Query 002440
Match_columns 921
No_of_seqs 114 out of 128
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 00:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4673 Transcription factor T 100.0 4E-116 8E-121 979.8 68.3 851 1-908 1-913 (961)
2 PF12329 TMF_DNA_bd: TATA elem 99.5 2.2E-14 4.9E-19 126.4 8.9 69 435-503 2-70 (74)
3 KOG4673 Transcription factor T 99.2 3.6E-05 7.9E-10 90.3 61.8 329 439-781 410-783 (961)
4 PRK02224 chromosome segregatio 99.2 4.2E-05 9E-10 92.2 58.2 23 463-485 374-396 (880)
5 KOG0161 Myosin class II heavy 99.0 0.00023 4.9E-09 92.3 59.1 46 439-484 1070-1115(1930)
6 TIGR00606 rad50 rad50. This fa 98.8 0.0022 4.7E-08 81.7 61.5 56 853-908 987-1044(1311)
7 PRK02224 chromosome segregatio 98.8 0.0014 3E-08 79.4 61.7 125 567-697 486-616 (880)
8 PRK03918 chromosome segregatio 98.7 0.003 6.4E-08 76.3 62.3 23 463-485 304-326 (880)
9 PF00038 Filament: Intermediat 98.6 0.0014 2.9E-08 70.4 41.1 163 568-752 122-285 (312)
10 PF12128 DUF3584: Protein of u 98.6 0.0082 1.8E-07 76.1 59.8 122 640-761 595-724 (1201)
11 TIGR00606 rad50 rad50. This fa 98.5 0.011 2.3E-07 75.6 59.9 173 567-745 913-1091(1311)
12 PF12325 TMF_TATA_bd: TATA ele 98.5 1.8E-07 4E-12 89.9 7.5 57 852-908 18-77 (120)
13 KOG0161 Myosin class II heavy 98.5 0.015 3.2E-07 76.4 62.3 78 407-487 936-1013(1930)
14 PRK03918 chromosome segregatio 98.5 0.0092 2E-07 72.2 63.1 11 909-919 857-867 (880)
15 TIGR02169 SMC_prok_A chromosom 98.2 0.039 8.4E-07 68.0 50.2 49 858-906 675-723 (1164)
16 COG1196 Smc Chromosome segrega 98.2 0.058 1.3E-06 68.4 47.4 144 341-487 164-309 (1163)
17 TIGR02169 SMC_prok_A chromosom 98.1 0.057 1.2E-06 66.6 52.9 25 367-391 181-205 (1164)
18 KOG0994 Extracellular matrix g 98.1 0.075 1.6E-06 66.5 48.8 102 326-428 1208-1331(1758)
19 PF10174 Cast: RIM-binding pro 98.1 0.07 1.5E-06 65.4 53.4 273 595-908 238-523 (775)
20 KOG4674 Uncharacterized conser 98.0 0.15 3.2E-06 66.9 53.7 55 854-908 1233-1287(1822)
21 COG1196 Smc Chromosome segrega 98.0 0.15 3.2E-06 64.9 48.9 92 649-740 401-492 (1163)
22 PF10174 Cast: RIM-binding pro 97.9 0.15 3.2E-06 62.7 54.3 20 567-586 375-394 (775)
23 TIGR02168 SMC_prok_B chromosom 97.9 0.15 3.3E-06 62.6 71.1 43 854-896 898-940 (1179)
24 KOG4674 Uncharacterized conser 97.9 0.27 5.9E-06 64.6 59.8 144 340-488 743-887 (1822)
25 PF00261 Tropomyosin: Tropomyo 97.8 0.03 6.4E-07 59.2 27.5 73 580-656 161-233 (237)
26 KOG0612 Rho-associated, coiled 97.8 0.28 6.1E-06 62.1 50.9 140 589-746 668-810 (1317)
27 KOG0971 Microtubule-associated 97.6 0.38 8.3E-06 59.5 38.2 31 471-501 229-259 (1243)
28 PF12128 DUF3584: Protein of u 97.6 0.49 1.1E-05 60.7 71.5 31 396-426 302-332 (1201)
29 PF00261 Tropomyosin: Tropomyo 97.6 0.071 1.5E-06 56.4 27.4 113 551-664 80-195 (237)
30 TIGR02168 SMC_prok_B chromosom 97.4 0.68 1.5E-05 57.1 72.6 11 63-73 26-36 (1179)
31 PF07888 CALCOCO1: Calcium bin 97.4 0.57 1.2E-05 55.7 48.0 36 451-486 212-247 (546)
32 PF09726 Macoilin: Transmembra 97.3 0.21 4.6E-06 60.8 30.2 16 463-478 422-437 (697)
33 PF07888 CALCOCO1: Calcium bin 97.2 0.77 1.7E-05 54.6 47.3 15 188-202 27-41 (546)
34 PF09726 Macoilin: Transmembra 97.2 0.99 2.1E-05 55.2 39.5 81 407-489 488-575 (697)
35 KOG0994 Extracellular matrix g 97.2 1.3 2.9E-05 56.2 44.2 76 670-745 1595-1670(1758)
36 KOG0976 Rho/Rac1-interacting s 97.2 1.1 2.5E-05 55.0 49.0 66 608-677 311-376 (1265)
37 KOG0996 Structural maintenance 97.1 1.5 3.3E-05 55.8 44.8 86 402-487 262-348 (1293)
38 PF09755 DUF2046: Uncharacteri 97.1 0.7 1.5E-05 51.6 34.0 260 345-621 23-294 (310)
39 KOG0250 DNA repair protein RAD 97.0 1.8 3.9E-05 54.8 35.2 180 430-635 308-490 (1074)
40 KOG0612 Rho-associated, coiled 96.9 2.2 4.8E-05 54.6 38.8 12 32-43 115-126 (1317)
41 KOG0977 Nuclear envelope prote 96.9 1.5 3.3E-05 52.3 37.2 79 348-434 41-119 (546)
42 PF01576 Myosin_tail_1: Myosin 96.9 0.00023 5E-09 87.1 0.0 81 346-428 325-405 (859)
43 PRK04778 septation ring format 96.9 1.6 3.5E-05 51.8 45.0 56 568-624 322-377 (569)
44 KOG4643 Uncharacterized coiled 96.8 2.5 5.4E-05 53.3 52.8 91 568-660 413-503 (1195)
45 KOG0977 Nuclear envelope prote 96.8 2 4.3E-05 51.4 38.4 86 622-707 244-337 (546)
46 PF00038 Filament: Intermediat 96.7 1.2 2.5E-05 48.2 36.9 168 567-766 100-274 (312)
47 PRK04863 mukB cell division pr 96.7 4 8.7E-05 53.9 52.0 96 588-700 513-613 (1486)
48 PF05622 HOOK: HOOK protein; 96.7 0.0011 2.4E-08 79.4 3.4 70 545-615 321-390 (713)
49 PRK11637 AmiB activator; Provi 96.6 1.9 4.2E-05 49.2 33.1 11 569-579 81-91 (428)
50 PRK11637 AmiB activator; Provi 96.6 2 4.2E-05 49.2 30.0 40 568-607 94-133 (428)
51 COG4942 Membrane-bound metallo 96.6 2.2 4.7E-05 49.6 30.6 73 342-423 38-110 (420)
52 KOG0976 Rho/Rac1-interacting s 96.6 3.2 7E-05 51.4 50.4 34 869-902 605-641 (1265)
53 KOG0996 Structural maintenance 96.4 5.1 0.00011 51.4 44.9 111 591-705 443-553 (1293)
54 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.3 0.7 1.5E-05 45.1 19.6 68 554-632 64-131 (132)
55 PF15070 GOLGA2L5: Putative go 96.2 4.8 0.0001 48.9 38.8 28 885-912 476-504 (617)
56 PF01576 Myosin_tail_1: Myosin 96.2 0.0014 2.9E-08 80.6 0.0 78 567-648 353-433 (859)
57 PRK04778 septation ring format 96.0 5.1 0.00011 47.8 44.5 286 369-681 28-339 (569)
58 PRK09039 hypothetical protein; 96.0 0.73 1.6E-05 51.8 20.2 7 869-875 284-290 (343)
59 PRK11281 hypothetical protein; 95.9 2.1 4.6E-05 54.9 26.2 118 592-710 84-215 (1113)
60 KOG1029 Endocytic adaptor prot 95.8 7.4 0.00016 48.3 32.5 86 592-678 434-519 (1118)
61 PF06160 EzrA: Septation ring 95.7 6.5 0.00014 46.9 45.2 284 369-679 24-333 (560)
62 PRK04863 mukB cell division pr 95.6 13 0.00027 49.6 46.7 64 628-692 590-664 (1486)
63 PF05557 MAD: Mitotic checkpoi 95.3 0.16 3.4E-06 61.6 12.8 35 671-705 501-535 (722)
64 COG4942 Membrane-bound metallo 95.1 8.8 0.00019 44.8 33.1 34 571-604 172-205 (420)
65 PRK10929 putative mechanosensi 95.1 8.8 0.00019 49.6 27.3 88 592-680 69-158 (1109)
66 PF05701 WEMBL: Weak chloropla 95.0 10 0.00022 45.0 56.7 71 456-529 117-189 (522)
67 PF06160 EzrA: Septation ring 94.8 12 0.00026 44.8 46.2 118 560-689 310-430 (560)
68 TIGR03007 pepcterm_ChnLen poly 94.8 10 0.00022 43.8 24.6 13 595-607 204-216 (498)
69 PRK01156 chromosome segregatio 94.7 16 0.00035 45.5 62.0 16 595-610 529-544 (895)
70 TIGR01005 eps_transp_fam exopo 94.6 15 0.00033 44.8 26.6 16 568-583 199-214 (754)
71 KOG1853 LIS1-interacting prote 94.5 5.1 0.00011 44.2 20.0 128 567-698 24-158 (333)
72 PRK09039 hypothetical protein; 94.5 4.2 9.1E-05 45.8 20.2 72 599-688 113-187 (343)
73 KOG0963 Transcription factor/C 94.4 16 0.00035 44.4 38.6 68 343-417 16-83 (629)
74 KOG0995 Centromere-associated 94.3 16 0.00035 44.1 39.4 101 671-779 437-541 (581)
75 KOG1003 Actin filament-coating 94.3 8.8 0.00019 40.9 25.5 178 465-650 3-195 (205)
76 PF05557 MAD: Mitotic checkpoi 94.2 0.053 1.1E-06 65.5 5.1 47 862-908 604-650 (722)
77 PHA02562 46 endonuclease subun 94.0 15 0.00033 42.7 29.6 24 463-486 178-201 (562)
78 KOG2129 Uncharacterized conser 93.7 18 0.00039 42.4 23.4 22 403-426 98-119 (552)
79 PF14662 CCDC155: Coiled-coil 93.7 9.9 0.00021 40.4 19.6 137 342-485 43-191 (193)
80 COG1842 PspA Phage shock prote 93.7 12 0.00026 40.3 22.0 84 577-666 102-187 (225)
81 KOG4643 Uncharacterized coiled 93.7 28 0.00061 44.6 47.1 32 349-380 43-74 (1195)
82 TIGR02680 conserved hypothetic 93.6 34 0.00073 45.3 36.4 55 591-645 810-865 (1353)
83 PHA02562 46 endonuclease subun 93.5 18 0.0004 42.0 31.6 18 510-527 172-189 (562)
84 COG0419 SbcC ATPase involved i 93.5 28 0.0006 43.9 59.6 15 60-74 25-39 (908)
85 TIGR02680 conserved hypothetic 93.1 40 0.00086 44.7 37.0 66 573-638 796-862 (1353)
86 KOG2129 Uncharacterized conser 93.1 8.9 0.00019 44.8 19.5 165 343-511 137-323 (552)
87 COG1579 Zn-ribbon protein, pos 92.9 17 0.00036 39.8 23.2 69 552-620 106-174 (239)
88 PF09730 BicD: Microtubule-ass 92.6 35 0.00075 42.6 27.5 245 647-905 29-320 (717)
89 PF15450 DUF4631: Domain of un 92.5 30 0.00065 41.6 43.6 43 625-667 374-416 (531)
90 KOG1029 Endocytic adaptor prot 92.2 40 0.00086 42.4 37.8 17 143-159 79-95 (1118)
91 PF05483 SCP-1: Synaptonemal c 92.0 40 0.00086 41.8 59.0 128 623-757 530-664 (786)
92 PF08317 Spc7: Spc7 kinetochor 91.9 25 0.00053 39.3 26.0 102 640-741 144-249 (325)
93 PF05667 DUF812: Protein of un 91.9 38 0.00082 41.4 33.9 47 340-386 326-372 (594)
94 PF06705 SF-assemblin: SF-asse 91.6 22 0.00047 38.1 33.9 138 570-710 70-220 (247)
95 PF08317 Spc7: Spc7 kinetochor 91.4 28 0.0006 39.0 21.9 35 673-707 209-243 (325)
96 PF12718 Tropomyosin_1: Tropom 91.2 18 0.00039 36.3 17.7 76 343-424 15-90 (143)
97 PF04849 HAP1_N: HAP1 N-termin 91.1 31 0.00068 39.0 25.5 115 343-487 63-181 (306)
98 PF05701 WEMBL: Weak chloropla 91.1 40 0.00087 40.2 52.3 23 339-361 31-53 (522)
99 KOG0971 Microtubule-associated 91.1 56 0.0012 41.8 48.9 33 340-376 223-255 (1243)
100 PF10473 CENP-F_leu_zip: Leuci 91.1 19 0.00042 36.5 18.3 114 625-763 22-135 (140)
101 PF05622 HOOK: HOOK protein; 91.0 0.065 1.4E-06 64.7 0.0 44 340-383 244-287 (713)
102 PRK01156 chromosome segregatio 90.9 51 0.0011 41.2 58.8 18 371-388 306-323 (895)
103 KOG0250 DNA repair protein RAD 90.8 62 0.0014 41.9 36.8 34 673-706 401-434 (1074)
104 COG0419 SbcC ATPase involved i 90.8 55 0.0012 41.3 60.8 33 628-665 482-514 (908)
105 PRK11281 hypothetical protein; 90.4 70 0.0015 41.9 45.1 75 602-676 253-330 (1113)
106 PF04849 HAP1_N: HAP1 N-termin 90.2 20 0.00044 40.4 18.1 89 371-459 168-262 (306)
107 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.7 22 0.00047 34.9 18.5 28 733-764 102-129 (132)
108 PF12718 Tropomyosin_1: Tropom 89.6 24 0.00053 35.4 20.6 50 649-698 77-126 (143)
109 PF15070 GOLGA2L5: Putative go 89.2 64 0.0014 39.7 47.6 59 351-421 6-64 (617)
110 TIGR03017 EpsF chain length de 89.1 46 0.001 37.9 26.2 41 649-689 258-298 (444)
111 KOG0980 Actin-binding protein 89.0 78 0.0017 40.4 30.0 117 549-673 344-466 (980)
112 TIGR03007 pepcterm_ChnLen poly 88.3 56 0.0012 37.9 23.3 15 624-638 279-293 (498)
113 KOG0999 Microtubule-associated 88.3 71 0.0015 39.0 25.1 120 567-700 12-134 (772)
114 TIGR01843 type_I_hlyD type I s 87.8 50 0.0011 36.7 22.2 19 595-613 81-99 (423)
115 PF12325 TMF_TATA_bd: TATA ele 87.7 16 0.00035 36.0 13.6 90 340-452 14-103 (120)
116 PF04912 Dynamitin: Dynamitin 87.6 45 0.00098 38.1 19.0 70 563-634 94-178 (388)
117 PF05010 TACC: Transforming ac 87.1 47 0.001 35.7 25.5 100 369-473 29-132 (207)
118 PF05010 TACC: Transforming ac 86.9 48 0.001 35.6 28.2 166 461-660 4-169 (207)
119 PF10498 IFT57: Intra-flagella 86.5 24 0.00053 40.4 16.1 128 570-704 191-318 (359)
120 PRK10884 SH3 domain-containing 86.3 14 0.00031 39.3 13.3 19 622-640 88-106 (206)
121 PF13514 AAA_27: AAA domain 85.8 1.2E+02 0.0027 39.2 54.9 60 591-650 811-870 (1111)
122 PF10168 Nup88: Nuclear pore c 85.5 96 0.0021 38.8 21.5 91 407-497 579-670 (717)
123 KOG0963 Transcription factor/C 85.3 1E+02 0.0023 38.0 39.1 200 551-760 147-357 (629)
124 PF15619 Lebercilin: Ciliary p 85.2 55 0.0012 34.7 22.8 146 590-753 14-163 (194)
125 PF09728 Taxilin: Myosin-like 84.5 76 0.0017 35.7 37.7 73 407-479 43-120 (309)
126 COG1579 Zn-ribbon protein, pos 84.5 69 0.0015 35.2 21.1 17 677-693 56-72 (239)
127 PF10168 Nup88: Nuclear pore c 84.3 95 0.0021 38.9 20.8 41 664-704 630-670 (717)
128 PTZ00121 MAEBL; Provisional 83.1 1.9E+02 0.0041 39.3 38.5 301 472-778 1099-1407(2084)
129 PF10212 TTKRSYEDQ: Predicted 83.1 98 0.0021 37.5 19.3 98 663-767 406-507 (518)
130 PLN03229 acetyl-coenzyme A car 82.7 1.1E+02 0.0023 38.7 20.0 26 398-423 513-544 (762)
131 PF05667 DUF812: Protein of un 82.4 1.3E+02 0.0029 36.9 30.5 113 640-752 414-535 (594)
132 PF12761 End3: Actin cytoskele 82.2 15 0.00032 39.2 11.2 94 586-700 94-194 (195)
133 KOG0995 Centromere-associated 81.9 1.4E+02 0.003 36.7 46.0 105 367-480 232-336 (581)
134 KOG0018 Structural maintenance 81.7 1.8E+02 0.004 38.1 34.3 58 567-628 853-912 (1141)
135 PF09789 DUF2353: Uncharacteri 80.2 1.2E+02 0.0025 34.8 20.1 107 554-675 70-177 (319)
136 KOG0982 Centrosomal protein Nu 80.1 1.4E+02 0.003 35.7 24.0 56 656-711 280-338 (502)
137 PF08614 ATG16: Autophagy prot 80.0 27 0.00059 36.2 12.2 69 677-745 113-181 (194)
138 TIGR01005 eps_transp_fam exopo 80.0 1.6E+02 0.0035 36.3 29.4 79 595-683 288-369 (754)
139 PF13870 DUF4201: Domain of un 78.8 80 0.0017 32.2 19.4 123 342-474 6-134 (177)
140 TIGR00634 recN DNA repair prot 78.7 1.6E+02 0.0034 35.5 26.5 75 342-417 154-229 (563)
141 PF09738 DUF2051: Double stran 78.5 45 0.00097 37.6 14.0 94 343-448 78-171 (302)
142 PF09789 DUF2353: Uncharacteri 77.6 1.4E+02 0.003 34.3 18.3 108 363-479 2-113 (319)
143 PRK11519 tyrosine kinase; Prov 77.2 1.2E+02 0.0025 37.6 18.2 16 568-583 272-287 (719)
144 PF15397 DUF4618: Domain of un 76.9 1.3E+02 0.0028 33.5 26.4 60 857-919 179-238 (258)
145 PRK10884 SH3 domain-containing 76.8 29 0.00062 37.1 11.4 30 627-656 100-129 (206)
146 PF04111 APG6: Autophagy prote 76.7 43 0.00093 37.6 13.3 82 341-431 42-123 (314)
147 COG1340 Uncharacterized archae 76.3 1.4E+02 0.0031 33.8 36.1 52 567-618 135-188 (294)
148 PRK09841 cryptic autophosphory 75.9 2E+02 0.0044 35.7 19.8 16 623-638 307-322 (726)
149 PF15397 DUF4618: Domain of un 75.8 1.4E+02 0.003 33.3 19.6 18 371-388 82-99 (258)
150 KOG4360 Uncharacterized coiled 75.5 69 0.0015 38.7 14.8 88 667-754 206-293 (596)
151 TIGR01000 bacteriocin_acc bact 75.1 1.7E+02 0.0037 34.1 20.4 16 748-763 292-307 (457)
152 PF06005 DUF904: Protein of un 74.7 42 0.00091 30.5 10.2 47 369-417 24-70 (72)
153 KOG2072 Translation initiation 73.4 2.8E+02 0.006 35.7 41.5 74 587-665 669-742 (988)
154 KOG0980 Actin-binding protein 73.4 2.8E+02 0.0061 35.8 32.0 26 386-411 209-234 (980)
155 PF09731 Mitofilin: Mitochondr 73.3 2.1E+02 0.0046 34.3 30.2 63 570-635 378-442 (582)
156 PRK10246 exonuclease subunit S 72.9 3E+02 0.0065 35.9 57.7 34 670-703 721-754 (1047)
157 PF07111 HCR: Alpha helical co 72.5 2.7E+02 0.0058 35.1 55.4 112 369-484 189-349 (739)
158 TIGR00634 recN DNA repair prot 72.2 2.3E+02 0.0049 34.2 25.0 46 649-694 270-315 (563)
159 PF08614 ATG16: Autophagy prot 71.6 79 0.0017 32.8 12.9 95 650-744 79-173 (194)
160 PF04156 IncA: IncA protein; 71.6 1.2E+02 0.0026 30.8 15.4 25 400-424 123-147 (191)
161 PF10186 Atg14: UV radiation r 71.1 1.5E+02 0.0032 31.6 18.7 44 678-721 61-104 (302)
162 KOG0018 Structural maintenance 71.0 3.4E+02 0.0075 35.8 35.5 97 576-684 380-476 (1141)
163 PF06548 Kinesin-related: Kine 70.5 2.4E+02 0.0053 33.9 24.1 46 709-754 435-480 (488)
164 PF10226 DUF2216: Uncharacteri 70.5 71 0.0015 34.2 12.2 65 363-427 48-135 (195)
165 KOG0978 E3 ubiquitin ligase in 70.4 3E+02 0.0064 34.8 51.8 37 376-414 275-311 (698)
166 PF09728 Taxilin: Myosin-like 70.3 1.9E+02 0.0042 32.6 41.1 50 567-616 132-181 (309)
167 PF10267 Tmemb_cc2: Predicted 70.2 78 0.0017 37.1 13.7 102 567-686 216-318 (395)
168 PF05483 SCP-1: Synaptonemal c 69.7 3.1E+02 0.0066 34.7 53.1 117 566-683 352-481 (786)
169 PF12240 Angiomotin_C: Angiomo 69.5 1.2E+02 0.0027 32.8 13.8 51 410-460 23-86 (205)
170 PF13514 AAA_27: AAA domain 69.5 3.5E+02 0.0077 35.3 62.7 40 857-896 736-775 (1111)
171 KOG4807 F-actin binding protei 69.1 2.5E+02 0.0054 33.4 26.0 178 460-643 357-581 (593)
172 KOG0243 Kinesin-like protein [ 69.1 3.7E+02 0.008 35.4 50.5 140 339-490 408-556 (1041)
173 PF04899 MbeD_MobD: MbeD/MobD 68.9 52 0.0011 30.0 9.5 63 622-691 5-67 (70)
174 KOG0249 LAR-interacting protei 68.4 3.3E+02 0.0072 34.6 24.7 60 595-665 177-236 (916)
175 PRK12704 phosphodiesterase; Pr 68.3 2.8E+02 0.006 33.6 19.7 14 881-894 313-326 (520)
176 PF10186 Atg14: UV radiation r 68.3 1.7E+02 0.0037 31.1 20.1 36 674-709 71-106 (302)
177 smart00787 Spc7 Spc7 kinetocho 68.1 2.2E+02 0.0047 32.3 21.8 137 626-762 139-286 (312)
178 TIGR03185 DNA_S_dndD DNA sulfu 67.2 3E+02 0.0066 33.7 37.4 59 646-704 392-452 (650)
179 PF00769 ERM: Ezrin/radixin/mo 67.2 2E+02 0.0042 31.5 16.1 53 435-490 33-85 (246)
180 COG2433 Uncharacterized conser 67.0 68 0.0015 39.4 12.6 22 408-429 482-503 (652)
181 KOG0978 E3 ubiquitin ligase in 67.0 3.4E+02 0.0075 34.2 52.1 105 667-778 518-622 (698)
182 COG1340 Uncharacterized archae 66.4 2.4E+02 0.0052 32.2 32.5 49 374-424 10-58 (294)
183 PRK10698 phage shock protein P 66.1 1.9E+02 0.0042 31.0 20.1 84 570-663 99-184 (222)
184 PF10473 CENP-F_leu_zip: Leuci 65.4 1.7E+02 0.0036 30.0 18.3 23 671-693 85-107 (140)
185 PF09304 Cortex-I_coil: Cortex 65.2 1.5E+02 0.0032 29.3 13.3 62 347-424 14-75 (107)
186 PF04111 APG6: Autophagy prote 65.2 83 0.0018 35.4 12.3 90 338-429 46-135 (314)
187 PF15619 Lebercilin: Ciliary p 65.1 1.9E+02 0.0042 30.7 25.1 17 434-450 85-101 (194)
188 COG4026 Uncharacterized protei 64.6 52 0.0011 36.2 10.1 63 669-745 131-193 (290)
189 COG4372 Uncharacterized protei 64.5 3E+02 0.0066 32.7 30.6 45 629-673 198-242 (499)
190 PF05911 DUF869: Plant protein 64.4 4E+02 0.0087 34.0 26.6 74 632-705 72-166 (769)
191 COG3206 GumC Uncharacterized p 63.3 2.9E+02 0.0064 32.1 24.5 70 593-662 200-274 (458)
192 KOG3990 Uncharacterized conser 63.2 75 0.0016 35.5 11.0 78 335-428 218-295 (305)
193 PF07106 TBPIP: Tat binding pr 62.8 64 0.0014 32.6 10.0 68 339-420 69-136 (169)
194 TIGR02977 phageshock_pspA phag 62.1 2.2E+02 0.0047 30.3 23.8 9 472-480 30-38 (219)
195 PRK06568 F0F1 ATP synthase sub 61.3 2E+02 0.0044 29.6 15.5 22 576-600 106-127 (154)
196 PF15066 CAGE1: Cancer-associa 60.9 3.7E+02 0.0081 32.6 25.7 87 378-464 363-462 (527)
197 COG3206 GumC Uncharacterized p 60.2 3.3E+02 0.0072 31.7 24.9 22 728-749 372-393 (458)
198 PF06156 DUF972: Protein of un 58.4 37 0.00081 32.9 7.1 43 349-391 8-50 (107)
199 COG2433 Uncharacterized conser 58.1 1.4E+02 0.003 37.0 13.0 88 403-491 418-506 (652)
200 PRK06231 F0F1 ATP synthase sub 57.2 2.6E+02 0.0057 29.6 15.4 26 572-600 146-171 (205)
201 PF04642 DUF601: Protein of un 57.1 56 0.0012 36.4 8.8 81 652-739 186-269 (311)
202 PF10481 CENP-F_N: Cenp-F N-te 55.5 3.4E+02 0.0074 30.9 14.5 29 749-780 104-132 (307)
203 PF12709 Kinetocho_Slk19: Cent 54.9 2E+02 0.0043 27.5 11.0 51 394-450 32-86 (87)
204 PF15254 CCDC14: Coiled-coil d 54.4 4.5E+02 0.0098 33.7 16.6 55 650-704 399-458 (861)
205 PRK13428 F0F1 ATP synthase sub 54.4 3.5E+02 0.0076 32.0 15.4 16 613-628 156-171 (445)
206 PF03915 AIP3: Actin interacti 54.1 4.5E+02 0.0097 31.3 17.2 69 551-650 201-269 (424)
207 PRK13169 DNA replication intia 54.1 41 0.00088 33.0 6.6 42 350-391 9-50 (110)
208 PF15254 CCDC14: Coiled-coil d 53.7 6E+02 0.013 32.7 19.9 22 853-874 834-855 (861)
209 PRK00409 recombination and DNA 52.3 5.7E+02 0.012 32.5 17.5 20 5-24 60-79 (782)
210 TIGR03319 YmdA_YtgF conserved 52.3 5E+02 0.011 31.4 26.4 9 731-739 169-177 (514)
211 KOG0249 LAR-interacting protei 52.0 6.2E+02 0.014 32.4 26.6 17 407-423 70-86 (916)
212 CHL00118 atpG ATP synthase CF0 51.8 2.7E+02 0.0058 28.1 15.3 18 520-537 71-88 (156)
213 PF07106 TBPIP: Tat binding pr 51.8 2.3E+02 0.0049 28.8 11.8 52 591-645 112-163 (169)
214 PRK00106 hypothetical protein; 51.6 5.4E+02 0.012 31.6 28.6 9 731-739 190-198 (535)
215 PRK10929 putative mechanosensi 51.6 7.3E+02 0.016 33.1 44.6 27 650-676 284-310 (1109)
216 PF06005 DUF904: Protein of un 51.6 1.9E+02 0.0042 26.4 10.5 66 407-475 4-69 (72)
217 PRK08476 F0F1 ATP synthase sub 51.5 2.6E+02 0.0056 27.9 16.2 13 592-604 122-134 (141)
218 TIGR03185 DNA_S_dndD DNA sulfu 51.4 5.5E+02 0.012 31.5 43.0 62 435-496 206-267 (650)
219 PF06785 UPF0242: Uncharacteri 51.2 1.4E+02 0.0031 34.6 11.0 22 370-391 134-155 (401)
220 KOG1853 LIS1-interacting prote 51.2 4.1E+02 0.0089 30.1 20.4 89 624-712 24-116 (333)
221 PF12711 Kinesin-relat_1: Kine 50.4 93 0.002 29.5 8.0 78 326-415 6-85 (86)
222 TIGR03752 conj_TIGR03752 integ 50.2 1.7E+02 0.0037 35.2 11.9 39 667-705 60-98 (472)
223 PF04977 DivIC: Septum formati 50.2 37 0.0008 29.5 5.2 28 364-391 25-52 (80)
224 PF04012 PspA_IM30: PspA/IM30 50.1 3.2E+02 0.007 28.5 24.4 18 469-486 26-43 (221)
225 PF02403 Seryl_tRNA_N: Seryl-t 49.7 1.2E+02 0.0025 28.5 8.7 15 446-460 68-82 (108)
226 PRK10698 phage shock protein P 49.6 3.7E+02 0.0079 29.0 20.7 29 553-581 103-131 (222)
227 COG3883 Uncharacterized protei 49.6 4.3E+02 0.0093 29.8 26.7 144 344-487 33-190 (265)
228 PF04156 IncA: IncA protein; 49.3 3E+02 0.0066 28.0 16.0 21 678-698 100-120 (191)
229 PF11180 DUF2968: Protein of u 49.1 3.8E+02 0.0081 29.0 13.7 18 630-647 87-104 (192)
230 PRK12704 phosphodiesterase; Pr 48.2 5.8E+02 0.013 30.9 26.0 9 731-739 175-183 (520)
231 PF03962 Mnd1: Mnd1 family; I 48.0 3.1E+02 0.0067 28.9 12.3 34 676-709 65-98 (188)
232 PF14197 Cep57_CLD_2: Centroso 47.6 1.6E+02 0.0035 26.6 8.8 20 440-459 42-61 (69)
233 PF12795 MscS_porin: Mechanose 47.3 3.9E+02 0.0084 28.6 28.0 151 591-743 41-206 (240)
234 PRK09841 cryptic autophosphory 47.0 6.7E+02 0.015 31.3 17.4 17 404-420 308-324 (726)
235 PRK13453 F0F1 ATP synthase sub 47.0 3.4E+02 0.0073 27.8 15.3 8 592-599 133-140 (173)
236 COG4026 Uncharacterized protei 46.8 3.2E+02 0.0068 30.5 12.3 46 653-698 136-181 (290)
237 TIGR01069 mutS2 MutS2 family p 46.7 5.9E+02 0.013 32.4 16.5 17 7-23 59-75 (771)
238 PF15188 CCDC-167: Coiled-coil 46.6 71 0.0015 30.2 6.6 67 624-698 2-68 (85)
239 PLN02678 seryl-tRNA synthetase 46.4 98 0.0021 36.7 9.3 54 406-459 32-85 (448)
240 KOG0163 Myosin class VI heavy 46.0 7.9E+02 0.017 31.9 24.6 30 568-597 972-1001(1259)
241 PF13094 CENP-Q: CENP-Q, a CEN 45.4 2.7E+02 0.0059 28.0 11.1 67 337-426 15-81 (160)
242 KOG1962 B-cell receptor-associ 45.0 2.5E+02 0.0053 30.8 11.3 12 449-460 131-142 (216)
243 KOG0804 Cytoplasmic Zn-finger 45.0 6.5E+02 0.014 30.6 16.5 39 671-709 380-418 (493)
244 KOG4593 Mitotic checkpoint pro 44.8 7.7E+02 0.017 31.4 49.1 74 341-417 100-175 (716)
245 PF10267 Tmemb_cc2: Predicted 44.6 2.3E+02 0.0051 33.3 11.8 32 729-760 258-289 (395)
246 PRK14473 F0F1 ATP synthase sub 44.2 3.5E+02 0.0076 27.2 15.3 9 592-600 123-131 (164)
247 PRK05431 seryl-tRNA synthetase 44.0 1.1E+02 0.0024 35.7 9.3 27 406-432 27-53 (425)
248 PF07058 Myosin_HC-like: Myosi 44.0 3.5E+02 0.0076 31.3 12.5 49 341-392 34-88 (351)
249 TIGR02231 conserved hypothetic 44.0 1.9E+02 0.0041 34.3 11.2 29 642-670 128-156 (525)
250 PF10146 zf-C4H2: Zinc finger- 43.0 4.9E+02 0.011 28.6 15.3 69 626-698 10-78 (230)
251 COG1382 GimC Prefoldin, chaper 42.2 3.7E+02 0.0081 27.0 12.2 79 623-705 9-109 (119)
252 PF01442 Apolipoprotein: Apoli 42.2 3.4E+02 0.0073 26.4 23.9 16 646-661 149-164 (202)
253 PRK13460 F0F1 ATP synthase sub 42.2 3.9E+02 0.0085 27.3 15.3 95 499-600 45-139 (173)
254 TIGR03321 alt_F1F0_F0_B altern 42.0 4.8E+02 0.01 28.2 15.4 12 525-536 59-70 (246)
255 PF11932 DUF3450: Protein of u 41.4 4.9E+02 0.011 28.1 13.7 63 642-704 32-94 (251)
256 KOG0933 Structural maintenance 41.1 1E+03 0.022 31.7 35.9 253 491-762 674-935 (1174)
257 PRK00409 recombination and DNA 41.0 6.6E+02 0.014 32.0 15.7 20 636-655 489-508 (782)
258 PF04859 DUF641: Plant protein 40.4 4.1E+02 0.0089 27.0 11.3 48 447-494 75-122 (131)
259 COG4372 Uncharacterized protei 40.4 7.2E+02 0.016 29.8 32.9 26 454-479 66-91 (499)
260 PF06785 UPF0242: Uncharacteri 40.3 6.8E+02 0.015 29.4 18.1 107 371-486 100-214 (401)
261 PF10212 TTKRSYEDQ: Predicted 40.0 6.4E+02 0.014 31.0 14.6 102 399-500 412-514 (518)
262 PF09731 Mitofilin: Mitochondr 39.8 7.4E+02 0.016 29.8 24.2 29 860-888 533-561 (582)
263 PF15294 Leu_zip: Leucine zipp 39.5 6.2E+02 0.013 28.8 14.9 135 368-529 130-270 (278)
264 PF15272 BBP1_C: Spindle pole 39.1 1.7E+02 0.0036 31.6 8.8 63 347-417 87-149 (196)
265 PF01486 K-box: K-box region; 38.7 2.6E+02 0.0056 26.1 9.2 44 367-417 16-59 (100)
266 KOG1003 Actin filament-coating 38.6 5.6E+02 0.012 28.0 23.8 30 674-703 110-139 (205)
267 PF05546 She9_MDM33: She9 / Md 38.5 5.6E+02 0.012 28.0 13.7 66 341-406 31-99 (207)
268 KOG0288 WD40 repeat protein Ti 38.3 6.1E+02 0.013 30.5 13.7 34 671-704 18-51 (459)
269 TIGR02209 ftsL_broad cell divi 38.3 77 0.0017 28.2 5.5 29 363-391 31-59 (85)
270 KOG0804 Cytoplasmic Zn-finger 38.0 8.2E+02 0.018 29.7 16.8 50 374-423 348-398 (493)
271 TIGR01069 mutS2 MutS2 family p 37.9 5.3E+02 0.011 32.8 14.2 22 635-656 483-504 (771)
272 PF14197 Cep57_CLD_2: Centroso 37.9 1.7E+02 0.0036 26.5 7.4 18 407-424 47-64 (69)
273 PRK00888 ftsB cell division pr 37.8 76 0.0016 30.5 5.6 25 367-391 38-62 (105)
274 COG1842 PspA Phage shock prote 37.8 5.7E+02 0.012 27.9 21.5 52 566-617 27-81 (225)
275 PRK13169 DNA replication intia 37.8 1.4E+02 0.0029 29.5 7.4 47 344-390 10-56 (110)
276 PRK00106 hypothetical protein; 37.0 8.8E+02 0.019 29.8 27.7 27 650-676 106-132 (535)
277 KOG0239 Kinesin (KAR3 subfamil 36.8 9.7E+02 0.021 30.2 18.7 67 681-747 228-294 (670)
278 PF10234 Cluap1: Clusterin-ass 36.8 6.6E+02 0.014 28.3 19.4 98 643-765 160-257 (267)
279 PRK14471 F0F1 ATP synthase sub 36.5 4.6E+02 0.01 26.4 15.3 7 527-533 64-70 (164)
280 PRK15422 septal ring assembly 36.3 3.8E+02 0.0082 25.4 9.5 62 550-611 5-76 (79)
281 PF04012 PspA_IM30: PspA/IM30 36.0 5.3E+02 0.012 27.0 27.1 83 561-643 21-107 (221)
282 PF09744 Jnk-SapK_ap_N: JNK_SA 36.0 5.2E+02 0.011 26.9 13.8 112 358-475 38-151 (158)
283 PF06156 DUF972: Protein of un 35.6 2.4E+02 0.0053 27.5 8.7 49 343-391 9-57 (107)
284 TIGR03752 conj_TIGR03752 integ 35.4 4.3E+02 0.0093 32.0 12.2 70 343-426 60-135 (472)
285 TIGR03545 conserved hypothetic 35.4 3.6E+02 0.0077 33.1 11.9 80 626-705 163-251 (555)
286 PF00435 Spectrin: Spectrin re 35.3 2.9E+02 0.0063 23.7 8.9 61 591-658 44-104 (105)
287 PF07798 DUF1640: Protein of u 34.6 5.3E+02 0.012 26.6 19.7 22 734-755 125-146 (177)
288 PF05911 DUF869: Plant protein 34.0 1.1E+03 0.025 30.2 25.3 51 854-904 621-671 (769)
289 KOG1962 B-cell receptor-associ 33.4 5.4E+02 0.012 28.3 11.6 31 731-765 181-211 (216)
290 PF14073 Cep57_CLD: Centrosome 33.4 6.3E+02 0.014 27.0 20.6 31 709-739 121-151 (178)
291 KOG3915 Transcription regulato 33.1 5.3E+02 0.011 31.4 12.2 34 733-767 550-583 (641)
292 TIGR00414 serS seryl-tRNA synt 33.0 2.2E+02 0.0048 33.3 9.4 25 467-491 77-101 (418)
293 PRK14143 heat shock protein Gr 32.9 6.1E+02 0.013 28.0 12.1 78 335-419 60-137 (238)
294 PF14992 TMCO5: TMCO5 family 32.9 2.8E+02 0.006 31.5 9.7 40 441-480 126-165 (280)
295 PF06008 Laminin_I: Laminin Do 32.8 6.7E+02 0.015 27.2 27.4 226 374-625 21-250 (264)
296 TIGR03017 EpsF chain length de 32.0 8.3E+02 0.018 28.0 28.6 41 597-637 256-299 (444)
297 KOG0946 ER-Golgi vesicle-tethe 31.6 1.3E+03 0.028 30.2 32.9 32 393-424 639-670 (970)
298 PF12329 TMF_DNA_bd: TATA elem 31.6 4E+02 0.0087 24.3 10.2 22 681-702 6-27 (74)
299 PRK13455 F0F1 ATP synthase sub 31.5 6E+02 0.013 26.2 15.3 7 593-599 143-149 (184)
300 PRK11519 tyrosine kinase; Prov 31.2 1.1E+03 0.025 29.4 19.1 9 732-740 373-381 (719)
301 PF06810 Phage_GP20: Phage min 31.2 6E+02 0.013 26.1 11.4 87 444-544 1-90 (155)
302 PF00769 ERM: Ezrin/radixin/mo 30.8 7.5E+02 0.016 27.1 17.6 17 853-869 185-201 (246)
303 TIGR02231 conserved hypothetic 29.4 5.9E+02 0.013 30.3 12.3 16 748-763 153-168 (525)
304 PF08826 DMPK_coil: DMPK coile 29.2 3.3E+02 0.007 24.4 7.6 23 406-428 38-60 (61)
305 PLN02320 seryl-tRNA synthetase 29.1 2.4E+02 0.0052 34.2 9.0 21 339-359 64-84 (502)
306 KOG3119 Basic region leucine z 28.7 2.2E+02 0.0048 31.5 8.1 21 132-152 38-58 (269)
307 PF13851 GAS: Growth-arrest sp 28.4 7.4E+02 0.016 26.4 22.0 53 703-755 88-140 (201)
308 PF08172 CASP_C: CASP C termin 28.4 5.3E+02 0.011 28.5 10.8 23 369-391 12-34 (248)
309 PF08838 DUF1811: Protein of u 28.3 1.3E+02 0.0029 29.4 5.5 37 567-609 11-47 (102)
310 PF11932 DUF3450: Protein of u 28.3 7.8E+02 0.017 26.5 18.7 79 621-699 25-103 (251)
311 PF15290 Syntaphilin: Golgi-lo 28.0 3.2E+02 0.007 31.1 9.1 62 647-711 70-141 (305)
312 PF03915 AIP3: Actin interacti 27.8 1.1E+03 0.024 28.2 14.8 126 341-474 150-275 (424)
313 PF05529 Bap31: B-cell recepto 27.4 4.3E+02 0.0093 27.3 9.5 23 465-487 160-182 (192)
314 PF10498 IFT57: Intra-flagella 27.4 1E+03 0.023 27.7 17.6 94 628-721 221-314 (359)
315 PF15290 Syntaphilin: Golgi-lo 27.4 4.8E+02 0.01 29.9 10.2 69 553-637 72-141 (305)
316 COG3074 Uncharacterized protei 26.6 5.4E+02 0.012 24.1 9.1 52 557-612 26-77 (79)
317 KOG0964 Structural maintenance 26.5 1.7E+03 0.037 29.8 39.1 101 563-682 390-490 (1200)
318 PF10883 DUF2681: Protein of u 26.3 1.1E+02 0.0024 29.0 4.6 30 364-393 24-53 (87)
319 PF04977 DivIC: Septum formati 26.2 1.6E+02 0.0034 25.6 5.3 61 857-918 17-77 (80)
320 PF06657 Cep57_MT_bd: Centroso 26.1 3.6E+02 0.0077 25.0 7.7 53 853-905 13-77 (79)
321 PF12761 End3: Actin cytoskele 26.0 7.3E+02 0.016 26.9 11.0 48 337-384 91-142 (195)
322 PRK02119 hypothetical protein; 26.0 2.8E+02 0.0062 25.2 6.9 44 344-387 4-47 (73)
323 PF10018 Med4: Vitamin-D-recep 25.6 4.7E+02 0.01 27.3 9.4 59 437-499 4-62 (188)
324 KOG0239 Kinesin (KAR3 subfamil 24.9 1.5E+03 0.032 28.7 17.6 80 399-479 233-313 (670)
325 PF05262 Borrelia_P83: Borreli 24.8 1.3E+03 0.029 28.1 17.9 25 572-596 305-329 (489)
326 PRK13461 F0F1 ATP synthase sub 24.7 7.2E+02 0.016 24.9 15.4 8 592-599 120-127 (159)
327 PF09763 Sec3_C: Exocyst compl 24.6 1.2E+03 0.027 28.8 14.2 72 622-693 7-78 (701)
328 TIGR02449 conserved hypothetic 24.5 5.4E+02 0.012 23.4 8.7 44 575-618 15-58 (65)
329 PF08657 DASH_Spc34: DASH comp 24.5 3.2E+02 0.0069 30.4 8.3 58 618-705 154-212 (259)
330 PRK15422 septal ring assembly 24.5 6.1E+02 0.013 24.0 10.4 23 727-749 51-73 (79)
331 PF02044 Bombesin: Bombesin-li 24.5 28 0.0006 23.1 0.2 12 59-70 3-14 (14)
332 PF10226 DUF2216: Uncharacteri 24.4 9.4E+02 0.02 26.2 15.4 103 650-752 21-131 (195)
333 PF09738 DUF2051: Double stran 24.4 1.1E+03 0.024 27.0 14.0 52 673-724 84-135 (302)
334 PF00846 Hanta_nucleocap: Hant 24.3 6.7E+02 0.015 29.9 11.0 66 341-424 1-66 (428)
335 COG3883 Uncharacterized protei 24.2 1.1E+03 0.023 26.8 27.1 37 580-616 196-232 (265)
336 smart00502 BBC B-Box C-termina 24.2 5.5E+02 0.012 23.4 13.4 45 561-605 12-56 (127)
337 TIGR03319 YmdA_YtgF conserved 24.1 1.4E+03 0.029 27.9 24.3 28 649-676 84-111 (514)
338 PF12777 MT: Microtubule-bindi 23.8 1.1E+03 0.024 26.8 13.4 46 857-902 221-266 (344)
339 KOG4552 Vitamin-D-receptor int 23.8 1E+03 0.022 26.4 14.7 88 400-491 8-99 (272)
340 PF09486 HrpB7: Bacterial type 23.4 8.7E+02 0.019 25.4 18.2 123 565-705 17-139 (158)
341 PF08581 Tup_N: Tup N-terminal 23.3 6.2E+02 0.013 23.7 11.7 40 718-757 35-74 (79)
342 PF05837 CENP-H: Centromere pr 23.3 6.8E+02 0.015 24.1 9.8 68 641-709 6-73 (106)
343 PF05600 DUF773: Protein of un 23.1 1.4E+03 0.031 27.8 14.8 60 437-496 438-497 (507)
344 PRK10476 multidrug resistance 23.1 1.1E+03 0.023 26.4 18.0 27 713-739 150-176 (346)
345 PF07889 DUF1664: Protein of u 23.1 7.9E+02 0.017 24.8 12.3 86 367-488 40-125 (126)
346 PRK06975 bifunctional uroporph 23.0 6.9E+02 0.015 31.1 11.6 55 596-661 379-436 (656)
347 COG0497 RecN ATPase involved i 22.9 1.5E+03 0.033 28.1 23.5 47 648-694 265-311 (557)
348 PF14282 FlxA: FlxA-like prote 22.7 4.3E+02 0.0093 25.4 7.8 27 672-698 50-76 (106)
349 PF05837 CENP-H: Centromere pr 22.7 7E+02 0.015 24.0 10.7 75 343-427 4-78 (106)
350 KOG0163 Myosin class VI heavy 22.5 1.8E+03 0.04 28.9 18.5 22 631-652 893-914 (1259)
351 PRK13729 conjugal transfer pil 22.4 3.7E+02 0.008 32.6 8.8 61 668-742 64-124 (475)
352 PRK09343 prefoldin subunit bet 22.2 7.6E+02 0.016 24.3 12.2 92 614-709 1-114 (121)
353 TIGR02449 conserved hypothetic 22.2 6E+02 0.013 23.1 9.0 27 672-698 6-32 (65)
354 PF09403 FadA: Adhesion protei 22.1 8.3E+02 0.018 24.7 11.8 89 677-766 24-112 (126)
355 PRK10636 putative ABC transpor 22.0 4.9E+02 0.011 31.9 10.1 28 621-648 599-626 (638)
356 cd07667 BAR_SNX30 The Bin/Amph 22.0 1.1E+03 0.024 26.2 22.4 61 634-694 89-150 (240)
357 PF14362 DUF4407: Domain of un 22.0 1.1E+03 0.023 26.0 17.0 46 619-664 181-230 (301)
358 PLN03188 kinesin-12 family pro 21.2 2.2E+03 0.049 29.4 37.7 153 571-753 1094-1249(1320)
359 PF02841 GBP_C: Guanylate-bind 21.0 1.2E+03 0.025 26.0 14.5 120 344-479 178-297 (297)
360 KOG0962 DNA repair protein RAD 21.0 2.3E+03 0.049 29.4 50.3 90 655-746 988-1079(1294)
361 PF14712 Snapin_Pallidin: Snap 20.9 6.4E+02 0.014 22.9 10.5 65 550-614 15-90 (92)
362 PRK10869 recombination and rep 20.9 1.6E+03 0.034 27.5 28.4 70 345-415 153-223 (553)
363 PF04582 Reo_sigmaC: Reovirus 20.8 1.8E+02 0.0039 33.5 5.7 28 594-621 27-54 (326)
364 PF04568 IATP: Mitochondrial A 20.6 4.6E+02 0.01 25.5 7.6 28 736-763 72-99 (100)
365 PF04728 LPP: Lipoprotein leuc 20.5 5.9E+02 0.013 22.7 7.4 44 681-731 4-47 (56)
366 TIGR02977 phageshock_pspA phag 20.5 1E+03 0.023 25.3 24.5 60 562-621 23-85 (219)
367 PF15030 DUF4527: Protein of u 20.3 1.1E+03 0.024 26.7 11.1 68 623-701 19-86 (277)
368 PF00430 ATP-synt_B: ATP synth 20.3 7.4E+02 0.016 23.4 11.1 11 526-536 54-64 (132)
369 COG4985 ABC-type phosphate tra 20.3 1.1E+03 0.025 26.5 11.2 46 645-700 161-206 (289)
370 PF04102 SlyX: SlyX; InterPro 20.1 5.2E+02 0.011 23.1 7.3 17 650-666 2-18 (69)
No 1
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=100.00 E-value=3.9e-116 Score=979.79 Aligned_cols=851 Identities=50% Similarity=0.632 Sum_probs=677.9
Q ss_pred CCccCC-CCCCCCCCchhhhhhhchHhHHHHHHhhhhhcCccccccccCCCCCCCCCCCccc-----------hhhhccc
Q 002440 1 MAWFSG-KVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWP-----------VMSFMGH 68 (921)
Q Consensus 1 ma~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 68 (921)
|+||+| |++||+|+|+.|++|++..++++|.++|+.++||.++++.+..+. ++.+|| ||+||||
T Consensus 1 MsWF~~Ak~sl~~~lDiq~~~~~~~~~~k~~p~~~~~~~Gg~d~s~~~~~~n----a~~~~Pp~a~tka~~~Pv~~~~~~ 76 (961)
T KOG4673|consen 1 MSWFSGAKVSLGGFLDIQGAVNKFQESVKNIPKNFDNALGGDDKSDSAAEDN----ASSMWPPAADTKALFDPVMSFMGN 76 (961)
T ss_pred CchhhhhhhhhcccccccccchhhhhcccCCcccCCcccCCCCccccccccc----CCCCCCCCCCcccccccHHHhccc
Confidence 999999 999999999999999999999999999999999999999988876 667787 9999999
Q ss_pred CCCCCCCC-cCCCCCCCCCCCCCcccccccccccccccccccchhhhccCC---CCCCcCC-CCCcccccccchhccCCC
Q 002440 69 KSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKAS---PKTEKDD-EHPDTAENLDFVVSEHGK 143 (921)
Q Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (921)
.+.++|++ +.+--...|-+-+-|++..+ ++|-...+ ..++.-++ +..+-|+ ..|.+.+ .|+.++..
T Consensus 77 t~f~~P~~~~~~vvt~pPs~~~~peee~~-----S~~~g~~q-s~~~ds~~~~s~~~~a~~~~sP~~~e---~~~~vP~v 147 (961)
T KOG4673|consen 77 TSFEKPDTLEDSVVTEPPSQIEQPEEEAG-----SVKLGTEQ-SVSVDSNKETSVRREADQADSPEVTE---TVVLVPKV 147 (961)
T ss_pred ccccCcccccccccccCCCcccCchhhcc-----cchhccch-hhhhhhhhhhcccccccCCCCCCCcc---ccCcCccc
Confidence 99999733 22222233333333332211 22222221 11111111 1112222 1222222 25555555
Q ss_pred CCCCCCcccCCCCchhhhccCCCCccchhhhhhhccCCCCcccccccccCCCC-----------ccccccccccccccCc
Q 002440 144 VDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPF-----------EADQIEISSSLRDESD 212 (921)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 212 (921)
.+..|+++.-..++-..+..+++ ++.++-...-..++.+..-+.|. +-+.-|+++..+.+-.
T Consensus 148 ~~~~Se~~lE~is~ts~qt~~~~-------~~~~~l~P~~~ps~p~S~~s~~~~~tSd~ee~d~Ed~~~e~~~~~r~~t~ 220 (961)
T KOG4673|consen 148 DEPQSEILLEEISETSLQTPESS-------GYKTSLQPNEKPSMPASQDSQPEQPTSDAEESDPEDSEAEEVTVERKDTV 220 (961)
T ss_pred chhhhHHHHHHHHhhhccCcccc-------ccccccCCCCCCCCCccccccCCCCcchhhhcCcccchhhhhhhhhcccc
Confidence 55555554222222222211111 01111000000001111111111 1123344554444444
Q ss_pred ccccccccccccccccchhHHhhhhhhhhccCCCcccccchhhhhccC---CCCCCCccchhhhhhhhhccccccCCCCc
Q 002440 213 NVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVG---TESSDSQSVSAEETERVRELLSSSASSPK 289 (921)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (921)
...+.....++.++.++....++.+.....+.|+..||..+|+.+..| +.+.++|+..++ ..+.+.+++|.+||
T Consensus 221 hs~~s~~~mk~~~~~~~~~a~~~~n~~~d~~~Ss~~FE~i~~~~~~~gkSr~~s~v~~~d~~~---~s~~s~~eiiin~n 297 (961)
T KOG4673|consen 221 HSPVSDGQMKITYMDETTNAQEILNENLDGRTSSKNFEVIPDINHVNGKSRIESPVAHPDLIF---ESDGSPYEIIINKN 297 (961)
T ss_pred cCccchhhHHHHHHHhhhhhhhhhccccccccccchhhhchhhhhccCCCCCCCCCCChhhhc---cCCCCcceeecCCC
Confidence 444555667788999999999999999999999999999999999884 455555555444 44566778888887
Q ss_pred ccccc------ccccCCCCCCCccchhhhhhhccccCccchhhhccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 290 AVSET------VCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAAR 363 (921)
Q Consensus 290 ~~s~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ds~~elekL~~ei~~le~~l~~a~r 363 (921)
+.|++ ++++|++.-+......+... +++-++..|.+++.+-+++|+|++++|++|+.+|+ +|
T Consensus 298 g~SsT~e~ser~s~~v~~el~~~~~~~e~~e----------s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~le--aR 365 (961)
T KOG4673|consen 298 GRSSTDEISERISDFVSRELDSRLDTSELNE----------SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALE--AR 365 (961)
T ss_pred CCccccccccccchHHHHHhccchhhHHhhh----------ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 76654 56667766666665555443 56667788888886669999999999999999999 56
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHH----
Q 002440 364 QAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN--KKSDAA---- 437 (921)
Q Consensus 364 q~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~a--k~s~aa---- 437 (921)
++|.++.++++++-.+.++....+.++.+++++++..|+++|+|||++||+|||++|||||+||++.+ +...++
T Consensus 366 eaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~ 445 (961)
T KOG4673|consen 366 EAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK 445 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 77777788888887888888888999999999999999999999999999999999999999999988 333333
Q ss_pred HHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhHHhHHHHHHhhHHHHHHHHHHH
Q 002440 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG---LVTKLQVEENKVESIKRDKTATEKLLQETI 514 (921)
Q Consensus 438 a~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~---Lk~KlE~e~~~le~~kr~~~a~EK~lqE~l 514 (921)
+.|+||||||++||+||+||||+|+++++||||||+++++.+.-... +-.+|+.+..++..+.+.++++||.+++.+
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998854444 446889999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 515 EKHQVELGEQKDYYTN--ALAAAKEAEELAEARANNEARAEL--ESRLR--EAGERETMLVQALEELRQTLSRTEQQAVF 588 (921)
Q Consensus 515 Ek~qkEL~a~k~~~~~--~L~aAKe~a~~AEarA~~Ea~~~L--e~~lk--EaeErEe~L~~qI~DLRekLeRaee~Aa~ 588 (921)
.+++.++..++.+|.+ .+.++.+...+|+.+++.+++-.| +.+++ ++++++.+|.+||.|||.+|.++++.+++
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 566677777778888888887655 34555 78888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE 668 (921)
Q Consensus 589 rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eRE 668 (921)
||++||+||.+|++|||++|.||+++++.||.+|||||||||+||.+++.++.+|+..|++|.+||.+.+..++.++.+|
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e 685 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE 685 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 002440 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQE 748 (921)
Q Consensus 669 re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~ 748 (921)
+..++.+..++-.+.....|++++|+|+.+|++.|+.+++|+.+.+++|.++++++..+++|..+|+++++.++.+|+++
T Consensus 686 qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 686 QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCcccccccCcCCCCccccccccCcCCcchhhhhhhhccccc
Q 002440 749 LQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDSS 828 (921)
Q Consensus 749 l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~~~a~~eqt~~~~~~s~~~~~~~~~~lS~ssSi~s~~~s~flQ~s~dss 828 (921)
++..+-+-++.+..++.+++-++++||+-. . .+++|.+|..+|+++.+.+ +.+.+|...
T Consensus 766 lq~~ll~ve~~~k~~e~~~~~~~~lers~a-------------------~-i~Ssp~~s~~~SgSnee~a-g~~~~f~~d 824 (961)
T KOG4673|consen 766 LQEVLLHVELIQKDLEREKASRLDLERSTA-------------------R-INSSPVSSQLPSGSNEEIA-GQNSAFEND 824 (961)
T ss_pred hhHHHHHHHHHHHHhhhCHHHHhhcccccC-------------------c-cCCCCchhhCCCCchHhHh-cccchhhcc
Confidence 999988888888888888877667766521 1 2466778888889998877 888999987
Q ss_pred ccccccCCCC--CCCCchhhhccCCh-----HHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHh
Q 002440 829 DSLSDRKNTV--EPTMSPYYVKSMTP-----SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQV---HVQV 898 (921)
Q Consensus 829 d~~~~~~~~g--~~s~S~y~~~s~s~-----s~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~---Ee~v 898 (921)
|-..+| +|| +.+|+|||+.++++ +.|++-|+||||||+||||+|++||.+|++|++|||+||++| ++++
T Consensus 825 d~s~~~-s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~ 903 (961)
T KOG4673|consen 825 DFSEKR-SMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKA 903 (961)
T ss_pred chhhhh-cCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777 999 44777988777644 589999999999999999999999999999999999999999 6789
Q ss_pred hhhhhhhhhh
Q 002440 899 VFILRISIEL 908 (921)
Q Consensus 899 ~~i~~l~~~~ 908 (921)
+.||+|+-+|
T Consensus 904 ~~~p~~~~~l 913 (961)
T KOG4673|consen 904 DRVPGIKAEL 913 (961)
T ss_pred HhhHHHHHHH
Confidence 9999999876
No 2
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=99.54 E-value=2.2e-14 Score=126.44 Aligned_cols=69 Identities=45% Similarity=0.572 Sum_probs=62.1
Q ss_pred HHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhh
Q 002440 435 DAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDK 503 (921)
Q Consensus 435 ~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~ 503 (921)
++..+|+|||++|++||+||++||+++++|+++|||||++++++++.+..|+.+++.....+..+..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467799999999999999999999999999999999999999999999999998888777776665543
No 3
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=99.19 E-value=3.6e-05 Score=90.30 Aligned_cols=329 Identities=24% Similarity=0.254 Sum_probs=178.7
Q ss_pred HhhhhHHHHHHHHHHhhHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh---HHHHhHHhHHHHHHhhHHHHHHH---
Q 002440 439 LLKEKDEIINQVMAEGEELSKKQAA--QEAQIRKLRAQIRELEEEKKGLVT---KLQVEENKVESIKRDKTATEKLL--- 510 (921)
Q Consensus 439 ~LaEKDEqIa~LMEEGEKLSKkQlq--~e~iIKKLRakikE~Eee~~~Lk~---KlE~e~~~le~~kr~~~a~EK~l--- 510 (921)
+|++=.-+..++..|--.|=+.+-- -+-.-+=+|-.++|-++.+..|.. ||.+..-+..++-++..+..|..
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl 489 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETL 489 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4544444555555555444443221 111111223356666777777763 77776666666555555544432
Q ss_pred ----HHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002440 511 ----QETIEKHQVELGEQKDYYTN------ALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTL- 579 (921)
Q Consensus 511 ----qE~lEk~qkEL~a~k~~~~~------~L~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekL- 579 (921)
.+.+.+++.++..++..+.. .+..+-.. ..|+..-..+-...+.....+++.+-..+++....++.-|
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k-~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq 568 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEK-HQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ 568 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 24445556665555444331 11111000 0111111111112222222233333333444444444422
Q ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcCCccchHHHHHHHHHHHHHHH----HHHHHHHH---
Q 002440 580 --SRTE-QQAVFREDMLRRDIEDLQRRYQASER---RCEELVTQVPESTRPLLRQIEAIQETTAR----RAEAWAAV--- 646 (921)
Q Consensus 580 --eRae-e~Aa~rEdeLR~EIsdLeqRLEeAEa---RaEELSssv~eATrPLLRQIEtLQaq~a~----asenWe~i--- 646 (921)
.|++ ..++.++.+|-..+.+|.+.|+-+|. |-|..-- --|+.||--|-. ..+.-+.+
T Consensus 569 k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R----------~Ei~~LqrRlqaaE~R~eel~q~v~~T 638 (961)
T KOG4673|consen 569 KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR----------GEIEDLQRRLQAAERRCEELIQQVPET 638 (961)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3333 45666777777777777777765442 2222111 124444433332 22222222
Q ss_pred HHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHHh
Q 002440 647 ERSLNLRLQEAEAK---AAASEER-ERSVNERLS--QTLSRINVLEAQISCLRAEQTQL-----TKSLEK--ERQRAAEN 713 (921)
Q Consensus 647 E~sL~~RL~eaEk~---~~eA~eR-Ere~~Erl~--~lksri~~LEsQls~lR~E~~qL-----~~qLE~--Er~r~~~~ 713 (921)
=+-|+.+|.+++.- +..+-+| |+.++++|. ....|+++++.|... +|+-.+ ...++. -|+.....
T Consensus 639 TrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgek--qElL~~~~~l~s~~~q~sllraE~~~l 716 (961)
T KOG4673|consen 639 TRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEK--QELLSLNFSLPSSPIQLSLLRAEQGQL 716 (961)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhH--HHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 23366777777664 4445556 899999999 788899998886543 222111 111111 12222233
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhh
Q 002440 714 RQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAES 781 (921)
Q Consensus 714 rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~~ 781 (921)
+.-++.++-.+...+..+..+++++.+++++|.+...++++.+..+.++|.+..+ ++++++++..+.
T Consensus 717 ~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll-~ve~~~k~~e~~ 783 (961)
T KOG4673|consen 717 SKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLL-HVELIQKDLERE 783 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHhhhC
Confidence 3445555666677788899999999999999999999999999999999999999 589999987653
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.16 E-value=4.2e-05 Score=92.22 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002440 463 AQEAQIRKLRAQIRELEEEKKGL 485 (921)
Q Consensus 463 q~e~iIKKLRakikE~Eee~~~L 485 (921)
..+..|+.++..+..+++++..+
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.02 E-value=0.00023 Score=92.34 Aligned_cols=46 Identities=35% Similarity=0.463 Sum_probs=22.7
Q ss_pred HhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG 484 (921)
Q Consensus 439 ~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~ 484 (921)
.|+-|+..+..|....+.++.--.++...|+.|.++|+++.+++..
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444455555444444444433
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=0.0022 Score=81.71 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=39.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhhh
Q 002440 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKM--TAQVHVQVVFILRISIEL 908 (921)
Q Consensus 853 s~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkL--T~q~Ee~v~~i~~l~~~~ 908 (921)
+.+++.+.....+|..+..+|..+...+..|...|-.+ ..++.+....|-.|..++
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777778888888888888777777 555566666666655544
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0014 Score=79.36 Aligned_cols=125 Identities=25% Similarity=0.286 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---hHHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPEST---RPLLRQIEAIQETTARRAEAW 643 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eAT---rPLLRQIEtLQaq~a~asenW 643 (921)
.|..++.+++..+...+.. ...+.++..|+.++..++...+.....+.+.. ..|-.+|+.|...+...-..-
T Consensus 486 ~le~~l~~~~~~~e~l~~~-----~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~ 560 (880)
T PRK02224 486 DLEEEVEEVEERLERAEDL-----VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433332 12244555566665555555444444333332 366777777766664444433
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002440 644 AAVERSLNL---RLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (921)
Q Consensus 644 e~iE~sL~~---RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~ 697 (921)
..++..+.. ++.++..++......=..+. .+..+..+|..++..+..++.+..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~ 616 (880)
T PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKRE 616 (880)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 44444444444333222222 233344444444444444443333
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.68 E-value=0.003 Score=76.34 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002440 463 AQEAQIRKLRAQIRELEEEKKGL 485 (921)
Q Consensus 463 q~e~iIKKLRakikE~Eee~~~L 485 (921)
.+...+..|+..+..++.++..+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.64 E-value=0.0014 Score=70.36 Aligned_cols=163 Identities=25% Similarity=0.339 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH-HHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA-RRAEAWAAV 646 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a-~asenWe~i 646 (921)
|..+|..|++.|...... ...||.+|..++. ....-+... .....|=.-|..+..+|. ....+|+.+
T Consensus 122 le~~i~~L~eEl~fl~~~-------heeEi~~L~~~~~--~~~~~e~~~---~~~~dL~~~L~eiR~~ye~~~~~~~~e~ 189 (312)
T PF00038_consen 122 LENQIQSLKEELEFLKQN-------HEEEIEELREQIQ--SSVTVEVDQ---FRSSDLSAALREIRAQYEEIAQKNREEL 189 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-------hhhhhhhhhhccc--cccceeecc---cccccchhhhhhHHHHHHHHHhhhhhhh
Confidence 444455555555443333 3567777777665 111112211 223457777788899987 567999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002440 647 ERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADT 726 (921)
Q Consensus 647 E~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~ 726 (921)
|.....++.++..........=..+.+.+..++..|..|..++..++..+..|...+..-..+.. .+...
T Consensus 190 e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----------~~~~~ 259 (312)
T PF00038_consen 190 EEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----------EEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred hhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH----------HHHHH
Confidence 99999999999999888887778888899999999999999999999988887777664333332 22333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 727 QEGRANQLEEEIKELRRKHKQELQEA 752 (921)
Q Consensus 727 qE~r~~qLEeel~~l~~k~~q~l~e~ 752 (921)
....+..++.+|..++..+.+.+.+.
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHH
Confidence 44556677777777777766655444
No 10
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.58 E-value=0.0082 Score=76.13 Aligned_cols=122 Identities=28% Similarity=0.358 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002440 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLA 719 (921)
Q Consensus 640 senWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~a 719 (921)
...|..-|..|..++..++.++..+..+...+...+.....++..+...++..+++..+....++.-+......+.++..
T Consensus 595 ~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 595 VPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34588888899999999999998888888888888888888888888888877777777666665544444433333333
Q ss_pred HH--------HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 720 AK--------EEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQ 761 (921)
Q Consensus 720 ak--------ee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~ 761 (921)
++ ......+..+.++..++..+...++..+.+++.++..-.+
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~ 724 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQ 724 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3334445556666666666666666666666544433333
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.011 Score=75.62 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHH---HHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRA---EAW 643 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~as---enW 643 (921)
-|...+..+...+.+........+..++.++..+...+.....=+.++..-+. .-.-+||+.++..+.... +.-
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~---~~~~~qL~~~e~el~~~~~~ie~l 989 (1311)
T TIGR00606 913 PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ---DGKDDYLKQKETELNTVNAQLEEC 989 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666666666666666666665555555543211 113345555555544333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHH
Q 002440 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQT--LSRINVLEAQISCLRAEQTQLT-KSLEKERQRAAENRQEYLAA 720 (921)
Q Consensus 644 e~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~l--ksri~~LEsQls~lR~E~~qL~-~qLE~Er~r~~~~rqe~~aa 720 (921)
+.-=..+...+..+.+.+......++.+.+.+..+ ...+..++.++..|..+...+. ..+..++.++. .++...
T Consensus 990 e~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~---~~~~~l 1066 (1311)
T TIGR00606 990 EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLE---ENIDLI 1066 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---HHHHHH
Confidence 44445667788889999999999999999877777 7777888888887776666542 44445554443 334444
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHH
Q 002440 721 KEEADTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 721 kee~~~qE~r~~qLEeel~~l~~k~ 745 (921)
....+...|.+++|+.+|..++..+
T Consensus 1067 ~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1067 KRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666677777776666665
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=98.54 E-value=1.8e-07 Score=89.92 Aligned_cols=57 Identities=37% Similarity=0.442 Sum_probs=52.3
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhhhh
Q 002440 852 PSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQV---HVQVVFILRISIEL 908 (921)
Q Consensus 852 ~s~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~---Ee~v~~i~~l~~~~ 908 (921)
.+.|+|+||++||||++|+|+|.+|+.+|+.|++|||+||.+| ...++.+|.|.-++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el 77 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQEL 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999 55578888888765
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.52 E-value=0.015 Score=76.40 Aligned_cols=78 Identities=31% Similarity=0.356 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (921)
Q Consensus 407 eRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk 486 (921)
+.|..+...+..+...+.-+..+ +..+...|+.=.+.|..+-+-..||+|.-..++..|+.|-..+...++...+|+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~E---k~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~ 1012 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELE---KNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLN 1012 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333322222 122333444444444445555555555555566666666666666666555554
Q ss_pred h
Q 002440 487 T 487 (921)
Q Consensus 487 ~ 487 (921)
.
T Consensus 1013 k 1013 (1930)
T KOG0161|consen 1013 K 1013 (1930)
T ss_pred H
Confidence 3
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.0092 Score=72.19 Aligned_cols=11 Identities=0% Similarity=-0.248 Sum_probs=4.8
Q ss_pred hhhheeeeeec
Q 002440 909 LYISIHIFMFR 919 (921)
Q Consensus 909 ~~~~~~~~~~~ 919 (921)
+.++-|+++.+
T Consensus 857 ~~~~d~~~~l~ 867 (880)
T PRK03918 857 KDAADYVIRVS 867 (880)
T ss_pred HHhCCeEEEEE
Confidence 34444444443
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.22 E-value=0.039 Score=67.98 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=23.5
Q ss_pred hhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002440 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISI 906 (921)
Q Consensus 858 qLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~~ 906 (921)
.|.....+|..++.++..++.....+..++..+..+.......++.+.-
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 723 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444555555555444444444444443
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.18 E-value=0.058 Score=68.42 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhh-hcChHHHHHHHHH-HHHHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR-KTNDAELETLREE-YHQRVATLERKVYA 418 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~-ks~eael~~LkeE-yteRIdALErKLQ~ 418 (921)
.+-+.+..++....+..|..+..-+..+.+-+..|..+.+.|+.+.+.+.+ ..-..++..+... +.-++..+..++..
T Consensus 164 aaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~ 243 (1163)
T COG1196 164 AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEE 243 (1163)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666555555555566666555555555544433 1222222222221 11233333333333
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002440 419 LTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (921)
Q Consensus 419 L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~ 487 (921)
+..+...++..+ .+....+.+....|..|-.+-+.|.............++.++.+++.++..++.
T Consensus 244 ~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 309 (1163)
T COG1196 244 LEEELSRLEEEL---EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309 (1163)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222211 233345555555555555555555555444444444444455555555544443
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.14 E-value=0.057 Score=66.59 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=12.0
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 367 AKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 367 sks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
...+.+.+|......|+.++..++.
T Consensus 181 ~~~~~l~el~~~~~~L~~q~~~l~~ 205 (1164)
T TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRR 205 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544443
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.10 E-value=0.075 Score=66.48 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=62.8
Q ss_pred hhccccccc-cCCcccHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhHHHHHHHHhhHHHHH
Q 002440 326 QRLSSEANV-SVSADSVCELEKLKREMKMMETALQGA---------------------ARQAQAKADEIAKMMNENEHLK 383 (921)
Q Consensus 326 ~~~~~~~~~-~~s~ds~~elekL~~ei~~le~~l~~a---------------------~rq~qsks~eiA~L~e~NdqLk 383 (921)
..|..+.+. +....|..+|++|-..+.+|..+|++. .+.|.++.++.-.|....-+|+
T Consensus 1208 ~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~ 1287 (1758)
T KOG0994|consen 1208 EKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELR 1287 (1758)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444443 233345556666666666666666654 2455666666666777777777
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 384 AVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRR 428 (921)
Q Consensus 384 ~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRr 428 (921)
..++.++...-...++.++.-| ++...+++.+-..+.+.+++..
T Consensus 1288 e~~~~ik~sdi~GA~~~~r~a~-~~s~ea~~r~~~s~~~l~s~~~ 1331 (1758)
T KOG0994|consen 1288 EQLEKIKESDILGAFNSTRHAY-EQSAEAERRVDASSRELASLVD 1331 (1758)
T ss_pred HHHHHhhccCchhHHHHHHHHH-HHHHHHHHhhhhhhhcccchhh
Confidence 7788777766556666555544 5566667777777777665433
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.08 E-value=0.07 Score=65.40 Aligned_cols=273 Identities=20% Similarity=0.265 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQASERRCEELVTQVPESTRP---LLRQIEAIQETTARRAEAWAAVERSLNLRLQE---AEAKAAASEERE 668 (921)
Q Consensus 595 ~EIsdLeqRLEeAEaRaEELSssv~eATrP---LLRQIEtLQaq~a~asenWe~iE~sL~~RL~e---aEk~~~eA~eRE 668 (921)
..|..|++=++.++....-|-+.+.-++.| ++.|+|.-.......-.-...++--|..+-.+ +++++..+..-.
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777777777777765555554 34556655555444333344555555444322 333444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH--
Q 002440 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK-- 746 (921)
Q Consensus 669 re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~-- 746 (921)
.++. .+|..+..++....+....|+..++..|.++..-..-+................+..+|..+++.|.
T Consensus 318 ~d~r-------~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 318 SDMR-------QHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4455555555555555555555555544444433333344443344444445555555555555443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCcccccccCcCCCCccccccccCcCCcchhh----hhh
Q 002440 747 -QELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEES----HFL 821 (921)
Q Consensus 747 -q~l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~~~a~~eqt~~~~~~s~~~~~~~~~~lS~ssSi~s~~~s----~fl 821 (921)
..+.-+.+.++.|+..+ .+|...++.++..... .| + +.+ .. ...+.++.+ .-+
T Consensus 391 e~ki~~Lq~kie~Lee~l-~ekd~ql~~~k~Rl~~-~~--d-~~~------------~~-----~~~~~lEea~~eker~ 448 (775)
T PF10174_consen 391 ERKINVLQKKIENLEEQL-REKDRQLDEEKERLSS-QA--D-SSN------------ED-----EALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc-cc--c-ccc------------hH-----HHHHHHHHHHHHHHHH
Confidence 35666666677777665 3444344444443211 00 0 000 00 001122221 111
Q ss_pred hhcccccccccccCCCCCCCCchhhhccCChHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002440 822 QASLDSSDSLSDRKNTVEPTMSPYYVKSMTPSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFI 901 (921)
Q Consensus 822 Q~s~dssd~~~~~~~~g~~s~S~y~~~s~s~s~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i 901 (921)
+..++-. ..+ ...|..- ....|+..++...++|..||.+|...+..=..+-++.++|+..-+.+-.+|
T Consensus 449 ~e~l~e~---r~~-------~e~e~~E--ele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i 516 (775)
T PF10174_consen 449 QERLEEQ---RER-------AEKERQE--ELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEI 516 (775)
T ss_pred HHHHHHH---HHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHH
Confidence 1111110 000 0101100 124788999999999999999999888888888889999988888777777
Q ss_pred hhhhhhh
Q 002440 902 LRISIEL 908 (921)
Q Consensus 902 ~~l~~~~ 908 (921)
-.|.|.+
T Consensus 517 ~~l~I~l 523 (775)
T PF10174_consen 517 ERLEIEL 523 (775)
T ss_pred HHHHHHH
Confidence 7777765
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.02 E-value=0.15 Score=66.92 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002440 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIEL 908 (921)
Q Consensus 854 ~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~~~~ 908 (921)
.|+--++...+-|+.|+.+|..++..-.-|-.+|..|+.++...+.++-+|+-+.
T Consensus 1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~ 1287 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEN 1287 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778888888888888888888888888888888888888777553
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.15 Score=64.92 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 002440 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQE 728 (921)
Q Consensus 649 sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE 728 (921)
.|...+..++..++....+-..+..++..+...+..+..++..++.+...|..+++..+.++.+...++..++.......
T Consensus 401 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1163)
T COG1196 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666666666666666667777777777777666666665555555555444444
Q ss_pred hHHHHHHHHHHH
Q 002440 729 GRANQLEEEIKE 740 (921)
Q Consensus 729 ~r~~qLEeel~~ 740 (921)
..++.++..+..
T Consensus 481 ~~l~~~~~~~~~ 492 (1163)
T COG1196 481 KELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.89 E-value=0.15 Score=62.72 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQA 586 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~A 586 (921)
.+..+|.+|++.++..+..-
T Consensus 375 ~~~~Ei~~l~d~~d~~e~ki 394 (775)
T PF10174_consen 375 RLQGEIEDLRDMLDKKERKI 394 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777776665443
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.88 E-value=0.15 Score=62.56 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=24.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002440 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHV 896 (921)
Q Consensus 854 ~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee 896 (921)
.++..++.-.+++..++.++..++.....+..++..+..+..+
T Consensus 898 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666655555543
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.85 E-value=0.27 Score=64.59 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (921)
Q Consensus 340 s~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L 419 (921)
...+++.|+.+=.+|-..=...-+.+.+++.+...|+..+.+|+.....+... ..+.+.-|-+||..|++-|+.|
T Consensus 743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s-----~~~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEES-----EMATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677666665554444334556666666666666666666555544432 2455677777787777777766
Q ss_pred HHHHHHHHHHhh-hhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002440 420 TKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (921)
Q Consensus 420 ~KERDaLRre~a-k~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~K 488 (921)
.+....-..++. -.....-.|..=--+|..++-+-..|...--..++.|-+|-.++.++++.+...+.+
T Consensus 818 k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 818 KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555331111110 011222244444456667777777777777777888888888888888888777653
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.76 E-value=0.03 Score=59.18 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 580 SRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (921)
Q Consensus 580 eRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~e 656 (921)
+-....+..+++.+...|..|..+|..++.|++.+-..| .+|=++|..|...+.........+...|-+=|.+
T Consensus 161 E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v----~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 161 EASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRV----KKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788999999999999999999999999998876 5788999999988888888887777777544443
No 26
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.76 E-value=0.28 Score=62.13 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE 668 (921)
Q Consensus 589 rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eRE 668 (921)
.+..|..+...++.+++.+.+.+.-+ .|--| .+.=...++|=.-|++....+.++-. ......
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~---------~L~~~-----e~~~~e~~~~lseek~ar~k~e~~~~---~i~~e~ 730 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL---------RLQDK-----EAQMKEIESKLSEEKSAREKAENLLL---EIEAEL 730 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhH-----HHHHHHHHHHhcccccHHHHHHHHHH---HHHHHH
Confidence 44555556666666666665555544 11111 12222233444444444333333221 122222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHH
Q 002440 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEA---DTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 669 re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~---~~qE~r~~qLEeel~~l~~k~ 745 (921)
..+.-.+...+.+.+.+......+..+...|+.+||.+.........++- .+... ...+.++..+...+..++.+.
T Consensus 731 e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~ 809 (1317)
T KOG0612|consen 731 EYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQEQEVNTKMLEKQLKKLLDELAELKKQL 809 (1317)
T ss_pred HHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455677777777777888888888889887766654433333 22222 223444444444444443444
Q ss_pred H
Q 002440 746 K 746 (921)
Q Consensus 746 ~ 746 (921)
.
T Consensus 810 e 810 (1317)
T KOG0612|consen 810 E 810 (1317)
T ss_pred H
Confidence 3
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.61 E-value=0.38 Score=59.47 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhHHhHHHHHH
Q 002440 471 LRAQIRELEEEKKGLVTKLQVEENKVESIKR 501 (921)
Q Consensus 471 LRakikE~Eee~~~Lk~KlE~e~~~le~~kr 501 (921)
||+|++++.+.+..|+.|-.-+..++..+.|
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elek 259 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEK 259 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 9999999999998888655555555544433
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.61 E-value=0.49 Score=60.65 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 396 AELETLREEYHQRVATLERKVYALTKERDTL 426 (921)
Q Consensus 396 ael~~LkeEyteRIdALErKLQ~L~KERDaL 426 (921)
..+..++++|..+++++...+.....+.+.+
T Consensus 302 ~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i 332 (1201)
T PF12128_consen 302 DEIKELRDELNKELSALNADLARIKSELDEI 332 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887777777765
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.60 E-value=0.071 Score=56.38 Aligned_cols=113 Identities=27% Similarity=0.374 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHH
Q 002440 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQ---AVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLR 627 (921)
Q Consensus 551 ~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~---Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLR 627 (921)
+..++.+.....++...|..++.+.+..+..+..+ +.++=..+.+++...+.|+..++.++.+|-..+... .--|+
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~-~~~lk 158 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV-GNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH-HHHHH
Confidence 34444544444555555555555555555444432 222223334444444444444444444444332222 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAAS 664 (921)
Q Consensus 628 QIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA 664 (921)
.+|.-...|..+-...+.--+.|..||.+++.+++.|
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333
No 30
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.39 E-value=0.68 Score=57.08 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.9
Q ss_pred hhhcccCCCCC
Q 002440 63 MSFMGHKSEGS 73 (921)
Q Consensus 63 ~~~~~~~~~~~ 73 (921)
..+.|..|.+.
T Consensus 26 ~~i~G~NGsGK 36 (1179)
T TIGR02168 26 TGIVGPNGCGK 36 (1179)
T ss_pred EEEECCCCCCh
Confidence 34444444444
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.37 E-value=0.57 Score=55.73 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 451 MAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (921)
Q Consensus 451 MEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk 486 (921)
+.+-..+-....+++..|+-|..+..+.++.+..++
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555555555555544444
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.33 E-value=0.21 Score=60.76 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 463 AQEAQIRKLRAQIREL 478 (921)
Q Consensus 463 q~e~iIKKLRakikE~ 478 (921)
.+++-|||||+.+.-.
T Consensus 422 rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 422 RLEADVKKLRAELQSS 437 (697)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5777788888766543
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.25 E-value=0.77 Score=54.64 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=8.5
Q ss_pred cccccCCCCcccccc
Q 002440 188 SGEAKSGPFEADQIE 202 (921)
Q Consensus 188 ~~~~~~~~~~~~~~~ 202 (921)
+++..+.|+.-|-|-
T Consensus 27 tlt~~~~ps~~DWIG 41 (546)
T PF07888_consen 27 TLTPGFHPSSKDWIG 41 (546)
T ss_pred ecCCCCCCCCCCeeE
Confidence 555556666655553
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.99 Score=55.23 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHhh-hhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKK------SDAAALLK-EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (921)
Q Consensus 407 eRIdALErKLQ~L~KERDaLRre~ak~------s~aaa~La-EKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~E 479 (921)
+=|.+||+||....+-|..+-+++... .+..+.-+ -.-.-+.. +-|+.+=....++++-||+||..++..|
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888877777776654443310 00000000 00000111 5566666667788888888888888888
Q ss_pred HHHHHHHhHH
Q 002440 480 EEKKGLVTKL 489 (921)
Q Consensus 480 ee~~~Lk~Kl 489 (921)
+.+..|...+
T Consensus 566 e~~~~~e~~~ 575 (697)
T PF09726_consen 566 EQIRELESEL 575 (697)
T ss_pred HHHHHHHHHH
Confidence 8777776533
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.19 E-value=1.3 Score=56.20 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002440 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 670 e~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~ 745 (921)
.+.+.+..+.++....|..+...-+.+.+|-..++..+.++...-.+...+...+....++....+..++.|...|
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666665555544333333344444444444444444455444444
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.16 E-value=1.1 Score=54.98 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 608 ERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQ 677 (921)
Q Consensus 608 EaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~ 677 (921)
-.+.+++..-+..+--+|-|||-.+|-.+-.+.-+-+|+ ..++.++|++++.+...-|.+.+++.+
T Consensus 311 ~gdseqatkylh~enmkltrqkadirc~LlEarrk~egf----ddk~~eLEKkrd~al~dvr~i~e~k~n 376 (1265)
T KOG0976|consen 311 DGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGF----DDKLNELEKKRDMALMDVRSIQEKKEN 376 (1265)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333344444444455677888888888887777777664 455688999888887766666664433
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=1.5 Score=55.75 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002440 402 REEYHQRVATLERKVYALTKERDTLRREQNK-KSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (921)
Q Consensus 402 keEyteRIdALErKLQ~L~KERDaLRre~ak-~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Ee 480 (921)
+..|..-|..+.+.|-.|...+..-..-... .....+.=..|++-|.-|+.|-+-+=++-.....+|=..|.++....+
T Consensus 262 T~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~ 341 (1293)
T KOG0996|consen 262 TNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQE 341 (1293)
T ss_pred ccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888888888888887777611110000 011222334455566666666665544444444444445555555555
Q ss_pred HHHHHHh
Q 002440 481 EKKGLVT 487 (921)
Q Consensus 481 e~~~Lk~ 487 (921)
++..+..
T Consensus 342 ~~~~~~e 348 (1293)
T KOG0996|consen 342 ELEKIEE 348 (1293)
T ss_pred HHHHHHh
Confidence 4444443
No 38
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.11 E-value=0.7 Score=51.64 Aligned_cols=260 Identities=23% Similarity=0.313 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (921)
Q Consensus 345 ekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERD 424 (921)
+-|+.+|..|.+..-.-...+...-.....|.+.|..|+..-..+..+. .--+||+- -.|=+||+.|.+|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a------EqEEE~is--N~LlKkl~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA------EQEEEFIS--NTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5566666666654332233333444456667777777776666555543 12356653 356667777777777
Q ss_pred HHHHHhhhhhH-HHHHhhhhHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---hHHhHHHH
Q 002440 425 TLRREQNKKSD-AAALLKEKDEIINQVMAEGEELSKK-QAAQEAQIRKLRAQIRELEEEKKGLVTKLQV---EENKVESI 499 (921)
Q Consensus 425 aLRre~ak~s~-aaa~LaEKDEqIa~LMEEGEKLSKk-Qlq~e~iIKKLRakikE~Eee~~~Lk~KlE~---e~~~le~~ 499 (921)
.|-..+.+--. ....|-- +|.+|+.|--.|-.+ +..++..|-||+.+|..++.+...+...++. +.-.+++
T Consensus 95 ~L~~~~e~EEE~ltn~L~r---kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn- 170 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSR---KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLEN- 170 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH-
Confidence 66443332111 1111111 233344443333332 2335667777888887777666544432221 1111111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 500 KRDKTATEKLLQETIEKHQVELG---EQKDYYTNALAAAKEA----EELAEARANNEARAELESRLREAGERETMLVQAL 572 (921)
Q Consensus 500 kr~~~a~EK~lqE~lEk~qkEL~---a~k~~~~~~L~aAKe~----a~~AEarA~~Ea~~~Le~~lkEaeErEe~L~~qI 572 (921)
+.|.-..-.+.++.+.++ +-+-.++..|.++... .....-.........+...+..+..-..+|++++
T Consensus 171 -----~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 171 -----TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 011111111122322221 1222222222211000 0000000000001111222222222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 002440 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPES 621 (921)
Q Consensus 573 ~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eA 621 (921)
......-.--.+.....|..+|.|+..|+++|+---.|.+.|+-..+++
T Consensus 246 ~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 246 AASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222344455577899999999999999999999988765543
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.03 E-value=1.8 Score=54.83 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=88.9
Q ss_pred hhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHH
Q 002440 430 QNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKL 509 (921)
Q Consensus 430 ~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~ 509 (921)
..+...+...|.++..+|..++.|+..-..........++.+|...-+++.++.+... .++..++.....+|
T Consensus 308 ~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n-------~i~~~k~~~d~l~k- 379 (1074)
T KOG0250|consen 308 QGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN-------SIRKLKKEVDRLEK- 379 (1074)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-
Confidence 3344555667888888888888888777666665555555555554444444433322 11112221111111
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002440 510 LQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVF- 588 (921)
Q Consensus 510 lqE~lEk~qkEL~a~k~~~~~~L~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~- 588 (921)
++..++++. ...+...+ -....-...|++++..+++....|.....+++.++..-+++...
T Consensus 380 ---~I~~~~~~~---~~~~~~~~------------~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 380 ---QIADLEKQT---NNELGSEL------------EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred ---HHHHHHHHH---HhhhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 122211111 00000000 00111233445555555555556777777777777766666532
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Q 002440 589 --REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQET 635 (921)
Q Consensus 589 --rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq 635 (921)
....|++-|+....-|+.+..-.-.--+--|+..--||+-|+.=-.+
T Consensus 442 ~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 442 EGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR 490 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc
Confidence 23344444444444444444433333344557777888888764433
No 40
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.94 E-value=2.2 Score=54.57 Aligned_cols=12 Identities=33% Similarity=0.221 Sum_probs=7.5
Q ss_pred HhhhhhcCcccc
Q 002440 32 KNFDTALGFDEK 43 (921)
Q Consensus 32 ~~~~~al~~~~~ 43 (921)
|+-++|+=-+||
T Consensus 115 Kr~~tA~F~EER 126 (1317)
T KOG0612|consen 115 KRAETACFREER 126 (1317)
T ss_pred hchhHHHHHHHh
Confidence 466677655565
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.92 E-value=1.5 Score=52.27 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 348 KREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLR 427 (921)
Q Consensus 348 ~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLR 427 (921)
+++|..|+-.|-. -=+.+..|..+|--|..+|..|+..-. .+...++.-|---|..+=+-|-...++|..+.
T Consensus 41 K~El~~LNDRLA~-------YIekVR~LEaqN~~L~~di~~lr~~~~-~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 41 KKELQELNDRLAV-------YIEKVRFLEAQNRKLEHDINLLRGVVG-RETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777766653 356777889999999999999988642 33456688888888888777777777777776
Q ss_pred HHhhhhh
Q 002440 428 REQNKKS 434 (921)
Q Consensus 428 re~ak~s 434 (921)
.++.+..
T Consensus 113 ~ei~kl~ 119 (546)
T KOG0977|consen 113 IEITKLR 119 (546)
T ss_pred HHHHHhH
Confidence 6665543
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.90 E-value=0.00023 Score=87.08 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 346 KLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDT 425 (921)
Q Consensus 346 kL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDa 425 (921)
||.++|..++..++.+.....++.+...+|+.+++.|..+++..+... ..++-=.--|-.-|+.+..++..+.-++|.
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~--~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA--AELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888777777777777777777777777777665543 222223344555555555555555555554
Q ss_pred HHH
Q 002440 426 LRR 428 (921)
Q Consensus 426 LRr 428 (921)
+.+
T Consensus 403 ~q~ 405 (859)
T PF01576_consen 403 AQR 405 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.87 E-value=1.6 Score=51.82 Aligned_cols=56 Identities=18% Similarity=0.392 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRP 624 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrP 624 (921)
+..+...|...+.+..+.-..-+.++ ..+..++.++..++.+...+...+.....|
T Consensus 322 ~~e~~~~l~~Ei~~l~~sY~l~~~e~-~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ 377 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQSYTLNESEL-ESVRQLEKQLESLEKQYDEITERIAEQEIA 377 (569)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33444445555555544432222222 334455555555555555544444433333
No 44
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.82 E-value=2.5 Score=53.29 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE 647 (921)
|...+.+|.+.+.+.-++-+..|+..|.=.-++..=+++.+.+..-++.- .--+-.++|.=.++.|....++--..--
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq--~~e~e~~~q~ls~~~Q~~~et~el~~~i 490 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ--SLENEELDQLLSLQDQLEAETEELLNQI 490 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666555555544443333333333333333322222 1234456666666666665555444444
Q ss_pred HHHHHHHHHHHHH
Q 002440 648 RSLNLRLQEAEAK 660 (921)
Q Consensus 648 ~sL~~RL~eaEk~ 660 (921)
++|..+|.+....
T Consensus 491 knlnk~L~~r~~e 503 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLE 503 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.77 E-value=2 Score=51.37 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002440 622 TRPLLRQIEAIQETTARRA-EAWAAVERSLNLRLQEAEAKAAA-------SEERERSVNERLSQTLSRINVLEAQISCLR 693 (921)
Q Consensus 622 TrPLLRQIEtLQaq~a~as-enWe~iE~sL~~RL~eaEk~~~e-------A~eREre~~Erl~~lksri~~LEsQls~lR 693 (921)
...|--.|.-+.++|.... .|=+.||.....+|.++.+...- +.+.=+.+...+..+..+++.||..++.|-
T Consensus 244 ~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~ 323 (546)
T KOG0977|consen 244 KNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALE 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHH
Confidence 5677778888888987765 46677899999999999853221 112224555666777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 002440 694 AEQTQLTKSLEKER 707 (921)
Q Consensus 694 ~E~~qL~~qLE~Er 707 (921)
.....|.-+|..++
T Consensus 324 ~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 324 KRIEDLEYQLDEDQ 337 (546)
T ss_pred HHHHHHHhhhhhhh
Confidence 77777776666544
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.73 E-value=1.2 Score=48.22 Aligned_cols=168 Identities=18% Similarity=0.261 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH--HHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA--RRAEAWA 644 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a--~asenWe 644 (921)
.+..++..||..++.+. ..=..|...|..|+..|.-+..-+++= |..|+.+.. ...+.+.
T Consensus 100 ~le~el~~lrk~ld~~~----~~r~~le~~i~~L~eEl~fl~~~heeE--------------i~~L~~~~~~~~~~e~~~ 161 (312)
T PF00038_consen 100 DLEEELESLRKDLDEET----LARVDLENQIQSLKEELEFLKQNHEEE--------------IEELREQIQSSVTVEVDQ 161 (312)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHTTSTT-----------
T ss_pred HHHHHHhhhhhhhhhhh----hhHhHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhccccccceeecc
Confidence 45556666665554332 222345555666666665555444431 222322221 1122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002440 645 AVERSLNLRLQEAEAKAAASEERE-----RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLA 719 (921)
Q Consensus 645 ~iE~sL~~RL~eaEk~~~eA~eRE-----re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~a 719 (921)
.....|..-|.+...+-+....+= .-...++..+..........+..++.++..+...+..
T Consensus 162 ~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~-------------- 227 (312)
T PF00038_consen 162 FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQS-------------- 227 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred cccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhH--------------
Confidence 334457777777777666555432 3333355555555555555555555555555554443
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 720 AKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIERE 766 (921)
Q Consensus 720 akee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~E 766 (921)
...+...+.+++..|+..|..++..|...+......+..++.++..-
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l 274 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 33344445666777888888888888777777777777666665443
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.69 E-value=4 Score=53.94 Aligned_cols=96 Identities=24% Similarity=0.345 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 588 FREDMLRRDIEDLQRRYQA---SERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (921)
Q Consensus 588 ~rEdeLR~EIsdLeqRLEe---AEaRaEELSss--v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~ 662 (921)
.+...++....+|+++++. ++....+..+. .+-... -.++.|+ ..+-+++.++.....
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------~~~~~~~~~~~~~~~ 575 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE---DELEQLQ--------------EELEARLESLSESVS 575 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH---HHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 3445677778888886642 33333444331 111111 1223332 223345677777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002440 663 ASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (921)
Q Consensus 663 eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~ 700 (921)
.+.++=..+..++..+..+|..++.....|.+-...|.
T Consensus 576 ~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~ 613 (1486)
T PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALA 613 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHH
Confidence 77777788888888888889888888888776555543
No 48
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.68 E-value=0.0011 Score=79.44 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002440 545 RANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (921)
Q Consensus 545 rA~~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELS 615 (921)
|.+.+-...+++++++++++...|..++..|-+.+.++...-. .-+.++.+|.+|+.++.+...+++.+-
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~-qle~~k~qi~eLe~~l~~~~~~~~~l~ 390 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKS-QLEEYKKQIQELEQKLSEESRRADKLE 390 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777766677777777777777655433 334677777777777777776666544
No 49
>PRK11637 AmiB activator; Provisional
Probab=96.61 E-value=1.9 Score=49.21 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 002440 569 VQALEELRQTL 579 (921)
Q Consensus 569 ~~qI~DLRekL 579 (921)
..+|..+...+
T Consensus 81 ~~qi~~~~~~i 91 (428)
T PRK11637 81 EEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 50
>PRK11637 AmiB activator; Provisional
Probab=96.60 E-value=2 Score=49.15 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQAS 607 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeA 607 (921)
+..+|..+...+...+.+-...+..+..-...|..|+..+
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.59 E-value=2.2 Score=49.58 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (921)
Q Consensus 342 ~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~K 421 (921)
-.++..+++|..++.-|.....+.+.+.++|+.+...+..+..++-..... ...+-.+|+.++..+..|-.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~---------l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD---------LKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHhhHHHHHHHHHHHHH
Confidence 356777788888888887776777777778888887777777776544432 23445788888888876655
Q ss_pred HH
Q 002440 422 ER 423 (921)
Q Consensus 422 ER 423 (921)
+.
T Consensus 109 q~ 110 (420)
T COG4942 109 QE 110 (420)
T ss_pred HH
Confidence 55
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.58 E-value=3.2 Score=51.35 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH---HHHhhhhh
Q 002440 869 YMSRLASMESIRDSLAEELVKMTAQV---HVQVVFIL 902 (921)
Q Consensus 869 LQ~el~~lE~tR~~LaEELVkLT~q~---Ee~v~~i~ 902 (921)
|+.+-.-++--=+.|.+||--+--|+ .+.|.++|
T Consensus 605 l~let~~~e~k~~k~eeelqek~~qVme~~elvtyL~ 641 (1265)
T KOG0976|consen 605 LCLETVHFEDKLDKLEEELQEKECQVMEHPELVTYLP 641 (1265)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhccHHHHhhch
Confidence 44455555555566677776555555 55666655
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=5.1 Score=51.44 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERS 670 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre 670 (921)
..+..||..|+..++..+.-+++.-.+...-|.++---|+.++..+.-...-.. ....+++-++.+++-...++-.
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n----~~~~e~~vaesel~~L~~~~~~ 518 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVN----EARSELDVAESELDILLSRHET 518 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444444444444444444444444433322111111 1122334444444444444444
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~ 705 (921)
+..+...++.++..+...+...+.++..+...|..
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455555544444444444444444444444443
No 54
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.32 E-value=0.7 Score=45.09 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHH
Q 002440 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632 (921)
Q Consensus 554 Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtL 632 (921)
++..+..+...-..|+..+...+..|...+..+..++..|..+|.+++.||.++...| .=|+-|||+|
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN-----------~lLh~QlE~l 131 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQN-----------KLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhc
Confidence 3333444444445677888888888999999999999999999999999999998877 4566677654
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.16 E-value=4.8 Score=48.91 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=20.4
Q ss_pred HH-HHHHHHHHHHHhhhhhhhhhhhhhhh
Q 002440 885 EE-LVKMTAQVHVQVVFILRISIELLYIS 912 (921)
Q Consensus 885 EE-LVkLT~q~Ee~v~~i~~l~~~~~~~~ 912 (921)
++ |.+|....|++...+..|.--+|.+.
T Consensus 476 ~~~i~~l~~~~e~mk~kl~elq~lv~~l~ 504 (617)
T PF15070_consen 476 EEYISRLAQDREEMKVKLLELQELVLRLV 504 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 56888888888888877776666554
No 56
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.15 E-value=0.0014 Score=80.56 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDM---LRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAW 643 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEde---LR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenW 643 (921)
+|..+|.|++..|.++...+...|-. |-..+.++..++..+-...+-+.... +-+--.|=.|+.+|......|
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~----r~~~te~~~Lk~~lee~~e~~ 428 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA----RELETELFKLKNELEELQEQL 428 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHhhhHHHHHHH
Confidence 57778888888887776655443332 33444555544443333333222222 223333445555555555555
Q ss_pred HHHHH
Q 002440 644 AAVER 648 (921)
Q Consensus 644 e~iE~ 648 (921)
..+++
T Consensus 429 e~ler 433 (859)
T PF01576_consen 429 EELER 433 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55553
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.00 E-value=5.1 Score=47.80 Aligned_cols=286 Identities=16% Similarity=0.286 Sum_probs=156.4
Q ss_pred HHHHHHHHhhHHHHH-----HHHHHHhhh----cChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHhhhh
Q 002440 369 ADEIAKMMNENEHLK-----AVIEDLKRK----TNDAELETLREEYHQ----RVATLERKVYALTKERDTL--RREQNKK 433 (921)
Q Consensus 369 s~eiA~L~e~NdqLk-----~eie~lk~k----s~eael~~LkeEyte----RIdALErKLQ~L~KERDaL--Rre~ak~ 433 (921)
.+.|..|...-..|. +++..++.- .+...++.++..|.. ++..++..|..+-.-.+.. ++.....
T Consensus 28 ~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~ 107 (569)
T PRK04778 28 YKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEI 107 (569)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 445556655555543 344444431 345567777777765 6667777776555555532 2222234
Q ss_pred hHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHH
Q 002440 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQET 513 (921)
Q Consensus 434 s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~ 513 (921)
..+...|.+-+++|..+..+=..|=..+-+|+..|..|+.+-+++.+.+-.-.-..- ..
T Consensus 108 ~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G---------------------~a 166 (569)
T PRK04778 108 NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFG---------------------PA 166 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc---------------------ch
Confidence 556678888888888888888888888888888888888777776665433221000 00
Q ss_pred HHHHHHHHhhhHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002440 514 IEKHQVELGEQKDYYT--NAL------AAAKEAEELAEARANNEARAELESRLREAGER-ETMLVQALEELRQTLSRTEQ 584 (921)
Q Consensus 514 lEk~qkEL~a~k~~~~--~~L------~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeEr-Ee~L~~qI~DLRekLeRaee 584 (921)
+..+.+.|+.....|. ..| .+|++. +-..+.........=.++..+=.. ...+=.|+.+|+..++....
T Consensus 167 ~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~--l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 167 LDELEKQLENLEEEFSQFVELTESGDYVEAREI--LDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111111111111 000 011110 000000000000000111111111 12366789999999988887
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 585 QAVFRE-DMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (921)
Q Consensus 585 ~Aa~rE-deLR~EIsdLeqRLEeAEaRaEELSss-v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~ 662 (921)
+.-.-+ ..+-.+|..|+.++..+......+.=- +...-..+-.+|.+|-..+..--.+-..+++++ ..+...+.
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~----~~l~~~l~ 320 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNS----DTLPDFLE 320 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 766555 367788888888887766555544333 444556677888888888877777777777665 34444555
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 002440 663 ASEERERSVNERLSQTLSR 681 (921)
Q Consensus 663 eA~eREre~~Erl~~lksr 681 (921)
.+.+.-..+...+..++..
T Consensus 321 ~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5555555555555555444
No 58
>PRK09039 hypothetical protein; Validated
Probab=95.99 E-value=0.73 Score=51.75 Aligned_cols=7 Identities=29% Similarity=-0.026 Sum_probs=3.7
Q ss_pred HHHHHHh
Q 002440 869 YMSRLAS 875 (921)
Q Consensus 869 LQ~el~~ 875 (921)
+.|+|+.
T Consensus 284 ~N~~LS~ 290 (343)
T PRK09039 284 DNWELSS 290 (343)
T ss_pred cHHHHHH
Confidence 4555554
No 59
>PRK11281 hypothetical protein; Provisional
Probab=95.94 E-value=2.1 Score=54.89 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 592 MLRRDIEDLQRRYQASERRCEELVTQ-VP-----ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (921)
Q Consensus 592 eLR~EIsdLeqRLEeAEaRaEELSss-v~-----eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~ 665 (921)
.|+..+.+.-++++.+..+-+.+... .+ -...++ +|+|+..++....-..|+..=..+..+|..++.+-+.|.
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 45555555555555555555555543 11 133444 889999999999999999999999888888888777666
Q ss_pred HHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 666 ERERSVNERLSQTLSRINVL--------EAQISCLRAEQTQLTKSLEKERQRA 710 (921)
Q Consensus 666 eREre~~Erl~~lksri~~L--------EsQls~lR~E~~qL~~qLE~Er~r~ 710 (921)
.+=.++..++.++..+++.. +++...+.+|+..+..+.+..++-+
T Consensus 163 ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 163 AALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555566666665555442 2444445555555554444433333
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=7.4 Score=48.30 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 592 MLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSV 671 (921)
Q Consensus 592 eLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~ 671 (921)
+|+.-...|+.+|+.+--..++|+.-+.|.-..+-.|-+.+-..... .+---.-=..|.+||.+.+..+--.+----.+
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q-~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ-RELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 46777788888999998899999888888777766653333222111 11111222456677777776655555444445
Q ss_pred HHHHHHH
Q 002440 672 NERLSQT 678 (921)
Q Consensus 672 ~Erl~~l 678 (921)
+.++.+.
T Consensus 513 ~~qlkq~ 519 (1118)
T KOG1029|consen 513 NHQLKQK 519 (1118)
T ss_pred HHHHHHh
Confidence 5554444
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.72 E-value=6.5 Score=46.94 Aligned_cols=284 Identities=18% Similarity=0.317 Sum_probs=154.4
Q ss_pred HHHHHHHHhhHHHH-----HHHHHHHhhh----cChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHhhhh
Q 002440 369 ADEIAKMMNENEHL-----KAVIEDLKRK----TNDAELETLREEYH----QRVATLERKVYALTKERDTL--RREQNKK 433 (921)
Q Consensus 369 s~eiA~L~e~NdqL-----k~eie~lk~k----s~eael~~LkeEyt----eRIdALErKLQ~L~KERDaL--Rre~ak~ 433 (921)
.++|.+|...-..| ..++..++.- .+...++.++..|. ..+..++..|..+-.-.+.. ++.....
T Consensus 24 ~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i 103 (560)
T PF06160_consen 24 YKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAI 103 (560)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34555555555543 3344444442 12333555555553 45556666665544444432 2222223
Q ss_pred hHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHH
Q 002440 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQET 513 (921)
Q Consensus 434 s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~ 513 (921)
..+...|..-++.|..+..+=..|=..+-+++..|..|+.+-+++.+.+-......-. .
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~---------------------a 162 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGP---------------------A 162 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch---------------------h
Confidence 4555677777777777777777777777777777777776666665544433321111 1
Q ss_pred HHHHHHHHhhhHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002440 514 IEKHQVELGEQKDYYT--NAL------AAAKEAEELAEARANNEARAELESRLREAGER-ETMLVQALEELRQTLSRTEQ 584 (921)
Q Consensus 514 lEk~qkEL~a~k~~~~--~~L------~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeEr-Ee~L~~qI~DLRekLeRaee 584 (921)
+..+...|+.....|. ..| .+|++. +...+.........=.++..+=.. ...+-.|+.+|+...+....
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~ei--l~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREI--LEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1111111111111111 001 011110 011111111111111111111111 22577899999999999888
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 585 QAVFRED-MLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (921)
Q Consensus 585 ~Aa~rEd-eLR~EIsdLeqRLEeAEaRaEELSss-v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~ 662 (921)
..-.-+. .+-.+|..++.+|..+......+.=. +......+-.+|.+|-..+..--.+-..++..+ ..+...+.
T Consensus 241 ~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~----~~l~~~l~ 316 (560)
T PF06160_consen 241 EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNL----KELYEYLE 316 (560)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHH
Confidence 7766555 78899999999999988888777655 667778888899998888877777777777665 45555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002440 663 ASEERERSVNERLSQTL 679 (921)
Q Consensus 663 eA~eREre~~Erl~~lk 679 (921)
.+.+.-+.+...+..+.
T Consensus 317 ~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 317 HAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555553
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.64 E-value=13 Score=49.62 Aligned_cols=64 Identities=30% Similarity=0.373 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002440 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEA-----------KAAASEERERSVNERLSQTLSRINVLEAQISCL 692 (921)
Q Consensus 628 QIEtLQaq~a~asenWe~iE~sL~~RL~eaEk-----------~~~eA~eREre~~Erl~~lksri~~LEsQls~l 692 (921)
|+...=.+|....-+|...--.|.. |.+-.. .+....++||++...-..++.++..|+.++..+
T Consensus 590 qL~~~i~~l~~~ap~W~~a~~al~~-L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l 664 (1486)
T PRK04863 590 QLQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERL 664 (1486)
T ss_pred HHHHHHHHHHHhChHHHhhHHHHHH-HHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334566677788877666643 433222 222334466666666666666666666666543
No 63
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.32 E-value=0.16 Score=61.57 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~ 705 (921)
..+++..++.++..|+..+..|+.++..|..+|+.
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788888888888888888887777764
No 64
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.14 E-value=8.8 Score=44.83 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRY 604 (921)
Q Consensus 571 qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRL 604 (921)
++..++..+.....+....+.+.+.+...|...+
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~ 205 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL 205 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444444555554444443
No 65
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.12 E-value=8.8 Score=49.61 Aligned_cols=88 Identities=6% Similarity=0.023 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 592 MLRRDIEDLQRRYQASERRCEELVTQVPE--STRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERER 669 (921)
Q Consensus 592 eLR~EIsdLeqRLEeAEaRaEELSssv~e--ATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREr 669 (921)
.|+..+.+.-+.++.++.+.+.+...... .+.| +.|+|....+...+-..|+.......+|+.++.......-+...
T Consensus 69 ~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s-~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~ 147 (1109)
T PRK10929 69 QYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS-TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQT 147 (1109)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHH
Confidence 44444444444444444444433332221 2222 48888888888888888888888888888665555433223333
Q ss_pred HHHHHHHHHHh
Q 002440 670 SVNERLSQTLS 680 (921)
Q Consensus 670 e~~Erl~~lks 680 (921)
++..++.++..
T Consensus 148 ~~~~~l~~i~~ 158 (1109)
T PRK10929 148 EARRQLNEIER 158 (1109)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 66
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.04 E-value=10 Score=45.01 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=35.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHH--HHHHHHHHHHHHHHhhhHHHHH
Q 002440 456 ELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATE--KLLQETIEKHQVELGEQKDYYT 529 (921)
Q Consensus 456 KLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~E--K~lqE~lEk~qkEL~a~k~~~~ 529 (921)
.|-.-.-+|...|.-|+.-..|+.+-...+..=++ .+..++++...+.. +......+.+..+|..++..+.
T Consensus 117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~---~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 117 ELESAREQYASAVAELDSVKQELEKLRQELASALD---AKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555677778888887777776665555542111 11112222111111 1123445566667766665554
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.83 E-value=12 Score=44.78 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Q 002440 560 EAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARR 639 (921)
Q Consensus 560 EaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~a 639 (921)
...+.-..+..+...|...++|..+.-..-+.++ ..+..+..++.....+.+.+...+.+- +..|+.-
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~-~~~~~l~~~l~~l~~~~~~~~~~i~~~-----------~~~yS~i 377 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNEL-EIVRELEKQLKELEKRYEDLEERIEEQ-----------QVPYSEI 377 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcCHHHH
Confidence 3333333455556666666666666655444444 445666666666666666555443333 3335555
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002440 640 AEAWAAVERSLN---LRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQI 689 (921)
Q Consensus 640 senWe~iE~sL~---~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQl 689 (921)
.+.|..+...|. ....+.-..++.....|..+++++..++..+......+
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544442 12222223333334445555555555554444444443
No 68
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.76 E-value=10 Score=43.84 Aligned_cols=13 Identities=23% Similarity=0.435 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQAS 607 (921)
Q Consensus 595 ~EIsdLeqRLEeA 607 (921)
..+..+.+++..+
T Consensus 204 ~~l~~l~~~l~~~ 216 (498)
T TIGR03007 204 SEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=94.67 E-value=16 Score=45.48 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQASERR 610 (921)
Q Consensus 595 ~EIsdLeqRLEeAEaR 610 (921)
.++..+...+...+..
T Consensus 529 ~~l~~~~~~l~~le~~ 544 (895)
T PRK01156 529 ADLEDIKIKINELKDK 544 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 70
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.56 E-value=15 Score=44.82 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTE 583 (921)
Q Consensus 568 L~~qI~DLRekLeRae 583 (921)
|..++.+++..|..++
T Consensus 199 L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 199 LAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 71
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.53 E-value=5.1 Score=44.16 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CccchHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQV-------PESTRPLLRQIEAIQETTARR 639 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv-------~eATrPLLRQIEtLQaq~a~a 639 (921)
.+++-....|+.|.--.+-.+.-|.+|-.++..|+.|+..+++|++-|..-+ -+...---+||+.|...++.-
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556667777767777777888888888888888888888888876541 122344556666666655543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 640 senWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
.+|=-.|.-++.+++-.-+...+.+|.----+..+..|++..-..++-|..|+..
T Consensus 104 ----~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 104 ----HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred ----HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2344556667777777777777767766666777777777777777775555544
No 72
>PRK09039 hypothetical protein; Validated
Probab=94.47 E-value=4.2 Score=45.84 Aligned_cols=72 Identities=25% Similarity=0.258 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 599 DLQRRYQASERRCEELVTQVPEST---RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERL 675 (921)
Q Consensus 599 dLeqRLEeAEaRaEELSssv~eAT---rPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl 675 (921)
.++.++........++..-.+++. .-|=+||++|..| |+.++..++++..+.++...++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q------------------la~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ------------------LAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444444444333332 2344566666665 7778888888888888887777
Q ss_pred HHHHhHHHHHHHH
Q 002440 676 SQTLSRINVLEAQ 688 (921)
Q Consensus 676 ~~lksri~~LEsQ 688 (921)
..+..+|+.+-++
T Consensus 175 ~~L~~~L~~a~~~ 187 (343)
T PRK09039 175 ADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655433
No 73
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.40 E-value=16 Score=44.43 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ 417 (921)
.++.|++++..-...|.. ||-.+ ....-.|-+.+...+......+. ..+..|..-|-..||.|=+.-+
T Consensus 16 dle~LQreLd~~~~~l~~--~Q~~S-~~srk~L~e~trefkk~~pe~k~----k~~~~llK~yQ~EiD~LtkRsk 83 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQ--RQDES-EISRKRLAEETREFKKNTPEDKL----KMVNPLLKSYQSEIDNLTKRSK 83 (629)
T ss_pred cHHHHHHHHHHHHHHHHh--hhhhH-HHHHHHHHHhHHHHhccCcHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888777666663 34323 22222333333333333322222 3355666667777776655444
No 74
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=16 Score=44.13 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK----ERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK 746 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~----Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~ 746 (921)
...++..++..+..+.+.++.+++.+.-+.-+|.+ ........+.++.+.+.+. ..|+.++..+.-.+.
T Consensus 437 ~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~-------e~le~~l~~l~l~~~ 509 (581)
T KOG0995|consen 437 AENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEI-------EKLEEELLNLKLVLN 509 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 33445555666666666666555555544333322 1112222333344444444 445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhh
Q 002440 747 QELQEALMHRELLQQEIEREKTARVDLERRASA 779 (921)
Q Consensus 747 q~l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~ 779 (921)
..+.++-......+-++.+-.. ....||.+++
T Consensus 510 ~~m~~a~~~v~s~e~el~~~~~-~~~eer~ki~ 541 (581)
T KOG0995|consen 510 TSMKEAEELVKSIELELDRMVA-TGEEERQKIA 541 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5555555444444455544443 3466777664
No 75
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.29 E-value=8.8 Score=40.92 Aligned_cols=178 Identities=22% Similarity=0.314 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002440 465 EAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLL---QETIEKHQVELGEQKDYYTNALAAAKEAEEL 541 (921)
Q Consensus 465 e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~l---qE~lEk~qkEL~a~k~~~~~~L~aAKe~a~~ 541 (921)
++.|.+|+-.|.-++.++.+...++..-..++...-......++.. .....+... .-.....+|..|+-.+..
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE----~~e~~e~qLkEAk~iaE~ 78 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEE----KMEAQEAQLKEAKHIAEK 78 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877776666666654433332222221 111111111 222233455556555555
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 542 AEARANNEAR--AELESRLREAGERET-------MLVQAL---EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASER 609 (921)
Q Consensus 542 AEarA~~Ea~--~~Le~~lkEaeErEe-------~L~~qI---~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEa 609 (921)
|..+-.+-++ .-.+..+..++++-+ .|.-++ ..==..|.+.++.+..+++.+..+|..|-.||.+++.
T Consensus 79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 5444333221 122222222222111 121111 1112356778889999999999999999999999999
Q ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 610 RCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (921)
Q Consensus 610 RaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL 650 (921)
|++-+.-+| ++|=++|.-|+.-+.....-+..+=..|
T Consensus 159 rAE~aERsV----akLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 159 RAEFAERRV----AKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred hHHHHHHHH----HHHcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988665 5677777777666665555544444333
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.23 E-value=0.053 Score=65.50 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002440 862 KEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIEL 908 (921)
Q Consensus 862 REGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~~~~ 908 (921)
-..||+.|+.+|..++.--.-|-+=.-.-..++=+-|-.|...+|++
T Consensus 604 ~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGyki~~ 650 (722)
T PF05557_consen 604 QEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGYKIDF 650 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeee
Confidence 34578888888888888777777666666666667777776666664
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.04 E-value=15 Score=42.72 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 463 AQEAQIRKLRAQIRELEEEKKGLV 486 (921)
Q Consensus 463 q~e~iIKKLRakikE~Eee~~~Lk 486 (921)
+.++.|.+|+.++..++.++..++
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555444444444333
No 78
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.71 E-value=18 Score=42.43 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 403 EEYHQRVATLERKVYALTKERDTL 426 (921)
Q Consensus 403 eEyteRIdALErKLQ~L~KERDaL 426 (921)
+||+. ..|=+|+|++-||..+|
T Consensus 98 eEfis--ntLlkkiqal~keketl 119 (552)
T KOG2129|consen 98 EEFIS--NTLLKKIQALFKEKETL 119 (552)
T ss_pred HHHHH--HHHHHHHHHhhcccccc
Confidence 46654 26778999999998876
No 79
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.69 E-value=9.9 Score=40.37 Aligned_cols=137 Identities=26% Similarity=0.343 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhhHHHHHHHHHHHhhh--cChHHHHHHHHHH---HHHHHHHH
Q 002440 342 CELEKLKREMKMMETALQGA---ARQAQAKADEIAKMMNENEHLKAVIEDLKRK--TNDAELETLREEY---HQRVATLE 413 (921)
Q Consensus 342 ~elekL~~ei~~le~~l~~a---~rq~qsks~eiA~L~e~NdqLk~eie~lk~k--s~eael~~LkeEy---teRIdALE 413 (921)
.++..|++.++++...++.| .-.+..+-.-...|.+.|..|.++.-.+.+. +=.+.|..|.++- ..-++-+.
T Consensus 43 ~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 43 EEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 36777777777777777776 2333333333444445555544444333332 1123344444433 24455666
Q ss_pred HHHHHHHHHHHHHHHHhh----hhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 414 RKVYALTKERDTLRREQN----KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (921)
Q Consensus 414 rKLQ~L~KERDaLRre~a----k~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~L 485 (921)
++...|+.+.++|++++- -.....+.+-|+-.+|.. |-+..-.++.++--||.+|..+++.+..+
T Consensus 123 ~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e-------L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 123 KRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE-------LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777652 123344566666666655 56677888999999999999999877543
No 80
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.68 E-value=12 Score=40.32 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 577 QTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRL 654 (921)
Q Consensus 577 ekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSss--v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL 654 (921)
..++..-..+....+.||..+..|+.|+..++.+.+.+-.. +..++.++-+.|-..-+ +.+..+++.+|.. +
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~fer~e~k----i 175 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS--SSAMAAFERMEEK----I 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHH----H
Confidence 33333334444445566677777777777777776666655 55666777666666655 5555666665543 3
Q ss_pred HHHHHHHHHHHH
Q 002440 655 QEAEAKAAASEE 666 (921)
Q Consensus 655 ~eaEk~~~eA~e 666 (921)
.+.+...+.+.+
T Consensus 176 ee~ea~a~~~~e 187 (225)
T COG1842 176 EEREARAEAAAE 187 (225)
T ss_pred HHHHHHHHHhHH
Confidence 444444444443
No 81
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.68 E-value=28 Score=44.59 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHH
Q 002440 349 REMKMMETALQGAARQAQAKADEIAKMMNENE 380 (921)
Q Consensus 349 ~ei~~le~~l~~a~rq~qsks~eiA~L~e~Nd 380 (921)
+.|+.+..-+.|++.|...|.--|+.++..+=
T Consensus 43 e~ik~ll~llLg~avqcp~kelfi~riq~ldl 74 (1195)
T KOG4643|consen 43 EAIKQLLQLLLGSAVQCPTKELFIQRIQILDL 74 (1195)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhh
Confidence 56778888899999998888888887765443
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.64 E-value=34 Score=45.32 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQVP-ESTRPLLRQIEAIQETTARRAEAWAA 645 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSssv~-eATrPLLRQIEtLQaq~a~asenWe~ 645 (921)
..++.........|+.++.+..++++..+ .++..-|.++..--..|......|..
T Consensus 810 ~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~ 865 (1353)
T TIGR02680 810 ARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEV 865 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777777777633 55666666666555556666555543
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.55 E-value=18 Score=42.05 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 002440 510 LQETIEKHQVELGEQKDY 527 (921)
Q Consensus 510 lqE~lEk~qkEL~a~k~~ 527 (921)
..+....++.++..+...
T Consensus 172 ~k~~~~e~~~~i~~l~~~ 189 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMK 189 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455544443333
No 84
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.49 E-value=28 Score=43.88 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=10.7
Q ss_pred cchhhhcccCCCCCC
Q 002440 60 WPVMSFMGHKSEGSS 74 (921)
Q Consensus 60 ~~~~~~~~~~~~~~~ 74 (921)
=|+..+.|..|.+.+
T Consensus 25 ~gi~lI~G~nGsGKS 39 (908)
T COG0419 25 SGIFLIVGPNGAGKS 39 (908)
T ss_pred CCeEEEECCCCCcHH
Confidence 357777888887773
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.13 E-value=40 Score=44.67 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHH
Q 002440 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAIQETTAR 638 (921)
Q Consensus 573 ~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSss-v~eATrPLLRQIEtLQaq~a~ 638 (921)
..-+..+..+..+.......+..-...++..-+....-+.++.-. ..+.-..+..-++.+..++..
T Consensus 796 ~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~ 862 (1353)
T TIGR02680 796 AEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHT 862 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555555555555555 334444455555444444333
No 86
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.12 E-value=8.9 Score=44.81 Aligned_cols=165 Identities=27% Similarity=0.315 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH-----hhH--HHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAA-RQAQAKADEIAKMM-----NEN--EHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~-rq~qsks~eiA~L~-----e~N--dqLk~eie~lk~ks~eael~~LkeEyteRIdALEr 414 (921)
.+.+|+.+--.||.-|+--+ =+.+-+-..|.+|+ ++| .||+.+.-.|-+.. +.+-+.|-.-...|||.|+.
T Consensus 137 kl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentl-EQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 137 KLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTL-EQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 56777766556666555321 23344444555553 344 66666665555543 34556777777899999999
Q ss_pred HHHHHHHHHHH------HHHHhhhhh----HHHHHhhhhHHHHHHHHHHhhHh----hHHHHHHHHHHHHHHHHHHHHHH
Q 002440 415 KVYALTKERDT------LRREQNKKS----DAAALLKEKDEIINQVMAEGEEL----SKKQAAQEAQIRKLRAQIRELEE 480 (921)
Q Consensus 415 KLQ~L~KERDa------LRre~ak~s----~aaa~LaEKDEqIa~LMEEGEKL----SKkQlq~e~iIKKLRakikE~Ee 480 (921)
--.||.+..|+ +=+.+++.- |.++.+ --.|.-|..|-+.| +.-|..+.--+-.+|+.-.+..+
T Consensus 216 ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~---~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re 292 (552)
T KOG2129|consen 216 EKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAE---KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE 292 (552)
T ss_pred HHHHHHHHhcCcccCCCchhhhhcCccccCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888874 223333221 112211 23566677776654 55677777777778999999999
Q ss_pred HHHHHHhHHHHhHHhHHHHHHhhHHHHHHHH
Q 002440 481 EKKGLVTKLQVEENKVESIKRDKTATEKLLQ 511 (921)
Q Consensus 481 e~~~Lk~KlE~e~~~le~~kr~~~a~EK~lq 511 (921)
+...|+.||..+....++++|...+.++.++
T Consensus 293 en~rlQrkL~~e~erRealcr~lsEsessle 323 (552)
T KOG2129|consen 293 ENERLQRKLINELERREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999998887777664
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.93 E-value=17 Score=39.78 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 002440 552 AELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE 620 (921)
Q Consensus 552 ~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~e 620 (921)
..|+..+.++.++...|..++.+|+..+.+.+.....-+..+..++..+.+..+.....-++|.+-++.
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345566667777777888899999999999999999999999999999999988888888888887664
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.58 E-value=35 Score=42.57 Aligned_cols=245 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Q 002440 647 ERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEA-- 724 (921)
Q Consensus 647 E~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~-- 724 (921)
|..|..||.+++.++..+..-=.-+......+......+......+..+..+|...+..-+.|-.-+-++|-...++.
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred ------------HhHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCc
Q 002440 725 ------------DTQEG---RANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTP 789 (921)
Q Consensus 725 ------------~~qE~---r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~~~a~~eqt~ 789 (921)
...+| .+++|++++.-|... +.++-+-+...+.||+-.-. ....||.-...-.
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~q----lee~~rLk~iae~qleEALe-sl~~EReqk~~Lr------- 176 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQ----LEEAARLKEIAEKQLEEALE-SLKSEREQKNALR------- 176 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------
Q ss_pred ccccccCcCCCCccccccccC-cCCcchhhhhhhhccccccc----------------------ccccCCCCCCCCchhh
Q 002440 790 IARHTSAFENGSLSRKLSSAS-SLGSMEESHFLQASLDSSDS----------------------LSDRKNTVEPTMSPYY 846 (921)
Q Consensus 790 ~~~~~s~~~~~~~~~~lS~ss-Si~s~~~s~flQ~s~dssd~----------------------~~~~~~~g~~s~S~y~ 846 (921)
++=+.+-|.++...+++.. ++-|+.+++..-+.-...++ .+...+....++.|-.
T Consensus 177 --kEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 254 (717)
T PF09730_consen 177 --KELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSL 254 (717)
T ss_pred --HHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcc
Q ss_pred hccCChH-------HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002440 847 VKSMTPS-------AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRIS 905 (921)
Q Consensus 847 ~~s~s~s-------~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~ 905 (921)
..-+-.+ -|+-||.|-|.|=.+|...|.-....-+.-..+|..++.++..+-..+.-|.
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 89
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.50 E-value=30 Score=41.59 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEER 667 (921)
Q Consensus 625 LLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eR 667 (921)
|==|+++|-.-+.....-|.+.++.+...|+..+.....+...
T Consensus 374 ld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 374 LDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999999988777664
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=40 Score=42.42 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=8.7
Q ss_pred CCCCCCCcccCCCCchh
Q 002440 143 KVDSESNIVPNDPSESA 159 (921)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ 159 (921)
+.+.....+|+.+|.|.
T Consensus 79 ~lkLqG~~lP~~LPPsl 95 (1118)
T KOG1029|consen 79 KLKLQGIQLPPVLPPSL 95 (1118)
T ss_pred HHHhcCCcCCCCCChHH
Confidence 33444455566665543
No 91
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.96 E-value=40 Score=41.84 Aligned_cols=128 Identities=27% Similarity=0.409 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002440 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKS 702 (921)
Q Consensus 623 rPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~q 702 (921)
-.+++||+.|..+...-......+=.-|..+-.+++..++...+.-|...-.......+|..++-....+|. +
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK-------q 602 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK-------Q 602 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH-------H
Confidence 468999999999888887777777777777777777777776665554433333333333333333333332 2
Q ss_pred HHHHHHHHHHhHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 703 LEKERQRAAENRQEYLAAKE-------EADTQEGRANQLEEEIKELRRKHKQELQEALMHRE 757 (921)
Q Consensus 703 LE~Er~r~~~~rqe~~aake-------e~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~ 757 (921)
++.-......+.++-.+.+. ..-..+..++.|+.++.++..+|........++++
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie 664 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIE 664 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22211111122222222221 11223667888888888888777766655554443
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.90 E-value=25 Score=39.33 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHH
Q 002440 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQL----TKSLEKERQRAAENRQ 715 (921)
Q Consensus 640 senWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL----~~qLE~Er~r~~~~rq 715 (921)
..-.+|+-..|...+..++............++.-+..+..+-+.|..++..+++-.... ...|+.-|+++.....
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 344578888898999999988888888888888888888888888888888877655543 2445555555555555
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002440 716 EYLAAKEEADTQEGRANQLEEEIKEL 741 (921)
Q Consensus 716 e~~aakee~~~qE~r~~qLEeel~~l 741 (921)
++.+-+......+.++..+...+..+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555433
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.86 E-value=38 Score=41.38 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Q 002440 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVI 386 (921)
Q Consensus 340 s~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~ei 386 (921)
...|++.|+++|..+...+......+..+...+..+.++..+.+..+
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~ 372 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAEN 372 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666554444444444444444444443333
No 94
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.57 E-value=22 Score=38.08 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHH
Q 002440 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE----STRPLLRQIEAIQETTARRAEAWAA 645 (921)
Q Consensus 570 ~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~e----ATrPLLRQIEtLQaq~a~asenWe~ 645 (921)
.++..++..+ +.....+-+.+..-+..|..||...+....+-....+. -..-|.++|..|+..+..-...|..
T Consensus 70 ~~i~~~~~~v---~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~e 146 (247)
T PF06705_consen 70 EQINNMQERV---ENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREE 146 (247)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 44455556666666667777777666666555555332 2456999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHH
Q 002440 646 VERSLNLRLQEAEAKAAASEERERSVNE-RLSQTLSRINVLE-------AQISC-LRAEQTQLTKSLEKERQRA 710 (921)
Q Consensus 646 iE~sL~~RL~eaEk~~~eA~eREre~~E-rl~~lksri~~LE-------sQls~-lR~E~~qL~~qLE~Er~r~ 710 (921)
-|..|..||.+....+....++|+...+ .+..+...+..+. .++.. ...|...+...|..+.+.+
T Consensus 147 rE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 147 REENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988766 4444444444333 33333 4467777777777666443
No 95
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.43 E-value=28 Score=38.96 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 673 ERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (921)
Q Consensus 673 Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er 707 (921)
+++..++.++..+..++...|.++.+++.+|+.-.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777777777777776666665433
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.17 E-value=18 Score=36.34 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KE 422 (921)
-.+.+...++.++........++.++...+..|....+.+...+..++......+ .-.....+|.++++.|-.+
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~------~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE------KRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHhHHHHHhhHHHHHHH
Confidence 4555666666666666655444445444555555555555544444444332221 1123344788888888777
Q ss_pred HH
Q 002440 423 RD 424 (921)
Q Consensus 423 RD 424 (921)
.+
T Consensus 89 le 90 (143)
T PF12718_consen 89 LE 90 (143)
T ss_pred HH
Confidence 76
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.11 E-value=31 Score=39.01 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KE 422 (921)
+|+.+-+=+.+.+.-|+.|+|-=|++...+..|++.|..|- ..|......
T Consensus 63 Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le------------------------------~~L~~~~e~ 112 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALE------------------------------EQLGAALEQ 112 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHH------------------------------HHHHHHHHH
Confidence 45555555677888888887766676666666665555554 333333344
Q ss_pred HHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002440 423 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (921)
Q Consensus 423 RDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEK----LSKkQlq~e~iIKKLRakikE~Eee~~~Lk~ 487 (921)
..+||-+...+.+.-..+.-=++....-...... -|.-..++.-.+.-|+.+++.++++...|+.
T Consensus 113 v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~ 181 (306)
T PF04849_consen 113 VEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRS 181 (306)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333222221111111111110001111 1222344555677788888888888888874
No 98
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.06 E-value=40 Score=40.19 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 002440 339 DSVCELEKLKREMKMMETALQGA 361 (921)
Q Consensus 339 ds~~elekL~~ei~~le~~l~~a 361 (921)
....+|.++++++..+...|..+
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~ 53 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAA 53 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777777777777766
No 99
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.05 E-value=56 Score=41.81 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002440 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMM 376 (921)
Q Consensus 340 s~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~ 376 (921)
|-.+++ ||..++.|..-|+.. |+ .++.+.++|.
T Consensus 223 skte~e-Lr~QvrdLtEkLetl-R~--kR~EDk~Kl~ 255 (1243)
T KOG0971|consen 223 SKTEEE-LRAQVRDLTEKLETL-RL--KRAEDKAKLK 255 (1243)
T ss_pred ccchHH-HHHHHHHHHHHHHHH-Hh--hhhhhHHHHH
Confidence 444444 999999999999975 33 2355555554
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.05 E-value=19 Score=36.46 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 625 LLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
|=..|++|...+..-..+-+.++. +++...+++ ..+..++..+...++.|+..+..+|.++..|...|+
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~-------daEn~k~ei----e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLIL-------DAENSKAEI----ETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666665555444432 222222222 346677777888888888888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 705 KERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEI 763 (921)
Q Consensus 705 ~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~ql 763 (921)
..+.+..++ +..+..+..-|...+....+..++++-..+.|+.++
T Consensus 91 ~~q~kv~eL--------------E~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 91 KKQEKVSEL--------------ESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665544 333444444455555555555556655555555553
No 101
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.04 E-value=0.065 Score=64.72 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 002440 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLK 383 (921)
Q Consensus 340 s~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk 383 (921)
-...++.|+.++..++.++.-..-.+..+.++|.+|...|+.|.
T Consensus 244 l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555554332233333444445544444443
No 102
>PRK01156 chromosome segregation protein; Provisional
Probab=90.93 E-value=51 Score=41.17 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=7.0
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 002440 371 EIAKMMNENEHLKAVIED 388 (921)
Q Consensus 371 eiA~L~e~NdqLk~eie~ 388 (921)
.+..+......|..++..
T Consensus 306 ~l~~l~~~l~~l~~~l~~ 323 (895)
T PRK01156 306 DIENKKQILSNIDAEINK 323 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334433333
No 103
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.80 E-value=62 Score=41.93 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 673 ERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKE 706 (921)
Q Consensus 673 Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~E 706 (921)
.++..++.++..++.+++.|+.+...+...+...
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888887777766555543
No 104
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.79 E-value=55 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (921)
Q Consensus 628 QIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~ 665 (921)
|+..|+.++. . ...++.|...+.++...+....
T Consensus 482 el~~l~~~i~-~----~~~~~~l~~e~~~l~~~l~~~~ 514 (908)
T COG0419 482 ELEELEEELS-R----EKEEAELREEIEELEKELRELE 514 (908)
T ss_pred HHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666 1 3444444455555544444433
No 105
>PRK11281 hypothetical protein; Provisional
Probab=90.40 E-value=70 Score=41.87 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 602 RRYQASERRCEELVTQ---VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLS 676 (921)
Q Consensus 602 qRLEeAEaRaEELSss---v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~ 676 (921)
+|++.++.+.+++-.. ....+-||+.+.-..-.+++..-..-..-=..|.++...+...++...+-+|.+++++.
T Consensus 253 kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 253 KRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554221 11234678777554444443333322222334445555555555555555665555443
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.22 E-value=20 Score=40.43 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=46.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHhhhhH
Q 002440 371 EIAKMMNENEHLKAVIEDLKRKTN--DAELETLREEYHQRVATLERKVYALTKERDT----LRREQNKKSDAAALLKEKD 444 (921)
Q Consensus 371 eiA~L~e~NdqLk~eie~lk~ks~--eael~~LkeEyteRIdALErKLQ~L~KERDa----LRre~ak~s~aaa~LaEKD 444 (921)
.+..|.++|..|+.+...|+.... +..-..|-.+|++.++.+=.++-.|..|.+. ..++..-.+..-+.+.+..
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777765431 1112345556777777777777666655542 1122222223333444455
Q ss_pred HHHHHHHHHhhHhhH
Q 002440 445 EIINQVMAEGEELSK 459 (921)
Q Consensus 445 EqIa~LMEEGEKLSK 459 (921)
..+++++.|.+.|..
T Consensus 248 ~r~k~~~~EnEeL~q 262 (306)
T PF04849_consen 248 QRCKQLAAENEELQQ 262 (306)
T ss_pred HHHHHHhhhHHHHHH
Confidence 555555555555443
No 107
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.71 E-value=22 Score=34.92 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 733 QLEEEIKELRRKHKQELQEALMHRELLQQEIE 764 (921)
Q Consensus 733 qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE 764 (921)
.|+.++..++.+ +.++...-.+|-++|+
T Consensus 102 ~le~e~~~~~~r----~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQR----IEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 555556555444 3444444445555553
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.60 E-value=24 Score=35.41 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 649 sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
+|..|+.-++.+++.+..+=+.+++++..+.-+...++.+...|..+...
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~ 126 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQ 126 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 67777777777777777777777777777766666666666554444433
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.23 E-value=64 Score=39.68 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 351 MKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (921)
Q Consensus 351 i~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~K 421 (921)
|+.+...++.- ++.+..+++.+...+.+|..++..|+. -++..+.||..||+.|.-|..
T Consensus 6 l~qlq~Erd~y---a~~lk~e~a~~qqr~~qmseev~~L~e---------Ek~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 6 LKQLQAERDQY---AQQLKEESAQWQQRMQQMSEEVRTLKE---------EKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 233344777778777787777766655 256678999999999976543
No 110
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.08 E-value=46 Score=37.87 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002440 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQI 689 (921)
Q Consensus 649 sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQl 689 (921)
.|.++|.+++.++.....+=..-.-++..++.++..++.++
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 35555566655555544332222224444444444444443
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.04 E-value=78 Score=40.42 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHH
Q 002440 549 EARAELESRLREAGERETMLVQALEELRQTLS---RTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPL 625 (921)
Q Consensus 549 Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLe---Raee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPL 625 (921)
.....++....+++.....+..++.+|...+. |..++++.-.+.||.|...|. ..+...+-.--.+.+ +
T Consensus 344 ~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~----a~r~q~eka~~~~ee----~ 415 (980)
T KOG0980|consen 344 QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLL----ASRTQLEKAQVLVEE----A 415 (980)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh----H
Confidence 34455555566666666677777877777664 344555555566766665543 223333222211111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 626 LRQIEAIQETTARRAEAWAAV---ERSLNLRLQEAEAKAAASEERERSVNE 673 (921)
Q Consensus 626 LRQIEtLQaq~a~asenWe~i---E~sL~~RL~eaEk~~~eA~eREre~~E 673 (921)
.+++=+.+.+|..=-+....+ =..|+.+.++..+++..+..-=-++.+
T Consensus 416 e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 416 ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 233333333333322222222 234666677777776655543333333
No 112
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.32 E-value=56 Score=37.91 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002440 624 PLLRQIEAIQETTAR 638 (921)
Q Consensus 624 PLLRQIEtLQaq~a~ 638 (921)
-|-+||+.|+.+...
T Consensus 279 ~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 279 ATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344666666666544
No 113
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=71 Score=39.02 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTE---QQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAW 643 (921)
Q Consensus 567 ~L~~qI~DLRekLeRae---e~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenW 643 (921)
.|+++|.-|-..|..+. .+|+.-=..|-.|-.+|+++|+++++-.+-+-+ -|+.++.+++....+.
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~-----------Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLART-----------ELDQTKEALGQYRSQH 80 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 46666666666665443 345555566778899999999999987764322 2667777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002440 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (921)
Q Consensus 644 e~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~ 700 (921)
..+=++= +..-+.-+.+.+-+|-....++..+...+..++..++..+.|+.++.
T Consensus 81 kk~~~~g---~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 81 KKVARDG---EEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHhhccc---hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543322 22233344455556666666666666666666666665555555543
No 114
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.76 E-value=50 Score=36.68 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQASERRCEE 613 (921)
Q Consensus 595 ~EIsdLeqRLEeAEaRaEE 613 (921)
.++..|+.++..++++...
T Consensus 81 ~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVAR 99 (423)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444433
No 115
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.72 E-value=16 Score=36.02 Aligned_cols=90 Identities=26% Similarity=0.387 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (921)
Q Consensus 340 s~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L 419 (921)
+..-+++|...|+.++..+... -.+++.|..+-+.|..+|-.|-... .+ ......++..|+..+..+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l-------~~el~~l~~~r~~l~~Eiv~l~~~~--e~----~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASL-------QEELARLEAERDELREEIVKLMEEN--EE----LRALKKEVEELEQELEEL 80 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988865 4456666666666666665554433 11 122335556666666555
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHH
Q 002440 420 TKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452 (921)
Q Consensus 420 ~KERDaLRre~ak~s~aaa~LaEKDEqIa~LME 452 (921)
...-+ .+-..|=||.|.+..|..
T Consensus 81 ~~ry~----------t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 81 QQRYQ----------TLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHH----------HHHHHhcchHHHHHHHHH
Confidence 33333 334577888888877643
No 116
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=87.57 E-value=45 Score=38.10 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------hhcCCccchHHHH
Q 002440 563 ERETMLVQALEELRQTLSRTEQQAVF------REDMLRRDIEDLQRRYQASERRCEEL---------VTQVPESTRPLLR 627 (921)
Q Consensus 563 ErEe~L~~qI~DLRekLeRaee~Aa~------rEdeLR~EIsdLeqRLEeAEaRaEEL---------Sssv~eATrPLLR 627 (921)
+|-.+|+++|.+|++.+......... -...+-..+..|++.|..+ ..+++ +........+|+.
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l--~l~~~lg~~~~~~~~~~~~~~~~kl~~ 171 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL--KLEELLGEETAQDLSDPQKALSKKLLS 171 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh--hcccccchhhhcccccchhhHHHHHHH
Confidence 35568999999999999876432222 1234677888888888877 22222 1111234788999
Q ss_pred HHHHHHH
Q 002440 628 QIEAIQE 634 (921)
Q Consensus 628 QIEtLQa 634 (921)
||+.++.
T Consensus 172 ~l~~~k~ 178 (388)
T PF04912_consen 172 QLESFKS 178 (388)
T ss_pred hhhhccc
Confidence 9999963
No 117
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.12 E-value=47 Score=35.67 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=57.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHhhhhH
Q 002440 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKD 444 (921)
Q Consensus 369 s~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~----s~aaa~LaEKD 444 (921)
.+.+.+|+..|.++..-|+.+.. -|..+-++.-..-......++.+.+|+|++...+... +++-....---
T Consensus 29 ~~k~~e~~~~~~~m~~i~~e~Ek-----~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K 103 (207)
T PF05010_consen 29 KKKYEELHKENQEMRKIMEEYEK-----TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQK 103 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555555554443 2344455555555666677788888888777665532 23333444444
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 002440 445 EIINQVMAEGEELSKKQAAQEAQIRKLRA 473 (921)
Q Consensus 445 EqIa~LMEEGEKLSKkQlq~e~iIKKLRa 473 (921)
+.|.++....+.|=+....+...|++...
T Consensus 104 ~vi~~~k~NEE~Lkk~~~ey~~~l~~~eq 132 (207)
T PF05010_consen 104 EVIEGYKKNEETLKKCIEEYEERLKKEEQ 132 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55667777767776666666666655553
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.92 E-value=48 Score=35.59 Aligned_cols=166 Identities=22% Similarity=0.279 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002440 461 QAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEE 540 (921)
Q Consensus 461 Qlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~lEk~qkEL~a~k~~~~~~L~aAKe~a~ 540 (921)
+.++-.+|+++|..+...+.+...|+.+.+...........--...++.....++..+..-......+..-+ ++
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~---~e--- 77 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLL---KE--- 77 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH---hh---
Confidence 345556777777777777777777766555444333333333334444444444332222111111111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 002440 541 LAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE 620 (921)
Q Consensus 541 ~AEarA~~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~e 620 (921)
......-+..++....++-.+-++++.-|..++ .-|+-|+..+.++..|+...+.|.+-|-.-+
T Consensus 78 ---rdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k-----------~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA-- 141 (207)
T PF05010_consen 78 ---RDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK-----------KNEETLKKCIEEYEERLKKEEQRYQALKAHA-- 141 (207)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000000011122222222223333443333333 3577788888888888888887776664321
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 621 STRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAK 660 (921)
Q Consensus 621 ATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~ 660 (921)
-+.+..+...|..+.++..+.+..++..
T Consensus 142 ------------eekL~~ANeei~~v~~~~~~e~~aLqa~ 169 (207)
T PF05010_consen 142 ------------EEKLEKANEEIAQVRSKHQAELLALQAS 169 (207)
T ss_pred ------------HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1344456666666666655555554444
No 119
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.47 E-value=24 Score=40.42 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERS 649 (921)
Q Consensus 570 ~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~s 649 (921)
....+|+..++|.-.+-.. ..|....+-..+|+.|..-...+....+++...| ..|+......-+--..-|+.
T Consensus 191 vd~~eWklEvERV~PqLKv---~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L----~kl~~~i~~~lekI~sREk~ 263 (359)
T PF10498_consen 191 VDPAEWKLEVERVLPQLKV---TIRADAKDWRSHLEQMKQHKKSIESALPETKSQL----DKLQQDISKTLEKIESREKY 263 (359)
T ss_pred CCHHHHHHHHHHHhhhhee---eccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888877643 3455667788888888888888888887776544 55999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
|+.+|..+-.+...+.++=.++++++......++.+...++.+-.++.+...+.+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777766666666666666666666665555555555444443
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.33 E-value=14 Score=39.27 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 002440 622 TRPLLRQIEAIQETTARRA 640 (921)
Q Consensus 622 TrPLLRQIEtLQaq~a~as 640 (921)
|.++--++..||.++....
T Consensus 88 ~p~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLT 106 (206)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 4455555666655555444
No 121
>PF13514 AAA_27: AAA domain
Probab=85.77 E-value=1.2e+02 Score=39.23 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL 650 (921)
..++.++..+...+...+.+...|-...+-.+..=|+++...-..+......+..++..|
T Consensus 811 ~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 811 EELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777766555556667777666666666666666666665
No 122
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.52 E-value=96 Score=38.80 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEE-LSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (921)
Q Consensus 407 eRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEK-LSKkQlq~e~iIKKLRakikE~Eee~~~L 485 (921)
.+|+.++.+...+..-+..|...+....+....|..|=+.+-.++..... ||..+.++..-++.++.+++.+...++.+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333344445555544444334434444 88888888888888888888877777777
Q ss_pred HhHHHHhHHhHH
Q 002440 486 VTKLQVEENKVE 497 (921)
Q Consensus 486 k~KlE~e~~~le 497 (921)
+.|++....+++
T Consensus 659 k~k~~~Q~~~i~ 670 (717)
T PF10168_consen 659 KKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHh
Confidence 776666444443
No 123
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.32 E-value=1e+02 Score=37.95 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHH
Q 002440 551 RAELESRLREAGER-ETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQI 629 (921)
Q Consensus 551 ~~~Le~~lkEaeEr-Ee~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQI 629 (921)
...|+.++.+...+ +......+......+ .+.++-++..|..+...+..+++.++.-...+.+.+-+++..|.-
T Consensus 147 v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~---~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~-- 221 (629)
T KOG0963|consen 147 VRNLKERLRKLEQLLEIFIENAANETEEKL---EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD-- 221 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--
Confidence 33444444444432 223333444555554 567788899999999999999999999888887776665555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHH
Q 002440 630 EAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSR--------INVLEAQISCLRAEQTQLTK 701 (921)
Q Consensus 630 EtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksr--------i~~LEsQls~lR~E~~qL~~ 701 (921)
+-++|..-...-.+.=.-++.-|+.++..+..+.++=..+...+...++. +..+...+...-.+..+|..
T Consensus 222 --~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~ 299 (629)
T KOG0963|consen 222 --LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSN 299 (629)
T ss_pred --HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333344456667777777666666555555555444332 22333344444455556555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 002440 702 SLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ--ELQEALMHRELLQ 760 (921)
Q Consensus 702 qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q--~l~e~~~~~~llq 760 (921)
.++..+.-+.+.+..+ +......+..++.+-..|++++.++.. -+.+.|.+..+|.
T Consensus 300 di~~~~~S~~~e~e~~---~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 300 DIERLEASLVEEREKH---KAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 5554443333333322 233344455566666666666666544 4556666666665
No 124
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.20 E-value=55 Score=34.65 Aligned_cols=146 Identities=18% Similarity=0.280 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 590 EDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERER 669 (921)
Q Consensus 590 EdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREr 669 (921)
=-.|++++.+|+.++++...-|. +|+++. .-...+-.-+++-+..|-+-|..-..+.+....+=|
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk------------~Lk~lq---~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENK------------TLKQLQ---KRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888887776653 455543 334455566777777777777777777777766666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002440 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK----ERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 670 e~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~----Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~ 745 (921)
...++...+..++...+.++-..+.++..|..-.+. +| .++...+..+...+...+.++..|+-.++-...-|
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eR---eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAER---EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 666666666666666677666666666665543332 22 22334455555555555666666666665555555
Q ss_pred HHHHHHHH
Q 002440 746 KQELQEAL 753 (921)
Q Consensus 746 ~q~l~e~~ 753 (921)
.+++.-..
T Consensus 156 ~rql~~e~ 163 (194)
T PF15619_consen 156 RRQLASEK 163 (194)
T ss_pred HHHHHHHH
Confidence 55444333
No 125
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.49 E-value=76 Score=35.71 Aligned_cols=73 Identities=21% Similarity=0.379 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh----hhhHHHHHHHHHHhhHhhHHHHHHHHHH-HHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALL----KEKDEIINQVMAEGEELSKKQAAQEAQI-RKLRAQIRELE 479 (921)
Q Consensus 407 eRIdALErKLQ~L~KERDaLRre~ak~s~aaa~L----aEKDEqIa~LMEEGEKLSKkQlq~e~iI-KKLRakikE~E 479 (921)
.++..+++++..+.+++|.++.+..+...+-.+| +|=.-+...|++|...+++.+-..+..+ -|+...|.+..
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq 120 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQ 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888889999998888877655544432 5555556666666666666655444433 33444444333
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.48 E-value=69 Score=35.21 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=6.2
Q ss_pred HHHhHHHHHHHHHHHHH
Q 002440 677 QTLSRINVLEAQISCLR 693 (921)
Q Consensus 677 ~lksri~~LEsQls~lR 693 (921)
.++.++..++..+..+|
T Consensus 56 ~le~qv~~~e~ei~~~r 72 (239)
T COG1579 56 DLENQVSQLESEIQEIR 72 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.34 E-value=95 Score=38.85 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 664 SEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 664 A~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
..+.||++..++..+..++..+...+..++........+++
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457888888888887777777766666655555444444
No 128
>PTZ00121 MAEBL; Provisional
Probab=83.14 E-value=1.9e+02 Score=39.25 Aligned_cols=301 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHH
Q 002440 472 RAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETI-EKHQVELGEQKDYYTNALAAAKEAEE---LAEARAN 547 (921)
Q Consensus 472 RakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~l-Ek~qkEL~a~k~~~~~~L~aAKe~a~---~AEarA~ 547 (921)
|..-.-.++....=..+.+.+........|+.+++.+.-..+. +..++.-++....+++....++..++ +.+++..
T Consensus 1099 ~~e~~r~~et~r~ee~r~~ee~~~r~e~arr~eeARrae~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~ 1178 (2084)
T PTZ00121 1099 KAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178 (2084)
T ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHH
Q 002440 548 NEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLR 627 (921)
Q Consensus 548 ~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLR 627 (921)
.+++...+.+..+...+.+..+..-.+=|....|..+.+++.|++.|.| .+++.++++.+.+|+.-.=-.=..--.|
T Consensus 1179 EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~E---E~RraEEaRK~aEEAkraEEeR~~EE~R 1255 (2084)
T PTZ00121 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---AVKKAEEAKKDAEEAKKAEEERNNEEIR 1255 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHH
Q 002440 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC---LRAEQTQLTKSLE 704 (921)
Q Consensus 628 QIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~---lR~E~~qL~~qLE 704 (921)
++|..+-.-.++.+.-+..| .+|-++....+.+...-+....+....--.+...-...... +|.+-......-+
T Consensus 1256 k~Eear~a~~A~r~aa~k~E---e~RrAee~~k~Ee~r~a~~~kk~ee~kkaee~~kk~eea~kAee~~kkae~~~kka~ 1332 (2084)
T PTZ00121 1256 KFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332 (2084)
T ss_pred HHHHHHHHHHHHHhHhhhhH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-Hhhh
Q 002440 705 KERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKTARVDLE-RRAS 778 (921)
Q Consensus 705 ~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~EK~~r~e~E-r~k~ 778 (921)
..+.++....-...+++.++......+..-++..+--+.+-...-..+...+..-+...--+-+.+...+ +++.
T Consensus 1333 ~~~k~~e~~kk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~kk~~ee~kk~~~~kk~~e~~~kka 1407 (2084)
T PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407 (2084)
T ss_pred HHHhhHHHHHhHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhH
No 129
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.07 E-value=98 Score=37.48 Aligned_cols=98 Identities=19% Similarity=0.345 Sum_probs=72.8
Q ss_pred HHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHH
Q 002440 663 ASEERERSVNE----RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEI 738 (921)
Q Consensus 663 eA~eREre~~E----rl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel 738 (921)
+...||.-+.. |+..+..++...++....+..|-..|...|........ ...++.....+++++|+++|
T Consensus 406 E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~-------~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 406 EEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKE-------SLEEELKEANQNISRLQDEL 478 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33455654443 78888888888888888888888888877775432222 23345556677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 739 KELRRKHKQELQEALMHRELLQQEIEREK 767 (921)
Q Consensus 739 ~~l~~k~~q~l~e~~~~~~llq~qlE~EK 767 (921)
.+-+.-|+.+|.-.-.+.-.+..+|...+
T Consensus 479 ~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 479 ETTRRNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888875443
No 130
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.72 E-value=1.1e+02 Score=38.68 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 002440 398 LETLREEYHQRVAT------LERKVYALTKER 423 (921)
Q Consensus 398 l~~LkeEyteRIdA------LErKLQ~L~KER 423 (921)
++.|++||-+||++ |-.|+..|..+-
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 78899999999997 778887775444
No 131
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.38 E-value=1.3e+02 Score=36.90 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------
Q 002440 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER---QRA------ 710 (921)
Q Consensus 640 senWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er---~r~------ 710 (921)
..-|+....-|...+..+......-...=...-.++..+..++..+...+...-....+|...++.-- +|.
T Consensus 414 ~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RI 493 (594)
T PF05667_consen 414 AQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRI 493 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 33466666666555555544433211111111223334444444444444443333344443333211 110
Q ss_pred HHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 711 AENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEA 752 (921)
Q Consensus 711 ~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~ 752 (921)
-+.--.+...+++...--...+.|+.+|..+.+++.+.+.-.
T Consensus 494 lEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 494 LEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111112233445555556677888888888888888776544
No 132
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=82.17 E-value=15 Score=39.16 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 586 AVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (921)
Q Consensus 586 Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~ 665 (921)
..|-|..||.|+++|+.+|..++..++.-........+.+=||.|.| |.=-+.++....
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL---------------------L~YK~~ql~~~~ 152 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL---------------------LDYKERQLRELE 152 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH---------------------HHHHHHHHHhhh
Confidence 35677889999999999998888877766333445556666777776 222222222221
Q ss_pred -------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002440 666 -------ERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (921)
Q Consensus 666 -------eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~ 700 (921)
..=+.+.+.+..+..+|..||.=|..-.+++.+|+
T Consensus 153 ~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 153 EGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12256677888888888888888877777776654
No 133
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.88 E-value=1.4e+02 Score=36.70 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=60.2
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHH
Q 002440 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEI 446 (921)
Q Consensus 367 sks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEq 446 (921)
..+.+|+.|...|+.|-..|....... .-++.|++.|. +|-.=..|++..-..-. .++..+..+|..+-.-
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~--~~~eslre~~~-~L~~D~nK~~~y~~~~~------~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDP--GKEESLREKKA-RLQDDVNKFQAYVSQMK------SKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHH-HHHhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 457789999999999998888555533 33444554332 22222334432222111 1233445566666666
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002440 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (921)
Q Consensus 447 Ia~LMEEGEKLSKkQlq~e~iIKKLRakikE~Ee 480 (921)
|...-+|-++|.+..-.+.++|.+-+--..+.++
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6666677777777777777776665544444333
No 134
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.72 E-value=1.8e+02 Score=38.05 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCccchHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ--VPESTRPLLRQ 628 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSss--v~eATrPLLRQ 628 (921)
.+..++.+++..+.++...-. -|.++|.-++..++..+..-..+-.. +.+-+.||++=
T Consensus 853 ~~~~e~~e~~k~~~~~~~~~t----kl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~g 912 (1141)
T KOG0018|consen 853 KKEDEINEVKKILRRLVKELT----KLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSG 912 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCC
Confidence 456778888888887776554 46788888888888887766666555 77888888853
No 135
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.24 E-value=1.2e+02 Score=34.84 Aligned_cols=107 Identities=24% Similarity=0.289 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHH
Q 002440 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAI 632 (921)
Q Consensus 554 Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSss-v~eATrPLLRQIEtL 632 (921)
|..-+.+.+++...|..+|.+||.+|. ++.++|--|..++...+......... .++--..|++|+|.+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~-----------E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~ 138 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLN-----------EAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKL 138 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH
Confidence 445556666777788899999998884 56788888888887777766655554 446677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 633 QETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERL 675 (921)
Q Consensus 633 Qaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl 675 (921)
+.++.. |+.==+++++=..++-.++|+...+=--+|.++
T Consensus 139 ~~q~~q----Le~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 139 REQIEQ----LERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887754 333333444444555555555554444444433
No 136
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.15 E-value=1.4e+02 Score=35.66 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 002440 656 EAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE---KERQRAA 711 (921)
Q Consensus 656 eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE---~Er~r~~ 711 (921)
+...++......||++.-....++.++-.|+..++.+|...++|...-+ .+++|..
T Consensus 280 e~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~s 338 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSS 338 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3344555566677777777888889999999999999998888865444 4555544
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.04 E-value=27 Score=36.17 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=43.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002440 677 QTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 677 ~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~ 745 (921)
....+|..++..++.++.+...+...|.....-......++.+.+.++..++.+++.|+.+-..|=.+.
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555666666665555554444456777788888877777777777777776665554
No 138
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.98 E-value=1.6e+02 Score=36.32 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQASERRCEELVTQVPEST---RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSV 671 (921)
Q Consensus 595 ~EIsdLeqRLEeAEaRaEELSssv~eAT---rPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~ 671 (921)
.-|++|..++..++.+..+++..-++.. +-|-+||+.|+.++... +..=+..+..+.+.+..++..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e----------~~~~~~~~~~~~~~a~~~~~~L 357 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE----------LQKITKSLLMQADAAQARESQL 357 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777644332 33456777777765432 1111233344555666666666
Q ss_pred HHHHHHHHhHHH
Q 002440 672 NERLSQTLSRIN 683 (921)
Q Consensus 672 ~Erl~~lksri~ 683 (921)
..++..++.++.
T Consensus 358 ~~~l~~~~~~~~ 369 (754)
T TIGR01005 358 VSDVNQLKAASA 369 (754)
T ss_pred HHHHHHHHHHHH
Confidence 655555544443
No 139
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.80 E-value=80 Score=32.16 Aligned_cols=123 Identities=23% Similarity=0.262 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHhhh--cChHHHHHHHHHHH---HHHHHHHHH
Q 002440 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMM-NENEHLKAVIEDLKRK--TNDAELETLREEYH---QRVATLERK 415 (921)
Q Consensus 342 ~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~-e~NdqLk~eie~lk~k--s~eael~~LkeEyt---eRIdALErK 415 (921)
.++++++-....+...+.-...++..+..-.--|+ ..+++|+.++..+..+ ....+|..|+.-|. +-|.-.-.|
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766655555555443333333 4566676666666654 23355555555443 333444445
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHH
Q 002440 416 VYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (921)
Q Consensus 416 LQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRak 474 (921)
+..+..+.. .....|..+++.+..+.++-..+-..-...+..+++||.+
T Consensus 86 l~~~~~~~~----------~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 86 LHFLSEELE----------RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544444 3344566677777777776666666666666666666664
No 140
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.71 E-value=1.6e+02 Score=35.45 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-NDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 342 ~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks-~eael~~LkeEyteRIdALErKLQ 417 (921)
.-+..++.+++..-..+....++++.+..+...+..+.+-|+.+++++..-. ...+.+.|..+| .|+...++-..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~-~~L~n~e~i~~ 229 (563)
T TIGR00634 154 AGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQ-QRLSNLEKLRE 229 (563)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHH-HHHhCHHHHHH
Confidence 3345677888888888888888888888888899999999999999888843 345555666655 45555554443
No 141
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.51 E-value=45 Score=37.64 Aligned_cols=94 Identities=29% Similarity=0.481 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KE 422 (921)
-+..|+..+.++|.-+-.|-..-.-+--+++.|+=+.|-|++.++++.. .+..++.+|-+.+.++|+- .+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE-----~~~~~~re~~eK~~elEr~----K~~ 148 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE-----TLAQLQREYREKIRELERQ----KRA 148 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----HHH
Confidence 5556688888888888777222222233777788888888888876654 4567788887777665542 333
Q ss_pred HHHHHHHhhhhhHHHHHhhhhHHHHH
Q 002440 423 RDTLRREQNKKSDAAALLKEKDEIIN 448 (921)
Q Consensus 423 RDaLRre~ak~s~aaa~LaEKDEqIa 448 (921)
.|.|+.+. ..+.+.|+++|+.|.
T Consensus 149 ~d~L~~e~---~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 149 HDSLREEL---DELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444333 355667888888884
No 142
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.64 E-value=1.4e+02 Score=34.25 Aligned_cols=108 Identities=23% Similarity=0.325 Sum_probs=60.6
Q ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhhhhHHHH
Q 002440 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRR-E---QNKKSDAAA 438 (921)
Q Consensus 363 rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRr-e---~ak~s~aaa 438 (921)
|+|+||..-+--|..+.++-+.+-+.++... +...+|-.+|.++...+..+.+..-. . .......+.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMA---------EqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~ 72 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMA---------EQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQ 72 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHH
Confidence 5788888888888766666655544444321 22223444555555433322220000 0 002344556
Q ss_pred HhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002440 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (921)
Q Consensus 439 ~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~E 479 (921)
.|.+=-++...|-.|++.|=.+-.....-||=||.++....
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 77777777777777777776666666666666666666543
No 143
>PRK11519 tyrosine kinase; Provisional
Probab=77.15 E-value=1.2e+02 Score=37.62 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTE 583 (921)
Q Consensus 568 L~~qI~DLRekLeRae 583 (921)
|..++.+++.+|+.++
T Consensus 272 L~~ql~~l~~~L~~aE 287 (719)
T PRK11519 272 LAQQLPEVRSRLDVAE 287 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 144
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.86 E-value=1.3e+02 Score=33.54 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=43.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheeeeeec
Q 002440 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMFR 919 (921)
Q Consensus 857 SqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~~~~~~~~~~~~~~~ 919 (921)
..|+++=++-..++-++..+-...+-|.++|-.|..+++++-..+-..+ -+|..|+||-|
T Consensus 179 ~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R---e~iF~dvll~r 238 (258)
T PF15397_consen 179 PALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR---EVIFADVLLRR 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---HHhhHHHhcCC
Confidence 3455555666778888888888888888999999988887766654222 35667777755
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.76 E-value=29 Score=37.05 Aligned_cols=30 Identities=7% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 627 RQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (921)
Q Consensus 627 RQIEtLQaq~a~asenWe~iE~sL~~RL~e 656 (921)
+||..|++.++.....|...-..|..+++.
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~ 129 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ 129 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 566666666666666666444444444443
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.72 E-value=43 Score=37.61 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~ 420 (921)
..++..+..+++.|+..-... ..++..|+.++++|..++..+.... ..+......|......++..+....
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l-------~~eL~~LE~e~~~l~~el~~le~e~--~~l~~eE~~~~~~~n~~~~~l~~~~ 112 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEEL-------LQELEELEKEREELDQELEELEEEL--EELDEEEEEYWREYNELQLELIEFQ 112 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444432 3344455555555555555555543 3344444566666677777776677
Q ss_pred HHHHHHHHHhh
Q 002440 421 KERDTLRREQN 431 (921)
Q Consensus 421 KERDaLRre~a 431 (921)
.+++.+..++.
T Consensus 113 ~e~~sl~~q~~ 123 (314)
T PF04111_consen 113 EERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766655543
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.34 E-value=1.4e+02 Score=33.81 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002440 567 MLVQALEELRQTLSRTEQQAVF--REDMLRRDIEDLQRRYQASERRCEELVTQV 618 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~--rEdeLR~EIsdLeqRLEeAEaRaEELSssv 618 (921)
.+.+.|.+|+..|..+...-.. .=.+|..+|..+.....+...+..+++.-+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877733222 223567777777777777777777777654
No 148
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.94 E-value=2e+02 Score=35.69 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 002440 623 RPLLRQIEAIQETTAR 638 (921)
Q Consensus 623 rPLLRQIEtLQaq~a~ 638 (921)
.-++.||..|++|++.
T Consensus 307 ~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 307 KAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666555555443
No 149
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=75.78 E-value=1.4e+02 Score=33.33 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=7.9
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 002440 371 EIAKMMNENEHLKAVIED 388 (921)
Q Consensus 371 eiA~L~e~NdqLk~eie~ 388 (921)
+++.|+.+-++|.+.|..
T Consensus 82 ~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 150
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.47 E-value=69 Score=38.74 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 002440 667 RERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK 746 (921)
Q Consensus 667 REre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~ 746 (921)
+.|+.|.++..+...|..+-.+++...-++..|.++|-....+..-.+-+-....+=.......-++++.+++++++||.
T Consensus 206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555554433333322222222222222234456688888999988887
Q ss_pred HHHHHHHH
Q 002440 747 QELQEALM 754 (921)
Q Consensus 747 q~l~e~~~ 754 (921)
..++.+-.
T Consensus 286 E~m~~~~E 293 (596)
T KOG4360|consen 286 ECMQMLHE 293 (596)
T ss_pred HHHHHHHH
Confidence 76555443
No 151
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.11 E-value=1.7e+02 Score=34.06 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 748 ELQEALMHRELLQQEI 763 (921)
Q Consensus 748 ~l~e~~~~~~llq~ql 763 (921)
++.+++.++..++.++
T Consensus 292 ~l~~~~~~l~~~~~~l 307 (457)
T TIGR01000 292 EITDLNQKLLELESKI 307 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.67 E-value=42 Score=30.54 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 369 s~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ 417 (921)
-.+|.+|.+.|..|..++..|+... .-+..-+..+..||++|=.|+.
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en--~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEEN--EQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555444444444444432 2222335556677777766553
No 153
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=73.43 E-value=2.8e+02 Score=35.72 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 587 VFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (921)
Q Consensus 587 a~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~ 665 (921)
++.=.+|-.|-.+|+.||+-.+-+.+=+--.-----.||++ ..++.+.....+.|+..|+. |+..+..+++.+.
T Consensus 669 ~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e--~~~~~~~~~d~e~~e~~Ek~---Ri~~~~ae~e~~v 742 (988)
T KOG2072|consen 669 ARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIE--KAYDERQEEDRELYEAREKQ---RIEAAIAERESAV 742 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHH--HHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33445677888999999998877665554443333468876 45777778888999999875 5666666554443
No 154
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.39 E-value=2.8e+02 Score=35.80 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHHH
Q 002440 386 IEDLKRKTNDAELETLREEYHQRVAT 411 (921)
Q Consensus 386 ie~lk~ks~eael~~LkeEyteRIdA 411 (921)
|..|-.--....|+=+++.|..--..
T Consensus 209 lfkLHs~vp~dtLeghRdRf~~qf~r 234 (980)
T KOG0980|consen 209 LFKLHSQVPPDTLEGHRDRFHTQFER 234 (980)
T ss_pred HHHHHcCCCHHHhhhHHHHHHHHHHH
Confidence 34444433445566667766654443
No 155
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.25 E-value=2.1e+02 Score=34.25 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Q 002440 570 QALEELRQTLSRTEQQAVFREDMLRR--DIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQET 635 (921)
Q Consensus 570 ~qI~DLRekLeRaee~Aa~rEdeLR~--EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq 635 (921)
..+.+|...|...+.....+...++. .+..|..-|.++. .-+..+-+...+||.+++.+|..-
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~---~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALK---SALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcCCCCHHHHHHHHHHh
Confidence 35666777776666666665554432 2233333333332 223333222269999999999765
No 156
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=72.89 E-value=3e+02 Score=35.85 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSL 703 (921)
Q Consensus 670 e~~Erl~~lksri~~LEsQls~lR~E~~qL~~qL 703 (921)
.+...+..+..++..+..++..+......+...+
T Consensus 721 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 754 (1047)
T PRK10246 721 QVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQF 754 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555444444444333
No 157
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.45 E-value=2.7e+02 Score=35.14 Aligned_cols=112 Identities=24% Similarity=0.383 Sum_probs=64.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhc--ChHHHHHHHHHHH-HHH-------------HHHHHHHHHHHHHHHHHHHHhh-
Q 002440 369 ADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEYH-QRV-------------ATLERKVYALTKERDTLRREQN- 431 (921)
Q Consensus 369 s~eiA~L~e~NdqLk~eie~lk~ks--~eael~~LkeEyt-eRI-------------dALErKLQ~L~KERDaLRre~a- 431 (921)
.++.+..+.+-|.|+.++-..+..- ...-|..|+. |+ +-+ ..|-..++.|.++||+|.....
T Consensus 189 ~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~-YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~EL 267 (739)
T PF07111_consen 189 AKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRK-YVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAEL 267 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666654433321 1133555554 33 111 3455667888899998755322
Q ss_pred ---hhhHH-----------------------------HHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002440 432 ---KKSDA-----------------------------AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (921)
Q Consensus 432 ---k~s~a-----------------------------aa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~E 479 (921)
+...+ ...|.==-++.-.||- .|.-+++.|+..+++||.++++++
T Consensus 268 LqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmV---QLkaQeleh~~~~~qL~~qVAsLQ 344 (739)
T PF07111_consen 268 LQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMV---QLKAQELEHRDSVKQLRGQVASLQ 344 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhhHHHHHHHHHHHHH
Confidence 00010 1122221233334443 577889999999999999999999
Q ss_pred HHHHH
Q 002440 480 EEKKG 484 (921)
Q Consensus 480 ee~~~ 484 (921)
+++..
T Consensus 345 eev~s 349 (739)
T PF07111_consen 345 EEVAS 349 (739)
T ss_pred HHHHH
Confidence 97644
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.21 E-value=2.3e+02 Score=34.15 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002440 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRA 694 (921)
Q Consensus 649 sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~ 694 (921)
.+..+|.++.-.+.++...=+...+.+.-.-.++..++.++..++.
T Consensus 270 ~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 270 ELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444433334445555555555444
No 159
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=71.62 E-value=79 Score=32.84 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHh
Q 002440 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG 729 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~ 729 (921)
|..=|+++.+.......+=..++..+..+...+......+..++.+...|...+..-.....+........+-+.....-
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666666666666666666666666666666677777777777666655554333333333333333344444444
Q ss_pred HHHHHHHHHHHHHHH
Q 002440 730 RANQLEEEIKELRRK 744 (921)
Q Consensus 730 r~~qLEeel~~l~~k 744 (921)
.++.+++.+..++..
T Consensus 159 ~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.62 E-value=1.2e+02 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 400 TLREEYHQRVATLERKVYALTKERD 424 (921)
Q Consensus 400 ~LkeEyteRIdALErKLQ~L~KERD 424 (921)
.....+.+|++.++..+..+.++..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777766666655
No 161
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.11 E-value=1.5e+02 Score=31.58 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002440 678 TLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAK 721 (921)
Q Consensus 678 lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aak 721 (921)
++.++..++.++..++....++...++..+.+..+.+..+..-+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555544444444433333
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.97 E-value=3.4e+02 Score=35.75 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 576 RQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQ 655 (921)
Q Consensus 576 RekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~ 655 (921)
+..|.-.+...+...+.|+++ ..|..+.+.|.-.+-.++ .-+.+-+..++....+-..+...+...+.
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~----~~~~~elE~r~k~l~~sv--------er~~~~~~~L~~~i~s~~~~~~e~~~d~~ 447 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHE----LERRAELEARIKQLKESV--------ERLDKRRNKLAAKITSLSRSYEELKHDLD 447 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 334444444444444443332 334445555555544443 12222233344555555666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002440 656 EAEAKAAASEERERSVNERLSQTLSRINV 684 (921)
Q Consensus 656 eaEk~~~eA~eREre~~Erl~~lksri~~ 684 (921)
.++.....+.+.+-..|.+|.....++..
T Consensus 448 ~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 448 SLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 77777777777777777766555444433
No 163
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=70.54 E-value=2.4e+02 Score=33.87 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=34.8
Q ss_pred HHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 709 RAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALM 754 (921)
Q Consensus 709 r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~ 754 (921)
|+.+..+....|++.+...+..+..+..++..|+.||+.++...++
T Consensus 435 rl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 435 RLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566677778777888889999999999999988866653
No 164
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.46 E-value=71 Score=34.22 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhhhc-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRKT-----------------------NDAELETLREEYHQRVATLERKVYAL 419 (921)
Q Consensus 363 rq~qsks~eiA~L~e~NdqLk~eie~lk~ks-----------------------~eael~~LkeEyteRIdALErKLQ~L 419 (921)
|++|-..-+|..|.+.|..|++++.+|+.-. +..-+..--..|.++|..||.|.+.|
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888887777641 01112222345778888888888888
Q ss_pred HHHHHHHH
Q 002440 420 TKERDTLR 427 (921)
Q Consensus 420 ~KERDaLR 427 (921)
++|-..||
T Consensus 128 ~rEN~eLK 135 (195)
T PF10226_consen 128 IRENLELK 135 (195)
T ss_pred HHhHHHHH
Confidence 88877654
No 165
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.39 E-value=3e+02 Score=34.77 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=15.5
Q ss_pred HhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 002440 376 MNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (921)
Q Consensus 376 ~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALEr 414 (921)
++.+..|+.....++. ..+++..|+..+.-=.+.++.
T Consensus 275 ~e~~~~l~~~~~~~k~--t~~~~~~lr~~~~s~~~~~~~ 311 (698)
T KOG0978|consen 275 QEHEKLLKEYERELKD--TESDNLKLRKQHSSAADSLES 311 (698)
T ss_pred HHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHhhccc
Confidence 4444445543333333 224444555444433333333
No 166
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.35 E-value=1.9e+02 Score=32.60 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSs 616 (921)
.+...-..|+.+|.---++...||..+-.-+....-..+-+.+|.+....
T Consensus 132 k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 132 KLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555566666555555444444445555444433
No 167
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.23 E-value=78 Score=37.07 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV 646 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~i 646 (921)
.+..++.+++....+.+.........+..++.-+.+.|++-+-|.+-|-.-+-|.|.=-..-|.+|...
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqe----------- 284 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQE----------- 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455677777777777777777777778899999999999999998877766666666555566665544
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHH
Q 002440 647 ERSLNLRLQEAEAKAA-ASEERERSVNERLSQTLSRINVLE 686 (921)
Q Consensus 647 E~sL~~RL~eaEk~~~-eA~eREre~~Erl~~lksri~~LE 686 (921)
|+..+.+++ ..-+|=|++.|-+...+.||.-+|
T Consensus 285 -------La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 285 -------LASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred -------HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555555554 345678899999999999999998
No 168
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=69.71 E-value=3.1e+02 Score=34.67 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhcCCccchHHH---HHHHHH
Q 002440 566 TMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASE----------RRCEELVTQVPESTRPLL---RQIEAI 632 (921)
Q Consensus 566 e~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAE----------aRaEELSssv~eATrPLL---RQIEtL 632 (921)
..+...|..|+.-|.-..+++..-|+.|+.=.-+|+.|--..+ .+.++|.--....+ +|| +|++..
T Consensus 352 ~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki 430 (786)
T PF05483_consen 352 TELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKI 430 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3577889999999999999999999999888888877654333 33455544444444 343 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002440 633 QETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRIN 683 (921)
Q Consensus 633 Qaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~ 683 (921)
-..+-....-.-++=.+.-..+.+++..+..+...+.........++..+.
T Consensus 431 ~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 431 AEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELE 481 (786)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 332222222222222233334566667777777777776666555554444
No 169
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=69.51 E-value=1.2e+02 Score=32.77 Aligned_cols=51 Identities=33% Similarity=0.472 Sum_probs=30.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhh------------hhHHHHHhhhhHHHHHHHHHHhhHhhHH
Q 002440 410 ATLERKV-YALTKERDTLRREQNK------------KSDAAALLKEKDEIINQVMAEGEELSKK 460 (921)
Q Consensus 410 dALErKL-Q~L~KERDaLRre~ak------------~s~aaa~LaEKDEqIa~LMEEGEKLSKk 460 (921)
..+|++| -.|-+|.+.||.+... ...+...|+||+++|=.|-.+=-|+--+
T Consensus 23 E~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqk 86 (205)
T PF12240_consen 23 EQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQK 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 3456666666665431 1223457888888887777666666544
No 170
>PF13514 AAA_27: AAA domain
Probab=69.47 E-value=3.5e+02 Score=35.28 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002440 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHV 896 (921)
Q Consensus 857 SqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee 896 (921)
..++....++..++.+|..++.....+.+.+..|...+..
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4567777788888888888888888888888888777643
No 171
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.13 E-value=2.5e+02 Score=33.39 Aligned_cols=178 Identities=24% Similarity=0.288 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 002440 460 KQAAQEAQIRKLRAQIRE------------LEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDY 527 (921)
Q Consensus 460 kQlq~e~iIKKLRakikE------------~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~lEk~qkEL~a~k~~ 527 (921)
=|.+|.--+-|||....- .+.-.+.-+..++.++.+..++...-++..+.+.+.+...+.+|..+...
T Consensus 357 LQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQ 436 (593)
T KOG4807|consen 357 LQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQ 436 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788764221 11111111123344444444444455566667777788888888888888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHH--HHHHHHHHHHHHHHHH---------H--------
Q 002440 528 YTN-ALAAAKEAEELAEARANNEARAELESRLRE---AG--ERE--TMLVQALEELRQTLSR---------T-------- 582 (921)
Q Consensus 528 ~~~-~L~aAKe~a~~AEarA~~Ea~~~Le~~lkE---ae--ErE--e~L~~qI~DLRekLeR---------a-------- 582 (921)
|.. =|.-| ++ +++.++-+.+|.+=+.+ +- .++ .+|..+|.-||-=|.- +
T Consensus 437 YSQKCLEna----hL--aqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayEL 510 (593)
T KOG4807|consen 437 YSQKCLENA----HL--AQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYEL 510 (593)
T ss_pred HHHHHHHHH----HH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhH
Confidence 763 12111 11 11111112222221111 11 122 2566777777754321 1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCccchHHHHHHHHHHHHHHHHHHHH
Q 002440 583 EQQAVFRE---DMLRRDIEDLQRRYQASERRCEELV-------TQVPESTRPLLRQIEAIQETTARRAEAW 643 (921)
Q Consensus 583 ee~Aa~rE---deLR~EIsdLeqRLEeAEaRaEELS-------ssv~eATrPLLRQIEtLQaq~a~asenW 643 (921)
+==-+.+| .+|+.||+-|..-|+.|-.-.-=.| .-.+-+-++-=+-|+.|-.++..+.++.
T Consensus 511 EVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteAL 581 (593)
T KOG4807|consen 511 EVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEAL 581 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHh
Confidence 11112222 4789999999988887754322111 1122333444456777777776666553
No 172
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.10 E-value=3.7e+02 Score=35.38 Aligned_cols=140 Identities=28% Similarity=0.382 Sum_probs=96.7
Q ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHH------HHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 002440 339 DSVCELEKLKREMKM---METALQGAARQ------AQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRV 409 (921)
Q Consensus 339 ds~~elekL~~ei~~---le~~l~~a~rq------~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRI 409 (921)
|-..||+||+++|.- .+.+|..=.|. .+.++..|-+|..+.+++..++..+...- ......+.....+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~--~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY--MNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 445689999988753 34444433232 55667777777777777777777777654 22334567778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002440 410 ATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKL 489 (921)
Q Consensus 410 dALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~Kl 489 (921)
+.++++|+.-+++...++.+.. .+.+.|++++++|..+-.=-.+|... -.+||..+.+....+..|-.|+
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~---~~~~~l~~~e~ii~~~~~se~~l~~~-------a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQ---QAKATLKEEEEIISQQEKSEEKLVDR-------ATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987776653 45567999999998865544444433 5667777777777776666544
Q ss_pred H
Q 002440 490 Q 490 (921)
Q Consensus 490 E 490 (921)
.
T Consensus 556 d 556 (1041)
T KOG0243|consen 556 D 556 (1041)
T ss_pred h
Confidence 4
No 173
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=68.93 E-value=52 Score=29.97 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002440 622 TRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (921)
Q Consensus 622 TrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~ 691 (921)
-..||-=+|.||..|..+...|+.-=..| +.......+++..++++...+..+++.|..++..
T Consensus 5 E~qLl~ale~Lq~~y~~q~~~Wq~sy~~L-------q~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 5 EKQLLSALEELQQSYEKQQQEWQSSYADL-------QHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688889999999999999999765555 4444555555666776666666666666665544
No 174
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=68.40 E-value=3.3e+02 Score=34.60 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 595 RDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (921)
Q Consensus 595 ~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~ 665 (921)
.|+..+.+|++.-+.-++-|+. |.| |-||-....+..+-+.+|+ |.+-++.+.+++++..
T Consensus 177 aeL~rarqreemneeh~~rlsd-----tvd-----ErlqlhlkermaAle~kn~-L~~e~~s~kk~l~~~~ 236 (916)
T KOG0249|consen 177 AELQRARQREKMNEEHNKRLSD-----TVD-----ERLQLHLKERMAALEDKNR-LEQELESVKKQLEEMR 236 (916)
T ss_pred HHHHHHHHHHHhhhhhcccccc-----ccH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444444455444443443333 444 7888777777777777664 4444555555554443
No 175
>PRK12704 phosphodiesterase; Provisional
Probab=68.34 E-value=2.8e+02 Score=33.60 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 002440 881 DSLAEELVKMTAQV 894 (921)
Q Consensus 881 ~~LaEELVkLT~q~ 894 (921)
..|..++++|...+
T Consensus 313 ~~~~~~i~~ll~~l 326 (520)
T PRK12704 313 HGLHPELIKLLGRL 326 (520)
T ss_pred chhHHHHHHHHHHh
Confidence 34455555554443
No 176
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.27 E-value=1.7e+02 Score=31.14 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (921)
Q Consensus 674 rl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r 709 (921)
++..++.++..+..++...|.....+...|+..+..
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544433
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.11 E-value=2.2e+02 Score=32.34 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHH
Q 002440 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEA----QISCLRAEQTQLTK 701 (921)
Q Consensus 626 LRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEs----Qls~lR~E~~qL~~ 701 (921)
+..++.|-..+...-+.-+.=...|...+.-+..-.....++--.+..++..++.....++. .+..+|.++..+..
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ 218 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 002440 702 SLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ-------ELQEALMHRELLQQE 762 (921)
Q Consensus 702 qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q-------~l~e~~~~~~llq~q 762 (921)
.++..++.....+.++............+...++.+|.+++..+.+ ++..++.....|+..
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
No 178
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.22 E-value=3e+02 Score=33.67 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 646 VERSLNLRLQEAEAKAAASEERERSV--NERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 646 iE~sL~~RL~eaEk~~~eA~eREre~--~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
-=..|..++..++.+++...++=+.+ .+.+..+..++..++..+..+..+...+..+++
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666665533221 234444444455555555544444444444444
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.18 E-value=2e+02 Score=31.46 Aligned_cols=53 Identities=34% Similarity=0.418 Sum_probs=28.2
Q ss_pred HHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002440 435 DAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQ 490 (921)
Q Consensus 435 ~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE 490 (921)
..+..|.+|= ..+-+|.+.|.++....+..+.+|+.+.....++...|..++.
T Consensus 33 ~~a~~Leek~---k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 33 ETAEELEEKL---KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543 3444588888888888888899998887777777777765433
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.02 E-value=68 Score=39.44 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 408 RVATLERKVYALTKERDTLRRE 429 (921)
Q Consensus 408 RIdALErKLQ~L~KERDaLRre 429 (921)
||..|+++|..-.+.++.|++.
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444445544443
No 181
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.00 E-value=3.4e+02 Score=34.23 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 002440 667 RERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK 746 (921)
Q Consensus 667 REre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~ 746 (921)
....+..++..+..++..+......+-.+...++..++.-+..+.+..+.+.-.+.....-+.++.+++.....++..
T Consensus 518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~e-- 595 (698)
T KOG0978|consen 518 SVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELE-- 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333334444444444455555555566677777777777666666665555555555555566666666666554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Q 002440 747 QELQEALMHRELLQQEIEREKTARVDLERRAS 778 (921)
Q Consensus 747 q~l~e~~~~~~llq~qlE~EK~~r~e~Er~k~ 778 (921)
|...+..+.-++.++++.+ -.+++-+.
T Consensus 596 --le~~~~k~~rleEE~e~L~---~kle~~k~ 622 (698)
T KOG0978|consen 596 --LEIEKFKRKRLEEELERLK---RKLERLKK 622 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHH---HHHHHhcc
Confidence 4444444455666665554 24555554
No 182
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.37 E-value=2.4e+02 Score=32.15 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 374 KMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (921)
Q Consensus 374 ~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERD 424 (921)
.+...-.+|+..+.+++.+- -++...-..|.+..+.|=.|+.-+...+.
T Consensus 10 E~e~K~~~lk~~~~e~~ekR--~El~~~~~~~~ekRdeln~kvrE~~e~~~ 58 (294)
T COG1340 10 ELELKRKQLKEEIEELKEKR--DELRKEASELAEKRDELNAKVRELREKAQ 58 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333335555555444433 22333334444555555555544433333
No 183
>PRK10698 phage shock protein PspA; Provisional
Probab=66.12 E-value=1.9e+02 Score=31.03 Aligned_cols=84 Identities=17% Similarity=0.351 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (921)
Q Consensus 570 ~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSss--v~eATrPLLRQIEtLQaq~a~asenWe~iE 647 (921)
.++..|+..+...... -+.|+..+..|+.+++.++.+-..|... +..++..+=+++-.+.. ..+...++.+|
T Consensus 99 ~~~~~l~~~~~~~~~~----~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~--~~a~~~f~rmE 172 (222)
T PRK10698 99 DLIATLEHEVTLVDET----LARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKL--DEAMARFESFE 172 (222)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHH
Confidence 3444444444333332 2456667777777777777777777665 44455555444443322 23344555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 648 RSLNLRLQEAEAKAAA 663 (921)
Q Consensus 648 ~sL~~RL~eaEk~~~e 663 (921)
.. +...+.+..+
T Consensus 173 ~k----i~~~Ea~aea 184 (222)
T PRK10698 173 RR----IDQMEAEAES 184 (222)
T ss_pred HH----HHHHHHHHhH
Confidence 44 4445544443
No 184
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.37 E-value=1.7e+02 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLR 693 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR 693 (921)
+...+...+.+|..|+.-+..++
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 33345555555555555555444
No 185
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.21 E-value=1.5e+02 Score=29.33 Aligned_cols=62 Identities=16% Similarity=0.384 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 347 LKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (921)
Q Consensus 347 L~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERD 424 (921)
+...+.-|+..|++. --.+-.|..++|+|+..+..|+.. .+.+++||..|++++-.+-+..+
T Consensus 14 l~n~La~Le~slE~~-------K~S~~eL~kqkd~L~~~l~~L~~q---------~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 14 LQNRLASLERSLEDE-------KTSQGELAKQKDQLRNALQSLQAQ---------NASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HhhHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777765 334456677777777776666553 46678999999999988877776
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.16 E-value=83 Score=35.43 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 338 ADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 338 ~ds~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ 417 (921)
.+...++.+|.++...+.+.|...+.+-..+.+++..|+.+-..|..+-...-..- ..+.--.-+|.+..+.+...+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~--n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREY--NELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999999999998877777777788888877777766655444433 2233334566788889999999
Q ss_pred HHHHHHHHHHHH
Q 002440 418 ALTKERDTLRRE 429 (921)
Q Consensus 418 ~L~KERDaLRre 429 (921)
++....+.||+-
T Consensus 124 ~~~~~L~~L~kt 135 (314)
T PF04111_consen 124 YASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHCHHT-
T ss_pred HHHHHHHHHHhc
Confidence 999999988763
No 187
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.11 E-value=1.9e+02 Score=30.67 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=10.9
Q ss_pred hHHHHHhhhhHHHHHHH
Q 002440 434 SDAAALLKEKDEIINQV 450 (921)
Q Consensus 434 s~aaa~LaEKDEqIa~L 450 (921)
.++...|+++|..|.-+
T Consensus 85 r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 85 RELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777643
No 188
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.61 E-value=52 Score=36.18 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002440 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (921)
Q Consensus 669 re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~ 745 (921)
.++++.+..++.++..+......|+.++..|...++. .+++....++.+.+|++.++.|.++|
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee--------------~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE--------------VQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 3566666667766666666666666666666555554 44444455667777777777666554
No 189
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.52 E-value=3e+02 Score=32.70 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 629 IEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNE 673 (921)
Q Consensus 629 IEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~E 673 (921)
||.=--.++.+.++-+..+.-|..|-+.++....++..|..-+..
T Consensus 198 ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 198 IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555555444444444444433333
No 190
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=64.36 E-value=4e+02 Score=34.03 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH----------HHHHHHHHHHHhHHHHHHHHHH
Q 002440 632 IQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE-----------RE----------RSVNERLSQTLSRINVLEAQIS 690 (921)
Q Consensus 632 LQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~e-----------RE----------re~~Erl~~lksri~~LEsQls 690 (921)
++......+.-|+.+-..|-.+|.++.++++.+.- |+ ..+...+..+..|+..++.+++
T Consensus 72 i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~ 151 (769)
T PF05911_consen 72 IHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENS 151 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555556666777777777777777666643322 11 1122256677889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002440 691 CLRAEQTQLTKSLEK 705 (921)
Q Consensus 691 ~lR~E~~qL~~qLE~ 705 (921)
.|+.|+--++..|+-
T Consensus 152 ~Lkye~~~~~kelei 166 (769)
T PF05911_consen 152 SLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888886
No 191
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=63.32 E-value=2.9e+02 Score=32.14 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCc--cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 593 LRRDIEDLQRRYQASERRCEELVTQ--VPE--STRPL-LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (921)
Q Consensus 593 LR~EIsdLeqRLEeAEaRaEELSss--v~e--ATrPL-LRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~ 662 (921)
|-..+.+|..+++.++.+.+.-... ..+ -...| .++.-++.+++...+..-...++.|.........-..
T Consensus 200 l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~ 274 (458)
T COG3206 200 LDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGRE 274 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444455555555555555443333 222 22333 3566666666666666666666666555544444443
No 192
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.22 E-value=75 Score=35.48 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=54.6
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 002440 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (921)
Q Consensus 335 ~~s~ds~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALEr 414 (921)
.++-|.|.-+.+|+.||..|..-|----..+..|-++|..|- .. .+.. ..+..-+-+|++.|++
T Consensus 218 ~~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLK-------ad--------~e~~-~~~ek~Hke~v~qL~~ 281 (305)
T KOG3990|consen 218 RDPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLK-------AD--------KEYQ-KELEKKHKERVQQLQK 281 (305)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccC-------cc--------hhHH-HHHHHHHHHHHHHHHH
Confidence 345589999999999999999887654444555555555553 11 0011 2234455689999999
Q ss_pred HHHHHHHHHHHHHH
Q 002440 415 KVYALTKERDTLRR 428 (921)
Q Consensus 415 KLQ~L~KERDaLRr 428 (921)
|...+.|+.+.||+
T Consensus 282 k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 282 KKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.83 E-value=64 Score=32.63 Aligned_cols=68 Identities=28% Similarity=0.371 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (921)
Q Consensus 339 ds~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~ 418 (921)
.+..++..+..+|..|...+. .|...+..|..++..|...-+..++...-..+.+.|..++.||..
T Consensus 69 ~s~eel~~ld~ei~~L~~el~--------------~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELA--------------ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777666666655554 566667777777777777655566666666666667777777765
Q ss_pred HH
Q 002440 419 LT 420 (921)
Q Consensus 419 L~ 420 (921)
|.
T Consensus 135 l~ 136 (169)
T PF07106_consen 135 LR 136 (169)
T ss_pred HH
Confidence 54
No 194
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.11 E-value=2.2e+02 Score=30.25 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002440 472 RAQIRELEE 480 (921)
Q Consensus 472 RakikE~Ee 480 (921)
+.-|.+.+.
T Consensus 30 ~q~irem~~ 38 (219)
T TIGR02977 30 RLIIQEMED 38 (219)
T ss_pred HHHHHHHHH
Confidence 333333333
No 195
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.34 E-value=2e+02 Score=29.62 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 576 RQTLSRTEQQAVFREDMLRRDIEDL 600 (921)
Q Consensus 576 RekLeRaee~Aa~rEdeLR~EIsdL 600 (921)
+..+++..++|.. +||.++.+|
T Consensus 106 ~~~Ie~Ek~~Al~---elr~eva~L 127 (154)
T PRK06568 106 IQLIQNQKSTASK---ELQDEFCDE 127 (154)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 3334444444433 555555554
No 196
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=60.92 E-value=3.7e+02 Score=32.56 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhhh-----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHhhhhH
Q 002440 378 ENEHLKAVIEDLKRK-----TNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA--------AALLKEKD 444 (921)
Q Consensus 378 ~NdqLk~eie~lk~k-----s~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~a--------aa~LaEKD 444 (921)
....|+.-|++|... -..-+++..-.-..+=++..++-||....|.++|.-+.++..+. .+.+.+|+
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 334444444444442 12233333334444566777888888888888887776654322 34788999
Q ss_pred HHHHHHHHHhhHhhHHHHHH
Q 002440 445 EIINQVMAEGEELSKKQAAQ 464 (921)
Q Consensus 445 EqIa~LMEEGEKLSKkQlq~ 464 (921)
.-|.+-++=...||+|+...
T Consensus 443 ksvsqclEmdk~LskKeeev 462 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEV 462 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999987765
No 197
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=60.25 E-value=3.3e+02 Score=31.72 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 002440 728 EGRANQLEEEIKELRRKHKQEL 749 (921)
Q Consensus 728 E~r~~qLEeel~~l~~k~~q~l 749 (921)
..+.++|+-++...+.-|.+-|
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL 393 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLL 393 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555554333
No 198
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.43 E-value=37 Score=32.91 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 349 ~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
..|..|+.+|..--.++..+...+..|.++|..|+-++..|+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555666666666666666666666665554
No 199
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.08 E-value=1.4e+02 Score=37.02 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 403 EEYHQRVATLERKVYALTKERDTLRREQNKKSD-AAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEE 481 (921)
Q Consensus 403 eEyteRIdALErKLQ~L~KERDaLRre~ak~s~-aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee 481 (921)
.-|..+|-+++.+++.|..|...|++....... ..++-.+.+.....+- .-....+..-.....|-+|+.++.+-.+.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888887766555432221 1222222222222221 11222333334555666666666666666
Q ss_pred HHHHHhHHHH
Q 002440 482 KKGLVTKLQV 491 (921)
Q Consensus 482 ~~~Lk~KlE~ 491 (921)
+..|+.++..
T Consensus 497 ve~L~~~l~~ 506 (652)
T COG2433 497 VEELERKLAE 506 (652)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 200
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.23 E-value=2.6e+02 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 572 LEELRQTLSRTEQQAVFREDMLRRDIEDL 600 (921)
Q Consensus 572 I~DLRekLeRaee~Aa~rEdeLR~EIsdL 600 (921)
+...+..+++..+.+.. .|+.++.+|
T Consensus 146 i~~A~~~Ie~Ek~~a~~---~Lk~ei~~l 171 (205)
T PRK06231 146 IFQARQEIEKERRELKE---QLQKESVEL 171 (205)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33344444444333322 444444443
No 201
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=57.06 E-value=56 Score=36.42 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 002440 652 LRLQEAEAKAAASEERE---RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQE 728 (921)
Q Consensus 652 ~RL~eaEk~~~eA~eRE---re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE 728 (921)
.||.+++.++.+.-+.| ..+.++...+..|+..+|+++..|.--...|.+.|+.= +-.|.++-+--.+..
T Consensus 186 ~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~g-------knaY~~~ieke~q~r 258 (311)
T PF04642_consen 186 DQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPG-------KNAYLAAIEKENQAR 258 (311)
T ss_pred cccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCC-------cchHHHHHhhHHHHH
Confidence 46888888888877554 56777899999999999999999998888888888753 334555544333333
Q ss_pred hHHHHHHHHHH
Q 002440 729 GRANQLEEEIK 739 (921)
Q Consensus 729 ~r~~qLEeel~ 739 (921)
..++.+++.|+
T Consensus 259 aeL~acEEkl~ 269 (311)
T PF04642_consen 259 AELNACEEKLK 269 (311)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 202
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=55.51 E-value=3.4e+02 Score=30.91 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhh
Q 002440 749 LQEALMHRELLQQEIEREKTARVDLERRASAE 780 (921)
Q Consensus 749 l~e~~~~~~llq~qlE~EK~~r~e~Er~k~~~ 780 (921)
|.-++..++.|++++-+=| .+.||.-...
T Consensus 104 l~s~Kkqie~Leqelkr~K---sELErsQ~~~ 132 (307)
T PF10481_consen 104 LNSCKKQIEKLEQELKRCK---SELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 4445555566666654443 3566554433
No 203
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=54.88 E-value=2e+02 Score=27.51 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=39.2
Q ss_pred ChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHH
Q 002440 394 NDAELETLR----EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450 (921)
Q Consensus 394 ~eael~~Lk----eEyteRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~L 450 (921)
.+.-|..|+ ..|-.||+.|+..+..+.+|.+.|+++. .....||.+.|+.|
T Consensus 32 HE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l------~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 32 HETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL------DTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence 345577888 6677889999999999999999888776 44566777777654
No 204
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.43 E-value=4.5e+02 Score=33.71 Aligned_cols=55 Identities=24% Similarity=0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 650 LNLRLQEAEAKAAASEERE-----RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~eRE-----re~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
|..||.-+.-++++-.+-+ -+.+-++..+++.--.|+.|+......+..|+..-+
T Consensus 399 LrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 399 LRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 4444444444444433333 122446666666666666666655554444443333
No 205
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=54.35 E-value=3.5e+02 Score=32.00 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=10.3
Q ss_pred HHhhcCCccchHHHHH
Q 002440 613 ELVTQVPESTRPLLRQ 628 (921)
Q Consensus 613 ELSssv~eATrPLLRQ 628 (921)
.+..++++..+|+.--
T Consensus 156 ~~~~~~~~~~~~~~~~ 171 (445)
T PRK13428 156 AMAPSTADVDYPLLAK 171 (445)
T ss_pred ccCCCchhhcCchhhh
Confidence 3444677778888743
No 206
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.14 E-value=4.5e+02 Score=31.35 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHH
Q 002440 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630 (921)
Q Consensus 551 ~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIE 630 (921)
+.-+..-.+.+...-..|...|.||+..++ .||.+ .++++| ||..+|++
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE-----------~LRkD--V~~Rgv------------------Rp~~~qle 249 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVE-----------DLRKD--VVQRGV------------------RPSPKQLE 249 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--HHHH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--HHHcCC------------------cCCHHHHH
Confidence 444445555555555677788888888774 34554 345666 88888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002440 631 AIQETTARRAEAWAAVERSL 650 (921)
Q Consensus 631 tLQaq~a~asenWe~iE~sL 650 (921)
+++..+..+...|..++..+
T Consensus 250 ~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 250 TVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777766554
No 207
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.12 E-value=41 Score=32.97 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 350 EMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 350 ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
.|..|+.++..--.++..+...++.|.++|..|+-++.+|++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555544444
No 208
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.67 E-value=6e+02 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHH
Q 002440 853 SAFESILRQKEGELASYMSRLA 874 (921)
Q Consensus 853 s~lQSqLKqREGEIaqLQ~el~ 874 (921)
..|+.-|---|.-||.||--|.
T Consensus 834 ~~f~~glaalda~iarlq~sl~ 855 (861)
T PF15254_consen 834 QDFRNGLAALDANIARLQRSLQ 855 (861)
T ss_pred HHHHhhHHHhhhhHHHHHHHHH
Confidence 4888888888888888886543
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.34 E-value=5.7e+02 Score=32.54 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCCCCCCCCCchhhhhhhch
Q 002440 5 SGKVSLGNFPDLAGAVNKFS 24 (921)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (921)
.+.+||+++||+...+.++.
T Consensus 60 ~~~~~l~~~~Di~~~l~r~~ 79 (782)
T PRK00409 60 KGLPPFEGVKDIDDALKRAE 79 (782)
T ss_pred cCCCCCCCCccHHHHHHHHh
Confidence 46788999999988877765
No 210
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.33 E-value=5e+02 Score=31.42 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 002440 731 ANQLEEEIK 739 (921)
Q Consensus 731 ~~qLEeel~ 739 (921)
+++.+.+.+
T Consensus 169 ~~~~~~~~~ 177 (514)
T TIGR03319 169 IKEIEEEAK 177 (514)
T ss_pred HHHHHHHHH
Confidence 444444443
No 211
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.99 E-value=6.2e+02 Score=32.40 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKER 423 (921)
Q Consensus 407 eRIdALErKLQ~L~KER 423 (921)
.||.++|..|-.+-+|-
T Consensus 70 ~ritt~e~rflnaqre~ 86 (916)
T KOG0249|consen 70 ERITTLEKRFLNAQRES 86 (916)
T ss_pred cccchHHHHHHhccCCC
Confidence 67888887776555554
No 212
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=51.85 E-value=2.7e+02 Score=28.06 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=8.3
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 002440 520 ELGEQKDYYTNALAAAKE 537 (921)
Q Consensus 520 EL~a~k~~~~~~L~aAKe 537 (921)
+.......|...|..|+.
T Consensus 71 ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 71 KANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445545544444
No 213
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.83 E-value=2.3e+02 Score=28.76 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAA 645 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~ 645 (921)
++|+..|..|...+..++.|.+.|.++....+. ..++.+...|.....-|-.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~---ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSP---EEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888887554443 4556666777777777754
No 214
>PRK00106 hypothetical protein; Provisional
Probab=51.64 E-value=5.4e+02 Score=31.56 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 002440 731 ANQLEEEIK 739 (921)
Q Consensus 731 ~~qLEeel~ 739 (921)
++..+.+.+
T Consensus 190 i~~~e~~a~ 198 (535)
T PRK00106 190 IREAEREVK 198 (535)
T ss_pred HHHHHHHHH
Confidence 445555544
No 215
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=51.60 E-value=7.3e+02 Score=33.10 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 650 LNLRLQEAEAKAAASEERERSVNERLS 676 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~eREre~~Erl~ 676 (921)
|.++...+...++...+.++.+++++.
T Consensus 284 l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 284 IASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
No 216
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.59 E-value=1.9e+02 Score=26.38 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQI 475 (921)
Q Consensus 407 eRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRaki 475 (921)
+-++.||.|++.+..-.+.|+.+......-...|. +....|..|-++|-..+-.....|+.|=.++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELK---EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777766666532221111222 4555566666666655555555554443333
No 217
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=51.53 E-value=2.6e+02 Score=27.87 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 002440 592 MLRRDIEDLQRRY 604 (921)
Q Consensus 592 eLR~EIsdLeqRL 604 (921)
.|+.++.+|-..+
T Consensus 122 ~l~~qv~~~~~~~ 134 (141)
T PRK08476 122 QLLSQMPEFKEAL 134 (141)
T ss_pred HHHHhHHHHHHHH
Confidence 4555555554443
No 218
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.42 E-value=5.5e+02 Score=31.55 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhH
Q 002440 435 DAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKV 496 (921)
Q Consensus 435 ~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~l 496 (921)
.....+.+-+..|..+..+-+.+..+...+.+.++.++.++.+++..+....+.+..+...+
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~L 267 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQL 267 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456666667777777777777777777777777777777777766666555444433333
No 219
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.17 E-value=1.4e+02 Score=34.62 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=10.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHhh
Q 002440 370 DEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 370 ~eiA~L~e~NdqLk~eie~lk~ 391 (921)
.-++.+.++|..|+.+++.+..
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555444443
No 220
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.16 E-value=4.1e+02 Score=30.07 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHH
Q 002440 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQ----ISCLRAEQTQL 699 (921)
Q Consensus 624 PLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQ----ls~lR~E~~qL 699 (921)
.++-....++..+..=++.-..||+-|-..|..++.+...+.-+---|+-.+..++.+...--.| .+.|+-.++++
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777788888999999999999888877776666666666666665544433 23455555555
Q ss_pred HHHHHHHHHHHHH
Q 002440 700 TKSLEKERQRAAE 712 (921)
Q Consensus 700 ~~qLE~Er~r~~~ 712 (921)
.+.-+..+.+..+
T Consensus 104 ~aikeql~kyiRe 116 (333)
T KOG1853|consen 104 HAIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444333
No 221
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=50.38 E-value=93 Score=29.52 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=49.4
Q ss_pred hhccccccccCCcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHH
Q 002440 326 QRLSSEANVSVSADSV--CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLRE 403 (921)
Q Consensus 326 ~~~~~~~~~~~s~ds~--~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~Lke 403 (921)
..|-....+..+.++- .+...|++||+.|..+++. .=++++-..+|-.|+.++-.++.-....+ ++
T Consensus 6 ~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~--------nPevtr~A~EN~rL~ee~rrl~~f~~~ge----rE 73 (86)
T PF12711_consen 6 KRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH--------NPEVTRFAMENIRLREELRRLQSFYVEGE----RE 73 (86)
T ss_pred HHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HH
Confidence 3333333443333433 3557899999999888884 56788888889999988888877443333 33
Q ss_pred HHHHHHHHHHHH
Q 002440 404 EYHQRVATLERK 415 (921)
Q Consensus 404 EyteRIdALErK 415 (921)
--.+-|+.|+..
T Consensus 74 ~l~~eis~L~~~ 85 (86)
T PF12711_consen 74 MLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHhh
Confidence 334556655543
No 222
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.24 E-value=1.7e+02 Score=35.20 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 667 RERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (921)
Q Consensus 667 REre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~ 705 (921)
-=|++.-++..++.++..+..+|..|+.|+.+|++....
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346667777778888888888888888888887654443
No 223
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.19 E-value=37 Score=29.45 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 364 QAQAKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 364 q~qsks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
++..+..+++.|..+|+.|+.++..|+.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677788888888877777733
No 224
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.05 E-value=3.2e+02 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002440 469 RKLRAQIRELEEEKKGLV 486 (921)
Q Consensus 469 KKLRakikE~Eee~~~Lk 486 (921)
+-|...|.+.++.+..++
T Consensus 26 ~~l~q~ird~e~~l~~a~ 43 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKAR 43 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555444444
No 225
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.68 E-value=1.2e+02 Score=28.46 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=7.0
Q ss_pred HHHHHHHHhhHhhHH
Q 002440 446 IINQVMAEGEELSKK 460 (921)
Q Consensus 446 qIa~LMEEGEKLSKk 460 (921)
-+..|+++|..|.++
T Consensus 68 ~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 68 DAEELKAEVKELKEE 82 (108)
T ss_dssp CTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555544443
No 226
>PRK10698 phage shock protein PspA; Provisional
Probab=49.59 E-value=3.7e+02 Score=29.00 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 553 ELESRLREAGERETMLVQALEELRQTLSR 581 (921)
Q Consensus 553 ~Le~~lkEaeErEe~L~~qI~DLRekLeR 581 (921)
.++..+.........|..++..|+.++..
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333455555555555533
No 227
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.58 E-value=4.3e+02 Score=29.79 Aligned_cols=144 Identities=17% Similarity=0.303 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEYHQRVATLERKVYALTK 421 (921)
Q Consensus 344 lekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks--~eael~~LkeEyteRIdALErKLQ~L~K 421 (921)
+.+-...+..++....+++-+++++-.+|-.++...+.++.+|+.++..- -..+|..+++--.+|=.-|...+..+-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666666666666666666666666555432 2233434433222222222222110000
Q ss_pred H------HHHH-HHH-----hhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002440 422 E------RDTL-RRE-----QNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (921)
Q Consensus 422 E------RDaL-Rre-----~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~ 487 (921)
- .|.+ -+. +.+..++...+.==--+|..+.+.-..|+.++......+.+|-+-..+++..+..|..
T Consensus 113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNS 190 (265)
T ss_pred cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0110 000 0011122222222224677788888888988888888888888888888888888775
No 228
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.31 E-value=3e+02 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=7.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 002440 678 TLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 678 lksri~~LEsQls~lR~E~~q 698 (921)
+..++..+...+..++.....
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQE 120 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 229
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=49.10 E-value=3.8e+02 Score=28.99 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002440 630 EAIQETTARRAEAWAAVE 647 (921)
Q Consensus 630 EtLQaq~a~asenWe~iE 647 (921)
|.+=..+..++..|..+|
T Consensus 87 E~~Y~~F~~Qt~~LA~~e 104 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVE 104 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555554
No 230
>PRK12704 phosphodiesterase; Provisional
Probab=48.17 E-value=5.8e+02 Score=30.95 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002440 731 ANQLEEEIK 739 (921)
Q Consensus 731 ~~qLEeel~ 739 (921)
+++.+.+.+
T Consensus 175 ~~~~~~~~~ 183 (520)
T PRK12704 175 IKEIEEEAK 183 (520)
T ss_pred HHHHHHHHH
Confidence 444544443
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.97 E-value=3.1e+02 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 676 SQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (921)
Q Consensus 676 ~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r 709 (921)
...+.++..|..++..++.....|...++..+..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777777777777777765433
No 232
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.61 E-value=1.6e+02 Score=26.65 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHhhHhhH
Q 002440 440 LKEKDEIINQVMAEGEELSK 459 (921)
Q Consensus 440 LaEKDEqIa~LMEEGEKLSK 459 (921)
|..+=..|..|++|-+.|-+
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 233
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.34 E-value=3.9e+02 Score=28.63 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQ----VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE 666 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSss----v~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~e 666 (921)
..|+.-|.+.=..+..+......+... .+....-=+.++|..-.+...+-..|+.-=..+..+|.........+..
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~ 120 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQ 120 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 345555555555555555555555332 2222333356777777777777777888777777888888887777777
Q ss_pred HHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHhHHhHHHHHH
Q 002440 667 RERSVNERLSQTLSRINVL---------EAQISCLRAEQTQLTKSLEKERQRAA--ENRQEYLAAKEEADTQEGRANQLE 735 (921)
Q Consensus 667 REre~~Erl~~lksri~~L---------EsQls~lR~E~~qL~~qLE~Er~r~~--~~rqe~~aakee~~~qE~r~~qLE 735 (921)
.=.++..++..+..+++.+ +++...+.+++..+..++..-..-+. ..++++..++.+. ..-++.+++
T Consensus 121 ~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl--~~~~~~~l~ 198 (240)
T PF12795_consen 121 QLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDL--LKARIQRLQ 198 (240)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7777777777777776664 66666677777777766665444443 2344444443333 333355665
Q ss_pred HHHHHHHH
Q 002440 736 EEIKELRR 743 (921)
Q Consensus 736 eel~~l~~ 743 (921)
..+..|+.
T Consensus 199 ~~l~~Lq~ 206 (240)
T PF12795_consen 199 QQLQALQN 206 (240)
T ss_pred HHHHHHHH
Confidence 55554433
No 234
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.04 E-value=6.7e+02 Score=31.32 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002440 404 EYHQRVATLERKVYALT 420 (921)
Q Consensus 404 EyteRIdALErKLQ~L~ 420 (921)
.+.+++..|+..+..+.
T Consensus 308 ~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 308 AVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666665555443
No 235
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.00 E-value=3.4e+02 Score=27.85 Aligned_cols=8 Identities=0% Similarity=0.306 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 002440 592 MLRRDIED 599 (921)
Q Consensus 592 eLR~EIsd 599 (921)
+|+.++.+
T Consensus 133 ~l~~ei~~ 140 (173)
T PRK13453 133 DINNQVSE 140 (173)
T ss_pred HHHHHHHH
Confidence 44444444
No 236
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.80 E-value=3.2e+02 Score=30.45 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 653 RLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 653 RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
++.++..++++...---++..++..+.+.++.....+..++.++++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333344444455555555555555554444444
No 237
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.73 E-value=5.9e+02 Score=32.37 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=11.2
Q ss_pred CCCCCCCCchhhhhhhc
Q 002440 7 KVSLGNFPDLAGAVNKF 23 (921)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (921)
.+||++++|+...+.++
T Consensus 59 ~~~l~~~~di~~~l~r~ 75 (771)
T TIGR01069 59 NVRFFGFEDIRELLKRA 75 (771)
T ss_pred cCCcCCCccHHHHHHHH
Confidence 45777888777755444
No 238
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=46.63 E-value=71 Score=30.23 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 624 PLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
+..+||+.|....+.=...-+.+|+.|..+-=.-+.+ +.+...+..++.++...|.++..||.|+..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R--------~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEAR--------RSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHH--------HHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 4578999999999999999999998886554333322 122355777888899999999999987654
No 239
>PLN02678 seryl-tRNA synthetase
Probab=46.37 E-value=98 Score=36.73 Aligned_cols=54 Identities=33% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhH
Q 002440 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 459 (921)
Q Consensus 406 teRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSK 459 (921)
+.+|-.+..+...+..+.+.||.+.+..+..-..++-..+.+..|++++..|.+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ 85 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKK 85 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 344555555555555666666555443332222222222334455555554443
No 240
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.98 E-value=7.9e+02 Score=31.86 Aligned_cols=30 Identities=33% Similarity=0.203 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDI 597 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EI 597 (921)
..+.-.+.|..++-.++-++..|++.+...
T Consensus 972 ~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 972 KAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555666666555544
No 241
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.36 E-value=2.7e+02 Score=28.01 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHH
Q 002440 337 SADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKV 416 (921)
Q Consensus 337 s~ds~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKL 416 (921)
+.++...+++|.+....++.+|.....++..+..++.++...+..- ...|..|+.++
T Consensus 15 ~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d-----------------------~~~L~~Le~~~ 71 (160)
T PF13094_consen 15 KREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERD-----------------------YEYLQELEKNA 71 (160)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 3467778999999999999999877555555444444444222211 24566677777
Q ss_pred HHHHHHHHHH
Q 002440 417 YALTKERDTL 426 (921)
Q Consensus 417 Q~L~KERDaL 426 (921)
+.+.+++...
T Consensus 72 ~~~~~e~~~~ 81 (160)
T PF13094_consen 72 KALEREREEE 81 (160)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 242
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.05 E-value=2.5e+02 Score=30.76 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.0
Q ss_pred HHHHHhhHhhHH
Q 002440 449 QVMAEGEELSKK 460 (921)
Q Consensus 449 ~LMEEGEKLSKk 460 (921)
..|++++.|.++
T Consensus 131 ~~~~~~~~lk~~ 142 (216)
T KOG1962|consen 131 KAMKENEALKKQ 142 (216)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 243
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.01 E-value=6.5e+02 Score=30.56 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r 709 (921)
+..++..++.++.-+..++..+|-+..-|...+..-+.+
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444444444444444444444444433333
No 244
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.82 E-value=7.7e+02 Score=31.36 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHhhh-cChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEH-LKAVIEDLKRK-TNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~Ndq-Lk~eie~lk~k-s~eael~~LkeEyteRIdALErKLQ 417 (921)
.....|+..++..+..++.++..-+|. ++-+..+.+.+ ++.+.+.+..+ .+-+++..|+.-|-.+++.++.++.
T Consensus 100 ~dr~~~~~~~l~~~q~a~~~~e~~lq~---q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~ 175 (716)
T KOG4593|consen 100 VDRKHKLLTRLRQLQEALKGQEEKLQE---QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVM 175 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777666665433333 34344433333 33333333333 2346677788888888888887775
No 245
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.63 E-value=2.3e+02 Score=33.33 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 729 GRANQLEEEIKELRRKHKQELQEALMHRELLQ 760 (921)
Q Consensus 729 ~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq 760 (921)
-|..+||+++..+.+-|..++..+|+++...+
T Consensus 258 ~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 258 YRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35557888888888888888877777665444
No 246
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=44.16 E-value=3.5e+02 Score=27.22 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 002440 592 MLRRDIEDL 600 (921)
Q Consensus 592 eLR~EIsdL 600 (921)
+|+.++.+|
T Consensus 123 ~L~~~i~~l 131 (164)
T PRK14473 123 ELKSQIADL 131 (164)
T ss_pred HHHHHHHHH
Confidence 445554443
No 247
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.05 E-value=1.1e+02 Score=35.70 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002440 406 HQRVATLERKVYALTKERDTLRREQNK 432 (921)
Q Consensus 406 teRIdALErKLQ~L~KERDaLRre~ak 432 (921)
+.+|-+|..+...+..+.+.||++.+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~ 53 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNA 53 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666555443
No 248
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=44.03 E-value=3.5e+02 Score=31.28 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHhhHHHHHHHHHHHhhh
Q 002440 341 VCELEKLKREMKMMETALQGA------ARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a------~rq~qsks~eiA~L~e~NdqLk~eie~lk~k 392 (921)
.+|++||-..|.+||.++.+. .|-.|+ ++.+|.++--.|-.++.+.+--
T Consensus 34 V~EVEKLsqTi~ELEEaiLagGaaaNavrdYqr---q~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 34 VLEVEKLSQTIRELEEAILAGGAAANAVRDYQR---QVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Confidence 479999999999999988753 244443 6777777777787777776653
No 249
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.98 E-value=1.9e+02 Score=34.35 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 642 AWAAVERSLNLRLQEAEAKAAASEERERS 670 (921)
Q Consensus 642 nWe~iE~sL~~RL~eaEk~~~eA~eREre 670 (921)
.|..+-..+..++.++..++.++.++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444433333333
No 250
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.98 E-value=4.9e+02 Score=28.55 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 626 LRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
..+.+-+-..+....++|+..+.-| .+..++.+....--..-.+.|-.+...|+.||.-+..++.+..+
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L----~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCL----EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777778888877554 77777777777766677777888888888888888876666555
No 251
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.22 E-value=3.7e+02 Score=27.00 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------H---HHHHHHHHHHHHh
Q 002440 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE-------------------R---ERSVNERLSQTLS 680 (921)
Q Consensus 623 rPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~e-------------------R---Ere~~Erl~~lks 680 (921)
.-++.|.-.||.++..-.-.-+.+|..| .+.++.+.+... + -..++++...+.-
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL----~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ 84 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQL----KEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777666 445554444333 1 2345557777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 681 RINVLEAQISCLRAEQTQLTKSLEK 705 (921)
Q Consensus 681 ri~~LEsQls~lR~E~~qL~~qLE~ 705 (921)
||..|+.|-..++.+...|+..|..
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776666554
No 252
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=42.18 E-value=3.4e+02 Score=26.45 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 646 VERSLNLRLQEAEAKA 661 (921)
Q Consensus 646 iE~sL~~RL~eaEk~~ 661 (921)
+...|..++.++...+
T Consensus 149 ~~~~i~~~~~~l~~~l 164 (202)
T PF01442_consen 149 LEAKISERLEELRESL 164 (202)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 253
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=42.17 E-value=3.9e+02 Score=27.26 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 499 IKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQT 578 (921)
Q Consensus 499 ~kr~~~a~EK~lqE~lEk~qkEL~a~k~~~~~~L~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeErEe~L~~qI~DLRek 578 (921)
+..+.....+.+ +..++.+.+.......|...|..|+..+...-..+..++....+..+.++... +...+...+..
T Consensus 45 l~~R~~~I~~~l-~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~e---a~~~~~~a~~~ 120 (173)
T PRK13460 45 LDERASGVQNDI-NKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNE---VKAQKDQAVKE 120 (173)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 579 LSRTEQQAVFREDMLRRDIEDL 600 (921)
Q Consensus 579 LeRaee~Aa~rEdeLR~EIsdL 600 (921)
+.+..+++.. +|+.++.+|
T Consensus 121 ie~e~~~a~~---el~~ei~~l 139 (173)
T PRK13460 121 IELAKGKALS---QLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHH---HHHHHHHHH
No 254
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=41.99 E-value=4.8e+02 Score=28.19 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 002440 525 KDYYTNALAAAK 536 (921)
Q Consensus 525 k~~~~~~L~aAK 536 (921)
...|...|..|+
T Consensus 59 ~~e~e~~l~~a~ 70 (246)
T TIGR03321 59 RREYEEKNEELD 70 (246)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 255
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.39 E-value=4.9e+02 Score=28.08 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 642 AWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 642 nWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
.|..+......|++....+......+=+.++.++..++..+..++.++...+.+...|..+++
T Consensus 32 ~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 32 QWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555444444455555555555555555555555555555544444
No 256
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.11 E-value=1e+03 Score=31.73 Aligned_cols=253 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HhHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 491 VEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYT---NALAAAKEAEELAEARANNEARAELESRLREAGERETM 567 (921)
Q Consensus 491 ~e~~~le~~kr~~~a~EK~lqE~lEk~qkEL~a~k~~~~---~~L~aAKe~a~~AEarA~~Ea~~~Le~~lkEaeErEe~ 567 (921)
..+..+..+.....+..+.+ +.++..-+.|.++..-|. .+|.-..-..++.+.+...---..+-..++...+.-..
T Consensus 674 ~~l~~l~~~~~~~~~~q~el-~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e 752 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKEL-EALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEE 752 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (921)
Q Consensus 568 L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE 647 (921)
+.++|.+.+..+....+.-...|-.++.--.+=++|| .-|-.-|..+-......+..|++-|
T Consensus 753 ~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rl------------------kdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 753 SEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRL------------------KDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHH
Q 002440 648 RSLNLRLQEAEAKAAASEERERSVNE---RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEY---LAAK 721 (921)
Q Consensus 648 ~sL~~RL~eaEk~~~eA~eREre~~E---rl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~---~aak 721 (921)
.....=.-+.+.--.+..-.++.+.. .+..+++.+..++..+....-.+..+++.|..+..+....-.++ ..-.
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 722 EEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQE 762 (921)
Q Consensus 722 ee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~q 762 (921)
+-|-.......---..+.+--.+|+++-..++.+.+.+..+
T Consensus 895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
No 257
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.96 E-value=6.6e+02 Score=31.96 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002440 636 TARRAEAWAAVERSLNLRLQ 655 (921)
Q Consensus 636 ~a~asenWe~iE~sL~~RL~ 655 (921)
|+..-+.--|+-..+..|..
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~ 508 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAK 508 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHH
Confidence 55555555566566644433
No 258
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=40.38 E-value=4.1e+02 Score=27.00 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=34.0
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 002440 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEEN 494 (921)
Q Consensus 447 Ia~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~ 494 (921)
...|-.+.+-+-.....++.+++||..+++.-+-++..|+.++.....
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445678899999999999999999999987765443
No 259
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=40.36 E-value=7.2e+02 Score=29.79 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=16.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002440 454 GEELSKKQAAQEAQIRKLRAQIRELE 479 (921)
Q Consensus 454 GEKLSKkQlq~e~iIKKLRakikE~E 479 (921)
-+.|=+...++..|.+-||+.-.|++
T Consensus 66 ~~~lr~gVfqlddi~~qlr~~rtel~ 91 (499)
T COG4372 66 NRNLRSGVFQLDDIRPQLRALRTELG 91 (499)
T ss_pred hhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34566667777777777776555443
No 260
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.34 E-value=6.8e+02 Score=29.45 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=60.1
Q ss_pred HHHHHHhhHHHHHHHHHHHhh-----hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHhhh
Q 002440 371 EIAKMMNENEHLKAVIEDLKR-----KTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAA---ALLKE 442 (921)
Q Consensus 371 eiA~L~e~NdqLk~eie~lk~-----ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~aa---a~LaE 442 (921)
+-..|.-+|++|+.++.+++. +..-.-++.|--...++=.-||-+|+.+.+|+- + +...+. ..|+|
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~----E--keeesq~LnrELaE 173 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG----E--KEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh----H--hHHHHHHHHHHHHH
Confidence 445778888888888877665 222233444444444555566677766666663 1 111222 23444
Q ss_pred hHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (921)
Q Consensus 443 KDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk 486 (921)
-=..++.|-+|=+. +--++.+.|+|-.+.|..++...+.|.
T Consensus 174 ~layqq~L~~eyQa---tf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 174 ALAYQQELNDEYQA---TFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHHHhhc---ccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 44455556555432 233455677777777777777666654
No 261
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.99 E-value=6.4e+02 Score=30.97 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 002440 399 ETLREEYHQRVATLERKVYALTKERDTLRREQNK-KSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRE 477 (921)
Q Consensus 399 ~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak-~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE 477 (921)
.-++.-|..||+.|=.++|.+--....+..+-.. ..-....-++|+-....|.+-+++++.=|-++.++-+-.-.||.-
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~ 491 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3468899999999888776442222222221110 001122344666666777778888888888888888888888888
Q ss_pred HHHHHHHHHhHHHHhHHhHHHHH
Q 002440 478 LEEEKKGLVTKLQVEENKVESIK 500 (921)
Q Consensus 478 ~Eee~~~Lk~KlE~e~~~le~~k 500 (921)
+-+-+-.|+.++......++.+|
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777666666665
No 262
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.84 E-value=7.4e+02 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 002440 860 RQKEGELASYMSRLASMESIRDSLAEELV 888 (921)
Q Consensus 860 KqREGEIaqLQ~el~~lE~tR~~LaEELV 888 (921)
-.+.|++..---++..|.-.=..++..-+
T Consensus 533 ~l~~gdL~~A~~~~~~L~g~~~~~a~dW~ 561 (582)
T PF09731_consen 533 YLERGDLDKAARELNQLKGWARKLAADWL 561 (582)
T ss_pred HHHCCCHHHHHHHHHhCchHHHHHHHHHH
Confidence 44566666665566655554444444443
No 263
>PF15294 Leu_zip: Leucine zipper
Probab=39.52 E-value=6.2e+02 Score=28.77 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHH
Q 002440 368 KADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEII 447 (921)
Q Consensus 368 ks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqI 447 (921)
+.++|.+|+++|+.|+ .|+-.+|...-...+|+..|..+++..-......+-|..-+
T Consensus 130 l~kEi~rLq~EN~kLk-----------------------~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~ 186 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLK-----------------------ERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLS 186 (278)
T ss_pred HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHHH------HHHHHHH
Q 002440 448 NQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETI------EKHQVEL 521 (921)
Q Consensus 448 a~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~l------Ek~qkEL 521 (921)
. .++.|+.=+.++...=-.|-..+.+.+...+.|+..+......+=.........++.+.... .+|+.-|
T Consensus 187 ~----~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~l 262 (278)
T PF15294_consen 187 F----KAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEIL 262 (278)
T ss_pred c----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHH
Q ss_pred hhhHHHHH
Q 002440 522 GEQKDYYT 529 (921)
Q Consensus 522 ~a~k~~~~ 529 (921)
......++
T Consensus 263 tkKn~QiK 270 (278)
T PF15294_consen 263 TKKNEQIK 270 (278)
T ss_pred HhccHHHH
No 264
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=39.12 E-value=1.7e+02 Score=31.61 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 347 LKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 347 L~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ 417 (921)
|+-.|..++..|... .-.|-+.|+.+.+....+.....+++.+-. .-+--|-.||+.||++|-
T Consensus 87 l~~~i~~le~~lvd~---~~~kd~~i~~~~~~l~~~~~r~~el~~~r~-----~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 87 LQSRISNLEKQLVDQ---MIEKDREIRTLQDELLSLELRNKELQNERE-----RERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Confidence 445566666666322 234566777887777777766666665442 224578899999999985
No 265
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.69 E-value=2.6e+02 Score=26.15 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=22.0
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 002440 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (921)
Q Consensus 367 sks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ 417 (921)
....+++.|..+|+.|...+-.+.. .+++.|. +..|..||..|.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~G----edL~~Ls---~~eL~~LE~~Le 59 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMG----EDLESLS---LKELQQLEQQLE 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----ccccccc---hHHHHHHHHhhh
Confidence 3344555555555555544444443 2233332 355666666664
No 266
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.61 E-value=5.6e+02 Score=27.98 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSL 703 (921)
Q Consensus 674 rl~~lksri~~LEsQls~lR~E~~qL~~qL 703 (921)
++..+...+..+..-+.+|......+...+
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~ 139 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKE 139 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhH
Confidence 344444444444444444444333333333
No 267
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=38.52 E-value=5.6e+02 Score=28.00 Aligned_cols=66 Identities=32% Similarity=0.410 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhc--ChHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGA-ARQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEYH 406 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a-~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks--~eael~~LkeEyt 406 (921)
-..|++|++.|..+|..|..+ ++--+.|..-.........-=+..++-|.+|. +..|++..+.=|.
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr 99 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYR 99 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHH
Confidence 458999999999999999987 23333333333344444444455567777775 5677766555443
No 268
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.32 E-value=6.1e+02 Score=30.49 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (921)
Q Consensus 671 ~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE 704 (921)
++.++..-..+.+.+-+|+..+|++-..+.+.+.
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~ 51 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQ 51 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666666666655544
No 269
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.31 E-value=77 Score=28.23 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 363 RQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 363 rq~qsks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
++++....++..++.+|++|+.++..|.+
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455566777888888888888877765
No 270
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.01 E-value=8.2e+02 Score=29.75 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 374 KMMNENEHLKAVIEDLKR-KTNDAELETLREEYHQRVATLERKVYALTKER 423 (921)
Q Consensus 374 ~L~e~NdqLk~eie~lk~-ks~eael~~LkeEyteRIdALErKLQ~L~KER 423 (921)
.|..++..+..-+.++.. +....++...+.--.+|+..++.|+.-+.+|.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333 23334444444444444555555554444444
No 271
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.94 E-value=5.3e+02 Score=32.77 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 635 TTARRAEAWAAVERSLNLRLQE 656 (921)
Q Consensus 635 q~a~asenWe~iE~sL~~RL~e 656 (921)
.|+..-+.--|+-..+..|...
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~ 504 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKT 504 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHH
Confidence 3555555555666666554443
No 272
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.87 E-value=1.7e+02 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002440 407 QRVATLERKVYALTKERD 424 (921)
Q Consensus 407 eRIdALErKLQ~L~KERD 424 (921)
.++..|-..+..|.+|.+
T Consensus 47 ~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 47 EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 273
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.83 E-value=76 Score=30.52 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=17.4
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 367 AKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 367 sks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
.+..++++|..+|+.|+.++..|+.
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3355666777777777777777765
No 274
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.81 E-value=5.7e+02 Score=27.90 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002440 566 TMLVQALEELRQTLSRTEQQAV---FREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (921)
Q Consensus 566 e~L~~qI~DLRekLeRaee~Aa---~rEdeLR~EIsdLeqRLEeAEaRaEELSss 617 (921)
..|.+-|.|.+..|..+.+..+ .+.-.|..++..++.+.+..+.+++.+-+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~ 81 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA 81 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4555666666666655554333 223344455555666666666666655544
No 275
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.75 E-value=1.4e+02 Score=29.46 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Q 002440 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390 (921)
Q Consensus 344 lekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk 390 (921)
+..|-..|..|-..+..-..+++.+..+++.|.-+|+.|+..+..+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666566777889999999999999999999873
No 276
>PRK00106 hypothetical protein; Provisional
Probab=36.98 E-value=8.8e+02 Score=29.82 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 650 LNLRLQEAEAKAAASEERERSVNERLS 676 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~eREre~~Erl~ 676 (921)
|..|...++.+......++..+..+..
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kek 132 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQ 132 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 277
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.80 E-value=9.7e+02 Score=30.23 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 002440 681 RINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ 747 (921)
Q Consensus 681 ri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q 747 (921)
.+..++.-....+.++..|++.|+..+++....+....-...++...-..+..+..+|..+...|..
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ 294 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVE 294 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333444444455555555444444444443333333333333333334444444444433
No 278
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.76 E-value=6.6e+02 Score=28.32 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002440 643 WAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKE 722 (921)
Q Consensus 643 We~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aake 722 (921)
-..+|+.|..-+.++..++. .++..+.++.+....|++++...++|+.+.+..|+.-. .-|=.
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~-------~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq----~vRPA------ 222 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQ-------QTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ----SVRPA------ 222 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcChH------
Confidence 34466666555555554432 23334445555555555555555555555544444311 11100
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 723 EADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIER 765 (921)
Q Consensus 723 e~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~ 765 (921)
=+++ -..||.+|..+=+.|-..+. .+..|+++|+.
T Consensus 223 fmdE----yEklE~EL~~lY~~Y~~kfR----Nl~yLe~qle~ 257 (267)
T PF10234_consen 223 FMDE----YEKLEEELQKLYEIYVEKFR----NLDYLEHQLEE 257 (267)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHH
Confidence 0112 23677778777666644444 44688888754
No 279
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=36.46 E-value=4.6e+02 Score=26.39 Aligned_cols=7 Identities=14% Similarity=-0.073 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002440 527 YYTNALA 533 (921)
Q Consensus 527 ~~~~~L~ 533 (921)
.|...|.
T Consensus 64 e~e~~l~ 70 (164)
T PRK14471 64 DNERLLK 70 (164)
T ss_pred HHHHHHH
Confidence 3333333
No 280
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.35 E-value=3.8e+02 Score=25.37 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 550 ARAELESRLREAGERETMLVQALEELRQTLSRTEQQA----------VFREDMLRRDIEDLQRRYQASERRC 611 (921)
Q Consensus 550 a~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~A----------a~rEdeLR~EIsdLeqRLEeAEaRa 611 (921)
....|+.++..+-+-...|+.+|.+|+++=....+.. ...=..||.|...-+.||..+-.+-
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555556666666666543333321 1122356666666666666654443
No 281
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.04 E-value=5.3e+02 Score=26.99 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cchHHHHHHHHHHHHH
Q 002440 561 AGERETMLVQALEELRQTLSRTEQ---QAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE-STRPLLRQIEAIQETT 636 (921)
Q Consensus 561 aeErEe~L~~qI~DLRekLeRaee---~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~e-ATrPLLRQIEtLQaq~ 636 (921)
+++-+..|.+.|.|+...|.++.. ........|..++..++..+...+.+++.+-...-+ -=+..|..+..++.+.
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 333345666777777777666653 444556778888888888888888888887666543 3345555555444444
Q ss_pred HHHHHHH
Q 002440 637 ARRAEAW 643 (921)
Q Consensus 637 a~asenW 643 (921)
..-...|
T Consensus 101 ~~l~~~~ 107 (221)
T PF04012_consen 101 ERLEQQL 107 (221)
T ss_pred HHHHHHH
Confidence 4333333
No 282
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.97 E-value=5.2e+02 Score=26.87 Aligned_cols=112 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhh--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002440 358 LQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR--KTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSD 435 (921)
Q Consensus 358 l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~--ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~ 435 (921)
|+..+..-+.-.-++..|...|.+|..+...-+. +..+..+..+-+.|-+....|..++..|..+.-.|.....+.++
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 002440 436 AAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQI 475 (921)
Q Consensus 436 aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRaki 475 (921)
....|.|.+.++.. ++..-.-.+...|+++.-.+
T Consensus 118 q~~rlee~e~~l~~------e~~~l~er~~e~l~~~~e~v 151 (158)
T PF09744_consen 118 QSSRLEEREAELKK------EYNRLHERERELLRKLKEHV 151 (158)
T ss_pred hccccchhHHHHHH------HHHHHHHHHHHHHHHHHHHH
No 283
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.57 E-value=2.4e+02 Score=27.48 Aligned_cols=49 Identities=29% Similarity=0.470 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhh
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ 391 (921)
.|..|-..|..|-..+..-..++..+-.+++.|..+|+.|+..+..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666666666666677778899999999999999999988755
No 284
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.41 E-value=4.3e+02 Score=32.02 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcC------hHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTN------DAELETLREEYHQRVATLERKV 416 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~------eael~~LkeEyteRIdALErKL 416 (921)
.|--|.-++++|+..++ .|..+|+.|+.++++|+.... ...|.+.+.++.+.+..|...+
T Consensus 60 TlrTlva~~k~~r~~~~--------------~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLA--------------KLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred hHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566677777766666 445555555555555544321 1223344444454555544444
Q ss_pred HHHHHHHHHH
Q 002440 417 YALTKERDTL 426 (921)
Q Consensus 417 Q~L~KERDaL 426 (921)
+.+.-..+.|
T Consensus 126 ~~~~~~l~~l 135 (472)
T TIGR03752 126 QQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 285
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.35 E-value=3.6e+02 Score=33.05 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002440 626 LRQIEAIQETTARRAEAWAAVERSL--NLRLQEAEAKAAASEER------E-RSVNERLSQTLSRINVLEAQISCLRAEQ 696 (921)
Q Consensus 626 LRQIEtLQaq~a~asenWe~iE~sL--~~RL~eaEk~~~eA~eR------E-re~~Erl~~lksri~~LEsQls~lR~E~ 696 (921)
.+.++.++..|....+-|.+.-..| -..+.+.+.+..+.... + ..+.+++..++..+...-.++..++.++
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999998888 77888888888877774 1 1333345555555555555555544444
Q ss_pred HHHHHHHHH
Q 002440 697 TQLTKSLEK 705 (921)
Q Consensus 697 ~qL~~qLE~ 705 (921)
.....++..
T Consensus 243 ~~~~~~~~~ 251 (555)
T TIGR03545 243 QNDKKQLKA 251 (555)
T ss_pred HHhHHHHHH
Confidence 444444443
No 286
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=35.33 E-value=2.9e+02 Score=23.74 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 591 DMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAE 658 (921)
Q Consensus 591 deLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaE 658 (921)
..|..+|...+.++......++.|....+..+.-+-..+..|+ ..|+.+...+..|-..++
T Consensus 44 ~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~-------~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 44 KELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELN-------QRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCC
Confidence 3567889999999999999999996666666666666666665 467777777666655543
No 287
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.62 E-value=5.3e+02 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 734 LEEEIKELRRKHKQELQEALMH 755 (921)
Q Consensus 734 LEeel~~l~~k~~q~l~e~~~~ 755 (921)
++-.+.++..+...++..++.+
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444554455444433
No 288
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.02 E-value=1.1e+03 Score=30.22 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002440 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRI 904 (921)
Q Consensus 854 ~lQSqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l 904 (921)
.++.+|+--+.-|..|+.+|..+......+..+|..++..++..-.-.|.+
T Consensus 621 ~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 621 SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 556777777777888999999888888888888888866665444444433
No 289
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.40 E-value=5.4e+02 Score=28.28 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 731 ANQLEEEIKELRRKHKQELQEALMHRELLQQEIER 765 (921)
Q Consensus 731 ~~qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~ 765 (921)
+-.|..+.+++...|-+.+++. ..|++++++
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~----~~Lq~~i~~ 211 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEY----SKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHH----HHHHHHHhc
Confidence 3344445555444444444333 355555544
No 290
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=33.36 E-value=6.3e+02 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 002440 709 RAAENRQEYLAAKEEADTQEGRANQLEEEIK 739 (921)
Q Consensus 709 r~~~~rqe~~aakee~~~qE~r~~qLEeel~ 739 (921)
++..+..+|..........+..+..||+.|.
T Consensus 121 kLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 121 KLEKLEKEYLRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777766667777777777664
No 291
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.13 E-value=5.3e+02 Score=31.43 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 733 QLEEEIKELRRKHKQELQEALMHRELLQQEIEREK 767 (921)
Q Consensus 733 qLEeel~~l~~k~~q~l~e~~~~~~llq~qlE~EK 767 (921)
||.++++ +|..|.+.++..|+.+.-+|+.|+-+-
T Consensus 550 ql~~Erk-lR~~~qkr~kkEkk~k~k~qe~L~~~s 583 (641)
T KOG3915|consen 550 QLAMERK-LRAIVQKRLKKEKKAKRKLQEALEFES 583 (641)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4444443 456666667777777777777776664
No 292
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.02 E-value=2.2e+02 Score=33.30 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 002440 467 QIRKLRAQIRELEEEKKGLVTKLQV 491 (921)
Q Consensus 467 iIKKLRakikE~Eee~~~Lk~KlE~ 491 (921)
.+|.|+.+|+++++++..+..++..
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655544443
No 293
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.89 E-value=6.1e+02 Score=27.99 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 002440 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (921)
Q Consensus 335 ~~s~ds~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALEr 414 (921)
.++.+...++..|..++..++..+.- +.+...++...++|++....+=+.......+..+-..+.-=||.|++
T Consensus 60 ~~~~~~~~~~~~l~~el~~l~~e~~e-------lkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLer 132 (238)
T PRK14143 60 ETAADNAARLAQLEQELESLKQELEE-------LNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFER 132 (238)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44456666777777666665555442 23344456666666665554433333334455566666666777776
Q ss_pred HHHHH
Q 002440 415 KVYAL 419 (921)
Q Consensus 415 KLQ~L 419 (921)
-+..+
T Consensus 133 Al~~~ 137 (238)
T PRK14143 133 ARQQL 137 (238)
T ss_pred HHhcc
Confidence 66543
No 294
>PF14992 TMCO5: TMCO5 family
Probab=32.86 E-value=2.8e+02 Score=31.45 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002440 441 KEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (921)
Q Consensus 441 aEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Ee 480 (921)
+....+|+-++..+.--.--.-++-+-|+||+.+++-.++
T Consensus 126 ~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 126 ASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE 165 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666555544444445556666666665544443
No 295
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.84 E-value=6.7e+02 Score=27.20 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHH
Q 002440 374 KMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAE 453 (921)
Q Consensus 374 ~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEE 453 (921)
.|.....++...+.....+..... .+|+.++..+..|..+.+ .......---.....|-..
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~---------~~~~~~e~~l~~L~~d~~----------~L~~k~~~~~~~~~~l~~~ 81 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQK---------QQLDPLEKELESLEQDVE----------NLQEKATKVSRKAQQLNNN 81 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHH---------HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002440 454 GEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALA 533 (921)
Q Consensus 454 GEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr~~~a~EK~lqE~lEk~qkEL~a~k~~~~~~L~ 533 (921)
.+..-..-..+...|++++..|.++-+.+..+.. .-....-..+.+....+++-+++..... +..........+.
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r~---f~~~~~~Ae~El~ 156 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKRD---FTPQRQNAEDELK 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 002440 534 AAKEAEELAEARAN-NEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQ---RRYQASER 609 (921)
Q Consensus 534 aAKe~a~~AEarA~-~Ea~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLe---qRLEeAEa 609 (921)
.|.. -+...+.. ..-....+..+....+.-......+.|||..|.+|......-+.-.+.-...|+ .+++....
T Consensus 157 ~A~~--LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 157 EAED--LLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSE 234 (264)
T ss_pred HHHH--HHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcCCccchHH
Q 002440 610 RCEELVTQVPESTRPL 625 (921)
Q Consensus 610 RaEELSssv~eATrPL 625 (921)
...+++.-+.++..-|
T Consensus 235 ~~~~~~~~L~~a~~~L 250 (264)
T PF06008_consen 235 QQNEVSETLKEAEDLL 250 (264)
T ss_pred HHHHHHHHHHHHHHHH
No 296
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.98 E-value=8.3e+02 Score=28.00 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccch---HHHHHHHHHHHHHH
Q 002440 597 IEDLQRRYQASERRCEELVTQVPESTR---PLLRQIEAIQETTA 637 (921)
Q Consensus 597 IsdLeqRLEeAEaRaEELSssv~eATr---PLLRQIEtLQaq~a 637 (921)
|..|.+++...+.+-.++.+.-++.+- -|-+||+.|+.++.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 556667777777777777665443322 23446666665553
No 297
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.62 E-value=1.3e+03 Score=30.17 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 393 TNDAELETLREEYHQRVATLERKVYALTKERD 424 (921)
Q Consensus 393 s~eael~~LkeEyteRIdALErKLQ~L~KERD 424 (921)
.++.....+...|++.++...-|++-++++.|
T Consensus 639 ~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD 670 (970)
T KOG0946|consen 639 TEEEEQTQLAEKYHEELDDIQQKYKGLIRELD 670 (970)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777888888877777777777766
No 298
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.59 E-value=4e+02 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 681 RINVLEAQISCLRAEQTQLTKS 702 (921)
Q Consensus 681 ri~~LEsQls~lR~E~~qL~~q 702 (921)
.|..-..+++.|+.|-..|..+
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555555433
No 299
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=31.49 E-value=6e+02 Score=26.19 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 002440 593 LRRDIED 599 (921)
Q Consensus 593 LR~EIsd 599 (921)
+|.++.+
T Consensus 143 l~~~i~~ 149 (184)
T PRK13455 143 VRDRAVS 149 (184)
T ss_pred HHHHHHH
Confidence 3333333
No 300
>PRK11519 tyrosine kinase; Provisional
Probab=31.20 E-value=1.1e+03 Score=29.36 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 002440 732 NQLEEEIKE 740 (921)
Q Consensus 732 ~qLEeel~~ 740 (921)
.+|+-+...
T Consensus 373 ~~L~Re~~~ 381 (719)
T PRK11519 373 VRLTRDVES 381 (719)
T ss_pred HHHHHHHHH
Confidence 334433333
No 301
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.18 E-value=6e+02 Score=26.11 Aligned_cols=87 Identities=28% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Q 002440 444 DEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKR---DKTATEKLLQETIEKHQVE 520 (921)
Q Consensus 444 DEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~kr---~~~a~EK~lqE~lEk~qkE 520 (921)
|++|..+| ..|-..|...+.+......+++.++..+..--..+..++. ..+. ++..++.++..
T Consensus 1 ~eqi~~Im----------~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~ee----Lk~~i~~lq~~ 66 (155)
T PF06810_consen 1 DEQIDKIM----------AENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEE----LKKQIEELQAK 66 (155)
T ss_pred ChHHHHHH----------HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH----HHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q 002440 521 LGEQKDYYTNALAAAKEAEELAEA 544 (921)
Q Consensus 521 L~a~k~~~~~~L~aAKe~a~~AEa 544 (921)
....+..|...+...+-..++-.+
T Consensus 67 ~~~~~~~~e~~l~~~~~~~ai~~a 90 (155)
T PF06810_consen 67 NKTAKEEYEAKLAQMKKDSAIKSA 90 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 302
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.82 E-value=7.5e+02 Score=27.11 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=10.4
Q ss_pred HHHHhhhhhhhhHHHHH
Q 002440 853 SAFESILRQKEGELASY 869 (921)
Q Consensus 853 s~lQSqLKqREGEIaqL 869 (921)
..||-||+----||.++
T Consensus 185 k~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 185 KRLQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888886554555443
No 303
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.37 E-value=5.9e+02 Score=30.32 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002440 748 ELQEALMHRELLQQEI 763 (921)
Q Consensus 748 ~l~e~~~~~~llq~ql 763 (921)
.+.++.+++..|+++|
T Consensus 153 ~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 153 RIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444544
No 304
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.19 E-value=3.3e+02 Score=24.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002440 406 HQRVATLERKVYALTKERDTLRR 428 (921)
Q Consensus 406 teRIdALErKLQ~L~KERDaLRr 428 (921)
-.|..+|+.++..|.++.+.+|.
T Consensus 38 E~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 35555666666666666555543
No 305
>PLN02320 seryl-tRNA synthetase
Probab=29.12 E-value=2.4e+02 Score=34.22 Aligned_cols=21 Identities=0% Similarity=0.212 Sum_probs=11.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q 002440 339 DSVCELEKLKREMKMMETALQ 359 (921)
Q Consensus 339 ds~~elekL~~ei~~le~~l~ 359 (921)
-.|.++..++.....+...|.
T Consensus 64 ~~mlD~k~ir~n~~~v~~~l~ 84 (502)
T PLN02320 64 KAAIDFKWIRDNKEAVAINIR 84 (502)
T ss_pred ccccCHHHHHhCHHHHHHHHH
Confidence 345667777665554444444
No 306
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.65 E-value=2.2e+02 Score=31.52 Aligned_cols=21 Identities=5% Similarity=-0.176 Sum_probs=9.0
Q ss_pred ccccchhccCCCCCCCCCccc
Q 002440 132 ENLDFVVSEHGKVDSESNIVP 152 (921)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (921)
+.+...+.|.+.......+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~ 58 (269)
T KOG3119|consen 38 DAGLEALQDLDVGLSNVDLPD 58 (269)
T ss_pred cccchhcccccccccccCCcc
Confidence 333334444444444444443
No 307
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.45 E-value=7.4e+02 Score=26.36 Aligned_cols=53 Identities=32% Similarity=0.349 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 703 LEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMH 755 (921)
Q Consensus 703 LE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~ 755 (921)
|..-+.++.....++...+-+..-++.+...++.+...|..++...+.+..+.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666677788888888888888887777776543
No 308
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.37 E-value=5.3e+02 Score=28.53 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=13.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhh
Q 002440 369 ADEIAKMMNENEHLKAVIEDLKR 391 (921)
Q Consensus 369 s~eiA~L~e~NdqLk~eie~lk~ 391 (921)
..+++++.+.|..|..+|..+..
T Consensus 12 ~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 12 EAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444556666666666665553
No 309
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=28.34 E-value=1.3e+02 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASER 609 (921)
Q Consensus 567 ~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEa 609 (921)
.|+++|..|+++.++|++..-+ +|...+++|+-.|++
T Consensus 11 EL~~Ei~~L~ekarKAEq~G~~------nE~aV~erK~~mAks 47 (102)
T PF08838_consen 11 ELRQEIARLKEKARKAEQLGIV------NEYAVYERKIIMAKS 47 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-H------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCc------cHHHHHHHHHHHHHH
Confidence 4888999999999999988766 889999999977764
No 310
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.29 E-value=7.8e+02 Score=26.54 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002440 621 STRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQL 699 (921)
Q Consensus 621 ATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL 699 (921)
......+|+-....+...+-..|..--..|..++..+..+.+.....-+.+...+.....++..|+.++..+......+
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666666555555555555555555555555544433333
No 311
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.95 E-value=3.2e+02 Score=31.14 Aligned_cols=62 Identities=31% Similarity=0.421 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 002440 647 ERSLNLRLQEAEAKAAASEERERSVNE---RLSQT-----LSRINVLEAQISC--LRAEQTQLTKSLEKERQRAA 711 (921)
Q Consensus 647 E~sL~~RL~eaEk~~~eA~eREre~~E---rl~~l-----ksri~~LEsQls~--lR~E~~qL~~qLE~Er~r~~ 711 (921)
-+.|.+||.+.+.++.+ ||.++.+ +|..+ ...|.-.|+||+. .|.|..||++-++.-|..+.
T Consensus 70 iRHLkakLkes~~~l~d---RetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHD---RETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45677888887776544 6655554 33332 5566777777775 66777777777776665544
No 312
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.83 E-value=1.1e+03 Score=28.18 Aligned_cols=126 Identities=15% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~ 420 (921)
..|+..||++|..|-+.+..-.... ...|..+-+....++.--......++-.-++.-+..|..+-+.|-.||-.|.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~---~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQ 226 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEV---KESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQ 226 (424)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688899999888876555322111 1122222222223332111111113334466666677777777777776666
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHH
Q 002440 421 KERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (921)
Q Consensus 421 KERDaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRak 474 (921)
.=.+.||+... ....+=.--++..++.+-..+.+.-..+...|+.++-.
T Consensus 227 D~VE~LRkDV~-----~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~ 275 (424)
T PF03915_consen 227 DLVEDLRKDVV-----QRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPI 275 (424)
T ss_dssp HHHHHHHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 66666666543 22333334466677777777777766666666666543
No 313
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.38 E-value=4.3e+02 Score=27.28 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002440 465 EAQIRKLRAQIRELEEEKKGLVT 487 (921)
Q Consensus 465 e~iIKKLRakikE~Eee~~~Lk~ 487 (921)
..-|++|+.+++..+.+...|+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.38 E-value=1e+03 Score=27.69 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (921)
Q Consensus 628 QIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er 707 (921)
.|+.|+.-...=...+...-..|..=-.++.+.++-..-||.-+|.++..+......+..+++..+....+++..+...-
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555555555555554556666777777788888887777766666666666666655555555554433
Q ss_pred HHHHHhHHHHHHHH
Q 002440 708 QRAAENRQEYLAAK 721 (921)
Q Consensus 708 ~r~~~~rqe~~aak 721 (921)
..+...-+++...|
T Consensus 301 ~~L~~IseeLe~vK 314 (359)
T PF10498_consen 301 RELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 315
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.36 E-value=4.8e+02 Score=29.87 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHH-HHH
Q 002440 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQ-IEA 631 (921)
Q Consensus 553 ~Le~~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQ-IEt 631 (921)
-|+-++++...+-.-=..+|.+|+..|.|..+.| .-.|.-..+-.|---|+|.| -+=||| |||
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDW------IEEECHRVEAQLALKEARkE----------IkQLkQvieT 135 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDW------IEEECHRVEAQLALKEARKE----------IKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 3444444444322222268999999997766554 33455555555555555554 223444 677
Q ss_pred HHHHHH
Q 002440 632 IQETTA 637 (921)
Q Consensus 632 LQaq~a 637 (921)
|.+.++
T Consensus 136 mrssL~ 141 (305)
T PF15290_consen 136 MRSSLA 141 (305)
T ss_pred HHhhhc
Confidence 766554
No 316
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.63 E-value=5.4e+02 Score=24.11 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 557 RLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCE 612 (921)
Q Consensus 557 ~lkEaeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaE 612 (921)
.+.++.++...|.+++.+++..- +.-.+.-..|+.|...-+.|++++-.+-+
T Consensus 26 EieELKEknn~l~~e~q~~q~~r----eaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQR----EALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444444555444443322 22223334567777777777766554443
No 317
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.48 E-value=1.7e+03 Score=29.85 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 002440 563 ERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEA 642 (921)
Q Consensus 563 ErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asen 642 (921)
+|+.=++.+|..|...+ ..-...|..|..|+.+|+.-+.+--.+..++.+++.+. =-+|+.+
T Consensus 390 eRDkwir~ei~~l~~~i----~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~----~~r~~~~---------- 451 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGI----NDTKEQENILQKEIEDLESELKEKLEEIKELESSINET----KGRMEEF---------- 451 (1200)
T ss_pred HHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh----hhHHHHH----------
Confidence 34445666666655554 34455677888888888888888777777777776531 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002440 643 WAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRI 682 (921)
Q Consensus 643 We~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri 682 (921)
.+-=.++..++.++.-.+-.+-+.|..+...+..++.-+
T Consensus 452 -~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl 490 (1200)
T KOG0964|consen 452 -DAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDL 490 (1200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345677777777777777777766665554444333
No 318
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.30 E-value=1.1e+02 Score=29.01 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhhhc
Q 002440 364 QAQAKADEIAKMMNENEHLKAVIEDLKRKT 393 (921)
Q Consensus 364 q~qsks~eiA~L~e~NdqLk~eie~lk~ks 393 (921)
++....+++++|+.+|.+|+.+..-....-
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446678899999999987765444433
No 319
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.15 E-value=1.6e+02 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=40.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheeeeee
Q 002440 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFILRISIELLYISIHIFMF 918 (921)
Q Consensus 857 SqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~~l~~~~~~~~~~~~~~ 918 (921)
..+.+...+|+.|+.++..+....+.|..++-.|++ ..+.+..+-+=+.-+.|-.=+||.|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~-~~~~ie~~AR~~lgm~~~~E~v~~~ 77 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN-DPDYIEKVAREKLGMVKPGEIVFKI 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCCcCCCCEEEeC
Confidence 455677789999999999999999999999999933 2233333333333333333444444
No 320
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.06 E-value=3.6e+02 Score=24.96 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=45.6
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002440 853 SAFESILRQKEGELASYMSRLASM------------ESIRDSLAEELVKMTAQVHVQVVFILRIS 905 (921)
Q Consensus 853 s~lQSqLKqREGEIaqLQ~el~~l------------E~tR~~LaEELVkLT~q~Ee~v~~i~~l~ 905 (921)
.+|-.-|+.=..|+.||..+...| -+.|..|+.+|-.|....|.+-..|-+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888889999998888888 36799999999999999999988887764
No 321
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.04 E-value=7.3e+02 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhhHHHHHH
Q 002440 337 SADSVCELEKLKREMKMMETALQGAARQAQA----KADEIAKMMNENEHLKA 384 (921)
Q Consensus 337 s~ds~~elekL~~ei~~le~~l~~a~rq~qs----ks~eiA~L~e~NdqLk~ 384 (921)
..+..-|+-.|++++..|+..|..+.+.... -....+-+..+.++|.+
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 4577779999999999999999988666544 11223344566666654
No 322
>PRK02119 hypothetical protein; Provisional
Probab=26.01 E-value=2.8e+02 Score=25.23 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHH
Q 002440 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIE 387 (921)
Q Consensus 344 lekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie 387 (921)
+..+-.||-.||..+---..-+..+++-+++.+...+.|+.++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555544433344444444444444444444443333
No 323
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.57 E-value=4.7e+02 Score=27.29 Aligned_cols=59 Identities=25% Similarity=0.485 Sum_probs=42.9
Q ss_pred HHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhHHHH
Q 002440 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESI 499 (921)
Q Consensus 437 aa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~le~~ 499 (921)
...|-++|..+..++.+ -.........|..||+.+..++..++.+-.+|......+..+
T Consensus 4 ~~~L~~~d~~L~~~L~~----l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 4 AEDLIEADDELSSALEE----LQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888877655 245666778888999998888888888777666665555444
No 324
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.90 E-value=1.5e+03 Score=28.67 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 002440 399 ETLREEYHQRVATLERKVYALTKERDTLRREQNKK-SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRE 477 (921)
Q Consensus 399 ~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~-s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE 477 (921)
..+...-.++|..|+.+++.+.++...++.+.... ......+.+=..+|..|-+....|=.+. .-....|||+.+|-|
T Consensus 233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33334344556666666665555555444433221 2223344444444555555555555544 444444555555544
Q ss_pred HH
Q 002440 478 LE 479 (921)
Q Consensus 478 ~E 479 (921)
+.
T Consensus 312 Lk 313 (670)
T KOG0239|consen 312 LK 313 (670)
T ss_pred hh
Confidence 43
No 325
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.80 E-value=1.3e+03 Score=28.10 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 572 LEELRQTLSRTEQQAVFREDMLRRD 596 (921)
Q Consensus 572 I~DLRekLeRaee~Aa~rEdeLR~E 596 (921)
..+++......++.+..++++.+.|
T Consensus 305 aee~k~Eak~~~~~ae~K~~Eaq~e 329 (489)
T PF05262_consen 305 AEELKQEAKSQEKEAEKKEEEAQQE 329 (489)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHHHH
Confidence 5556666666777777777777755
No 326
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=24.67 E-value=7.2e+02 Score=24.90 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 002440 592 MLRRDIED 599 (921)
Q Consensus 592 eLR~EIsd 599 (921)
+|+.++.+
T Consensus 120 ~l~~ei~~ 127 (159)
T PRK13461 120 EIKNQAVD 127 (159)
T ss_pred HHHHHHHH
Confidence 44444444
No 327
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.62 E-value=1.2e+03 Score=28.85 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002440 622 TRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLR 693 (921)
Q Consensus 622 TrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR 693 (921)
+..|.+++..|..++-..--.++..=.+|...|+++..+++.....=......|..+...|...|.|+.-+.
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lq 78 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQ 78 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 467888999999888888888888888888889999988888887777777788888888888888887655
No 328
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.54 E-value=5.4e+02 Score=23.43 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002440 575 LRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQV 618 (921)
Q Consensus 575 LRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv 618 (921)
+-..|++.+..-+.....+..|-..|..|.+.|+.|.|-+-+..
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555566667778899999999999999998876653
No 329
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.51 E-value=3.2e+02 Score=30.41 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002440 618 VPES-TRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQ 696 (921)
Q Consensus 618 v~eA-TrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~ 696 (921)
+++. .--|||.++.|=..|-.. .+.+++..+..+-+.+...+..+++++
T Consensus 154 ~~d~dvevLL~~ae~L~~vYP~~------------------------------ga~eki~~Lr~~y~~l~~~i~~lE~~V 203 (259)
T PF08657_consen 154 VEDVDVEVLLRGAEKLCNVYPLP------------------------------GAREKIAALRQRYNQLSNSIAYLEAEV 203 (259)
T ss_pred cccCCHHHHHHHHHHHHHhCCCh------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433 567899999998888655 334445555555555666666666666
Q ss_pred HHHHHHHHH
Q 002440 697 TQLTKSLEK 705 (921)
Q Consensus 697 ~qL~~qLE~ 705 (921)
+.-..+|+.
T Consensus 204 aeQ~~qL~~ 212 (259)
T PF08657_consen 204 AEQEAQLER 212 (259)
T ss_pred HHHHHHHHH
Confidence 665666664
No 330
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.50 E-value=6.1e+02 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 002440 727 QEGRANQLEEEIKELRRKHKQEL 749 (921)
Q Consensus 727 qE~r~~qLEeel~~l~~k~~q~l 749 (921)
....+.+|..+...|..++...|
T Consensus 51 L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777766654433
No 331
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=24.45 E-value=28 Score=23.10 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=6.5
Q ss_pred ccchhhhcccCC
Q 002440 59 LWPVMSFMGHKS 70 (921)
Q Consensus 59 ~~~~~~~~~~~~ 70 (921)
.|.|=.|||.||
T Consensus 3 ~WAvGh~Mgkks 14 (14)
T PF02044_consen 3 QWAVGHFMGKKS 14 (14)
T ss_dssp TCHHHCT-----
T ss_pred ccceeeeeccCC
Confidence 699999999886
No 332
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.43 E-value=9.4e+02 Score=26.18 Aligned_cols=103 Identities=28% Similarity=0.351 Sum_probs=62.0
Q ss_pred HHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH-H
Q 002440 650 LNLRLQEAEAK-AAASEERE---RSVNERLSQTLSRINVLEAQISCLR---AEQTQLTKSLEKERQRAAENRQEYLAA-K 721 (921)
Q Consensus 650 L~~RL~eaEk~-~~eA~eRE---re~~Erl~~lksri~~LEsQls~lR---~E~~qL~~qLE~Er~r~~~~rqe~~aa-k 721 (921)
|..||.-+|.+ +....++= +++|-++......|..|..-+..|. +|+..|+--|...|++-.+..-+|-+. +
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGr 100 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGR 100 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhh
Confidence 56677766654 22333333 4555577777777788887777776 455555666777888777655444332 2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 722 EEADTQEGRANQLEEEIKELRRKHKQELQEA 752 (921)
Q Consensus 722 ee~~~qE~r~~qLEeel~~l~~k~~q~l~e~ 752 (921)
-.+.-+...+..++..|++|+.+....+.+.
T Consensus 101 yta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 101 YTASVMRQEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2333334447778888888777654444443
No 333
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.40 E-value=1.1e+03 Score=26.97 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002440 673 ERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEA 724 (921)
Q Consensus 673 Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~ 724 (921)
..|..+..+..-.=-.++.|-.|++.|.-+++..+.++.++.+.+...+.++
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444555555555555555555555544444444433
No 334
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=24.27 E-value=6.7e+02 Score=29.92 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (921)
Q Consensus 341 ~~elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~ 420 (921)
|..|++|++++...|++|-.| || +|...+.+....-++++..+ + . .-..-++++|.|+-.|.
T Consensus 1 m~~~~elq~e~~~~E~qL~~a-~q---------kl~da~~~~e~dpD~~nk~~----~---~-~R~~~v~~~~~Ki~elk 62 (428)
T PF00846_consen 1 MSTLEELQEEITQHEQQLVIA-RQ---------KLKDAEKQYEKDPDDVNKST----L---Q-QRQSVVSALQDKIAELK 62 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HHHHHH----H---H-HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHhcCCChHHHHHH----H---H-HHHHHHHHHHHHHHHHH
Confidence 578999999999999999885 55 55555555544434333321 1 1 01123667777776665
Q ss_pred HHHH
Q 002440 421 KERD 424 (921)
Q Consensus 421 KERD 424 (921)
+..+
T Consensus 63 r~lA 66 (428)
T PF00846_consen 63 RQLA 66 (428)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 335
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=1.1e+03 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002440 580 SRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (921)
Q Consensus 580 eRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSs 616 (921)
..+--..+..+..+.+|...|+.+...++.-+.++..
T Consensus 196 ~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a~~~a~ 232 (265)
T COG3883 196 NALIAALAAKEASALGEKAALEEQKALAEAAAAEAAK 232 (265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777887777555555555554443
No 336
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.22 E-value=5.5e+02 Score=23.43 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 561 AGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQ 605 (921)
Q Consensus 561 aeErEe~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLE 605 (921)
+..+.......+..|...+...+.++.......+.+...|..-|+
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444555555555555555554443
No 337
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.10 E-value=1.4e+03 Score=27.91 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 649 SLNLRLQEAEAKAAASEERERSVNERLS 676 (921)
Q Consensus 649 sL~~RL~eaEk~~~eA~eREre~~Erl~ 676 (921)
.|..|...++.+.+....++..+..+..
T Consensus 84 rL~qRee~Lekr~e~Lekre~~Le~ke~ 111 (514)
T TIGR03319 84 RLLQREETLDRKMESLDKKEENLEKKEK 111 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555444433
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.78 E-value=1.1e+03 Score=26.76 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=21.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002440 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQVHVQVVFIL 902 (921)
Q Consensus 857 SqLKqREGEIaqLQ~el~~lE~tR~~LaEELVkLT~q~Ee~v~~i~ 902 (921)
..|..-+.++...+.+|...+..=..+.+.|..|+.++++.+.+.-
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~ 266 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQ 266 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444445555555555544444433
No 339
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.77 E-value=1e+03 Score=26.40 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH
Q 002440 400 TLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQI 475 (921)
Q Consensus 400 ~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~----s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRaki 475 (921)
++++-...-++.||--+..|+.-...-+++.--+ ...-.+|--||+-|+.|| ||.-.|.+.+..|+-|++++
T Consensus 8 StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~ll----kla~eq~k~e~~m~~Lea~V 83 (272)
T KOG4552|consen 8 STRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLL----KLAPEQQKREQLMRTLEAHV 83 (272)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHH----HHhHhHHHHHHHHHHHHHHH
Confidence 4566667777777776666655443222332211 234568899999999999 57778888899999999999
Q ss_pred HHHHHHHHHHHhHHHH
Q 002440 476 RELEEEKKGLVTKLQV 491 (921)
Q Consensus 476 kE~Eee~~~Lk~KlE~ 491 (921)
.-.++.+..|++.+..
T Consensus 84 EkrD~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 84 EKRDEVIQQLQKNLKS 99 (272)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 8888888888765544
No 340
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.45 E-value=8.7e+02 Score=25.42 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHH
Q 002440 565 ETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWA 644 (921)
Q Consensus 565 Ee~L~~qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe 644 (921)
+..|+..+..+|..+.-+....... ..++..-.+++..-..|...+..|.+..+ |..+ -+|+
T Consensus 17 ~~rL~~~L~~~r~al~~~~a~~~~~----~a~v~~~~~~l~~~~~ri~~m~~gg~~f~------i~~~--------~~~~ 78 (158)
T PF09486_consen 17 ERRLRARLAAQRRALAAAEAELAEQ----QAEVEAARQRLRAHDARIDAMMTGGAPFS------IDEY--------LALR 78 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHcCCCCcc------HHHH--------HHHH
Confidence 3456666666666665544433322 23333444455555555566555444333 3333 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 645 AVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (921)
Q Consensus 645 ~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~ 705 (921)
..=..|..++..++.+++.+...=.....++..+...|.-+..++...+....+|...++.
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea 139 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5555666777777776666655555555555555555555555555555555555444443
No 341
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.35 E-value=6.2e+02 Score=23.67 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 718 LAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRE 757 (921)
Q Consensus 718 ~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~~ 757 (921)
...-.++......+-.|+..=..++.+|..++.-++.+++
T Consensus 35 ~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 35 NSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666777777777777777777776665443
No 342
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=23.28 E-value=6.8e+02 Score=24.10 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (921)
Q Consensus 641 enWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r 709 (921)
.+++..=..+..+|.++++.+-...++-++.-..+..+..+...-.. ....+.++..+...|...|.+
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777777777777777766666666655444433333 233444444444445444433
No 343
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.14 E-value=1.4e+03 Score=27.78 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=43.2
Q ss_pred HHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhH
Q 002440 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKV 496 (921)
Q Consensus 437 aa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~KlE~e~~~l 496 (921)
...|..|-.++.-+.....-|..+..+..+.+.+|+-++..+-+..+.|+..++.++++.
T Consensus 438 ~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 438 VESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666667777777777777777888887777777777777777766553
No 344
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=23.09 E-value=1.1e+03 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 002440 713 NRQEYLAAKEEADTQEGRANQLEEEIK 739 (921)
Q Consensus 713 ~rqe~~aakee~~~qE~r~~qLEeel~ 739 (921)
++++|+.++......+..+.+.+.++.
T Consensus 150 S~~~~~~a~~~~~~a~~~l~~a~~~~~ 176 (346)
T PRK10476 150 SAQQVDQARTAQRDAEVSLNQALLQAQ 176 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444443
No 345
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.08 E-value=7.9e+02 Score=24.84 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHH
Q 002440 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEI 446 (921)
Q Consensus 367 sks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KERDaLRre~ak~s~aaa~LaEKDEq 446 (921)
++++-.+.+..+.+++ .+.|..-|.++++||+.|..|+. +..+.
T Consensus 40 ~m~~A~~~v~kql~~v------------s~~l~~tKkhLsqRId~vd~klD------------------------e~~ei 83 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQV------------SESLSSTKKHLSQRIDRVDDKLD------------------------EQKEI 83 (126)
T ss_pred hHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhHH------------------------HHHHH
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002440 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (921)
Q Consensus 447 Ia~LMEEGEKLSKkQlq~e~iIKKLRakikE~Eee~~~Lk~K 488 (921)
+++..++=..+...--+....|+.+..-+..++-.+.++..|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 346
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.98 E-value=6.9e+02 Score=31.06 Aligned_cols=55 Identities=11% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 596 DIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA---RRAEAWAAVERSLNLRLQEAEAKA 661 (921)
Q Consensus 596 EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a---~asenWe~iE~sL~~RL~eaEk~~ 661 (921)
-+..+..|+..++.+..+ +-.|+.+||..|. .....|.-.|...+-|++.-+..+
T Consensus 379 ~~~~~~~~l~~le~~l~~-----------~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l 436 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLAD-----------AQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQL 436 (656)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444 3345666666663 345889888888887777766554
No 347
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.92 E-value=1.5e+03 Score=28.11 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002440 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRA 694 (921)
Q Consensus 648 ~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~ 694 (921)
..+...|.++--.+.++...-+..-+.+.-.-.++...+..+..+++
T Consensus 265 ~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~ 311 (557)
T COG0497 265 SELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKS 311 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34556667777777777776666666544444555566666555543
No 348
>PF14282 FlxA: FlxA-like protein
Probab=22.69 E-value=4.3e+02 Score=25.42 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 672 NERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 672 ~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
..+...+..+|..|++|+..+..++..
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777665555444
No 349
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.66 E-value=7e+02 Score=24.02 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (921)
Q Consensus 343 elekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KE 422 (921)
.+.++......+...|.. ...+.-.+...|..|-.++..+..+.+...- ..++...|..++++++...+-
T Consensus 4 ~~~~~~~~~~~l~~~L~~-------v~~~~l~l~~~n~el~~el~~l~~~~~~~~~---~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSD-------VEKKRLRLKRRNQELAQELLELAEKQKSQRE---DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555543 3556667788888888888888876532221 577889999999999866555
Q ss_pred HHHHH
Q 002440 423 RDTLR 427 (921)
Q Consensus 423 RDaLR 427 (921)
...++
T Consensus 74 ~~v~k 78 (106)
T PF05837_consen 74 WRVMK 78 (106)
T ss_pred HHHHH
Confidence 55444
No 350
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.53 E-value=1.8e+03 Score=28.88 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002440 631 AIQETTARRAEAWAAVERSLNL 652 (921)
Q Consensus 631 tLQaq~a~asenWe~iE~sL~~ 652 (921)
.|++-|..+-.+.+.+=+.|..
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3556666666666665555543
No 351
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.37 E-value=3.7e+02 Score=32.58 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 002440 668 ERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELR 742 (921)
Q Consensus 668 Ere~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~ 742 (921)
+..-.-++.+.+.+++.||.+++.+|++...+.++++....++.+. +..+.+|+.+++.+.
T Consensus 64 dkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeL--------------EaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 64 DKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKL--------------GQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--------------HHHHHHHHHHHHhhh
No 352
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.21 E-value=7.6e+02 Score=24.27 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
Q 002440 614 LVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE----------------------RERSV 671 (921)
Q Consensus 614 LSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~e----------------------REre~ 671 (921)
..+.++.--..++.++..||.++..-...-+.++..+ .+++.-.++... --..+
T Consensus 1 ~~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~----~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l 76 (121)
T PRK09343 1 MAENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLEL----REINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKEL 76 (121)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 672 NERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (921)
Q Consensus 672 ~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r 709 (921)
+.++.-+..+|..++.+...++.....++.+|..-...
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 353
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.20 E-value=6e+02 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002440 672 NERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 672 ~Erl~~lksri~~LEsQls~lR~E~~q 698 (921)
..++..+-.++..|...|..||++...
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666555555444
No 354
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.12 E-value=8.3e+02 Score=24.69 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 677 QTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHR 756 (921)
Q Consensus 677 ~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~q~l~e~~~~~ 756 (921)
.+-++++.||.++..|.+.-.+.-+........+...-.++.+.+........++... .+.+=++++|+.-++....-+
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002440 757 ELLQQEIERE 766 (921)
Q Consensus 757 ~llq~qlE~E 766 (921)
..|..++...
T Consensus 103 ~~L~k~I~~~ 112 (126)
T PF09403_consen 103 NKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.05 E-value=4.9e+02 Score=31.87 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 621 STRPLLRQIEAIQETTARRAEAWAAVER 648 (921)
Q Consensus 621 ATrPLLRQIEtLQaq~a~asenWe~iE~ 648 (921)
....|..+++.++..+...-+-|+.++-
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999885
No 356
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.04 E-value=1.1e+03 Score=26.17 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Q 002440 634 ETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERL-SQTLSRINVLEAQISCLRA 694 (921)
Q Consensus 634 aq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl-~~lksri~~LEsQls~lR~ 694 (921)
.-|+.+-..|.++|..|..-|.....-++.....=+.+++.+ .....-+..+..=..++|+
T Consensus 89 ~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~ 150 (240)
T cd07667 89 REYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKN 150 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999998888888888888766 3355555555555555554
No 357
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.02 E-value=1.1e+03 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=28.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002440 619 PESTRPLLRQIEAIQETTARRAEAWAAVERSLN----LRLQEAEAKAAAS 664 (921)
Q Consensus 619 ~eATrPLLRQIEtLQaq~a~asenWe~iE~sL~----~RL~eaEk~~~eA 664 (921)
|...+..-+++...+..+......+......|. .++..+....+..
T Consensus 181 Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 230 (301)
T PF14362_consen 181 GPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAK 230 (301)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 355666677777777777776666666666666 5554444444433
No 358
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.19 E-value=2.2e+03 Score=29.42 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (921)
Q Consensus 571 qI~DLRekLeRaee~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eATrPLLRQIEtLQaq~a~asenWe~iE~sL 650 (921)
=.++|.++|+||-+=++|.= ....+|+.|.-.+-+|+--.-.||.+. - -+++.+---|.|..+
T Consensus 1094 c~eel~~a~q~am~ghar~~----e~ya~l~ek~~~ll~~hr~i~egi~dv-----------k--kaaakag~kg~~~~f 1156 (1320)
T PLN03188 1094 CAEELKEAMQMAMEGHARML----EQYADLEEKHIQLLARHRRIQEGIDDV-----------K--KAAARAGVRGAESKF 1156 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHhccccchHHH
Confidence 35678888888888777632 233566666666666664444443332 1 123333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhH
Q 002440 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK---ERQRAAENRQEYLAAKEEADTQ 727 (921)
Q Consensus 651 ~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~qLE~---Er~r~~~~rqe~~aakee~~~q 727 (921)
..-|+.--..+..-.++||..- ..++..|+..+..-...+++ ..-|+.+..+....|++.+...
T Consensus 1157 ~~alaae~s~l~~ereker~~~-------------~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~ 1223 (1320)
T PLN03188 1157 INALAAEISALKVEREKERRYL-------------RDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDA 1223 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333344344444321 11222222222222222221 1224444445566677777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 728 EGRANQLEEEIKELRRKHKQELQEAL 753 (921)
Q Consensus 728 E~r~~qLEeel~~l~~k~~q~l~e~~ 753 (921)
+..+..+..++..|+.||..++..++
T Consensus 1224 eqe~~~~~k~~~klkrkh~~e~~t~~ 1249 (1320)
T PLN03188 1224 EQEAAEAYKQIDKLKRKHENEISTLN 1249 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888877775554
No 359
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.02 E-value=1.2e+03 Score=25.96 Aligned_cols=120 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKER 423 (921)
Q Consensus 344 lekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eael~~LkeEyteRIdALErKLQ~L~KER 423 (921)
|..-......++..+..+.++|..+.++++.....++.+..+...+.... ..+...+-.+...++..+..|....
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~-----~~~~~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQ-----KEQEQMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 002440 424 DTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (921)
Q Consensus 424 DaLRre~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~e~iIKKLRakikE~E 479 (921)
. ......+.+.+..+..-+.+-+.|. .-.+...+.+|+.+|.++.
T Consensus 253 e---------~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 253 E---------EEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 360
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=20.97 E-value=2.3e+03 Score=29.38 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHH
Q 002440 655 QEAEAKAAASEERERSVNE--RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRAN 732 (921)
Q Consensus 655 ~eaEk~~~eA~eREre~~E--rl~~lksri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~ 732 (921)
.++.-.++....+||.+.+ .+..+..++..++.+++.++-+..... ...-+.+...+...+.....+-....|++.
T Consensus 988 ~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~k 1065 (1294)
T KOG0962|consen 988 NEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMK 1065 (1294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 3333334444445555444 555666666666666666665555544 122222333444555566666777788888
Q ss_pred HHHHHHHHHHHHHH
Q 002440 733 QLEEEIKELRRKHK 746 (921)
Q Consensus 733 qLEeel~~l~~k~~ 746 (921)
+++.++..++.++.
T Consensus 1066 e~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1066 QYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888877666654
No 361
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.93 E-value=6.4e+02 Score=22.94 Aligned_cols=65 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 550 ARAELESRLREAGERETMLVQALEELRQTLSRTEQ-----------QAVFREDMLRRDIEDLQRRYQASERRCEEL 614 (921)
Q Consensus 550 a~~~Le~~lkEaeErEe~L~~qI~DLRekLeRaee-----------~Aa~rEdeLR~EIsdLeqRLEeAEaRaEEL 614 (921)
....+...+.++...+..|..+|..+..+|....+ ....+=..+|.++..+..|++.+..|+.-|
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 362
>PRK10869 recombination and repair protein; Provisional
Probab=20.90 E-value=1.6e+03 Score=27.46 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHH
Q 002440 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-NDAELETLREEYHQRVATLERK 415 (921)
Q Consensus 345 ekL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks-~eael~~LkeEyteRIdALErK 415 (921)
..++.+++..=..+..+.+++..+.........+.|-|+-+++++.... ...+-+.|..+| .|+...++=
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~-~~L~n~e~i 223 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEY-KRLANSGQL 223 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH-HHHHHHHHH
Confidence 4567777777777777777777777777777778888888887777742 334445555554 344444433
No 363
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=20.79 E-value=1.8e+02 Score=33.51 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 002440 594 RRDIEDLQRRYQASERRCEELVTQVPES 621 (921)
Q Consensus 594 R~EIsdLeqRLEeAEaRaEELSssv~eA 621 (921)
++++..+..||-++|.....|..+|+..
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~l 54 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSL 54 (326)
T ss_dssp ----------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888887653
No 364
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.64 E-value=4.6e+02 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002440 736 EEIKELRRKHKQELQEALMHRELLQQEI 763 (921)
Q Consensus 736 eel~~l~~k~~q~l~e~~~~~~llq~ql 763 (921)
++|+.|+.++.+++..-++++..++..|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666655666666555544
No 365
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.48 E-value=5.9e+02 Score=22.70 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHH
Q 002440 681 RINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRA 731 (921)
Q Consensus 681 ri~~LEsQls~lR~E~~qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~ 731 (921)
+|..|..++..|-..+.+|...+..- +.+..+|+.+++....|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~l-------r~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNAL-------RADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45555556666666666655554432 344456666666555444
No 366
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.47 E-value=1e+03 Score=25.25 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 002440 562 GERETMLVQALEELRQTLSRTE---QQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPES 621 (921)
Q Consensus 562 eErEe~L~~qI~DLRekLeRae---e~Aa~rEdeLR~EIsdLeqRLEeAEaRaEELSssv~eA 621 (921)
++-+..|.+-|.+++..|..+. ...-..+..+...+..++.+....+.|+.-+-+..-+.
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed 85 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED 85 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3333456666666665555544 33444566778888888888888888888877765543
No 367
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.31 E-value=1.1e+03 Score=26.72 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002440 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (921)
Q Consensus 623 rPLLRQIEtLQaq~a~asenWe~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~~ 701 (921)
+-|--||-|||-|++-+..+. .+++..+++|...-..++.++.+++-+-+...-..+=|++.++-|..
T Consensus 19 ~~LhHQvlTLqcQLRDQ~~ah-----------reLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 19 QQLHHQVLTLQCQLRDQGSAH-----------RELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 346779999999998775543 45677777777777777788777776666655555556666655543
No 368
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.28 E-value=7.4e+02 Score=23.39 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 002440 526 DYYTNALAAAK 536 (921)
Q Consensus 526 ~~~~~~L~aAK 536 (921)
..|...+..|+
T Consensus 54 ~e~~~~l~~a~ 64 (132)
T PF00430_consen 54 AEYEEKLAEAR 64 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 369
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.26 E-value=1.1e+03 Score=26.49 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002440 645 AVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (921)
Q Consensus 645 ~iE~sL~~RL~eaEk~~~eA~eREre~~Erl~~lksri~~LEsQls~lR~E~~qL~ 700 (921)
.+++.|..|+-.++.-++.+-. -...+|..+.+|+..||-+..+|+
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k----------~~~~qv~~in~qlErLRL~krrlQ 206 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDK----------MVEQQVRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777766665443321 113567788889988887776654
No 370
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.14 E-value=5.2e+02 Score=23.09 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002440 650 LNLRLQEAEAKAAASEE 666 (921)
Q Consensus 650 L~~RL~eaEk~~~eA~e 666 (921)
|..||.++|.+++=..+
T Consensus 2 le~Ri~~LE~~la~qe~ 18 (69)
T PF04102_consen 2 LEERIEELEIKLAFQED 18 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444333
Done!