Query 002440
Match_columns 921
No_of_seqs 121 out of 128
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 16:48:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002440.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1164-1167//hhsearch_scop/002440hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a5 a.24.9.1 (A:489-646) V 8.3 37 0.0027 7.9 5.1 69 564-634 59-127 (158)
2 d1qvra2 c.37.1.20 (A:149-535) 6.3 52 0.0038 6.9 8.4 56 407-464 253-308 (387)
3 d1hcia4 a.7.1.1 (A:633-746) al 4.1 90 0.0066 5.2 8.7 70 584-660 40-109 (114)
4 d1yzma1 a.2.19.1 (A:456-501) F 3.9 96 0.007 5.0 2.7 15 624-638 3-17 (46)
5 d2f23a1 a.2.1.1 (A:3-77) GreA 2.7 1.5E+02 0.011 3.8 6.1 26 715-740 44-69 (75)
6 d2imja1 d.17.4.23 (A:5-159) Hy 2.7 1.5E+02 0.011 3.7 1.2 15 7-22 4-18 (155)
7 d1s35a1 a.7.1.1 (A:1063-1168) 2.7 1.5E+02 0.011 3.7 10.9 44 592-635 43-87 (106)
8 d1grja1 a.2.1.1 (A:2-79) GreA 2.7 1.5E+02 0.011 3.6 7.1 62 679-740 7-70 (78)
9 d1vf6a_ a.194.1.1 (A:) Associa 2.6 1.6E+02 0.011 3.6 2.5 15 624-638 34-48 (58)
10 d2j0pa1 e.62.1.1 (A:4-341) Hem 2.6 1.3E+02 0.0093 4.2 -0.5 10 61-70 239-248 (338)
No 1
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.32 E-value=37 Score=7.93 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999862289653378998999999
Q 002440 564 RETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQE 634 (921)
Q Consensus 564 kEe~L~~qI~DLRekL~Raee~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssvseATrPLLRQIEtLQs 634 (921)
.-..|..++.+||..=.-....+...=..+..-+.+|.++++.+-.+ ..+....++|.||.+=|++-++
T Consensus 59 el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Avv~--~v~d~f~dt~tpl~~l~~Aa~a 127 (158)
T d1st6a5 59 RVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQ--EVSDVFSDTTTPIKLLAVAATA 127 (158)
T ss_dssp HHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSSCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999987589999899999999999999999999999999--9999998401699999998748
No 2
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=6.35 E-value=52 Score=6.87 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987899999861212899986446899999999726734999999
Q 002440 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQ 464 (921)
Q Consensus 407 qRIaALErKLQ~L~KERDaLRke~ak~s~aaa~LaEKDEqIa~LMEEGEKLSKkQlq~ 464 (921)
..|+.+++++-.+..|+.+|+++.. .+....+.+.+..|..|.++=..|..+-.+.
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d--~~s~~rl~~le~el~~lee~~~~L~~~w~~e 308 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKD--PDSQERLKAIEAEIAKLTEEIAKLRAEWERE 308 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSS--HHHHSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999999874014--5788887653323567999999999999888
No 3
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.10 E-value=90 Score=5.22 Aligned_cols=70 Identities=10% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999986228965337899899999999999999999999999999999999
Q 002440 584 QQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAK 660 (921)
Q Consensus 584 e~Aa~rEdeLR~EIsdLeqRLEeAE~RaEELSssvseATrPLLRQIEtLQsq~a~asesWe~iEksL~~RL~eaEk~ 660 (921)
+....+-..|..||...+.+++.....++.+....+....-.-..++.|+ ..|+.+-..+..|...++.+
T Consensus 40 e~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~-------~~W~~L~~~~~~R~~~Le~~ 109 (114)
T d1hcia4 40 EDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIR-------VGWELLLTTIARTINEVETQ 109 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987999999999999987728963788999999999-------99999999999999999998
No 4
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=96 Score=5.04 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789989999999999
Q 002440 624 PLLRQIEAIQETTAR 638 (921)
Q Consensus 624 PLLRQIEtLQsq~a~ 638 (921)
|||-||+.+..=...
T Consensus 3 PllqQi~~ik~yI~Q 17 (46)
T d1yzma1 3 PLLQQIHNITSFIRQ 17 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 089999999999999
No 5
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.75 E-value=1.5e+02 Score=3.75 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998698699779999999
Q 002440 715 QEYLAAKEEADTQEGRANQLEEEIKE 740 (921)
Q Consensus 715 qe~~aakee~~~qE~r~~qLEeel~~ 740 (921)
.+|.+|+++....++|+..|+..|.+
T Consensus 44 aeY~aAke~q~~~e~rI~eLe~~L~~ 69 (75)
T d2f23a1 44 SGLEAAKQEKARIEARIDSLEDILSR 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 47999999999999999999998701
No 6
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=2.74 E-value=1.5e+02 Score=3.73 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.5
Q ss_pred CCCCCCCCCHHHHHHH
Q ss_conf 8889998861455422
Q 002440 7 KVSLGNFPDLAGAVNK 22 (921)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (921)
+||||||.. +.|+.|
T Consensus 4 rpPlPPFt~-etA~~K 18 (155)
T d2imja1 4 RPPLPPFTR-ESAIEK 18 (155)
T ss_dssp CSSCSSCCH-HHHHHH
T ss_pred CCCCCCCCH-HHHHHH
T ss_conf 988888898-999999
No 7
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=1.5e+02 Score=3.73 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHH
Q ss_conf 999999999999999999999986228965337899-89999999
Q 002440 592 MLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLR-QIEAIQET 635 (921)
Q Consensus 592 eLR~EIsdLeqRLEeAE~RaEELSssvseATrPLLR-QIEtLQsq 635 (921)
.|..+|..-+.++......++.+....+....+-++ +|.+|+..
T Consensus 43 ~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~ 87 (106)
T d1s35a1 43 GIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTG 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999888878999999999999998766980099999999999999
No 8
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.67 E-value=1.5e+02 Score=3.64 Aligned_cols=62 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8688889998887899-9999999999999999-983999999999998698699779999999
Q 002440 679 LSRINVLEAQISCLRA-EQTQLTKSLEKERQRA-AENRQEYLAAKEEADTQEGRANQLEEEIKE 740 (921)
Q Consensus 679 ksri~~LEsQls~lR~-E~~qL~~qLE~Er~r~-~~~rqe~~aakee~~~qE~r~~qLEeel~~ 740 (921)
.....-|+..+..|+. +.-.....+...|.-- ...-.+|.+|+++....++|+..|+..|.+
T Consensus 7 ~eg~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~ 70 (78)
T d1grja1 7 LRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSN 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999988337999999999998488633377899999999999999999999827
No 9
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.62 E-value=1.6e+02 Score=3.58 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789989999999999
Q 002440 624 PLLRQIEAIQETTAR 638 (921)
Q Consensus 624 PLLRQIEtLQsq~a~ 638 (921)
||+-||=+||.....
T Consensus 34 PLF~qiL~lQ~Siqq 48 (58)
T d1vf6a_ 34 PLFNQILTLQQSIKQ 48 (58)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 789999999999999
No 10
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia enterocolitica [TaxId: 630]}
Probab=2.60 E-value=1.3e+02 Score=4.17 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=0.0
Q ss_pred CHHHHCCCCC
Q ss_conf 0443236689
Q 002440 61 PVMSFMGHKS 70 (921)
Q Consensus 61 ~~~~~~~~~~ 70 (921)
|+|-|.||.|
T Consensus 239 pIMiFVGN~G 248 (338)
T d2j0pa1 239 EIMIFVGNRG 248 (338)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEECCCC
T ss_conf 6799984883
Done!