Query 002440
Match_columns 921
No_of_seqs 121 out of 128
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 16:44:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002440.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1164-1167//hhsearch_pdb/002440hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 62.2 10.9 318 337-691 852-1169(1184)
2 1c1g_A Tropomyosin; contractIl 1.0 1 1 37.9 44.6 15 345-359 2-16 (284)
3 2v71_A Nuclear distribution pr 1.0 1 1 35.6 19.6 126 568-697 22-154 (189)
4 3o0z_A RHO-associated protein 1.0 1 1 33.5 22.1 132 618-768 4-135 (168)
5 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 31.8 18.6 27 592-618 925-951 (1080)
6 2efr_A General control protein 1.0 1 1 31.0 21.6 94 576-698 58-151 (155)
7 3o0z_A RHO-associated protein 1.0 1 1 30.9 19.3 123 564-690 7-135 (168)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 29.8 32.5 27 512-538 1906-1932(3245)
9 3na7_A HP0958; flagellar bioge 1.0 1 1 26.8 23.9 176 440-636 13-188 (256)
10 3na7_A HP0958; flagellar bioge 1.0 1 1 26.4 22.3 159 342-505 11-171 (256)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=62.23 Aligned_cols=318 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72018999999999999999999999999875999999996679999999998601175888889999999999999999
Q 002440 337 SADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKV 416 (921)
Q Consensus 337 s~ds~~eleKL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eaei~~LkeEytqRIaALErKL 416 (921)
.....-++..|.+++..+...|......+......+..|..+...|...+......- .++......+..++..++.++
T Consensus 852 ~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l--~~~e~~l~~l~~~~~~Le~~l 929 (1184)
T 1i84_S 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY--AEAEEMRVRLAAKKQELEEIL 929 (1184)
T ss_dssp CCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 357799999999999999999999999999999999999999999999999999999--999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998789999986121289998644689999999972673499999999999999998888999999886788869858
Q 002440 417 YALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKV 496 (921)
Q Consensus 417 Q~L~KERDaLRke~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~etiIKKLRakikE~Eee~~~Lk~KlE~E~s~l 496 (921)
..+..+.+ .....+.+-...+..+-.+-+.|.+..-+.+..+.+|+..+...+..+..+...+......+
T Consensus 930 ~ele~ele----------e~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l 999 (1184)
T 1i84_S 930 HEMEARIE----------EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999 (1184)
T ss_dssp HHHHHHHH----------HHHHC---------------------------------------------------------
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999----------99999999999898899999999999999998888889999999999999999888789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98887359999999999999998985437999999999999999999999899999999999998899999999999999
Q 002440 497 ESIKRDKTATEKLLQETIEKHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELR 576 (921)
Q Consensus 497 e~~kr~~~a~EK~lqE~lEk~qkEL~a~k~~~~~~L~aAKe~a~~AEarA~~Ea~~~Lek~lkEaeEkEe~L~~qI~DLR 576 (921)
..+...... ++..+..++..+......+. .+...+. ........++..+......-..+...+..+.
T Consensus 1000 ~~l~~e~~~----le~~i~~l~~~l~~~e~k~~-~lek~~~--------~le~el~ele~~le~~e~~~~ele~~~~~le 1066 (1184)
T 1i84_S 1000 NKLTKERKL----LEERVSDLTTNLAEEEEKAK-NLTKLKN--------KHESMISELEVRLKKEEKSRQELEKIKRKLE 1066 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999----99999999999999999999-9999999--------9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998622896533789989999999999999999999999999999
Q 002440 577 QTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (921)
Q Consensus 577 ekL~Raee~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssvseATrPLLRQIEtLQsq~a~asesWe~iEksL~~RL~e 656 (921)
..+....+.. ..+..++..|+.++...+.+.+.+...+.+....+ .++..+-...+.--..|...|.+
T Consensus 1067 ~el~~l~~el----~el~~el~~le~~l~~le~el~~l~~~le~l~~~~--------~~le~~l~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S 1067 GESSDLHEQI----AELQAQIAELKAQLAKKEEELQAALARLEDETSQK--------NNALKKIRELESHISDLQEDLES 1134 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999----99999999999999999999999999999999889--------87899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998999999888688889998887
Q 002440 657 AEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (921)
Q Consensus 657 aEk~~~eA~eRERe~~Ekl~~lksri~~LEsQls~ 691 (921)
.+.....+......+..++..++.+|..+...+..
T Consensus 1135 ~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999999999987667999
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=37.86 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q 002440 345 EKLKREMKMMETALQ 359 (921)
Q Consensus 345 eKL~~ei~~le~~l~ 359 (921)
+.|++.|..|...+.
T Consensus 2 ~~~~~~~~~l~~~~~ 16 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKE 16 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 378999999887688
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=35.57 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999986228965337-------8998999999999999
Q 002440 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRP-------LLRQIEAIQETTARRA 640 (921)
Q Consensus 568 L~~qI~DLRekL~Raee~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssvseATrP-------LLRQIEtLQsq~a~as 640 (921)
+.+++.+|+..|.--.+...-.|.+|-.++..++.|+.....++..|..-+-..-.+ ...+|-+||.....
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~-- 99 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ-- 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999999999999999998999999999999999988999999999899999999999999988899999999999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999998999999888688889998887899999
Q 002440 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (921)
Q Consensus 641 esWe~iEksL~~RL~eaEk~~~eA~eRERe~~Ekl~~lksri~~LEsQls~lR~E~~ 697 (921)
....-.+|..+|.++|-.-|...+.+|....-+..+..+++.+-..++.+-.|+.
T Consensus 100 --l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 100 --TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --9999999999999999971288899989996599999898899999998987898
No 4
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.53 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89653378998999999999999999999999999999999999999999998999999888688889998887899999
Q 002440 618 VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (921)
Q Consensus 618 vseATrPLLRQIEtLQsq~a~asesWe~iEksL~~RL~eaEk~~~eA~eRERe~~Ekl~~lksri~~LEsQls~lR~E~~ 697 (921)
+.+-..-|=||++-++.-|..-+++-+.+-++- +++.+....+...-|++.++ +..|+..-..|..+..
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~----tEl~k~~~~~E~~~rELq~~-------~~~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSH----TEMSKSISQLESLNRELQER-------NRILENSKSQTDKDYY 72 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_conf 248889999999999999998678999999889----99998899899997899999-------9999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999839999999999986986997799999999999999999999999999999999886
Q 002440 698 QLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEALMHRELLQQEIEREKT 768 (921)
Q Consensus 698 qL~~qLE~Er~r~~~~rqe~~aakee~~~qE~r~~qLEeel~~l~~k~~~~l~e~k~~~~llq~qlE~EK~ 768 (921)
.|+.+|+.||.-.. .+.+.....++++..|+.+++.++.++.+...+.+.--+-+ ..+|.|++
T Consensus 73 ~LQa~L~qEr~~r~-------q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl-~~lEKe~a 135 (168)
T 3o0z_A 73 QLQAILEAERRDRG-------HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML-NHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999998887-------77789999999999999999999998999999999999998-99998997
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999986228
Q 002440 592 MLRRDIEDLQRRYQASERRCEELVTQV 618 (921)
Q Consensus 592 eLR~EIsdLeqRLEeAE~RaEELSssv 618 (921)
.|...+.+|+.|+++.+.++.+|....
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp --------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=30.99 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999862289653378998999999999999999999999999999
Q 002440 576 RQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQ 655 (921)
Q Consensus 576 RekL~Raee~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssvseATrPLLRQIEtLQsq~a~asesWe~iEksL~~RL~ 655 (921)
.-.|...+..+..||+.+...|..|..+|.+|+.|++.+-.+| .+|=+.|.-|-.
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv----~kLEk~id~lEd--------------------- 112 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV----TKLEKSIDDLED--------------------- 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---------------------
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---------------------
T ss_conf 1030334567899899999999999999999999899999789----999989999999---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999989999998886888899988878999999
Q 002440 656 EAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (921)
Q Consensus 656 eaEk~~~eA~eRERe~~Ekl~~lksri~~LEsQls~lR~E~~q 698 (921)
.+...-.+-..+.+.+..+...++.+.+.+--+-.+..+
T Consensus 113 ----~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 113 ----ELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf ----999999989999999999999998646306888779988
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=30.94 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999986228---9653378998999999999999
Q 002440 564 RETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQV---PESTRPLLRQIEAIQETTARRA 640 (921)
Q Consensus 564 kEe~L~~qI~DLRekL~Raee~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssv---seATrPLLRQIEtLQsq~a~as 640 (921)
+...|..|+.++..+|+...+.+.+ ||.-..+|...+...+.-+-||-.-+ ...---|=+++-.||+++..-.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~r----lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVR----LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999986789999----998899999889989999789999999999889999999999999999999
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999---999999999999999999999899999988868888999888
Q 002440 641 EAWAAVER---SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (921)
Q Consensus 641 esWe~iEk---sL~~RL~eaEk~~~eA~eRERe~~Ekl~~lksri~~LEsQls 690 (921)
.+|....- .|..|+..++..++..-.++.-+....-.+..+|+.+|-.-+
T Consensus 83 ~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 83 RDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877778999999999999999999999899999999999999899998997
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999989854379999999999999
Q 002440 512 ETIEKHQVELGEQKDYYTNALAAAKEA 538 (921)
Q Consensus 512 E~lEk~qkEL~a~k~~~~~~L~aAKe~ 538 (921)
..+.+-+.++..+...|...|.+-.++
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et 1932 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDT 1932 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999889999999
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=26.76 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64468999999997267349999999999999999888899999988678886985898887359999999999999998
Q 002440 440 LKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQV 519 (921)
Q Consensus 440 LaEKDEqIa~LMEEGEKLSKkQlq~etiIKKLRakikE~Eee~~~Lk~KlE~E~s~le~~kr~~~a~EK~lqE~lEk~qk 519 (921)
|.+-|-.|..|...-..|-.........+..++..+......+..+......-...+.....+....++.+.... ..+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~~k 90 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--SER 90 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHH
T ss_conf 999999999999999875899999999999999999999999999999999999789999999999999987258--999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98543799999999999999999999989999999999999889999999999999999999999999999999999999
Q 002440 520 ELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIED 599 (921)
Q Consensus 520 EL~a~k~~~~~~L~aAKe~a~~AEarA~~Ea~~~Lek~lkEaeEkEe~L~~qI~DLRekL~Raee~Aa~rEdeLR~EIsd 599 (921)
++.++...+. ....-...++..+.++.++.+.+...+..+...+.............+...+..
T Consensus 91 E~~aL~kEie----------------~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e 154 (256)
T 3na7_A 91 ELRSLNIEED----------------IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN 154 (256)
T ss_dssp HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999----------------999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999986228965337899899999999
Q 002440 600 LQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETT 636 (921)
Q Consensus 600 LeqRLEeAE~RaEELSssvseATrPLLRQIEtLQsq~ 636 (921)
+...+.....+-+++..+++. +||..-+.+-...
T Consensus 155 ~~~e~~~l~~~r~~l~~~i~~---~lL~~Yerir~~~ 188 (256)
T 3na7_A 155 IKETQQIIFKKKEDLVEKTEP---KIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHC
T ss_conf 999999999999998856999---9999999999737
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=26.41 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999999999999999999999875999999996679999999998601175888889999999999999999999--
Q 002440 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL-- 419 (921)
Q Consensus 342 ~eleKL~~ei~~le~~l~~a~rq~qsks~eiA~L~e~NdqLk~eie~lk~ks~eaei~~LkeEytqRIaALErKLQ~L-- 419 (921)
++|..+-.+|..+...+......+..+..+++.|...-..+...+..+...- ..++.--+....||...+.++...
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~--~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV--SKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999987589999999999999999999999999999999--99997899999999999999872589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98789999986121289998644689999999972673499999999999999998888999999886788869858988
Q 002440 420 TKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESI 499 (921)
Q Consensus 420 ~KERDaLRke~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~etiIKKLRakikE~Eee~~~Lk~KlE~E~s~le~~ 499 (921)
.||.++|.+++. .....+..-++.|..+|+.=+.+....-.....+..++..+.+...++..-...+..+...+...
T Consensus 89 ~kE~~aL~kEie---~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 89 ERELRSLNIEED---IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999---99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 873599
Q 002440 500 KRDKTA 505 (921)
Q Consensus 500 kr~~~a 505 (921)
......
T Consensus 166 r~~l~~ 171 (256)
T 3na7_A 166 KEDLVE 171 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999885
Done!