKPFFWDKVLANPD-NSMVWHQIKSGSFQF--NEEMIETLFGYSEKSKNEKKK-------GSSLDTGPQYIQI 527 (921)
Q Consensus 458 ~~~Pk~klK~l~W~kI~~~~~-~~TIW~~i~~~~~~~--d~e~lE~lF~~~~~~~~~~kk-------~~~~~~~~k~i~i 527 (921)
.+.|+.+||++||++|..+.+ ++|||.++++..+.. .++.||.+|+.+......+++ .....++++.|+|
T Consensus 3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~l 82 (457)
T 3obv_E 3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKV 82 (457)
T ss_dssp CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSS
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 89999997088753578655678850000762113674589999988545655434555544453321112367863575
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5458876699878622889899999643089--88699999999309997999999651087777893799999980775
Q 002439 528 IDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIP 605 (921)
Q Consensus 528 LD~kraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl~~l~~Ip 605 (921)
||+||||||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.++...|+.+|||++.|++||
T Consensus 83 LD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~Ip 162 (457)
T 3obv_E 83 LDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVP 162 (457)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSST
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCC
T ss_conf 67778868999983369899999999993883547999999999869798999999982467200587999999997656
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 33657679999987999999999999999999999771099999999999715445689888770143032201212433
Q 002439 606 FSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVK 685 (921)
Q Consensus 606 ~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~K 685 (921)
++..||+||+|+.+|++.+.++.+.+.++..||++|++|..|+.||++||++|||||+|+++|+|+||+|++|.||.|||
T Consensus 163 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~K 242 (457)
T 3obv_E 163 RLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK 242 (457)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 48999999999998899999999999999999999870677999999999974250168867774357337888777500
Q ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58998015799999999844256886421013466666113577520584015899842123442125667999986421
Q 002439 686 GVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAI 765 (921)
Q Consensus 686 s~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~v~kAa~i 765 (921)
++|+++|||||||+.+.++ |++ +..|.+||.+|.+|++|
T Consensus 243 s~d~k~TLLh~l~~~v~~~------------------------------------~p~-----l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 243 SADQKMTLLHFLAELCEND------------------------------------HPE-----VLKFPDELAHVEKASRV 281 (457)
T ss_dssp CSSTTCBHHHHHHHHHHHH------------------------------------CGG-----GGGHHHHCTTHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHC------------------------------------CCC-----CCCCHHHHHHHHHHCCC
T ss_conf 6788841899999999970------------------------------------830-----13772242437765127
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03457699999979999989987432001588972244699999998999999999999999999972342346645452
Q 002439 766 DADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 845 (921)
Q Consensus 766 d~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~k~i~~~~k~l~~YFggd~~k~e 845 (921)
+++.|..++.+|..++..++..++......+.++.|..+|..|+..|+.++..|...++++...|++++.|||+++.+..
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~ 361 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS 361 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999999999844577341477999999999999999999999999999999999998577978799
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0002045999999999999999765225446
Q 002439 846 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTK 876 (921)
Q Consensus 846 ~~~fF~iv~~Fl~~l~ka~kEv~~~~kr~~k 876 (921)
+++||++|.+|+.+|.+|++|+.+.++.+++
T Consensus 362 ~~eFF~~~~~F~~~fkkA~~eN~~r~e~eek 392 (457)
T 3obv_E 362 VEEFFMDLHNFRNMFLQAVKENQKRRETEEK 392 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=1.00 E-value=1 Score=553.32 Aligned_cols=374 Identities=23% Similarity=0.382 Sum_probs=329.0
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCHH
Q ss_conf 88999777675431110258888853212356854--56567898531142222222---24699999999632225458
Q 002439 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE---KKKGSSLDTGPQYIQIIDQK 531 (921)
Q Consensus 457 ~~~~Pk~klK~l~W~kI~~~~~~~TIW~~i~~~~~--~~d~e~lE~lF~~~~~~~~~---~kk~~~~~~~~k~i~iLD~k 531 (921)
....|+.+||++||++|..+.+.+|||+++++..+ .+|.++||++|+.+...... ..+.....++++.++|||+|
T Consensus 11 k~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~k 90 (402)
T 4eah_A 11 KPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEAN 90 (402)
T ss_dssp CCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCHH
T ss_pred CCCCCCCCCCCCCCEECCHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEECCHH
T ss_conf 99998877778685459767535860557760343045689999999741246776552000023334688712557778
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCC
Q ss_conf 876699878622889899999643089--88699999999309997999999651087---7778937999999807753
Q 002439 532 KAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE---LSQLGPAERFLKALVDIPF 606 (921)
Q Consensus 532 raqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d---~~~L~~aEqFl~~l~~Ip~ 606 (921)
|+|||+|+|+++++++++|++||+++| .|+.|.|+.|++++||.+|+..++.|.++ .+.|+++|||++.|+.||+
T Consensus 91 ra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip~ 170 (402)
T 4eah_A 91 RAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVER 170 (402)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCC
T ss_conf 99899999863798999999999808834489999999986098979999999864357864441679999999973563
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 36576799999879999999999999999999997710999999999997154456898887701430322012124335
Q 002439 607 SFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 686 (921)
Q Consensus 607 ~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks 686 (921)
|..||+||+|+.+|++.+.++.+.+..+..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|||+
T Consensus 171 ~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks 249 (402)
T 4eah_A 171 LTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTKS 249 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-CCCCCCEEEHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999999999871488999999999874132678-777623241788888884457
Q ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89980157999999998442568864210134666661135775205840158998421234421256679999864210
Q 002439 687 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 766 (921)
Q Consensus 687 ~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~v~kAa~id 766 (921)
+|+++|||||||+.+.++ |++ +.+|.+||.+|.+|++++
T Consensus 250 ~d~k~TLLh~l~~~~~~~------------------------------------~p~-----l~~f~~eL~~v~~Aa~v~ 288 (402)
T 4eah_A 250 TDRKMTLLHFIALTVKEK------------------------------------YPE-----LANFWQELHFVEKAAAVS 288 (402)
T ss_dssp TTSSSBHHHHHHHHHHHH------------------------------------CGG-----GGTCSTTCCSHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHH------------------------------------HHH-----HHHHHHHHHHHHHHHCCC
T ss_conf 889862999999999963------------------------------------089-----987766553399896499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34576999999799999899874320015889722446999999989999999999999999999723423466454520
Q 002439 767 ADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG 846 (921)
Q Consensus 767 ~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~k~i~~~~k~l~~YFggd~~k~e~ 846 (921)
++.|..++.+|..++..++..+.. .+ ...|..|+..|+.++..|..+++++.+.|++++.|||+++.+..+
T Consensus 289 ~~~l~~d~~~L~~~l~~~~~e~~~------~d---~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~~~~ 359 (402)
T 4eah_A 289 LENVLLDVKELGRGMELIRRECSI------HD---NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTPP 359 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------TC---CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 999999999999999999998530------32---489999999999999999999999999999999994889787999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00204599999999999999976522544654210
Q 002439 847 LRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKE 881 (921)
Q Consensus 847 ~~fF~iv~~Fl~~l~ka~kEv~~~~kr~~k~~kke 881 (921)
.+||++|.+|+..|.+|++|+++.+++++..+++.
T Consensus 360 ~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~~~~~ 394 (402)
T 4eah_A 360 SVFFPVFVRFIRSYKEAEQENEARKKQEEVMREKQ 394 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999987642
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=1.00 E-value=1 Score=528.98 Aligned_cols=368 Identities=20% Similarity=0.281 Sum_probs=313.7
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC--C----CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 89997776754311102588888532123568545--6----56789853114222222224699999999632225458
Q 002439 458 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQ--F----NEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQK 531 (921)
Q Consensus 458 ~~~Pk~klK~l~W~kI~~~~~~~TIW~~i~~~~~~--~----d~e~lE~lF~~~~~~~~~~kk~~~~~~~~k~i~iLD~k 531 (921)
...|+.+||++||++|.. .++|||+++++..+. + |.++||++|+.+.......+ ..++++.++|||+|
T Consensus 2 ~p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~~~----k~~~~~~v~lLd~k 75 (411)
T 1ux5_A 2 YPRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASK----RKEDLQKITFLSRD 75 (411)
T ss_dssp CCCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHH----HHHTTTSBCCSCHH
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC----CCCCCCEEEECCHH
T ss_conf 999999988868415999--999907677617778765110229999998434656543446----66777702524767
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHCCCC--CCH-HHHH------------HHH-HHCCCHHHHH------HHHHHCCCC
Q ss_conf 876699878622-8898999996430898--869-9999------------999-3099979999------996510877
Q 002439 532 KAQNLSIMLRAL-NVTLEEVCDALLEGNE--LPA-ELIQ------------TLL-KMAPTAEEEL------KLRLFNGEL 588 (921)
Q Consensus 532 raqNi~I~L~~l-k~s~eei~~aI~~~~~--L~~-e~l~------------~Ll-~~~Pt~eE~~------~l~~~~~d~ 588 (921)
|+||++|+|++| ++++++|++||+++|. |+. ..++ +|+ +++|+.+|+. .++.|.||.
T Consensus 76 raqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~d~ 155 (411)
T 1ux5_A 76 ISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDP 155 (411)
T ss_dssp HHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 89989899874179899999999980596536978999870236777667899985389944678887788765336995
Q ss_pred CCCCHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77893799999980-77-53365767999998799999999999999999999977109999999999971544568988
Q 002439 589 SQLGPAERFLKALV-DI-PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTF 666 (921)
Q Consensus 589 ~~L~~aEqFl~~l~-~I-p~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~ 666 (921)
+.|+++|||++.++ .| +++..||+||+|+.+|++.+.++.+.+.++..||++|++|+.|++||++||++|||||+|+.
T Consensus 156 ~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~ 235 (411)
T 1ux5_A 156 NDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK 235 (411)
T ss_dssp TTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 66788889999999850266999999999999889999999999999999999998465899999999998380248998
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 87701430322012124335899801579999999984425688642101346666611357752058401589984212
Q 002439 667 RGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 746 (921)
Q Consensus 667 rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl 746 (921)
+|+||+|++|.||.|||++|+++|||||||+.+.++ |++
T Consensus 236 --~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~------------------------------------~p~--- 274 (411)
T 1ux5_A 236 --QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN------------------------------------YPS--- 274 (411)
T ss_dssp --CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH------------------------------------CGG---
T ss_pred --CEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH------------------------------------CCC---
T ss_conf --805762468888887008889856999999999986------------------------------------920---
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-H---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 344212566799998642103457699999979999989987432-0---015889722446999999989999999999
Q 002439 747 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD-M---KNLGENSGFHETLKSFVQNAEGDIMWLLEE 822 (921)
Q Consensus 747 ~~v~~l~~eL~~v~kAa~id~d~L~~~v~kL~~~l~k~~~~l~~~-~---k~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~ 822 (921)
+.+|.+||.+|.+|++++++.|..++.+|..++.+++..++.. + ...+.++.|...|..|+..|+.++..|.+.
T Consensus 275 --l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~ 352 (411)
T 1ux5_A 275 --FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDE 352 (411)
T ss_dssp --GGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --215400354499997789999999999999999999999983257752235852378999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999972342346645-45200020459999999999999997652254
Q 002439 823 EKRIMSLVKSTGDYFHGNAG-KDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874 (921)
Q Consensus 823 ~k~i~~~~k~l~~YFggd~~-k~e~~~fF~iv~~Fl~~l~ka~kEv~~~~kr~ 874 (921)
++++...|++++.|||+++. +..+.+||++|.+|+..|++|++|+.+.++.+
T Consensus 353 ~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~~ 405 (411)
T 1ux5_A 353 VKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE 405 (411)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999488987878989999999999999999999999999999
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=1.00 E-value=1 Score=511.58 Aligned_cols=320 Identities=29% Similarity=0.401 Sum_probs=294.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 9999632225458876699878622889899999643089--88699999999309997999999651087777893799
Q 002439 519 DTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAER 596 (921)
Q Consensus 519 ~~~~k~i~iLD~kraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEq 596 (921)
+++++.++|||+||||||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.+|+..++.|.++.+.|+++||
T Consensus 3 kkk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~Eq 82 (340)
T 1v9d_A 3 KKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQ 82 (340)
T ss_dssp ---CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHH
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCHHHH
T ss_conf 87778015547788858999980069799999999995882009999999997049998999999982188422688989
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 99998077533657679999987999999999999999999999771099999999999715445689888770143032
Q 002439 597 FLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLD 676 (921)
Q Consensus 597 Fl~~l~~Ip~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~rg~A~GFkL~ 676 (921)
|++.|+.||+|..||+||+|+.+|++.+.++.+.+.++..||++|++|+.|++||++||++|||||+|+++|+|+||+|+
T Consensus 83 F~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~ 162 (340)
T 1v9d_A 83 FGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNIS 162 (340)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
T ss_conf 99999778977999999999966899999999999999999999984858999999999975857888887763343148
Q ss_pred CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 20121243358998015799999999844256886421013466666113577520584015899842123442125667
Q 002439 677 TLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSEL 756 (921)
Q Consensus 677 sL~KL~d~Ks~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~~v~~l~~eL 756 (921)
+|.||.|||++|+++|||||||+.+..+ .++ +..|.+||
T Consensus 163 sL~KL~d~Ks~d~k~TLLh~lv~~~~~~-------------------~p~----------------------l~~f~~eL 201 (340)
T 1v9d_A 163 FLCKLRDTKSADQKMTLLHFLAELCEND-------------------HPE----------------------VLKFPDEL 201 (340)
T ss_dssp CHHHHHHSBCSSTTSBHHHHHHHHHHHS-------------------CCT----------------------TSSGGGGC
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHH-------------------CCH----------------------HCCCHHHH
T ss_conf 8886554107899762999999999973-------------------905----------------------21663578
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998642103457699999979999989987432001588972244699999998999999999999999999972342
Q 002439 757 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDY 836 (921)
Q Consensus 757 ~~v~kAa~id~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~k~i~~~~k~l~~Y 836 (921)
.+|.+|++++++.|..++.+|..++..++..++...+..++++.|..+|..|+..|+.++..|...++++...|++++.|
T Consensus 202 ~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~y 281 (340)
T 1v9d_A 202 AHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDY 281 (340)
T ss_dssp TTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85999975779999999999999999999999854035540088999988899999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3466454520002045999999999999999765225446542
Q 002439 837 FHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLK 879 (921)
Q Consensus 837 Fggd~~k~e~~~fF~iv~~Fl~~l~ka~kEv~~~~kr~~k~~k 879 (921)
||+++.+..+++||++|.+|+.+|++|++|+++.++.+++.++
T Consensus 282 fged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e~eek~~~ 324 (340)
T 1v9d_A 282 FVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRR 324 (340)
T ss_dssp TTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2989887999999999999999999999999999999999999
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=1.00 E-value=1 Score=44.40 Aligned_cols=70 Identities=24% Similarity=0.418 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999
Q 002439 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426 (921)
Q Consensus 357 ppp~~~~p~ppppp~~~~p~pppppppppp~pp~ppPppp~~p~p~pppppp~p~PPPpppp~~~~~ppp 426 (921)
......++++++.|+...++|++++|+++.+++..||++.|++..+++++++++++.++++|+++.++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (448)
T 2z73_A 376 AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQA 445 (448)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6678899999999878999876788988988789897697989989789898989999888778999999
No 7
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=35.37 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=19.9
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10589766563245668887621223447887520376
Q 002439 43 KVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNL 80 (921)
Q Consensus 43 ~~~~~~~~~~~~~~~e~~w~~c~~d~~~~~~~~~~~~~ 80 (921)
.++||.-|..|.+ ..|-.|++++ .++-|||.+
T Consensus 54 Gl~D~rlG~~~~~---~~C~TCg~~~---~~CpGHFGH 85 (1752)
T 3h0g_A 54 GLLDPRLGTIDRQ---FKCQTCGETM---ADCPGHFGH 85 (1752)
T ss_dssp SSSSSSCCCSSSS---CCCTTSCCSS---SSCCCCCEE
T ss_pred CCCCCCCCCCCCC---CCCCCCCCCC---CCCCCCCEE
T ss_conf 9757123688999---9789999987---837885146
No 8
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4566888762122344
Q 002439 55 NLAQLLWFSCGIDLIR 70 (921)
Q Consensus 55 ~~~e~~w~~c~~d~~~ 70 (921)
...+.+|-.|+.-.++
T Consensus 135 ~r~~~V~~~ck~k~~C 150 (1752)
T 3h0g_A 135 NRLNAVWNVCKTKMVC 150 (1752)
T ss_dssp TTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999981435446
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1201466879999999999998750444579999889
Q 002439 246 TVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQN 282 (921)
Q Consensus 246 ~~ii~v~vta~~~~i~a~ll~~~c~~~~~~~~~~r~n 282 (921)
..+. +++++++.+++.+-+|.+||-+|+++++...+
T Consensus 8 p~~L-ivlGg~~~lll~~glcI~ccvkcrhRrrqAeR 43 (70)
T 2klu_A 8 SMAL-IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAER 43 (70)
T ss_dssp SSHH-HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999-99968999999999999972489989999999
No 10
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 971000236888998876777898789899999999
Q 002439 301 NSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLP 336 (921)
Q Consensus 301 ~s~~~K~g~~s~~~~~~~~~~~~~~~~~~~~~~~~p 336 (921)
..+..|.+++.|.+|.|..|+||++..+|.....+|
T Consensus 1 ~~k~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp 36 (59)
T 1cee_B 1 KKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDP 36 (59)
T ss_dssp CCCCCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCH
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCH
T ss_conf 987778866699988874342307887745688998
Done!