Query 002441
Match_columns 921
No_of_seqs 1653 out of 3898
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6E-161 1E-165 1263.0 64.7 837 10-869 80-965 (966)
2 COG3914 Spy Predicted O-linked 100.0 1E-104 3E-109 843.2 50.7 548 283-850 48-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 1.3E-97 3E-102 806.6 27.6 351 488-846 1-468 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 2.7E-44 5.9E-49 380.5 37.5 420 27-462 27-480 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 6.7E-33 1.4E-37 329.9 53.7 382 48-437 127-577 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-31 5.9E-36 334.0 56.8 405 46-461 463-894 (899)
7 PRK11447 cellulose synthase su 100.0 2.8E-30 6E-35 326.9 56.2 412 44-462 177-735 (1157)
8 PRK11447 cellulose synthase su 100.0 1.6E-30 3.4E-35 329.2 51.6 367 53-430 274-739 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 9.7E-30 2.1E-34 319.9 56.1 387 50-453 433-819 (899)
10 PRK15174 Vi polysaccharide exp 100.0 2.1E-29 4.7E-34 298.5 50.4 362 47-435 41-407 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 4.9E-29 1.1E-33 296.8 49.9 363 82-461 127-565 (615)
12 PRK15174 Vi polysaccharide exp 100.0 8.2E-29 1.8E-33 293.6 46.0 344 80-437 40-387 (656)
13 PRK15179 Vi polysaccharide bio 100.0 1.5E-28 3.3E-33 285.7 46.6 527 284-843 70-692 (694)
14 KOG0547 Translocase of outer m 100.0 6.3E-28 1.4E-32 251.3 38.8 378 48-434 115-569 (606)
15 PRK10049 pgaA outer membrane p 100.0 3.9E-27 8.5E-32 285.3 48.9 409 46-466 13-455 (765)
16 PRK10049 pgaA outer membrane p 100.0 3.7E-27 8E-32 285.5 45.1 381 44-439 45-464 (765)
17 KOG2002 TPR-containing nuclear 100.0 1.6E-26 3.5E-31 259.5 39.4 395 46-447 305-761 (1018)
18 PRK09782 bacteriophage N4 rece 100.0 3E-25 6.5E-30 268.1 52.8 157 43-203 39-228 (987)
19 KOG2002 TPR-containing nuclear 100.0 1.2E-25 2.6E-30 252.5 42.7 387 44-441 160-569 (1018)
20 KOG0548 Molecular co-chaperone 100.0 1.1E-25 2.4E-30 239.0 38.4 389 49-446 3-470 (539)
21 PRK09782 bacteriophage N4 rece 99.9 7.9E-24 1.7E-28 255.9 46.1 370 52-437 317-712 (987)
22 KOG0547 Translocase of outer m 99.9 1E-23 2.2E-28 220.2 34.7 359 83-457 116-556 (606)
23 KOG1173 Anaphase-promoting com 99.9 3.3E-23 7.1E-28 220.8 37.2 389 46-442 47-529 (611)
24 KOG1155 Anaphase-promoting com 99.9 1.2E-22 2.6E-27 211.1 39.6 368 47-435 163-540 (559)
25 KOG1126 DNA-binding cell divis 99.9 1.9E-24 4.1E-29 235.3 27.4 307 117-437 318-626 (638)
26 PRK14574 hmsH outer membrane p 99.9 7.5E-22 1.6E-26 234.1 50.0 394 44-445 30-493 (822)
27 KOG0624 dsRNA-activated protei 99.9 9.2E-23 2E-27 203.7 35.3 326 45-370 35-377 (504)
28 KOG1155 Anaphase-promoting com 99.9 1.1E-21 2.4E-26 203.9 42.5 374 47-432 77-496 (559)
29 KOG1126 DNA-binding cell divis 99.9 7.7E-24 1.7E-28 230.6 27.7 306 84-403 319-626 (638)
30 KOG2076 RNA polymerase III tra 99.9 4.6E-22 1E-26 222.8 41.3 377 46-429 137-553 (895)
31 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.5E-27 227.0 39.6 308 83-430 36-346 (389)
32 PRK11788 tetratricopeptide rep 99.9 5.9E-22 1.3E-26 224.0 39.6 302 46-395 33-345 (389)
33 KOG2003 TPR repeat-containing 99.9 6.4E-22 1.4E-26 203.7 32.9 386 49-442 238-700 (840)
34 KOG2003 TPR repeat-containing 99.9 1.7E-22 3.8E-27 207.9 28.6 410 47-468 200-690 (840)
35 PRK14574 hmsH outer membrane p 99.9 3E-20 6.4E-25 220.6 47.2 374 52-439 72-521 (822)
36 KOG0624 dsRNA-activated protei 99.9 6.7E-21 1.5E-25 190.5 32.8 327 78-440 34-379 (504)
37 KOG4162 Predicted calmodulin-b 99.9 2.7E-20 5.9E-25 205.3 39.8 390 46-437 321-789 (799)
38 KOG1173 Anaphase-promoting com 99.9 2.9E-20 6.2E-25 198.5 34.2 350 47-410 140-531 (611)
39 KOG0495 HAT repeat protein [RN 99.9 3E-19 6.6E-24 192.3 41.7 372 49-439 517-888 (913)
40 KOG2076 RNA polymerase III tra 99.9 2.8E-19 6E-24 200.7 42.4 338 82-433 139-514 (895)
41 KOG0495 HAT repeat protein [RN 99.9 1.2E-18 2.5E-23 187.8 45.0 380 60-456 418-869 (913)
42 KOG0548 Molecular co-chaperone 99.9 1.6E-19 3.4E-24 192.6 34.5 365 47-427 35-485 (539)
43 KOG1174 Anaphase-promoting com 99.9 5.2E-19 1.1E-23 181.2 36.6 384 43-442 92-511 (564)
44 PLN03218 maturation of RBCL 1; 99.8 2E-16 4.4E-21 193.2 55.4 395 46-462 368-778 (1060)
45 TIGR00540 hemY_coli hemY prote 99.8 5.9E-18 1.3E-22 190.9 38.3 302 119-431 87-399 (409)
46 KOG1127 TPR repeat-containing 99.8 1.6E-18 3.4E-23 195.0 31.1 375 61-442 471-890 (1238)
47 KOG1129 TPR repeat-containing 99.8 2.8E-18 6E-23 170.9 29.4 382 51-442 7-469 (478)
48 TIGR00540 hemY_coli hemY prote 99.8 1.4E-17 3E-22 187.8 39.2 304 47-397 83-399 (409)
49 PF13429 TPR_15: Tetratricopep 99.8 1.6E-20 3.5E-25 201.3 14.0 261 162-431 13-277 (280)
50 PRK10747 putative protoheme IX 99.8 3.3E-17 7.2E-22 183.7 39.4 303 119-432 87-391 (398)
51 KOG1156 N-terminal acetyltrans 99.8 1.8E-16 4E-21 172.1 42.3 376 47-437 6-440 (700)
52 PLN03081 pentatricopeptide (PP 99.8 1.7E-17 3.7E-22 200.9 37.5 400 46-465 121-555 (697)
53 PLN03218 maturation of RBCL 1; 99.8 1.4E-15 3E-20 185.9 53.8 362 55-434 413-786 (1060)
54 KOG1174 Anaphase-promoting com 99.8 1.9E-17 4E-22 170.0 30.8 310 87-411 203-514 (564)
55 KOG4162 Predicted calmodulin-b 99.8 6.2E-17 1.3E-21 179.1 36.7 349 47-402 356-788 (799)
56 PRK12370 invasion protein regu 99.8 1.4E-17 2.9E-22 195.0 33.6 248 98-362 277-534 (553)
57 PLN03081 pentatricopeptide (PP 99.8 1.5E-16 3.3E-21 192.6 43.4 369 47-434 86-493 (697)
58 PF13429 TPR_15: Tetratricopep 99.8 1.2E-19 2.6E-24 194.5 14.3 261 51-361 11-275 (280)
59 PLN03077 Protein ECB2; Provisi 99.8 2.5E-16 5.4E-21 195.5 45.4 389 48-459 253-712 (857)
60 PRK12370 invasion protein regu 99.8 1.4E-17 3E-22 194.9 32.3 250 171-430 275-534 (553)
61 KOG1125 TPR repeat-containing 99.8 1.8E-18 4E-23 185.9 21.6 240 161-400 289-530 (579)
62 KOG1129 TPR repeat-containing 99.8 2.2E-18 4.8E-23 171.6 20.3 245 160-412 226-473 (478)
63 KOG0550 Molecular chaperone (D 99.8 7.5E-18 1.6E-22 173.5 24.7 299 42-366 43-353 (486)
64 KOG1125 TPR repeat-containing 99.8 1.4E-18 3.1E-23 186.8 20.2 266 47-319 284-561 (579)
65 PRK10747 putative protoheme IX 99.8 2.9E-16 6.4E-21 176.1 38.8 297 48-397 84-390 (398)
66 COG3063 PilF Tfp pilus assembl 99.8 2.7E-17 5.9E-22 157.8 25.3 215 42-261 29-243 (250)
67 COG2956 Predicted N-acetylgluc 99.8 1.4E-15 2.9E-20 152.3 33.9 321 163-503 41-373 (389)
68 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-16 3.6E-21 170.5 29.6 232 128-374 38-277 (296)
69 KOG1127 TPR repeat-containing 99.8 1.6E-16 3.5E-21 179.0 28.9 388 48-453 399-865 (1238)
70 KOG1156 N-terminal acetyltrans 99.8 2.1E-15 4.5E-20 164.0 35.1 348 82-439 7-408 (700)
71 TIGR02521 type_IV_pilW type IV 99.8 4E-16 8.7E-21 162.2 29.0 207 44-255 27-233 (234)
72 KOG0550 Molecular chaperone (D 99.8 3.4E-17 7.3E-22 168.8 20.0 278 156-434 48-353 (486)
73 KOG2376 Signal recognition par 99.8 1.9E-14 4.2E-19 155.0 41.6 392 47-449 11-505 (652)
74 PRK11189 lipoprotein NlpI; Pro 99.8 6E-16 1.3E-20 166.2 30.1 240 61-346 39-283 (296)
75 PLN03077 Protein ECB2; Provisi 99.8 3.9E-15 8.5E-20 184.8 41.8 359 46-430 321-719 (857)
76 KOG1840 Kinesin light chain [C 99.8 5.8E-16 1.3E-20 172.1 30.1 244 187-430 195-478 (508)
77 KOG1840 Kinesin light chain [C 99.7 1.5E-15 3.4E-20 168.8 31.9 241 157-397 199-479 (508)
78 COG3063 PilF Tfp pilus assembl 99.7 8.1E-16 1.8E-20 147.7 24.7 205 192-437 36-242 (250)
79 TIGR02521 type_IV_pilW type IV 99.7 1.2E-15 2.6E-20 158.6 28.5 202 191-433 31-234 (234)
80 KOG1915 Cell cycle control pro 99.7 6.4E-13 1.4E-17 139.1 45.8 376 47-432 72-501 (677)
81 COG2956 Predicted N-acetylgluc 99.7 1.2E-14 2.6E-19 145.7 31.4 298 120-428 39-344 (389)
82 PRK15490 Vi polysaccharide bio 99.7 2.1E-15 4.5E-20 167.8 28.1 270 555-844 269-575 (578)
83 PLN02789 farnesyltranstransfer 99.7 2E-15 4.4E-20 161.3 26.6 210 201-415 47-268 (320)
84 PLN02789 farnesyltranstransfer 99.7 1.1E-14 2.3E-19 155.8 28.0 212 128-346 49-267 (320)
85 KOG1915 Cell cycle control pro 99.7 2E-12 4.3E-17 135.6 41.9 386 45-441 104-545 (677)
86 cd05804 StaR_like StaR_like; a 99.7 1.6E-13 3.5E-18 153.0 36.1 213 78-297 2-217 (355)
87 cd05804 StaR_like StaR_like; a 99.7 2.2E-13 4.8E-18 151.9 35.3 309 112-432 2-337 (355)
88 KOG3785 Uncharacterized conser 99.7 5.5E-13 1.2E-17 134.7 32.7 364 56-426 30-452 (557)
89 KOG3785 Uncharacterized conser 99.6 2.4E-12 5.2E-17 130.2 33.8 356 92-458 32-448 (557)
90 TIGR03302 OM_YfiO outer membra 99.6 1.2E-13 2.5E-18 144.2 24.1 191 42-256 27-234 (235)
91 KOG1130 Predicted G-alpha GTPa 99.6 4.7E-14 1E-18 145.0 19.3 293 123-419 24-372 (639)
92 KOG2376 Signal recognition par 99.6 8.7E-12 1.9E-16 134.8 35.5 332 84-426 14-400 (652)
93 PF12569 NARP1: NMDA receptor- 99.6 1.8E-11 4E-16 138.3 38.8 249 48-296 4-335 (517)
94 COG3071 HemY Uncharacterized e 99.6 6E-11 1.3E-15 123.4 37.2 299 122-431 90-390 (400)
95 PLN02949 transferase, transfer 99.5 7.6E-13 1.6E-17 150.0 24.7 176 660-847 269-459 (463)
96 PRK04841 transcriptional regul 99.5 3.1E-11 6.7E-16 152.0 41.2 384 51-435 344-764 (903)
97 PRK14720 transcript cleavage f 99.5 3E-12 6.4E-17 150.5 28.6 288 77-438 26-313 (906)
98 KOG1130 Predicted G-alpha GTPa 99.5 1.8E-13 4E-18 140.7 16.1 270 161-431 21-344 (639)
99 TIGR03302 OM_YfiO outer membra 99.5 1.2E-12 2.5E-17 136.7 22.7 182 77-279 28-223 (235)
100 PRK15359 type III secretion sy 99.5 3E-13 6.5E-18 128.3 15.2 124 320-446 13-136 (144)
101 COG3071 HemY Uncharacterized e 99.5 2E-10 4.4E-15 119.5 36.7 297 47-361 83-388 (400)
102 cd03796 GT1_PIG-A_like This fa 99.5 1.5E-12 3.2E-17 147.4 22.6 268 556-847 78-370 (398)
103 TIGR03088 stp2 sugar transfera 99.5 5.3E-12 1.1E-16 141.9 25.8 173 656-845 191-373 (374)
104 PRK15359 type III secretion sy 99.5 7.4E-13 1.6E-17 125.6 15.5 127 286-415 13-139 (144)
105 PF12569 NARP1: NMDA receptor- 99.5 9.3E-11 2E-15 132.7 34.8 312 81-397 3-334 (517)
106 PLN02871 UDP-sulfoquinovose:DA 99.5 2.1E-12 4.5E-17 149.0 21.6 343 485-852 56-442 (465)
107 PRK15427 colanic acid biosynth 99.5 1.2E-12 2.6E-17 147.5 18.4 172 658-844 221-405 (406)
108 PRK04841 transcriptional regul 99.5 2.5E-10 5.4E-15 143.8 40.1 348 49-400 375-763 (903)
109 KOG4340 Uncharacterized conser 99.5 9.6E-11 2.1E-15 116.2 28.0 361 57-435 19-447 (459)
110 PRK10370 formate-dependent nit 99.4 4E-12 8.7E-17 127.2 18.6 153 274-437 24-179 (198)
111 KOG2047 mRNA splicing factor [ 99.4 2.5E-09 5.5E-14 116.7 39.7 378 47-430 101-614 (835)
112 cd03801 GT1_YqgM_like This fam 99.4 3.3E-12 7.2E-17 142.3 18.3 340 489-843 1-374 (374)
113 PRK14720 transcript cleavage f 99.4 2.7E-11 5.9E-16 142.5 25.8 219 186-443 26-264 (906)
114 cd03820 GT1_amsD_like This fam 99.4 9.4E-12 2E-16 137.6 20.0 319 489-839 1-347 (348)
115 cd03822 GT1_ecORF704_like This 99.4 1.6E-11 3.5E-16 137.2 21.8 336 489-843 1-366 (366)
116 KOG2047 mRNA splicing factor [ 99.4 3.1E-09 6.7E-14 116.0 37.3 359 63-433 83-581 (835)
117 cd03792 GT1_Trehalose_phosphor 99.4 7.1E-11 1.5E-15 132.5 25.7 335 489-844 1-371 (372)
118 PRK10370 formate-dependent nit 99.4 3.3E-11 7.2E-16 120.6 20.5 125 279-403 52-179 (198)
119 KOG3060 Uncharacterized conser 99.4 6.5E-10 1.4E-14 108.7 27.9 185 187-378 48-235 (289)
120 cd05844 GT1_like_7 Glycosyltra 99.4 9.6E-12 2.1E-16 139.4 17.6 160 667-840 198-366 (367)
121 cd04962 GT1_like_5 This family 99.4 2.1E-11 4.5E-16 137.0 19.9 175 654-845 192-371 (371)
122 KOG1128 Uncharacterized conser 99.4 3.1E-11 6.8E-16 133.8 20.0 226 188-435 395-620 (777)
123 COG5010 TadD Flp pilus assembl 99.4 9.2E-11 2E-15 116.0 20.8 176 244-427 52-227 (257)
124 KOG3060 Uncharacterized conser 99.4 2.1E-09 4.6E-14 105.2 29.7 164 88-258 58-224 (289)
125 TIGR03449 mycothiol_MshA UDP-N 99.4 2.9E-11 6.4E-16 137.4 20.1 206 627-846 186-403 (405)
126 cd03807 GT1_WbnK_like This fam 99.3 6.6E-11 1.4E-15 131.8 21.9 329 490-843 2-365 (365)
127 TIGR02552 LcrH_SycD type III s 99.3 2.7E-11 5.8E-16 114.4 15.8 119 321-439 4-122 (135)
128 cd03813 GT1_like_3 This family 99.3 2.5E-11 5.5E-16 140.1 18.4 172 658-843 292-475 (475)
129 PRK15484 lipopolysaccharide 1, 99.3 5.2E-11 1.1E-15 133.5 20.2 178 654-845 188-378 (380)
130 cd03811 GT1_WabH_like This fam 99.3 7.2E-11 1.6E-15 130.7 20.9 315 489-823 1-347 (353)
131 KOG0553 TPR repeat-containing 99.3 1.7E-11 3.6E-16 123.4 13.6 115 334-448 81-195 (304)
132 COG5010 TadD Flp pilus assembl 99.3 1.9E-10 4.1E-15 113.8 20.7 177 66-250 51-227 (257)
133 cd03806 GT1_ALG11_like This fa 99.3 2.1E-11 4.6E-16 138.0 16.3 169 657-836 235-418 (419)
134 cd03818 GT1_ExpC_like This fam 99.3 3.4E-11 7.4E-16 136.3 17.6 202 625-838 174-394 (396)
135 PRK15179 Vi polysaccharide bio 99.3 2.5E-10 5.3E-15 134.1 24.9 154 99-259 69-222 (694)
136 cd03805 GT1_ALG2_like This fam 99.3 4.9E-11 1.1E-15 135.0 18.6 171 655-837 207-391 (392)
137 cd03821 GT1_Bme6_like This fam 99.3 1.5E-10 3.3E-15 129.4 21.7 174 654-839 198-374 (375)
138 cd03812 GT1_CapH_like This fam 99.3 1.2E-10 2.6E-15 130.1 20.3 313 489-822 1-345 (358)
139 cd03799 GT1_amsK_like This is 99.3 2.1E-10 4.6E-15 127.8 22.3 327 489-837 1-354 (355)
140 KOG1128 Uncharacterized conser 99.3 1.4E-10 3E-15 128.8 19.4 217 160-398 401-617 (777)
141 KOG0553 TPR repeat-containing 99.3 4.3E-11 9.3E-16 120.5 14.1 120 153-272 77-196 (304)
142 cd04951 GT1_WbdM_like This fam 99.3 9.7E-11 2.1E-15 130.8 17.9 173 654-843 183-359 (360)
143 cd03798 GT1_wlbH_like This fam 99.3 9.8E-11 2.1E-15 130.8 17.7 325 500-844 14-376 (377)
144 TIGR02552 LcrH_SycD type III s 99.3 1.3E-10 2.8E-15 109.6 15.7 119 287-405 4-122 (135)
145 cd03817 GT1_UGDG_like This fam 99.3 9.2E-11 2E-15 131.3 16.8 172 655-844 198-373 (374)
146 PRK15363 pathogenicity island 99.3 1.5E-10 3.2E-15 107.3 14.7 105 328-432 28-133 (157)
147 PF04733 Coatomer_E: Coatomer 99.2 1.6E-10 3.4E-15 122.4 15.8 168 191-368 102-270 (290)
148 PRK09922 UDP-D-galactose:(gluc 99.2 1.7E-10 3.8E-15 128.5 16.5 165 659-846 180-357 (359)
149 PRK10307 putative glycosyl tra 99.2 3.1E-10 6.7E-15 129.2 18.6 201 627-846 193-409 (412)
150 PF04733 Coatomer_E: Coatomer 99.2 1.7E-10 3.8E-15 122.1 14.3 257 166-438 10-272 (290)
151 TIGR02149 glgA_Coryne glycogen 99.2 4.4E-10 9.4E-15 127.1 18.2 178 654-845 196-387 (388)
152 cd03795 GT1_like_4 This family 99.2 3.6E-10 7.8E-15 126.0 17.1 252 562-834 79-356 (357)
153 cd03808 GT1_cap1E_like This fa 99.2 2.1E-09 4.5E-14 119.4 22.9 169 656-839 185-358 (359)
154 TIGR02918 accessory Sec system 99.2 7.3E-10 1.6E-14 127.1 19.5 164 661-844 321-499 (500)
155 PRK15363 pathogenicity island 99.2 7.9E-10 1.7E-14 102.5 15.6 107 45-151 32-138 (157)
156 PLN02939 transferase, transfer 99.2 7.2E-10 1.6E-14 130.4 19.0 174 658-848 778-970 (977)
157 PRK10866 outer membrane biogen 99.2 8.1E-09 1.8E-13 106.8 24.8 183 44-250 28-237 (243)
158 cd03825 GT1_wcfI_like This fam 99.2 1E-09 2.2E-14 122.8 19.0 166 659-844 193-364 (365)
159 cd04949 GT1_gtfA_like This fam 99.2 8.6E-10 1.9E-14 123.9 18.2 158 661-836 206-370 (372)
160 TIGR03087 stp1 sugar transfera 99.2 1.1E-09 2.3E-14 124.0 18.8 162 660-843 225-395 (397)
161 cd03823 GT1_ExpE7_like This fa 99.1 4.5E-10 9.8E-15 125.0 15.2 259 556-843 86-358 (359)
162 cd03819 GT1_WavL_like This fam 99.1 3.9E-10 8.3E-15 125.7 14.2 258 556-825 68-348 (355)
163 cd04955 GT1_like_6 This family 99.1 2.7E-09 5.8E-14 119.3 20.8 159 667-843 203-363 (363)
164 cd03814 GT1_like_2 This family 99.1 9.5E-10 2.1E-14 122.7 17.1 165 657-843 195-364 (364)
165 cd04946 GT1_AmsK_like This fam 99.1 7.3E-10 1.6E-14 125.3 15.6 166 657-838 228-405 (407)
166 PLN02846 digalactosyldiacylgly 99.1 7.2E-10 1.6E-14 123.8 15.2 201 613-843 181-390 (462)
167 TIGR02470 sucr_synth sucrose s 99.1 1.4E-09 3E-14 127.6 17.9 179 658-847 549-752 (784)
168 cd03809 GT1_mtfB_like This fam 99.1 2.1E-09 4.6E-14 120.0 18.6 168 658-839 194-364 (365)
169 PLN00142 sucrose synthase 99.1 1.7E-09 3.6E-14 126.9 18.0 177 659-846 573-774 (815)
170 cd03802 GT1_AviGT4_like This f 99.1 2.8E-09 6E-14 117.8 18.8 313 489-843 2-335 (335)
171 KOG4340 Uncharacterized conser 99.1 2.2E-08 4.7E-13 99.8 22.5 282 127-425 21-333 (459)
172 KOG3617 WD40 and TPR repeat-co 99.1 1.3E-07 2.8E-12 105.7 30.9 325 59-428 739-1171(1416)
173 PLN02316 synthase/transferase 99.1 2.2E-09 4.7E-14 128.9 18.2 171 653-845 833-1034(1036)
174 cd03800 GT1_Sucrose_synthase T 99.1 4.9E-09 1.1E-13 118.8 20.5 174 656-839 217-397 (398)
175 COG4783 Putative Zn-dependent 99.1 2.8E-08 6E-13 106.6 24.1 155 79-257 303-457 (484)
176 TIGR02472 sucr_P_syn_N sucrose 99.1 2.4E-09 5.1E-14 122.6 16.9 173 658-842 247-438 (439)
177 TIGR02468 sucrsPsyn_pln sucros 99.1 2.6E-09 5.7E-14 127.8 17.6 179 657-848 477-674 (1050)
178 KOG1941 Acetylcholine receptor 99.1 5.3E-08 1.1E-12 99.6 24.1 248 157-432 83-361 (518)
179 PF13525 YfiO: Outer membrane 99.1 2E-08 4.2E-13 101.5 21.3 176 46-245 3-198 (203)
180 PLN02501 digalactosyldiacylgly 99.1 2.3E-09 5.1E-14 121.1 15.5 260 554-841 422-706 (794)
181 PLN03088 SGT1, suppressor of 99.1 3.6E-09 7.7E-14 116.4 16.8 109 49-157 3-111 (356)
182 COG4783 Putative Zn-dependent 99.0 2.1E-08 4.5E-13 107.6 21.5 156 297-452 303-458 (484)
183 KOG1941 Acetylcholine receptor 99.0 1.9E-08 4.1E-13 102.8 20.2 239 191-458 83-351 (518)
184 KOG1111 N-acetylglucosaminyltr 99.0 3.6E-09 7.8E-14 108.5 15.0 209 606-846 144-368 (426)
185 PRK10866 outer membrane biogen 99.0 5.4E-08 1.2E-12 100.6 23.4 175 80-275 30-228 (243)
186 PLN03088 SGT1, suppressor of 99.0 5.4E-09 1.2E-13 115.0 16.7 101 340-440 8-108 (356)
187 PF00534 Glycos_transf_1: Glyc 99.0 5.3E-09 1.2E-13 103.2 13.6 156 655-822 11-172 (172)
188 cd03816 GT1_ALG1_like This fam 99.0 1.1E-08 2.4E-13 116.1 17.6 153 657-823 230-399 (415)
189 PF13525 YfiO: Outer membrane 99.0 6.1E-08 1.3E-12 98.0 21.0 175 81-276 4-195 (203)
190 PF14938 SNAP: Soluble NSF att 99.0 3.5E-08 7.6E-13 105.4 19.9 182 232-443 42-237 (282)
191 PF14938 SNAP: Soluble NSF att 99.0 1.4E-08 3.1E-13 108.3 16.8 181 63-259 30-230 (282)
192 PRK00654 glgA glycogen synthas 99.0 1.8E-08 3.9E-13 116.1 18.6 162 658-847 281-465 (466)
193 COG4785 NlpI Lipoprotein NlpI, 99.0 3.3E-08 7.2E-13 94.2 16.7 197 156-364 64-267 (297)
194 PRK14098 glycogen synthase; Pr 99.0 1.7E-08 3.7E-13 116.1 18.1 170 657-846 305-487 (489)
195 KOG2053 Mitochondrial inherita 99.0 1.6E-05 3.4E-10 91.3 40.8 201 50-258 11-259 (932)
196 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.9E-08 4.2E-13 92.3 14.5 105 335-439 3-113 (119)
197 COG3898 Uncharacterized membra 98.9 6.1E-06 1.3E-10 85.8 32.8 296 122-430 90-391 (531)
198 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.8E-08 8.2E-13 90.3 14.9 105 48-152 2-112 (119)
199 KOG2300 Uncharacterized conser 98.9 4.3E-05 9.3E-10 81.8 38.4 386 47-438 6-521 (629)
200 PRK14099 glycogen synthase; Pr 98.9 5.7E-08 1.2E-12 111.7 19.0 174 658-847 294-481 (485)
201 COG4235 Cytochrome c biogenesi 98.9 4.7E-08 1E-12 99.8 15.9 122 316-437 138-262 (287)
202 TIGR02095 glgA glycogen/starch 98.9 3.9E-08 8.4E-13 113.9 17.7 160 658-844 290-472 (473)
203 cd03804 GT1_wbaZ_like This fam 98.9 3.2E-08 6.9E-13 110.1 16.4 152 659-838 197-350 (351)
204 PRK05749 3-deoxy-D-manno-octul 98.9 6.8E-08 1.5E-12 110.4 19.4 154 662-826 236-406 (425)
205 PRK13609 diacylglycerol glucos 98.9 6.6E-08 1.4E-12 108.8 18.9 261 556-843 94-370 (380)
206 CHL00033 ycf3 photosystem I as 98.9 4.9E-08 1.1E-12 95.7 15.5 124 59-182 10-138 (168)
207 KOG1070 rRNA processing protei 98.9 1.2E-06 2.5E-11 104.0 28.9 222 209-434 1442-1666(1710)
208 cd03794 GT1_wbuB_like This fam 98.9 4.4E-08 9.6E-13 110.1 17.4 169 655-838 216-393 (394)
209 COG0457 NrfG FOG: TPR repeat [ 98.9 8.1E-06 1.8E-10 84.0 33.2 228 130-400 37-268 (291)
210 PLN02605 monogalactosyldiacylg 98.9 1.3E-07 2.9E-12 106.1 20.8 264 556-840 90-377 (382)
211 cd00189 TPR Tetratricopeptide 98.9 3E-08 6.6E-13 86.1 12.2 99 336-434 2-100 (100)
212 PF13414 TPR_11: TPR repeat; P 98.9 1.1E-08 2.4E-13 83.6 8.4 67 367-433 2-69 (69)
213 COG0457 NrfG FOG: TPR repeat [ 98.8 5.1E-06 1.1E-10 85.5 30.8 224 204-434 36-268 (291)
214 PHA01633 putative glycosyl tra 98.8 6.9E-08 1.5E-12 103.8 16.5 96 659-768 148-253 (335)
215 CHL00033 ycf3 photosystem I as 98.8 7E-08 1.5E-12 94.7 15.3 105 334-438 35-156 (168)
216 PRK13608 diacylglycerol glucos 98.8 1.3E-07 2.9E-12 106.2 19.2 160 669-848 215-375 (391)
217 COG4785 NlpI Lipoprotein NlpI, 98.8 3.9E-07 8.4E-12 87.1 18.4 198 46-255 63-267 (297)
218 COG4235 Cytochrome c biogenesi 98.8 1.2E-07 2.6E-12 96.8 16.1 122 281-402 137-261 (287)
219 PRK02603 photosystem I assembl 98.8 1.1E-07 2.4E-12 93.6 15.5 119 298-436 33-154 (172)
220 PHA01630 putative group 1 glyc 98.8 7.4E-08 1.6E-12 104.9 15.4 160 660-844 143-330 (331)
221 KOG4648 Uncharacterized conser 98.8 2.8E-09 6E-14 107.9 3.9 108 50-157 99-206 (536)
222 KOG1070 rRNA processing protei 98.8 1.5E-06 3.2E-11 103.2 26.5 218 173-398 1440-1664(1710)
223 PRK10125 putative glycosyl tra 98.8 7.5E-08 1.6E-12 108.3 15.8 147 658-844 240-404 (405)
224 PF13414 TPR_11: TPR repeat; P 98.8 2.6E-08 5.5E-13 81.4 8.4 67 333-399 2-69 (69)
225 PRK10153 DNA-binding transcrip 98.8 2.3E-07 4.9E-12 106.3 18.9 142 295-437 332-488 (517)
226 cd00189 TPR Tetratricopeptide 98.8 7.8E-08 1.7E-12 83.5 11.8 99 50-148 2-100 (100)
227 PF09976 TPR_21: Tetratricopep 98.8 3.5E-07 7.6E-12 87.2 17.1 117 312-429 23-145 (145)
228 PRK10803 tol-pal system protei 98.8 3.4E-07 7.4E-12 95.3 18.2 107 46-152 140-253 (263)
229 PF13692 Glyco_trans_1_4: Glyc 98.8 1.4E-08 2.9E-13 95.8 7.2 129 659-808 2-135 (135)
230 PRK02603 photosystem I assembl 98.8 3.3E-07 7.2E-12 90.2 17.1 93 157-249 35-130 (172)
231 KOG3081 Vesicle coat complex C 98.8 4.1E-06 8.8E-11 83.2 24.0 167 192-368 109-276 (299)
232 COG4105 ComL DNA uptake lipopr 98.7 3E-06 6.5E-11 84.8 22.9 191 44-258 30-237 (254)
233 KOG2300 Uncharacterized conser 98.7 0.00013 2.9E-09 78.2 35.7 348 82-432 7-475 (629)
234 KOG0543 FKBP-type peptidyl-pro 98.7 2.7E-07 5.8E-12 97.5 15.8 73 370-442 259-331 (397)
235 KOG3617 WD40 and TPR repeat-co 98.7 1.1E-05 2.5E-10 90.7 28.9 185 49-253 758-995 (1416)
236 cd03791 GT1_Glycogen_synthase_ 98.7 1.8E-07 3.9E-12 108.8 16.0 160 657-843 294-475 (476)
237 PF12895 Apc3: Anaphase-promot 98.7 3.6E-08 7.7E-13 84.1 7.5 82 60-142 1-84 (84)
238 KOG1914 mRNA cleavage and poly 98.7 0.00098 2.1E-08 72.8 43.8 414 42-459 14-493 (656)
239 PF09976 TPR_21: Tetratricopep 98.7 7.3E-07 1.6E-11 84.9 17.0 87 53-139 16-108 (145)
240 COG3898 Uncharacterized membra 98.7 4.7E-05 1E-09 79.4 30.6 271 47-397 119-392 (531)
241 PF13432 TPR_16: Tetratricopep 98.7 6.1E-08 1.3E-12 78.1 7.8 65 52-116 1-65 (65)
242 PF12895 Apc3: Anaphase-promot 98.7 4.3E-08 9.4E-13 83.6 7.3 81 347-428 2-84 (84)
243 PF13432 TPR_16: Tetratricopep 98.7 5.2E-08 1.1E-12 78.5 7.3 64 373-436 2-65 (65)
244 COG1729 Uncharacterized protei 98.7 9.4E-07 2E-11 89.3 17.7 106 47-152 140-251 (262)
245 PRK15331 chaperone protein Sic 98.7 2.3E-07 4.9E-12 86.7 12.1 106 330-436 33-138 (165)
246 PF07079 DUF1347: Protein of u 98.7 0.0011 2.3E-08 71.1 41.8 373 51-428 9-521 (549)
247 PRK11906 transcriptional regul 98.7 1.3E-06 2.8E-11 94.8 19.4 139 229-367 259-405 (458)
248 PRK15331 chaperone protein Sic 98.7 5E-07 1.1E-11 84.4 13.8 105 44-149 33-137 (165)
249 KOG4648 Uncharacterized conser 98.7 1.3E-08 2.9E-13 103.0 3.6 241 160-441 100-340 (536)
250 PRK00726 murG undecaprenyldiph 98.7 4.9E-07 1.1E-11 100.9 16.6 261 556-843 81-356 (357)
251 PRK10803 tol-pal system protei 98.7 6E-07 1.3E-11 93.5 16.0 107 334-440 142-255 (263)
252 PRK11906 transcriptional regul 98.7 1.5E-06 3.3E-11 94.2 19.4 148 304-451 259-421 (458)
253 PRK10153 DNA-binding transcrip 98.6 1.1E-06 2.4E-11 100.7 18.7 144 75-226 330-488 (517)
254 KOG3081 Vesicle coat complex C 98.6 1.7E-05 3.6E-10 79.0 23.9 256 166-437 17-277 (299)
255 TIGR02400 trehalose_OtsA alpha 98.6 1.3E-06 2.8E-11 99.1 18.7 173 658-842 258-454 (456)
256 KOG0543 FKBP-type peptidyl-pro 98.6 9.6E-07 2.1E-11 93.3 16.0 134 156-295 207-355 (397)
257 cd03785 GT1_MurG MurG is an N- 98.6 6.3E-07 1.4E-11 99.7 15.8 242 557-823 80-339 (350)
258 TIGR00236 wecB UDP-N-acetylglu 98.6 1.3E-06 2.7E-11 97.8 17.9 297 499-817 9-343 (365)
259 KOG1914 mRNA cleavage and poly 98.6 0.00077 1.7E-08 73.6 37.5 372 72-451 10-450 (656)
260 KOG2471 TPR repeat-containing 98.6 2.3E-05 5E-10 83.7 24.6 157 47-203 205-381 (696)
261 cd03788 GT1_TPS Trehalose-6-Ph 98.6 1.1E-06 2.3E-11 100.7 16.3 171 657-840 262-457 (460)
262 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.5E-06 3.3E-11 95.0 16.6 122 304-428 173-294 (395)
263 KOG2471 TPR repeat-containing 98.6 6.6E-05 1.4E-09 80.4 27.7 262 171-433 220-650 (696)
264 KOG4234 TPR repeat-containing 98.5 7E-07 1.5E-11 84.3 11.2 105 337-441 98-207 (271)
265 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 1.3E-06 2.8E-11 97.8 15.7 293 506-816 15-345 (363)
266 PRK00025 lpxB lipid-A-disaccha 98.5 8.3E-07 1.8E-11 100.0 13.3 139 670-823 202-356 (380)
267 COG4105 ComL DNA uptake lipopr 98.5 3.7E-05 8E-10 77.1 23.0 173 81-274 33-219 (254)
268 KOG2053 Mitochondrial inherita 98.5 0.0003 6.5E-09 81.2 32.5 296 127-431 20-337 (932)
269 KOG1387 Glycosyltransferase [C 98.5 5.9E-06 1.3E-10 84.6 17.0 269 559-846 143-460 (465)
270 TIGR01133 murG undecaprenyldip 98.5 2E-06 4.3E-11 95.6 15.2 155 654-823 174-336 (348)
271 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.1E-06 6.8E-11 92.6 16.1 116 276-394 179-294 (395)
272 PF13512 TPR_18: Tetratricopep 98.5 4.7E-06 1E-10 76.3 14.2 107 46-152 8-135 (142)
273 PF12688 TPR_5: Tetratrico pep 98.5 4.5E-06 9.8E-11 75.3 13.8 94 302-395 3-102 (120)
274 PLN02275 transferase, transfer 98.4 1.7E-06 3.6E-11 96.8 13.6 132 659-805 213-370 (371)
275 KOG4234 TPR repeat-containing 98.4 2.9E-06 6.2E-11 80.3 12.6 108 48-155 95-207 (271)
276 PF14559 TPR_19: Tetratricopep 98.4 5.9E-07 1.3E-11 73.0 7.3 67 58-124 1-67 (68)
277 TIGR00215 lpxB lipid-A-disacch 98.4 1.9E-06 4E-11 96.5 12.8 251 556-824 79-367 (385)
278 PF12688 TPR_5: Tetratrico pep 98.4 6.8E-06 1.5E-10 74.2 13.9 99 117-219 2-103 (120)
279 cd04950 GT1_like_1 Glycosyltra 98.4 5.3E-06 1.2E-10 92.9 16.5 160 657-843 203-370 (373)
280 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.2E-06 2.6E-11 94.9 10.1 68 364-431 71-141 (453)
281 cd01635 Glycosyltransferase_GT 98.4 5.1E-06 1.1E-10 85.6 14.6 104 661-770 109-213 (229)
282 COG1729 Uncharacterized protei 98.4 6.4E-06 1.4E-10 83.4 14.5 106 85-194 144-252 (262)
283 PRK14501 putative bifunctional 98.4 5.4E-06 1.2E-10 100.5 16.6 178 658-850 264-468 (726)
284 COG4700 Uncharacterized protei 98.4 4.8E-05 1E-09 71.4 18.3 148 281-430 71-221 (251)
285 PF14559 TPR_19: Tetratricopep 98.4 1.2E-06 2.7E-11 71.1 7.1 54 381-434 4-57 (68)
286 PF13371 TPR_9: Tetratricopept 98.3 3.4E-06 7.5E-11 69.6 8.8 69 55-123 2-70 (73)
287 KOG1586 Protein required for f 98.3 0.00015 3.2E-09 70.8 20.7 190 95-300 27-229 (288)
288 PLN03063 alpha,alpha-trehalose 98.3 2.1E-05 4.6E-10 95.2 18.5 181 658-849 278-482 (797)
289 PF13371 TPR_9: Tetratricopept 98.3 4.3E-06 9.3E-11 69.0 8.8 64 376-439 3-66 (73)
290 KOG2796 Uncharacterized conser 98.3 0.00035 7.5E-09 69.4 23.0 226 191-436 69-320 (366)
291 PF13512 TPR_18: Tetratricopep 98.3 2.7E-05 5.8E-10 71.4 14.2 106 334-439 10-136 (142)
292 KOG3616 Selective LIM binding 98.3 0.00092 2E-08 74.8 28.1 210 194-429 664-909 (1636)
293 KOG0853 Glycosyltransferase [C 98.2 2.3E-05 5E-10 86.6 15.7 181 653-843 267-466 (495)
294 TIGR03713 acc_sec_asp1 accesso 98.2 7E-06 1.5E-10 94.3 11.8 157 655-822 318-502 (519)
295 KOG4555 TPR repeat-containing 98.2 3.3E-05 7.2E-10 67.9 12.5 97 338-434 47-147 (175)
296 KOG1586 Protein required for f 98.2 0.00019 4.2E-09 70.0 18.8 130 315-444 88-237 (288)
297 KOG4507 Uncharacterized conser 98.2 0.00016 3.4E-09 79.1 20.2 100 344-443 617-717 (886)
298 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2E-05 4.3E-10 85.6 13.6 79 33-111 60-141 (453)
299 KOG2796 Uncharacterized conser 98.2 0.0018 4E-08 64.4 25.5 232 81-367 68-319 (366)
300 PF10345 Cohesin_load: Cohesin 98.1 0.042 9.1E-07 65.6 42.0 410 46-460 57-599 (608)
301 KOG1585 Protein required for f 98.1 0.0011 2.4E-08 65.3 22.3 170 157-362 31-218 (308)
302 COG4700 Uncharacterized protei 98.1 0.00079 1.7E-08 63.5 20.1 151 94-253 68-221 (251)
303 KOG1258 mRNA processing protei 98.1 0.034 7.5E-07 62.4 41.2 380 63-450 60-489 (577)
304 KOG1585 Protein required for f 98.1 0.00048 1E-08 67.8 19.1 197 229-458 35-247 (308)
305 KOG4555 TPR repeat-containing 98.0 0.00021 4.4E-09 63.1 14.4 102 48-149 43-148 (175)
306 KOG1258 mRNA processing protei 98.0 0.03 6.5E-07 62.9 34.7 319 99-423 62-421 (577)
307 PF06552 TOM20_plant: Plant sp 98.0 3.7E-05 8.1E-10 72.6 10.4 100 316-442 7-120 (186)
308 PF10300 DUF3808: Protein of u 98.0 0.0042 9.1E-08 71.0 29.4 154 278-431 200-376 (468)
309 PF13424 TPR_12: Tetratricopep 98.0 8.9E-06 1.9E-10 68.1 5.8 73 114-186 3-75 (78)
310 PF10300 DUF3808: Protein of u 98.0 0.0025 5.5E-08 72.9 27.2 166 231-397 194-376 (468)
311 KOG3616 Selective LIM binding 98.0 0.0031 6.7E-08 70.8 26.1 35 401-435 994-1028(1636)
312 COG0438 RfaG Glycosyltransfera 98.0 0.00027 5.8E-09 77.8 18.6 174 660-847 200-379 (381)
313 PF10345 Cohesin_load: Cohesin 98.0 0.041 8.8E-07 65.7 37.5 318 64-384 37-465 (608)
314 PF13424 TPR_12: Tetratricopep 98.0 1.1E-05 2.5E-10 67.5 5.2 74 222-295 2-75 (78)
315 PF08631 SPO22: Meiosis protei 97.9 0.012 2.7E-07 62.6 29.1 131 126-256 3-152 (278)
316 PF06552 TOM20_plant: Plant sp 97.9 9.8E-05 2.1E-09 69.8 11.1 110 241-377 7-123 (186)
317 PF04184 ST7: ST7 protein; In 97.9 0.0017 3.8E-08 70.8 21.9 188 54-259 174-380 (539)
318 KOG4642 Chaperone-dependent E3 97.9 3.3E-05 7.1E-10 75.5 8.0 101 45-145 7-107 (284)
319 PF02259 FAT: FAT domain; Int 97.9 0.011 2.3E-07 65.8 28.8 293 55-366 5-341 (352)
320 KOG2610 Uncharacterized conser 97.8 0.009 2E-07 61.6 23.7 166 83-252 104-274 (491)
321 KOG1550 Extracellular protein 97.8 0.012 2.5E-07 69.1 28.6 82 349-435 454-542 (552)
322 KOG0985 Vesicle coat protein c 97.8 0.025 5.5E-07 66.3 29.5 280 95-423 1088-1375(1666)
323 TIGR01426 MGT glycosyltransfer 97.8 0.00066 1.4E-08 76.7 17.4 164 657-842 224-390 (392)
324 PF05843 Suf: Suppressor of fo 97.8 0.00049 1.1E-08 73.2 14.8 135 302-436 3-141 (280)
325 KOG2610 Uncharacterized conser 97.8 0.0016 3.4E-08 67.0 17.2 152 278-429 115-274 (491)
326 cd03793 GT1_Glycogen_synthase_ 97.8 8.6E-05 1.9E-09 84.0 9.1 109 732-847 467-589 (590)
327 KOG1550 Extracellular protein 97.8 0.018 3.8E-07 67.6 28.8 176 64-254 228-426 (552)
328 KOG0545 Aryl-hydrocarbon recep 97.7 0.00048 1E-08 67.7 12.7 76 367-442 229-304 (329)
329 PF02259 FAT: FAT domain; Int 97.7 0.026 5.6E-07 62.6 28.8 138 297-434 143-341 (352)
330 TIGR02919 accessory Sec system 97.7 0.00081 1.8E-08 75.6 16.4 220 562-818 186-421 (438)
331 KOG4642 Chaperone-dependent E3 97.7 7.2E-05 1.6E-09 73.2 6.9 92 340-431 16-107 (284)
332 TIGR03492 conserved hypothetic 97.7 0.00039 8.4E-09 78.0 13.4 142 669-823 220-379 (396)
333 KOG0985 Vesicle coat protein c 97.7 0.13 2.8E-06 60.7 33.0 211 189-435 1102-1312(1666)
334 COG1819 Glycosyl transferases, 97.7 0.002 4.3E-08 72.3 18.8 165 655-844 234-401 (406)
335 PLN02670 transferase, transfer 97.7 0.0013 2.9E-08 74.7 17.3 172 658-845 278-466 (472)
336 KOG4507 Uncharacterized conser 97.7 0.0083 1.8E-07 66.1 22.1 110 304-413 611-721 (886)
337 PF04184 ST7: ST7 protein; In 97.7 0.0038 8.3E-08 68.2 19.4 103 336-438 261-382 (539)
338 KOG0376 Serine-threonine phosp 97.6 8.3E-05 1.8E-09 80.5 6.4 110 48-157 4-113 (476)
339 PF13524 Glyco_trans_1_2: Glyc 97.6 0.00043 9.3E-09 60.0 9.4 88 742-838 1-90 (92)
340 KOG0545 Aryl-hydrocarbon recep 97.6 0.00096 2.1E-08 65.6 12.4 110 43-152 173-300 (329)
341 COG2909 MalT ATP-dependent tra 97.6 0.31 6.7E-06 57.5 36.0 301 48-361 347-686 (894)
342 PF13281 DUF4071: Domain of un 97.6 0.019 4.1E-07 62.2 23.3 191 190-403 140-340 (374)
343 KOG0890 Protein kinase of the 97.5 0.042 9.2E-07 70.6 28.8 133 241-375 1645-1796(2382)
344 PF05843 Suf: Suppressor of fo 97.5 0.0019 4.1E-08 68.8 15.2 136 50-189 3-139 (280)
345 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.2 4.3E-06 54.2 33.0 78 42-120 36-113 (660)
346 KOG0376 Serine-threonine phosp 97.5 0.0001 2.2E-09 79.8 5.3 105 337-441 7-111 (476)
347 PF13428 TPR_14: Tetratricopep 97.5 0.00022 4.8E-09 51.9 5.3 39 371-409 4-42 (44)
348 PF08631 SPO22: Meiosis protei 97.5 0.11 2.4E-06 55.3 28.2 129 94-222 5-152 (278)
349 COG2909 MalT ATP-dependent tra 97.5 0.41 8.8E-06 56.5 36.8 304 82-394 347-685 (894)
350 PLN03004 UDP-glycosyltransfera 97.5 0.0019 4.2E-08 73.0 14.9 140 657-809 269-425 (451)
351 PLN02992 coniferyl-alcohol glu 97.4 0.0036 7.8E-08 71.3 16.8 139 657-808 262-427 (481)
352 PHA03392 egt ecdysteroid UDP-g 97.4 0.0039 8.4E-08 72.1 17.4 161 659-842 297-465 (507)
353 PF13428 TPR_14: Tetratricopep 97.4 0.0003 6.5E-09 51.2 5.3 42 335-376 2-43 (44)
354 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0014 3E-08 67.5 11.2 103 47-149 80-186 (390)
355 TIGR02398 gluc_glyc_Psyn gluco 97.4 0.0071 1.5E-07 68.7 18.1 169 658-840 284-478 (487)
356 PF13281 DUF4071: Domain of un 97.4 0.043 9.3E-07 59.6 23.1 178 81-259 140-339 (374)
357 COG0707 MurG UDP-N-acetylgluco 97.4 0.011 2.4E-07 64.7 18.8 243 556-823 81-339 (357)
358 PF13431 TPR_17: Tetratricopep 97.4 0.0002 4.3E-09 48.6 3.3 32 391-422 2-33 (34)
359 PF07079 DUF1347: Protein of u 97.4 0.33 7.2E-06 52.7 36.8 336 53-394 50-521 (549)
360 KOG0890 Protein kinase of the 97.3 0.21 4.6E-06 64.6 31.5 105 333-439 1669-1792(2382)
361 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0025 5.4E-08 65.7 12.2 102 156-257 80-185 (390)
362 PF00515 TPR_1: Tetratricopept 97.3 0.00035 7.5E-09 47.6 4.3 32 403-434 2-33 (34)
363 PLN02863 UDP-glucoronosyl/UDP- 97.3 0.0051 1.1E-07 70.4 16.0 103 658-770 283-389 (477)
364 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.38 8.1E-06 52.1 32.7 143 70-221 30-191 (660)
365 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.5E-09 48.1 3.2 32 357-388 2-33 (34)
366 PLN02410 UDP-glucoronosyl/UDP- 97.3 0.0034 7.5E-08 71.2 14.4 141 657-809 263-411 (451)
367 PLN02167 UDP-glycosyltransfera 97.3 0.0057 1.2E-07 70.3 16.2 102 658-770 280-386 (475)
368 PLN03064 alpha,alpha-trehalose 97.3 0.012 2.5E-07 71.7 19.2 177 658-848 362-565 (934)
369 PLN03007 UDP-glucosyltransfera 97.3 0.0061 1.3E-07 70.3 16.4 103 657-769 284-390 (482)
370 PF07719 TPR_2: Tetratricopept 97.3 0.00057 1.2E-08 46.5 4.9 33 403-435 2-34 (34)
371 COG3118 Thioredoxin domain-con 97.3 0.036 7.7E-07 57.1 19.5 154 84-244 136-291 (304)
372 COG3118 Thioredoxin domain-con 97.3 0.012 2.7E-07 60.3 16.2 154 47-208 133-289 (304)
373 KOG0530 Protein farnesyltransf 97.2 0.066 1.4E-06 53.8 20.4 173 132-312 59-233 (318)
374 PLN02764 glycosyltransferase f 97.2 0.0062 1.4E-07 68.7 15.3 182 657-852 256-449 (453)
375 PLN02554 UDP-glycosyltransfera 97.2 0.0058 1.3E-07 70.4 15.5 118 658-788 274-406 (481)
376 PRK13184 pknD serine/threonine 97.2 0.44 9.5E-06 58.4 31.4 335 52-395 479-867 (932)
377 cd03784 GT1_Gtf_like This fami 97.2 0.01 2.3E-07 67.2 17.2 141 657-819 238-382 (401)
378 PLN02210 UDP-glucosyl transfer 97.2 0.0072 1.6E-07 68.9 15.4 138 658-809 269-416 (456)
379 KOG0530 Protein farnesyltransf 97.2 0.27 5.9E-06 49.5 23.8 185 46-237 40-233 (318)
380 PLN00414 glycosyltransferase f 97.1 0.0089 1.9E-07 67.8 15.5 155 656-822 250-417 (446)
381 PF00201 UDPGT: UDP-glucoronos 97.1 0.0019 4.1E-08 75.6 10.3 161 658-842 276-442 (500)
382 PLN02207 UDP-glycosyltransfera 97.1 0.016 3.4E-07 66.0 16.9 106 657-773 274-383 (468)
383 PLN02448 UDP-glycosyltransfera 97.1 0.0093 2E-07 68.4 15.3 135 657-809 273-416 (459)
384 COG2976 Uncharacterized protei 97.0 0.03 6.6E-07 53.9 15.4 117 318-435 70-192 (207)
385 PF13528 Glyco_trans_1_3: Glyc 97.0 0.0064 1.4E-07 66.5 12.9 110 657-792 191-301 (318)
386 KOG0128 RNA-binding protein SA 97.0 1.1 2.5E-05 52.4 36.0 369 63-432 94-527 (881)
387 PLN02562 UDP-glycosyltransfera 97.0 0.015 3.3E-07 66.2 15.9 141 659-814 274-419 (448)
388 PLN02173 UDP-glucosyl transfer 97.0 0.0094 2E-07 67.5 14.1 147 657-820 263-419 (449)
389 PLN00164 glucosyltransferase; 97.0 0.011 2.4E-07 67.8 14.9 140 658-809 272-432 (480)
390 KOG1308 Hsp70-interacting prot 97.0 0.00086 1.9E-08 69.5 4.7 99 50-148 116-214 (377)
391 PF00515 TPR_1: Tetratricopept 96.9 0.0018 3.8E-08 44.0 4.7 31 370-400 3-33 (34)
392 KOG2396 HAT (Half-A-TPR) repea 96.9 0.93 2E-05 50.1 36.3 76 47-122 104-180 (568)
393 PLN02555 limonoid glucosyltran 96.9 0.015 3.1E-07 66.6 14.8 154 658-821 277-441 (480)
394 COG2976 Uncharacterized protei 96.9 0.14 3.1E-06 49.4 18.7 120 134-258 70-192 (207)
395 PF03704 BTAD: Bacterial trans 96.9 0.023 5E-07 54.0 13.9 96 49-144 7-124 (146)
396 TIGR03590 PseG pseudaminic aci 96.9 0.0067 1.5E-07 64.6 11.2 86 667-769 181-267 (279)
397 PF07719 TPR_2: Tetratricopept 96.9 0.0024 5.2E-08 43.3 5.1 29 337-365 4-32 (34)
398 PLN02208 glycosyltransferase f 96.9 0.015 3.2E-07 65.9 14.4 151 657-822 250-416 (442)
399 PF03704 BTAD: Bacterial trans 96.8 0.015 3.2E-07 55.3 12.0 62 369-430 63-124 (146)
400 COG0790 FOG: TPR repeat, SEL1 96.8 0.51 1.1E-05 50.7 25.5 166 168-341 52-230 (292)
401 COG0790 FOG: TPR repeat, SEL1 96.8 0.3 6.5E-06 52.5 23.4 113 299-416 108-236 (292)
402 COG0297 GlgA Glycogen synthase 96.8 0.042 9.2E-07 62.3 16.9 162 659-847 294-480 (487)
403 PF08424 NRDE-2: NRDE-2, neces 96.8 0.12 2.6E-06 56.2 20.0 135 173-330 47-184 (321)
404 PLN03015 UDP-glucosyl transfer 96.8 0.018 4E-07 65.2 13.9 104 657-770 266-381 (470)
405 PLN02152 indole-3-acetate beta 96.7 0.04 8.7E-07 62.6 16.0 102 658-770 261-373 (455)
406 PF13181 TPR_8: Tetratricopept 96.7 0.0025 5.5E-08 43.2 4.0 32 403-434 2-33 (34)
407 PF02350 Epimerase_2: UDP-N-ac 96.7 0.018 3.9E-07 63.3 12.4 134 656-809 178-319 (346)
408 PRK12446 undecaprenyldiphospho 96.6 0.041 8.9E-07 60.8 15.3 229 556-813 81-330 (352)
409 PLN02534 UDP-glycosyltransfera 96.6 0.03 6.4E-07 64.2 14.0 105 658-770 283-390 (491)
410 KOG1308 Hsp70-interacting prot 96.6 0.0021 4.6E-08 66.7 4.2 90 345-434 125-214 (377)
411 PF08424 NRDE-2: NRDE-2, neces 96.5 0.2 4.3E-06 54.5 18.8 147 287-433 6-185 (321)
412 KOG3783 Uncharacterized conser 96.4 0.8 1.7E-05 51.2 22.5 297 125-435 199-524 (546)
413 KOG1463 26S proteasome regulat 96.3 1.6 3.4E-05 45.9 22.7 205 51-256 7-240 (411)
414 PRK02797 4-alpha-L-fucosyltran 96.2 0.13 2.9E-06 53.6 14.9 170 657-844 144-316 (322)
415 PF04910 Tcf25: Transcriptiona 96.2 0.17 3.7E-06 55.7 16.7 143 292-434 32-225 (360)
416 KOG3824 Huntingtin interacting 96.2 0.015 3.3E-07 59.2 7.6 78 47-124 115-192 (472)
417 PRK09814 beta-1,6-galactofuran 96.2 0.023 4.9E-07 62.5 9.9 113 686-822 188-312 (333)
418 PF02684 LpxB: Lipid-A-disacch 96.1 0.043 9.3E-07 60.2 11.5 140 669-821 199-353 (373)
419 KOG2396 HAT (Half-A-TPR) repea 96.1 3.2 6.8E-05 46.1 32.9 104 331-434 457-563 (568)
420 TIGR00661 MJ1255 conserved hyp 96.0 0.053 1.2E-06 59.3 11.9 72 719-795 229-301 (321)
421 KOG1463 26S proteasome regulat 96.0 2.5 5.5E-05 44.5 23.6 208 86-295 8-238 (411)
422 PF06258 Mito_fiss_Elm1: Mitoc 96.0 0.077 1.7E-06 57.0 12.5 202 562-777 53-264 (311)
423 KOG2041 WD40 repeat protein [G 96.0 4.1 9E-05 46.7 27.3 173 57-250 672-877 (1189)
424 KOG3824 Huntingtin interacting 95.9 0.024 5.2E-07 57.8 7.7 67 378-444 126-192 (472)
425 PF13181 TPR_8: Tetratricopept 95.9 0.013 2.9E-07 39.6 4.2 29 337-365 4-32 (34)
426 PF04910 Tcf25: Transcriptiona 95.9 0.34 7.3E-06 53.4 17.3 103 75-183 33-165 (360)
427 PF04781 DUF627: Protein of un 95.9 0.056 1.2E-06 47.2 8.8 92 54-145 2-107 (111)
428 PF13176 TPR_7: Tetratricopept 95.9 0.0065 1.4E-07 41.8 2.6 27 405-431 2-28 (36)
429 KOG1464 COP9 signalosome, subu 95.9 0.27 5.9E-06 49.5 14.6 194 61-257 40-263 (440)
430 PF13174 TPR_6: Tetratricopept 95.9 0.014 3E-07 39.1 4.0 31 404-434 2-32 (33)
431 KOG3783 Uncharacterized conser 95.8 4.3 9.4E-05 45.6 26.5 84 101-189 252-335 (546)
432 KOG2041 WD40 repeat protein [G 95.7 1.6 3.5E-05 49.9 21.2 253 98-394 679-936 (1189)
433 PRK11619 lytic murein transgly 95.7 6.6 0.00014 47.0 35.1 124 306-430 247-374 (644)
434 PRK15180 Vi polysaccharide bio 95.7 0.044 9.6E-07 59.2 8.8 143 311-453 300-442 (831)
435 PRK11619 lytic murein transgly 95.6 7.1 0.00015 46.7 34.9 323 48-396 33-374 (644)
436 KOG1538 Uncharacterized conser 95.6 1.6 3.4E-05 49.5 20.4 27 48-74 585-611 (1081)
437 TIGR02094 more_P_ylases alpha- 95.6 0.45 9.7E-06 56.1 17.6 173 658-842 388-598 (601)
438 PRK15180 Vi polysaccharide bio 95.6 4.7 0.0001 44.3 31.6 135 48-189 289-423 (831)
439 PF05693 Glycogen_syn: Glycoge 95.6 0.038 8.2E-07 62.8 8.1 108 732-849 462-586 (633)
440 COG1519 KdtA 3-deoxy-D-manno-o 95.6 0.35 7.6E-06 52.7 15.1 145 669-823 240-401 (419)
441 TIGR03568 NeuC_NnaA UDP-N-acet 95.5 0.29 6.3E-06 54.4 15.2 90 702-809 249-339 (365)
442 KOG1464 COP9 signalosome, subu 95.4 0.74 1.6E-05 46.5 15.7 114 303-416 148-286 (440)
443 PF13174 TPR_6: Tetratricopept 95.3 0.032 7E-07 37.2 4.3 31 84-114 2-32 (33)
444 PF09613 HrpB1_HrpK: Bacterial 95.3 0.27 5.9E-06 46.4 11.7 87 47-133 9-95 (160)
445 COG5159 RPN6 26S proteasome re 95.2 4.4 9.6E-05 41.6 25.3 216 52-296 7-236 (421)
446 COG3914 Spy Predicted O-linked 95.0 0.71 1.5E-05 52.0 15.7 132 314-445 45-185 (620)
447 PF13176 TPR_7: Tetratricopept 95.0 0.047 1E-06 37.5 4.3 25 337-361 2-26 (36)
448 PRK13184 pknD serine/threonine 94.9 12 0.00027 46.2 27.4 135 123-258 482-624 (932)
449 PF14561 TPR_20: Tetratricopep 94.8 0.3 6.4E-06 41.7 9.7 67 67-133 7-75 (90)
450 COG4976 Predicted methyltransf 94.8 0.047 1E-06 53.7 5.1 67 376-442 3-69 (287)
451 cd04299 GT1_Glycogen_Phosphory 94.8 0.77 1.7E-05 55.4 16.4 108 658-769 477-599 (778)
452 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.14 3E-06 38.6 6.5 36 84-119 3-38 (53)
453 KOG1192 UDP-glucuronosyl and U 94.7 0.28 6.1E-06 57.3 12.6 147 659-819 278-433 (496)
454 PRK10941 hypothetical protein; 94.7 0.36 7.8E-06 50.5 11.8 70 337-406 184-253 (269)
455 PF09613 HrpB1_HrpK: Bacterial 94.6 0.54 1.2E-05 44.4 11.6 97 336-433 12-108 (160)
456 PF12968 DUF3856: Domain of Un 94.5 1.2 2.5E-05 39.4 12.4 87 345-431 20-129 (144)
457 KOG2941 Beta-1,4-mannosyltrans 94.5 0.36 7.9E-06 50.6 11.0 124 686-822 291-423 (444)
458 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.21 4.7E-06 37.6 7.0 33 406-438 5-37 (53)
459 PF14561 TPR_20: Tetratricopep 94.5 0.34 7.4E-06 41.4 9.2 49 387-435 7-55 (90)
460 PRK10941 hypothetical protein; 94.4 0.47 1E-05 49.6 12.1 71 193-263 183-253 (269)
461 PF04781 DUF627: Protein of un 94.4 0.35 7.6E-06 42.4 9.1 46 386-431 62-107 (111)
462 PF09986 DUF2225: Uncharacteri 94.3 0.41 9E-06 48.4 11.1 91 130-220 91-194 (214)
463 smart00028 TPR Tetratricopepti 94.2 0.072 1.6E-06 34.7 3.8 31 404-434 3-33 (34)
464 PF04007 DUF354: Protein of un 94.2 2.9 6.2E-05 45.5 17.8 61 732-800 241-302 (335)
465 KOG1839 Uncharacterized protei 94.1 0.37 8E-06 59.3 11.8 162 270-431 936-1128(1236)
466 PF12968 DUF3856: Domain of Un 93.9 1.4 3.1E-05 38.9 11.7 95 51-145 12-129 (144)
467 COG4649 Uncharacterized protei 93.9 5.8 0.00013 37.8 16.5 92 162-253 99-195 (221)
468 COG4649 Uncharacterized protei 93.9 4.7 0.0001 38.4 15.9 133 310-443 68-207 (221)
469 PF09986 DUF2225: Uncharacteri 93.9 0.49 1.1E-05 47.8 10.6 50 238-287 90-139 (214)
470 PF07429 Glyco_transf_56: 4-al 93.9 2.2 4.8E-05 45.5 15.6 123 660-792 188-314 (360)
471 cd03789 GT1_LPS_heptosyltransf 93.8 0.83 1.8E-05 48.7 13.0 97 671-778 137-233 (279)
472 KOG4814 Uncharacterized conser 93.5 3.6 7.8E-05 46.9 16.9 188 67-254 264-457 (872)
473 COG5159 RPN6 26S proteasome re 93.5 11 0.00023 39.0 20.9 203 120-329 7-235 (421)
474 KOG3364 Membrane protein invol 93.5 0.63 1.4E-05 42.1 9.1 73 368-440 32-109 (149)
475 PF05159 Capsule_synth: Capsul 93.3 0.22 4.7E-06 52.8 7.4 87 671-768 138-224 (269)
476 COG4370 Uncharacterized protei 93.2 0.075 1.6E-06 54.4 3.4 149 676-846 260-411 (412)
477 KOG3364 Membrane protein invol 93.2 1.6 3.5E-05 39.6 11.2 75 334-408 32-111 (149)
478 PF04101 Glyco_tran_28_C: Glyc 93.2 0.11 2.4E-06 50.6 4.5 91 719-816 55-152 (167)
479 KOG1310 WD40 repeat protein [G 93.1 0.25 5.4E-06 54.5 7.3 88 348-435 388-478 (758)
480 PF10602 RPN7: 26S proteasome 93.1 1.1 2.4E-05 43.8 11.4 103 83-186 37-142 (177)
481 KOG1839 Uncharacterized protei 93.0 1.1 2.4E-05 55.4 13.2 137 46-186 930-1086(1236)
482 TIGR02561 HrpB1_HrpK type III 92.9 1.2 2.7E-05 41.2 10.5 86 48-133 10-95 (153)
483 COG1747 Uncharacterized N-term 92.8 20 0.00043 40.2 23.1 215 183-435 58-292 (711)
484 PF01075 Glyco_transf_9: Glyco 92.8 0.28 6.1E-06 51.2 7.2 207 557-778 3-218 (247)
485 KOG1310 WD40 repeat protein [G 92.8 0.53 1.2E-05 52.0 9.1 105 45-149 371-478 (758)
486 KOG1538 Uncharacterized conser 92.7 6.3 0.00014 45.0 17.4 216 194-428 588-830 (1081)
487 PRK01021 lpxB lipid-A-disaccha 92.7 0.93 2E-05 52.5 11.5 140 669-824 428-587 (608)
488 PF10602 RPN7: 26S proteasome 92.6 1.5 3.3E-05 42.9 11.5 65 191-255 36-103 (177)
489 PF04190 DUF410: Protein of un 92.5 15 0.00033 38.4 20.8 34 221-254 136-170 (260)
490 smart00028 TPR Tetratricopepti 92.4 0.22 4.8E-06 32.2 4.0 29 85-113 4-32 (34)
491 KOG2422 Uncharacterized conser 91.9 15 0.00032 41.8 18.9 163 94-257 250-451 (665)
492 KOG3807 Predicted membrane pro 91.9 17 0.00036 38.3 18.0 181 44-231 180-402 (556)
493 TIGR02561 HrpB1_HrpK type III 91.8 2.1 4.6E-05 39.8 10.5 79 341-419 17-95 (153)
494 PRK10916 ADP-heptose:LPS hepto 91.7 3.3 7.2E-05 45.7 14.5 111 658-778 181-296 (348)
495 KOG2422 Uncharacterized conser 91.6 9.6 0.00021 43.2 17.1 162 60-223 250-451 (665)
496 TIGR02201 heptsyl_trn_III lipo 91.6 3.1 6.8E-05 45.8 14.1 111 657-778 181-295 (344)
497 COG0763 LpxB Lipid A disacchar 91.5 1.3 2.8E-05 48.0 10.1 140 669-821 203-357 (381)
498 TIGR02195 heptsyl_trn_II lipop 91.4 1.8 3.8E-05 47.6 11.9 107 659-777 176-285 (334)
499 KOG0529 Protein geranylgeranyl 91.3 13 0.00028 40.6 17.3 132 282-413 45-194 (421)
500 COG4976 Predicted methyltransf 91.2 0.34 7.3E-06 47.9 5.0 61 91-151 4-64 (287)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-161 Score=1263.00 Aligned_cols=837 Identities=40% Similarity=0.589 Sum_probs=787.8
Q ss_pred CCCCCCccccCcccCCCCCCCCCCCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 10 NGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG 89 (921)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (921)
...++-.+.+..+-.+.........+.. .....+.-++.+-.+|+++..+|++++|+..|+.++++.|+..++|.++|
T Consensus 80 t~~~~llll~ai~~q~~r~d~s~a~~~~--a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla 157 (966)
T KOG4626|consen 80 TNTERLLLLSAIFFQGSRLDKSSAGSLL--AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLA 157 (966)
T ss_pred Ccccceeeehhhhhcccchhhhhhhhhh--hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHH
Confidence 3456666677777766664443332222 22334445677777999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHH
Q 002441 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (921)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 169 (921)
.++...|+.+.|.++|..+++++|....+...+|.++..+|+..+|..+|.++++..|.. +.+|.++|-.+..
T Consensus 158 ~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-------AiawsnLg~~f~~ 230 (966)
T KOG4626|consen 158 AALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-------AIAWSNLGCVFNA 230 (966)
T ss_pred HHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-------eeeehhcchHHhh
Confidence 999999999999999999999999999999999999999999999999999999999975 4458888999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002441 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (921)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (921)
+|+...|+.+|+++++++|+..++|++||.+|.+.+.+++|+.+|.+++...|++..++.++|.+|+++|..+-|+..|+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
+++++.|++++++.+++.++..+ |+..+|..+|.+++.+.|..+++.++||.+|.++|++++|..+|.++++.
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999999999999888888775 59999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (921)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 409 (921)
.|..+.+..+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+++..+|..++++.+||
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCCh-----HHHHHHHHHHH--HHHHhh-----------
Q 002441 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWG--KRFMRL----------- 471 (921)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~-----~~~~~~~~~~~--~~~~~~----------- 471 (921)
.+|...|+..+|++.|+++|+++||.++|..|++.++.++.+|.+ +++.+.+++|. .++...
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~ 543 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLS 543 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccc
Confidence 999999999999999999999999999999999999999999987 78888899988 333321
Q ss_pred -----------------------ccCCCCCCCCCCCCCCceeeccCCCcccchhhhhhhcccccccCCceEEEEEecccC
Q 002441 472 -----------------------YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK 528 (921)
Q Consensus 472 -----------------------~~~~~~~~~~~~~~r~lriGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~ 528 (921)
.+|+..|++-+.+++||||||||+||.+||+++||++++.+|||++||||||+.++.
T Consensus 544 ~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~ 623 (966)
T KOG4626|consen 544 HILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVN 623 (966)
T ss_pred hHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecC
Confidence 235778888888999999999999999999999999999999999999999999886
Q ss_pred CChhhHHHHHHHhhhCCeeEEccCCCHHHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCc
Q 002441 529 ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTI 608 (921)
Q Consensus 529 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG~~~~ 608 (921)
++. .||.++.++++||+|+++++...+|++|++|+|||||+|+|||.|+|.++||+|||||||+|+|||+|||+++|
T Consensus 624 d~t---~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~m 700 (966)
T KOG4626|consen 624 DGT---NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFM 700 (966)
T ss_pred CCc---hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCcee
Confidence 553 28999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCcccCcccceEEcCCCccccCCCC--------CCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHH
Q 002441 609 DYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWA 680 (921)
Q Consensus 609 Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~ 680 (921)
||+|||.++.|++....|+|||++||+||+++++.+ ...|+++.++|++|.|||||||+++||+|.++++|+
T Consensus 701 DYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~ 780 (966)
T KOG4626|consen 701 DYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWA 780 (966)
T ss_pred eEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHH
Confidence 999999999999999999999999999999999876 566889999999999999999999999999999999
Q ss_pred HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhh
Q 002441 681 RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY 760 (921)
Q Consensus 681 ~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~ 760 (921)
+||++||||+||+++.|+.++ ++++..++++|++++||+|.+... .++|++++.++||+|||++|+||||++|.||
T Consensus 781 ~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~va~-k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw 856 (966)
T KOG4626|consen 781 NILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSPVAA-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLW 856 (966)
T ss_pred HHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeeccccc-hHHHHHhhhhhhhcccCcCcCCcccchhhhc
Confidence 999999999999999998766 899999999999999999999877 5999999999999999999999999999999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002441 761 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 761 ~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~ 840 (921)
+|||+|||||+++++||++|+|..+|++++||++.+||+++||+|++|.+.|+.+|.++|..+..|||||..+|+..||+
T Consensus 857 ~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~ 936 (966)
T KOG4626|consen 857 AGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLER 936 (966)
T ss_pred cCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhhhcccc
Q 002441 841 TYRNMWHRYCKGDVPSLKRMEMLQQQVVS 869 (921)
Q Consensus 841 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 869 (921)
.|.+||.+||.|.+|.++|++.+|+...+
T Consensus 937 ~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 937 LYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred HHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 99999999999999999999998876543
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-104 Score=843.24 Aligned_cols=548 Identities=30% Similarity=0.484 Sum_probs=459.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 002441 283 NQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM- 359 (921)
Q Consensus 283 ~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~- 359 (921)
.-++..+...+..++.+++.+.. +...+...+....+......++..+|++..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33555555555667777765333 467777778888888888999999999999999998888887766666655554
Q ss_pred HHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002441 360 ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 360 al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
+....|++......+ +.....+|+..++...++++..+.|.++.+...+.....+...+. ...|
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~~ 197 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEAP 197 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hccc
Confidence 788888887765555 788888888999999999999999988766665555533333332 3333
Q ss_pred CChhhHhhHHHHh-----hhccCCChHHHHHHHHHHHHHHHhhc---cCCCCCCC-CCCCCCCceeeccCCCcccchhhh
Q 002441 434 DSRNAGQNRLLAM-----NYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWDN-TKDPERPLVIGYVSPDYFTHSVSY 504 (921)
Q Consensus 434 ~~~~a~~~~l~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~r~lriGyvS~d~~~H~v~~ 504 (921)
.+.....+..+.. .|+.+ +...-.....+..+.+.... .+++.|+. .+..++|+||||+|+|++.|+|++
T Consensus 198 tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~ 276 (620)
T COG3914 198 TNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGF 276 (620)
T ss_pred hHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHHH
Confidence 3333322222221 12111 12233333444455444222 23445552 234578999999999999999999
Q ss_pred hhhcccccccCCceEEEEEecc-cCCChhhHHHHHHHhhhCCeeEEccCCCHHHHHHHHHhCCccEEEecCCCCCCCchh
Q 002441 505 FIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLG 583 (921)
Q Consensus 505 ~~~~~l~~hd~~~fev~~Y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idiLvdl~g~t~~~r~~ 583 (921)
++.+++++|||++||||+|+.+ +..|..+.|++..+ .+|.++.+|+|.++|++|+.|+||||||++|||..+|..
T Consensus 277 l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~ 352 (620)
T COG3914 277 LLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQ 352 (620)
T ss_pred HHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchh
Confidence 9999999999999999999998 66788889988887 469999999999999999999999999999999999999
Q ss_pred hhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccCCCCCCCCC-----CCCCCCCCC
Q 002441 584 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV-----CPTPALTNG 658 (921)
Q Consensus 584 ~~a~r~APvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~-----~~~~~~~~~ 658 (921)
|||+|||||||||+|||+|||+|.|||||+|++++||+.+.+|+|+|||||. ||.|.+...++ +..++++++
T Consensus 353 v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp~~ 429 (620)
T COG3914 353 VFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLPED 429 (620)
T ss_pred hhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999994 56776554433 445899999
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002441 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 659 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
.|||||||+.+|++|+++++|++||++||||+|||+++| .++.+..+|+..++++||+.+|++|+|..+ .++|+++|.
T Consensus 430 avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~~~ 507 (620)
T COG3914 430 AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRARYG 507 (620)
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHhhc
Confidence 999999999999999999999999999999999999876 678899999999999999999999999998 579999999
Q ss_pred cccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002441 739 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMS 818 (921)
Q Consensus 739 ~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~ 818 (921)
.+||+||||||+||||++|||||||||||+.|++|++|+|+||++++|++|+||.|+++||++||++++|.+.+++.|.+
T Consensus 508 iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~ 587 (620)
T COG3914 508 IADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAE 587 (620)
T ss_pred hhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002441 819 LRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 850 (921)
Q Consensus 819 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~ 850 (921)
+++.+.++||||++.|++.||.+|.+||.+|.
T Consensus 588 l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 588 LKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999864
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=1.3e-97 Score=806.62 Aligned_cols=351 Identities=45% Similarity=0.753 Sum_probs=285.2
Q ss_pred ceeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCC-hhhHHHHHHHhhhCCeeEEccCCC-HHHHHHHHHhC
Q 002441 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (921)
Q Consensus 488 lriGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 565 (921)
|||||||+||++|||++|+.+++++||+++|||+||+.++.++ ..+.+++. .+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999987543 34555544 458999999997 68999999999
Q ss_pred CccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccCCC--
Q 002441 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 643 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~-- 643 (921)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986321
Q ss_pred --------------------------------------------------------------------------------
Q 002441 644 -------------------------------------------------------------------------------- 643 (921)
Q Consensus 644 -------------------------------------------------------------------------------- 643 (921)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE
Q 002441 644 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 690 (921)
Q Consensus 644 ----------------------------~~~~-----~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 690 (921)
.+.| +.+...+|++|+|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0001 1233457899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 691 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 691 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
|||+..+. ...++++++++++||+++||+|.|..+ ..+|+.+|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 78999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002441 771 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 771 ~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 846 (921)
++|+||+|+|+|+++||+||||.|.++||++|++|++|+++|+++|++||+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-44 Score=380.53 Aligned_cols=420 Identities=28% Similarity=0.420 Sum_probs=381.9
Q ss_pred CCCCCCCCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------------------------
Q 002441 27 QSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN------------------------- 81 (921)
Q Consensus 27 ~~~~~~s~s~~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~------------------------- 81 (921)
++.+.++++.+...-..........+++|...++.|+|.+|++....+...+|.+
T Consensus 27 ~~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~ 106 (966)
T KOG4626|consen 27 QSVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSL 106 (966)
T ss_pred cCcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhh
Confidence 3334333344433334444556668999999999999999999988776655543
Q ss_pred ---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002441 82 ---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 82 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
.+++-++|.++...|++++|+..|+.+++++|++.++|.++|.++...|+.+.|..+|..+++++|....
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c- 185 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC- 185 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh-
Confidence 5678889999999999999999999999999999999999999999999999999999999999998644
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (921)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (921)
+...+|..+...|+.++|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|++||
T Consensus 186 ------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 186 ------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred ------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (921)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 312 (921)
.+|...+.++.|+.+|.+++.+.|++.. ++-+++.+|..+|.++-|+..|+++++..|..++++.++|.++..
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 9999999999999999999999998754 455667777778999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
.|+..+|..+|.+++.+.|+.+++.++||.+|.++|++++|..+|+++++..|..+.++.+||.+|.++|++++|+.+|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 002441 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~ 462 (921)
+++.+.|..++++.++|..|..+|+...|+++|.+|+.++|...+|+.|+ +..|-..|+-.+.+..++
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 556666677666555443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.7e-33 Score=329.92 Aligned_cols=382 Identities=16% Similarity=0.178 Sum_probs=331.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445778899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHh------------------------------HHHHHHH------------------
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~~------------------ 159 (921)
.+|++++|+..|..+....+..... ...++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998887765544322111 0011110
Q ss_pred --------HHHHHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002441 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 160 --------~~~lg~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
+..++... ...+++++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++.+|.+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 11111111 1236899999999999986 477888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (921)
..+..+|.++...|++++|+..|+++++.+|++...+..++.+ +...|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555554 455679999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHH-H
Q 002441 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~-~ 378 (921)
+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|+.... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 379 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
...|++++|+.+++++++++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-31 Score=334.04 Aligned_cols=405 Identities=20% Similarity=0.186 Sum_probs=332.1
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
.+...+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
+...|++++|+..++++++.+|.+... +..++..+...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888776554 4566777778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------
Q 002441 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---------------- 269 (921)
++++|+..|+++++..|.++..+..++.++...|++++|+..|+++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766665554443
Q ss_pred -----------HhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002441 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (921)
Q Consensus 270 -----------~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 338 (921)
..+|.++...|++++|+..|++++...|+. ..+..++.++...|++++|+..++++++..|++..+++
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334556667788888888888888888776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002441 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (921)
.+|.++...|++++|+.+|+++++.+|+++.++.+++.++...|+ .+|+.+++++++..|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 002441 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (921)
Q Consensus 419 ~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~ 461 (921)
++|+.+|+++++.+|+++.+..++ +..+...|+.++..+..
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 888888888888888877776664 44455566665554433
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-30 Score=326.87 Aligned_cols=412 Identities=18% Similarity=0.188 Sum_probs=302.5
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHH------
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVE------ 83 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~------ 83 (921)
.+.+...++.+|..++..|++++|+..++++++..+ +...
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 355778899999999999999999999999865332 1110
Q ss_pred --------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 84 --------------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 84 --------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 001347888899999999999999999999999999999999999999999999999999999987
Q ss_pred hHhH--HHH-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002441 150 KPAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 150 ~~~~--~~l-----a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
.... ..+ ......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5421 111 122345688899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH------------------------------------------HHCCCHHHHHHHHHHHHHhCCChHH
Q 002441 223 MYAEAYCNMGVIY------------------------------------------KNRGDLESAIACYERCLAVSPNFEI 260 (921)
Q Consensus 223 ~~~~~~~~la~~~------------------------------------------~~~g~~~~A~~~~~~al~~~p~~~~ 260 (921)
++..++..++.++ ...|++++|++.|+++++.+|++..
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 496 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9887776666554 3456666777777777777666654
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------------
Q 002441 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------------- 326 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------- 326 (921)
.+..+ +.++...|++++|+..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 497 ~~~~L-------A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 497 LTYRL-------AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred HHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 44333 333333556777777777776666666666666665555555555555544332
Q ss_pred --------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 327 --------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (921)
Q Consensus 327 --------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (921)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++..
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 122455666666777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH----hhHHHHhhhccCCChHH
Q 002441 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG----QNRLLAMNYINEGHDDK 456 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~----~~~l~a~~~~~~~~~~~ 456 (921)
.|++++|++.++++++..|++..++..+|.++..+|++++|+++|++++...|+++... ..+..+..+...|+.++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777777777777777777777777766554321 11122444455566555
Q ss_pred HHHHHH
Q 002441 457 LFEAHR 462 (921)
Q Consensus 457 ~~~~~~ 462 (921)
..+.++
T Consensus 730 A~~~y~ 735 (1157)
T PRK11447 730 ALETYK 735 (1157)
T ss_pred HHHHHH
Confidence 554443
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-30 Score=329.16 Aligned_cols=367 Identities=15% Similarity=0.115 Sum_probs=328.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--------------H
Q 002441 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (921)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a 118 (921)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44888999999999999999999999999999999999999999999999999999999997642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (921)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355788999999999999999999999988654 677889999999999999999999999999877765554
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 199 VV------------------------------------------YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 199 ~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (921)
.+ +...|++++|+..|+++++.+|+++.+++.+|.+|.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 456799999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-------------------------------------hhhhhhhhc
Q 002441 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------------------------------------~lg~~~~~~ 279 (921)
..|++++|+..++++++..|++......++..+. .++..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998877655543322 234455667
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|++.|++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77788877665 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
+++..|++..++..+|.++...|++++|+++|++++...|+. +.++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987654 34667789999999999999999999986
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.7e-30 Score=319.94 Aligned_cols=387 Identities=20% Similarity=0.213 Sum_probs=322.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 129 (921)
..+.++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777777887888888888888888877777777777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002441 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (921)
|++++|++.|+++++..|++... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 88888888888887777776543 55667777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHH
Q 002441 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~ 289 (921)
|+..++++++..|.+...+..+|.++...|++++|+..|+++++..|.+...+..+ +..+...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-------ADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCHHHHHHHH
Confidence 88888888888888888888999999999999999999999988888876555444 44455567999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002441 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (921)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|++.|+++++..|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhc
Q 002441 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~ 449 (921)
.+..++.++...|++++|++.++++++.+|++..+++.+|.+|...|++++|++.|+++++.+|+++.+..++. ..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA--WLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999887776643 3344
Q ss_pred cCCC
Q 002441 450 NEGH 453 (921)
Q Consensus 450 ~~~~ 453 (921)
..++
T Consensus 816 ~~~~ 819 (899)
T TIGR02917 816 ELKD 819 (899)
T ss_pred hcCc
Confidence 4444
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.1e-29 Score=298.55 Aligned_cols=362 Identities=10% Similarity=-0.016 Sum_probs=259.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
....+...+..+...|++++|+.+++.++...|.+..+++.+|.+....|++++|+..|+++++.+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34445666777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...|++++|+..|+++++++|++..+ +..++.++...|++++|+..+++++...|+...++..++ .+...|+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSR 192 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCC
Confidence 88888888888888888888877654 555666677778888888888877777777777766654 3677788
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH-
Q 002441 207 YDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ- 284 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~- 284 (921)
+++|+..++++++..| ........++.++...|++++|+..|+++++..|++...+..++.++.. .|++++
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~eA 265 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSREA 265 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchhh
Confidence 8888888887777764 3333445556777777777777777777777777766555444444433 445553
Q ss_pred ---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 285 ---GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 285 ---A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 362 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
+.+|++...+..+|.++...|++++|+..|+++++.+|++. ..++++|+..|.++++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 77776666666666677777777777777777777776653 234456666666666655444
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.9e-29 Score=296.79 Aligned_cols=363 Identities=20% Similarity=0.179 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002441 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|++.++++++++|++..+ ++
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 456778999999999999999999999999996 7789999999999999999999999999999998765 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC------------------------------HHHH-----------------
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------------APAY----------------- 194 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------~~~~----------------- 194 (921)
.+|.++...|++++|+..|..+...++.. ...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 78888888899999988776554332211 1111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002441 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (921)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (921)
..++..+ ...++|++|+..|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002441 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (921)
Q Consensus 253 ~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (921)
+++|+....+..++.++ ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 99999876665555554 44679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------H
Q 002441 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------N 406 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~------~ 406 (921)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|++++++.|+....+ .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753322 2
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 002441 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (921)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~ 461 (921)
..+ .++...|++++|+++++++++++|++..+... ++..+...|+.++.....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHH
Confidence 223 33445799999999999999999998876554 455666777776655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=8.2e-29 Score=293.57 Aligned_cols=344 Identities=13% Similarity=0.015 Sum_probs=316.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 002441 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (921)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (921)
++..-+...+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|+..|+++++.+|++..+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a------- 112 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED------- 112 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH-------
Confidence 3445566778888999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++...+..++ .+...|
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence 6777888889999999999999999999999999999999999999999999999999999999988887765 488999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM- 318 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~- 318 (921)
++++|+..++++++..|...... ...++..+...|++++|+..++++++.+|++..++..+|.++...|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 99999999999999876432221 12334556678899999999999999999999999999999999999986
Q ss_pred ---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 319 ---AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 319 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 395 (921)
|+..|+++++.+|++..++..+|.++...|++++|+.+++++++++|+++.++..+|.++...|++++|+..|++++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
..+|++...+..+|.++...|++++|+..|+++++.+|++..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999888888899999999999999999999999999764
No 13
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.98 E-value=1.5e-28 Score=285.69 Aligned_cols=527 Identities=13% Similarity=0.072 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002441 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 284 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
+++.-+.......|.+.+++.+||.+....|.+++|+..++.++++.|++..+..+++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33333344445578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002441 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....+++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887776655554
Q ss_pred HHhhh----ccC----CC----hHHH---HHHHHHHHHHHHhhccCCCCCCCCCCCCCCc-eeeccCCCcccchhhhhhh
Q 002441 444 LAMNY----INE----GH----DDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIE 507 (921)
Q Consensus 444 ~a~~~----~~~----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l-riGyvS~d~~~H~v~~~~~ 507 (921)
.-++- +.. ++ +-.. -.+...++.+ +...++ ..|.++. ||-++-..+..=-.-.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~rIl~vi~sl~~GGAEr~~~ 301 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR------RNAEYD--AGPESFVGPVLMINGSLGAGGAERQFV 301 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc------Cccccc--CCCCCCcceEEEEeCCCCCCcHHHHHH
Confidence 32221 110 00 0000 0001111111 111111 2345666 7777755553211222333
Q ss_pred cccccccCC--------------ceEEEEEecccC--CChhhHHHHHHHhhhCCeeEEccCC------------------
Q 002441 508 APLVYHDYQ--------------NYKVVVYSAVVK--ADAKTIRFREKVMKKGGIWRDIYGI------------------ 553 (921)
Q Consensus 508 ~~l~~hd~~--------------~fev~~Y~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~------------------ 553 (921)
.+..+.++. ..+|+|.+.... .+.....+++. ++-+.+.+.
T Consensus 302 ~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~-----Gv~v~~l~~~~~~~~~~~~~~~~~~~~ 376 (694)
T PRK15179 302 NTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADA-----GIPVSVYSDMQAWGGCEFSSLLAPYRE 376 (694)
T ss_pred HHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhC-----CCeEEEeccCCccCcccccccchhhHH
Confidence 333333333 245666544221 12333333321 111111110
Q ss_pred -----C------HHHHHHHHHhCCccEEEecCCCCCC-CchhhhhcCC--CceEE-eeccCCCCCCCC------------
Q 002441 554 -----D------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGLP------------ 606 (921)
Q Consensus 554 -----~------~~~~a~~i~~d~idiLvdl~g~t~~-~r~~~~a~r~--APvQ~-~~~G~p~ttG~~------------ 606 (921)
+ -..+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|+|......
T Consensus 377 ~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~ 453 (694)
T PRK15179 377 YLRFLPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSE 453 (694)
T ss_pred HhhhcchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHH
Confidence 0 146778899999999983 3322 2344455433 35543 333433211100
Q ss_pred --Cc--cEEEecCCCCCCCc---ccCcccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCH
Q 002441 607 --TI--DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITP 673 (921)
Q Consensus 607 --~~--Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~ 673 (921)
.+ +.+|+.....-... -..-.+++..+|+..- .|.|.+.... ..-...++++.+++|++.++ .|..+
T Consensus 454 l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~ 533 (694)
T PRK15179 454 LLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPF 533 (694)
T ss_pred HHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHH
Confidence 01 22333211000000 0122357777776421 1222111000 00011234566778888865 79999
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCc
Q 002441 674 KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGT 752 (921)
Q Consensus 674 ~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~ 752 (921)
.++++++++++..|+.+|+|+|.+ ..++.+++..+++|+. +||.|.|... +....|..+||++-|+.+ +.+
T Consensus 534 ~LI~A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL~-~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp 605 (694)
T PRK15179 534 LWVEAAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGMG-ERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLP 605 (694)
T ss_pred HHHHHHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCCC-CcEEEcCCcc---hHHHHHHhcCEEEeccccccch
Confidence 999999999999999999999976 4567888999999997 9999999865 445567779999999877 669
Q ss_pred ccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 002441 753 TTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSP 827 (921)
Q Consensus 753 ~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~ 827 (921)
++++|||+||+|||+ +++++ .-+-.-|...++.. | .+++.+...++..+......+++..+++.. .
T Consensus 606 ~vlLEAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~ 676 (694)
T PRK15179 606 NVLIEAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--A 676 (694)
T ss_pred HHHHHHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--H
Confidence 999999999999997 55551 11111244444543 3 246666666655554444566666666654 3
Q ss_pred CCChHHHHHHHHHHHH
Q 002441 828 VCDGQNFALGLESTYR 843 (921)
Q Consensus 828 l~~~~~~~~~~e~~~~ 843 (921)
.|+++.+++.++++|+
T Consensus 677 ~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 677 RFSLNQMIASTVRCYQ 692 (694)
T ss_pred hCCHHHHHHHHHHHhC
Confidence 4999999999999995
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-28 Score=251.32 Aligned_cols=378 Identities=18% Similarity=0.183 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
+..+-.+|+.++.+|+|++||++|.++|+..|+.+..|-+++-||...|++++-++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHH------------------Hhc--------------CCCChHhHHHHHHHHH--------------
Q 002441 128 DEGRLVEAAESYHKA------------------LSA--------------DPSYKPAAECLAIVLT-------------- 161 (921)
Q Consensus 128 ~~g~~~~A~~~~~~a------------------l~~--------------~p~~~~~~~~la~~~~-------------- 161 (921)
..|++.+|+....-. ++. .|.-+.+ ..++. |+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~-~fi~s-yf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA-TFIAS-YFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH-HHHHH-HHhhccccccccccCC
Confidence 999999997544211 110 0110000 00000 00
Q ss_pred ------HHHH--HHHHc---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 162 ------DLGT--SLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA 217 (921)
Q Consensus 162 ------~lg~--~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (921)
.+.. -.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0000 01111 24556666555544321 112 667788889999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 002441 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (921)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 297 (921)
++++|.....|..++.+|...++.++..+.|.++.+++|++++.++..+++++-+ +++++|+.-|++++.++|
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcCh
Confidence 9999999999999999999999999999999999999999998888877777765 499999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Q 002441 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL 371 (921)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 371 (921)
++.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|. ++..+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55555
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 372 NNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 372 ~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
...|.+.. -.+++..|+.+++++++++|....++..||.+...+|+.++|+++|+++..+--.
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55555433 3689999999999999999999999999999999999999999999999887544
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.9e-27 Score=285.28 Aligned_cols=409 Identities=15% Similarity=0.095 Sum_probs=338.6
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
.+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35555666677889999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
+...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 4456777788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HCCCH---HHHHHHHHHHHHhCCChHHHHHHHHHHHHh-
Q 002441 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD- 271 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 271 (921)
..++|+..++++.. .|... .....+..++. ..+++ ++|++.++++++..|.++........+...
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998765 44421 12222222222 22345 789999999997755554433333333333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 002441 272 LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD 346 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 346 (921)
++. +...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++++.+|.+ ......++.++..
T Consensus 244 l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 333 3456899999999999998864432 244446999999999999999999999988765 4567788888999
Q ss_pred cCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 347 RDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
.|++++|+..++++.+..|. ...++..++.++...|++++|++.+++++...|++..++..+|.+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999998762 245778899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHH
Q 002441 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (921)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 466 (921)
+...|++++|++.++++++++|++..+...+ ++.++..++.+++....++..+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999877654 4566666777666665555443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.7e-27 Score=285.53 Aligned_cols=381 Identities=15% Similarity=0.070 Sum_probs=320.7
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.+.....+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++..|++.. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la 198 (921)
.++...|++++|+..++++++..|++..+ +..++.++...+..++|+..++++.. .|+.. .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776 45567777788999999999987776 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHH
Q 002441 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (921)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (921)
.++. ..+++ ++|+..++++++..|.++. +.......+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--
Confidence 2222 22345 7899999999976443322 22221233467799999999999999886432211
Q ss_pred HHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------
Q 002441 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------- 332 (921)
Q Consensus 264 ~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 332 (921)
+...++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++.+..|.
T Consensus 274 ----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 274 ----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred ----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 11113556677889999999999999888765 456777888899999999999999999998762
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002441 333 --------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 333 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++..+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 245778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
++.+|.++..+|++++|...++++++.+|+++.+.
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999998553
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-26 Score=259.49 Aligned_cols=395 Identities=19% Similarity=0.250 Sum_probs=322.9
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
..++..+.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|+.++..|+++.|..+|+++++..|++.+....+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 356778889999999999999999999999988887 7788899999999999999999999999999999999999998
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCChHhHHHHHHH-------------------------------HHHHHHHHHH
Q 002441 125 LYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLKL 169 (921)
Q Consensus 125 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~-------------------------------~~~lg~~~~~ 169 (921)
+|...+ ..+.|..+..++++..|.+.+++..++.+ +.++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 888775 66788888888888888888877776654 3456677777
Q ss_pred cCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 170 AGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 170 ~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.|++.+|...|.+++.. +++ +....|++|.++...++++.|.+.|..+++.+|.+.+++..+|......+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 78888888888777765 111 12347778888888888888888888888888888888888887777777
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-----
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 312 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----- 312 (921)
+..+|...++.++..+..++.++..++.+ +.....+..|.+-|+..++... .++-+...||.+++.
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G~~-------~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLGNL-------HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHHHH-------HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 78888888888888777777666554443 3445566666665555554322 355667777877653
Q ss_pred -------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 313 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (921)
Q Consensus 313 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 385 (921)
.+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+|+..|.+..+--.++..+|.|+|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999887788999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhh
Q 002441 386 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (921)
Q Consensus 386 ~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~ 447 (921)
.|++.|+.+++.. .++.+++..||.++.+.|++.+|.+...+++.+.|.++....|+.+.+.
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 9999999999874 3568999999999999999999999999999999999999999876543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3e-25 Score=268.14 Aligned_cols=157 Identities=13% Similarity=0.019 Sum_probs=136.5
Q ss_pred cCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 43 ~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 122 (921)
...+....++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..+
T Consensus 39 ~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 39 YRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH---------------------------------HHHHHHHHHH
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLKL 169 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------------------------~~~lg~~~~~ 169 (921)
+.+ +++++|+..|+++++.+|++.++...++.. ...+..+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 776 999999999999999999999988777765 1223678888
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
++++++|+..+.++++..|.+......++.+|..
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999988877765555555444444
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-25 Score=252.52 Aligned_cols=387 Identities=21% Similarity=0.248 Sum_probs=341.5
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 122 (921)
.+.+.-.++-.|.+.+..|+|-.|+.+|++++..+|.. ++..+.+|.|+..+|+.+.|+..|+++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 44577889999999999999999999999999998864 56788899999999999999999999999999999999999
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHH
Q 002441 123 GILYKDEG---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYN 196 (921)
Q Consensus 123 a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 196 (921)
|.+-.... .+..+...+.++...++.++.+ +..++..++..|++..+......++..... .++.++.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~-------l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~ 312 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVA-------LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQ 312 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHH-------HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 98876654 4678999999999999999886 677788888889999999999999887533 3567999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhh
Q 002441 197 LGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 275 (921)
+|.+|..+|+|++|..+|.++++.++++ .-.++.+|.+|+..|+++.|+.+|+++++..|++.+....++.+|...+
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-- 390 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-- 390 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--
Confidence 9999999999999999999999999988 7788999999999999999999999999999999988888888777654
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCH
Q 002441 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNL 350 (921)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~ 350 (921)
......++|..++.++++..|.+.++|..++.++....-+.. +.+|.+|+.+ .+--++.++++|..++..|++
T Consensus 391 -~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 -KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred -hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 334567899999999999999999999999999887665555 9999998854 344589999999999999999
Q ss_pred HHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002441 351 DKAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (921)
Q Consensus 351 ~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (921)
.+|...|.+|+.. +++. ....+++|.++...++++.|.+.|..+++.+|.+..++..+|.+....++..+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 9999999999876 2222 23589999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHhhcCCCChhhHhh
Q 002441 421 AIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 421 A~~~~~~al~l~P~~~~a~~~ 441 (921)
|...++.+++.+..+++++.-
T Consensus 549 a~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHH
Confidence 999999999999999998764
No 20
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-25 Score=239.04 Aligned_cols=389 Identities=21% Similarity=0.229 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 128 (921)
..+-..++..+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHH---------HHH-cCC-------hHHHHHHHHHHHhh-----
Q 002441 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKI----- 186 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---------~~~-~g~-------~~~A~~~~~~al~~----- 186 (921)
.|+|++|+..|.+.++.+|++......++.++...... +.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988777777665211000 000 000 00011111111110
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 002441 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 187 ------------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~ 209 (921)
.|. .......+|...++..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHH
Q 002441 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~ 289 (921)
|++.|.++++++ .+...+.+.+-+|+..|.+.+.+....++++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999999888777777888999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002441 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (921)
++++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876544 556667778888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHh
Q 002441 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~ 446 (921)
.|.+.|.||.++|++..|++..+++++++|+....|...|.++..+.+|++|.+.|+++++++|++.++.....-++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876654433
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=7.9e-24 Score=255.89 Aligned_cols=370 Identities=15% Similarity=0.073 Sum_probs=179.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002441 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (921)
Q Consensus 52 l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 131 (921)
+..+..+..+++++.|+++ +...|.+.. ....-......+.+.+|....+...+..|.+..++..++....+.|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 317 GATLPVLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 3345555555555533332 223344332 11111122233455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCC---hHhHHHHHHHHHHHHH--------HH----------HHcCChHH---HHHHHHHHHhhC
Q 002441 132 LVEAAESYHKALSADPSY---KPAAECLAIVLTDLGT--------SL----------KLAGNTQD---GIQKYYEALKID 187 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~lg~--------~~----------~~~g~~~~---A~~~~~~al~~~ 187 (921)
+++|...|+++....++- ......++.++...+. .+ .-.|+..+ +...+.+++...
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 555555555555432111 0011122222221100 00 11333322 333333333434
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 002441 188 PH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (921)
Q Consensus 188 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (921)
|. ++.+++++|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..|++++...|... .+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHH
Confidence 44 55555555555554 455555555555555555432 233444444555555555555555544433322 23333
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002441 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (921)
+.++.. .|++++|+.+++++++.+|.....+..++......|++++|+..|+++++.+|+ ..++.++|.++.
T Consensus 549 a~all~-------~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~ 620 (987)
T PRK09782 549 ANTAQA-------AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR 620 (987)
T ss_pred HHHHHH-------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 433333 335555555555555555555544444444444445555555555555555554 555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (921)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (921)
+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCCChh
Q 002441 426 EQCLKIDPDSRN 437 (921)
Q Consensus 426 ~~al~l~P~~~~ 437 (921)
+++++++|++..
T Consensus 701 ~~Al~l~P~~a~ 712 (987)
T PRK09782 701 RLVIDDIDNQAL 712 (987)
T ss_pred HHHHhcCCCCch
Confidence 555555555443
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-23 Score=220.17 Aligned_cols=359 Identities=19% Similarity=0.195 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH
Q 002441 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (921)
..+-.+|.-++..|+|++|+++|.+++.+.|+.+..|.+++-+|...|++++.++...++++++|++..+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999998776 555
Q ss_pred HHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCH-------------------
Q 002441 163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA------------------- 191 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~------------------- 191 (921)
.+..+...|++.+|+.-. ++.++. .|.-+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 555555566666665432 111111 11111
Q ss_pred --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHCCCHHHHHHH
Q 002441 192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (921)
Q Consensus 192 --------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (921)
++-..-+.-+...+ .|.+|...+.+..... ..+ ..++...|..++-.|+...|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11111111112222 5666766666654321 112 56788888899999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002441 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
|+++++++|.+... |..++.+|...++.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus 349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987654 45556666667899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 002441 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y 401 (921)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~ 401 (921)
+++|++...+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|++++++.|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHH
Q 002441 402 AEAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (921)
Q Consensus 402 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~ 457 (921)
+..+.+.|.+.. -.+++..|++.+++|+++||....|...+ +..-+..+..++.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEA 556 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHH
Confidence 555555444432 34899999999999999999998887764 3333444444433
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-23 Score=220.77 Aligned_cols=389 Identities=21% Similarity=0.234 Sum_probs=325.8
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHhCCCC----
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (921)
.++...+.+|++++-.++|..|..+...- ..+..+..+.+..+.|+....++++|+..+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 57888899999999999999998887764 556677888999999999999999999888732 1112211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH---------------------
Q 002441 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------------------- 159 (921)
Q Consensus 116 ---------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------------------- 159 (921)
....+..|.+|....+.++|...|.+++..+....++...+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 23456778889999999999999999988877765543333221
Q ss_pred -----------------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 160 -----------------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (921)
Q Consensus 160 -----------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (921)
+...+..++..+++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 112344566667778888888888888887766665544
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhh
Q 002441 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (921)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 278 (921)
-++.+.|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|.+..+|...+..+..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------- 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------- 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence 4888888888777777888888999999999999999999999999999999999999998877766555544
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
++..++|+..|..|-++.|........+|.-|...++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 359 MALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 359 ~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+++..-+ .-...+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9994321 124468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHhhH
Q 002441 432 DPDSRNAGQNR 442 (921)
Q Consensus 432 ~P~~~~a~~~~ 442 (921)
+|++..+..-+
T Consensus 519 ~p~n~~~~~lL 529 (611)
T KOG1173|consen 519 KPDNIFISELL 529 (611)
T ss_pred CCccHHHHHHH
Confidence 99997665443
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-22 Score=211.11 Aligned_cols=368 Identities=17% Similarity=0.151 Sum_probs=253.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~ 124 (921)
++-.++..|.++.+.|...+|++.|..++...|-+..+|..++.+... ++........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 344455556666666666666666666666666666666666555322 111222222222 22233344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 125 LYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
++....+.++++.-++..... .|.+... -...|.+.....++++|+..|+.+.+.+|-..+-.-...++++-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 566666667777766666665 4544332 23344555556777777777777777777666655556666665
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHH
Q 002441 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~ 283 (921)
.++-.+---..+.+.+++.-.++....+|+.|.-.++.++|+.+|+++++++|+...+|..++.- |..+++..
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHE-------yvEmKNt~ 381 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHE-------YVEMKNTH 381 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHH-------HHHhcccH
Confidence 55555544555556666666677777778888888888888888888888888776555544444 44456778
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002441 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 284 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
.|++.|++|++++|.+..+|+.+|++|..++...=|+-+|+++++..|++...|..||.+|.+.++.++|+++|.+++..
T Consensus 382 AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 382 AAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
...+..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-++.-
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 777778888888888888888888888888877 345556677778888888888888888777777665443
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.9e-24 Score=235.34 Aligned_cols=307 Identities=20% Similarity=0.280 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002441 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (921)
Q Consensus 117 ~a~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (921)
..+..+|..|.. +-+..+|+..|++.-...++. +.++..+|..|+.+++|++|..+|+.+-++.|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-------~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-------GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655544 456789999999955555554 34588899999999999999999999999999877666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh
Q 002441 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 274 (921)
-....++..+.+--+---+.+..++.+|+.++.|..+|++|.-+++++.|+++|+++++++|.+. .+|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-------YayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-------hhhhhcCC
Confidence 66677777766655555556667889999999999999999999999999999999999999875 35556676
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
-+....++++|..+|++++..+|.+..+|+.+|.+|.++++++.|+-+|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|++|+.++|.++-..+..|.+++.++++++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|--|.+++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Chh
Q 002441 435 SRN 437 (921)
Q Consensus 435 ~~~ 437 (921)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 655
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=7.5e-22 Score=234.11 Aligned_cols=394 Identities=12% Similarity=0.018 Sum_probs=295.5
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.+..++..+..+...+++|++++|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|.....+..+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34477889999999999999999999999999999999655558888889999999999999999943444455555558
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
.++..+|++++|++.|+++++.+|+++.+ +..++..+...++.++|++.++++...+|..... ..++.++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 89999999999999999999999999776 4456777788899999999999999999986554 556677766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----------------------------------
Q 002441 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE---------------------------------- 249 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------------------- 249 (921)
.++..+|++.++++++.+|++.+++..+..++...|-...|.+..+
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7888789999999999999999998888888777776655554443
Q ss_pred --------------HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Q 002441 250 --------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEML 314 (921)
Q Consensus 250 --------------~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g 314 (921)
+.+...+..+........+....--.+...+++.+++..|+.+...... -..+....|..|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 2222111111111111112222222344566777788777776654422 3346667788888888
Q ss_pred ChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHH
Q 002441 315 KFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNN 373 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~ 373 (921)
+.++|+.+|++++.-.+ ........|...+...+++++|..++++..+..| +..++...
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 88888888888776542 2333346677777888888888888888776433 33456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002441 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 374 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
++.++...|++.+|++.+++.+...|.+..+...+|.++...|++.+|.+.+++++.++|++..+...+..+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888888888888888877776665443
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=9.2e-23 Score=203.73 Aligned_cols=326 Identities=19% Similarity=0.226 Sum_probs=257.4
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
+.+++..+.+|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHh---HHHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002441 125 LYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (921)
+++++|++++|...|+++++.+|++... ...++. .+......+...|+...|+....+.+++.|-++..+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 9999999999999999999999965443 222222 23445556677899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHH---HH--Hh
Q 002441 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI---AL--TD 271 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~--~~ 271 (921)
.+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-. +- ..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997643221111 00 11
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 272 LGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (921)
-.......+++.++++..++.++.+|..+. ....+..++..-+++.+|++.+.++++++|++..++...+..|+..
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 112223345566666666666666655332 2334455555666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHH
Q 002441 348 DNLDKAVECYQMALSIKPNFSQS 370 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~ 370 (921)
..|+.|+..|++|.+.++++..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHH
Confidence 66666666666666666655443
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-21 Score=203.92 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=271.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-------------------HHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (921)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345677889999999999999888877643 222222222222222211 11222222
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH---------------------
Q 002441 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (921)
Q Consensus 108 al~~----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------- 162 (921)
-++. ...+...++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234577888999999999999999999999999999888877665543221
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 002441 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 163 -lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (921)
++.++....+.++++..++..... .|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-...++++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 223333334444555555444444 445555555555555555555555555555555555444444444444443333
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002441 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
-.+---.-+.+..++.--++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 22222222333333322111 12235666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..|++|++++|.+..+|+.+|..|.-++...=|+-+|++|++..|++...|..||.||.++++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+..++..||.+|.++++.++|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999843
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.7e-24 Score=230.63 Aligned_cols=306 Identities=20% Similarity=0.214 Sum_probs=258.7
Q ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002441 84 AHIGKGICLQ--MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 84 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
.+..+|..|. .+-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+..|-..+....+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444444444 34466788888888666777778888888999999999999999999888888876665444455544
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
.+ .+--+--...+..++.+|+.++.|..+|.||.-+++++.|+++|+++++++|....+|..+|.-+.....+
T Consensus 399 HL-------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 HL-------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HH-------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 44 22222223345667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002441 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (921)
++|..+|++++..+|.+..+|+. +|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYG-------lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYG-------LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHh-------hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 99999999999999988765554 55666667899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002441 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 322 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
+|++|+.++|.++-..+..|.+++..+++++|+..+++..++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HH
Q 002441 402 AE 403 (921)
Q Consensus 402 ~~ 403 (921)
..
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 44
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=4.6e-22 Score=222.81 Aligned_cols=377 Identities=15% Similarity=0.128 Sum_probs=294.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
.+.+.++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++...|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV 200 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 200 (921)
..++|++++|.-+|.++++.+|.+... .+..+.+|.+.|+...|...|.+++...|.. .......+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999998665 6667778888899999999999999999832 2233455778
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCChHH----------------
Q 002441 201 YSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEI---------------- 260 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~---------------- 260 (921)
+...++-+.|++.++.++... ....+.+..++.+++....++.|.......... .+++.+
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 888888899999999998843 234556778899999999999998887665541 111110
Q ss_pred ----HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CH
Q 002441 261 ----AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA 334 (921)
Q Consensus 261 ----~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 334 (921)
.-..+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.+|..+....+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 0011111334444444455555555555443322223 35678888888888888888888888888776543 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHH
Q 002441 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY 405 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------~~~~ 405 (921)
.+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++.+.-++.+ ..+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888888888766333222 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 002441 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (921)
.....+|...|+.++-+..-...+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777888888888887544443333
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.5e-22 Score=227.02 Aligned_cols=308 Identities=20% Similarity=0.174 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH
Q 002441 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (921)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.... ..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---QR------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---HH------
Confidence 344555666666666666666666666666666666666666666666666666666666553221110 01
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 002441 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (921)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555556666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002441 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (921)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 322 (921)
+|++.++++++..|..... ..+..+..++..+...+++++|+.+++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666555443211 12223444555555566777777777777766777777777788888888888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002441 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 323 ~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 88888777665 456677788888888888888888888888776644 3777888888888888888888888888876
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHhh
Q 002441 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCLK 430 (921)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 430 (921)
......++..+.. .|+..+|+..+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6554444433322 3467777766665553
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.9e-22 Score=224.03 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=234.0
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~ 121 (921)
......+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..+.. ..++..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3556677789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~ 196 (921)
+|.+|...|++++|+..|+++++..|.+.. ++..++.++...|++++|++.++++++..|... ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEG-------ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHH-------HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 899999999999999999999988776543 377788888888999999998888888776642 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhh
Q 002441 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 276 (921)
+|.++...|++++|+..|+++++..|+...++..+|.++...|++++|++.++++++..|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888788888888888888888888888888777655431
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 123445566677777777777777777777776543 37778888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 002441 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAI 395 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al 395 (921)
++++++..|++......++..+.. .|+.++|+..+++.+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 888888877776544444433322 346667766666544
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=6.4e-22 Score=203.75 Aligned_cols=386 Identities=18% Similarity=0.183 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
..-...|++++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+.+.+..|+...+ +++.
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~ 316 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLI 316 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhh
Confidence 33445677788888888888888888887775 24567778888888899999999999988888876544 4667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC----------CCChHhHHHHHH-----------------------------------
Q 002441 124 ILYKDEGRLVEAAESYHKALSAD----------PSYKPAAECLAI----------------------------------- 158 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~la~----------------------------------- 158 (921)
.+++..|+-++-.+.|.+.+.+- +.+......+..
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 77888888888888888887641 111000000000
Q ss_pred ------------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHH
Q 002441 159 ------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTAL 211 (921)
Q Consensus 159 ------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~ 211 (921)
+-.+.+..+.+.|+++.|++.++-.-+.+... ..+-.+|..+++.+ .++.+|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 01123445777888888888876555444432 23445666666553 4688899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHH
Q 002441 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (921)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~ 291 (921)
.+...++.++.-++.++.+.|.+.+..|++++|.+.|++++..+..-. .+++++|..+...|++++|+++|-+
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-------ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-------EALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-------HHHHHhcccHHHhcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766544 4566677777778899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002441 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (921)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (921)
.-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+..
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
..||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-...|++.+...-+
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=207.89 Aligned_cols=410 Identities=20% Similarity=0.231 Sum_probs=307.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAH 119 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~ 119 (921)
.-..++.+|..|..+..+.+|+..|+-+++. .|+....-.++|.+++++.+|.+|+++|+.++..-|.- ..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3457888999999999999999999988763 57777778899999999999999999999999987752 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------------
Q 002441 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------- 186 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 186 (921)
.++|..+.+.|+|+.|+..|+.+++..|+...+ +++..+++..|+-++-.+.|.+.+.+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 889999999999999999999999999986543 45666777788888888889888865
Q ss_pred -CCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHh-----CCC--------------------CHHHHHHHHHHH
Q 002441 187 -DPHYAPAYYNLGV-----VYSELMQYDTALGCYEKAALE-----RPM--------------------YAEAYCNMGVIY 235 (921)
Q Consensus 187 -~p~~~~~~~~la~-----~~~~~g~~~~A~~~~~~al~~-----~p~--------------------~~~~~~~la~~~ 235 (921)
+|++ .+.+-+. -.+...+-..|.++.-.+.++ .|+ -.+.-.+.+-.+
T Consensus 352 ddp~~--~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 352 DDPDD--NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CCcch--HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 1111 1111110 001111122222222222111 111 112334455566
Q ss_pred HHCCCHHHHHHHHHHHHHhCCChHH-HHHHHH-----------------------------HHHHhhhhhhhhcCCHHHH
Q 002441 236 KNRGDLESAIACYERCLAVSPNFEI-AKNNMA-----------------------------IALTDLGTKVKLEGDINQG 285 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la-----------------------------~~~~~lg~~~~~~~~~~~A 285 (921)
++.|+++.|++.++-.-+.+..... +..+++ .++.+.|++.+..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 6666666666665544333222111 111111 2234455666678899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002441 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
.+.|++++..+....++++++|..+..+|+.++|+.+|-+...+--++.+++..++.+|..+.+..+|+++|.++..+-|
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 99999999888888889999999999999999999999988888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002441 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
+++.++..||.+|-+.|+..+|.+++-......|.+.+...+||..|....-.++|+.+|+++--+.|+- ..+.++.+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kwqlmia 667 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQLMIA 667 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888874 34556666
Q ss_pred hhhccCCChHHHHHHHHHHHHHH
Q 002441 446 MNYINEGHDDKLFEAHRDWGKRF 468 (921)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (921)
..+-..|+..+.++.+++..+.|
T Consensus 668 sc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHhC
Confidence 67777888888887776554443
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=3e-20 Score=220.58 Aligned_cols=374 Identities=13% Similarity=0.011 Sum_probs=305.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002441 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (921)
Q Consensus 52 l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 131 (921)
..++.++...|++++|+..+++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 37778888889999999999999944455566666668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (921)
.++|++.++++...+|.+... ..++.++...++..+|++.++++++.+|++..++..+..++...|-...|+
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984332 223444444677777999999999999999998888877777766655444
Q ss_pred HHHH------------------------------------------------HHHHh---CCCC----HHHHHHHHHHHH
Q 002441 212 GCYE------------------------------------------------KAALE---RPMY----AEAYCNMGVIYK 236 (921)
Q Consensus 212 ~~~~------------------------------------------------~al~~---~p~~----~~~~~~la~~~~ 236 (921)
+..+ +.+.. .|.. ..+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 4433 33332 2221 223334455677
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Q 002441 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~ 310 (921)
..+++.++++.|+.+......-+ ..+....+..|...++.++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P------~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMP------DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 88999999999998775442211 11233456666668899999999999987653 2334457888999
Q ss_pred HHcCChHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (921)
...+++++|..++++..+..| +..++...++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999988533 33677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|....+++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998554
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=6.7e-21 Score=190.51 Aligned_cols=327 Identities=16% Similarity=0.160 Sum_probs=236.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002441 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
-...|.++.++|.+++|..-|+++++.+|++. +++. .....+...|++..|+.+..+.+++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 55678888899999999999999999998642 2222 223345567888999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 002441 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (921)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 302 (921)
-+...+...+.+|...|+...|+.-++.+-++..++.+..+.++.+++.+| +.+.++...+++++++|+....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-------d~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-------DAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh-------hHHHHHHHHHHHHccCcchhhH
Confidence 999999999999999999999999999998888888887777777777765 7888888888888888886543
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHH
Q 002441 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVY 378 (921)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~ 378 (921)
+-.. .++.+..+.+... .-....++|.++++..++.++.+|..+. ....+..|+
T Consensus 260 f~~Y----KklkKv~K~les~------------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPFY----KKLKKVVKSLESA------------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHH----HHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 3211 1111111111111 1122334555555555555555555322 233344455
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHh
Q 002441 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 379 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
...+++.+|+..+.++++.+|++.+++...|.+|.....|+.|+..|++|.++++++..+..
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555443
No 37
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-20 Score=205.35 Aligned_cols=390 Identities=15% Similarity=0.129 Sum_probs=320.4
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la 123 (921)
++...+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+..+++.+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4666677778888889999999999999998877888999999999999999999999999999988 77777766666
Q ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 002441 124 I-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 191 (921)
. ++.+.+..++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|+++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4 55677999999999999998542 222233455566666665432 235689999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002441 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 270 (921)
.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++...+++.+|+...+.++...+++.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55678999999999999999999999999999988874322111111100
Q ss_pred h------------------------------------hhhhhhhcCCHHHHHHHHHHHHHh--------C-----C----
Q 002441 271 D------------------------------------LGTKVKLEGDINQGVAYYKKALYY--------N-----W---- 297 (921)
Q Consensus 271 ~------------------------------------lg~~~~~~~~~~~A~~~~~~al~~--------~-----~---- 297 (921)
. .+.......+..+|+..++++... + |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0 011111222344444444443321 0 1
Q ss_pred ----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002441 298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 298 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (921)
.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11 135678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~--~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.++|+.++|.++|..++++.+.+|-
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999888888 999999999999999999999999999999999999999999998763
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.9e-20 Score=198.50 Aligned_cols=350 Identities=18% Similarity=0.234 Sum_probs=293.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------CHHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----------------MGRLAFDSFSEAV 109 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~al 109 (921)
+....+.+|++|....++++|...|.+++..++.+.+++..+-...+..- ...+-++.+-++.
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 45667788999999999999999999999999988777655543332211 1111111111111
Q ss_pred H----------hCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC
Q 002441 110 K----------LDP--------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (921)
Q Consensus 110 ~----------~~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 171 (921)
. ..+ ++.+.....+..++..+++.+..+.++..++.+|-+.+.. -..+| ++...|
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~el~ 292 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYELG 292 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHHhc
Confidence 0 012 3567888889999999999999999999999999887753 23444 667778
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002441 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
+..+-...-.+.++..|+.+..|+..|..|...|++.+|..+|.|+..++|....+|...|..+...|..++|+.+|..|
T Consensus 293 ~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002441 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (921)
Q Consensus 252 l~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 331 (921)
-++.|........ +|.-|...++++.|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+
T Consensus 373 arl~~G~hlP~LY-------lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 373 ARLMPGCHLPSLY-------LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHhccCCcchHHH-------HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 9998876544333 444555578999999999999999999999999999999999999999999999995421
Q ss_pred ----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002441 332 ----H---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 332 ----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
+ -...+.++|.++.+.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++.-+
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 1 245689999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHHHHH
Q 002441 405 YNNLGV 410 (921)
Q Consensus 405 ~~~la~ 410 (921)
-..|+.
T Consensus 526 ~~lL~~ 531 (611)
T KOG1173|consen 526 SELLKL 531 (611)
T ss_pred HHHHHH
Confidence 555553
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=3e-19 Score=192.31 Aligned_cols=372 Identities=13% Similarity=0.054 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 128 (921)
..|+.-|+.+.+.+-++-|+.+|..+++.+|.....|...+..-...|..++-..+|++++...|.....|...+..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (921)
.|+...|...+.++++.+|++.+. +...-.+.....+++.|...|.++....|. ..+|+.-+.+...+++.+
T Consensus 597 agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 555555555555555555554443 222222333445555555555555544332 344444455555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHH
Q 002441 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (921)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~ 288 (921)
+|+.+++.+++..|+....|..+|+++.++++.+.|.+.|...++..|.....|..++ .+....|...+|..+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHHH
Confidence 5555555555555555555555555555555555555555555555555444333222 222233455555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002441 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (921)
++++.-.+|++...|.....+-.+.|+.++|...+.++++..|++...|..-..+.-.-++-.+++..+ +....++
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL----kkce~dp 817 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL----KKCEHDP 817 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH----HhccCCc
Confidence 555555555555555555555555555555555555555555555554444444333333333333322 2233445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.++...|..+....++++|.++|.++++.+|++.++|...-..+...|.-++-.+.|.++....|.+...+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555544433
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=2.8e-19 Score=200.73 Aligned_cols=338 Identities=15% Similarity=0.129 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002441 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
...++..|..++..|++++|...+.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999876 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (921)
.++....++|++++|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.++++..|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999999999999999999999999999999999999999832 223445577788
Q ss_pred HCCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh--CCC--------------
Q 002441 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~-------------- 298 (921)
..++-+.|++.++.++....+ ..+....+ +.++.+...++.+.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~-------ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNIL-------AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHH-------HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883222 11222222 33334455677776665544430 000
Q ss_pred ------------CHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002441 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 299 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
+..+ ...++.+..+..+..+++..+..--...+ +..+.+..++.++...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 44444445555555555554443333223 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002441 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 365 p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.+|..+|+.++|.+.+++...-++
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 54 4679999999999999999999999999999999999999999999999999999999999874443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.2e-18 Score=187.84 Aligned_cols=380 Identities=13% Similarity=0.052 Sum_probs=313.8
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------------------
Q 002441 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (921)
+..-|+.|.+.+.++-+.-|.+.++|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34568888888888888888888888888888888887777666666655321
Q ss_pred ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHH
Q 002441 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (921)
Q Consensus 113 ---------------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~ 177 (921)
.+.-..|..-+..+...+.++-|...|..+++..|..... +...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 0112334555666667777778888888888888876654 333444444557888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 002441 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (921)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (921)
..+++++..-|.....|...+..+...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88888988888888888888888888899999999999999999998888888888888889999999999998887776
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002441 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (921)
Q Consensus 258 ~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 337 (921)
. .+++.-..+...+++.++|+.+++++++..|+....|..+|+++..+++.+.|...|...++..|.++..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 34444445555577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------
Q 002441 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------------- 401 (921)
..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|.....+|++..|++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHH
Q 002441 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (921)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~ 456 (921)
+.++...|.++....++++|.++|+++++++|++.+++..+. ..++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy--kfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY--KFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH--HHHHHhCCHHH
Confidence 456777899999999999999999999999999999987642 33445565444
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-19 Score=192.56 Aligned_cols=365 Identities=19% Similarity=0.169 Sum_probs=297.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
+.-.+-.....|...|+|++|++--.+..+++|.-+..|..+|..++-+|+|++|+..|.+.++.+|++...+..++.++
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 33344456678889999999999999999999999999999999999999999999999999999999999888888776
Q ss_pred HHcC---------------------CHHHHHHHHHHHHhcCCCChHh---------------------------------
Q 002441 127 KDEG---------------------RLVEAAESYHKALSADPSYKPA--------------------------------- 152 (921)
Q Consensus 127 ~~~g---------------------~~~~A~~~~~~al~~~p~~~~~--------------------------------- 152 (921)
.... ++-.....|.+.++..+.++..
T Consensus 115 ~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~ 194 (539)
T KOG0548|consen 115 LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEIL 194 (539)
T ss_pred hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccC
Confidence 3220 0001111222222111111000
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002441 153 -------------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 153 -------------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (921)
....+.-...+|+..+...++..|++.|.+++.++ .+...+.+.+.+|+..|.+
T Consensus 195 ~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~ 273 (539)
T KOG0548|consen 195 ASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKY 273 (539)
T ss_pred CCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHH
Confidence 11123345678999999999999999999999999 8888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcC
Q 002441 208 DTALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (921)
Q Consensus 208 ~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~ 280 (921)
.+++....++++..... ..+...+|..|...++++.|+.+|++++..... .+......
T Consensus 274 ~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk 338 (539)
T KOG0548|consen 274 AECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLK 338 (539)
T ss_pred HHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHH
Confidence 99999999988765432 234445677888899999999999998876554 11222234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (921)
..++++...+...-.+|.-..--...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.+++++..|++..+++
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67788888888888888888878888999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
++++|++...|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|+..+.......+.+++
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998876444445555555
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.2e-19 Score=181.25 Aligned_cols=384 Identities=14% Similarity=0.105 Sum_probs=314.1
Q ss_pred cCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------
Q 002441 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD---------- 112 (921)
Q Consensus 43 ~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------- 112 (921)
....+.+.....+.+|...++-++|+....++.... ..+.....++..+-.-++..++.-.+...+...
T Consensus 92 ~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 92 PEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred CCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 344578888899999999999999999877654322 234455555555555555445444444443322
Q ss_pred ---------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHH
Q 002441 113 ---------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (921)
Q Consensus 113 ---------------------p~~~~a~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (921)
|...+.+ ..++.++....-+.-+..++-.-....|++... +..+|.+++
T Consensus 171 l~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~~ 243 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCLY 243 (564)
T ss_pred HHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhhh
Confidence 2222222 223333333344444555555556667776553 778899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002441 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
..|++.+|+..|+++..++|......-..|.++...|++++-.......+........-|+--+...+..+++..|+.+-
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002441 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (921)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 328 (921)
+++++.+|.+..++...+.++.. .++.++|+-.|+.+..+.|...+.|..|..+|...|++.+|...-+.+++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 99999999998776665555555 56999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 329 FNPHCAEACNNLG-VIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 329 ~~p~~~~~~~~la-~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
..|.++.++..+| .++ ..-.--++|.++++++++++|....+-..++.++...|.+++++..+++.+...|+ ...+.
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~ 475 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN 475 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence 9999999999886 443 34455689999999999999999999999999999999999999999999999987 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
.||.++...+.+++|.++|..|+.++|++..+...+
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999999999999998776553
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=2e-16 Score=193.17 Aligned_cols=395 Identities=14% Similarity=0.077 Sum_probs=317.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...|+.... | +...|..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 3456677777778899999999999999887653 2334444556677888999999999887654 4 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYS 202 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 202 (921)
..+.+.|++++|...|+++.+...... ..++..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKAD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999988654322 224677778888999999999999999876533 6889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhhhhhhh
Q 002441 203 ELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
+.|++++|++.|+++.+.. .-+...|..+...|.+.|++++|.+.|+++... .|+. . .|..+...+.
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~ 590 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACA 590 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHH
Confidence 9999999999999997653 124788999999999999999999999999763 4542 2 3344445566
Q ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 278 LEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
+.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 6889999999999999876 456788999999999999999999999999876 34 4778999999999999999999
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 355 ECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 355 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|.+.|++..+.
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999864 346789999999999999999999999998764 454 778999999999999999999999988654
Q ss_pred --CCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 002441 432 --DPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (921)
Q Consensus 432 --~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~ 462 (921)
.|+. ..+..++ ..+...+..+...+.+.
T Consensus 749 Gi~Pd~-~Ty~sLL--~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 749 GLCPNT-ITYSILL--VASERKDDADVGLDLLS 778 (1060)
T ss_pred CCCCCH-HHHHHHH--HHHHHCCCHHHHHHHHH
Confidence 4543 2333332 34555666666554443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=5.9e-18 Score=190.87 Aligned_cols=302 Identities=12% Similarity=0.005 Sum_probs=237.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 002441 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 197 (921)
....|.+....|+++.|.+.+.++.+..|+.... +...|.++...|++++|..++.++.+..|+.. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3455677778888888888888888877764433 44557777778888888888888888888764 456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002441 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.....+.....+.. ....+ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HH
Confidence 8888899999999999999999999999999999999999999999999988888775443332211111 11111 11
Q ss_pred hcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHH
Q 002441 278 LEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLD 351 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~ 351 (921)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|++.++++++..|++.... ..........++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 22333445567777777776 5899999999999999999999999999999999987532 22333344568899
Q ss_pred HHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 352 KAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 352 ~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
++++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 889999999999999999999999 57788888655 66999999999999999999999
Q ss_pred Hhhc
Q 002441 428 CLKI 431 (921)
Q Consensus 428 al~l 431 (921)
++..
T Consensus 396 ~l~~ 399 (409)
T TIGR00540 396 SLGL 399 (409)
T ss_pred HHHH
Confidence 8764
No 46
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=1.6e-18 Score=194.98 Aligned_cols=375 Identities=21% Similarity=0.181 Sum_probs=302.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 140 (921)
+++...|+..|-+++.+++..+.++..+|..|...-+...|..+|++|.++++.+..+....+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.+-+..|.... ...+...|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~-----k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFAC-----KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHH-----HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 66555554322 1225558889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC----
Q 002441 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---- 296 (921)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..++++.++..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888888889999888888887777777777777766431
Q ss_pred ----CCCHHHHHHHHHHHHH-----------------------cCC---hH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002441 297 ----WHYADAMYNLGVAYGE-----------------------MLK---FD---MAIVFYELAFHFNPHCAEACNNLGVI 343 (921)
Q Consensus 297 ----~~~~~~~~~la~~~~~-----------------------~g~---~~---~A~~~~~~al~~~p~~~~~~~~la~~ 343 (921)
.++...|..++..+.- ++. .+ -+.+++-..+++.. .+..|+++|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGin 784 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGIN 784 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHH
Confidence 1222222222222110 010 01 22333333333322 25677788877
Q ss_pred HHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 344 YKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 344 ~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
|+. +.+...|+.++++++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.++|.++...
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 765 2344578888888888888888888888887 5668888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 416 GSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
.+++.|...|.++..++|.+...+...
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 888888888888888888887665543
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.8e-18 Score=170.91 Aligned_cols=382 Identities=18% Similarity=0.155 Sum_probs=291.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHHhC--CCC----
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (921)
-+-+|..+++...|+...+++..+++..|++..+|..+..++...- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 3557889999999999999999999999999999999988875432 22245544432 12111 100
Q ss_pred ---------HH-----------HHHHHHHH-HHHcCCHHHHHHH--------------------------------HHHH
Q 002441 116 ---------AC-----------AHTHCGIL-YKDEGRLVEAAES--------------------------------YHKA 142 (921)
Q Consensus 116 ---------~~-----------a~~~la~~-~~~~g~~~~A~~~--------------------------------~~~a 142 (921)
.. +....... -.+-|-.+.|+.. |-.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 00 00000000 0111222222211 1111
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 002441 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 143 l~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
-.++|+.-.....+...++.. +++..++...|-......++.+ |. +..-...+|.||+.+|-+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFey--~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFEY--LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 222332222222233333332 3444566666665555444431 11 23344679999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHH
Q 002441 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (921)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~a 292 (921)
.++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+......++ +++...++.++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A-------Ri~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA-------RIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH-------HHHHHHHhHHHHHHHHHHH
Confidence 99999998875 889999999999999999999999999999999876554444 4555567999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 002441 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 369 (921)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 369 (921)
++.+|.+.++...+|.-|+.-++.+-|+.+|++++++.-.+++.++++|.+++..++++-++..|++++.... .-.+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998744 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877774
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=1.4e-17 Score=187.83 Aligned_cols=304 Identities=12% Similarity=0.009 Sum_probs=189.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~ 125 (921)
.+...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|..+++++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445566677777777777777777777777776666667777777777777777777777777777664 355556777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHH
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVY 201 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~ 201 (921)
+...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++..+. ....-+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777777654 555566666667777777777777766433332221 111122
Q ss_pred HHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002441 202 SELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
...+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~------------- 302 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP------------- 302 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-------------
Confidence 333444445556666666655 467777777777777777777777777777777765421100
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 002441 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVE 355 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~ 355 (921)
..........++.+.+++.++++++..|+++ .....+|+++.+.|++++|.+
T Consensus 303 --------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 303 --------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred --------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 0011111222344555666666666666666 556666666666666666666
Q ss_pred HHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 356 CYQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 356 ~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+|+ ++++..|+... +..+|.++.+.|+.++|.+++++++..
T Consensus 357 ~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 357 AFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666 35555555443 336666666666666666666666543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=1.6e-20 Score=201.31 Aligned_cols=261 Identities=21% Similarity=0.201 Sum_probs=122.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.++.++...|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888899999999999766544 488899999999999999999999999999999999988888888888 7999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChH
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFD 317 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~ 317 (921)
++++|+.+++++.+..++ +..+ .....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l-------~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYL-------LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccc-cchh-------hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999998876643 2222 223344556789999999999977655 678889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+++++++.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998763
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=3.3e-17 Score=183.75 Aligned_cols=303 Identities=11% Similarity=0.007 Sum_probs=237.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 002441 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l 197 (921)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+...+ ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566777789999888777765554322 221 13334555578899999999999999888887533 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH-HHHHHhhhhhh
Q 002441 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKV 276 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~lg~~~ 276 (921)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+....+......+ ..++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999988888766544332211 12332222222
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
....+.+...+.++...+..|+++.+...++..+...|+.++|...++++++. +.+......++.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22344555566666665667789999999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999995 456789999999999999999999998764
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.8e-16 Score=172.10 Aligned_cols=376 Identities=18% Similarity=0.201 Sum_probs=281.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
....++..+.-.+..++|.+.++..+++++..|++.+.+..+|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999775 66777777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhh
Q 002441 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (921)
Q Consensus 207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~ 278 (921)
+..|...++...+.. |. ..+.......+..+.|.+++|++.+.+--...-+ .+ ......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------kl-a~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------KL-AFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH------HH-HHhhhHHHHHHH
Confidence 999999988877654 32 2345555666777888888887766543221111 11 122334566667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCC----------------HHHHHHHH
Q 002441 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHC----------------AEACNNLG 341 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~----------------~~~~~~la 341 (921)
.+++++|...|...+..+|++...+..+-.++....+--++. ..|...-+..|.. ...+-..-
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 789999999999999999999988887777775333333444 4444443332211 00000000
Q ss_pred HHHHHc-------------CCHHHHHHHHHHHHh-------hC------------CCC--HHHHHHHHHHHHHcCCHHHH
Q 002441 342 VIYKDR-------------DNLDKAVECYQMALS-------IK------------PNF--SQSLNNLGVVYTVQGKMDAA 387 (921)
Q Consensus 342 ~~~~~~-------------g~~~~A~~~~~~al~-------~~------------p~~--~~~~~~la~~~~~~g~~~~A 387 (921)
.-.+.. ++..+. ..+++.+. -. |-. ...++.++.-+...|+++.|
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 000001 111111 12222221 11 111 22456677778888888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 388 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
..+++.|+...|+..+.+...|+++...|++++|..+++++.++|-.|+-
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 88888888888888888888888888888888888888888888765543
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=1.7e-17 Score=200.86 Aligned_cols=400 Identities=14% Similarity=0.020 Sum_probs=318.0
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
.+...+..+...+...++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~ 197 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG 197 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence 466777888888888999999999998887642 23577888888999999999999999988753 35667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChH-----------------------------hHHHHHHHHHHHHHHHHHcCChHH
Q 002441 125 LYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQD 175 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------------------~~~~la~~~~~lg~~~~~~g~~~~ 175 (921)
.|.+.|++++|++.|+++.+....... ....-..++..+...|.+.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999988764321100 000012246677888999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 002441 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (921)
|.+.|++.. +.+..+|..+...|.+.|++++|++.|+++.+.. .-+...+..+...+.+.|++++|.+.+..+++.
T Consensus 278 A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 278 ARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998763 4578899999999999999999999999997653 224678999999999999999999999999987
Q ss_pred CC-ChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CC
Q 002441 255 SP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PH 332 (921)
Q Consensus 255 ~p-~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 332 (921)
.- .+. .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|+++.+.. .-
T Consensus 355 g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 355 GFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred CCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 52 222 2344556667778899999999998754 356789999999999999999999999998753 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 410 (921)
+...+..+...+.+.|+.++|.++|+...+... .+...|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~ 502 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLT 502 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHH
Confidence 477788899999999999999999999986432 23567889999999999999999998764 23343 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHH
Q 002441 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 465 (921)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~~ 465 (921)
.+...|+++.|...+++.+++.|++...+.. +.-.|...|..++..+..+...
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998766543 3446777787777666554443
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=1.4e-15 Score=185.95 Aligned_cols=362 Identities=13% Similarity=0.044 Sum_probs=301.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 002441 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~ 133 (921)
...+...|..++|..+|+.... .+...+..+-.++...|++++|...|+++.+... .+...+..+...|.+.|+++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3456778999999999987654 4577888888899999999999999999988754 36778999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
+|.+.|+++.+...... ...|..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.+
T Consensus 490 ~A~~vf~eM~~~Gv~Pd------vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEAN------VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999987643211 12477778888999999999999999876532 247789999999999999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002441 213 CYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 213 ~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
.++++... .|+ ...+..+...|.+.|++++|.+.|+++.+... .+... |..+...+.+.|++++|+.
T Consensus 564 lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t-------ynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 564 VLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH-------HHHHHHHHHhcCCHHHHHH
Confidence 99999763 344 67888999999999999999999999988753 23333 3444555666789999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 002441 288 YYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK- 364 (921)
Q Consensus 288 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 364 (921)
+|+++.+.. .-+...|..+...+.+.|++++|.++++++.+.. +.+...|..+...|.+.|++++|++.|++..+..
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998763 2246788999999999999999999999999874 4468899999999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
..+...|..+...|.+.|++++|++++++.... .|+ ...+..+...+.+.|++++|.+.++++++....
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 234678999999999999999999999998765 454 667888889999999999999999999886443
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-17 Score=170.01 Aligned_cols=310 Identities=15% Similarity=0.109 Sum_probs=268.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHH
Q 002441 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (921)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~ 166 (921)
.++.++.....+..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|..... .-..|..
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~L 275 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVL 275 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHH
Confidence 345555555555666666767777789999999999999999999999999999999999987665 4445666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002441 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (921)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (921)
+...|++++-...-...+........-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 77889999998888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCChHHHHHHHH
Q 002441 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYE 324 (921)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~ 324 (921)
.|+.+..+.|.....+..+. ..|...+++.+|....+.+++..|.++.++..+| .++. .-.--++|.++++
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~-------hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLF-------HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHhcchhhHHHHHHHH-------HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999998766555444 4455578999999999999999999999998886 4443 3345689999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002441 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 325 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
+++.+.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+++|..++.++|++..+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 999999999999999999999999999999999999998876 4678999999999999999999999999999998777
Q ss_pred HHHHHHH
Q 002441 405 YNNLGVL 411 (921)
Q Consensus 405 ~~~la~~ 411 (921)
...+-.+
T Consensus 508 l~Gl~~l 514 (564)
T KOG1174|consen 508 LRGLRLL 514 (564)
T ss_pred HHHHHHH
Confidence 6555443
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=6.2e-17 Score=179.10 Aligned_cols=349 Identities=16% Similarity=0.100 Sum_probs=291.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCC-----CCHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a 118 (921)
..+.|...+..+...|.-..|+.+.+..+... |.++..+...+ .|....+.+++++.+..+++...- -.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 56789999999999999999999999999888 77766555544 555678999999999999998431 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002441 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (921)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (921)
+..+|.+|..+- ...++++.++++++.+|.++.+ .+.++.-|..+++.+.|.++.+++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 888887775432 3567899999999999999876 677788888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------
Q 002441 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---------- 256 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------- 256 (921)
..+++.+|..++.++...+++.+|+...+.+++..++|.........+-...++.++|+..+...+..-.
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 5567999999999999999999999999999999888766555555555556666666665544443211
Q ss_pred ----------------------------------------------------ChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 257 ----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 257 ----------------------------------------------------~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
.....+...-..+...+..+...+..++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1111222233344455667777889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 002441 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 362 (921)
|..++.++-.+.|..+..|+..|.++...|+.++|.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002441 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (921)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 402 (921)
++|.+.++|+.+|.++.++|+.++|.++|+.++++.+.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987764
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=1.4e-17 Score=194.99 Aligned_cols=248 Identities=15% Similarity=0.030 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHH
Q 002441 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (921)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (921)
+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence 44555555555555555555555555544322 22455555555555555555443 334444444
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002441 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555544444444455555555555555
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002441 249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 249 ~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
+++++.. |+++..+..++.++.. .|++++|...+++.....|....+...++..|...| ++|...+++.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5555443 4444444455554444 235555555555555555555555555555555555 24555555444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002441 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (921)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (921)
+..............++.-.|+-+.+..+ +++.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 43222221222245555555555555555 44443
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=1.5e-16 Score=192.64 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=294.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l 122 (921)
+...|......+...|++++|+.+|+.+....+ -+...+..+..++...++.+.|.+.+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 445677778889999999999999999876543 36678888899999999999999999988875 34 57788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH----------------------------HHHHHHHHHcCChH
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL----------------------------TDLGTSLKLAGNTQ 174 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----------------------------~~lg~~~~~~g~~~ 174 (921)
...|.+.|++++|.+.|++..+ |+ ...+..+...+ ..+...+...|...
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 22 22222222222 22223445567777
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 002441 175 DGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (921)
Q Consensus 175 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (921)
.+.+.+..+++.. ..+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|+.++|++.|++..+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 8888777776653 2356778889999999999999999998763 45678999999999999999999999999876
Q ss_pred h--CCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002441 254 V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (921)
Q Consensus 254 ~--~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (921)
. .|+. . .+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 319 ~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 319 SGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred cCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 4 3442 2 34444455566789999999999999876 55677899999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 002441 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNN 407 (921)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~ 407 (921)
.+...|+.+...|.+.|+.++|++.|++..+.. .-+...+..+..++.+.|+.++|.++|+...+..+ -+...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 356789999999999999999999999988753 22466788888999999999999999999987532 23567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 408 LGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+..+|.+.|++++|.+.+++. ...|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 999999999999999999875 23444
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.2e-19 Score=194.53 Aligned_cols=261 Identities=20% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 128 (921)
.+..|..++..|++++|++++++.+.. .|++...|..+|......+++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 345567777777777777777554433 356666666667666677777777777777776666666666666666 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCC
Q 002441 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 206 (921)
.+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 66667776666666554432 111 2333344555566666666666655433 4455566666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002441 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
.++|+..|+++++.+|++..+...++.++...|+.+++.+.++...+..|+
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----------------------------- 212 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD----------------------------- 212 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----------------------------
Confidence 666666666666666666666666666666666666655555555444433
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
++..+..+|.++..+|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..++++++
T Consensus 213 ------------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 ------------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ------------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ------------HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333444445555555555555555555555555555555555555555555555555555544
No 59
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=2.5e-16 Score=195.49 Aligned_cols=389 Identities=15% Similarity=0.066 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGIC 91 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~ 91 (921)
...|-.+...|.+.|++++|+.+|+++.+. .|+ +...+..+...
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 334555566666677777777777766553 222 22233333444
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHhHHHHHHHHHHHHHHHHH
Q 002441 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKL 169 (921)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~ 169 (921)
|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..+-..+..
T Consensus 333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~ 401 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACAC 401 (857)
T ss_pred HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhc
Confidence 444444444444444432 1233344444455555555555555555443322 22211 2222223444
Q ss_pred cCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002441 170 AGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
.|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555555554422 2345667777888888888888888887643 34567888888888899999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHH----------------------------hhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002441 249 ERCLAVSPNFEIAKNNMAIALT----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~~~----------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
++++...+.+...+..+..++. .+-..|.+.|++++|...|++. +.+.
T Consensus 479 ~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~ 554 (857)
T PLN03077 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDV 554 (857)
T ss_pred HHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCCh
Confidence 8887543333333332222222 2335677788999999888875 5567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 002441 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGV 376 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 376 (921)
..|..+...|...|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ -+...|..+..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 88999999999999999999999988875 344 45566677788889999999999998874432 23578888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHH
Q 002441 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (921)
Q Consensus 377 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~ 456 (921)
++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++-.|...|..++
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya~~g~~~~ 709 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYADAGKWDE 709 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHHHCCChHH
Confidence 999999999999998875 35555 6677777778888899999999999999999987765443 3445556666555
Q ss_pred HHH
Q 002441 457 LFE 459 (921)
Q Consensus 457 ~~~ 459 (921)
..+
T Consensus 710 a~~ 712 (857)
T PLN03077 710 VAR 712 (857)
T ss_pred HHH
Confidence 443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.4e-17 Score=194.87 Aligned_cols=250 Identities=12% Similarity=0.004 Sum_probs=154.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002441 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
+.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777888888888888777777777766533 2367777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002441 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (921)
++|+..|+++++++|++..++..++.++. ..|++++|+..++++++++|.++..+..++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-------~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLF-------MAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 77777777777777776654444333333 34566666666666666666665555555555555666666666
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 322 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
.+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|...|+ +|...+++.++..-.
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 666666553 55566666666666666666666666666666666655566666666665553 555555554443222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
...-......+|.-.|+.+.+..+ +++.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 222222255555555665555554 44443
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=185.93 Aligned_cols=240 Identities=20% Similarity=0.255 Sum_probs=184.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 002441 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (921)
+..|..+++.|+..+|.-.|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 002441 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 318 (921)
-.+|+.++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764311000000000000000111123444556666666666 567777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002441 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 398 (921)
|+.+|+.++...|++...|+.||-.+....+.++|+..|++|+++.|.+..++++||..+..+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777764
Q ss_pred CC
Q 002441 399 PT 400 (921)
Q Consensus 399 p~ 400 (921)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 43
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=171.59 Aligned_cols=245 Identities=19% Similarity=0.255 Sum_probs=225.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
...+|.+|...|.+.+|.+.++..++..| .++.+..|+.+|....+...|+..+.+.++..|.+...+...++++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 35689999999999999999999998776 47889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
++++|.++|+.+++.+|.+.++.. .++..|+-.++.+-|+.+|++.++..-.+++.+.++|.+++..++++-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiA-------cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIA-------CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeee-------eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999876543 3445556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002441 320 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 320 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
+..|++++.... ..+++|+++|.+....|++..|..+|+-++..++++.+++++||.+-.+.|+.++|..+++.+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998743 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 002441 397 ANPTYAEAYNNLGVLY 412 (921)
Q Consensus 397 ~~p~~~~~~~~la~~~ 412 (921)
..|.-.+..++++.+-
T Consensus 458 ~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFMS 473 (478)
T ss_pred hCccccccccceeEEe
Confidence 9999888888776543
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.5e-18 Score=173.49 Aligned_cols=299 Identities=16% Similarity=0.137 Sum_probs=246.5
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 42 ~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 121 (921)
......++.....+..+++..+|.+|+..|..+++..|+++..|...+.+++..+++++|.-..++.++++|.....+..
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 33445678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHHHHHHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLG 198 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la 198 (921)
.+.++...++..+|.+.++. ..+ + ....|+..+++.+..+ |....+....+
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~--------~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka 176 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKS--------KQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKA 176 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhh--------hhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhh
Confidence 99999999999999888871 111 0 1223344444443332 44456667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH-----HHHHHHhhh
Q 002441 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-----MAIALTDLG 273 (921)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----la~~~~~lg 273 (921)
.|+...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+....... .......-|
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999987644221 122334456
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 274 TKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 349 (921)
+-..+.|++.+|.+.|..++.++|++ +..|.+++.+...+|+..+|+...+.++++++....++...|.++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888888875 35688888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhCCC
Q 002441 350 LDKAVECYQMALSIKPN 366 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~ 366 (921)
|++|++.|+++++...+
T Consensus 337 ~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 88888888888887655
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=186.76 Aligned_cols=266 Identities=21% Similarity=0.267 Sum_probs=218.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
+...-+..|..++++|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 204 (921)
...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764221000000000000000111223445566777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
|+|++|+++|+.|+...|++...|..||-++....+.++|+..|++|+++.|.+..++++++..+.++| .|++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG-------~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG-------AYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh-------hHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888865 9999
Q ss_pred HHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHH
Q 002441 285 GVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 285 A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A 319 (921)
|.++|-.++.+.+.. ..+|..|-.++...++.|-+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999876541 23555555555555655543
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=2.9e-16 Score=176.12 Aligned_cols=297 Identities=10% Similarity=-0.032 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACAH-THCGIL 125 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-~~la~~ 125 (921)
+...+..|...+..|+|++|.+...+.-+..+ ++..++.+ +......|+++.|..+|+++.+.+|++..+. ...+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 33445555555555666666655554433221 22332333 3333556666666666666655555543222 233555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HH
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NL 197 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~l 197 (921)
+...|++++|...++++.+..|+++.+ +..++.+|...|++++|++.+.+..+....++.... .+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 555666666666666666666655544 333344444455566666555555554433322111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002441 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
........+-+...+.++..-+..|+++.+...++..+...|+.++|.+.++++++..+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--------------------- 294 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--------------------- 294 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------------
Confidence 11111112222222333332233344555555555555555555555555555555332
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (921)
+.......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|
T Consensus 295 ---------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 295 ---------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred ---------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22222222221 2255555555555555555555555555555555555555555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
+++++..|++. .+..++.++.++|+.++|.++|++++.+
T Consensus 352 e~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555532 2334555555555555555555555543
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.7e-17 Score=157.80 Aligned_cols=215 Identities=25% Similarity=0.244 Sum_probs=198.7
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 42 ~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 121 (921)
.....-.+..+.+|..|++.|++..|.+.++++++.+|++..+|..++..|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 44445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (921)
.|..++.+|++++|...|++++. +|.... .+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALA-DPAYGE----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHh-CCCCCC----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 99999999999999999999986 454443 2556899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHH
Q 002441 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (921)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (921)
++.|+|..|..++++.....+-..+.+.....+-...|+-+.+.++=.+.-...|...+.
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999988888888999889999999999999999888888889986643
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.4e-15 Score=152.35 Aligned_cols=321 Identities=20% Similarity=0.218 Sum_probs=255.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002441 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (921)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (921)
.|..+....+.++|++.|.++++.+|...++...||.+|...|+.+.|+.+-+..++. |+. ..+...+|.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4556667789999999999999999999999999999999999999999998877654 432 4578899999999
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002441 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~ 312 (921)
.|-++.|...|....+...--. .++..+-.+|....++++|++..++..+..++. +..|..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999999876433222 244556667777899999999999999988765 3578889999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
..+.+.|...++++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+.++.+..+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 678899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHH-HHHHHh
Q 002441 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW-GKRFMR 470 (921)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~~~~~~~~~~~~-~~~~~~ 470 (921)
.++.+..++ +.+...++.+-....-.+.|..++.+-+...|+-...+.-.-+.+.-..+|...+.+...+.. ++++.+
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 999999887 566677777777888889999999999999998543322111112222233333333322222 222211
Q ss_pred hccCCCCCCCCCCCCCCceeeccCCCcccchhh
Q 002441 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVS 503 (921)
Q Consensus 471 ~~~~~~~~~~~~~~~r~lriGyvS~d~~~H~v~ 503 (921)
...-|.-+.||-+.-|.+|.-+
T Consensus 352 -----------~~~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 352 -----------KPRYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred -----------cCCceecccCCcceeeeeeCCC
Confidence 1123566788888888877643
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.7e-16 Score=170.50 Aligned_cols=232 Identities=18% Similarity=0.124 Sum_probs=159.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (921)
..++.+.++..+.+++...+-+++. .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 3456788888888888755543332 3556888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002441 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
++|+..|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++... .+.. .....+++++|+.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~~~~---l~~~~~~~~~A~~ 186 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-----LWLY---LAESKLDPKQAKE 186 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHH---HHHccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876211 1111 1223467788888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (921)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (921)
.+++.....+.. .+. .+.++...|+..++ ..++.+. ++.|...++|+++|.++...|++++|+.+|+++
T Consensus 187 ~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 187 NLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 886665443221 111 24444445554333 1222222 333344455555555555555555555555555
Q ss_pred HhhCC-CCHHHHHHH
Q 002441 361 LSIKP-NFSQSLNNL 374 (921)
Q Consensus 361 l~~~p-~~~~~~~~l 374 (921)
++.+| ++.+..+.+
T Consensus 263 l~~~~~~~~e~~~~~ 277 (296)
T PRK11189 263 LANNVYNFVEHRYAL 277 (296)
T ss_pred HHhCCchHHHHHHHH
Confidence 55554 334433333
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.77 E-value=1.6e-16 Score=178.99 Aligned_cols=388 Identities=16% Similarity=0.165 Sum_probs=287.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHH-----HHhCCHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN--------------------VEAHIGKGICL-----QMQNMGRLAF 102 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~~~~~la~~~-----~~~g~~~~A~ 102 (921)
.......+.+......|.+|...+.......-++ ....+..+..+ ....+...|+
T Consensus 399 ~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al 478 (1238)
T KOG1127|consen 399 ASNQRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALAL 478 (1238)
T ss_pred hhhhhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3335556666667777777777777665554211 11111111111 2344578899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002441 103 DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (921)
Q Consensus 103 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (921)
..|-+++++++..+.++..+|.+|...-+...|..+|+++.++++.+..+ ....+..|....+++.|......
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766 44556667778999999999766
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHH
Q 002441 183 ALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (921)
Q Consensus 183 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (921)
+-+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+.|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 66666543 3456779999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 002441 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---- 329 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 329 (921)
..+..+..... .|++.+|+..+...+..... ..+.+...+..+...|-..+|..+++++++.
T Consensus 632 ~~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 632 GRFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 76666655555 46999999999888866443 3455666666666667677777777776654
Q ss_pred ---C-CCCHHHHHHHHHHHH-------------------H----cCCH------HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 330 ---N-PHCAEACNNLGVIYK-------------------D----RDNL------DKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 330 ---~-p~~~~~~~~la~~~~-------------------~----~g~~------~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
. .++...|..++..+. . .+.. --|.+++-..+++-.. +..|+++|.
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhH
Confidence 1 222223322222211 1 1111 1244444444444322 668899998
Q ss_pred HHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhh
Q 002441 377 VYTV--------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (921)
Q Consensus 377 ~~~~--------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~ 448 (921)
-|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....+.|+ ++.+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl--gvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL--GVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc--ceeE
Confidence 8776 2345689999999999999999999999998 666999999999999999999999988884 4445
Q ss_pred ccCCC
Q 002441 449 INEGH 453 (921)
Q Consensus 449 ~~~~~ 453 (921)
+...+
T Consensus 861 l~n~d 865 (1238)
T KOG1127|consen 861 LENQD 865 (1238)
T ss_pred Eeccc
Confidence 54433
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=2.1e-15 Score=163.98 Aligned_cols=348 Identities=14% Similarity=0.107 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002441 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
...++..+.-.+..++|.+.++..+.+++..|++.+.+...|..+...|+-++|....+.++..++.+.-. |.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HH
Confidence 34667777778899999999999999999999999999999999999999999999999999988887554 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (921)
.+|.++....+|++|+++|+.|+.+.|++..++..++.+..++++++-....-.+.++..|..-..|...+..+...|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002441 242 ESAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (921)
Q Consensus 242 ~~A~~~~~~al~~~---p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 318 (921)
..|....+...+.. |+.... ....+......+....|..++|++.+.+--...-+........+.++..++++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~--e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDY--EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 99999888877665 332222 2233444445566777888888887776544444445566778999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHH-------------HHHHHHHHH---HHc
Q 002441 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFSQ-------------SLNNLGVVY---TVQ 381 (921)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~-------------~~~~la~~~---~~~ 381 (921)
|...|...+..+|++...+..+-.++.+-.+--+++ ..|...-+..|.... ....+..++ .+.
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 999999999999999998888888876333334444 455544443322100 000000000 001
Q ss_pred -------------CCHHHHHHHHHHHHHh-----C--------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 382 -------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 382 -------------g~~~~A~~~l~~al~~-----~--------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
.+..+. ..+++.+.. . |-. ...++.++.-+...|+++.|..+...
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111111 133333221 1 111 34677889999999999999999999
Q ss_pred HhhcCCCChhhH
Q 002441 428 CLKIDPDSRNAG 439 (921)
Q Consensus 428 al~l~P~~~~a~ 439 (921)
|+...|.-.+.+
T Consensus 397 AIdHTPTliEly 408 (700)
T KOG1156|consen 397 AIDHTPTLIELY 408 (700)
T ss_pred HhccCchHHHHH
Confidence 999999877655
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=4e-16 Score=162.17 Aligned_cols=207 Identities=20% Similarity=0.167 Sum_probs=189.6
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.......++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
.++...|++++|+..+++++...+... ....+..+|.++...|++++|...+.++++.+|++..++..+|.++..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 999999999999999999998543211 123467789999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002441 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
.|++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999999999999988889999999999999999999999888776554
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-17 Score=168.75 Aligned_cols=278 Identities=19% Similarity=0.200 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (921)
.+.-....|..++...+|.+|+..|..+++..|+++..|.+.+.+++..++|++|....++.++++|.....+...+.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34446667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHH------------HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002441 236 KNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al------------~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 303 (921)
..+++..+|.+.++..- .+.|.+... -....+-..-+.++...+++++|...--..+++++.+.+++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 99998888887766221 001110000 00011112223444556799999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Q 002441 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---- 367 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 367 (921)
+..|.++....+.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 9999999999999999999999999998763 455667888899999999999999999999986
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+..|.+++.+...+|+..+|+...+.++++++....++...|.|+..++++++|++.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999999999999999999999999998776
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.9e-14 Score=154.99 Aligned_cols=392 Identities=14% Similarity=0.042 Sum_probs=271.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
....++.--..+...++|++|.+...+++...|++..++...-.++...++|++|+...++-....-.+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 457888889999999999999999999999999999999999999999999999995544432222122 2237899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------------------- 187 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 187 (921)
++++..++|+..++ ..++.+... +...+.+++++++|++|+..|+..++.+
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 233433333 4455666677799999999998875442
Q ss_pred -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHCCC
Q 002441 188 -----------PH-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (921)
Q Consensus 188 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~ 240 (921)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 35678999999999999999999999995431 11 12367788999999999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH------------------------------------------Hhhhhhhhh
Q 002441 241 LESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKL 278 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~------------------------------------------~~lg~~~~~ 278 (921)
.++|...|...++.++.+.........-+ .+.+.+...
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776542211111000 000001111
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 357 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 357 (921)
.+..+++.+.....-...|...--.............+.+|+.++....+.+|.+ ..+...++.+.+.+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111111111111112211111222222333336888888888888888887 778888999999999999999999
Q ss_pred HHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 358 QMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 423 (921)
Q Consensus 358 ~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (921)
...+.. -...+.+-..+-..++..++-+.|...+.+++.- .+.....+..++..-.+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 843321 1122444455555677777766677777766654 22223455667777788899999999
Q ss_pred HHHHHhhcCCCChhhHhhHHHHhhhc
Q 002441 424 AYEQCLKIDPDSRNAGQNRLLAMNYI 449 (921)
Q Consensus 424 ~~~~al~l~P~~~~a~~~~l~a~~~~ 449 (921)
.+++.++.+|++.++...++.+..++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 99999999999999988887777665
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=6e-16 Score=166.25 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=152.2
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 61 RNKFVDALALYEIVLEKDS----GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 136 (921)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888888886433 235678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (921)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (921)
..|+++++++|++..+ +..+|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+++
T Consensus 119 ~~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 119 EAFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHH
Confidence 8888888888877554 566677777777788888888777777777763211 11233445677777777766
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC
Q 002441 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 296 (921)
+....+.. .+. .+.++...|+..++ +.++.+.+.... ..+..
T Consensus 191 ~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------------~~~l~ 232 (296)
T PRK11189 191 RYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------------NTELA 232 (296)
T ss_pred HHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------------cHHHH
Confidence 55443221 111 34444555555433 233333322222 22223
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 002441 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKD 346 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 346 (921)
|...++|+.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus 233 ~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 233 ERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666664 444444444444333
No 75
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=3.9e-15 Score=184.83 Aligned_cols=359 Identities=10% Similarity=0.023 Sum_probs=280.6
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la 123 (921)
.+...+..+...|.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|++.|+++.+. .|+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3567788889999999999999999998643 45678899999999999999999999988665 3544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
..+...|++++|.+.++.+.+...... ..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISY------VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 677888899999999888887654322 12466677778888888888888887643 345677888888888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCH----------------------------------HHHHHHHHHHHHCCCHHHHHHHH
Q 002441 204 LMQYDTALGCYEKAALE-RPMYA----------------------------------EAYCNMGVIYKNRGDLESAIACY 248 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~-~p~~~----------------------------------~~~~~la~~~~~~g~~~~A~~~~ 248 (921)
.|+.++|+..|+++... .|+.. .....+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888653 23221 12223446788888888888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002441 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
+.. +.+...+.. +...+...|+.++|+++|++..+.... +..++..+-..+...|+.++|..+|+.+.
T Consensus 548 ~~~----~~d~~s~n~-------lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH----EKDVVSWNI-------LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc----CCChhhHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 775 333334443 444555678999999999998875322 34566677778999999999999999998
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002441 328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (921)
Q Consensus 328 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 405 (921)
+.. .-+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...+
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 542 224688999999999999999999999985 35554 67788888888999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 406 NNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
..++.+|...|++++|.+..+...+
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999887754
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=5.8e-16 Score=172.12 Aligned_cols=244 Identities=23% Similarity=0.319 Sum_probs=206.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Q 002441 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 257 (921)
.|....+...++..|..+|+|++|+..++.++++ .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777888999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 258 ~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
....+...+.++.+|+..|...|++++|..++++++++.. .-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1122335577888889999999999999999999987632 23456888999999999999999999999887
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (921)
Q Consensus 330 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 393 (921)
++.-+..+.++|.+|..+|++++|.++|++|+++. +.....+..+|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22347789999999999999999999999999874 22355889999999999999999999999
Q ss_pred HHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++.+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8876 455567899999999999999999999999874
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=1.5e-15 Score=168.77 Aligned_cols=241 Identities=25% Similarity=0.344 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 002441 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 220 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 220 (921)
..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666999999999999999999999998 5555666677999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC---
Q 002441 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--- 296 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 296 (921)
+|....++.+||.+|...|++++|..++++++++... .......++..+..++.++..++++++|+.++++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3445678999999999999999999999999987543 112233456677788888889999999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002441 297 -----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (921)
Q Consensus 297 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (921)
+..+..+.++|.+|..+|++++|.++|++++++. +.....+..+|..|.+.+++.+|.+.|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2345689999999999999999999999999873 233668889999999999999999999999876
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 364 -------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 364 -------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=8.1e-16 Score=147.73 Aligned_cols=205 Identities=21% Similarity=0.192 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 002441 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 271 (921)
.+...||.-|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---------------- 99 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---------------- 99 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----------------
Confidence 3445555555555555555555555555555555555555555555555555555555555444
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 002441 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 349 (921)
|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+
T Consensus 100 -------------------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 100 -------------------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred -------------------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 445555566666666666666666666666653 34446667777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002441 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
++.|..+|+++++++|+++.....++..+++.|++-.|..++++....-+-.++.+.....+-...|+-+.|-.+=.+.-
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777766666666666666677777777777776666666
Q ss_pred hcCCCChh
Q 002441 430 KIDPDSRN 437 (921)
Q Consensus 430 ~l~P~~~~ 437 (921)
...|...+
T Consensus 235 r~fP~s~e 242 (250)
T COG3063 235 RLFPYSEE 242 (250)
T ss_pred HhCCCcHH
Confidence 66776543
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=1.2e-15 Score=158.57 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002441 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 270 (921)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566777777777777777777777777777777777777777777777777777777766666655543
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 002441 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 271 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 348 (921)
..+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 344445555555555555655555555532 334556666777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
++++|...++++++.+|++...+..+|.++...|++++|..+++++++..|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776766777777777777777777777776666
Q ss_pred hhcCC
Q 002441 429 LKIDP 433 (921)
Q Consensus 429 l~l~P 433 (921)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 55443
No 80
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.4e-13 Score=139.14 Aligned_cols=376 Identities=14% Similarity=0.073 Sum_probs=266.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
+...|+..|+--..++++..|..+|++++..+..+...|+..+.+-++......|...+++++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45678888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..+|+..-|.+.|++.++..|+.. + +......-...+..+.|...|++-+-.+|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 2 333334445557788888888888877765 6677778888888888
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHh----------
Q 002441 207 YDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTD---------- 271 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~---------- 271 (921)
...|...|++|++.-.++ .......|..-..+..++.|...|+-+++.-|.+. ..+..+...--.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 888888888887765443 22344455555566777777777777777766652 111111111011
Q ss_pred -------------------------hhhhhhhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHH-HHHHcCCh
Q 002441 272 -------------------------LGTKVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGV-AYGEMLKF 316 (921)
Q Consensus 272 -------------------------lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~-~~~~~g~~ 316 (921)
.-.+....|+.+.-.+.|++++..-|...+ .|.+.+. .-....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111122235556666666666655443221 1122111 11234556
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 317 DMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 317 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ........+-.++++++...++|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666666666665543 5566666666666677777777777777666653 334444455566777888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
+.++..|++..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888777643
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.2e-14 Score=145.71 Aligned_cols=298 Identities=18% Similarity=0.185 Sum_probs=249.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002441 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (921)
+..|.-+.-.++.++|+..|..+++.+|+..++ ...+|+.+...|..+.|+..-+..++ .|+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHH
Confidence 344666677889999999999999999887665 67788999999999999999877765 4443 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh
Q 002441 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 274 (921)
..||.-|+..|-++.|...|....+...--..++..+..+|....++++|++.-++..++.++.. ...++..|..++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999998877666678999999999999999999999999999988753 4577899999999
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 002441 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 353 (921)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A 353 (921)
.+....+.++|...++++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..+|...|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 77889999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 002441 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQC 428 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 428 (921)
+..+.++.+..+. ..+...++..-....-.+.|..++.+-+...|+--..+..+..-... .|...+.+..++..
T Consensus 269 ~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 269 LNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 9999999998776 45566677777777788999999999999999844333333222221 23345555555444
No 82
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.72 E-value=2.1e-15 Score=167.77 Aligned_cols=270 Identities=17% Similarity=0.097 Sum_probs=168.8
Q ss_pred HHHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEE--eec-cCCCCCCCCCc----------c--EEEecCCCCC
Q 002441 555 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV--TWI-GYPNTTGLPTI----------D--YRITDSLADP 619 (921)
Q Consensus 555 ~~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~--~~~-G~p~ttG~~~~----------D--y~i~d~~~~p 619 (921)
-..++..|++.++||+-=-.. ..+..+.++.+.|.+-+ +.. |++...+-..+ | +..+| ++.-
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~--~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~ 345 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQD--GACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSN 345 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCc--ccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhc
Confidence 367999999999999942211 12345566666655544 332 23322221100 1 12222 2211
Q ss_pred C-Cccc-------CcccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHh
Q 002441 620 P-ETKQ-------KHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNN--LAKITPKVLQVWARILC 684 (921)
Q Consensus 620 ~-~~~~-------~~~e~~~~lp~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~ 684 (921)
. .... .-.+++..+|+..-. |.|....+ ..+. ...++++.+++|++.+ ..|.....++++.++++
T Consensus 346 s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk 425 (578)
T PRK15490 346 NHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ 425 (578)
T ss_pred cHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh
Confidence 1 1111 124677788864311 22221111 0000 1223445567888776 48999999999999999
Q ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCC
Q 002441 685 AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV 763 (921)
Q Consensus 685 ~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~Gv 763 (921)
..|+.+|+|+|.+ ..++.+++.++++|+. ++|.|+|... +....|..+||++-|+-+ +.|.+.+|||++|+
T Consensus 426 ~~pdirLvIVGdG----~~~eeLk~la~elgL~-d~V~FlG~~~---Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl 497 (578)
T PRK15490 426 HHPATRFVLVGDG----DLRAEAQKRAEQLGIL-ERILFVGASR---DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV 497 (578)
T ss_pred HCCCeEEEEEeCc----hhHHHHHHHHHHcCCC-CcEEECCChh---hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC
Confidence 9999999999876 5677888999999997 8999999854 455566779999998877 55999999999999
Q ss_pred cEEecCCCcccccchhH-HHhhcCCcccccC--CHHH---HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002441 764 PCVTMAGSVHAHNVGVS-LLTKVGLKHLIAK--NEDE---YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 764 Pvvt~~g~~~~~r~~~~-~l~~~gl~~~ia~--~~~~---y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 837 (921)
|||+ +++|+. =+-.-|...+++. |.++ -+..+.++..+...+..+++..|+.+. ..|+.+.++..
T Consensus 498 PVVA-------TdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e~FS~e~Mv~~ 568 (578)
T PRK15490 498 PVIS-------TPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--ERFTVEHMVGT 568 (578)
T ss_pred CEEE-------eCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCHHHHHHH
Confidence 9997 666511 0111234444433 2223 333345555555555567777777764 44999999999
Q ss_pred HHHHHHH
Q 002441 838 LESTYRN 844 (921)
Q Consensus 838 ~e~~~~~ 844 (921)
++++|..
T Consensus 569 y~ki~~~ 575 (578)
T PRK15490 569 FVKTIAS 575 (578)
T ss_pred HHHHHHh
Confidence 9999853
No 83
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=2e-15 Score=161.34 Aligned_cols=210 Identities=12% Similarity=0.060 Sum_probs=166.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhc
Q 002441 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 279 (921)
+...+++++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----- 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----- 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence 334566777777777888888877777777777777777 56778888888888888777777777666655542
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 002441 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK 352 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~ 352 (921)
...++++.+++++++.+|++..+|...+.++...|++++|+++++++++.+|.+..+|+..+.++... |.+ ++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 12356788888888888888888888888888888888888888888888888888888888887765 222 57
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
++++..+++.++|++..+|..++.++.. +++..+|++.+.+++...|++..++..|+.+|...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888889999999999999999998887 45667788999998888899999999999998763
No 84
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.1e-14 Score=155.80 Aligned_cols=212 Identities=11% Similarity=0.018 Sum_probs=145.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..++.++|+..+.++++++|++..++ ...+.++...+ ++++++..++++++.+|++..+|...+.++...|+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW-------~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVW-------HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHH-------HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 34555666666666666666665543 33333333334 45667777777777777777777777777766665
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 207 Y--DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 207 ~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
. ++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..++...+.++..++.........++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 3 56777777777777777777777777777777777777777777777777777777776666554321111123456
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 285 GVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
++++..+++..+|++..+|..++.++.. .++..+|+..+.+++...|++..++..++.+|..
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7888888888888888888888888877 3455667778888777777777777777777765
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2e-12 Score=135.56 Aligned_cols=386 Identities=15% Similarity=0.069 Sum_probs=286.1
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
..+...|+..|.+-++++....|..++++++..-|.--..|+.....-..+|+...|.+.|++.++..|+. .+|.....
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~ 182 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIK 182 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHH
Confidence 34667899999999999999999999999999999988999999999999999999999999999998853 45665666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCC--------------------------------
Q 002441 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-------------------------------- 172 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-------------------------------- 172 (921)
.-.+.++.+.|...|++.+-..|+-.. +...+..-...|+
T Consensus 183 fElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 666666667777777766666665221 3333333334444
Q ss_pred -----hHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC---HHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 173 -----TQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQ---YDTAL-----GCYEKAALERPMYAEAYCNMGVIYKN 237 (921)
Q Consensus 173 -----~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~ 237 (921)
++.|...|+-++..-|.+ ...+..+-..--+-|+ .++++ -.|++.+..+|.+.++|+..-.+...
T Consensus 255 e~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 444444444444444443 2222222222222233 12222 13455566788888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhh---hhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Q 002441 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWH----YADAMYNLGVAY 310 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~---~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~ 310 (921)
.|+.+.-.+.|++|+...|.........-.+|.-+..++ ....+.+.+.+.|+.++++-|. .+.+|...|...
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 999999999999999988764433222222222222211 2357899999999999999886 367899999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (921)
..+.+...|.+.+-.++-..|.+ ........+-.+.++++...++|++-++..|.+..+|...|.+-..+|+.+.|...
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999984 45555666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002441 391 IEKAIAANPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 391 l~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
|+-|++...-+.. .|-.....-...|.++.|...|++.|+..+... ++..
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 9999987543322 333444555678999999999999999988765 4443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.6e-13 Score=153.00 Aligned_cols=213 Identities=16% Similarity=0.043 Sum_probs=144.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHH
Q 002441 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (921)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (921)
+|+.+.++..+|..+...|+.++|...+.++.+..|.+ .......+.++...|++++|...++++++..|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67888888888888888888888888888877776644 445666777888888888888888888888887764422
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (921)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (921)
. +..+..++ ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11122221 1234444444444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 002441 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (921)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 297 (921)
+...|++++|+.++++++...|..... ....+..++.++...|++++|+..+++++...+
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 888888888888888888776642211 112333444555555666666666666544333
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=2.2e-13 Score=151.90 Aligned_cols=309 Identities=15% Similarity=0.072 Sum_probs=230.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002441 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 112 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
+|+.+.++..+|.++...|+.+++...+.++.+..+.+... .......+..+...|++++|.+.++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE----RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 79999999999999999999999999999999988876543 22345567888899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 002441 192 PAYYNLGVVYSELMQYD----TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 267 (921)
.++.. +..+...|++. .+.+.+......+|.....+..+|.++...|++++|+..++++++..|++...+..
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~--- 153 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA--- 153 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH---
Confidence 87775 55555555444 44444444335667778888899999999999999999999999999998655444
Q ss_pred HHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---
Q 002441 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (921)
Q Consensus 268 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~--- 338 (921)
++.++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 154 ----la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 154 ----VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred ----HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 45555557899999999999999876433 35668999999999999999999999876652 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHH
Q 002441 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (921)
Q Consensus 339 ~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~~ 404 (921)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222333334433333332 1 111111121 2223346788888999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
....+.++...|++++|++.+..++.+-
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999998764
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.5e-13 Score=134.71 Aligned_cols=364 Identities=14% Similarity=0.049 Sum_probs=198.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002441 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (921)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 134 (921)
.-++.+.+|..|+.+++-.+..+.+.. ....-+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 445677889999998887765544333 4566788899999999999999988887766677888889999999999998
Q ss_pred HHHHHHHHHhcCCCChHhHHHHHH-----------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002441 135 AAESYHKALSADPSYKPAAECLAI-----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~-----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
|...-.++ |+++-....+-. -...++.+.+..-.|.+|++.|.+++..+|+..
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88776654 222221111000 012234444444556666666666666666665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCh------------
Q 002441 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF------------ 258 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~------------ 258 (921)
..-.+++.||+++.-|+-+.+.+.-.++..|++.-+...++...+++=+-..|..-.+...+. +.++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 556666666666666666666666666666666555555555444432211121111111110 0000
Q ss_pred ------------HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002441 259 ------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (921)
Q Consensus 259 ------------~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (921)
+.....+-.+-.++.-.|..+++.++|+.+.+. ++|..+.-+...|.+....|+--...+.++.+
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 000111112222333334445555555555442 35555555555555555555533333333222
Q ss_pred Hh---hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 327 FH---FN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 327 l~---~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 397 (921)
-+ +- -+.......++.+++-..++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 21 11 1112233445555555556666666665555555555556666666666666666666666554333
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 398 N-PTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (921)
Q Consensus 398 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (921)
. .+.......||.||...|+.+.|.+.|-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 1222334456666666666666665543
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.4e-12 Score=130.18 Aligned_cols=356 Identities=15% Similarity=0.111 Sum_probs=257.1
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc
Q 002441 92 LQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (921)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~ 170 (921)
+....+|..|+..++-.+..+.+. ......+|.|++..|+|++|...|+-+.+.+.-+.+. ..+++-+++..
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el-------~vnLAcc~FyL 104 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL-------GVNLACCKFYL 104 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc-------chhHHHHHHHH
Confidence 345678888998888777665443 3567788999999999999999999988755444444 55566666666
Q ss_pred CChHHHHHHHHHHHh--------------hC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002441 171 GNTQDGIQKYYEALK--------------ID------------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (921)
Q Consensus 171 g~~~~A~~~~~~al~--------------~~------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 224 (921)
|.|.+|...-.++-+ ++ .+..+-...|+.+.+..-.|++|++.|++++..+|+.
T Consensus 105 g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 788888776654421 11 1123445677888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh-----------hcCCHHHHHHHHHH--
Q 002441 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-----------LEGDINQGVAYYKK-- 291 (921)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~-----------~~~~~~~A~~~~~~-- 291 (921)
...-..++.+|+++.-++-+.+.+.--+...|+...+.+.++..++++-.-.. ....+..+..+++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 99999999999999999999999999999999998888777766655431100 00112222222221
Q ss_pred --------HHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 292 --------ALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 292 --------al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+++.-| ..+++..++...|..+++..+|+.+.+ +++|..+.-+...|.+....|+--...+.++-
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 222222 235788899999999999999988776 46899999999999999888865544444443
Q ss_pred HH---hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 360 AL---SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al---~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
|- ++- -+.......+|.+++...++++.+.+++..-...-++....+++|+++...|++.+|.+.|-+.-.
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 33 221 122334567788888889999999999988888888889999999999999999999999987754
Q ss_pred cCCCChhhHhhHHHHhhhccCCChHHHH
Q 002441 431 IDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (921)
Q Consensus 431 l~P~~~~a~~~~l~a~~~~~~~~~~~~~ 458 (921)
.+-.+.-. ...+++..|+..+.++-.|
T Consensus 422 ~~ikn~~~-Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 422 PEIKNKIL-YKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCCchHHH
Confidence 33223222 2334566666665554443
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.61 E-value=1.2e-13 Score=144.24 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=158.0
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-
Q 002441 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (921)
Q Consensus 42 ~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (921)
+......+.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45567889999999999999999999999999999999876 68899999999999999999999999999998776
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002441 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (921)
Q Consensus 118 --a~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (921)
+++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653222 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002441 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
.......+|.+|...|++.+|+..++++++..|+ ...+++.+|.++..+|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0123457888899999999999999999988765 457899999999999999999998888776655
No 91
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=4.7e-14 Score=144.96 Aligned_cols=293 Identities=22% Similarity=0.277 Sum_probs=198.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHH
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 196 (921)
|.-+++.|++...+.+|+.+++...++.. .+..+|..+|+.|+..++|++|+++-..-+.+ .-..+.+--+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 56677888888888888888888766543 36677888888888889999888875443322 2223555678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHH
Q 002441 197 LGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYER 250 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 250 (921)
||.++.-+|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 89999999999999988887765432 235788999999988765 2344444544
Q ss_pred HHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 002441 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYE 324 (921)
Q Consensus 251 al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~ 324 (921)
-+++..... .....+.++-.+|+.|...|++++|+..-+.-+.+..+. -.++.++|.++.-+|+++.|+++|+
T Consensus 181 NL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 181 NLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 444433322 233456777888888888888888888777766554332 2467778888888888888888887
Q ss_pred HHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 325 LAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 325 ~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
+.+.+. ...+...+.+|..|.-..++++|+.++++-+.+.. ....+++.||..+...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 766541 12255667777777777777778777777666532 224467777777777777777777777
Q ss_pred HHHHhC-----CC-CHHHHHHHHHHHHHcCCHH
Q 002441 393 KAIAAN-----PT-YAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 393 ~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 419 (921)
+.++.. +. ...+..++...-..+|..+
T Consensus 340 ~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 340 LHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 666542 11 2344555555555555543
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.7e-12 Score=134.82 Aligned_cols=332 Identities=14% Similarity=0.062 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 002441 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 163 (921)
.++.--..+...|+|++|.+...+++...|++..+....-.++.+.++|++|+...++-....-.+ ...+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--------~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--------SFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--------hhhHHH
Confidence 344444456678999999999999999999999999999999999999999996555433211111 112677
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 002441 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (921)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 221 (921)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888999999999999998 4566667788899999999999999999999885422
Q ss_pred --------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 222 --------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
| ++.+.+++.+.++...|+|.+|++.+++++++ +.+..+....+..+...++.++..+|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 14567899999999999999999999999543 223345666777888888999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCChH-HHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHcCC
Q 002441 285 GVAYYKKALYYNWHYADAM----YNLGVAYGEMLKFD-MAIVFYELAFHFN----------PHCAEACNNLGVIYKDRDN 349 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~----~~la~~~~~~g~~~-~A~~~~~~al~~~----------p~~~~~~~~la~~~~~~g~ 349 (921)
|..+|...++.++.+.... +++-.+-....-++ .++..++...... ..-..++.+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999988765332 22221111111111 1111111111000 1113455666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYE 426 (921)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 426 (921)
-+.+.+.....-...|....-.........+...+.+|.+++...-+.+|.. ..+.+.++++...+|+++.|++.+.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666655554444444433222233333333336788888888888888877 5677788888888888888888888
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=1.8e-11 Score=138.35 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
.+.++..+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677888899999999999999988888788888888899999999999999999999999999999888888887763
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCChHh--------------------------------------------------
Q 002441 128 DEG-----RLVEAAESYHKALSADPSYKPA-------------------------------------------------- 152 (921)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 152 (921)
... +.+.-...|++.....|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 322 4555566666665555442111
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 153 --------------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 153 --------------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...+..+++.++..|...|++++|+++++++|+..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 001112334445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
+.+|.+.++.+..++..+-.+....+..+++.|+.++|.+.+......+.+.. .......+.....|..+...|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55555555555555555555555555555555555555555554433331111 1112223444567788888899999
Q ss_pred HHHHHHHHHHhC
Q 002441 285 GVAYYKKALYYN 296 (921)
Q Consensus 285 A~~~~~~al~~~ 296 (921)
|+..|....+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=6e-11 Score=123.39 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=208.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 200 (921)
-|..-+..|+|.+|++...+.-+..+...- .+..-+......|+++.|-.++.++-+..++ ........+.+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l-------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVL-------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHH-------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 344455667777777777776555444322 2344455556667777777777777776333 34556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhhhhhhhhc
Q 002441 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~~~~~~ 279 (921)
....|++..|.....++++..|.++.++.....+|...|++.+...++.+.-+..--... .....-.++..+-+-....
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777777777777777777777777777777777777666554322111 1111111111111111111
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+..+.-..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++ ...-++...=++..++
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEK 319 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHH
Confidence 2222223344444444455678888899999999999999999999998755432 222222 2356888999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.++..|+++..+..||..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887 788999999999999999999999999854
No 95
>PLN02949 transferase, transferring glycosyl groups
Probab=99.54 E-value=7.6e-13 Score=149.97 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=140.1
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhH----cCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 660 ITFGSFNN--LAKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 660 ~~f~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
.+|.++++ ..|..+..+++|++++++ .|+.+|+|+|++.. +....+.|++.++++|+. ++|.|.|.++ .+
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~-~~ 346 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVS-YR 346 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCC-HH
Confidence 34666675 489999999999998764 47899999987532 234457888999999997 8999999986 57
Q ss_pred HHHHhcccccEEecCCC-CCCcccHHHHhhcCCcEEecCCCcccccchhHH---Hhh--cCCcccccCCHHHHHHHHHHH
Q 002441 732 DHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LTK--VGLKHLIAKNEDEYVQLALQL 805 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~---l~~--~gl~~~ia~~~~~y~~~a~~l 805 (921)
+....|+.||++|-|.- .+.|.+.+|||++|+|||+ ++.|+-. ... -|...+++.|.+++.+...++
T Consensus 347 el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa-------~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~l 419 (463)
T PLN02949 347 DLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA-------HNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEV 419 (463)
T ss_pred HHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE-------eCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHH
Confidence 88888999999998874 4889999999999999997 3333211 111 144567778999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 806 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 806 ~~-d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
.+ |++.+.++++..|++.. .|+.+.|+++++++|+.+..
T Consensus 420 l~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 420 LRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHh
Confidence 98 57888899999988752 29999999999999988754
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.54 E-value=3.1e-11 Score=152.00 Aligned_cols=384 Identities=13% Similarity=-0.015 Sum_probs=275.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~ 129 (921)
....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...++.+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344567788899999998876654111 1122445556777788898888777665531 11123445567778888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCh--HhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 002441 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 202 (921)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876543211 0111134445567888899999999999999999854432 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhhhhh
Q 002441 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~~ 275 (921)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999886432110 000112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 002441 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (921)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~ 343 (921)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999999999875322 24466778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 002441 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (921)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~ 413 (921)
+...|+.++|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999877655332222 2256789999999999999999999988621 23567889999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCC
Q 002441 414 DAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P~~ 435 (921)
..|+.++|...+++++++....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999987654
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=3e-12 Score=150.48 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=223.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHH
Q 002441 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
.+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 46888999999999999999999999999999999999999999999999999997777666 555555443
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (921)
.++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 334 55666666666678888899999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002441 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 316 (921)
.. +.++|++++.+++... ...+++.++.+++.+.+..+|++.+.+..+-......-.+
T Consensus 162 e~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 99 9999999999998751 2245888999999999999998877654433322222112
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002441 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
..+ ...+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..++
T Consensus 220 ~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 220 TRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred chh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 222 3455566677888889999999999999999999999999998887 33333 444554444
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh
Q 002441 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
+. .+-..-.++..|+..|++.+..++.+--.
T Consensus 283 ~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 283 MS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred Hh-----------ccccCCccHHHHHHHHHHHeeecCCCEEE
Confidence 32 11111245678888899888888876433
No 98
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-13 Score=140.70 Aligned_cols=270 Identities=24% Similarity=0.302 Sum_probs=211.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 002441 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCN 230 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 230 (921)
..-|.-+++.|+....+..|+.+++...++ ..+|..||..|+.+++|++|+++-..=+.+ .-......-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 334677888999999999999999987765 456888999999999999999986543322 2234556778
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCC--------------------HHHHHHHHH
Q 002441 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (921)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~--------------------~~~A~~~~~ 290 (921)
+|.++.-+|.|++|+.+..+-+.+..+.. .....+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887654432 233446677777777766543 345666666
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 291 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
.-+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666553322 246888999999999999999998877766332 24688899999999999999999999
Q ss_pred HHHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 359 MALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (921)
Q Consensus 359 ~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (921)
+.+.+. . ..+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987653 2 2356788999999999999999999998877632 336789999999999999999999999
Q ss_pred HHhhc
Q 002441 427 QCLKI 431 (921)
Q Consensus 427 ~al~l 431 (921)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88775
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=1.2e-12 Score=136.69 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=146.6
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhH
Q 002441 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (921)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (921)
.++..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 3456788999999999999999999999999999999876 578999999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002441 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 154 ~~la~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
..+++.+|.++... |++++|++.|++++..+|++..++..+..+.... .. ..
T Consensus 107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~ 166 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LA 166 (235)
T ss_pred ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HH
Confidence 22356667776655 7899999999999999999876654333221111 00 11
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHhhhhhhhhc
Q 002441 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~lg~~~~~~ 279 (921)
.....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578999999999999999999999997754 578899999999988765443
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=3e-13 Score=128.29 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002441 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 399 (921)
...++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35566666666653 445677777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHh
Q 002441 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (921)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~ 446 (921)
+++.+++++|.++..+|++++|+..|++++++.|+++....++..+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766654443
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2e-10 Score=119.47 Aligned_cols=297 Identities=14% Similarity=0.010 Sum_probs=194.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL 125 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~ 125 (921)
.+......|..-+..|+|.+|.+...+.-+..+....++..-+.+.-..|+++.|-.++.++-+..++ .......++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45566677888888999999999999988877777788888889999999999999999999998443 45678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHHH--
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGVV-- 200 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-- 200 (921)
....|+++.|..-..++++..|.++.. +.....+|...|++.+...++.+.-+..--+.+ -+-+.+..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 555566777889999999988887665332211 11111111
Q ss_pred HHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002441 201 YSELMQYDTA---LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 201 ~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
+.+.++-+.+ ..+++..-..-.+++.....++.-+..+|+.++|.+..+.+++..-+.. +...+-. .
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l 305 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L 305 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence 1112221112 2233333333334567777778888888888888888888887655432 1111111 1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (921)
.-++...-++..++.++..|+++..+..||.++.+.+.+.+|..+++.+++..|+ ...+..+|.++.+.|+..+|.+.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 1234455555555555555555555555555555555555555555555554443 344445555555555555555555
Q ss_pred HHHH
Q 002441 358 QMAL 361 (921)
Q Consensus 358 ~~al 361 (921)
++++
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5544
No 102
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.50 E-value=1.5e-12 Score=147.41 Aligned_cols=268 Identities=18% Similarity=0.158 Sum_probs=176.6
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcC--CCceEEeeccC---CCCC----------CCCCccEEEecCC--CC
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGY---PNTT----------GLPTIDYRITDSL--AD 618 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r--~APvQ~~~~G~---p~tt----------G~~~~Dy~i~d~~--~~ 618 (921)
..+.+.|...++||+.--+.++...-..+++.| ..|+=.+.-|. +... .+...|.+|+-.. .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 346667778899998644433332222333333 34554444332 1111 1234566654211 11
Q ss_pred CC-CcccCcccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEE
Q 002441 619 PP-ETKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 693 (921)
Q Consensus 619 p~-~~~~~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 693 (921)
-. .....-.+++..+|+..-. |.|.... ..++.++++++.++ .|....+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 00 0011224567788864210 2221110 23455678887765 7889999999999998999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCc
Q 002441 694 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 772 (921)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 772 (921)
+|.+ ...+.+++.+++.|++ ++|.|.|.++ .++....|..+|+++-|+.+ +.|.+.+|||+||+|||+
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~----- 298 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVS----- 298 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEE-----
Confidence 9875 3567788889999998 8999999986 57889999999999988766 668899999999999997
Q ss_pred ccccchh--HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 773 HAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 773 ~~~r~~~--~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
+.+++ -++.. |-.-++..|.+++.+...++.++......++...+++... .|+++..++.+.+.|+.+-.
T Consensus 299 --s~~gg~~e~i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 299 --TRVGGIPEVLPP-DMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKK--MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred --CCCCCchhheeC-CceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHhc
Confidence 33330 01111 1122345688999999999988876665666777766643 49999999999999987643
No 103
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.49 E-value=5.3e-12 Score=141.90 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=135.6
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCC
Q 002441 656 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 729 (921)
Q Consensus 656 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 729 (921)
.++.++++++.++ .|..+.+++++.+++++.| +.+|+++|.+ ..++.+.+.+++.|+. ++|.|.|..
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~-- 263 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGLA-HLVWLPGER-- 263 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCCc-ceEEEcCCc--
Confidence 4556677777755 7889999999999998877 6799998865 3557788888999997 889998864
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCcccc--cCCHHHHHHHHHHH
Q 002441 730 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLI--AKNEDEYVQLALQL 805 (921)
Q Consensus 730 ~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~i--a~~~~~y~~~a~~l 805 (921)
.+....|..+|+++-|+-+ +.|.+.+|||+||+|||+ +++++ .=+-.-|...++ ..|.+++.+....+
T Consensus 264 -~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 264 -DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVGGNPELVQHGVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred -CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 4566777779999988755 669999999999999997 55541 001111233333 35899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
.+|++.+..++.+.|+.+.. .|+++.+++.+++.|+.+
T Consensus 336 ~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 336 VSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 99999999999988887654 499999999999999864
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.48 E-value=7.4e-13 Score=125.57 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002441 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+++.+++++|.++..+|++++|+..|+++++..|+++..+.+++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=9.3e-11 Score=132.69 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=214.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 002441 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (921)
+.+++.....++...|++++|++.+++..+.-.+....+...|.++..+|++++|...|...++.+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46788889999999999999999999988888899999999999999999999999999999999999988755544433
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
.... -....+.+.-...|++.....|...... .+...+..-..|.. +..++...+.. .-+....++-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 2111 0112356777888888888787643332 22222222223433 33344444433 34556666666665444
Q ss_pred CHHHHHHHHHHHHHh---CCC----h---HHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (921)
Q Consensus 240 ~~~~A~~~~~~al~~---~p~----~---~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 309 (921)
+..-....+...... ... . ......+.++++-++..+...|++++|+++.+++++..|..++.|...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332221 100 0 011122344566667777777888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHH
Q 002441 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---------SQSLNNLGVVYTV 380 (921)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~ 380 (921)
+...|++.+|...++.+-.++..+-.+....+..+.+.|+.++|.+.+..-.+.+.+. .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888877765544211 1123456778888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 002441 381 QGKMDAAAEMIEKAIAA 397 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~ 397 (921)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888888888877765
No 106
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.47 E-value=2.1e-12 Score=148.96 Aligned_cols=343 Identities=13% Similarity=0.081 Sum_probs=198.7
Q ss_pred CCCceeeccCC-Ccccchh--hhhhhcccccccCCceEEEEEecccCCChhhHHHHH-HHhhh-CCeeEEc---cCCCHH
Q 002441 485 ERPLVIGYVSP-DYFTHSV--SYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMKK-GGIWRDI---YGIDEK 556 (921)
Q Consensus 485 ~r~lriGyvS~-d~~~H~v--~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~-~~~~~-~~~~~~~---~~~~~~ 556 (921)
.+++||..+.. .+..|.. ...+..+.+.+.....||++.+...........++- .+... ...+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 67889997743 2233332 234455666666677899888765332110000000 00000 0000000 0111 2
Q ss_pred HHHHHHHhCCccEEEecCC-CCCCCchhhhhcCCCceEEeeccCCCCC----CC---------------CCccEEEecCC
Q 002441 557 KVAAMVREDKIDILVELTG-HTANNKLGMMACQPAPVQVTWIGYPNTT----GL---------------PTIDYRITDSL 616 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g-~t~~~r~~~~a~r~APvQ~~~~G~p~tt----G~---------------~~~Dy~i~d~~ 616 (921)
.+.+.|+..++||+.--+. .+....+.+....-.|+-+++-++.... +. ...|.+|+-..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~ 214 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP 214 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 6788899999999863221 1111111111233457776665542111 00 12355554211
Q ss_pred CCCCCcccCc---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC
Q 002441 617 ADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN 688 (921)
Q Consensus 617 ~~p~~~~~~~---~e~~~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~ 688 (921)
..-......+ .+++..+|+..- .|.|.......+. ......+.++++.+.++ .|.. +.+.++++..|+
T Consensus 215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~----~~li~a~~~~~~ 290 (465)
T PLN02871 215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL----DFLKRVMERLPG 290 (465)
T ss_pred HHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH----HHHHHHHHhCCC
Confidence 1000111222 456666675321 1222211110000 01112344567777766 5554 445566777899
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEe
Q 002441 689 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 767 (921)
Q Consensus 689 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt 767 (921)
.+|+|+|.+ +.++.+++.++. .+|.|+|.++ .++....|..+||++-|..+ +.|.+.+|||++|+|||+
T Consensus 291 ~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 291 ARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred cEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEE
Confidence 999999875 455566655442 4799999987 57889999999999988866 668899999999999997
Q ss_pred cCCCcccccchhH--HHhh--cCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-
Q 002441 768 MAGSVHAHNVGVS--LLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES- 840 (921)
Q Consensus 768 ~~g~~~~~r~~~~--~l~~--~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~- 840 (921)
+++++. ++.. .|-..++. .|.+++.+....|.+|++.+..+++..++... -|+++..++.+++
T Consensus 361 -------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~~ 430 (465)
T PLN02871 361 -------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRNE 430 (465)
T ss_pred -------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHH
Confidence 444421 2221 14444543 58999999999999999999999999988753 3999999999997
Q ss_pred HHHHHHHHHhcC
Q 002441 841 TYRNMWHRYCKG 852 (921)
Q Consensus 841 ~~~~~~~~~~~~ 852 (921)
.|++++.+|.+.
T Consensus 431 ~Y~~~~~~~~~~ 442 (465)
T PLN02871 431 QYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHH
Confidence 799988887653
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.47 E-value=1.2e-12 Score=147.50 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=141.2
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++++.++ .|..+.+++++..+.++.|+.+|+++|.+ +.++.+++.++++|++ ++|.|.|.++ ..+...
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l~-~~V~~~G~~~-~~el~~ 294 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQLE-DVVEMPGFKP-SHEVKA 294 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEeCCCC-HHHHHH
Confidence 44567777765 79999999999999988999999999876 5678899999999997 8999999987 678889
Q ss_pred hcccccEEecCCC-------CCCcccHHHHhhcCCcEEecCCCcccccchhH-HHhhcCCccccc--CCHHHHHHHHHHH
Q 002441 736 AYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYVQLALQL 805 (921)
Q Consensus 736 ~~~~~D~~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia--~~~~~y~~~a~~l 805 (921)
.|..||+++-|+- .+.+++.+|||++|+|||+ +++++. =+-.-|-..++. .|.+++.+...+|
T Consensus 295 ~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l 367 (406)
T PRK15427 295 MLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHSGIPELVEADKSGWLVPENDAQALAQRLAAF 367 (406)
T ss_pred HHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 9999999998874 4667899999999999998 555510 011113333443 5899999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 806 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 806 ~~-d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.+ |++.+.++++..|+.+.+. |+++..++.+++.|++
T Consensus 368 ~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 368 SQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 99 9999999999999987655 9999999999999875
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=2.5e-10 Score=143.83 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------CHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a 118 (921)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 3445567777788888887777665411 11234455677888889999999999999988765321 1344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 002441 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 192 (921)
...++.++...|++++|...+++++...+.... ...+.+...+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223445677889999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 002441 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (921)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (921)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 6678899999999999999999999875221 23346678999999999999999999998865432111 1
Q ss_pred HHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC---HHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---
Q 002441 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (921)
Q Consensus 265 la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 334 (921)
...++..++.++...|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997653321 1111 1122445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 335 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999988632 23457888999999999999999999999998654
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=9.6e-11 Score=116.23 Aligned_cols=361 Identities=16% Similarity=0.130 Sum_probs=233.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 136 (921)
.+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 44788899999999999999999999999999999999999999999999999999999998889999999999999998
Q ss_pred HHHHHHHhc----------------CCCCh-HhH--------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002441 137 ESYHKALSA----------------DPSYK-PAA--------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (921)
Q Consensus 137 ~~~~~al~~----------------~p~~~-~~~--------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (921)
......... ..++. ... ..-+....+.|-+.++.|+++.|++.|+.+++...-++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 776554321 11100 000 01122355667777788888888888888888877777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHCCCHH
Q 002441 192 PAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY-------------------------AEAYCNMGVIYKNRGDLE 242 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~~~ 242 (921)
..-++++.++++.++++.|+++...+++. +|.. .++....+.++++.++++
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 78888888888888888888877776552 2321 245566677778888888
Q ss_pred HHHHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002441 243 SAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 243 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
.|.+.+...--.... ++....+++.. + ..+++.+...-++-.+.++|--.+...++-.+|.+..-|+.|.
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~--n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALM--N------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHh--c------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHH
Confidence 777665432211111 22223333221 1 1356666777777777778877777777777888777777776
Q ss_pred HHHHHHHhhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH--c---CCHHHHH
Q 002441 321 VFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDAAA 388 (921)
Q Consensus 321 ~~~~~al~~~p~~-----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~---g~~~~A~ 388 (921)
..+.+ +++. ....+.+-..+. ..-..++|.+-+.+.-+. ..+-+..++ .+... . ....+|+
T Consensus 331 DvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 331 DVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 65533 2322 122223322222 233455555544433221 111111111 11111 1 1123455
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 389 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
+.|++++++. ..+....+.+|+...++..+.+.|++..+...++
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 5555555542 3466777888888888888888888887766554
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=4e-12 Score=127.24 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002441 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 353 (921)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566677777644432221 1110 111367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 002441 431 IDPDSRN 437 (921)
Q Consensus 431 l~P~~~~ 437 (921)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9987653
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.5e-09 Score=116.69 Aligned_cols=378 Identities=14% Similarity=0.161 Sum_probs=222.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
-+..|+.....+..+|+...-...|++++..-|- +..+|-..-......+-.+-++..|++.++..|...+- ...
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie 177 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIE 177 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHH
Confidence 4678888999999999999999999999987763 44566666666677788889999999999999876443 345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-------CChHh-------------------------------HHHHHHHHHHHHHH
Q 002441 125 LYKDEGRLVEAAESYHKALSADP-------SYKPA-------------------------------AECLAIVLTDLGTS 166 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p-------~~~~~-------------------------------~~~la~~~~~lg~~ 166 (921)
.+...++.++|.+.|...+..+. .+... ...++.++..|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 56778888888888877654321 11111 11234467789999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC---CHHHH-----HHH-----------------------------------------
Q 002441 167 LKLAGNTQDGIQKYYEALKIDPH---YAPAY-----YNL----------------------------------------- 197 (921)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~-----~~l----------------------------------------- 197 (921)
|...|.+++|...|++++..--. ...++ +.-
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999998765111 10000 000
Q ss_pred ----------------HHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002441 198 ----------------GVVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 198 ----------------a~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
-.+-...|+..+-+..|..+++ .+|. ....|..+|..|...|+.+.|...|+++.+..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 0111112334444444444433 2222 13455566666666666666666666665543
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCChH
Q 002441 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------------------YADAMYNLGVAYGEMLKFD 317 (921)
Q Consensus 256 p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~ 317 (921)
-.. ...++.++...+.......+++.|+.+.+++...-.. +..+|..++......|-++
T Consensus 418 y~~---v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 418 YKT---VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred ccc---hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 322 2234455555555555556666666666655432110 1234555555555666666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHH
Q 002441 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVYT---VQGKMDAAAEMIE 392 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~---~~g~~~~A~~~l~ 392 (921)
.....|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+. |.-.++|...-..+. .-...+.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 66666666666655556666666666666666666666666666553 333344433222222 2235566666666
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 393 KAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 393 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++++..|.. ..++...+.+-.+-|-...|+..|++|-.
T Consensus 575 qaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 575 QALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666655522 12344455555555666666666666543
No 112
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.43 E-value=3.3e-12 Score=142.29 Aligned_cols=340 Identities=16% Similarity=0.098 Sum_probs=214.6
Q ss_pred eeeccCCCcccc--hhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhh-----hCCeeEEccCCCHHHHHHH
Q 002441 489 VIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAM 561 (921)
Q Consensus 489 riGyvS~d~~~H--~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~ 561 (921)
||.+++..+..+ .+...+..+.+.+....++|.+++.................. ....+..........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 355666655444 234455556666666778888887654432211110000000 0000000000112456778
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------------------CCCccEEEecCCCCCCCcc
Q 002441 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETK 623 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG------------------~~~~Dy~i~d~~~~p~~~~ 623 (921)
+...++||++-...+...........+-.|+-+.+.+...... +...|++++-....-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999999887777655543344556677666655443321 2345777653222222223
Q ss_pred cCcc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 002441 624 QKHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 697 (921)
Q Consensus 624 ~~~~---e~~~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 697 (921)
..+. .++..+|+..- ....... .............++++.+++ ..|....++++|..+....|+.+|++.|.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~ 239 (374)
T cd03801 161 ELGGVPPEKITVIPNGVD-TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG 239 (374)
T ss_pred hcCCCCCCcEEEecCccc-ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc
Confidence 3333 46777776421 1110000 000112233344456666664 588899999999999999999999999854
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCccccc
Q 002441 698 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN 776 (921)
Q Consensus 698 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r 776 (921)
.....+.+.+.+.++. ++|.|.|.++ ..+....+..+|+++.|..+ +.+++.+|||++|+|||+-....+..
T Consensus 240 ----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~- 312 (374)
T cd03801 240 ----PLREELEALAAELGLG-DRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPE- 312 (374)
T ss_pred ----HHHHHHHHHHHHhCCC-cceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhH-
Confidence 5566777777788886 8999999987 68899999999999999977 66889999999999999865433322
Q ss_pred chhHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 777 VGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 777 ~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
++.. +-..++.. |.++.++....+..|++.+.++++..++...+. |+++.+++.+.+.|+
T Consensus 313 ----~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 313 ----VVED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred ----HhcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 1221 22334433 469999999999999999999999888766544 899999999988763
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.42 E-value=2.7e-11 Score=142.48 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=182.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 002441 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (921)
Q Consensus 186 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (921)
.+|.+..++..|...+...+++++|+..++.+++..|+....++.+|.++.+.++++++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47888999999999999999999999999999999999999999999999999998887766 555554442
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002441 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 345 (921)
.++ .+++++-..+...+.+..+++.+|.+|..+|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55556666666677777899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------H
Q 002441 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (921)
Q Consensus 346 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--------------------~ 405 (921)
.. +.++|++++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 98 999999999999876 566678888888888888888876443 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002441 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
.-+-..|...+++++++..++.+|+++|+|..+...+.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788888999999999999999999988877654
No 114
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.41 E-value=9.4e-12 Score=137.55 Aligned_cols=319 Identities=15% Similarity=0.147 Sum_probs=191.7
Q ss_pred eeeccCCCcc-cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEc----------cCCCHHH
Q 002441 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 557 (921)
Q Consensus 489 riGyvS~d~~-~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 557 (921)
||.++++.+. .--+...+..+.+.....+++|++++....... ....... -.+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPK-----IKVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCc-----cceeecccccccchhccccchHH
Confidence 3566666665 222233444455555556788888876544200 0000000 011111 1122367
Q ss_pred HHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------------CCCccEEEecCCCCCCCcccC
Q 002441 558 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 625 (921)
Q Consensus 558 ~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG------------~~~~Dy~i~d~~~~p~~~~~~ 625 (921)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8888999999999987766 112222222222244333222222211 345677775321111112234
Q ss_pred cccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 002441 626 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 703 (921)
Q Consensus 626 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 703 (921)
+..++..+|+..- ... .... ..++..+|+++.+ ..|..+.++++|.++.+..|+.+|++.|.+ ..
T Consensus 154 ~~~~~~vi~~~~~-~~~--~~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPLP-FPP--EEPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCcC-hhh--cccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 4566777775421 111 0000 1233344555553 488899999999999998999999999865 23
Q ss_pred HHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHH
Q 002441 704 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 782 (921)
Q Consensus 704 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l 782 (921)
...+.+...+.|+. ++|.|.|. .++....|..||+++-|..+ +.|++++|||++|+|||+-..... ...+
T Consensus 221 ~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-----~~~~ 291 (348)
T cd03820 221 REALEALIKELGLE-DRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG-----PSEI 291 (348)
T ss_pred HHHHHHHHHHcCCC-CeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCc-----hHhh
Confidence 45566677888887 89999987 35777888889999999877 668999999999999998431111 1112
Q ss_pred hhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002441 783 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 783 ~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e 839 (921)
..-|-..++. .|.+++++...++.+|++.+..+++..++.. +. |+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-ER--FSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HH--hCHHHHHHHhc
Confidence 2223233443 4669999999999999999999998886543 23 88888777654
No 115
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.40 E-value=1.6e-11 Score=137.25 Aligned_cols=336 Identities=15% Similarity=0.060 Sum_probs=199.8
Q ss_pred eeeccCCCcc-cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEE-ccCCCHHHHHHHHHhCC
Q 002441 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-IYGIDEKKVAAMVREDK 566 (921)
Q Consensus 489 riGyvS~d~~-~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~d~ 566 (921)
+|+++++... .--+..++..+.........+|.++................ ...... ........+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQE----VVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCccc----ceeeeecCCchhHHHHHHHHhhcC
Confidence 4777776543 22244555666666666667777765433211110000000 001111 11223456778899999
Q ss_pred ccEEEecCCCC--CCCchhhhh----cCCCceEEeeccC-CCCCC----------CCCccEEEecC-CCCCCCcccCccc
Q 002441 567 IDILVELTGHT--ANNKLGMMA----CQPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 628 (921)
Q Consensus 567 idiLvdl~g~t--~~~r~~~~a----~r~APvQ~~~~G~-p~ttG----------~~~~Dy~i~d~-~~~p~~~~~~~~e 628 (921)
+||++-...+. .......+. .+..|+-+..-++ +.... +...|.+++.. ...-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 99998654222 111111111 2566776666565 21111 12346665542 0000000122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-H
Q 002441 629 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 705 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~ 705 (921)
++..+|+..-...+. ............+.++++++++ ..|..+.+++++.++.+..|+.+|++.|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAE--PPESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccC--CchhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 888888653211111 0000011122334455666664 4788899999999999999999999998653221111 1
Q ss_pred HHHHHHHHcCCCCCCEEEccC-cCCcHHHHHhcccccEEecCCCCC---CcccHHHHhhcCCcEEecCCCcccccchhH-
Q 002441 706 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVS- 780 (921)
Q Consensus 706 ~~~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~D~~Ld~~~~~---g~~t~~eal~~GvPvvt~~g~~~~~r~~~~- 780 (921)
...+.+++.|+. ++|.|.|. ++ .++....|..+|+++-|+.+. .+.+.+|||++|+|||+ +.+++.
T Consensus 235 ~~~~~i~~~~~~-~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-------~~~~~~~ 305 (366)
T cd03822 235 EAYALAERLGLA-DRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-------TPVGHAE 305 (366)
T ss_pred hhHhHHHhcCCC-CcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe-------cCCCChh
Confidence 111346788987 89999987 65 578899999999999888655 46789999999999998 333321
Q ss_pred HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 781 LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 781 ~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
.+.. +-..++. .|.+++++....+.+|++.+.++++..+.... . |+++.+++.+.++|+
T Consensus 306 ~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 306 EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1111 2233443 57899999999999999999999998888754 2 899999999988873
No 116
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=3.1e-09 Score=116.01 Aligned_cols=359 Identities=13% Similarity=0.142 Sum_probs=252.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYH 140 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ 140 (921)
.|..--.+|++++-.--+.+.+|......+..+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|+
T Consensus 83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3556666777777766667789999999999999999999999999998773 44566666666677888899999999
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------------CCC-------
Q 002441 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------------DPH------- 189 (921)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~------- 189 (921)
+.++..|...+.+ -..+...+++++|.+.|...+.. +|+
T Consensus 163 RYLk~~P~~~eey----------ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 163 RYLKVAPEAREEY----------IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHhcCHHHHHHH----------HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 9999999864431 22334456666666666554432 222
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH-----HH------------------
Q 002441 190 --------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEA-----YC------------------ 229 (921)
Q Consensus 190 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~-----~~------------------ 229 (921)
-...|..||..|.+.|.+++|...|++++..--. ...+ .+
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 1456889999999999999999999998753111 0000 00
Q ss_pred ---------H------------------------------HHHHHHHCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHH
Q 002441 230 ---------N------------------------------MGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIAL 269 (921)
Q Consensus 230 ---------~------------------------------la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~ 269 (921)
. +-.+-...|+..+-+..|.++++ .+|... ....+.++
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHH
Confidence 0 01111122444555555555543 233321 22334556
Q ss_pred HhhhhhhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------------
Q 002441 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------- 332 (921)
Q Consensus 270 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------- 332 (921)
..++..|...|+++.|..+++++.+.+-.. ..+|..-|..-....+++.|..+++++...-..
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 677788888888999999998888765432 467888888888888888998888888765211
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 002441 333 -----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAY 405 (921)
Q Consensus 333 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~ 405 (921)
+..+|..++.+....|-++.-...|++.+.+.--.+....|.|..+.....+++|.+.|++.+.+. |...++|
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 245677788888888888888889999988888888888899998888888999999999988874 4444554
Q ss_pred HHH---HHHHHHcCCHHHHHHHHHHHhhcCC
Q 002441 406 NNL---GVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 406 ~~l---a~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
... ...-..--+.+.|...|++||+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 432 2222233468889999999999888
No 117
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.39 E-value=7.1e-11 Score=132.52 Aligned_cols=335 Identities=11% Similarity=0.024 Sum_probs=200.6
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhh--HHHHHHHhhhCCeeEEccCCCHHH---H----H
Q 002441 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 559 (921)
Q Consensus 489 riGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~----a 559 (921)
||.++++.+..--+...+..+.+..++.+.||.+|...+..+... .++...+ . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 467777777666677777778888888889998887655332211 1111111 1 1111 222221 1 1
Q ss_pred HH----HHhCCccEEEecCCCCCCCchhhhhcC-CCceEEeeccCCCCC----------CCCCccEEEecCCCCCCCccc
Q 002441 560 AM----VREDKIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETKQ 624 (921)
Q Consensus 560 ~~----i~~d~idiLvdl~g~t~~~r~~~~a~r-~APvQ~~~~G~p~tt----------G~~~~Dy~i~d~~~~p~~~~~ 624 (921)
.. +...+.||++-=+.+ ..-+..+..+ ..|+=+++-+...+. .+...|.+++-. +.....
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~--~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~ 149 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQ--PLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPP 149 (372)
T ss_pred HHhccccccCCCCEEEECCCC--chhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCC
Confidence 11 225689999732211 1112222222 455443332211110 012245444321 111222
Q ss_pred CcccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 002441 625 KHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 696 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 696 (921)
.+..+.+.+|+..-...+. ...+ ..+...+++.+..+++.+.++ .|..+.+++++..+.+..|+.+|+++|.
T Consensus 150 ~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~ 229 (372)
T cd03792 150 QVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGS 229 (372)
T ss_pred CCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 2333333666532101000 0000 011123455666678888876 8999999999999999889999999987
Q ss_pred CCCCHH-HHHHHHHHHHHcCCCCCCEEEccCcC-CcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc
Q 002441 697 PFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 773 (921)
Q Consensus 697 ~~~~~~-~~~~~~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~ 773 (921)
+...+. ....+.+..+..|+. ++|.|.+..+ ..++....|+.+|+++-|..+ +.|.+++|||++|+|||+
T Consensus 230 g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~------ 302 (372)
T cd03792 230 GATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA------ 302 (372)
T ss_pred CCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE------
Confidence 643222 222333434456776 7899988763 356777888999999988877 669999999999999998
Q ss_pred cccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 774 AHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 774 ~~r~~~-~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
+++++ .-+-.-|...+++.+.++......++.+|++.++.+++..++.... -|+++..++.+.+.|+.
T Consensus 303 -s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 303 -GPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRE--NFLITRHLKDYLYLISK 371 (372)
T ss_pred -cCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHh
Confidence 33321 1111225556677888888888888999999999999998887643 38999999999999875
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=3.3e-11 Score=120.63 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002441 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 355 (921)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002441 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
.++++++.+|++..+++.+|.++.+.|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887543
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.5e-10 Score=108.68 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=148.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 002441 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (921)
.++....+-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44455666677777888899999999999988888999999999999999999999999999999999988876555433
Q ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 267 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
.++.. +|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 55667888888888888888888888888888888888888888888888888888888888888877
Q ss_pred cC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002441 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (921)
Q Consensus 347 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 378 (921)
+| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 66 667788888888888887766666654443
No 120
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.37 E-value=9.6e-12 Score=139.44 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=126.6
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecC
Q 002441 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~ 746 (921)
...|..+.+++++..+.++.|+.+|+++|.+ ...+.+++.+++.|+. ++|.|.|.++ .++....|..+|+++-|
T Consensus 198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~l~~~~~~ad~~v~p 271 (367)
T cd05844 198 VEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGLG-GRVTFLGAQP-HAEVRELMRRARIFLQP 271 (367)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCCC-CeEEECCCCC-HHHHHHHHHhCCEEEEC
Confidence 5689999999999999999999999999865 4556788888899997 8999999986 57888999999999988
Q ss_pred CC-------CCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002441 747 FP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRM 817 (921)
Q Consensus 747 ~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~ 817 (921)
.- .+.|++.+|||++|+|||+-....+.. ++.. |-..++. .|.+++++...++.+|++.+.+++.
T Consensus 272 s~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~ 345 (367)
T cd05844 272 SVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLADPDLRARMGA 345 (367)
T ss_pred cccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 74 356899999999999999733221111 1111 2222333 5889999999999999999999998
Q ss_pred HHHHHhhcCCCCChHHHHHHHHH
Q 002441 818 SLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 818 ~~~~~~~~~~l~~~~~~~~~~e~ 840 (921)
..++.+.. .|+++.++..+++
T Consensus 346 ~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 346 AGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHH--HCCHHHHHHHHhc
Confidence 88887643 4899999888875
No 121
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=2.1e-11 Score=136.96 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=133.4
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+++++..++++++++ .|..+.++++|.++.++ ++.+|+++|.+. ....+++.+.+.|++ ++|.|.|...
T Consensus 192 ~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~----~~~~~~~~~~~~~~~-~~v~~~g~~~--- 262 (371)
T cd04962 192 GAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGP----ERSPAERLARELGLQ-DDVLFLGKQD--- 262 (371)
T ss_pred CCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCc----CHHHHHHHHHHcCCC-ceEEEecCcc---
Confidence 445566667777764 79999999999998766 568999988662 345677778888997 8999999754
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 808 (921)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+-....+.. ++.. |-..+++ .|.+++.+....+.+|
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~~-~~~G~~~~~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVKH-GETGFLVDVGDVEAMAEYALSLLED 336 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhcC-CCceEEcCCCCHHHHHHHHHHHHhC
Confidence 455667779999999866 66889999999999999833221111 1111 3333444 3889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
++.+..++...++..... |+++.++..+++.|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 337 DELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 999999999998875433 99999999999999753
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=3.1e-11 Score=133.75 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 002441 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (921)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 267 (921)
|........++..+...|-...|+..+++ ...|.....+|...|+..+|.....+-++.+|+ + .
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------R 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------h
Confidence 33455667889999999999999999988 467778889999999999999999988884443 3 3
Q ss_pred HHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 268 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (921)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 4455554444444555555555443 3456677777778889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
++++.|.++|..++.++|++.++|++++..|.+.++..+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HhhcCCCC
Q 002441 428 CLKIDPDS 435 (921)
Q Consensus 428 al~l~P~~ 435 (921)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 98875443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=9.2e-11 Score=116.04 Aligned_cols=176 Identities=23% Similarity=0.224 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002441 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (921)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (921)
+...+-+....+|++... .+++..+.. .|+-+.+..+..++...+|.+...+..+|......|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444444445555555444 333333333 445666666666666666777777777788888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002441 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
+++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 404 AYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
+..+++.+...+|++++|...-.+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccc
Confidence 888888888888888888776554
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.1e-09 Score=105.16 Aligned_cols=164 Identities=22% Similarity=0.238 Sum_probs=80.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHH
Q 002441 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (921)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 167 (921)
...+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+... +...--+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-------~KRKlAil 130 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-------RKRKLAIL 130 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-------HHHHHHHH
Confidence 33444445555555555555544445555555555555555555555555555555555544332 22222333
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHH
Q 002441 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESA 244 (921)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A 244 (921)
..+|+..+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-+| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555555555555555544443 23344
Q ss_pred HHHHHHHHHhCCCh
Q 002441 245 IACYERCLAVSPNF 258 (921)
Q Consensus 245 ~~~~~~al~~~p~~ 258 (921)
.++|.++++++|.+
T Consensus 211 rkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 211 RKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHhChHh
Confidence 44444444444433
No 125
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.35 E-value=2.9e-11 Score=137.43 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=152.1
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--cEEEEecCCCCC
Q 002441 627 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 700 (921)
Q Consensus 627 ~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~ 700 (921)
.+++..+|+..- .|.|.+ ........+++++.++|++++++ .|..+.+++++.++++..|+ .+|+++|++...
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11112223445566677887766 78899999999999999887 888888864322
Q ss_pred H-HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch
Q 002441 701 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 701 ~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
. ...+.+++..++.|+. ++|.|+|.++ .++....|..+|+++-|+-. +.|.+.+|||++|+|||+ ++++
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-------~~~~ 335 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVA-------ARVG 335 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEE-------ecCC
Confidence 2 4567788888999997 8999999876 67888899999999887754 778999999999999998 4443
Q ss_pred h--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002441 779 V--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 779 ~--~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 846 (921)
+ .++. -|-..+++ .|.+++.+...++.+|++.+..+++..++.. .-|+++.++..++++|..+-
T Consensus 336 ~~~e~i~-~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 336 GLPVAVA-DGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA---AGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred CcHhhhc-cCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHh
Confidence 1 1121 13334444 4899999999999999999999999888764 23999999999999998753
No 126
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.34 E-value=6.6e-11 Score=131.83 Aligned_cols=329 Identities=17% Similarity=0.114 Sum_probs=193.4
Q ss_pred eeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEcc--C-----CCHHHHHHHH
Q 002441 490 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--G-----IDEKKVAAMV 562 (921)
Q Consensus 490 iGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~a~~i 562 (921)
|.++.+.+..=-+...+..+.......++++.+++.....+ ....++.. .-....+. . ..-..+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~~----~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEEA----GVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHhc----CCeEEEEecccccccHHHHHHHHHHH
Confidence 44444444332233344456666666777777776543221 11122210 00111111 1 0124577888
Q ss_pred HhCCccEEEecCCCCCCCchhhhhc-CCCceEEeeccCCCCCC--------------CCCccEEEecCCCCCCCcc--cC
Q 002441 563 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK--QK 625 (921)
Q Consensus 563 ~~d~idiLvdl~g~t~~~r~~~~a~-r~APvQ~~~~G~p~ttG--------------~~~~Dy~i~d~~~~p~~~~--~~ 625 (921)
+..++||++-...++.......... +-.|+-.+..+....++ ....|.+++-....-.... ..
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGY 156 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCC
Confidence 8999999987554433221111112 34555555555443321 1223443321100000001 12
Q ss_pred cccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002441 626 HVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 626 ~~e~~~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
-.+++..+|+..-. +.+..... ..+...+++++.++|+.+.+. .|..+.+++++..+....|+.+|++.|.+..
T Consensus 157 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~- 235 (365)
T cd03807 157 PPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD- 235 (365)
T ss_pred ChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc-
Confidence 23566666653211 11111000 011223455666677777754 7889999999999999999999999986532
Q ss_pred HHHHHHHHHHHH-HcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch
Q 002441 701 DSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 701 ~~~~~~~~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
...+..... ..|+. ++|.|.|.. .+....|..+|+++-|..+ +.|++.+|||++|+|||+ ++.+
T Consensus 236 ---~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~-------~~~~ 301 (365)
T cd03807 236 ---RANLELLALKELGLE-DKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA-------TDVG 301 (365)
T ss_pred ---hhHHHHHHHHhcCCC-ceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE-------cCCC
Confidence 223333333 77886 899999864 4566778889999998877 778899999999999998 3333
Q ss_pred h--HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 779 V--SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 779 ~--~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
+ .++.. ..++ ..|.+++.+....+.+|++.+..++...++.... .|+++..++.++++|+
T Consensus 302 ~~~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 302 DNAELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEE--NFSIEAMVEAYEELYR 365 (365)
T ss_pred ChHHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 1 11222 2223 3589999999999999999999999888887654 3899999999999884
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=2.7e-11 Score=114.37 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=104.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888889999999999999999999998888988999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
++..++.+|.+|...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999998876643
No 128
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=2.5e-11 Score=140.07 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=137.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++.+.++ .|..+.+++++..+.+..|+.+|+|+|.+..++...+.+++.+++.|+. ++|.|+|. .+...
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G~----~~v~~ 366 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTGF----QNVKE 366 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcCC----ccHHH
Confidence 44567777765 7888999999999999999999999987644556778888899999997 89999993 34556
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhh-----cCCcccc--cCCHHHHHHHHHHH
Q 002441 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQL 805 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--a~~~~~y~~~a~~l 805 (921)
.|..+||++-|+-. +.+++.+|||++|+|||+ +++|+ .++.. .|-..++ ..|.+++.+...+|
T Consensus 367 ~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa-------td~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 367 YLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA-------TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred HHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE-------CCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 66779999988755 778999999999999998 44432 12222 1333444 35899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
.+|++.+..+++..++++.+ .|+.+.++..+++.|+
T Consensus 440 l~~~~~~~~~~~~a~~~v~~--~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 440 LKDPELRRAMGEAGRKRVER--YYTLERMIDSYRRLYL 475 (475)
T ss_pred hcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 99999999999999988754 4899999999999884
No 129
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.33 E-value=5.2e-11 Score=133.45 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=131.4
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccC
Q 002441 654 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 654 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+++.+..+++.+.+ ..|..+.++++|.++.+..|+.+|+++|.+... +...+.+.+.+.+.| ++|.|+|.
T Consensus 188 ~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~ 264 (380)
T PRK15484 188 NISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGG 264 (380)
T ss_pred CCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCC
Confidence 34444455665565 488999999999999999999999999865321 223445555555554 57999999
Q ss_pred cCCcHHHHHhcccccEEecCCCC--CCcccHHHHhhcCCcEEecCCCcccccchh-HHHhhcCCccc-c--cCCHHHHHH
Q 002441 727 ILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHL-I--AKNEDEYVQ 800 (921)
Q Consensus 727 ~~~~~~~~~~~~~~D~~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~-i--a~~~~~y~~ 800 (921)
++ ..+....|+.+|+++-|+-+ +.|.+.+|||++|+|||+ ++.|+ .=+-.-|...+ + ..|.+++.+
T Consensus 265 ~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~-------s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 265 QP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLA-------STKGGITEFVLEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred CC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEE-------eCCCCcHhhcccCCceEEEeCCCCHHHHHH
Confidence 86 57888899999999988754 557899999999999998 44431 10111133333 3 358899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 801 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 801 ~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
...+|.+|++. .++++..|+...+. |+++.++..+++.|...
T Consensus 337 ~I~~ll~d~~~-~~~~~~ar~~~~~~--fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 337 DINRTLADPEL-TQIAEQAKDFVFSK--YSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHcCHHH-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHh
Confidence 99999999974 67888887766444 99999999999999653
No 130
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.33 E-value=7.2e-11 Score=130.66 Aligned_cols=315 Identities=15% Similarity=0.090 Sum_probs=186.6
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHH-HhhhCCe--eEEccCCCHHHHHHHHHhC
Q 002441 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGI--WRDIYGIDEKKVAAMVRED 565 (921)
Q Consensus 489 riGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~a~~i~~d 565 (921)
||.++++.+...-+...+..+.+.+....++|+++................ ....... ...........+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 466777777544444555666677767788888887654332211100000 0000000 0000111235688899999
Q ss_pred CccEEEecCCCCCCCchhhhhcC-CCceEEeeccCCCCCCC-------------CCccEEEecCCCCCCCcccCc---cc
Q 002441 566 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 628 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~r-~APvQ~~~~G~p~ttG~-------------~~~Dy~i~d~~~~p~~~~~~~---~e 628 (921)
++||++-... ....-+..+..+ -.|+-+..-+....... ...|.+++-.-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999997665 222223333322 13554444443322221 345666643222212222333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCC--CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 002441 629 ELIRLPECFLCYTPSPEAGPVCP--TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 704 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 704 (921)
++..+|+..- ... ..+.... .....++.++|+++++. .|..+.++++|..+....|+.+|++.|.+ ...
T Consensus 160 ~~~vi~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~ 232 (353)
T cd03811 160 KIEVIYNPID-IEE--IRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLR 232 (353)
T ss_pred ccEEecCCcC-hhh--cCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccH
Confidence 7777776421 111 1111110 12345566778877765 68999999999999988899999999865 344
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HH
Q 002441 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SL 781 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~ 781 (921)
..+.+.+.+.|+. ++|.|.|... +....+..+|+++-|..+ +.|++.+|||++|+|||+ +++++ .+
T Consensus 233 ~~~~~~~~~~~~~-~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~-------~~~~~~~e~ 301 (353)
T cd03811 233 EELEALAKELGLA-DRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA-------TDCPGPREI 301 (353)
T ss_pred HHHHHHHHhcCCC-ccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE-------cCCCChHHH
Confidence 5666778888986 8999999854 455677789999999877 668999999999999998 44431 11
Q ss_pred HhhcCCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002441 782 LTKVGLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 782 l~~~gl~~~ia--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
+.. |-..++. .+.+++ ++....+..|++.+.+++...++..
T Consensus 302 i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 302 LED-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred hcC-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 111 2333343 456666 6777888888888887777555443
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=123.36 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.|.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhh
Q 002441 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~ 448 (921)
.+|++++|++.|+++|+++|++.....++-.+-.-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999887776554433
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=1.9e-10 Score=113.84 Aligned_cols=177 Identities=17% Similarity=0.154 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002441 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3666666667889999999 999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002441 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (921)
Q Consensus 146 ~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (921)
.|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-.|+++.|..++..+....+.+.
T Consensus 130 ~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 130 APTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred CCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 9999776 778888889999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Q 002441 226 EAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
.+..+++.+....|++++|.....+
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999999999887654
No 133
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.32 E-value=2.1e-11 Score=138.02 Aligned_cols=169 Identities=17% Similarity=0.111 Sum_probs=125.4
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCC-----cEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCc
Q 002441 657 NGFITFGSFNN--LAKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 657 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
++..+|.++++ ..|.....++++..+.+..|+ .+|+|+|++.. +....+.|++..+++|+. ++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCC
Confidence 34456777774 589999999999999998875 89999986532 224567888888999997 899999987
Q ss_pred CCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH---Hh--hcCCcccccCCHHHHHHH
Q 002441 728 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LT--KVGLKHLIAKNEDEYVQL 801 (921)
Q Consensus 728 ~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~---l~--~~gl~~~ia~~~~~y~~~ 801 (921)
+ .++....|+.+|++|-|... +.|.+.+|||++|+|||+.. .|+.. .. .-|-..+++.|.+++.+.
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~-------~ggp~~~iv~~~~~g~~G~l~~d~~~la~a 385 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHA-------SGGPLLDIVVPWDGGPTGFLASTAEEYAEA 385 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEc-------CCCCchheeeccCCCCceEEeCCHHHHHHH
Confidence 6 68899999999999988754 77999999999999998733 32211 11 024556677899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 002441 802 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 836 (921)
Q Consensus 802 a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~ 836 (921)
..++.+|++.....+.+-+.... ..|+.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH--HhhCHHHhcc
Confidence 99999976544443333333333 3478877653
No 134
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.32 E-value=3.4e-11 Score=136.25 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=136.2
Q ss_pred CcccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 002441 625 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 698 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 698 (921)
.|.+++..+|+..-. |.|.+.... ......+..+..+++.+.+ ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 455788888864311 222211110 1111123344444544443 4899999999999999999999999998531
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-CCCCcccHHHHhhcCCcEEecC
Q 002441 699 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 699 ~--------~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~-~~~g~~t~~eal~~GvPvvt~~ 769 (921)
. .+..++.+.+.+... .+.++|.|+|.++ ..+....|+.+|+++-|. |++.|.+.+|||+||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-- 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGR-LDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-- 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcc-cCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEE--
Confidence 0 111333433333221 1348999999987 678889999999998766 66778899999999999998
Q ss_pred CCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002441 770 GSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 770 g~~~~~r~~~--~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 838 (921)
+++++ .++. -|...+++ .|.+++.+...++.+|++.+.++++..|+.... .|+++.++..+
T Consensus 330 -----s~~~g~~e~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 330 -----SDTAPVREVIT-DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred -----cCCCCchhhcc-cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 44441 1121 13444543 589999999999999999999999999988754 47887766654
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.31 E-value=2.5e-10 Score=134.11 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHH
Q 002441 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (921)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 178 (921)
.+++.-+.......|.++.+++.||.+..+.|++++|...++.+++..|++..+ ...++.++.+.+++++|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHH
Confidence 334444444455678889999999999999999999999999999999998766 5666777777899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002441 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 179 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
.+++++..+|+++.+++.+|.++.+.|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++....-
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999886654
Q ss_pred H
Q 002441 259 E 259 (921)
Q Consensus 259 ~ 259 (921)
.
T Consensus 222 ~ 222 (694)
T PRK15179 222 A 222 (694)
T ss_pred h
Confidence 4
No 136
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.31 E-value=4.9e-11 Score=135.04 Aligned_cols=171 Identities=22% Similarity=0.189 Sum_probs=132.5
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCcEEEEecCCCCC----HHHHHHHHHHHHH-cCCCCCCEEEc
Q 002441 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFCC----DSVRHRFLSTLEQ-LGLESLRVDLL 724 (921)
Q Consensus 655 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~----~~~~~~~~~~~~~-~gi~~~rv~~~ 724 (921)
..++.++|++++++ .|..+.+++++.++.... |+.+|+++|.+... ....+.+.+.+++ .|++ ++|.|+
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE-DQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEEe
Confidence 44566778887765 889999999999999887 89999999865321 1234677888888 8998 999999
Q ss_pred cCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhhcCCcc-cccCCHHHHHH
Q 002441 725 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKH-LIAKNEDEYVQ 800 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~~gl~~-~ia~~~~~y~~ 800 (921)
|.++ ..+....|..+|++|-|..+ +.|.+.+|||++|+|||+ +++++. ++.. |-.. ++..|.+++.+
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-------s~~~~~~e~i~~-~~~g~~~~~~~~~~a~ 356 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-------CNSGGPLETVVD-GETGFLCEPTPEEFAE 356 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-------ECCCCcHHHhcc-CCceEEeCCCHHHHHH
Confidence 9987 56777888999999977655 568999999999999998 344321 2222 2223 44568999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002441 801 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 801 ~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 837 (921)
....+.+|++.+..+++..++.+.+. |+++.+++.
T Consensus 357 ~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 391 (392)
T cd03805 357 AMLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAER 391 (392)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhh
Confidence 99999999999999999988876544 888887765
No 137
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.30 E-value=1.5e-10 Score=129.42 Aligned_cols=174 Identities=17% Similarity=0.136 Sum_probs=134.0
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
..+++.++|++++++ .|..+.+++++.++.+..|+.+|+++|.+. ......+...+.+.|+. ++|.|+|.++ .+
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 273 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGLE-DRVTFTGMLY-GE 273 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCcc-ceEEEcCCCC-hH
Confidence 345566667777754 889999999999999999999999998642 22334444445788987 8999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 810 (921)
+....|..+|+++-|..+ +.|++.+|||+||+|||+-....+.. ++.. +..-++..+.+++++...++.+|++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHH
Confidence 888889999999988865 77899999999999999844332211 2222 3334556677999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002441 811 ALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~l~~~~~~~~~~e 839 (921)
.+..+++..++.+... |+++.+++.++
T Consensus 348 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 374 (375)
T cd03821 348 RLKAMGENGRALVEER--FSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999999988876444 89998888765
No 138
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.30 E-value=1.2e-10 Score=130.07 Aligned_cols=313 Identities=15% Similarity=0.134 Sum_probs=181.4
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccCC--C----HHHHHHHH
Q 002441 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 562 (921)
Q Consensus 489 riGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~a~~i 562 (921)
||.++.+++..=-+..++..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLI 76 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHH
Confidence 35566666622223345555666666778999888765433222222221 11222222111 1 13466677
Q ss_pred HhCCccEEEecCCCCCCCchhhhh-cCCCceEEeec-cCCCCCCCCCcc----------EEEecCCCCCCCc--cc----
Q 002441 563 REDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWI-GYPNTTGLPTID----------YRITDSLADPPET--KQ---- 624 (921)
Q Consensus 563 ~~d~idiLvdl~g~t~~~r~~~~a-~r~APvQ~~~~-G~p~ttG~~~~D----------y~i~d~~~~p~~~--~~---- 624 (921)
+..++||++-...++.. -..+++ ....|+-+.+. +...+......- +..+|.++.+... +.
T Consensus 77 ~~~~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 155 (358)
T cd03812 77 KKNKYDIVHVHGSSASG-FILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK 155 (358)
T ss_pred hcCCCCEEEEeCcchhH-HHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC
Confidence 88999999865444211 112222 23445544322 211111110000 1112332222221 11
Q ss_pred CcccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002441 625 KHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 625 ~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
...+++.-+|+..-. +.+.+.............+.++++.++++ .|..+.+++++..+.+..|+.+++++|.+
T Consensus 156 ~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g--- 232 (358)
T cd03812 156 VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG--- 232 (358)
T ss_pred CCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC---
Confidence 123566666653110 11111110001112345566777777765 88999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh
Q 002441 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779 (921)
Q Consensus 701 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 779 (921)
.....+++.+++.|+. ++|.|.|.. .+....|..||+++-|+-+ +.|.+.+|||++|+|||+ +++++
T Consensus 233 -~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~-------s~~~~ 300 (358)
T cd03812 233 -ELEEEIKKKVKELGLE-DKVIFLGVR---NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCIL-------SDTIT 300 (358)
T ss_pred -chHHHHHHHHHhcCCC-CcEEEeccc---CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEE-------EcCCc
Confidence 3456777778889997 899999973 4556677889999988865 778999999999999998 33331
Q ss_pred H--HHhhcCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002441 780 S--LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 780 ~--~l~~~gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
. ++.. +..-++. .+++++.+...+|.+|++.++.++...+..
T Consensus 301 ~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~ 345 (358)
T cd03812 301 KEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKG 345 (358)
T ss_pred hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhcc
Confidence 1 2222 2333344 356999999999999998887776655544
No 139
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.30 E-value=2.1e-10 Score=127.76 Aligned_cols=327 Identities=17% Similarity=0.123 Sum_probs=194.6
Q ss_pred eeeccCCCcccchhhhhhhcccccccCCceEEEEEecccCCChhh-HHHHHHHhhhCCeeEEccCC-CHHHHHHHHHhCC
Q 002441 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 566 (921)
Q Consensus 489 riGyvS~d~~~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 566 (921)
+|.|++..|-.- ...++......+.+.+++|.+++..+..+... ...........-..+.+..+ ....+.+.++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777766332 33445556666667788888887654332210 00000000000000000011 1234666777889
Q ss_pred ccEEEecCCCCCCCchhhhhcCC--CceEEeeccCCCCCC---------CCCccEEEecCCCCCCCccc---CcccceEE
Q 002441 567 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG---------LPTIDYRITDSLADPPETKQ---KHVEELIR 632 (921)
Q Consensus 567 idiLvdl~g~t~~~r~~~~a~r~--APvQ~~~~G~p~ttG---------~~~~Dy~i~d~~~~p~~~~~---~~~e~~~~ 632 (921)
+||+.--.++.. .....+..+. -|+-++..|+..... +...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 999875443322 2233333333 455555555432211 23467776532211111122 23566777
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 002441 633 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 710 (921)
Q Consensus 633 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 710 (921)
+|+.. .... ..+. . ....++.+.++++.+ ..|..+.+++++.++....|+.+|.+.|.+ .....+.+.
T Consensus 159 i~~~~-d~~~--~~~~--~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLER--FPPR--P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHH--cCCc--c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 1110 0000 0 112233444555543 589999999999998888899999999865 345567777
Q ss_pred HHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-------CCcccHHHHhhcCCcEEecCCCcccccchhHHHh
Q 002441 711 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 783 (921)
Q Consensus 711 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-------~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 783 (921)
+++.++. ++|.|.|.++ .++....|..+|++|-|+.+ +.|++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~~-~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGLE-DRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCCC-CeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 7888886 8899999987 68899999999999999864 66889999999999999843222211 222
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002441 784 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 837 (921)
Q Consensus 784 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 837 (921)
. |-..++. .|.+++++....+.+|++.+..+++..++.+.+. |+++..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 3233333 3899999999999999999999999988877543 777776653
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.4e-10 Score=128.78 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=191.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
-..++..+...|-...|+..|++ ...|.....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 44577888888999999999987 45778889999999999999999999998 6667888888888887776
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 6777766665432 223344555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002441 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 398 (921)
.++|..++..+|++.++|++++..|.+.++..+|...+++|++-+-++..+|.|.-.+..+.|.+++|++.|.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999998873
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=4.3e-11 Score=120.46 Aligned_cols=120 Identities=34% Similarity=0.521 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (921)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (921)
...++.-+..-|.-+.+.++|.+|+..|.++|+++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34577788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhh
Q 002441 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (921)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 272 (921)
.+|..+|++++|++.|+++|+++|++...+.++..+-..+
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986666655544443
No 142
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.27 E-value=9.7e-11 Score=130.80 Aligned_cols=173 Identities=16% Similarity=0.173 Sum_probs=127.6
Q ss_pred CCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 654 ALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 654 ~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+++++.++|..+. ...|..+.+++++.++....|+.+|+++|.+ ...+.+.+.+++.|+. ++|.|.|...
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~--- 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGLS-NRVKLLGLRD--- 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCCC-CcEEEecccc---
Confidence 3445555566666 4589999999999999999999999999865 3456777888888987 8999999753
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHh-cCH
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDV 809 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~-~d~ 809 (921)
+....|..+|+++-|.-+ +.|.+.+|||++|+|||+-....+.. ++...|. -+...|.+++.+....+. .++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCH
Confidence 555667779999988866 55889999999999999832211111 1111111 122478999999999988 566
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 810 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 810 ~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
..+..++.. +.... ..|+++.++..+++.|+
T Consensus 329 ~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 329 EERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 666666665 65554 34899999999999986
No 143
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.27 E-value=9.8e-11 Score=130.80 Aligned_cols=325 Identities=17% Similarity=0.111 Sum_probs=193.5
Q ss_pred chhhhhhhcccccccCCceEEEEEecccCCChhhHHHHH------------HHhhhCCeeEEccCCCHHHHHHHHH--hC
Q 002441 500 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE------------KVMKKGGIWRDIYGIDEKKVAAMVR--ED 565 (921)
Q Consensus 500 H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~i~--~d 565 (921)
.....++..++..+...+++|++++.............. .... ...+..........+...|. ..
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 92 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVP-LLKGPLLYLLAARALLKLLKLKRF 92 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhh-ccccchhHHHHHHHHHHHHhcccC
Confidence 334455666777777778888888765432221110000 0000 00000000011245778888 99
Q ss_pred CccEEEecCCCCCCCchhhhhc-CCCceEEeeccCCCCCC-------------CCCccEEEecCCCCCCCcccC--cccc
Q 002441 566 KIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 629 (921)
Q Consensus 566 ~idiLvdl~g~t~~~r~~~~a~-r~APvQ~~~~G~p~ttG-------------~~~~Dy~i~d~~~~p~~~~~~--~~e~ 629 (921)
++||++-......+-....+.. .-.|+-+...|...... +...|++++..-......... ...+
T Consensus 93 ~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 93 RPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 9999886543333222222221 12466555544332221 233577765422111111222 4566
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 002441 630 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 704 (921)
Q Consensus 630 ~~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 704 (921)
+..+|+.. ++....+... ......++.++++++.+. .|....+++++..+....|+.+|.+.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777542 1111110000 011334456677777754 78889999999999988899999998865 334
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHh
Q 002441 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 783 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 783 (921)
..+.+.++..++. ++|.+.|.++ ..+....+..||+++-|..+ +.+++.+|||++|+|||+-....+.. ++.
T Consensus 246 ~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGLE-DRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCCc-ceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 5666677778886 7999999987 57888999999999998866 77889999999999999833221111 111
Q ss_pred hcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 784 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 784 ~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
. +-..++ ..|.+++++....+.+|+.. .+....+.... .-|++..++..+.++|++
T Consensus 319 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 D-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred C-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 1 222233 45899999999999999876 34444444433 337899999999888865
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.26 E-value=1.3e-10 Score=109.61 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (921)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002441 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (921)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 405 (921)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876543
No 145
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.26 E-value=9.2e-11 Score=131.26 Aligned_cols=172 Identities=18% Similarity=0.209 Sum_probs=131.0
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
+.++.++++++++. .|..+.++++|.++....|+.+|++.|.+ .....+.+...+.++. ++|.|.|.++ ..+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~ 271 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGLA-DRVIFTGFVP-REE 271 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCCC-CcEEEeccCC-hHH
Confidence 34455666666644 68889999999999998899999999865 3556777777888887 8999999987 678
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCH-HHHHHHHHHHhcCHH
Q 002441 733 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNE-DEYVQLALQLASDVT 810 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~-~~y~~~a~~l~~d~~ 810 (921)
....|+.+|+++-|... ++|++.+|||+||+|||+.....+.. ++ .-|-..++..+. +++++....+.+|++
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~-----~i-~~~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPD-----LV-ADGENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhh-----he-ecCceeEEeCCCCHHHHHHHHHHHhChH
Confidence 88999999999999866 77889999999999999844332221 11 112334444433 399999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.++.+++..++..... . +.+.+++.|++
T Consensus 346 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 346 LRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 9999998888876432 1 67888887764
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.5e-10 Score=107.34 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=84.3
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 328 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
.+. ++..+..+.+|..+...|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5566777778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888887765
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.6e-10 Score=122.44 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002441 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 270 (921)
.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+... .+++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l--~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL--TQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH--HHHHHHHH
Confidence 445556677777788888888887654 55777778888888999999999988888877766543 33333333
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002441 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (921)
Q Consensus 271 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (921)
.+. ...+.+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|++++++.+++.+....|+.
T Consensus 175 ~l~---~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLA---TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHH---HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHH---hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 322 11235666666666665555556666666666666666666666666666666666666666666666666655
Q ss_pred -HHHHHHHHHHHhhCCCCH
Q 002441 351 -DKAVECYQMALSIKPNFS 368 (921)
Q Consensus 351 -~~A~~~~~~al~~~p~~~ 368 (921)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 444455555555556544
No 148
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.22 E-value=1.7e-10 Score=128.54 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=118.5
Q ss_pred CeEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH-H
Q 002441 659 FITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD-H 733 (921)
Q Consensus 659 ~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~-~ 733 (921)
.++|+++.++ .|....+++.+..+. ++.+|+++|.+ ..++.+.+..++.|+. ++|.|.|.+....+ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~~~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----SDFEKCKAYSRELGIE-QRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----ccHHHHHHHHHHcCCC-CeEEEecccCCcHHHH
Confidence 4556666664 376777888777653 47899999876 3467788888899997 89999998764434 4
Q ss_pred HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCccccc-chh--HHHhhcCCcccc--cCCHHHHHHHHHHHhc
Q 002441 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN-VGV--SLLTKVGLKHLI--AKNEDEYVQLALQLAS 807 (921)
Q Consensus 734 ~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r-~~~--~~l~~~gl~~~i--a~~~~~y~~~a~~l~~ 807 (921)
...|..+|+++-|..+ +.|.+++|||+||+|||+ ++ +++ .++. -|...++ ..|.+++++....|.+
T Consensus 252 ~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~-------s~~~~g~~eiv~-~~~~G~lv~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 252 QQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS-------SDCMSGPRDIIK-PGLNGELYTPGNIDEFVGKLNKVIS 323 (359)
T ss_pred HHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE-------eCCCCChHHHcc-CCCceEEECCCCHHHHHHHHHHHHh
Confidence 5567889999988877 669999999999999998 33 221 1221 1444444 4689999999999999
Q ss_pred CHHH--HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002441 808 DVTA--LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 808 d~~~--~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 846 (921)
|++. ..+.+..++ -|..+.|+.++-++|..+-
T Consensus 324 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 324 GEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred CcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHh
Confidence 9974 333333222 2456788888888887764
No 149
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.22 E-value=3.1e-10 Score=129.23 Aligned_cols=201 Identities=17% Similarity=0.167 Sum_probs=146.8
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002441 627 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 627 ~e~~~~lp~~~~~--~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
.+++..+|+..-. |.|..... ..+...+++++.++++...++ .|....+++++.++ +..|+.+|+|+|.+
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 3567788874211 22211100 011223456666777777765 78889999998765 55689999999876
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCC-----cccHHHHhhcCCcEEecCCCcccc
Q 002441 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 775 (921)
Q Consensus 701 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g-----~~t~~eal~~GvPvvt~~g~~~~~ 775 (921)
..++.+++.++++|++ +|.|+|.++ .++....|+.+||++-|+-..+ ++...|+|+||+|||+ +
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~-------s 337 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVA-------T 337 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEE-------E
Confidence 4567788888899985 699999986 5788888999999998876543 3347899999999998 3
Q ss_pred cchh----HHHhhcCCcccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002441 776 NVGV----SLLTKVGLKHLI-AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 776 r~~~----~~l~~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 846 (921)
+.++ .+.. +..-++ ..|.+++.+...+|.+|++.+..+++..++..... |+++..++++++.|+.+.
T Consensus 338 ~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 338 AEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERT--LDKENVLRQFIADIRGLV 409 (412)
T ss_pred eCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHh
Confidence 3321 1232 322233 36899999999999999999999999999876544 999999999999998764
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=1.7e-10 Score=122.06 Aligned_cols=257 Identities=18% Similarity=0.106 Sum_probs=190.5
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002441 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (921)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (921)
.++..|+|.+++..++ ....++. ..+....+.+++..+|+++..+.-.... .+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997776 2233332 3556778899999999998776655432 233345666777766665677777
Q ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002441 245 IACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (921)
Q Consensus 245 ~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 322 (921)
+..++..+..... +. .+....+.++...|++++|++.+.+. .+.+.......++..+++++.|.+.
T Consensus 86 l~~l~~~~~~~~~~~~~-------~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-------IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHCCCTS---CHH-------HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhccccccH-------HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 7766655433222 21 12233455666789999999988764 5678888889999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 323 YELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 323 ~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
++.+.+.+.+..-+....+++....| ++.+|...|++..+..+..+..++.++.++..+|++++|.+.++++++.+|+
T Consensus 154 l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 99999888877666666666666655 6999999999988887888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcCCCChhh
Q 002441 401 YAEAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a 438 (921)
+++++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 999999999999999998 66778888888899987644
No 151
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.19 E-value=4.4e-10 Score=127.08 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=134.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEcc-CcCCc
Q 002441 654 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILLN 730 (921)
Q Consensus 654 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~-~~~~~ 730 (921)
+++++.++|+.+.++ .|..+.+++++.++. ++.+|++++++...+...+.+++.+...+...++|+|.+ .++ .
T Consensus 196 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 271 (388)
T TIGR02149 196 GIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP-K 271 (388)
T ss_pred CCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-H
Confidence 455666667777765 688899999988764 567888876654455567778888888888667788764 454 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCH------HHHH
Q 002441 731 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNE------DEYV 799 (921)
Q Consensus 731 ~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia--~~~------~~y~ 799 (921)
.+....|..+||+|-|+.+ +.|.+.+|||++|+|||+ +++++ .++. -|...++. .|. +++.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-------s~~~~~~e~i~-~~~~G~~~~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA-------SATGGIPEVVV-DGETGFLVPPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE-------eCCCCHHHHhh-CCCceEEcCCCCCcccchHHHHH
Confidence 7888899999999998876 668899999999999998 44431 1111 12233333 344 7889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 800 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 800 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
+....+.+|++.++.+++..++...+. |+++.++.++.+.|+.+
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 999999999999999999988876544 99999999999999875
No 152
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=3.6e-10 Score=126.02 Aligned_cols=252 Identities=14% Similarity=0.108 Sum_probs=156.9
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC-------------CCCccEEEecCCCCCC--CcccCc
Q 002441 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPP--ETKQKH 626 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG-------------~~~~Dy~i~d~~~~p~--~~~~~~ 626 (921)
+...++||++--.......-+..+..+..|+-++|-+...... +...|.+|+-.-..-. .....+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 5678999987533333322233333345677677654322221 1224555532100000 011233
Q ss_pred ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002441 627 VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 627 ~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
.+++..+|+..-. +.+... ..........+.++++.+.+ ..|....+++++.++. +.+|++.|.+ .
T Consensus 159 ~~~~~~i~~gi~~~~~~~~~~--~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~ 228 (357)
T cd03795 159 RDKVRVIPLGLDPARYPRPDA--LEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----P 228 (357)
T ss_pred ccceEEecCCCChhhcCCcch--hhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----h
Confidence 4778888865321 111100 00001123344455666665 4788888888777654 7899998866 3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC---CCCcccHHHHhhcCCcEEecCCCcccccchh
Q 002441 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 779 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~---~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~ 779 (921)
....+.+.+.+.+.. ++|.|.|.++ ..+....|..||+++-|.. .+.|.+.+|||++|+|||+ +++++
T Consensus 229 ~~~~~~~~~~~~~~~-~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~-------~~~~~ 299 (357)
T cd03795 229 LEAELEALAAALGLL-DRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS-------TEIGT 299 (357)
T ss_pred hHHHHHHHHHhcCCc-ceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe-------cCCCC
Confidence 556677777788887 8999999987 6788889999999998874 3668899999999999998 44332
Q ss_pred H--HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 002441 780 S--LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 834 (921)
Q Consensus 780 ~--~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~ 834 (921)
. ++..-|-..++. .|.+++++....+.+|++.+..++...++.+.+. |+.+.+
T Consensus 300 ~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~ 356 (357)
T cd03795 300 GGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEE--FTADRM 356 (357)
T ss_pred chhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHh--cchHhh
Confidence 1 111113333443 5899999999999999999999999998886543 666543
No 153
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.19 E-value=2.1e-09 Score=119.35 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=123.6
Q ss_pred CCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002441 656 TNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 656 ~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
.++.++|+.+.+ ..|..+.+++++..+.+..|+.+|++.|.+......... .+.+.+.. ++|.|.|.. .+.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~~-~~v~~~g~~---~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGLE-GRVEFLGFR---DDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCCc-ceEEEeecc---ccH
Confidence 345566777764 478899999999999888899999999876432222211 34556665 789999973 467
Q ss_pred HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHH
Q 002441 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 810 (921)
Q Consensus 734 ~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 810 (921)
...|..+|+++-|..+ +.|++.+|||++|+|||+-...... -++.. |-..++. .|.+++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~-----~~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR-----EAVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch-----hhhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 7778889999988866 6688999999999999984332221 12221 3333443 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002441 811 ALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~l~~~~~~~~~~e 839 (921)
.+..++...++..... |+.+.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEEE--FDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999998888875433 88888887765
No 154
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.18 E-value=7.3e-10 Score=127.07 Aligned_cols=164 Identities=7% Similarity=0.005 Sum_probs=127.0
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002441 661 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 661 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
++..+. ...|..+.+++++..+.+..|+.+|.|+|.+ +.++.+++.+++.|+. ++|.|.|... ....|.
T Consensus 321 ~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l~-~~V~f~G~~~----~~~~~~ 391 (500)
T TIGR02918 321 SIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQAQ-DYIHLKGHRN----LSEVYK 391 (500)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEcCCCC----HHHHHH
Confidence 344444 4589999999999999999999999999876 4567888889999997 8999999753 334566
Q ss_pred cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC------C----HHHHHHHHHHH
Q 002441 739 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQL 805 (921)
Q Consensus 739 ~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~------~----~~~y~~~a~~l 805 (921)
.+|+++-|+-+ +.|.|++|||++|+|||+ ++++ ..=+-.-|...++.. | .+++.+..+.|
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 79999998866 779999999999999998 5543 221222366666654 2 77888888888
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.+ ++.+.++++..++.. .-|+.+..+..+++.++.
T Consensus 465 l~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 465 FN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 85 556888888888753 348999999999888764
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.18 E-value=7.9e-10 Score=102.54 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=101.6
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
+.+-+.++..|..++..|++++|.++|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002441 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
+++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998754433
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=99.18 E-value=7.2e-10 Score=130.41 Aligned_cols=174 Identities=11% Similarity=0.013 Sum_probs=125.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++||++.|+ .|..+.+++++.+++. ++.+|+|+|.|. .......+.....++|+. +||.|.+... ...-..
T Consensus 778 d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l~-drV~FlG~~d-e~lah~ 852 (977)
T PLN02939 778 SQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQSN-NNIRLILKYD-EALSHS 852 (977)
T ss_pred cceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCCC-CeEEEEeccC-HHHHHH
Confidence 46789999977 8999999999998885 688999998652 223456778888888986 8999998754 222345
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH----------HHhhcCCcccc--cCCHHHHHHHH
Q 002441 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS----------LLTKVGLKHLI--AKNEDEYVQLA 802 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~----------~l~~~gl~~~i--a~~~~~y~~~a 802 (921)
.|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++|+- ....-|-..++ ..|++++.+..
T Consensus 853 IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL 925 (977)
T PLN02939 853 IYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSAL 925 (977)
T ss_pred HHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHH
Confidence 78889999999977 779999999999988775 445410 00000122333 24777776555
Q ss_pred HHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002441 803 LQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 803 ~~l~----~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~ 848 (921)
.++. .|++.+.+++.+. |. .-|++..++..+++.|+.+..+
T Consensus 926 ~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 926 ERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 5443 4788877777532 32 3499999999999999998865
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=8.1e-09 Score=106.78 Aligned_cols=183 Identities=11% Similarity=0.030 Sum_probs=138.0
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (921)
...+.+.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34688899999999999999999999999999999988654 4899999999999999999999999998876 46
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 002441 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (921)
Q Consensus 118 a~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (921)
+++.+|.++...+ + ..+|+..|++.++..|+..-+... ... +..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHH
Confidence 7888888764443 1 357889999999999987543111 110 011
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002441 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 180 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
++.. .+.--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|......
T Consensus 170 l~~~------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDR------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHH------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1111 12223456777778888888888888888777654 56777778888888888887766544
No 158
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.16 E-value=1e-09 Score=122.82 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=124.6
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 659 FITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.+.||+.... .|..+.++++|..+.+. .|+.++++.|.+... .. .++. ++|.|+|.++..++...
T Consensus 193 ~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~--~~---------~~~~-~~v~~~g~~~~~~~~~~ 260 (365)
T cd03825 193 IILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPE--IP---------PDLP-FPVHYLGSLNDDESLAL 260 (365)
T ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchh--hh---------ccCC-CceEecCCcCCHHHHHH
Confidence 3456666554 89999999999987665 688999998865211 11 1454 78999999875667778
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHH
Q 002441 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~ 812 (921)
.|..+|++|-|+-+ +.|.+++|||.+|+|||+.....+..- +.. +-..++. .|.+++.+....+.+|++.+
T Consensus 261 ~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~-----~~~-~~~g~~~~~~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 261 IYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI-----VDH-GVTGYLAKPGDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred HHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh-----eeC-CCceEEeCCCCHHHHHHHHHHHHhCHHHH
Confidence 88999999998865 779999999999999998433222221 111 2233343 37899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 813 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 813 ~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.+++...++.... -|+++.+++.++++|++
T Consensus 335 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 335 EELGEAARELAEN--EFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhh
Confidence 9999998887643 48999999999999975
No 159
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.16 E-value=8.6e-10 Score=123.85 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=121.1
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002441 661 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 661 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
+++.+. ...|..+.+++++.++....|+.+|.+.|.+. ....+....++.++. ++|.|.|.. .+....|.
T Consensus 206 ~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~----~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~ 277 (372)
T cd04949 206 KIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGD----EEEKLKELIEELGLE-DYVFLKGYT---RDLDEVYQ 277 (372)
T ss_pred eEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCc----hHHHHHHHHHHcCCc-ceEEEcCCC---CCHHHHHh
Confidence 344444 45899999999999999999999999998762 345566667888987 899999853 45667788
Q ss_pred cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHH
Q 002441 739 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 739 ~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~ 813 (921)
.||++++|..+ +.|.+.+|||++|+|||+ ++++ ..-+-.-|-..++.. |.+++.+....+.+|++.+.
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~-------~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGLPVIS-------YDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCCCEEE-------ecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHH
Confidence 89999999977 778899999999999998 3332 111222255566666 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHH
Q 002441 814 NLRMSLRDLMSKSPVCDGQNFAL 836 (921)
Q Consensus 814 ~~r~~~~~~~~~~~l~~~~~~~~ 836 (921)
.+++..++.. . -|+++.++.
T Consensus 351 ~~~~~a~~~~-~--~~s~~~~~~ 370 (372)
T cd04949 351 KFSEAAYENA-E--RYSEENVWE 370 (372)
T ss_pred HHHHHHHHHH-H--HhhHHHHHh
Confidence 9998888762 2 266655443
No 160
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.15 E-value=1.1e-09 Score=124.01 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=118.6
Q ss_pred eEEEecCC--CCcCCHHHH----HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002441 660 ITFGSFNN--LAKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 660 ~~f~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
.+++.+.+ ..|..+.++ ++|..|.+..|+.+|+|+|.+. . .. +++++.. ++|.|+|.++ +.
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~-~~----~~~l~~~-~~V~~~G~v~---~~ 291 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----S-PA----VRALAAL-PGVTVTGSVA---DV 291 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----h-HH----HHHhccC-CCeEEeeecC---CH
Confidence 34444454 466666555 6788888889999999998652 1 11 2334443 6899999876 34
Q ss_pred HHhcccccEEecCCCC--CCcccHHHHhhcCCcEEecCCCcccccchhHHHh-hcCCcccccCCHHHHHHHHHHHhcCHH
Q 002441 734 MQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIAKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 734 ~~~~~~~D~~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia~~~~~y~~~a~~l~~d~~ 810 (921)
...|..+||++-|+.+ +.+++.+|||+||+|||+-. ++..-+. .-|..-+|+.|.+++.+...+|.+|++
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~-------~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP-------EAAEGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred HHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC-------cccccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 5667779999988754 44568999999999999843 2221111 113333567899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
.++.++++.|+.+... |+++..+..+++.|.
T Consensus 365 ~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 365 EREELGQAARRRVLQH--YHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhc
Confidence 9999999999886544 999999999999885
No 161
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=4.5e-10 Score=124.99 Aligned_cols=259 Identities=17% Similarity=0.099 Sum_probs=156.5
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCch-hhhhcCCCceEEeeccCCC----CC-CCCCccEEEecCCCCCCCcccCc--c
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKL-GMMACQPAPVQVTWIGYPN----TT-GLPTIDYRITDSLADPPETKQKH--V 627 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~-~~~a~r~APvQ~~~~G~p~----tt-G~~~~Dy~i~d~~~~p~~~~~~~--~ 627 (921)
..+.+.|...++||++--.....+.-+ .....+..|+=++.-++.. .. -....|.+++-.-..-......+ .
T Consensus 86 ~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 165 (359)
T cd03823 86 AEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVANGLFA 165 (359)
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHHcCCCc
Confidence 456678888999998754432211111 1122334566554433211 11 11222555542110000011111 2
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 002441 628 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 705 (921)
Q Consensus 628 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~ 705 (921)
+++..+|+.. .... .. +... ..+++.++|+.+.+. .|..+.+++++..+.. |+.+|++.|.+... .
T Consensus 166 ~~~~vi~n~~-~~~~--~~-~~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~----~ 233 (359)
T cd03823 166 EKISVIRNGI-DLDR--AK-RPRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLEL----E 233 (359)
T ss_pred cceEEecCCc-Chhh--cc-cccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhh----h
Confidence 4566666531 1111 11 1111 234556667777654 7888889999988776 89999999865321 1
Q ss_pred HHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC--CCCcccHHHHhhcCCcEEecCCCcccccchhHHHh
Q 002441 706 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 783 (921)
Q Consensus 706 ~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 783 (921)
...... +.. ++|.|.|.++ ..+....|..+|+++-|.. .+.+.+.+|||++|+|||+-...... .++.
T Consensus 234 ~~~~~~---~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~ 303 (359)
T cd03823 234 EESYEL---EGD-PRVEFLGAYP-QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVR 303 (359)
T ss_pred HHHHhh---cCC-CeEEEeCCCC-HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhc
Confidence 111111 444 7899999986 6888899999999998875 36788999999999999984332111 1222
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 784 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 784 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
. |...++. .|.+++++....+.+|++.+..+++..++.... +.+++.+++.|+
T Consensus 304 ~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 358 (359)
T cd03823 304 D-GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI------EDQAEEYLKLYR 358 (359)
T ss_pred C-CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH------HHHHHHHHHHhh
Confidence 2 2233433 457999999999999999999999988877532 788888888885
No 162
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.14 E-value=3.9e-10 Score=125.74 Aligned_cols=258 Identities=18% Similarity=0.153 Sum_probs=161.5
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhc--CCCceEEeeccCCCCC-----CCCCccEEEecCCCCCCCcc---cC
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 625 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~--r~APvQ~~~~G~p~tt-----G~~~~Dy~i~d~~~~p~~~~---~~ 625 (921)
..+.+.+...++||++--+.++. -...++. .-.|+-.++.|+.... .+...|.+++-.--...... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 35677888999999986443332 1222222 2367666666654322 12345666542111111111 12
Q ss_pred cccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 002441 626 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKP 697 (921)
Q Consensus 626 ~~e~~~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 697 (921)
..+++..+|+..- .|.+...... .+....++++.++++...+. .|..+.+++++..+....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2467777876421 0111100000 00011234556667666654 89999999999999888889999999977
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-C-CCCcccHHHHhhcCCcEEecCCCcccc
Q 002441 698 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-P-YAGTTTTCESLYMGVPCVTMAGSVHAH 775 (921)
Q Consensus 698 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~-~-~~g~~t~~eal~~GvPvvt~~g~~~~~ 775 (921)
...+...+.+.+.+.+.|+. ++|.|.|.. .+....+..+|+++-|+ . .+.|+|.+|||++|+|||+-......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~- 300 (355)
T cd03819 226 QGRRFYYAELLELIKRLGLQ-DRVTFVGHC---SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGAR- 300 (355)
T ss_pred cccchHHHHHHHHHHHcCCc-ceEEEcCCc---ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcH-
Confidence 55555667777788888987 899999983 46677777899999988 3 47789999999999999983321111
Q ss_pred cchhHHHhhcCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhc
Q 002441 776 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSK 825 (921)
Q Consensus 776 r~~~~~l~~~gl~~~i--a~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~~ 825 (921)
.++.. |...++ ..|.+++++... .+..|++.+.++++..++.+..
T Consensus 301 ----e~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 301 ----ETVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred ----HHHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 11222 223333 357888888774 4456899999999998887653
No 163
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.14 E-value=2.7e-09 Score=119.34 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=115.5
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecC
Q 002441 667 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 746 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~ 746 (921)
...|....+++++.++.. +.+|+++|.+.......+.+.+ ..++. ++|.|.|.++ ..+....+..+|+++-|
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~---~~~~~-~~V~~~g~~~-~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKE---KAAAD-PRIIFVGPIY-DQELLELLRYAALFYLH 274 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHH---HhCCC-CcEEEccccC-hHHHHHHHHhCCEEEeC
Confidence 457888888888887643 7899999876333333333322 56665 8999999987 57788888889999877
Q ss_pred CCC--CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002441 747 FPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 824 (921)
Q Consensus 747 ~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 824 (921)
... +.+.+.+|||++|+|||| +++++ +-..++-..++..+.+.+.+....|.+|++.+..++...++...
T Consensus 275 s~~~e~~~~~~~EAma~G~PvI~-------s~~~~-~~e~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 346 (363)
T cd04955 275 GHSVGGTNPSLLEAMAYGCPVLA-------SDNPF-NREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIR 346 (363)
T ss_pred CccCCCCChHHHHHHHcCCCEEE-------ecCCc-cceeecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 754 567899999999999998 45541 00111112233344444888999999999999999998888765
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 002441 825 KSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 825 ~~~l~~~~~~~~~~e~~~~ 843 (921)
. .|+++.++.++++.|+
T Consensus 347 ~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 347 E--KYTWEKIADQYEELYK 363 (363)
T ss_pred H--hCCHHHHHHHHHHHhC
Confidence 4 4899999999999884
No 164
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=9.5e-10 Score=122.70 Aligned_cols=165 Identities=18% Similarity=0.128 Sum_probs=124.8
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++|+.+++. .|..+.+++++.++... |+.+|++.|.+. ....+. +. .++|.|.|.++ .++..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~----~~~~~~------~~-~~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGP----ARARLE------AR-YPNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCc----hHHHHh------cc-CCcEEEEeccC-HHHHH
Confidence 344556666644 78889999999999888 999999998652 222222 33 37899999865 57888
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHH
Q 002441 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~ 811 (921)
..+..+|++|-|... +.|+|.+|||++|+|||+-....+... +.. +-..++ ..|.+++++....+..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~-----i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI-----VTD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh-----hcC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 889999999999866 678999999999999998665443332 222 223333 35677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 812 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
+..+....++.. .-|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999888775 33899999999988773
No 165
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.12 E-value=7.3e-10 Score=125.33 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=124.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
++.++|+++.++ .|..+.+++++.++.+..|+.. +.++|.+ .....+++.++..+.. ++|.|+|.++ ..+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~~-~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPEN-ISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCCC-ceEEEecCCC-hHH
Confidence 445667777754 7889999999999999888654 4556654 4566777777777776 8999999987 467
Q ss_pred HHHhcc--cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhhcCCcc-ccc--CCHHHHHHHHHH
Q 002441 733 HMQAYS--LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKH-LIA--KNEDEYVQLALQ 804 (921)
Q Consensus 733 ~~~~~~--~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~~gl~~-~ia--~~~~~y~~~a~~ 804 (921)
....|. .+|+++-|+.+ +.+.+++|||++|+|||+ +++|+. ++.. |-.. ++. .|.+++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVDN-GGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhcC-CCcEEEeCCCCCHHHHHHHHHH
Confidence 777775 47899888866 668899999999999997 566521 1111 2222 333 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002441 805 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 838 (921)
+.+|++.+..+++..|+..... |+.+...+.|
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999987644 8887766554
No 166
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.12 E-value=7.2e-10 Score=123.76 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=134.7
Q ss_pred ecCCCCCCCcccCcccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHhH
Q 002441 613 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 685 (921)
Q Consensus 613 ~d~~~~p~~~~~~~~e~~~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 685 (921)
+|.++.|......+.+..+..++ ++. |.|.... ....+. +++. ++++...++ .|..+.+++++.+|.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v~-GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNVH-GVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecCc-eechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 56566665544335555655553 332 2332111 111111 2332 235556665 89999999999999998
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc
Q 002441 686 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 764 (921)
Q Consensus 686 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvP 764 (921)
.|+.+|+|+|.| +.++.|++.+.+.|++ .++ |.|... ..+ .|..+|||+-|+.+ +.|+|++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~~---~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-ADP---LFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HHH---HHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999987 6788899999999986 555 777643 343 45557999999977 889999999999999
Q ss_pred EEecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 765 CVTMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 765 vvt~~g~~~~~r~~~-~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
||+- ++++ .++.. |-..+...|.+++++....+..++. ..++...++ .|+++..++.+++.|+
T Consensus 327 VVa~-------~~~~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 327 VVCA-------NHPSNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRVAD 390 (462)
T ss_pred EEEe-------cCCCcceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHHhc
Confidence 9983 3331 22222 4455666899999999998877532 233333222 4889888888888775
No 167
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.12 E-value=1.4e-09 Score=127.55 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=130.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CH---HHHHHHHHHHHHcCCCCCCEEEccCc
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CD---SVRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~---~~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
+..++++..|+ .|..+.+++++.++....+++.|+|+|++.. +. ...+++.+.+.++|+. ++|.|+|..
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~~ 627 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGAQ 627 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccCc
Confidence 44457777766 7999999999988765557899999986532 11 1446788889999998 999999975
Q ss_pred CCcH---HHHHhc-ccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhh--cCCccccc--CCHHHH
Q 002441 728 LLNH---DHMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLIA--KNEDEY 798 (921)
Q Consensus 728 ~~~~---~~~~~~-~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~--~gl~~~ia--~~~~~y 798 (921)
.... +....+ +.+|||+-|.-| +.|.|.+|||+||+|||+ +++|+ +-.. -|...++. .|.++.
T Consensus 628 ~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~GG-~~EiV~dg~tGfLVdp~D~eaL 699 (784)
T TIGR02470 628 LNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFGG-PLEIIQDGVSGFHIDPYHGEEA 699 (784)
T ss_pred CCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHH
Confidence 3222 333332 346899988877 889999999999999997 77772 1111 13333333 477888
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 002441 799 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 847 (921)
Q Consensus 799 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~--~~~~ 847 (921)
.+...++. +|++.+.++++..++++... |+++.+++.+.+... ..|.
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~--FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYEK--YTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhHhh
Confidence 88777654 79999999999988876544 999999999998874 4574
No 168
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.11 E-value=2.1e-09 Score=120.04 Aligned_cols=168 Identities=18% Similarity=0.120 Sum_probs=123.4
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 658 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++.+.+ ..|..+.+++++..+....|+.+|++.|.+... .......+++.+.. ++|.|.|.++ ..+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~ 268 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGLG-DRVRFLGYVS-DEELAA 268 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCCC-CeEEECCCCC-hhHHHH
Confidence 3444555554 478899999999999999888999998864322 12222333567776 8999999987 578888
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002441 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 814 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~ 814 (921)
.+..+|++|-|.-+ +.|.+.+|||++|+|||+-....+..-++ ..|. -+...|.++.++....+.+|++.+..
T Consensus 269 ~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 269 LYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALREE 342 (365)
T ss_pred HHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988765 66889999999999999844332222111 1111 13356899999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHH
Q 002441 815 LRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 815 ~r~~~~~~~~~~~l~~~~~~~~~~e 839 (921)
+++..++.. .-|+++.+++.+.
T Consensus 343 ~~~~~~~~~---~~~sw~~~~~~~~ 364 (365)
T cd03809 343 LRERGLARA---KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHH---HhCCHHHHHHHHh
Confidence 998887543 2388888887764
No 169
>PLN00142 sucrose synthase
Probab=99.11 E-value=1.7e-09 Score=126.91 Aligned_cols=177 Identities=13% Similarity=0.030 Sum_probs=130.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CHH---HHHHHHHHHHHcCCCCCCEEEccCcC
Q 002441 659 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CDS---VRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 659 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
..+++++.|+ .|..+.+++++.++.+..|+++|+|+|++.. +.. ...++.+.+.+.|+. ++|.|+|...
T Consensus 573 kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~~ 651 (815)
T PLN00142 573 KPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQT 651 (815)
T ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCcC
Confidence 3457777766 7889999999999877778999999986521 111 235678888999998 9999998643
Q ss_pred Cc---HHHHHhcc-cccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHh--hcCCccccc--CCHHHHH
Q 002441 729 LN---HDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT--KVGLKHLIA--KNEDEYV 799 (921)
Q Consensus 729 ~~---~~~~~~~~-~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~--~~gl~~~ia--~~~~~y~ 799 (921)
.. .+....+. .+|||+-|+.| +.|.|.+|||+||+|||+ +++|+ +-. .-|...++. .|.++..
T Consensus 652 ~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG-~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 652 NRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGG-PAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHHH
Confidence 22 34555444 47999988877 779999999999999997 66662 111 114444443 4788887
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHH
Q 002441 800 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMW 846 (921)
Q Consensus 800 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~--~~~ 846 (921)
+.... +..|++.+.++++..++++.. .|+++.++.++++.-. ..|
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~~~~~~ 774 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGGVYGFW 774 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcchh
Confidence 77654 458999999999998888654 4999999999998764 356
No 170
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.10 E-value=2.8e-09 Score=117.78 Aligned_cols=313 Identities=12% Similarity=0.003 Sum_probs=170.6
Q ss_pred eeeccCCCcc------cchhhhhhhcccccccCCceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccC------CCHH
Q 002441 489 VIGYVSPDYF------THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 556 (921)
Q Consensus 489 riGyvS~d~~------~H~v~~~~~~~l~~hd~~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~ 556 (921)
+|.++++.+. ...+..++..+...+.+.+.||++++......... ...... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccC--CCcccccchhhHhhHHHHH
Confidence 5677776652 22233445566666666788999887654321111 111000 011111000 0123
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCC------CCccEEEecCCCCCCCcccCcccce
Q 002441 557 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 630 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG~------~~~Dy~i~d~~~~p~~~~~~~~e~~ 630 (921)
.+.+.|...++||+.--+...... ....+-.|+-++..|.+..... ...|.+++-........... .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLPLP---FARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL--PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccchh---hhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc--ccc
Confidence 567788889999997433222211 3344556777777666543221 22233332111111001111 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 002441 631 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 710 (921)
Q Consensus 631 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 710 (921)
..+|+.. ++....+ .+ .....++|..--...|..+.++++..+ ++.+|+++|.+.. ...+...
T Consensus 153 ~vi~ngv---d~~~~~~----~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~----~~~~~~~ 215 (335)
T cd03802 153 ATVHNGI---DLDDYPF----RG-PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD----PDYFYRE 215 (335)
T ss_pred EEecCCc---ChhhCCC----CC-CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC----HHHHHHH
Confidence 6666532 1111110 01 111222232222568888777776432 5789999987632 2233333
Q ss_pred HHHcC-CCCCCEEEccCcCCcHHHHHhcccccEEecCCC--CCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002441 711 LEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787 (921)
Q Consensus 711 ~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 787 (921)
..+.. +. ++|.|.|.++ ..+....+..+|+++-|.. .+.|.+++|||+||+|||+-....... +-.-|.
T Consensus 216 ~~~~~~~~-~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e------~i~~~~ 287 (335)
T cd03802 216 IAPELLDG-PDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPE------VVEDGV 287 (335)
T ss_pred HHHhcccC-CcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchh------heeCCC
Confidence 33332 44 8999999987 4677788899999998874 477899999999999999833221111 111234
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 788 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 788 ~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
..++..+.+++++....+..+.. +..|+... ..|+++.++.++++.|+
T Consensus 288 ~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 288 TGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred cEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 55667778888888877765432 22333332 34899999999999884
No 171
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.2e-08 Score=99.80 Aligned_cols=282 Identities=18% Similarity=0.138 Sum_probs=205.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
.+..+|.+|++++..-.+.+|.+... +..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 66778888998888888888876544 66778888888899999999999888888888888888888899999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002441 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
+..|+.....+.....-.......-+.+.+..+++..+....++.-.. +. +....+.|-+..+.|+++.|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 999988887765432222344445566666777777776655543211 11 234455666777788999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~ 337 (921)
+-|+.+++...-.+-.-++++.+++..++++.|+++..+.++. .|+ + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999998888888899999999999999999988887764 221 1 3556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 338 NNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+..+-++++.++++.|.+.+...--.. .-++..+.+++..- ..+++.+...-++-.++++|--.+.+.++-.+|.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhh
Confidence 667778888888888876654321111 12355677776543 345677777778888888887778888888888888
Q ss_pred CCHHHHHHHH
Q 002441 416 GSISLAIDAY 425 (921)
Q Consensus 416 g~~~~A~~~~ 425 (921)
.-++.|.+.+
T Consensus 324 eyf~lAADvL 333 (459)
T KOG4340|consen 324 EYFDLAADVL 333 (459)
T ss_pred HHHhHHHHHH
Confidence 7777776644
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.3e-07 Score=105.74 Aligned_cols=325 Identities=17% Similarity=0.175 Sum_probs=214.2
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHH
Q 002441 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~a~~~la~~~ 126 (921)
...|+.+.|.+..+-+ .+...|-++|....+..+.+-|.-++ +++.+ +|+ +.-...|.+.
T Consensus 739 vtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHH
Confidence 3468888887776554 23457777877777776666655443 33322 333 3334556777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..+|-.++|..+|++.-+ +-.+-..|...|.+++|.+..+.--.+ ..-..|++.+..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 888999999999998754 333455677789999998876542222 234578899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 002441 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (921)
Q Consensus 207 ~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (921)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 22333 2456777888989999999999999987653
Q ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC-------
Q 002441 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (921)
Q Consensus 267 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~------- 333 (921)
++.+-.+...+|+.++|..+.++ ..+..+.+.+|..|...|++.+|+.+|.++-.. ..++
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33344555556777777665554 245566777788888888888887777665433 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------hCC-CCHHHHHHHHHHHHHc
Q 002441 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (921)
Q Consensus 334 -------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~ 381 (921)
..-....+..|...| +.+.|..+|.+| ++ +++ .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111122334444444 555555555432 21 123 4577888888888888
Q ss_pred CCHHHHHHHHHHH------HHhC----------------CC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 382 GKMDAAAEMIEKA------IAAN----------------PT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 382 g~~~~A~~~l~~a------l~~~----------------p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
.+|++|..++-.+ +++. |. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999988766544 3321 11 1357888999999999999998888776
No 173
>PLN02316 synthase/transferase
Probab=99.09 E-value=2.2e-09 Score=128.91 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCCEEEccCcC
Q 002441 653 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 728 (921)
Q Consensus 653 ~~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~rv~~~~~~~ 728 (921)
.+++ .+.+++|++.|+ .|..+.+++++.++++ ++.+|+|+|.|- +......|++...++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3454 356789999977 7899999999999986 579999988652 334677888888989885 58999987543
Q ss_pred CcHHHH--HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccC------------
Q 002441 729 LNHDHM--QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------ 793 (921)
Q Consensus 729 ~~~~~~--~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~------------ 793 (921)
+.+ ..|..+||||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|.+
T Consensus 910 ---e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g 972 (1036)
T PLN02316 910 ---EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQG 972 (1036)
T ss_pred ---HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhccccccccccccccc
Confidence 332 578889999999977 779999999999987665 5666 55554432
Q ss_pred -----------CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 794 -----------NEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 794 -----------~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
|++++.....++..+ ++....+++..+..|. .-|++...+..++++|+++
T Consensus 973 ~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 973 LEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred cCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH
Confidence 567777666666665 3445556766667664 3499999999999999875
No 174
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.09 E-value=4.9e-09 Score=118.84 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=131.4
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 656 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 656 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
+.+.++|+.+.++ .|..+.+++++.++....|+.+|+++|++... ......+....+..|+. ++|.|.|.++ ..
T Consensus 217 ~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 294 (398)
T cd03800 217 DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVS-RE 294 (398)
T ss_pred CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCC-HH
Confidence 4455667777765 67889999999999988999999999865432 12234466677788987 8999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 808 (921)
+....+..+|++|-|.-+ +.|.+.+|||++|+|||+-..... ..++.. +-..++. .|.+++++....+.+|
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~-----~e~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGP-----RDIVVD-GVTGLLVDPRDPEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCH-----HHHccC-CCCeEEeCCCCHHHHHHHHHHHHhC
Confidence 888889999999988765 668899999999999997332211 112222 2223443 4799999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002441 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLE 839 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e 839 (921)
++.+..++...++..... |+++.++..++
T Consensus 369 ~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~ 397 (398)
T cd03800 369 PALRRRLSRAGLRRARAR--YTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHh--CCHHHHHHHHh
Confidence 999999999888875433 88888887765
No 175
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=2.8e-08 Score=106.63 Aligned_cols=155 Identities=23% Similarity=0.238 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 002441 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (921)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (921)
|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...|+.++|.+.+++++...|.....
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l------ 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL------ 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH------
Confidence 78889999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 002441 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (921)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (921)
..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..|...
T Consensus 377 -~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~ 438 (484)
T COG4783 377 -QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALA 438 (484)
T ss_pred -HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhC
Confidence 667788888889999999999999999999999999999999999987766544 45667778
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 002441 239 GDLESAIACYERCLAVSPN 257 (921)
Q Consensus 239 g~~~~A~~~~~~al~~~p~ 257 (921)
|++++|+..+..+.+...-
T Consensus 439 G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCHHHHHHHHHHHHHhccC
Confidence 9999999999998887643
No 176
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.07 E-value=2.4e-09 Score=122.58 Aligned_cols=173 Identities=14% Similarity=0.030 Sum_probs=122.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCcEEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCCEEEccC
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~-------~~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+..+++++.++ .|..+.++++++++ +...|+.+| +.|.+-..+ ...+.+...+.+.|+. ++|.|.|.
T Consensus 247 ~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~g~ 324 (439)
T TIGR02472 247 EKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGCRDDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYPKH 324 (439)
T ss_pred CCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCCccccccccHHHHHHHHHHHHHHHHcCCC-ceEEecCC
Confidence 34456666655 79999999999864 333344332 445431111 1233456667888997 89999998
Q ss_pred cCCcHHHHHhcccc----cEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH-HhhcCCcccc--cCCHHHH
Q 002441 727 ILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLI--AKNEDEY 798 (921)
Q Consensus 727 ~~~~~~~~~~~~~~----D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~i--a~~~~~y 798 (921)
++ .++....|..+ |+++-|+-+ +.|.|.+|||++|+|||+ +++++.- +-.-|-..++ ..|.+++
T Consensus 325 ~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~gg~~eiv~~~~~G~lv~~~d~~~l 396 (439)
T TIGR02472 325 HR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDGGPRDIIANCRNGLLVDVLDLEAI 396 (439)
T ss_pred CC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCCCcHHHhcCCCcEEEeCCCCHHHH
Confidence 76 46666667655 999888866 669999999999999997 6665110 1111223344 3589999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002441 799 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 799 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~ 842 (921)
.+...++.+|++.++++++..++++... |+++.++.++++.+
T Consensus 397 a~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 397 ASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 9999999999999999999999887544 99999999988765
No 177
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.07 E-value=2.6e-09 Score=127.79 Aligned_cols=179 Identities=15% Similarity=0.074 Sum_probs=134.0
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCCEEEcc
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLP 725 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~ 725 (921)
.+..++.++.++ .|....+++++..+... .|+.+| ++|.+-. .......+...+.+.|+. ++|.|.|
T Consensus 477 pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~FlG 554 (1050)
T TIGR02468 477 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYPK 554 (1050)
T ss_pred CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEecC
Confidence 344456777765 89999999999988653 355554 4443211 123456788888999997 9999999
Q ss_pred CcCCcHHHHHhcccc----cEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHH-HhhcCCccccc--CCHHH
Q 002441 726 LILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA--KNEDE 797 (921)
Q Consensus 726 ~~~~~~~~~~~~~~~----D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~ia--~~~~~ 797 (921)
.++ ..+....|+.| |||+-|.-+ +.|.|.+|||+||+|||+ +++|+.- +..-|...+++ .|.++
T Consensus 555 ~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~~g~nGlLVdP~D~ea 626 (1050)
T TIGR02468 555 HHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHRVLDNGLLVDPHDQQA 626 (1050)
T ss_pred CCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhccCCcEEEECCCCHHH
Confidence 876 46666777766 699998877 779999999999999997 6666210 11123344443 58999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002441 798 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 798 y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~ 848 (921)
+.+....+.+|++.++++++..+++.. .|++...++.+.+.+..+-.|
T Consensus 627 LA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 627 IADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888763 399999999999999877544
No 178
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.07 E-value=5.3e-08 Score=99.64 Aligned_cols=248 Identities=14% Similarity=0.129 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 002441 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------A 225 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 225 (921)
-.++.+++..+....++.+++.+-+..+.+... -..+...++..+..++.++++++.|+++++...++ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 345677777777888888998888877776322 23567779999999999999999999999874432 3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC------
Q 002441 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN------ 296 (921)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------ 296 (921)
.++..+|.++....++++|+-+..++.++..... ......+.+++.++..+..+|..-.|.++.+++.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5788999999999999999999999988754322 1122234445555666666666666666666665442
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
+........+|.+|...|+.+.|..-|+.+...... +-..+|. .+++...+.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmgq-------------------------v~al~g~Ak 294 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMGQ-------------------------VEALDGAAK 294 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHHH-------------------------HHHHHHHHH
Confidence 112234445555555555555555555555432110 0001111 223333333
Q ss_pred HHHHcCCHH-----HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 377 VYTVQGKMD-----AAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 377 ~~~~~g~~~-----~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
++....-.. .|++.-++++++.... ...+..++.+|..+|.-++=...+.++-+..
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 333332222 2566666665553221 3567778888888888777777777765543
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=2e-08 Score=101.55 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=125.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 119 (921)
.+.+.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 367889999999999999999999999999998875 47899999999999999999999999999999864 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002441 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (921)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (921)
+.+|.+++... ...+|+..|+..++..|++.-+.... . -+..++..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~----~--------------~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK----K--------------RLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH----H--------------HHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH----H--------------HHHHHHHHH----
Confidence 88888876543 34589999999999999976542110 0 011111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHH
Q 002441 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAI 245 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 245 (921)
+.--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2233456777777777777777777777777765 356777777777777777443
No 180
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.06 E-value=2.3e-09 Score=121.15 Aligned_cols=260 Identities=11% Similarity=-0.001 Sum_probs=157.6
Q ss_pred CHHHHHHHHHhCCccEEEecC-CCCCCCchh-hhhcCCCceEEee----ccCCCCCCCCCccE--------EE----ecC
Q 002441 554 DEKKVAAMVREDKIDILVELT-GHTANNKLG-MMACQPAPVQVTW----IGYPNTTGLPTIDY--------RI----TDS 615 (921)
Q Consensus 554 ~~~~~a~~i~~d~idiLvdl~-g~t~~~r~~-~~a~r~APvQ~~~----~G~p~ttG~~~~Dy--------~i----~d~ 615 (921)
+-..+.+.|.+.+.||++=-+ +|-+....+ ..|.|.-||-.++ ..|-..-|+..+-- ++ +|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 346799999999999987222 222222111 2345555655444 22222222222111 11 455
Q ss_pred CCCCCCcccCcccceEEcCCCcc---ccCCCCCCCCCCCCCCC---CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCc
Q 002441 616 LADPPETKQKHVEELIRLPECFL---CYTPSPEAGPVCPTPAL---TNGFITFGSFNNLAKITPKVLQVWARILCAVPNS 689 (921)
Q Consensus 616 ~~~p~~~~~~~~e~~~~lp~~~~---~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~ 689 (921)
++.|.+....+....+...+ ++ .|.|....... ...++ +.+ +.|..==...|....++++|..+....|+.
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L~~~~pnv 578 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKHKNELDGF 578 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCc-eEEEEcccccCCHHHHHHHHHHHHhhCCCe
Confidence 66665544333333333222 22 13332211100 11122 233 334332245999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEec
Q 002441 690 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 690 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~ 768 (921)
+|+|+|.| +.++.+++.+.++|+. |.|+|...... ..|+.+|||+-|+.+ +.|++++|||+||+|||+-
T Consensus 579 rLvIVGDG----P~reeLe~la~eLgL~---V~FLG~~dd~~---~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVAT 648 (794)
T PLN02501 579 NLDVFGNG----EDAHEVQRAAKRLDLN---LNFLKGRDHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVVCA 648 (794)
T ss_pred EEEEEcCC----ccHHHHHHHHHHcCCE---EEecCCCCCHH---HHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEe
Confidence 99999976 5677888888888883 89998765322 456669999999877 7799999999999999974
Q ss_pred CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002441 769 AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 841 (921)
Q Consensus 769 ~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~ 841 (921)
. +++.-.-.-|-..++..|.+++++.+.++..|++.+...+ ++ .-++++.++..|++.
T Consensus 649 d-------~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~----a~----~~~SWeAaadrLle~ 706 (794)
T PLN02501 649 D-------HPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPE----QR----YNLSWEAATQRFMEY 706 (794)
T ss_pred c-------CCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHH----HH----hhCCHHHHHHHHHHh
Confidence 3 3211110113344567899999999999999886432222 11 147888888777764
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.6e-09 Score=116.42 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 128 (921)
..+...|..++..|+|++|+.+|+++++.+|++..+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
.|++++|+..|+++++++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999987654443
No 182
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=2.1e-08 Score=107.58 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
|....+.+..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+......++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCC
Q 002441 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452 (921)
Q Consensus 377 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~ 452 (921)
+|.+.|++.+|+..++..+..+|+++..|..||+.|..+|+..+|...+.+.+.+.-+...+..-+..+......+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999988888777766555544444333
No 183
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.05 E-value=1.9e-08 Score=102.82 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 002441 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (921)
.+++.+++..+.+..++.+++.+-+..+...... ......++..+..++.++++++.|+++++...++.+....
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE- 161 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE- 161 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee-
Confidence 4566777777777777777777776666543222 2455567777777777777777777777654333222111
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 341 (921)
.+++..+|..+....++++|+-+..++.++... +.... ....+++.++
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k----------------------------yr~~~lyhma 213 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK----------------------------YRAMSLYHMA 213 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH----------------------------HHHHHHHHHH
Confidence 123334444444444555555555544433211 00000 0023445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHH
Q 002441 342 VIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLG 409 (921)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la 409 (921)
..+..+|..-.|.++.+++.++. +........+|.+|...|+.+.|..-|+++..... ...+++...|
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 66666666666666666665542 22344556667777777777777777776665421 1134555566
Q ss_pred HHHHHcCCHHH-----HHHHHHHHhhcCCCC----hhhHhhHHHHhhhccCCChHHHH
Q 002441 410 VLYRDAGSISL-----AIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLF 458 (921)
Q Consensus 410 ~~~~~~g~~~~-----A~~~~~~al~l~P~~----~~a~~~~l~a~~~~~~~~~~~~~ 458 (921)
.++....-..+ |++.-++++++...- ........++..|-..|..++.-
T Consensus 294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 66555444444 777777777765432 22233445667776666555443
No 184
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.05 E-value=3.6e-09 Score=108.47 Aligned_cols=209 Identities=20% Similarity=0.227 Sum_probs=147.9
Q ss_pred CCccEEEecCCCCCCCc---ccCcccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHH
Q 002441 606 PTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQV 678 (921)
Q Consensus 606 ~~~Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~ 678 (921)
..+|-.|.=.++.-+.+ ...-.+++.-+|+.-. .|.|.+.. ..+++.++.-..+|+ .|..+-...+
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 44555554333433333 2334577888887422 24442211 112333555566676 7999999999
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC-CCCcccHHH
Q 002441 679 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAGTTTTCE 757 (921)
Q Consensus 679 ~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~-~~g~~t~~e 757 (921)
-.+|-+..|+.++++.|+| +-+..+++..+++-+. +||.++|.++ +++.-..|..-||||.|+- ...|++.+|
T Consensus 217 Ip~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l~-~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivE 290 (426)
T KOG1111|consen 217 IPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFLQ-DRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVE 290 (426)
T ss_pred HHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhcc-CceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHH
Confidence 9999999999999999977 6777888888888887 9999999988 6888889999999999995 488999999
Q ss_pred HhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002441 758 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 829 (921)
Q Consensus 758 al~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~ 829 (921)
|+.||+|||+ .|+| |+||.+..| +++.++....-.... ...-....+++ +.++
T Consensus 291 AaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~---~~~p~~~h~~v--~~~y 351 (426)
T KOG1111|consen 291 AASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKL---RTLPLEFHDRV--KKMY 351 (426)
T ss_pred HHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHh---ccCchhHHHHH--HHhc
Confidence 9999999997 9999 999877554 444443333322211 11112234444 4569
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002441 830 DGQNFALGLESTYRNMW 846 (921)
Q Consensus 830 ~~~~~~~~~e~~~~~~~ 846 (921)
+|+..++.-|..|.++-
T Consensus 352 ~w~dVa~rTekvy~r~~ 368 (426)
T KOG1111|consen 352 SWKDVAERTEKVYDRAA 368 (426)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999997653
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=5.4e-08 Score=100.64 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHH
Q 002441 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (921)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (921)
.++..++..|..++..|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++..|+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788999999999999999999999999999988654 4899999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (921)
Q Consensus 157 a~~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (921)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445677776643332 1356888899999999886432 1222211111
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhh
Q 002441 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (921)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~ 275 (921)
...-..--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133345789999999999999999999999988754 5667777888877743
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=5.4e-09 Score=114.99 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
.|..++..|++++|+.+|+++++++|++..++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhcCCCChhhHh
Q 002441 420 LAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 420 ~A~~~~~~al~l~P~~~~a~~ 440 (921)
+|+..|+++++++|++..+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555544433
No 187
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.99 E-value=5.3e-09 Score=103.23 Aligned_cols=156 Identities=14% Similarity=0.172 Sum_probs=120.2
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 655 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
.+++.++|+.+++. .|....+++++..+... .|+..|++.|.+ .....+.......++. ++|.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLK-ENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCG-TTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccc-cccccccccc-cc
Confidence 34566777777755 78999999999998876 899999999843 3556677888888987 8999999987 67
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 808 (921)
+....|..+||++-|..+ ++|++.+|||++|+|||+-....+.. +-.-+...++. .|.++.++....+..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e------~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNE------IINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHH------HSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCce------eeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 899999999999999987 88999999999999999833222211 11123344444 4669999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002441 809 VTALANLRMSLRDL 822 (921)
Q Consensus 809 ~~~~~~~r~~~~~~ 822 (921)
++.+..|++..|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988764
No 188
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.98 E-value=1.1e-08 Score=116.08 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=116.4
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhH------cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcC
Q 002441 657 NGFITFGSFNN--LAKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 657 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
++.+++++..+ ..|..+.+++++..+.+. .|+.+|+++|.| ..++.+++.+++.|++ +.+.|.|.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~~ 304 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWLS 304 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcCC
Confidence 44455666665 478889999999988753 478999999876 4578888899999996 5555666665
Q ss_pred CcHHHHHhcccccEEecCCC----CCCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccCCHHHHHHHH
Q 002441 729 LNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAKNEDEYVQLA 802 (921)
Q Consensus 729 ~~~~~~~~~~~~D~~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~~~~~y~~~a 802 (921)
.++....|..+||++-+.+ ++.+++.+|||+||+|||+ ++++ ..++. -|-..++..|.+++.+..
T Consensus 305 -~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-------s~~~~~~eiv~-~~~~G~lv~d~~~la~~i 375 (415)
T cd03816 305 -AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------LDFKCIDELVK-HGENGLVFGDSEELAEQL 375 (415)
T ss_pred -HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-------eCCCCHHHHhc-CCCCEEEECCHHHHHHHH
Confidence 6788889999999984333 2357899999999999998 3332 11222 245556667999999999
Q ss_pred HHHhcC---HHHHHHHHHHHHHHh
Q 002441 803 LQLASD---VTALANLRMSLRDLM 823 (921)
Q Consensus 803 ~~l~~d---~~~~~~~r~~~~~~~ 823 (921)
..|.+| ++.+.+|++..|+..
T Consensus 376 ~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 376 IDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999 899999988887764
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=6.1e-08 Score=97.97 Aligned_cols=175 Identities=23% Similarity=0.220 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46789999999999999999999999999998875 5789999999999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHH-----------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002441 158 IVLTDLGTSLKL-----------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (921)
Q Consensus 158 ~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (921)
.+++.+|.+++. .+...+|+..|+..++..|++..+ .+|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHH
Confidence 345555555443 333457788888888887776432 122222211111 1133
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhhhh
Q 002441 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (921)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~~~ 276 (921)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 446789999999999999999999999999875 45666777888887543
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=3.5e-08 Score=105.36 Aligned_cols=182 Identities=22% Similarity=0.282 Sum_probs=111.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 311 (921)
|..|...+++++|.++|.++.+...... .....+..+...+.++... ++++|+.+|++++ .+|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------HHHH
Confidence 3444445555555555555443321100 1112233333333333333 6666666666654 3455
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCH
Q 002441 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGKM 384 (921)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~ 384 (921)
..|++..|- ..+..+|.+|... |++++|+++|++|+++... . ..++..+|.++...|+|
T Consensus 106 ~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 566665553 3445567777777 8888888888888876321 1 34677889999999999
Q ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002441 385 DAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 385 ~~A~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
++|++.|++.....-++ ...++..+.++...|+...|...+++....+|.........+
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999988763221 235667788999999999999999999999998766655443
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=1.4e-08 Score=108.34 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHH
Q 002441 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAA 136 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~la~~~~~~g~~~~A~ 136 (921)
+|++|..+|+++ |.+|...+++++|.+.|.++....- + -...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 556666666655 5667777788888888877765421 1 134555666666555 999999
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 002441 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (921)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 209 (921)
.+|++++.+.-.... ....+.++..+|.+|... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999887543332 233578899999999998 9999999999999987322 14567889999999999999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002441 210 ALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 210 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
|++.|+++....-++ ...++..+.+++..|+...|...+++....+|.+.
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999998753221 23556778899999999999999999999988654
No 192
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.96 E-value=1.8e-08 Score=116.14 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=117.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEE-ccCcCCcHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHM 734 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~ 734 (921)
+.++|+.+.++ .|..+.+++++.++++. +.+|+++|.+ .+...+.+++..+++| ++|.+ .+. . .+...
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~-~~~~~ 351 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D-EALAH 351 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-HHHHH
Confidence 56678888865 79999999999998874 7899998865 2345677777777775 45654 443 2 23334
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcc--------------cc--cCCHHH
Q 002441 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--------------LI--AKNEDE 797 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--------------~i--a~~~~~ 797 (921)
..|+.+|++|-|+-| +.|.+.+|||++|+|+|+ +++| |++| ++ ..|.++
T Consensus 352 ~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~~d~~~ 417 (466)
T PRK00654 352 RIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDDFNAED 417 (466)
T ss_pred HHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCCCCHHH
Confidence 678889999999988 678999999999999886 4554 3333 33 247788
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 798 YVQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 798 y~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
+.+...++.. |++.+.+++.+. +. ..|+++..++.++++|+.+..
T Consensus 418 la~~i~~~l~~~~~~~~~~~~~~~~---~~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 418 LLRALRRALELYRQPPLWRALQRQA---MA--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---hc--cCCChHHHHHHHHHHHHHHhh
Confidence 8777766654 666555555433 22 459999999999999998754
No 193
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=3.3e-08 Score=94.24 Aligned_cols=197 Identities=17% Similarity=0.117 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (921)
.+..++..|..|-..|-+.-|...|.+++.+.|+.+.++..+|..+...|+|+.|.+.|+..++++|.+..+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002441 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 315 (921)
+--|++.-|.+-+.+..+.+|+++--... .|.. ...-+..+|..-+.+-.+...+....+.... ..+|+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW---LYl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgk 212 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLW---LYLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGK 212 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHH---HHHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhh
Confidence 99999999999999999999998733221 1111 1233666666554433332222111222111 12222
Q ss_pred hHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002441 316 FDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 211 12233333322222 4566777777777777777777777766543
No 194
>PRK14098 glycogen synthase; Provisional
Probab=98.96 E-value=1.7e-08 Score=116.09 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=121.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++|+++.++ .|..+.+++++.+++. ++.+|+|+|.+ ....++.|++..+++ ++||.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356678888866 7999999999999886 48999999865 233567787777776 37999998765 45566
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhH--HHhh---cCCcccc--cCCHHHHHHHHHH--
Q 002441 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTK---VGLKHLI--AKNEDEYVQLALQ-- 804 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~--~l~~---~gl~~~i--a~~~~~y~~~a~~-- 804 (921)
..|+.+|++|-|+-+ +.|.+.+|||.+|+|+|+ +++|+- ++.. -|-..++ ..|.+++.+...+
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-------~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-------YAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-------ecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 788999999999877 779999999999987665 333300 0000 0122333 2467777666544
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002441 805 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 846 (921)
Q Consensus 805 -l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 846 (921)
+.+|++.+.+++. ..+. .-|+++..++++++.|+++.
T Consensus 450 ~~~~~~~~~~~~~~---~~~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 450 ALYHDEERWEELVL---EAME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHcCHHHHHHHHH---HHhc--CCCChHHHHHHHHHHHHHHh
Confidence 5578876666654 2332 45999999999999999875
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.96 E-value=1.6e-05 Score=91.30 Aligned_cols=201 Identities=17% Similarity=0.082 Sum_probs=134.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 129 (921)
..+.-..-....+++.+|++...+.+++.|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..+
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 33444555678899999999999999999999999999999999999999999888877777888888899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------------
Q 002441 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY-------------- 195 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------------- 195 (921)
+++++|..+|++++..+|+ .+... .+-.+|.+.+.|.+-.+.--+..+..|+++..+.
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~-------~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLY-------HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 9999999999999999998 44322 2222233333332222222222222222211111
Q ss_pred --------------------------------HHHHHHHHcCCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHHCCCH
Q 002441 196 --------------------------------NLGVVYSELMQYDTALGCYEK-AAL-ERPMYAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 196 --------------------------------~la~~~~~~g~~~~A~~~~~~-al~-~~p~~~~~~~~la~~~~~~g~~ 241 (921)
..-.++..+|++++|.+.+.. ..+ ..+.+..........+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 112334456667777777632 222 2333344444555666667777
Q ss_pred HHHHHHHHHHHHhCCCh
Q 002441 242 ESAIACYERCLAVSPNF 258 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~ 258 (921)
.+-.+...+++...+++
T Consensus 243 ~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 243 QELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 77777777777776665
No 196
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=1.9e-08 Score=92.25 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 002441 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~l 408 (921)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++..+|++ ..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777788888888888888888888777765 4677778888888888888888888888877764 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
|.++..+|++++|+.+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.92 E-value=6.1e-06 Score=85.81 Aligned_cols=296 Identities=20% Similarity=0.123 Sum_probs=188.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 200 (921)
-|.+....|+-..|.+.-.+.-++-..+.+.. +...-+......|+++.|.+.|+.++. +|.. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 35566677888999998888876555554432 233345556678999999999998875 3332 1122223333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHhhhhhhhhc
Q 002441 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~ 279 (921)
....|..+.|..+-+.+....|.-..++...-...+..|+++.|+++.+......--.. .+....+.++...+. ....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~-s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM-SLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHhc
Confidence 45689999999999999999999998888888889999999999999877654321111 111122222222111 1112
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
.+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 356677777777777777777777777777777777777777777777766642 1 22333333333333333333
Q ss_pred H---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 002441 360 A---LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 430 (921)
Q Consensus 360 a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 430 (921)
+ ..+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++..++-++++
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3 3446677777777777777777777777766666666665 44555666665544 666666666666655
No 198
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.90 E-value=3.8e-08 Score=90.31 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 121 (921)
++.++..|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
No 199
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.3e-05 Score=81.80 Aligned_cols=386 Identities=12% Similarity=0.068 Sum_probs=221.1
Q ss_pred chHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhC---CCC--
Q 002441 47 EGKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN-- 115 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~-- 115 (921)
-...++.+|+.+...| +..+++++++..+...|.+ +.....+|..++ ...+.+.|...++++..+. |+.
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567888999999999 9999999999998877764 346667776654 6789999999999998763 322
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC-
Q 002441 116 --ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHY- 190 (921)
Q Consensus 116 --~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~- 190 (921)
.++...++.+|.... .+..|...+++++++..+.+.. -...++.++.......++..|++.+.-..+. ++..
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~ 162 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF 162 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh
Confidence 356778888888877 8889999999999988776633 2445778888888888888888775321111 0000
Q ss_pred --HHHHHH--HHHHH---------------------------------------------HHcCCHHHHHHHHHHH---H
Q 002441 191 --APAYYN--LGVVY---------------------------------------------SELMQYDTALGCYEKA---A 218 (921)
Q Consensus 191 --~~~~~~--la~~~---------------------------------------------~~~g~~~~A~~~~~~a---l 218 (921)
..+.+. .+.++ ...|+...+...+++. +
T Consensus 163 ~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~si 242 (629)
T KOG2300|consen 163 PYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSI 242 (629)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 000111 11111 1123333322222222 1
Q ss_pred Hh-CCC------------CH-----------HHHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCChH-------HHHHHH
Q 002441 219 LE-RPM------------YA-----------EAYCNMGVI--YKNRGDLESAIACYERCLAVSPNFE-------IAKNNM 265 (921)
Q Consensus 219 ~~-~p~------------~~-----------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l 265 (921)
+. .+. .+ .++..+-.+ -.-.|-+++|.++-++++....+.. ......
T Consensus 243 qtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~k 322 (629)
T KOG2300|consen 243 QTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFK 322 (629)
T ss_pred hccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 10 000 00 000000000 1123455566665555554321111 011111
Q ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-
Q 002441 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C- 333 (921)
Q Consensus 266 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 333 (921)
...+..+.....-.|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.... +
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Confidence 1222233333344567777777666665442 22 2345666676667777777777777777765332 2
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 002441 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y 401 (921)
Q Consensus 334 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 401 (921)
+....++|..|.+.++-+.-.+.++ .+.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 3344567777777665443333332 233332 235566666677777777777777777776411 1
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh
Q 002441 402 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 402 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
+-.+..|+.+....|+..++.+..+-++++....++.
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 2345566777777777777777777776665444443
No 200
>PRK14099 glycogen synthase; Provisional
Probab=98.89 E-value=5.7e-08 Score=111.66 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=118.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCE-EEccCcCCcHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 734 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 734 (921)
+.++||++.++ .|..+.++++..++++ ++.+|+++|.+ .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 46778888876 7999999999998876 36899998865 3346677777776654 565 67776 34555
Q ss_pred Hhc-ccccEEecCCCC-CCcccHHHHhhcCC-cEEecCCCcccccch--hHHHhhcC-Ccccc--cCCHHHHHHHHHH--
Q 002441 735 QAY-SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMAGSVHAHNVG--VSLLTKVG-LKHLI--AKNEDEYVQLALQ-- 804 (921)
Q Consensus 735 ~~~-~~~D~~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~g~~~~~r~~--~~~l~~~g-l~~~i--a~~~~~y~~~a~~-- 804 (921)
..| ..+|++|-|+-| +.|.+.+|||++|+ ||||-.|..- .-+. .......| -..++ ..|.+++.+...+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 555 569999999977 77999999999995 5554332210 0000 00000001 12333 2477777776654
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 805 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 805 -l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
+.+|++.+.++++..+ ..-|+++..+++++++|+++..
T Consensus 443 ~l~~d~~~~~~l~~~~~-----~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGM-----TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHh
Confidence 7889988777776543 2359999999999999999875
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.7e-08 Score=99.77 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002441 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~ 392 (921)
.++.+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566667777788889999999999999999999999999999999999999999999988877643 4678889999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
+++..+|++..+.+.||..++..|++.+|+..++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999998887643
No 202
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.88 E-value=3.9e-08 Score=113.90 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=119.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+.++++++.++ .|..+.+++++.++.+. +.+|+++|.+. +...+.+++...+.+ +++.|.+... .+....
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~--~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGD--PELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCC--HHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 56778888866 89999999999998864 58999998652 345666766666553 5788776654 344556
Q ss_pred hcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHHH
Q 002441 736 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDEY 798 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------------a~~~~~y 798 (921)
.|+.+|++|-|+-+ +.|.+.+|||++|+|||+ +++| |++|.| ..|.+++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~g-------g~~e~v~~~~~~~~~~~G~l~~~~d~~~l 427 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTG-------GLADTVVDGDPEAESGTGFLFEEYDPGAL 427 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCC-------CccceEecCCCCCCCCceEEeCCCCHHHH
Confidence 78899999999987 668899999999999997 5555 443332 2477888
Q ss_pred HHHHHHHhc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 799 VQLALQLAS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 799 ~~~a~~l~~----d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.+...++.. |++.+.+++.+.. ...|+++..++.+++.|++
T Consensus 428 a~~i~~~l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 428 LAALSRALRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHh
Confidence 777666665 8877777765442 2359999999999999975
No 203
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.88 E-value=3.2e-08 Score=110.14 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=102.7
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcc
Q 002441 659 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 738 (921)
Q Consensus 659 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 738 (921)
.++|..--...|..+.+++++.+ .| .+|+++|.+ ...+.+++ ++. ++|.|+|.++ .++....|.
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~~-~~V~~~g~~~-~~~~~~~~~ 260 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KAG-PNVTFLGRVS-DEELRDLYA 260 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hcC-CCEEEecCCC-HHHHHHHHH
Confidence 34444333457888888887765 45 789998865 33344443 444 8999999987 578889999
Q ss_pred cccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHH
Q 002441 739 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 739 ~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.||+++-|...+.|.+.+|||+||+|||+........ ++.. |-..++ ..|.+++.+....+.+|++ .++
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e-----~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~ 331 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALE-----TVID-GVTGILFEEQTVESLAAAVERFEKNED---FDP 331 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcc-----eeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcc---cCH
Confidence 9999998887777899999999999999843211111 1111 222333 3678899999999999984 334
Q ss_pred HHHHHHhhcCCCCChHHHHHHH
Q 002441 817 MSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 817 ~~~~~~~~~~~l~~~~~~~~~~ 838 (921)
+.++++. ..|+.+.|.+++
T Consensus 332 ~~~~~~~---~~~~~~~~~~~~ 350 (351)
T cd03804 332 QAIRAHA---ERFSESRFREKI 350 (351)
T ss_pred HHHHHHH---HhcCHHHHHHHh
Confidence 4444442 237788887765
No 204
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.88 E-value=6.8e-08 Score=110.39 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=107.7
Q ss_pred EEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CCEEEccCcC
Q 002441 662 FGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLIL 728 (921)
Q Consensus 662 f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~~~~~~~~~~gi~~------------~rv~~~~~~~ 728 (921)
+.+..+..|-...++++|.++++..|+.+|+|+|.+ +.+ ..+.+.+++.|+.. .+|.+.+.
T Consensus 236 il~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~-- 309 (425)
T PRK05749 236 WIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT-- 309 (425)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--
Confidence 333445566667789999999988999999999865 344 67888889999851 12333222
Q ss_pred CcHHHHHhcccccEE-ec-CCCCCCcccHHHHhhcCCcEEecCCCcccccchh--HHHhhcCCcccccCCHHHHHHHHHH
Q 002441 729 LNHDHMQAYSLMDIS-LD-TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQ 804 (921)
Q Consensus 729 ~~~~~~~~~~~~D~~-Ld-~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~~~~~y~~~a~~ 804 (921)
..+....|+.|||+ +- |+.-+||.+.+|||++|+|||+-+- . +.++. ..+...|. -+...|.+++.+....
T Consensus 310 -~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~-~~~~e~~~~~~~~g~-~~~~~d~~~La~~l~~ 384 (425)
T PRK05749 310 -MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--T-FNFKEIFERLLQAGA-AIQVEDAEDLAKAVTY 384 (425)
T ss_pred -HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--c-cCHHHHHHHHHHCCC-eEEECCHHHHHHHHHH
Confidence 35778888999995 43 3334788899999999999997221 1 11111 12222231 1125799999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcC
Q 002441 805 LASDVTALANLRMSLRDLMSKS 826 (921)
Q Consensus 805 l~~d~~~~~~~r~~~~~~~~~~ 826 (921)
|.+|++.+.++++..++.+...
T Consensus 385 ll~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred HhcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998877543
No 205
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.88 E-value=6.6e-08 Score=108.80 Aligned_cols=261 Identities=11% Similarity=0.113 Sum_probs=145.7
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCC--CceEEee---ccCCCCCCCCCccEEEecCCCCCCCccc------
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTW---IGYPNTTGLPTIDYRITDSLADPPETKQ------ 624 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~--APvQ~~~---~G~p~ttG~~~~Dy~i~d~~~~p~~~~~------ 624 (921)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++ .|.+...-.+.+|.+++-. ++...
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~-~~~td~~~~~~~~~~~ad~i~~~s----~~~~~~l~~~g 166 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTY-NVLTDFCLHKIWVHREVDRYFVAT----DHVKKVLVDIG 166 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeE-EEeCCCCCCcccccCCCCEEEECC----HHHHHHHHHcC
Confidence 5677889999999999532221 1111222222 3432 22 2333333345677766431 11111
Q ss_pred CcccceEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 002441 625 KHVEELIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 625 ~~~e~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
.-.|++...+..-. .|.+.......+...++++ ..+++....+. .|.-..+++.+ ...|+.++++++++ .
T Consensus 167 i~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~ 240 (380)
T PRK13609 167 VPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--N 240 (380)
T ss_pred CChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--C
Confidence 12245554432110 1111111001112234443 33333332332 34444444443 34588888877542 2
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC-CCcccccchh
Q 002441 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGV 779 (921)
Q Consensus 701 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~ 779 (921)
+..++.+++.....+ ++|.|+|.+.. ....|..+|+++. -+||.|.+|||++|+|||+.. .... ....+
T Consensus 241 ~~~~~~l~~~~~~~~---~~v~~~g~~~~---~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~-~~~n~ 310 (380)
T PRK13609 241 EALKQSLEDLQETNP---DALKVFGYVEN---IDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQ-EKENA 310 (380)
T ss_pred HHHHHHHHHHHhcCC---CcEEEEechhh---HHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCc-chHHH
Confidence 346677777666655 68999998653 3455666999983 357889999999999999842 1111 11222
Q ss_pred HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 780 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 780 ~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
.++...|.. ++..|.++..+...+|.+|++.++++++..++.. .-++.+.+++.+++.+.
T Consensus 311 ~~~~~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 311 MYFERKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred HHHHhCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 344444543 3468999999999999999999999998887642 22577888777776653
No 206
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=4.9e-08 Score=95.74 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=102.3
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 002441 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~ 133 (921)
+-.+.|..+...+.+.++..+.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44455777777777766665554 5678999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002441 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (921)
+|+..+++++.+.|.....+..++.++..+|..+...|++++|+..+.+
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999999999999988888888888888888888887765554433
No 207
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=1.2e-06 Score=104.03 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002441 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
+..+-|++.+..+|+..-.|...-....+.++.++|.+..++||. +++...+-..++-.+|.++-..| |.-+...+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHH
Confidence 345566777777788777787777777888888888888888875 34555555555556666655444 34555666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 002441 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN- 366 (921)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 366 (921)
.|++|.+... -..++..|..+|...+++++|.++|+..++...+....|..++..++++++-++|...+++|++.-|.
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 7777766542 24567778888888888888888888888887777888888888888888888888888888888776
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 367 -FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 367 -~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+.+.....|.+-++.|+.+.+..+|+-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.=.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 67788888888888888888888888888888888888888888888888888888888888876543
No 208
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.87 E-value=4.4e-08 Score=110.10 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=123.5
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 655 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 655 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
...+.++|+.+.+. .|..+.+++++.++... |+.+|++.|.+ .....+.+.....++ ++|.|.|.++ .++
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 34556667777755 78889999999999887 99999999865 234455555555565 5799999766 578
Q ss_pred HHHhcccccEEecCCCCCC------cccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc-CCHHHHHHHHHHH
Q 002441 733 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 805 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g------~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-~~~~~y~~~a~~l 805 (921)
....|..+|+++-|....+ +++.+|||++|+|||+-....... ++...+..-++. .|.++.++....+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~-----~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE-----LVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh-----hhccCCcceEeCCCCHHHHHHHHHHH
Confidence 8899999999998886643 445899999999999854332221 111112222333 3899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002441 806 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 838 (921)
..|++.+..+++..++..... |+++.++..+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEK--FSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHh--hcHHHHHHhc
Confidence 999999999999888776433 7888877654
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.87 E-value=8.1e-06 Score=83.98 Aligned_cols=228 Identities=32% Similarity=0.454 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 002441 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY 207 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~ 207 (921)
+.+..+...+...+...+.. .........+..+...+.+..+...+...+. ..+.....+...+..+...+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 44444445555544444432 0011234444555555666666666665554 4555556666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002441 208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
..++..+.+++...+.........+. ++...|++++|...+++++...+. ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~----------------------- 164 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----LN----------------------- 164 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cc-----------------------
Confidence 66666666666655554344444444 566666666666666666554432 00
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
.....+...+..+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus 165 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 165 -----------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred -----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 11222222222244444444444444444444444 344555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
.....+..++..+...+.++++...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 54444455555544444555555555555555554
No 210
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.87 E-value=1.3e-07 Score=106.14 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=148.9
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchh--hhh-c-----CCCceEEeecc-C---CCCCCCCCccEEEecCCCCCCCcc
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIG-Y---PNTTGLPTIDYRITDSLADPPETK 623 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~--~~a-~-----r~APvQ~~~~G-~---p~ttG~~~~Dy~i~d~~~~p~~~~ 623 (921)
..+.+.|++.++||+|-. |.-.++.+ ++. + ...|+= +.+. + ....-.+.+|++++-.-..-....
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~-~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~ 166 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFT-TVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRAL 166 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEE-EEECCCCCcCcccccCCCCEEEECCHHHHHHHH
Confidence 467889999999999973 44433322 222 1 245653 2221 1 112335678888852210000001
Q ss_pred --cCcccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHh----HcCCcEEE-
Q 002441 624 --QKHVEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSRLV- 692 (921)
Q Consensus 624 --~~~~e~~~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~----~~p~~~l~- 692 (921)
..-.+++...|..- -.|.++. .....+...+++++..+++.+.+. .|....+++.+..++. ..|+.+++
T Consensus 167 ~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~v 246 (382)
T PLN02605 167 KRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVV 246 (382)
T ss_pred HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEE
Confidence 11125565554221 0121111 111112234566666666666653 6777788888776552 13666644
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCc
Q 002441 693 VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV 772 (921)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~ 772 (921)
+.|.+ +..++.+.+ .... .+|.|+|.+.. ....|..+|+++-+ +||.|++|||++|+|||+..--.
T Consensus 247 i~G~~---~~~~~~L~~----~~~~-~~v~~~G~~~~---~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 247 ICGRN---KKLQSKLES----RDWK-IPVKVRGFVTN---MEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred EECCC---HHHHHHHHh----hccc-CCeEEEecccc---HHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCC
Confidence 44433 234444443 3322 57999999764 44455669999953 47789999999999999854111
Q ss_pred ccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002441 773 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 773 ~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~ 840 (921)
......+-.+...|..- +..|.++..+...+|..| ++.+++|++..++... -......+..+.+
T Consensus 313 gqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~ 377 (382)
T PLN02605 313 GQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHE 377 (382)
T ss_pred ccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 11112334444456543 458999999999999988 9999999988887632 2234555555543
No 211
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=3e-08 Score=86.10 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777788888888888888777777777778888888888888888888888888777777888888888888
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 002441 416 GSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P~ 434 (921)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777663
No 212
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1.1e-08 Score=83.65 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 002441 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (921)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~P 433 (921)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777777777777777777777777777 57777777777777666
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.85 E-value=5.1e-06 Score=85.49 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHhhhhhhhhc
Q 002441 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~lg~~~~~~ 279 (921)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 45566666666666666655 356677777777777777777777777765 333333 2333444444445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (921)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 355 (921)
+++.+++..+.+++...+.........+. ++...+++++|...+++++...+ .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 56777888888877766665555555555 89999999999999999988776 456677777777889999999999
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 356 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...++++++...+.++++..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 79999999999999999999999999999999997888888888888888899999999999999998
No 214
>PHA01633 putative glycosyl transferase group 1
Probab=98.85 E-value=6.9e-08 Score=103.83 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=75.9
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEcc---CcCC
Q 002441 659 FITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LILL 729 (921)
Q Consensus 659 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~---~~~~ 729 (921)
.++|+++.++ .|..+.++++|.++.++.|+ .+|++.|. ..+.++++. ++|.|.+ .++
T Consensus 148 ~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~------------~~~~~l~l~-~~V~f~g~~G~~~- 213 (335)
T PHA01633 148 TIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH------------KQFTQLEVP-ANVHFVAEFGHNS- 213 (335)
T ss_pred CeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH------------HHHHHcCCC-CcEEEEecCCCCC-
Confidence 3567777764 99999999999999988886 46776652 123556775 8999985 433
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEec
Q 002441 730 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 730 ~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~ 768 (921)
.++....|..+|++|-|+-+ +.|.+.+|||+||+|||+-
T Consensus 214 ~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 214 REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 46778899999999998866 7799999999999999983
No 215
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.84 E-value=7e-08 Score=94.66 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 410 (921)
...++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|+.++++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344555555555555555555555555544331 2345555555555555555555555555555555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHhhcCCCChhh
Q 002441 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~l~P~~~~a 438 (921)
++. .+|+++ +|+.+|++++..+|++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 554 445544 6666777778888876543
No 216
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.83 E-value=1.3e-07 Score=106.24 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=111.8
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002441 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~ 748 (921)
.|....+++.+ ++..|+.+++++++. .+..++.+.+.+ +.. ++|.|.|.+. +....|..+|+++-.
T Consensus 215 ~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~~-~~v~~~G~~~---~~~~~~~~aDl~I~k-- 280 (391)
T PRK13608 215 SKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KSN-ENVLILGYTK---HMNEWMASSQLMITK-- 280 (391)
T ss_pred chhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---ccC-CCeEEEeccc---hHHHHHHhhhEEEeC--
Confidence 35555666554 445578888776542 123445555433 333 5899999864 344556669999842
Q ss_pred CCCcccHHHHhhcCCcEEecC-CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 002441 749 YAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSP 827 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~ 827 (921)
+||.|+.|||++|+|||+.. ... .....+-++...|.. +++.|.++..+....|.+|++.+.++++..++.. .
T Consensus 281 -~gg~tl~EA~a~G~PvI~~~~~pg-qe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~ 354 (391)
T PRK13608 281 -PGGITISEGLARCIPMIFLNPAPG-QELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNEQLTNMISTMEQDK---I 354 (391)
T ss_pred -CchHHHHHHHHhCCCEEECCCCCC-cchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---C
Confidence 57889999999999999863 221 234455666776775 4467999999999999999999999999998763 3
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 002441 828 VCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 828 l~~~~~~~~~~e~~~~~~~~~ 848 (921)
-++....+..+++.+..+-++
T Consensus 355 ~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 355 KYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred CCCHHHHHHHHHHHhhhhhhh
Confidence 378889999888887655443
No 217
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3.9e-07 Score=87.14 Aligned_cols=198 Identities=17% Similarity=0.123 Sum_probs=147.3
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
..+..+++.|..|-..|-..-|..-|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|..-.+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (921)
++--|++.-|.+.+.+..+.+|+++--.. |..+ -...-+..+|...+.+-.+...+.-..|+..+. .+|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-----WLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL-----WLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH-----HHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHh
Confidence 99999999999999999999998874311 1111 123346677766654433332222222322222 222
Q ss_pred CHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002441 206 QYDTALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
+..+ ...++++.....+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 1233333332222 25689999999999999999999999988654
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.2e-07 Score=96.81 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 002441 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 357 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 357 (921)
+.++.+.-++..+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 56777888889999999999999999999999999999999999999999999999999999988654 578999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002441 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (921)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 402 (921)
+++++.+|.+..+.+.||..+++.|+|.+|...++..+...|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
No 219
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=1.1e-07 Score=93.57 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002441 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (921)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 374 (921)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776543 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002441 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 375 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
|.++...|+...+...+++++. .+++|++++++++.++|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665543 26788899999999998873
No 220
>PHA01630 putative group 1 glycosyl transferase
Probab=98.81 E-value=7.4e-08 Score=104.93 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=107.6
Q ss_pred eEEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002441 660 ITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 660 ~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
++++... ...|..+.++++|..+.+..|+.+|+++|.+.. ..++ .++. . +.+.++ ..+....|
T Consensus 143 ~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~----~~~l------~~~~-~---~~~~v~-~~~l~~~y 207 (331)
T PHA01630 143 CVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML----DPRL------FGLN-G---VKTPLP-DDDIYSLF 207 (331)
T ss_pred EEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc----chhh------cccc-c---eeccCC-HHHHHHHH
Confidence 3444433 358999999999999999889999999985421 1111 1332 1 223344 47788888
Q ss_pred ccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh--HHHhh--------------------cCCcccccCC
Q 002441 738 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK--------------------VGLKHLIAKN 794 (921)
Q Consensus 738 ~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~--------------------~gl~~~ia~~ 794 (921)
..|||++-|+-+ +.|.+.+|||++|+|||+ +++|+ .++.. -+..-++..|
T Consensus 208 ~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIa-------s~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~ 280 (331)
T PHA01630 208 AGCDILFYPVRGGAFEIPVIEALALGLDVVV-------TEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPD 280 (331)
T ss_pred HhCCEEEECCccccCChHHHHHHHcCCCEEE-------eCCCCchhhccCCCceEEeeecccccccccCCcccccccCCC
Confidence 999999998877 569999999999999998 44431 01110 0112234457
Q ss_pred HHHHHHHHHHHhcCH---HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 795 EDEYVQLALQLASDV---TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 795 ~~~y~~~a~~l~~d~---~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
.++..+.++.+..|+ +.++.++...+.. ..-|+++..+..+++.|++
T Consensus 281 ~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~---~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 281 IEDAYQKLLEALANWTPEKKKENLEGRAILY---RENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhc
Confidence 788888888888873 4444444443332 2349999999999999964
No 221
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.81 E-value=2.8e-09 Score=107.92 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 129 (921)
.+-..|+.|+++|+|++|+.+|.+.+..+|.++..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 130 GRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
|+..+|.+.++.++++.|++.+....++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999999776544333
No 222
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=1.5e-06 Score=103.22 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHCCCHHHHHHH
Q 002441 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 247 (921)
-.+..+-|++.+..+|+....|..+.....+.++.++|.+..++|+.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888899999999999999999999999999999999874 3322 33454444555555777788889
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002441 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
|++|.+..... .++..|..+|...+++++|.++++..++...+...+|..++..++..++-++|...+++|+
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99998775432 3566777788888999999999999999998889999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002441 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 328 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 398 (921)
+.-|. +.+.....|.+-++.|+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99887 788889999999999999999999999999999999999999999999999999999999999874
No 223
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.80 E-value=7.5e-08 Score=108.31 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=102.1
Q ss_pred CCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002441 658 GFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 658 ~~~~f~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
+..+++.+.+ ..|..+.+++++..+ .++.+|+++|.+.. .. .++|.+.|...+..+.
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~----~~------------~~~v~~~g~~~~~~~l 300 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP----FT------------AGNVVNHGFETDKRKL 300 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc----cc------------ccceEEecCcCCHHHH
Confidence 3334555554 236667788877764 36789999986421 00 2568888877666788
Q ss_pred HHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---------CCHHHHHHHHH
Q 002441 734 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---------KNEDEYVQLAL 803 (921)
Q Consensus 734 ~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---------~~~~~y~~~a~ 803 (921)
...|+.+|||+-|+-+ +.++|.+|||+||+|||+ +++| |++|+|. .|.++..+
T Consensus 301 ~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~--- 363 (405)
T PRK10125 301 MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ--- 363 (405)
T ss_pred HHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh---
Confidence 8999999999988877 889999999999999998 8888 6665552 35555543
Q ss_pred HHhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 804 QLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 804 ~l~~d~~~~~~-~r---~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
+.|++.+.+ ++ ...|++.. ..|+.+.+++++++.|++
T Consensus 364 --~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 364 --LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred --ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Confidence 245544433 22 33444443 349999999999999975
No 224
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=2.6e-08 Score=81.43 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002441 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p 399 (921)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 225
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.78 E-value=2.3e-07 Score=106.28 Aligned_cols=142 Identities=22% Similarity=0.201 Sum_probs=118.0
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 002441 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (921)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 361 (921)
..|.+..+| +..|.-+...++ ..+|+.+|+++++++|+++.++..++.++.... +..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555554 445555555444 789999999999999999999998888775542 3456667777766
Q ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChh
Q 002441 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (921)
Q Consensus 362 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 437 (921)
.+ ++..+.++..+|..+...|++++|...++++++++|+ ..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 6777889999999999999999999999999999994 889999999999999999999999999999999885
No 226
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=7.8e-08 Score=83.45 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 129 (921)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.|+++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002441 130 GRLVEAAESYHKALSADPS 148 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (921)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 227
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=3.5e-07 Score=87.15 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=94.2
Q ss_pred HcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 002441 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (921)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 385 (921)
..++...+...+++.....|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888877 5667788888899999999999999988877554 347788899999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002441 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 386 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99998866 23334446778889999999999999999998875
No 228
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=3.4e-07 Score=95.29 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHH
Q 002441 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (921)
Q Consensus 46 ~~~~~~l~~A~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a 118 (921)
.+....+..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567888888876 66899999999999999999998 589999999999999999999999999998887 4789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002441 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
No 229
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.77 E-value=1.4e-08 Score=95.78 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=86.2
Q ss_pred CeEEEecCCC--CcCCHHHHH-HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 659 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.++||.+++. .|-...+++ +|.++.++.|+.+|.+.|... + ++.+. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678888866 477788999 999999999999999988642 1 23222 23699999997 47899
Q ss_pred hcccccEEecCCCCC--CcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC
Q 002441 736 AYSLMDISLDTFPYA--GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 808 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~--g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d 808 (921)
.++.|||+|.|+..+ .+++++|+|++|+|||+... . ...+....|..-++..|.+++++...+|.+|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-G-----AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-H-----CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-c-----hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 999999999998653 45799999999999998443 1 1223333455667789999999999999876
No 230
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=3.3e-07 Score=90.18 Aligned_cols=93 Identities=29% Similarity=0.441 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (921)
+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345666666666666666666666666554432 3456666666666666666666666666666666666666666
Q ss_pred HHHHCCCHHHHHHHHH
Q 002441 234 IYKNRGDLESAIACYE 249 (921)
Q Consensus 234 ~~~~~g~~~~A~~~~~ 249 (921)
++...|+...+...++
T Consensus 115 ~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 115 IYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHcCChHhHhhCHH
Confidence 6666665555444333
No 231
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4.1e-06 Score=83.21 Aligned_cols=167 Identities=14% Similarity=0.042 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 002441 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (921)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 271 (921)
.....-|.+|...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.++..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence 44555677888889999998887763 345666666778888889999999999988876653 44456666666
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (921)
Q Consensus 272 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 351 (921)
++. ..+++.+|.-+|++.-+..+..+.....++.+...++++++|...++.++..++++++.+.++..+-...|...
T Consensus 182 la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 182 LAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred Hhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 542 23457777778887777677777777777778888888888888888888777777777777777777777665
Q ss_pred HHHH-HHHHHHhhCCCCH
Q 002441 352 KAVE-CYQMALSIKPNFS 368 (921)
Q Consensus 352 ~A~~-~~~~al~~~p~~~ 368 (921)
++.. ++.+....+|+++
T Consensus 259 ~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 259 EVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHhcCCcch
Confidence 5443 4444444556543
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.74 E-value=3e-06 Score=84.80 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=135.6
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---H
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (921)
....+..|+..|...++.|+|++|+..|+++....|.+ ..+.+.++.++++.+++++|+..+++.+++.|.++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 34578999999999999999999999999999988875 47899999999999999999999999999988764 4
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002441 118 AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (921)
Q Consensus 118 a~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (921)
+++..|.+++.. .-..+|...|+..+...|++.-+...... +..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~------------------i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR------------------IVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH------------------HHHHHHHH-----
Confidence 677777776643 23456888889999999987543211111 11111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002441 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-+-...|+.
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223455677777777777777777777765543 4566667777777777777765544333333443
No 233
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=0.00013 Score=78.19 Aligned_cols=348 Identities=11% Similarity=0.039 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002441 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
+.++..+|..+...| +..+++++++..+...|.+ +.....+|.++ ....+++.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356788888888899 8999999999999887764 45677788654 56789999999999998876554444444
Q ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 002441 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (921)
Q Consensus 156 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~ 226 (921)
.-..+..++.++.... .+..|...+++++++....+ ...+.++.++.-..++..|++.+.--.+.... +..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4555667777777766 88999999999999976654 45678899999999999999885432111100 111
Q ss_pred HHHHHH--HHHHHCCCHH---HHHHHHHHHHHhCCChHHHHHHHHHHH--------------------------------
Q 002441 227 AYCNMG--VIYKNRGDLE---SAIACYERCLAVSPNFEIAKNNMAIAL-------------------------------- 269 (921)
Q Consensus 227 ~~~~la--~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~-------------------------------- 269 (921)
+.+.+. .++...-+.. .+.....+..+....++.....+-..|
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 111111 1111111211 112222222211111111100000000
Q ss_pred --------------------------------HhhhhhhhhcCCHHHHHHHHHHHHHhCCC------CH--------HHH
Q 002441 270 --------------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (921)
Q Consensus 270 --------------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~--------~~~ 303 (921)
...-.--...|-+++|.++-++++..... .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 00000011235566666666666644211 11 123
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHH
Q 002441 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 370 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~ 370 (921)
-.+..+-.-.|++.+|++....+.+. .|. .+.+.+.+|.....-+.++.|...|..|.++-.. + +-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44555666778888888777766654 333 2456667777777778888888888888876433 2 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
..++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||....++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 56788888887765544433332 34432 3567778888888999999999999988876
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.7e-07 Score=97.47 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
++.|++.++.++++|.+|+..++++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666666666666666666665555443
No 235
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.1e-05 Score=90.72 Aligned_cols=185 Identities=18% Similarity=0.163 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 002441 49 KDALSYANILRSRNKFVDALALY------------EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (921)
..|-.+|....+..+.+-|.-++ +++.+ +|++ .-...|.....+|..++|+.+|++.-+.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 45666777777766666655443 33322 3432 3334566677899999999999887543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH----------Hhh
Q 002441 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKI 186 (921)
Q Consensus 117 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~ 186 (921)
-.+-.+|...|.+++|.+.-+.--++. +-..|++.+..+...++.+.|+++|+++ +..
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 345567888888888887765432222 2334777788888888888888888764 222
Q ss_pred CC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHH
Q 002441 187 DP----------HYAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIY 235 (921)
Q Consensus 187 ~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~la~~~ 235 (921)
+| .+...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 33 2456677778888999999999999988743 2234567889999999
Q ss_pred HHCCCHHHHHHHHHHHHH
Q 002441 236 KNRGDLESAIACYERCLA 253 (921)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (921)
...|+..+|+..|.++-.
T Consensus 978 En~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999887643
No 236
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.72 E-value=1.8e-07 Score=108.79 Aligned_cols=160 Identities=17% Similarity=0.092 Sum_probs=115.4
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
++.++++.+.++ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+.+...+. .++|.|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 456668887766 78899999999988864 3889998865 334556666666555 47888766554 34445
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002441 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 797 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------------a~~~~~ 797 (921)
..|..+||+|-|+-+ +.|.+.+|||++|+|||+ +++| |++|+| ..|.++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------~~~g-------g~~e~v~~~~~~~~~~~G~~~~~~~~~~ 431 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-------RATG-------GLADTVIDYNEDTGEGTGFVFEGYNADA 431 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-------CcCC-------CccceEeCCcCCCCCCCeEEeCCCCHHH
Confidence 678889999999877 678899999999999997 5555 433332 246777
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 798 YVQLALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 798 y~~~a~~l~---~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
+.+...++. .+++.+.+++++..+ ..|+++..++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 777666655 466666665554432 24999999999999986
No 237
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=3.6e-08 Score=84.09 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 137 (921)
.+|+|++|+..|+++++.+|. +...++.+|.|++..|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 002441 138 SYHKA 142 (921)
Q Consensus 138 ~~~~a 142 (921)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 238
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.71 E-value=0.00098 Score=72.81 Aligned_cols=414 Identities=12% Similarity=0.049 Sum_probs=264.1
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH-
Q 002441 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT- 120 (921)
Q Consensus 42 ~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~- 120 (921)
...+.+.+.|..+.+.+..+ .++++...|++.+...|..+.+|.......+...+|+.-..+|.+++..--+ .+.|.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHH
Confidence 45677999999999988877 9999999999999999999999999999999999999999999999865332 44443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----Hh---cCCCChHhHHHHHHHHH---HHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002441 121 HCGILYKDEGRLVEAAESYHKA----LS---ADPSYKPAAECLAIVLT---DLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~~~~~la~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (921)
.+..+....++...+.+..-++ +. .++.....|......+. ..|. +..+.+.+.-...|++++..--.+
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCcccc
Confidence 2334444455555444333333 32 23333333322221111 1122 223336667777888887653333
Q ss_pred HH-HHHHH-----------H--HHHHHcCCHHHHHHHHHHHHHh-------CCC----C-------HHHHHHHHHHHHHC
Q 002441 191 AP-AYYNL-----------G--VVYSELMQYDTALGCYEKAALE-------RPM----Y-------AEAYCNMGVIYKNR 238 (921)
Q Consensus 191 ~~-~~~~l-----------a--~~~~~~g~~~~A~~~~~~al~~-------~p~----~-------~~~~~~la~~~~~~ 238 (921)
.+ .|... | .+-.....|..|...+++.... .|. . .+.|.++...-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 21 11111 1 1222334566677766665432 111 0 12333333222211
Q ss_pred C------C--HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCC-------HHHHHHHHHHHHHhCC-CCHHH
Q 002441 239 G------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNW-HYADA 302 (921)
Q Consensus 239 g------~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~~-~~~~~ 302 (921)
+ . -..-.-.|++++...+-.++.|+..+..+...++++...|+ .+++..+|++++.... .+...
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11233457888888888888888888888887777766665 4667777777775432 23344
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-
Q 002441 303 MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV- 377 (921)
Q Consensus 303 ~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 377 (921)
++.++..-...-+ ++.....+++++.+...+ .-++..+-..-.+..-.+.|...|.+|-+..-....++..-|.+
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 5555544433333 677778888888764333 44666666777777788999999999987654444455444443
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChhhHhhHHHHhhhccCCChH
Q 002441 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDD 455 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~l~a~~~~~~~~~~ 455 (921)
|...++.+-|.+.|+-.++..++.+..-......+..+++-..|...|++++.- .|+-..-.+++.+..- ..-|+..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGdL~ 489 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGDLN 489 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-HhcccHH
Confidence 566899999999999999999999999999999999999999999999999987 5554433444433221 1235544
Q ss_pred HHHH
Q 002441 456 KLFE 459 (921)
Q Consensus 456 ~~~~ 459 (921)
..++
T Consensus 490 si~~ 493 (656)
T KOG1914|consen 490 SILK 493 (656)
T ss_pred HHHH
Confidence 4443
No 239
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=7.3e-07 Score=84.92 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 002441 53 SYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILY 126 (921)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~ 126 (921)
..+......++..++...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443 2333344444444444444444444444433222 12333444444
Q ss_pred HHcCCHHHHHHHH
Q 002441 127 KDEGRLVEAAESY 139 (921)
Q Consensus 127 ~~~g~~~~A~~~~ 139 (921)
...|++++|+..+
T Consensus 96 ~~~~~~d~Al~~L 108 (145)
T PF09976_consen 96 LQQGQYDEALATL 108 (145)
T ss_pred HHcCCHHHHHHHH
Confidence 4444444444444
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.70 E-value=4.7e-05 Score=79.43 Aligned_cols=271 Identities=17% Similarity=0.081 Sum_probs=163.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
++-..+..|+..+-.|+|++|.+-|+.++. +|+.- --+..+-......|..+.|..+.+.+-...|.-+.++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 455666678888999999999999999875 34321 1222233334578999999999999999999999999888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChH-hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKP-AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
.+..|+++.|+++.+......--... +....+.++...+.... ..
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-da--------------------------------- 243 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DA--------------------------------- 243 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cC---------------------------------
Confidence 99999999999998876543211111 11111222221111111 12
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHH
Q 002441 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~ 284 (921)
+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|... ++..|... ..| +.
T Consensus 244 -dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r~g--dt 310 (531)
T COG3898 244 -DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----RSG--DT 310 (531)
T ss_pred -ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----cCC--Cc
Confidence 234455555555556666555555556666666666666666666665555422 11111110 011 11
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002441 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
++.-+++ .++...+.|++.+.....+...+..|++..|..--+.+....
T Consensus 311 a~dRlkR-------------------------------a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 311 ALDRLKR-------------------------------AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHH-------------------------------HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 1111111 122233456666666666677777777777777777777776
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002441 365 PNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (921)
Q Consensus 365 p~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~ 397 (921)
|. ..++..|+.+-... |+-.++..++.++++.
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 65 34566667766554 8888888888888765
No 241
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.69 E-value=6.1e-08 Score=78.08 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 002441 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (921)
Q Consensus 52 l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (921)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777777777777777777777777777777777777777777777777777777777664
No 242
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=4.3e-08 Score=83.58 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777777764 344566677777777777777777777 666666667777777777777777777777
Q ss_pred HHHH
Q 002441 425 YEQC 428 (921)
Q Consensus 425 ~~~a 428 (921)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7664
No 243
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.69 E-value=5.2e-08 Score=78.49 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002441 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 373 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.+|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666667666666777777766776666666653
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=9.4e-07 Score=89.30 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 120 (921)
+++..+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|+|++|...|..+++..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45669999999999999999999999999999986 5899999999999999999999999999987765 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002441 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
.+|.+...+|+.++|...|+++++..|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=2.3e-07 Score=86.65 Aligned_cols=106 Identities=9% Similarity=0.031 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (921)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 409 (921)
.++..+..+..|.-++..|++++|...|+-..-.+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445666677777777777777777777777777777777777777777778888888888777777777777777788
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002441 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.||..+|+.++|+.+|+.+++ .|.+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 888888888888888777777 34443
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.68 E-value=0.0011 Score=71.12 Aligned_cols=373 Identities=14% Similarity=0.039 Sum_probs=211.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 125 (921)
+...|..+.+++++.+|.++|.++.+...+.+ +.+.++-...+-+++.+.-...+-..-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678899999999999999999987655443 4455555556667777777777777777788888888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhH------HHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHhhC-C----CCHH
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAA------ECLAIV--LTDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~-p----~~~~ 192 (921)
.++.+++.+|++.+....+.-......+ ...... -...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 9999999999999887765522222111 111111 1235778889999999999999887652 1 2333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHH-------HHh--------CCCC---------------------HHHH
Q 002441 193 AYY----NLGVVYSE----LMQYDTALGCYEKA-------ALE--------RPMY---------------------AEAY 228 (921)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~a-------l~~--------~p~~---------------------~~~~ 228 (921)
.|. .+|..|.- ...++-+.++|+.+ -.. .|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444431 12222222222222 111 1110 0111
Q ss_pred HHHHHHHH--------------HCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHH
Q 002441 229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (921)
Q Consensus 229 ~~la~~~~--------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~ 294 (921)
.+..+.|. -..+.+++....+..... +.......+...+..+-....++++..+|.+++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11111000 011223333322222211 11112222222222222333445566666666655544
Q ss_pred hCCCCH-----------------------------------------------HHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 002441 295 YNWHYA-----------------------------------------------DAMYNLGVAYGEMLK-FDMAIVFYELA 326 (921)
Q Consensus 295 ~~~~~~-----------------------------------------------~~~~~la~~~~~~g~-~~~A~~~~~~a 326 (921)
++|+.. ..+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 444322 112333444555565 67777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh---------CC---CCHHHHHHHHH--HHHHcCCHHHHHHH
Q 002441 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNLGV--VYTVQGKMDAAAEM 390 (921)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~la~--~~~~~g~~~~A~~~ 390 (921)
++..+.+.+.-+..-.. -...|.+|+. .+-+.+++ .| .+.+.-+.|+. .++.+|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77777665433322111 1112222221 11111111 11 23444444544 46779999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
-.-..+..| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888899999 7999999999999999999999988753
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=98.67 E-value=1.3e-06 Score=94.78 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=88.1
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHhhhhhh--hhcCCHHHHHHHHHHHHHhCCCCH
Q 002441 229 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 229 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
+..|......+ ..+.|+.+|.+++ +++|++..++..++.++......- .......+|....++++++++.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 56666665554 3567888999999 999999988888888776642211 123445555666666666666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002441 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 367 (921)
.++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 6666666666555556666666666666666666666666666655666666666666666655554
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=98.66 E-value=5e-07 Score=84.41 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=98.8
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.+..-+..+..|..++..|++++|..+|+-+...+|.+.+.++.+|.|+..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
.|++..|+.++|+.+|+.++. .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999998 3443
No 249
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.66 E-value=1.3e-08 Score=103.04 Aligned_cols=241 Identities=15% Similarity=0.063 Sum_probs=180.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 002441 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (921)
+...|+.|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++..|..|...+..++.++..+..+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002441 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (921)
+..+|.+-++.++.+.|+..+....++ .+. ...++. -+.+..|. +-+|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a----~i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA----RIN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH----Hhc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 999999999999999999654433222 211 111110 01111111 1222
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002441 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (921)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 399 (921)
.+-..+++.+ ..-|..+...|.++.++.++..-+....++...-.+ +..|.+.-++++++....+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 122455666777778888777766655444444344 6677888888999998888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002441 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
.........+.+---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 776666666667777788899999999999999998776544
No 250
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.66 E-value=4.9e-07 Score=100.86 Aligned_cols=261 Identities=17% Similarity=0.144 Sum_probs=144.8
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcC--CCceEEeec-cCCCC---CCCCCccEEEecCCCCCCCcccCcccc
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWI-GYPNT---TGLPTIDYRITDSLADPPETKQKHVEE 629 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r--~APvQ~~~~-G~p~t---tG~~~~Dy~i~d~~~~p~~~~~~~~e~ 629 (921)
..+.+.|++.++||++--+.++ +-...++.| ..|+=+.-. ..|+- ......|.+++.. |......-..+
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~ 155 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPK 155 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCC
Confidence 3567788999999999765444 223333333 234422211 11110 0112334444321 11100122345
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 002441 630 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHR 706 (921)
Q Consensus 630 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 706 (921)
+..+|+..-. ... ..........++.+..+++.+.+. .|.....+ +++.++... | -++++.|.+. .+.
T Consensus 156 i~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~-----~~~ 226 (357)
T PRK00726 156 AVVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGD-----LEE 226 (357)
T ss_pred EEEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCc-----HHH
Confidence 6666653211 000 000111112333444455555543 34333333 666665443 4 4556666552 245
Q ss_pred HHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc---ccchhHHHh
Q 002441 707 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLT 783 (921)
Q Consensus 707 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~ 783 (921)
+.+..+ +|+. |.|.+.+ .++...+..||+++-+ +|+.|++|||++|+|||+.+..... ...-+.++.
T Consensus 227 ~~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 227 VRAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred HHHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 555555 7774 8898886 3555666679999853 3668899999999999987642111 111245566
Q ss_pred hcCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 784 KVGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 784 ~~gl~~~ia-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
..|..-++. .| .+++.+....+.+|++.++.+++..++.. .-++..+.++.+++..+
T Consensus 297 ~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred HCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 667655553 34 89999999999999999999999887662 33566777766665543
No 251
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=6e-07 Score=93.46 Aligned_cols=107 Identities=26% Similarity=0.348 Sum_probs=87.0
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002441 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (921)
Q Consensus 334 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~ 406 (921)
....+..+..+ .+.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45556666655 55688888888888888888887 5688888888888889999998888888887764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHh
Q 002441 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
.+|.++..+|++++|+..|+++++.+|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8899998899999999999999999888765543
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=98.66 E-value=1.5e-06 Score=94.22 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=117.5
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 002441 304 YNLGVAYGEML---KFDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFS 368 (921)
Q Consensus 304 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 368 (921)
+..|......+ ..+.|+.+|.+++ .++|..+.+|..++.++... ....+|....++|++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44454444443 3567788888888 78888888888888887654 245678888899999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhh
Q 002441 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~ 448 (921)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+..-.+..-.|
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876665544333244
Q ss_pred ccC
Q 002441 449 INE 451 (921)
Q Consensus 449 ~~~ 451 (921)
...
T Consensus 419 ~~~ 421 (458)
T PRK11906 419 VPN 421 (458)
T ss_pred cCC
Confidence 443
No 253
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=1.1e-06 Score=100.70 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=113.1
Q ss_pred HHhCCCCHHH--HHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 002441 75 LEKDSGNVEA--HIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE--------GRLVEAAESYHK 141 (921)
Q Consensus 75 l~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------g~~~~A~~~~~~ 141 (921)
....|.+..+ ++..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+...+.+..++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666554 4566766665544 77899999999999999999998888877553 234566667777
Q ss_pred HHhc--CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002441 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (921)
Q Consensus 142 al~~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (921)
++.+ .+..+. ++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~-------~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPR-------IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 444433 355667777778999999999999999999 588999999999999999999999999999
Q ss_pred hCCCCHH
Q 002441 220 ERPMYAE 226 (921)
Q Consensus 220 ~~p~~~~ 226 (921)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
No 254
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.7e-05 Score=78.98 Aligned_cols=256 Identities=16% Similarity=0.098 Sum_probs=172.8
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002441 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (921)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (921)
-++..|+|.+++..-++.-... ...+....+.+.|..+|++...+.-....- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3445588888887766654433 567777788888888888776555443321 122344455555555555555544
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002441 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (921)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (921)
..+.+.+........ ......-+.++...+++++|+...... .+.++...-..++.++.+++-|.+.+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433322211111 112223345566678889888877663 3455666666788888889999999988
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002441 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (921)
Q Consensus 326 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 401 (921)
+.+++.+ ..+..||..+.+ .+++.+|.-+|++.-+..+..+..+..++.+...+|++++|...++.++..++++
T Consensus 163 mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 8887654 344445555443 3468888889998888777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHhhcCCCChh
Q 002441 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 437 (921)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~l~P~~~~ 437 (921)
++.+.++..+-...|...++.+ ...+....+|+++.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999888888888766654 45566666777653
No 255
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.62 E-value=1.3e-06 Score=99.14 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=119.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCCE
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 721 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~~~~~~~~~~~~~--------gi-~~~rv 721 (921)
+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+....+.+++.+++. |- +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 44567788866 89999999999999999997 4577765443 2223444555555543 21 11114
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002441 722 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 794 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~ 794 (921)
++++...+.++..+.|+.+||+|-|+-+ +-+.|++|||+||+| ||. |+.+++. ..++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~~-~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGAA-QELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCCh-HHhC-CcEEECCCC
Confidence 5544333478999999999999999988 559999999999999 665 5544211 1122 3444 367
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002441 795 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 795 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~ 842 (921)
.++..+...++.+ +++.+....+++++++.+ +|...|++.+...+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8888877777666 667778878888888643 78999988876554
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.6e-07 Score=93.34 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.|......|+.+++.|+|..|...|++++..-.. ...++.|++.|+.++++|.+|+....++|..
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4555677899999999999999999998876321 1456899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002441 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
+|++..+++..|.++..+|+++.|+..|++++++.|++..+...+..+..... ...++..+.|.+++..
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~------~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR------EYEEKEKKMYANMFAK 355 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999887777666554432 2233445566666544
No 257
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.61 E-value=6.3e-07 Score=99.67 Aligned_cols=242 Identities=18% Similarity=0.199 Sum_probs=132.9
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhhcC--CCceEEeec-cCCC---CCCCCCccEEEecCCCCCCCc-cc-Cccc
Q 002441 557 KVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWI-GYPN---TTGLPTIDYRITDSLADPPET-KQ-KHVE 628 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r--~APvQ~~~~-G~p~---ttG~~~~Dy~i~d~~~~p~~~-~~-~~~e 628 (921)
.+.+.|+..++||++--++.. +-...++.+ -.|+=+.-. .+|+ .-.....|.+++ +... .. .-.+
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~--~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~vi~-----~s~~~~~~~~~~ 152 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV--SGPVGLAAKLLGIPLVIHEQNAVPGLANRLLARFADRVAL-----SFPETAKYFPKD 152 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc--chHHHHHHHHhCCCEEEEcCCCCccHHHHHHHHhhCEEEE-----cchhhhhcCCCC
Confidence 567788999999998644332 222222222 245422110 1111 001122344442 2221 11 2245
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEE-EecCCCCCHHHH
Q 002441 629 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLV-VKCKPFCCDSVR 704 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~-~~~~~~~~~~~~ 704 (921)
++..+|+.. ...... ..+.+....++++..++.++.+. .|...+++ ++...+. . ++.+++ +.|.+ ..
T Consensus 153 ~~~~i~n~v-~~~~~~-~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~ 223 (350)
T cd03785 153 KAVVTGNPV-REEILA-LDRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DL 223 (350)
T ss_pred cEEEECCCC-chHHhh-hhhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cH
Confidence 666666532 111000 00112233455555455555433 23222332 4444433 2 455544 44543 33
Q ss_pred HHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc---ccchhHH
Q 002441 705 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSL 781 (921)
Q Consensus 705 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~ 781 (921)
+.+.+.++++ .++|.|.|.+ .+....|..||+++-+ +|++|++|||.+|+|||+.+-.... ....+..
T Consensus 224 ~~l~~~~~~~---~~~v~~~g~~---~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 EEVKKAYEEL---GVNYEVFPFI---DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred HHHHHHHhcc---CCCeEEeehh---hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 5566666665 3789999986 4666777789999953 3678999999999999986432211 1112355
Q ss_pred HhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002441 782 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 782 l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
+...|..-++.. |.+++.+....|.+|++.+..++...++..
T Consensus 295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 295 LVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666676666653 799999999999999999998988877653
No 258
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.61 E-value=1.3e-06 Score=97.80 Aligned_cols=297 Identities=13% Similarity=0.107 Sum_probs=163.3
Q ss_pred cchhhhhhhcccccccC-CceEEEEEecccCCChhhHHHHHHHhhhCCeeEEccC--CC--------HHHHHHHHHhCCc
Q 002441 499 THSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDKI 567 (921)
Q Consensus 499 ~H~v~~~~~~~l~~hd~-~~fev~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~i 567 (921)
+.|--.++.+++..... ..|++.+..++..-+. ...+.+.+.-..+....+.+ -+ -.++++.+++.++
T Consensus 9 tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p 87 (365)
T TIGR00236 9 TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKP 87 (365)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45555566677665554 4678887777765432 23333222111222233322 11 1457788999999
Q ss_pred cEEEecCCCCCCCchhhhh--cCCCceEEeeccCCCCCCCC--CccE-------EEecCCCCCCCcc-------cCcccc
Q 002441 568 DILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVEE 629 (921)
Q Consensus 568 diLvdl~g~t~~~r~~~~a--~r~APvQ~~~~G~p~ttG~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e~ 629 (921)
||++=. |.+...-.+..+ ..-.|| +..-|.-.|.+.. .-|- .++|.+..|.+.. ..-.|+
T Consensus 88 Div~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~ 165 (365)
T TIGR00236 88 DIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADS 165 (365)
T ss_pred CEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCccc
Confidence 998754 222211112222 233565 2222222222211 1111 1345555554331 112345
Q ss_pred eEEcCCCccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002441 630 LIRLPECFLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 630 ~~~lp~~~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
+..+++..+. +.+... ........+ .++.++++++++. .|..+.+++++.++.+..|+.++++.+.+. ..
T Consensus 166 I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~ 242 (365)
T TIGR00236 166 IFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--PV 242 (365)
T ss_pred EEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--hH
Confidence 6666654321 111100 011111112 2345566666543 366789999999998888999888865431 23
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhH
Q 002441 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS 780 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~ 780 (921)
.+..+.+ ..|.. ++|.|.+..+ ..+++..+..+|+++-++ |+.++||+++|+|||+.. |..-.
T Consensus 243 ~~~~~~~---~~~~~-~~v~~~~~~~-~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~~~~e------ 307 (365)
T TIGR00236 243 VREPLHK---HLGDS-KRVHLIEPLE-YLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTTERPE------ 307 (365)
T ss_pred HHHHHHH---HhCCC-CCEEEECCCC-hHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCCCChH------
Confidence 3433332 34554 7899999876 578899999999998443 344799999999999963 22111
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002441 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 817 (921)
Q Consensus 781 ~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~ 817 (921)
+...|..-++..|.++..+...++.+|++.+.+++.
T Consensus 308 -~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~ 343 (365)
T TIGR00236 308 -TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSN 343 (365)
T ss_pred -HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhh
Confidence 112354445667999999988899999877666654
No 259
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00077 Score=73.61 Aligned_cols=372 Identities=15% Similarity=0.056 Sum_probs=231.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002441 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+....+|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667889999999999999887766 9999999999999999999999999999999999999999999999865332 22
Q ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 002441 152 AAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (921)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (921)
.|.. | +..+-...++...+.. .|+-++. .++.....|...+..+. ++.+.+.-...|+
T Consensus 88 LW~l----Y--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWKL----Y--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHH----H--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 2211 1 1122223344333333 3333332 25555556665554432 3346677778888
Q ss_pred HHHHhCCCCHH-HHH-------------HHHHHHHHCCCHHHHHHHHHHHHHhC-------C----ChHHHHHHHHHHHH
Q 002441 216 KAALERPMYAE-AYC-------------NMGVIYKNRGDLESAIACYERCLAVS-------P----NFEIAKNNMAIALT 270 (921)
Q Consensus 216 ~al~~~p~~~~-~~~-------------~la~~~~~~g~~~~A~~~~~~al~~~-------p----~~~~~~~~la~~~~ 270 (921)
+++..--.+.+ .|. ..-.+-.....|..|...+++...+. | .....-......+.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 88764333321 111 11112223345666666666654431 1 11111111111111
Q ss_pred hhhhh-----hh-hcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHh
Q 002441 271 DLGTK-----VK-LEGDI--NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH 328 (921)
Q Consensus 271 ~lg~~-----~~-~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~ 328 (921)
++-.. +. ..+.. ....-.+++++..-+-.+++|+..+..+...++ .+++..+|++++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 11111 11 11111 223345677777777778887776666665555 6788888888876
Q ss_pred hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002441 329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 329 ~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
.- ..+...++.++..-...- +++.-..++++++.+...+. -++..+-..-.+..-.+.|...|.++-+..-..-.
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 53 233445555554443333 37777888888887754433 35556666666667788899999999876544334
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccC
Q 002441 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451 (921)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~ 451 (921)
++..-|.+ |.-.++.+-|...|+-.++..++.+......+.-+.++.+
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 44433333 4568999999999999999999999887777666666654
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=2.3e-05 Score=83.73 Aligned_cols=157 Identities=12% Similarity=0.054 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCCC--------CHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NAC 117 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~ 117 (921)
..+........+++..+..-+....+.+.....+.+.+++.++..++..|++.+|.+.+... +...|. .-.
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI 284 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe
Confidence 45555666777788888888888888888888889999999999999999999999887643 122222 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC--CChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 118 AHTHCGILYKDEGRLVEAAESYHKALS-A--------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 118 a~~~la~~~~~~g~~~~A~~~~~~al~-~--------~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
.|.++|.++++.|.|.-+..+|.++++ . .| ...-....-..++++.|..+...|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 568999999999999999999999996 1 11 111111223456899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002441 187 DPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 187 ~p~~~~~~~~la~~~~~ 203 (921)
.-.++..|..++.++..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999998864
No 261
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.57 E-value=1.1e-06 Score=100.72 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=117.1
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHH----HHHHHHHHHHHcCCC-----CCC
Q 002441 657 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDS----VRHRFLSTLEQLGLE-----SLR 720 (921)
Q Consensus 657 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~----~~~~~~~~~~~~gi~-----~~r 720 (921)
.+..++++..++ .|..+..++++.++++..|+ .+|++++.+. .+.+ .++.+.+...+.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 345567777766 89999999999999999997 5677776543 2222 333333333332211 133
Q ss_pred EEEc-cCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCccccc--
Q 002441 721 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 792 (921)
Q Consensus 721 v~~~-~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~ia-- 792 (921)
|+|. +.++ ..+..+.|+.|||++-|+-. +-|.|.+|||+||+| ||+ ++.+++.-. |-..++.
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 5554 4444 68999999999999999987 558999999999999 664 444322111 3344553
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002441 793 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 793 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~ 840 (921)
.|.+++.+...++.+++ +.++.+.++.++.+. -||...|+..+..
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 58999999888888855 666777777777753 3889988877654
No 262
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=1.5e-06 Score=95.04 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 383 (921)
..+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455666678899999999999888765 666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 384 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
++.|++..+++++..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877644
No 263
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=6.6e-05 Score=80.38 Aligned_cols=262 Identities=14% Similarity=0.100 Sum_probs=181.0
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHCCCH
Q 002441 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~ 241 (921)
.+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...+. ....+.++|.+++++|.|
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y 299 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY 299 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH
Confidence 33444444444444445566778888899999999999999988664 222222 223568999999999999
Q ss_pred HHHHHHHHHHHHh---------C--CChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 242 ESAIACYERCLAV---------S--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (921)
Q Consensus 242 ~~A~~~~~~al~~---------~--p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 310 (921)
.-+..+|.++++. . +...........++++.|..+...|+.-.|.++|.++......++..|..++.++
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999961 1 1111122233456778888888899999999999999999999999999999988
Q ss_pred HHcCC-------------------------------------------------hHHHHHHHHHHHhhC-----------
Q 002441 311 GEMLK-------------------------------------------------FDMAIVFYELAFHFN----------- 330 (921)
Q Consensus 311 ~~~g~-------------------------------------------------~~~A~~~~~~al~~~----------- 330 (921)
+...+ .+-|.-+++.++-+-
T Consensus 380 ima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~ 459 (696)
T KOG2471|consen 380 IMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILS 459 (696)
T ss_pred HHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhh
Confidence 63211 133444555444320
Q ss_pred ----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002441 331 ----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (921)
Q Consensus 331 ----------------------------------p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (921)
| +. ..++.+.+.+-...|+.-.|+..-++.++.
T Consensus 460 ~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~- 538 (696)
T KOG2471|consen 460 VAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL- 538 (696)
T ss_pred hhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-
Confidence 0 00 123445666777889999999998888875
Q ss_pred CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH-----------------------hCCC----------C-----
Q 002441 365 PNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y----- 401 (921)
Q Consensus 365 p~~~~~~~~la~~~-----~~~g~~~~A~~~l~~al~-----------------------~~p~----------~----- 401 (921)
++...++..||.+| ..+.+..+|...+.--+- ++|. .
T Consensus 539 ~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar 618 (696)
T KOG2471|consen 539 ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEAR 618 (696)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHh
Confidence 44455665555554 456777777766654210 0110 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002441 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
...+++||.+|.-+|++++|..++..+..+-+
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999998887
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=7e-07 Score=84.29 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 411 (921)
+..-|.-++..|+|++|..-|..|+.+.|... ..|.+.|.++.+++.++.|+..+.++|+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34456777888888888888888888887653 3788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChhhHhh
Q 002441 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
|.++.++++|++.|++.++++|....+...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877654
No 265
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.54 E-value=1.3e-06 Score=97.79 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=159.6
Q ss_pred hhcccccccC-CceEEEEEecccCCChhhHH-HHHH-HhhhCCeeEEccCCC----------HHHHHHHHHhCCccEEEe
Q 002441 506 IEAPLVYHDY-QNYKVVVYSAVVKADAKTIR-FREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILVE 572 (921)
Q Consensus 506 ~~~~l~~hd~-~~fev~~Y~~~~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idiLvd 572 (921)
+.+++..... ..+++.++.++..-|..... +..- .....+++..+.+.+ -.++.+.|++.++||++=
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~ 94 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLV 94 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3444444333 47888888777665543211 1111 111223344444431 145667888899999874
Q ss_pred cCCCCCCCchhhhhcCCCceEEeec--cCCCCCCCCCccE-------EEecCCCCCCCcccCc-------ccceEEcCCC
Q 002441 573 LTGHTANNKLGMMACQPAPVQVTWI--GYPNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPEC 636 (921)
Q Consensus 573 l~g~t~~~r~~~~a~r~APvQ~~~~--G~p~ttG~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~~~~lp~~ 636 (921)
. |++...-...++.|..-|.+... |. .|.-.+.++. .++|.++.|-+....+ .+++..+++.
T Consensus 95 ~-g~~~~~~~~~~aa~~~~iPvv~~~~g~-~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~ 172 (363)
T cd03786 95 L-GDTNETLAAALAAFKLGIPVAHVEAGL-RSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNT 172 (363)
T ss_pred e-CCchHHHHHHHHHHHcCCCEEEEeccc-ccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECch
Confidence 3 44332223344444433333321 21 1100011111 1355555554432221 3446566654
Q ss_pred ccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 002441 637 FLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707 (921)
Q Consensus 637 ~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 707 (921)
... +.+... ....+...+++++.+++.++.+. .|.-+.+++.+.++... +.++++.+.+ ..+..+
T Consensus 173 v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l 246 (363)
T cd03786 173 MIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRI 246 (363)
T ss_pred HHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHH
Confidence 221 111111 11111233455565555566654 46667788888776543 4455554433 456777
Q ss_pred HHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002441 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 787 (921)
Q Consensus 708 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 787 (921)
++.+.+.|+..++|.|.+... ..+....|..||+++-++ | +.+.||+++|+|||+..... ..-.+...|.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~ 316 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNLRDRT-----ERPETVESGT 316 (363)
T ss_pred HHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEeeCCCC-----ccchhhheee
Confidence 777788887447899988754 456667788899998554 2 35789999999999965321 1112334466
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002441 788 KHLIAKNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 788 ~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.-++..|.++.++....+.+|+..+..++
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 55666678999998889999986655543
No 266
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.51 E-value=8.3e-07 Score=99.95 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002441 670 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 670 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~ 748 (921)
++.+.+++++..+.+..|+.++++.+++ +..++.+.+...+. |+. +.+.. .+....|+.||+++-+
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~-- 268 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAA-- 268 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEEC--
Confidence 4568888999988888899998887642 24556677777777 664 44432 2456677789999975
Q ss_pred CCCcccHHHHhhcCCcEEecCCCcccccchhHHH---hhcCC----------ccccc--CCHHHHHHHHHHHhcCHHHHH
Q 002441 749 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVGL----------KHLIA--KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l---~~~gl----------~~~ia--~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+|++++||+++|+|||+.+.-.......+..+ ...|+ ++++. .|.++..+....|.+|++.++
T Consensus 269 --sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 269 --SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred --ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 37777899999999998654321111111111 11122 34443 467899999999999999999
Q ss_pred HHHHHHHHHh
Q 002441 814 NLRMSLRDLM 823 (921)
Q Consensus 814 ~~r~~~~~~~ 823 (921)
.+++.+++..
T Consensus 347 ~~~~~~~~~~ 356 (380)
T PRK00025 347 ALLEGFTELH 356 (380)
T ss_pred HHHHHHHHHH
Confidence 9998875543
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.51 E-value=3.7e-05 Score=77.13 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
.+..++..|...+..|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++++ .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 46789999999999999999999999999988765 5688999999999999999999999999999998876 3
Q ss_pred HHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (921)
Q Consensus 158 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (921)
-+++..|.+++.. .-..+|+..|++.+...|+..-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3466666665432 22356777777888888876432111111 1111111 123345
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhhhh
Q 002441 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (921)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~lg~ 274 (921)
.+|..|.+.|.+..|+..++.+++..|+.. +++..+..+|..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 688999999999999999999999877654 455566677777764
No 268
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0003 Score=81.16 Aligned_cols=296 Identities=14% Similarity=0.044 Sum_probs=192.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
...+++.+|.....+.++..|+...+ ....|..+.+.|+.++|..+++..-...+++...+..+-.+|..+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA-------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 45688999999999999999987654 33345567778999999988887777778888889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhc----CCH
Q 002441 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE----GDI 282 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~----~~~ 282 (921)
+++|..+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|+.+........++.. +..-... --.
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq-s~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ-SIFSENELLDPILL 170 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH-hccCCcccccchhH
Confidence 99999999999999999 88888888899999988887777667777778766443333222221 1000000 112
Q ss_pred HHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHcCChHHHHHHHHHH-H-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 283 NQGVAYYKKALYYN-WHYA-DAMYNLGVAYGEMLKFDMAIVFYELA-F-HFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 283 ~~A~~~~~~al~~~-~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a-l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
.-|...+++.++.. +-.. .-....-.++..+|++++|...+..- . ...+.+...-+.....+...+++.+-.+...
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34555556666554 2211 11223345667788999999998432 2 3344455555667778888899999999999
Q ss_pred HHHhhCCCCHHHHHH-H------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 002441 359 MALSIKPNFSQSLNN-L------------GVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 359 ~al~~~p~~~~~~~~-l------------a~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+++...+++...+.. . +..+...+..+...+..++.+..+...+ -++..+-.-+...|+.+++...
T Consensus 251 ~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 251 RLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred HHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 999888887222111 1 1112222334444444455444422222 2334444444567888887766
Q ss_pred HHHHhhc
Q 002441 425 YEQCLKI 431 (921)
Q Consensus 425 ~~~al~l 431 (921)
|-+-+-.
T Consensus 331 y~~kfg~ 337 (932)
T KOG2053|consen 331 YFKKFGD 337 (932)
T ss_pred HHHHhCC
Confidence 6554433
No 269
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=5.9e-06 Score=84.60 Aligned_cols=269 Identities=16% Similarity=0.202 Sum_probs=177.4
Q ss_pred HHHHHhCCccEEEecCCCCCCCchhhhh-cCCCceEEeeccCCCCCC-------------C-------------------
Q 002441 559 AAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTG-------------L------------------- 605 (921)
Q Consensus 559 a~~i~~d~idiLvdl~g~t~~~r~~~~a-~r~APvQ~~~~G~p~ttG-------------~------------------- 605 (921)
-+.|..--+||-||.+|+.- ..++|. +|--|| ++|.-||.-+- +
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 35566678999999999986 667776 555555 56667774221 0
Q ss_pred -CCccEEEecCCCCCCCcccCcccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHHH
Q 002441 606 -PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWAR 681 (921)
Q Consensus 606 -~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~~ 681 (921)
...|++++.. .=...+.-.||.--.|.+.|.|.... ....... ..+..++..+.. |+.|.|+ ++++.+-
T Consensus 220 G~~ad~vm~Ns-----sWT~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al 292 (465)
T KOG1387|consen 220 GSKADIVMTNS-----SWTNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFAL 292 (465)
T ss_pred cccceEEEecc-----hhhHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHH
Confidence 1245555431 10112222344444455556554321 1000011 122233444444 8899999 9998887
Q ss_pred HHhHcCC------cEEEEecC--CCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC-CCCCc
Q 002441 682 ILCAVPN------SRLVVKCK--PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGT 752 (921)
Q Consensus 682 il~~~p~------~~l~~~~~--~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~-~~~g~ 752 (921)
-+...|. ..|+++|. +..+......|+.+++.+.|+ +.|.|.-.+| .++....++-|-+.+.+- -...|
T Consensus 293 ~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHFG 370 (465)
T KOG1387|consen 293 YLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHFG 370 (465)
T ss_pred HHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhcc
Confidence 7766654 78888864 223455667899999999998 6799998888 789999999999999997 45889
Q ss_pred ccHHHHhhcC-CcEEecCCCcccccchhHHHhhcCC-cccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCC
Q 002441 753 TTTCESLYMG-VPCVTMAGSVHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVC 829 (921)
Q Consensus 753 ~t~~eal~~G-vPvvt~~g~~~~~r~~~~~l~~~gl-~~~ia~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~l~ 829 (921)
.+.+|+|++| +|||--.|...-.=|. .-.|- ..+.+.|.+||++..+.... |.+.+..+|...|... ..|
T Consensus 371 IsVVEyMAAGlIpi~h~SgGP~lDIV~----~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~---~RF 443 (465)
T KOG1387|consen 371 ISVVEYMAAGLIPIVHNSGGPLLDIVT----PWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSL---ARF 443 (465)
T ss_pred hhHHHHHhcCceEEEeCCCCCceeeee----ccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHh
Confidence 9999999999 5676555543322221 11232 46889999999998887764 6666888888877764 447
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002441 830 DGQNFALGLESTYRNMW 846 (921)
Q Consensus 830 ~~~~~~~~~e~~~~~~~ 846 (921)
....|-++++..+..+.
T Consensus 444 sE~~F~kd~~~~i~kll 460 (465)
T KOG1387|consen 444 GELKFDKDWENPICKLL 460 (465)
T ss_pred hHHHHHHhHhHHHHHhh
Confidence 78889999988777654
No 270
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.48 E-value=2e-06 Score=95.58 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=98.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHHH-HHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002441 654 ALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 654 ~~~~~~~~f~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
+++++.++++++.+. .|..... .+++.++.. ++.++++.+++ ...+.+.+.++++|+. ++|.|..
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l~-~~v~~~~----- 241 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGIE-AIVTFID----- 241 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCce-EEecCcc-----
Confidence 455566667776543 3333332 345555443 23444443332 1236777778888885 6666652
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccc--ccchhHHHhhcCCccccc-C--CHHHHHHHHHHH
Q 002441 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 805 (921)
Q Consensus 731 ~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia-~--~~~~y~~~a~~l 805 (921)
.+....|..||+++-+ +|++|++|||++|+|||+.+-.... .+..+.++...|..-++. . +.+++.+....|
T Consensus 242 ~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 242 ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 1556667779999953 4678899999999999986422211 122334666655555553 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002441 806 ASDVTALANLRMSLRDLM 823 (921)
Q Consensus 806 ~~d~~~~~~~r~~~~~~~ 823 (921)
.+|++.+.++++..++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999988887653
No 271
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.48 E-value=3.1e-06 Score=92.63 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=107.2
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (921)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 355 (921)
....++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|++
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 34467899999999999988765 667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
+.+++++..|++...|..|+.+|..+|++++|+..++.+
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999877744
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.46 E-value=4.7e-06 Score=76.29 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002441 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 119 (921)
.....++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 468899999999999999999999999999988864 57899999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChHh
Q 002441 120 THCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 120 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 152 (921)
+..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999988876 889999999999999997654
No 273
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.46 E-value=4.5e-06 Score=75.30 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 002441 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (921)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 375 (921)
+.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555555555666666666666655543222 345555555555666666666666555555555 444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002441 376 VVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al 395 (921)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555566655555555444
No 274
>PLN02275 transferase, transferring glycosyl groups
Probab=98.45 E-value=1.7e-06 Score=96.84 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=92.3
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHH-----------------hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC
Q 002441 659 FITFGSFNN--LAKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 719 (921)
Q Consensus 659 ~~~f~~~~~--~~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 719 (921)
.++++...+ ..|..+.++++...+. +..|+.+|+++|.| +.++.+++.++++|++ +
T Consensus 213 ~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~ 287 (371)
T PLN02275 213 PALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR-H 287 (371)
T ss_pred cEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-c
Confidence 334544454 4688888888877664 23589999999977 4678899999999996 5
Q ss_pred CEEEcc-CcCCcHHHHHhcccccEEecCCC----CCCcccHHHHhhcCCcEEecCCCcccccchh--HHHhhcCCccccc
Q 002441 720 RVDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA 792 (921)
Q Consensus 720 rv~~~~-~~~~~~~~~~~~~~~D~~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia 792 (921)
|+|.+ .++ .++....|..+||++-+.+ .+-+++++|||+||+|||+ +++|+ -++. -|-..++.
T Consensus 288 -v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa-------~~~gg~~eiv~-~g~~G~lv 357 (371)
T PLN02275 288 -VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYSCIGELVK-DGKNGLLF 357 (371)
T ss_pred -eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE-------ecCCChHHHcc-CCCCeEEE
Confidence 77765 465 6788888999999985322 3457899999999999997 33331 1222 25555666
Q ss_pred CCHHHHHHHHHHH
Q 002441 793 KNEDEYVQLALQL 805 (921)
Q Consensus 793 ~~~~~y~~~a~~l 805 (921)
.|.+++.+...+|
T Consensus 358 ~~~~~la~~i~~l 370 (371)
T PLN02275 358 SSSSELADQLLEL 370 (371)
T ss_pred CCHHHHHHHHHHh
Confidence 6777766655444
No 275
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=2.9e-06 Score=80.28 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 122 (921)
+..+-..|+.++.+|+|++|..-|..+|+.-|... ..|.+.|.++++++.++.|+..+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34455678899999999999999999999988743 4778899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
|.+|.+..++++|++.|+++++.+|....+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999999997765443
No 276
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=5.9e-07 Score=73.03 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=54.1
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
++..|+|++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567888888888888888888888888888888888888888888888888888887777766654
No 277
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.42 E-value=1.9e-06 Score=96.46 Aligned_cols=251 Identities=17% Similarity=0.139 Sum_probs=139.9
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCC---------CceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCc
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP---------APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 626 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~---------APvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~ 626 (921)
.++.+.|++.++|++|=.+| .+.+-....+.|. +|-|-+|-|.-+..-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 37888999999999987665 4444322122222 22222232221112234455555321 2222333
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 002441 627 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 696 (921)
Q Consensus 627 ~e---~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~ 696 (921)
.+ +...+.+......+. +.....+...+++++..+++.+. +. .|+.|.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 233333221110010 00000112234555554455442 33 4688999999999988899988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCccccc
Q 002441 697 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 776 (921)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r 776 (921)
+. .....+.+..+..|.. .+|.+.+. +....|..||+++-+. |++|+|++.+|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~~-~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGPD-LQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCCC-CcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 2334455555566664 57766543 1224667799999766 7777799999999887633222222
Q ss_pred chhHHH------------h-hcCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhh
Q 002441 777 VGVSLL------------T-KVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLMS 824 (921)
Q Consensus 777 ~~~~~l------------~-~~gl~~~ia--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~~ 824 (921)
..+..+ . .-..+|++- -+++...+...+|..|+ +.++.+++.+++.+.
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 367 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQ 367 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 222221 1 122356663 36788888999999999 999999998887643
No 278
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=6.8e-06 Score=74.17 Aligned_cols=99 Identities=24% Similarity=0.149 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHH
Q 002441 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPA 193 (921)
Q Consensus 117 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 193 (921)
.+++.+|.++-..|+.++|+..|++++........ ...++..+|..+...|++++|+..+++.+...|+ +..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~----~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD----RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 35566666666666666666666666665443322 2334556666666666666666666666666565 5555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002441 194 YYNLGVVYSELMQYDTALGCYEKAAL 219 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~ 219 (921)
...++.++...|++++|+..+-.++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666665543
No 279
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.41 E-value=5.3e-06 Score=92.90 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=103.1
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 657 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 657 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.+.+++|.+.++. |... ++...+.+..|+..|+|+|.+... ..... + .. .++|.|+|.++ +++...
T Consensus 203 ~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~~~~----~--~~--~~nV~~~G~~~-~~~l~~ 269 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-IDPSA----L--LR--LPNVHYLGPKP-YKELPA 269 (373)
T ss_pred CCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cChhH----h--cc--CCCEEEeCCCC-HHHHHH
Confidence 3455677777665 4443 455667778899999999875111 01111 1 11 37899999987 688889
Q ss_pred hcccccEEecCCCCC------CcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHH-hcC
Q 002441 736 AYSLMDISLDTFPYA------GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL-ASD 808 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~------g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l-~~d 808 (921)
.++.+||++-|+-.+ .++.++|+|+||+|||+-. ++ .+....+..-+++.|.+++++...+. ..+
T Consensus 270 ~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~~-~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 270 YLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------LP-EVRRYEDEVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred HHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------cH-HHHhhcCcEEEeCCCHHHHHHHHHHHHhcC
Confidence 999999999988432 2467999999999999743 32 22232232234567899999999884 444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 809 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
...+...+ +. +.+. ++++..+..+++.++
T Consensus 342 ~~~~~~~~---~~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 342 GPARERRR---LR-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred CchHHHHH---HH-HHHH--CCHHHHHHHHHHHHH
Confidence 33222211 11 2323 788888888886554
No 280
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.40 E-value=1.2e-06 Score=94.90 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 364 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+|+++..++++|.+|..+|++++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778888888888888888888888888888888888754 888888888888888888888888887
No 281
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.39 E-value=5.1e-06 Score=85.60 Aligned_cols=104 Identities=16% Similarity=0.060 Sum_probs=78.5
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccc
Q 002441 661 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 740 (921)
Q Consensus 661 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 740 (921)
.+|.++. .|..+.+++++.++.+..|+.++++.|.+.. ...........+.. ++|.+.+..+..++....+..|
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcC
Confidence 5666554 5999999999999999999999999987532 22222224566665 8999999875444555555569
Q ss_pred cEEecCCCC-CCcccHHHHhhcCCcEEecCC
Q 002441 741 DISLDTFPY-AGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 741 D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g 770 (921)
||+|-|.-. +.+++.+|||+||+|||+-..
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~ 213 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDV 213 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCC
Confidence 999988865 668899999999999998443
No 282
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=6.4e-06 Score=83.39 Aligned_cols=106 Identities=22% Similarity=0.171 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 002441 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (921)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (921)
.|..|.-++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|+++.+ ...++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA----pdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA----PDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC----hHHHH
Confidence 6777777778888888888888888877765 5677788888888888888888888887777776654 34466
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (921)
.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 677777777777777777777777777665543
No 283
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.38 E-value=5.4e-06 Score=100.50 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=122.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-HHHHHHHHHHHHc--------CC-CCC-C
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GL-ESL-R 720 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~-~~~~~~~~~~~~~--------gi-~~~-r 720 (921)
+..+++++.|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |- +.. .
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 44567787876 89999999999999999996 6788886443222 3333444444332 22 111 2
Q ss_pred EEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--
Q 002441 721 VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 791 (921)
Q Consensus 721 v~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i-- 791 (921)
+.|.+.++ .++..+.|+.+||+|-|+-+ +-+.+++|||+| |+|||+ ...|++ .|. ..++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~----~~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA----EALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC----cCeEEC
Confidence 34556665 78999999999999999988 558899999999 556764 222211 111 1233
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002441 792 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 850 (921)
Q Consensus 792 a~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~ 850 (921)
..|.++..+...++.+++ +.+....+++++.+. -||+..+++.+.+.|+.+|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 358888888888877754 444444456776653 38999999999999999997643
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=4.8e-05 Score=71.40 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (921)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (921)
+.+....-..+.++..|. ..-.+.||..+.+.|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 334444444444444554 34467899999999999999999999987 4677889999999999999999999999999
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 360 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
..+.+|. .++....+|.++..+|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999875 4678888999999999999999999999999988 77888889999999999888877665543
No 285
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.35 E-value=1.2e-06 Score=71.11 Aligned_cols=54 Identities=41% Similarity=0.514 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 334444444444444444444444444444444444444444444444444444
No 286
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.31 E-value=3.4e-06 Score=69.60 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=51.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
..+++..++|++|+++++++++.+|+++..+..+|.++...|++++|+..|+++++..|++..+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777777888888888877777777777777788877788888888888877777777766655443
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00015 Score=70.79 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=122.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH
Q 002441 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (921)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (921)
.+++++|.++|.++ |.+|...+++..|-..|.++-+..-... .....+..|...+.+|.+ .+.+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhhc-cChH
Confidence 34677777776665 3344444455555555555443322111 011124445555555544 4778
Q ss_pred HHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCH
Q 002441 175 DGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 241 (921)
+|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+.... -...+...+..-..+++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888887775543 33455788888765 8999999999999765432 234566677778889999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002441 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
.+|+..|++.....-++....+..-..+..-|..+....+.-.+...+++..+.+|...
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 99999999998877766655555555556666666666677677777777777777644
No 288
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.28 E-value=2.1e-05 Score=95.21 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=126.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCC-CCHHHHHHHHHHHHHcC--CCC--CC-----E
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LES--LR-----V 721 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~~~~-~~~~~~~~~~~~~~~~g--i~~--~r-----v 721 (921)
+..++.+..++ .|..+..++++.++|+..|+.+ |+.++.+. .+.+..+.+++.+.+.+ |.. .. |
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 34456677765 8999999999999999999864 44344332 23345567777777664 431 12 2
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002441 722 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 794 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~ 794 (921)
+++...-+.++..+.|..+||||-|+-+ +-+.+.+|||+||+| +|. |++++.-- .+|-..++ ..|
T Consensus 358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~~-~l~~~allVnP~D 429 (797)
T PLN03063 358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAGQ-SLGAGALLVNPWN 429 (797)
T ss_pred EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCchh-hhcCCeEEECCCC
Confidence 3333222368999999999999999988 668899999999998 554 55542111 12333434 368
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002441 795 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 849 (921)
Q Consensus 795 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~ 849 (921)
.++..+...++.+ ++++++...+++++.+. -+|...|++.+.+.+...|...
T Consensus 430 ~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~---~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 430 ITEVSSAIKEALNMSDEERETRHRHNFQYVK---THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---hCCHHHHHHHHHHHHHHHhhhh
Confidence 8888888878777 77777777777777653 3689999999999999988643
No 289
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.28 E-value=4.3e-06 Score=69.01 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=36.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhH
Q 002441 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|++.|+++++..|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555443
No 290
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00035 Score=69.35 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002441 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP-------------MY------AEAYCNMGVIYKNRGDLESAIACYERC 251 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (921)
...|...-.++.++..+++|..-++..-+.+. +. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 44555556667777777777766665544321 11 123344566677778877777666554
Q ss_pred HHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002441 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (921)
Q Consensus 252 l~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 330 (921)
...-.+ +-.........+..++.+++-+ ..+.+.+..++.-.|+|.-....+.+.++.+
T Consensus 149 ~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 432111 1111111223355666666544 3567888889999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002441 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (921)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 404 (921)
|..+.....+|.+.++.|+.+.|..+|+..-+.. ....-+..+.+.++.-.+++.+|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 6678888999999999999999999999654432 2234577888899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002441 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.++.|.|+.-.|+...|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999754
No 291
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.27 E-value=2.7e-05 Score=71.39 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 002441 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNN 407 (921)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~ 407 (921)
+..++.-|...++.|+|++|++.|+......|-. ..+...++.+|++.+++++|+..+++.++++|+++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4445555555566666666666666655554433 34556666666666666666666666666665543 35556
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHhhcCCCChhhH
Q 002441 408 LGVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 408 la~~~~~~g~---------------~~~A~~~~~~al~l~P~~~~a~ 439 (921)
.|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 6666655554 7789999999999999987554
No 292
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.25 E-value=0.00092 Score=74.83 Aligned_cols=210 Identities=13% Similarity=0.150 Sum_probs=111.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002441 194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
|-.-|.+|.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-++-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence 334455666666667777666542 222 1211 122233455566666666666666543211
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (921)
...-.......++.+|+.+++.....+ .....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 736 -------~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 736 -------IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred -------HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 111111112345556655555433221 112345567777788888888888776642 2233345
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 002441 343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN 398 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~l~~a------l~----~~ 398 (921)
.|-+.|++++|.++-+++.. |.. ...|...+.-+.+.|++.+| +.+|++. +. .+
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 56667777777766665532 222 22344444445555555444 4444332 11 12
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002441 399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
|+. .+.+..+|.-|...|+..+|...|-++-
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 332 3567788888999999998888877653
No 293
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.24 E-value=2.3e-05 Score=86.64 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=129.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC-----CcEEEEecC-CCC-----CHHHHHHHHHHHHHcCCCCC
Q 002441 653 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP-----NSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLESL 719 (921)
Q Consensus 653 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p-----~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~gi~~~ 719 (921)
.+..+..+.|.++|+. -|-..-.+..+.......| .-++.+.+. |.. .-.....|+..+++.++..+
T Consensus 267 ~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~ 346 (495)
T KOG0853|consen 267 RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQ 346 (495)
T ss_pred eeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCc
Confidence 3455656779999954 5666666667776666664 445555551 221 12234678888999999778
Q ss_pred CEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEe-cCCCcccccchhHHHhhcCCcc-cccCCHH
Q 002441 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLTKVGLKH-LIAKNED 796 (921)
Q Consensus 720 rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt-~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~ 796 (921)
.|.|++.... .+-..++..+.+++-+... ..|.|++|||++|+|||+ ..|.+...-+. |... +|..+.+
T Consensus 347 ~v~~~~s~~~-~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~e 418 (495)
T KOG0853|consen 347 FVWFLPSTTR-VAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQE 418 (495)
T ss_pred eEEEecCCch-HHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCchH
Confidence 9999888764 4446667778888888876 999999999999999885 45654433222 4444 3344555
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002441 797 ---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 843 (921)
Q Consensus 797 ---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~ 843 (921)
.....-+.|.+|++.+.+++..-++++... |.+..|..++.....
T Consensus 419 ~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 419 AVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 488888999999999999999999998765 888777777777665
No 294
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.22 E-value=7e-06 Score=94.34 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=115.3
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-----------------
Q 002441 655 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE----------------- 717 (921)
Q Consensus 655 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~----------------- 717 (921)
.+...|.++.=.-+.|-....+.++.++++.+|++.|.+.|.+.. ......+.+..++.++.
T Consensus 318 ~~~~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 318 LYETEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred ccceEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 334445454112268889999999999999999999999876522 23445555555555554
Q ss_pred -----------CCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcC
Q 002441 718 -----------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 786 (921)
Q Consensus 718 -----------~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g 786 (921)
.+||.|.+... ..+....|..+.|++|+....|-.|.+||+..|||+|- -| . +-+-.-|
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIn-yg-------~-~~~V~d~ 466 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQIN-KV-------E-TDYVEHN 466 (519)
T ss_pred hcccchhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeee-cC-------C-ceeeEcC
Confidence 16999998754 35888999999999999987554499999999999992 11 1 1122237
Q ss_pred CcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002441 787 LKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 787 l~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
-.+.|..|.++..+.++.+..|+..+.++....-+.
T Consensus 467 ~NG~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~ 502 (519)
T TIGR03713 467 KNGYIIDDISELLKALDYYLDNLKNWNYSLAYSIKL 502 (519)
T ss_pred CCcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 777888999999999999999998777776655554
No 295
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=3.3e-05 Score=67.95 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002441 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 413 (921)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~ 413 (921)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456777788888999999999999988888999999999998999999999999998885443 357888899999
Q ss_pred HcCCHHHHHHHHHHHhhcCCC
Q 002441 414 DAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|+-+.|...|+.+-++-..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 999999999999998887554
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00019 Score=70.02 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002441 315 KFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 381 (921)
+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555553322 23344677777655 78899999999888764332 23566677777888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHH
Q 002441 382 GKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 382 g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~ 444 (921)
++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.+.-.++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 999999999999887765553 345666778888889999999999999999998877655433
No 297
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.18 E-value=0.00016 Score=79.07 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=89.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 344 YKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (921)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (921)
....|+...|++++..|+...|.... ...+||.++.+-|-..+|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34568999999999999999887544 67899999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHhhHH
Q 002441 423 DAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 423 ~~~~~al~l~P~~~~a~~~~l 443 (921)
+.|++|++++|+++.....++
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHH
Confidence 999999999999988766543
No 298
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=2e-05 Score=85.59 Aligned_cols=79 Identities=30% Similarity=0.348 Sum_probs=67.9
Q ss_pred CCCCcccccccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002441 33 SGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAV 109 (921)
Q Consensus 33 s~s~~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al 109 (921)
++++........+.....++.+|..|+..|+|++|+..|+++++.+|++.++ ++++|.+|..+|++++|+.++++++
T Consensus 60 ~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 60 SSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444456677889999999999999999999999999999999998854 9999999999999999999999999
Q ss_pred Hh
Q 002441 110 KL 111 (921)
Q Consensus 110 ~~ 111 (921)
++
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 87
No 299
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0018 Score=64.40 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002441 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~a~~~la~~~~~~g~~~~A~~~~~~ 141 (921)
+...|...-.++.++...++|...+...-.++..+ + .....-|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566667777778888888887776655543211 1 1223345556667777766665555
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002441 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (921)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (921)
....- ...-.........+..++.+++-+ ..+.+.+..++.-.|+|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 43311 111111222223355666666544 3467788889999999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002441 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (921)
Q Consensus 222 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 300 (921)
|..+.....+|.+.++.|+.+.|..+|++.-+........ ....
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-----------------------------------q~~~ 252 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-----------------------------------QGKI 252 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-----------------------------------chhH
Confidence 6678888999999999999999999998765332211100 0112
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002441 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 367 (921)
.+..+.+.++.-.+++.+|...+.+++..++.++.+.++.|.|+...|+...|++.++.++...|..
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2344555566666677777777777777777777777777777777777777777777777776653
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.14 E-value=0.042 Score=65.60 Aligned_cols=410 Identities=15% Similarity=0.060 Sum_probs=242.8
Q ss_pred cchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---C
Q 002441 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (921)
Q Consensus 46 ~~~~~~l~~A~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (921)
.++...+.+|.+++ ...++++|...+++++..... -. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 47888999999998 678999999999999876533 22 34566788888888777 99999999987544 2
Q ss_pred HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--
Q 002441 116 AC-AHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-- 188 (921)
Q Consensus 116 ~~-a~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 188 (921)
.. ..+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++.++++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 22 22222 2333334799999999999988764 33322 223344445666777888888888887744311
Q ss_pred ----C----CHHHHHHHH--HHHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 002441 189 ----H----YAPAYYNLG--VVYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (921)
Q Consensus 189 ----~----~~~~~~~la--~~~~~~g~~~~A~~~~~~a---l~~---~p---~---~---------------------- 224 (921)
+ ...++..+- .++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 1 133344333 3455677777776665554 221 11 0 0
Q ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-----------------HHH--HHHHHHHHhhhhhhh
Q 002441 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (921)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~--~~la~~~~~lg~~~~ 277 (921)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++..++....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11334445666777777789888888876422211 111 112333445556666
Q ss_pred hcCCHHHHHHHHHHHHHhCC---C------CHHHHHHHHHHHHHcCChHHHHHHHH--------HHHhhCCCC---HHHH
Q 002441 278 LEGDINQGVAYYKKALYYNW---H------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~---~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~~~ 337 (921)
..+++.+|....+.+..... . .+..++..|..+...|+.+.|...|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 78899999988887775532 2 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhC-C--CC--
Q 002441 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (921)
Q Consensus 338 ~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~l~~al~~~-p--~~-- 401 (921)
.++..++...+.-.. +.+.+++.-....+.+. ++..+-.++. ..-...++...+.++++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566667666554333 33333332221111111 2222222221 1223457777777777654 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hhhHhhH----HHHhhhccCCChHHHHHH
Q 002441 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFEA 460 (921)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~~----l~a~~~~~~~~~~~~~~~ 460 (921)
.-++..++..+. .|+..+..+...++..+.... ....+.. ++...+-..|+.+++-..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 234555666666 788888777777776654443 4443322 122224556666655443
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0011 Score=65.28 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230 (921)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 230 (921)
+..|..-+..+...+++++|...+.++.+-..++ +.++-..+.+..+...+.++..+++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------ 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------ 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------
Confidence 4445555666666677777777777766443332 2223333444444444444444444442
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 002441 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMY 304 (921)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 304 (921)
..|.+.|..+.|...++++-+.-. ..+.++|+++|++++.+-... .+.+.
T Consensus 99 --~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 334444555555444444433221 235566666666655442221 12334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002441 305 NLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (921)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (921)
..+.++.+..++++|-..+.+-... .++.-..+.....++....+|..|.++++...+
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 4455555555555555544443221 112222233333333444455555555555443
No 302
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.00079 Score=63.46 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=104.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHHHHHHcCC
Q 002441 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGN 172 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~ 172 (921)
+.=+.+.......+.+...|.. .-.+.+|..+...|++.+|...|++++.- ...+.. ++..+++..+..++
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~ 139 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQE 139 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhcc
Confidence 3334455555555555555543 34567788888888888888888887753 222222 35566667777788
Q ss_pred hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002441 173 TQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
+..|...+++..+.+|. .++....+|..+...|++.+|...|+.++...|. +.+....+..+.++|+..+|...+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 88888888888877765 4666777888888888888888888888888776 66777778888888887777766555
Q ss_pred HHH
Q 002441 251 CLA 253 (921)
Q Consensus 251 al~ 253 (921)
..+
T Consensus 219 v~d 221 (251)
T COG4700 219 VVD 221 (251)
T ss_pred HHH
Confidence 443
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.09 E-value=0.034 Score=62.42 Aligned_cols=380 Identities=12% Similarity=-0.005 Sum_probs=246.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 002441 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI-LYKDEGRLVEAAESYHK 141 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~ 141 (921)
..+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++.--|-....|..+-. +-...|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34667778888898999999999999999999999999999999999999988887765543 33456778888888999
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHH
Q 002441 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------LMQYDTALGCYE 215 (921)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~ 215 (921)
|......+-.+. ..+-..-.....++++..-...|++.++.--.....++..=.-+.+ +...+++...-.
T Consensus 140 A~~~vG~dF~S~----~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSD----PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhcc----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 888765533221 1122222333556778888888888877533322222221111111 112233222222
Q ss_pred HHHHh---------------------CC--CCHHHHHHHH-------HHHHHCCCHHHHHHHHHHHHHh-----CCChHH
Q 002441 216 KAALE---------------------RP--MYAEAYCNMG-------VIYKNRGDLESAIACYERCLAV-----SPNFEI 260 (921)
Q Consensus 216 ~al~~---------------------~p--~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 260 (921)
..... .| ........+. .++.......+.+..++..++. .|-+..
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 22110 00 0001111111 1222222333344444444332 122111
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHH
Q 002441 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNN 339 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 339 (921)
. + ..+..........|+++.....|++++--.....+.|...+......|+.+-|...+..+.++ .+..+.+...
T Consensus 296 q---l-~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 296 Q---L-KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred H---H-HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 1 1 112222233445789999999999999888888999999999999999999999999988887 4667888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHHHHHH-H
Q 002441 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-Y 412 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~l~~al~~~p~~---~~~~~~la~~-~ 412 (921)
-+......|++..|...+++..+..|+...+-.........+|+.+.+.. ++.....-..+. ...+...+.. +
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 88888999999999999999998889988888888888888999988884 333332221111 2334444444 3
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhcc
Q 002441 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (921)
Q Consensus 413 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~ 450 (921)
.-.++.+.|...+.++++..|++...+........+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44678999999999999999999877666544333333
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00048 Score=67.76 Aligned_cols=197 Identities=22% Similarity=0.177 Sum_probs=108.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308 (921)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 308 (921)
..-+..|...+++++|..++.++.+-..++. .++.-+..+...+.+......+.++..+++++. .
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs--------------~ 99 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS--------------E 99 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------H
Confidence 3334555555666666666666654443332 233334444444444444556666666666654 3
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC
Q 002441 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQG 382 (921)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 382 (921)
.|.+.|..+.|-..++++-+. .+..+.++|+++|++++.+-... .+.+...+.++.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 455555555555555554332 23345666666666666553221 234555666777777
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCChhhHhhHHHHhhhccCC
Q 002441 383 KMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINEG 452 (921)
Q Consensus 383 ~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~~l~a~~~~~~~ 452 (921)
++++|-..+.+-... .++....+.....+|....+|..|..+|+...++ .|++..+..|++- ....+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~g 241 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDEG 241 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---HhccC
Confidence 777776666554332 2333445555556666667888888888877664 3444555555433 23556
Q ss_pred ChHHHH
Q 002441 453 HDDKLF 458 (921)
Q Consensus 453 ~~~~~~ 458 (921)
+.++.-
T Consensus 242 D~E~~~ 247 (308)
T KOG1585|consen 242 DIEEIK 247 (308)
T ss_pred CHHHHH
Confidence 655443
No 305
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00021 Score=63.11 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la 123 (921)
...+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+..+|+.++|++.+++++++.-.. -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34566678899999999999999999999999999999999999999999999999999999985443 35788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
.+|...|+.+.|...|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999998876553
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.04 E-value=0.03 Score=62.91 Aligned_cols=319 Identities=9% Similarity=-0.056 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHH
Q 002441 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (921)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 178 (921)
+.+...|...+...|..-..|...|..-.+.|..+.+.+.|++++.--|-..+.|..+ +..+-...|+.+.-..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y------~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY------LAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH------HHHHhccCCCHHHHHH
Confidence 6677778888888999999999999999999999999999999999988766554332 2222235677777778
Q ss_pred HHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------CCCHHHHHHHHH
Q 002441 179 KYYEALKIDPH---YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN------RGDLESAIACYE 249 (921)
Q Consensus 179 ~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~ 249 (921)
.|++|...... ....|-..-..-..++++..-...|++.++.--.....++..=.-+.+ +-..+++...-.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 88888876443 244555555555778888888889988887643322222221111111 112222222221
Q ss_pred HHHH-----------------------hCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh-----CCC---
Q 002441 250 RCLA-----------------------VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----NWH--- 298 (921)
Q Consensus 250 ~al~-----------------------~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~--- 298 (921)
.... ..+........+.......-.++.......+.+..++..++. .|.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 1111 011111111111112211222233333334444444444432 222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 002441 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVV 377 (921)
Q Consensus 299 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 377 (921)
....|......-...|+++.....|++++--.....+.|...+......|+.+-|...+..+.++. |..+.+...-+..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 234566777777889999999999999998888889999999999999999999999999988874 6667788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002441 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (921)
-...|++..|...+++..+..|+..++-...+....++|+.+.+..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 8889999999999999999889999988888899999999998884
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=3.7e-05 Score=72.58 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002441 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD---KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (921)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 392 (921)
|+.|.+.++.....+|.+++.+++.|.++..+.++. ++.+ -+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 556666666666666666666666666665543221 1111 1233444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
+++.++|+..++++.+|.+|..++ .+++|.++|++|.+.+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 445555555555555555544432 36788999999999999987666554
No 308
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.03 E-value=0.0042 Score=71.04 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH-H------HHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 278 LEGDINQGVAYYKKALYYNWHYAD-A------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~-~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (921)
-.|+-+.++..+.++.+...-... + |+.....+. .....+.|.+.++...+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 468999999999998763221111 1 111111111 24467889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH---
Q 002441 347 RDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI--- 418 (921)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~--- 418 (921)
.|+.++|++.|++++...... .-.++.+++++..+.+|++|.+++.+..+.+.-. +-..+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543332 2367889999999999999999999999875543 44567788999999999
Q ss_pred ----HHHHHHHHHHhhc
Q 002441 419 ----SLAIDAYEQCLKI 431 (921)
Q Consensus 419 ----~~A~~~~~~al~l 431 (921)
++|.++|+++-.+
T Consensus 360 ~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 7777777766443
No 309
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.03 E-value=8.9e-06 Score=68.13 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 114 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
+-..++..+|.+|..+|++++|+.+|++++++.....+....++.++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999998743333344456778888888888888888888888888764
No 310
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.02 E-value=0.0025 Score=72.85 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=123.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhh--hh-h--hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT--KV-K--LEGDINQGVAYYKKALYYNWHYADAMYN 305 (921)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~--~~-~--~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (921)
+-.+.--.|+-+.+++.+.++.+ ..+-......+....+...- .. . .....+.|.++++...+..|+..-.++.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33344456899999999999877 33322222222222111111 11 1 3567899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 002441 306 LGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTV 380 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 380 (921)
.|.++...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. .-..+..|.++..
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999999999999998853222 24567899999999999999999999999876543 3455677888999
Q ss_pred cCCH-------HHHHHHHHHHHHh
Q 002441 381 QGKM-------DAAAEMIEKAIAA 397 (921)
Q Consensus 381 ~g~~-------~~A~~~l~~al~~ 397 (921)
.++. ++|.+++.++-.+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 9998 7777777776544
No 311
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.0031 Score=70.81 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
.++++..++..+...|++++|-+.|-++++++.-+
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 35677888888888888888888888888877544
No 312
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00027 Score=77.78 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=122.5
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002441 660 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 660 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
+.+.++++ ..|..+.+++....+....|+..+++.|.+... ...+...+.+.+.. +.|.|.|.++ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGLE-DNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCCC-CcEEEecccC-HHHHHHHH
Confidence 34445544 368888999999998888888888888765322 34455566676764 7899988876 35666678
Q ss_pred ccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC-CHHHHHHHHHHHhcCHHHHH
Q 002441 738 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 738 ~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~-~~~~y~~~a~~l~~d~~~~~ 813 (921)
..+|+++-|+.+ +.|.+++|||++|+|||+ ++++ ..++..-+..-++.. +.++.......+..+.+...
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-------~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 347 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIA-------SDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELRE 347 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEE-------CCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHH
Confidence 889999999876 777889999999999997 4443 112222210113333 57999999999999986666
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 814 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 814 ~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
.+....++... ..|++..++..+.+.|.....
T Consensus 348 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 348 ELGEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 77664444443 458999999888888876543
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.97 E-value=0.041 Score=65.72 Aligned_cols=318 Identities=13% Similarity=0.035 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Q 002441 64 FVDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRL 132 (921)
Q Consensus 64 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~ 132 (921)
...|+++++-+++..+- .+.+.+.+|.+++ ...++++|..++++++.+...+ ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567777777753222 3467888999887 7899999999999998876432 23456678888888877
Q ss_pred HHHHHHHHHHHhcCCCChHh-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcC
Q 002441 133 VEAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELM 205 (921)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~-~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g 205 (921)
. |...+++.++........ +...-. +. ........+++..|++.++...... ..++.+ ....+.+....+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~fr-ll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFR-LL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHH-HH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence 7 999999999876552222 111111 11 1222222379999999999988775 244332 333466677778
Q ss_pred CHHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHCCCHHHHHHHHHHH---HHhCCChH-----------
Q 002441 206 QYDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE----------- 259 (921)
Q Consensus 206 ~~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~p~~~----------- 259 (921)
..+++++.++++..... ....++..+-. ++...|+++.+...+++. ++...+..
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i 273 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSI 273 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeE
Confidence 88888888888744221 12334444433 345667766666554433 32211110
Q ss_pred ---------------------HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCC-------------------
Q 002441 260 ---------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------------------- 299 (921)
Q Consensus 260 ---------------------~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------------- 299 (921)
......+.+|.--|......+..++|.++++++++.-.+.
T Consensus 274 ~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~ 353 (608)
T PF10345_consen 274 PLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERI 353 (608)
T ss_pred EeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhH
Confidence 0011122333333444445566667777777776431110
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH-----
Q 002441 300 -------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ----- 358 (921)
Q Consensus 300 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~----- 358 (921)
....+..+.+..-.+++.+|....+.+.... |. .+..++..|..+...|+.+.|+.+|.
T Consensus 354 ~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~ 433 (608)
T PF10345_consen 354 QWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFL 433 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHh
Confidence 0124455666677888888888887776542 21 36677888888888888988988887
Q ss_pred ---HHHhhCCCCH---HHHHHHHHHHHHcCCH
Q 002441 359 ---MALSIKPNFS---QSLNNLGVVYTVQGKM 384 (921)
Q Consensus 359 ---~al~~~p~~~---~~~~~la~~~~~~g~~ 384 (921)
.+....+... -+..++..++...+.-
T Consensus 434 ~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 434 LCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred hhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 3333333322 2445666666655543
No 314
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.96 E-value=1.1e-05 Score=67.46 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002441 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
|+...++.++|.+|..+|++++|+.+|++++++..........++.++..+|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34467889999999999999999999999997732222233345666677777777777777777777766653
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.94 E-value=0.012 Score=62.56 Aligned_cols=131 Identities=21% Similarity=0.087 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 002441 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H------- 189 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 189 (921)
...+|+++.|..++.|+-... ..++.....++.++++.|......+ ++++|...++++.+. .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999997766 5566777789999999999999999 999999999999887 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002441 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1456778889998887754 455566666667788788876666677678889999999998887644
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.93 E-value=9.8e-05 Score=69.82 Aligned_cols=110 Identities=25% Similarity=0.242 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-
Q 002441 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF- 316 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~- 316 (921)
++.|.+.++.....+|.+.+.+.+-+.++..++.... ...-+++|+.-|++++.++|+..++++++|.+|...+.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4555556666666666666666666666665554422 223567888888889999999999999999888766531
Q ss_pred ---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002441 317 ---DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (921)
Q Consensus 317 ---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (921)
.+|. ..|++|..+|++|...+|++......|..+
T Consensus 87 ~d~~~A~---------------------------~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAE---------------------------EYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHH---------------------------HHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHH---------------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1111 124556666777777777665555544443
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.92 E-value=0.0017 Score=70.78 Aligned_cols=188 Identities=16% Similarity=0.101 Sum_probs=110.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 133 (921)
.....-+..+.++-++.-+++++.+|+.+.+|..++.- ......+|.++|+++++...... .........|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence 34444566777777888888888888777777777653 23345677777777766432110 0001111111111
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 002441 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTAL 211 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~ 211 (921)
+ .+.....+. +..+-..++.+..+.|+.++|++.++..++.+|. +..++.+|..++...+.|.++.
T Consensus 248 e-------~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 248 E-------AWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred h-------hhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 1 111111111 1223456778888888888888888888877665 4567888888888888888888
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHC-CC---------------HHHHHHHHHHHHHhCCChH
Q 002441 212 GCYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFE 259 (921)
Q Consensus 212 ~~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~ 259 (921)
..+.+.-++ -|+.....+..+.+..+. ++ -..|.+.+.+|++.+|.-+
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 888875433 245555555555443221 11 1235566777777777654
No 318
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.3e-05 Score=75.53 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=95.6
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 45 ~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
+.....+-..|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+...+++.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 34667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 002441 125 LYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~ 145 (921)
.......+++|+..+.++..+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999665
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.88 E-value=0.011 Score=65.75 Aligned_cols=293 Identities=13% Similarity=0.079 Sum_probs=148.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 002441 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------PQNACAHTHCGILY 126 (921)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~ 126 (921)
+.+....|+++.-.+..... ..+..+..+..+......++++++....+++...- +......+..-..+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56677788888833332222 22234667777777778899998888888876541 11111111111112
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHhh----CCCCHHHHHHHHHH
Q 002441 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLGVV 200 (921)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~ 200 (921)
....+.+++..+....... ......+...+...-.. ...+++ +-+-.++..+-. .......+...+.+
T Consensus 82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2223333333333211100 11111111111111000 011111 111111222211 34457788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH-H--HHHHHHHHHHhhh
Q 002441 201 YSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-I--AKNNMAIALTDLG 273 (921)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~la~~~~~lg 273 (921)
..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+....... . ....+...+..
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE-- 233 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--
Confidence 9999999999999999887542 2567888899999999999999999988887211110 0 00000000000
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (921)
.............. ......++..+|...... +..+++...|.++.+.+|....++..+|..+...
T Consensus 234 ---~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 234 ---SLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ---ccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000000000000 000123444455554444 5566666666666666666666666555554332
Q ss_pred -----------------CCHHHHHHHHHHHHhhCCC
Q 002441 348 -----------------DNLDKAVECYQMALSIKPN 366 (921)
Q Consensus 348 -----------------g~~~~A~~~~~~al~~~p~ 366 (921)
.-...|+..|-+++...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 306 LESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1124588899999988877
No 320
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.009 Score=61.61 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHhHHHHHHHHH
Q 002441 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 161 (921)
+-....+......|+..+|-..+++.++..|.+.-++..--.+++.+|+...-...+++++.. +++.+-. ..+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHH
Confidence 444556667788899999999999999999999988888888999999999999999999877 6654432 22334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (921)
.++-.+...|-+++|.+.-++++++++.+..+...++.++...|++.++.+...+.-..-... ..-|...+.++.+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 455667788999999999999999999999999999999999999999999988754322211 2235566888889
Q ss_pred CCCHHHHHHHHHHHH
Q 002441 238 RGDLESAIACYERCL 252 (921)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (921)
.+.|+.|++.|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998654
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=0.012 Score=69.14 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHH
Q 002441 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA 421 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A 421 (921)
+...+...+.++.. ..+..+...+|.+|+.- .+++.|...|.++.... +...+++|.++..- ..+..|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44455555555433 34566677777776653 35777888887777766 77777888777641 126778
Q ss_pred HHHHHHHhhcCCCC
Q 002441 422 IDAYEQCLKIDPDS 435 (921)
Q Consensus 422 ~~~~~~al~l~P~~ 435 (921)
..+|.++.+.+.+.
T Consensus 529 ~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 529 KRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHhcCchh
Confidence 88888777766543
No 322
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.025 Score=66.25 Aligned_cols=280 Identities=17% Similarity=0.134 Sum_probs=142.4
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChH
Q 002441 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (921)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (921)
.++.+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ -+|. . |........+.|.|+
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika--dDps---~-------y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS---N-------YLEVIDVASRTGKYE 1150 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH---H-------HHHHHHHHHhcCcHH
Confidence 34444444444433 34556666666666666666666666544 1222 1 344444445556666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 002441 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (921)
+-+.++.-+-+... .+.+-..|...|.+.++..+-.+.+ ..|+.+. ....|.-.+..+.|+.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v--- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV--- 1220 (1666)
T ss_pred HHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh---
Confidence 66665555443311 1112223333444455544433322 1233322 234455555556666555554432
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002441 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (921)
Q Consensus 255 ~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 334 (921)
..+..++..+..+ |+|+.|.+..+++ ++...|...+.++...+.+.-|.-+=-.. --++
T Consensus 1221 -----SN~a~La~TLV~L-------geyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivha 1279 (1666)
T KOG0985|consen 1221 -----SNFAKLASTLVYL-------GEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNI----IVHA 1279 (1666)
T ss_pred -----hhHHHHHHHHHHH-------HHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceE----EEeh
Confidence 1222333333333 3666666655554 23445555555555555544432211000 0124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Q 002441 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYN 406 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~ 406 (921)
+-+-.+...|...|-+++-+..++.++.+...+-..+..||.+|.+- ++++-.+.++-.... .-+.+..|.
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWS 1358 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44556777788888888888888888888777777777777777654 455555554433221 112244566
Q ss_pred HHHHHHHHcCCHHHHHH
Q 002441 407 NLGVLYRDAGSISLAID 423 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~ 423 (921)
.+..+|.+-..|+.|.-
T Consensus 1359 ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1359 ELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHhhhhhhHHHH
Confidence 66666666666665543
No 323
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.79 E-value=0.00066 Score=76.68 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
+..++|.++.+.....+..++...+.+...|--.++..+.+.. ...+ . .+ +++|.+.+.++ ..+ .
T Consensus 224 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~----~--~~-~~~v~~~~~~p-~~~---l 288 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADL----G--EL-PPNVEVRQWVP-QLE---I 288 (392)
T ss_pred CCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHh----c--cC-CCCeEEeCCCC-HHH---H
Confidence 4557788888877777777776777777676545555443311 1111 1 13 47888888876 333 4
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHHHH
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+..||+++- .+|..|++|||.+|+|+|.++...- ...-+..+...|....+- -+.++..+...++.+|++.++
T Consensus 289 l~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 289 LKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAE 364 (392)
T ss_pred HhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 556999992 4666799999999999999885432 333445566678765553 256777777778889987665
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002441 814 NLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 814 ~~r~~~~~~~~~~~l~~~~~~~~~~e~~~ 842 (921)
.+ +.+++.+... ......+..+|+.+
T Consensus 365 ~~-~~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 365 RL-RKMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HH-HHHHHHHHHc--CCHHHHHHHHHHhh
Confidence 55 3444444432 24556666666543
No 324
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00049 Score=73.23 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (921)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (921)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+... .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466666777777778999999999986666678888888988777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q 002441 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (921)
Q Consensus 381 ~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 436 (921)
.|+.+.|...|++++..-|... .+|......-.+.|+.+.....++++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866544 5788888888899999999999999999988843
No 325
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0016 Score=67.00 Aligned_cols=152 Identities=13% Similarity=-0.041 Sum_probs=117.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 002441 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKA 353 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A 353 (921)
..|++.+|....++.++..|.+.-++..--.+++.+|+.+.-...+++++.. +++. ..+.-.++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3577778888888888888888777777777888888888888888888876 5554 44555677778888899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002441 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (921)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (921)
.+..++++++++.+..+...++.++...|+++++.+...+.-..-... ..-|...|.++.+.+.|+.|++.|.+-+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999888888888888988999998888877653332111 2235567778888889999999887654
No 326
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=97.75 E-value=8.6e-05 Score=84.00 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=72.1
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCC----cccc--------cCCHHHH
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDEY 798 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl----~~~i--------a~~~~~y 798 (921)
++...+..||+++=|+.| +.|.|.+|||+||+||||-....|.. .+-...|- .-+| ..+.++.
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~----~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC----FMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh----hhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 466667889999999988 55999999999999999843332211 11111111 1122 3456777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 799 VQLALQLASDVTALANLRMSLR-DLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 799 ~~~a~~l~~d~~~~~~~r~~~~-~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
.+...++++. +.++.+.++-+ ++. +..|+++.++..+.+||..+.+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~r~--s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTERL--SDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHhh
Confidence 7777777754 44454444433 222 5679999999999999987654
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.75 E-value=0.018 Score=67.61 Aligned_cols=176 Identities=23% Similarity=0.228 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 002441 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--- 130 (921)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g--- 130 (921)
..+|.++++.+-+. .+..+...+|.++..- .+.+.|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888887654 5778888899888754 5889999999998771 1125567888888888743
Q ss_pred --CHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-
Q 002441 131 --RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL- 204 (921)
Q Consensus 131 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 204 (921)
+...|..+|.++-+....+ + .+.+|.++.... +...|.++|..+.+. .+..+.+.++.+|..-
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 6778999998887765433 3 344555554433 567888888888754 4677888888888753
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh
Q 002441 205 ---MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (921)
Q Consensus 205 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (921)
.+...|..+++++.+.. .+.+...++..+... ++++.+...+....+.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 56888999999888876 455555555554433 6666666655554443
No 328
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00048 Score=67.68 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
....+.|++.|+...|+|-++++.....+..+|.+..+++..|.+....=+.++|...|.++|+++|.-..+...-
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999999876665543
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.73 E-value=0.026 Score=62.61 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C----
Q 002441 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N---- 366 (921)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~---- 366 (921)
......+...+.+..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..++. .. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34566788899999999999999999998887642 24678888899999999999999988888771 00 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 367 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (921)
Q Consensus 367 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 412 (921)
.+.++..+|...... +..+++.+.|+++++.+|+...+++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123556666666666 7788888889999988888888888888777
Q ss_pred HHcCCH-----------------HHHHHHHHHHhhcCCC
Q 002441 413 RDAGSI-----------------SLAIDAYEQCLKIDPD 434 (921)
Q Consensus 413 ~~~g~~-----------------~~A~~~~~~al~l~P~ 434 (921)
...=+. ..|+..|-+++.+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 554211 2366666666666665
No 330
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=97.73 E-value=0.00081 Score=75.62 Aligned_cols=220 Identities=10% Similarity=0.117 Sum_probs=129.9
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcC-CCceEEeeccCCCCCCCC-CccEEEe-----cCCCCCCCc-----ccCc--c
Q 002441 562 VREDKIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGLP-TIDYRIT-----DSLADPPET-----KQKH--V 627 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r-~APvQ~~~~G~p~ttG~~-~~Dy~i~-----d~~~~p~~~-----~~~~--~ 627 (921)
+..+.-+|+|. +..+.-+.++.++ ||+.=+ +|.-|.++-++ .|.|.+. |.++.|-.. ...+ .
T Consensus 186 l~~~~~~i~i~---~l~~~~~~~~~~~~~~~~~l-~~qe~~~~~l~~ny~~~l~~~~~~~~iIv~T~~q~~di~~r~~~~ 261 (438)
T TIGR02919 186 LEINLSHIFIN---SLSTPFLVSYGLPEDGSDVL-FWQEPITDDIPGNMKLLLDNETRNKKIIIPNKNEYEKIKELLDNE 261 (438)
T ss_pred hcCCCCCEEEE---ecCchHHHHhhcCCCCceEE-EEeCccCCcCchHHHHHhcCccccCeEEeCCHHHHHHHHHHhCcc
Confidence 33556677776 2332222444443 454434 44666544444 2333331 223333211 1112 3
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 002441 628 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707 (921)
Q Consensus 628 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 707 (921)
+++...|..++ |.++. ....+...++++ +...+..+.++.+++|+..|-|.... ....+|
T Consensus 262 ~~~~~ip~g~i-~~~~~-------~~r~~~~~l~~t--------~s~~I~~i~~Lv~~lPd~~f~Iga~t----e~s~kL 321 (438)
T TIGR02919 262 YQEQISQLGYL-YPFKK-------DNKYRKQALILT--------NSDQIEHLEEIVQALPDYHFHIAALT----EMSSKL 321 (438)
T ss_pred cCceEEEEEEE-Eeecc-------ccCCcccEEEEC--------CHHHHHHHHHHHHhCCCcEEEEEecC----cccHHH
Confidence 45666776655 43211 111233445555 28999999999999999999993222 223566
Q ss_pred HHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCC-CcccHHHHhhcCCcEEecCCCcccccchhHHHhhcC
Q 002441 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA-GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 786 (921)
Q Consensus 708 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~-g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g 786 (921)
.+. .+. .+-+.+-+.. +.+.-..|..||++||+.... .+.+..||+..|+|||+..-..+...... .
T Consensus 322 ~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~------~ 389 (438)
T TIGR02919 322 MSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA------S 389 (438)
T ss_pred HHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc------C
Confidence 655 555 3445554433 346778999999999999984 47799999999999998654432222110 0
Q ss_pred Ccccc-cCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002441 787 LKHLI-AKNEDEYVQLALQLASDVTALANLRMS 818 (921)
Q Consensus 787 l~~~i-a~~~~~y~~~a~~l~~d~~~~~~~r~~ 818 (921)
..++ ..+.++++++.+.+.+|++.++..-.+
T Consensus 390 -g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~ 421 (438)
T TIGR02919 390 -ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQ 421 (438)
T ss_pred -CceecCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222 468899999999999999655544433
No 331
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=7.2e-05 Score=73.20 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=63.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
-|..++...+|..|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34455555666677777777777777766777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhc
Q 002441 420 LAIDAYEQCLKI 431 (921)
Q Consensus 420 ~A~~~~~~al~l 431 (921)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777777776544
No 332
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.70 E-value=0.00039 Score=77.98 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=93.1
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------CEEEccCcCCcHHHHH
Q 002441 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQ 735 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~ 735 (921)
.+.-|.++++..++.+. |+.++++...+. ...+.+.+.+.+.|+... .+.+.+. ..+...
T Consensus 220 ~~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~ 292 (396)
T TIGR03492 220 YRNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAE 292 (396)
T ss_pred HccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHH
Confidence 34456888887777665 777777654221 223445555666676532 2444433 345667
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhc----CCcccc-cCCHHHHHHHHHHHhcCHH
Q 002441 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHLI-AKNEDEYVQLALQLASDVT 810 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~----gl~~~i-a~~~~~y~~~a~~l~~d~~ 810 (921)
.|+.||++|-. .||+|.|++.+|+|+|..+++.+ ...+.++... |-...+ -.+.+...+...+|..|++
T Consensus 293 ~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 293 ILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 78889999955 55666999999999999996533 2355555542 433333 4556888888889999998
Q ss_pred HHHHHHHHHHHHh
Q 002441 811 ALANLRMSLRDLM 823 (921)
Q Consensus 811 ~~~~~r~~~~~~~ 823 (921)
.+.++++..+.++
T Consensus 367 ~~~~~~~~~~~~l 379 (396)
T TIGR03492 367 LLERCRRNGQERM 379 (396)
T ss_pred HHHHHHHHHHHhc
Confidence 8888876555554
No 333
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.13 Score=60.72 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 002441 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (921)
+.+.+|..+|....+.|...+|++.|-++ +++..|.....+..+.|+|++-+.++..+-+...+.. ....+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHH
Confidence 34667777777777777777777777664 5566777777777777777777777776665433211 11112222
Q ss_pred HHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 269 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
|.. .++..+-.+.. ..|+.+ -....|.-++..+.|+.|.-+|.. ..-|..++..+...|
T Consensus 1176 yAk-------t~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1176 YAK-------TNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLG 1234 (1666)
T ss_pred HHH-------hchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHH
Confidence 222 22333322221 123322 234556666777777777666653 334566777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (921)
+|..|...-++| ++...|-..+.++...+++.-|.-+=-..+ -.++-+-.+...|...|-+++-+..++.+
T Consensus 1235 eyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 777777777766 334455555555555444443321110000 11344555666677777777777777777
Q ss_pred hhcCCCC
Q 002441 429 LKIDPDS 435 (921)
Q Consensus 429 l~l~P~~ 435 (921)
+-+.--+
T Consensus 1306 LGLERAH 1312 (1666)
T KOG0985|consen 1306 LGLERAH 1312 (1666)
T ss_pred hchhHHH
Confidence 6665433
No 334
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.69 E-value=0.002 Score=72.27 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=106.3
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 655 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 655 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
..+..++|-++.+..=. .+++....+.+...|..+++-.+. . . . ...++ ++.+...+.++ ..+
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~-~----~------~~~~~-p~n~~v~~~~p-~~~-- 296 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A-R----D------TLVNV-PDNVIVADYVP-QLE-- 296 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-c----c------ccccC-CCceEEecCCC-HHH--
Confidence 34456667776655422 677777777777776555444432 1 0 0 11234 47888888876 344
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHH
Q 002441 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~ 811 (921)
.+..||+++ ..+|++||+|||..|||+|.+|.. +-.-.-|.-+..+|....+- .+.+.-.+...++.+|...
T Consensus 297 -~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 297 -LLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred -HhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 555599999 247788999999999999999976 33333566677889987775 5667777777777777766
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 812 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
++..+ ++.+.+... ...+..+.-+|+..++
T Consensus 372 ~~~~~-~~~~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAE-RLAEEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHH-HHHHHhhhc--ccHHHHHHHHHHHHhc
Confidence 55544 444444333 3355677777776643
No 335
>PLN02670 transferase, transferring glycosyl groups
Probab=97.68 E-value=0.0013 Score=74.70 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=108.8
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
.-|+|-||.+...++++-++-.+.-|.+.|...||.+..+... +.+.+.+.++....| +++.++.| +.+
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~~ 351 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QVK 351 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HHH
Confidence 4588999999999999999999999999999999987642111 112234444433322 56667877 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc-------CCHHHHHHHHH
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLAL 803 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia-------~~~~~y~~~a~ 803 (921)
.|+ ...+..|+ ..+|-+|++||+++|||+|++| ++.+ .-+.++...|+.--+. -+.++-.+...
T Consensus 352 IL~-H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILS-HESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQG---LNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVR 424 (472)
T ss_pred Hhc-Ccccceee---ecCCcchHHHHHHcCCCEEeCcchhccH---HHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHH
Confidence 442 23344465 2588889999999999999998 3432 2333445556654332 25667777777
Q ss_pred HHhcCHHHHHHHHHH---HHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002441 804 QLASDVTALANLRMS---LRDLMSKSPVCDGQNFALGLESTYRNM 845 (921)
Q Consensus 804 ~l~~d~~~~~~~r~~---~~~~~~~~~l~~~~~~~~~~e~~~~~~ 845 (921)
++..|++ -..+|++ +++.+... -.....+..+++.+..+
T Consensus 425 ~vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 425 LAMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HHhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 7766642 1233333 33444333 34677777777776543
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.67 E-value=0.0083 Score=66.15 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (921)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (921)
+..|..+...|+...|+.++..++...|.. .....+++.++.+.|-.-.|-.++.+++.+....+-.++.+|.++..+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 334455567899999999999999988865 3457789999999999999999999999999888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 383 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
+.+.|++.+++|++++|+++.+-..|-.+-.
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999888777666555
No 337
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.66 E-value=0.0038 Score=68.22 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 002441 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY 412 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~ 412 (921)
+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++..++.|.++...+.+.-+. -|..+...+..|.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3445666666777777777777777666554 3446667777777777777776666664332 244455555444433
Q ss_pred HH-------------cC---CHHHHHHHHHHHhhcCCCChhh
Q 002441 413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 413 ~~-------------~g---~~~~A~~~~~~al~l~P~~~~a 438 (921)
.+ .| -...|++...+|++.+|.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22 11 1234788999999999987654
No 338
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.63 E-value=8.3e-05 Score=80.51 Aligned_cols=110 Identities=18% Similarity=0.118 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
++.+-..|..++..+.|+.|+..|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34555678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHH
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPAAECLA 157 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (921)
..+++.+|...|++...+.|+.+.+...+.
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 999999999999999999999988754433
No 339
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.59 E-value=0.00043 Score=59.98 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=64.1
Q ss_pred EEecCCCCCC-cccHHHHhhcCCcEEecCCCcccccc-hhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002441 742 ISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNV-GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 819 (921)
Q Consensus 742 ~~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~-~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~ 819 (921)
|+|.|..++| +...+|+|++|+|||+ .+. +..-+-.-|..-+...|.++.+++...|.+|++.++.++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~-------~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVIS-------DDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEE-------CChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3555555544 4589999999999998 333 111111114445667899999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHH
Q 002441 820 RDLMSKSPVCDGQNFALGL 838 (921)
Q Consensus 820 ~~~~~~~~l~~~~~~~~~~ 838 (921)
++.+.+. +++...+..+
T Consensus 74 ~~~v~~~--~t~~~~~~~i 90 (92)
T PF13524_consen 74 RERVLKR--HTWEHRAEQI 90 (92)
T ss_pred HHHHHHh--CCHHHHHHHH
Confidence 9998755 6777666554
No 340
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00096 Score=65.61 Aligned_cols=110 Identities=18% Similarity=0.099 Sum_probs=96.3
Q ss_pred cCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHhCCHHHHHHH
Q 002441 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFDS 104 (921)
Q Consensus 43 ~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~ 104 (921)
.+-.....+...|+.++..|+|.+|...|..++. ..|.++ ..+.+++.|+...|+|-++++.
T Consensus 173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 3444567788899999999999999999998864 245443 4678999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHh
Q 002441 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (921)
Q Consensus 105 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (921)
...++..+|.+..+++..|.+....-+..+|...|.++++++|.-..+
T Consensus 253 ~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 253 CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999999975443
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.57 E-value=0.31 Score=57.47 Aligned_cols=301 Identities=13% Similarity=-0.051 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QNACAHTH 121 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~ 121 (921)
.+....-+.-+...|...+|+...-.+ .+|..+ ...-..+.-++..++.. .+..+++.-| +++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 455666677788889999998875554 233322 23333455555555543 3334444444 35666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (921)
.+.......++.+|..++.++...-+. .......++......|.+....|++++|++..+.++..-|.+ ..++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 888899999999999999988765443 333334455666667788888999999999999999886654 5567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh----CCChHHHH
Q 002441 195 YNLGVVYSELMQYDTALGCYEKAALERPM----Y--AEAYCNMGVIYKNRGD--LESAIACYERCLAV----SPNFEIAK 262 (921)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~--~~~A~~~~~~al~~----~p~~~~~~ 262 (921)
..+|.+..-.|++++|..+...+.+.... . ..+.+..+.++..+|+ +.+....|...-.. .|-.....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 78899999999999999999998776322 2 2344555778888883 33333333332222 22221111
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 002441 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHY--AD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-- 333 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 333 (921)
...+.++.. +. +++.+..-..+.++. .|.. .. .++.++.++...|++++|...+.+....-.+.
T Consensus 581 ~~r~~ll~~----~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 581 RIRAQLLRA----WL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHHHHHH----HH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 111111111 11 233333333333322 2222 11 33578999999999999999888877653222
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 334 -----AEACNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 334 -----~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
..++.........+|+..+|.....+..
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1122222333456788888888877743
No 342
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.57 E-value=0.019 Score=62.23 Aligned_cols=191 Identities=14% Similarity=0.055 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHH-HHhCCChHHH
Q 002441 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERC-LAVSPNFEIA 261 (921)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 261 (921)
.+++..++-..|....+|+.-++..+..-.. -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887665 45567788889999988 89999999999994 4455666777
Q ss_pred HHHHHHHHHhhhhh--hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002441 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339 (921)
Q Consensus 262 ~~~la~~~~~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 339 (921)
+...+.+|..+-.. .......++|+..|.++.+.+++. ..-.+++.++...|...+....+++.. ..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~ 288 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VK 288 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HH
Confidence 77777777665332 122334777888888887777543 333445555555554333222222211 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002441 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (921)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 403 (921)
+...+.+.|..+ .-.+...+-.++.+..-.|++++|.+.+++++.+.|...+
T Consensus 289 l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 289 LSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 111111111111 1122233344555566666777777777777766665443
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.042 Score=70.61 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002441 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (921)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (921)
..+-+-.+++++-....++.....++.++...+++....|.++.|...+-++.+.. -++++...|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44445555554433222223344556677777777777777777777777666555 4566777777777777777777
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (921)
Q Consensus 321 ~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la 375 (921)
..+++.++.+ |+ . ..+...++......+++ +.-+++|+.+.+..|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 7777777542 11 0 11222333333333432 3345666666666665555555555
No 344
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0019 Score=68.80 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 128 (921)
.|+...+...+.+..+.|..+|+++.+..+.....|...|...+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666777777778888888888876555567788888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002441 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (921)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (921)
.|+.+.|..+|++++..-+..... -.+|......-...|+.+...+..+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888776554311 123444444445556666666666666665555
No 345
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.53 E-value=0.2 Score=54.15 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=61.1
Q ss_pred ccCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (921)
Q Consensus 42 ~~~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 120 (921)
...+.+.-.|+++.+.+-.++.+++-.+.|++...-.|--..+|...-..-...+++..-..+|-+++...-+ .+.|.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 4456788899999999999999999999999998888877777776666666677888888888888765433 44443
No 346
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.52 E-value=0.0001 Score=79.79 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 416 (921)
.-.-+...+.-+.++.|+..|.+|++++|+.+..+.+.+.++.+.+++..|+..+.++++.+|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhhHhh
Q 002441 417 SISLAIDAYEQCLKIDPDSRNAGQN 441 (921)
Q Consensus 417 ~~~~A~~~~~~al~l~P~~~~a~~~ 441 (921)
++.+|...|++...+.|+++.+...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999877654
No 347
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.50 E-value=0.00022 Score=51.91 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (921)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 409 (921)
+..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444444444444444444444444444333
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.50 E-value=0.11 Score=55.31 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=87.2
Q ss_pred HhCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCChHhHHHHH
Q 002441 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~a~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~la 157 (921)
.+|+.+.|..++.++-... |+. ...+++.|......+ ++++|...++++.++ .....+......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4556666666665554432 221 234566666666666 777777777777665 233445555677
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002441 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (921)
Q Consensus 158 ~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (921)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 78888999998877654 455566666666788888886666667778999999999999988654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.48 E-value=0.41 Score=56.54 Aligned_cols=304 Identities=15% Similarity=0.032 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 002441 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (921)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (921)
.+.+..-+.-+...|...+|++..-.+ .+|... ......+.-+...++.. .+...++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 456666666677777777777655332 222221 12222333344444432 2222333333211 11111223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 002441 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (921)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 226 (921)
...+.......++.+|...+.++...-+. .+...-..|.+....|++++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 34455666778999999888887665333 24455567888999999999999999999876654 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHH--HHHHHHHHH----HHhCCCCH
Q 002441 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKA----LYYNWHYA 300 (921)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~--~A~~~~~~a----l~~~~~~~ 300 (921)
++..+|.+..-.|++++|..+...+.+....+. .++....+....+.+...+|+.. +....+... +...|...
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 778889999999999999999999888754433 22233344455566666677332 222222222 22233332
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----H
Q 002441 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--A-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (921)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~ 368 (921)
-.....+.++...-+++.+.....+.++. .|.. . -.++.++.++...|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333334443333466666666665554 2322 2 223589999999999999999999887663222 1
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 369 Q--SLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 369 ~--~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
. ++.-.......+|+.++|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 1222223344579999998888774
No 350
>PLN03004 UDP-glycosyltransferase
Probab=97.47 E-value=0.0019 Score=73.00 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=89.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCCEEEccCcC
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 728 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-------~~-~~~~~~~~~~~~gi~~~rv~~~~~~~ 728 (921)
.+-|+|.||.+...++++-++-.+.-|...+...||.+..+... .. +.+.+.++.+ -..+++.++.|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~-----~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTE-----DKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhcc-----CCcEEEEeeCC
Confidence 34588999999999999999999999999999999988643110 00 1223333322 24567778877
Q ss_pred CcHHHHHhcccccE--EecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHh-hcCCccccc------CCHHHHH
Q 002441 729 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYV 799 (921)
Q Consensus 729 ~~~~~~~~~~~~D~--~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~ 799 (921)
+.+.| ..++| |+ ..+|-+|++||+++|||+|++|--. -...-+.++. .+|+.--+. -+.++-.
T Consensus 344 -Q~~iL---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~-DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 344 -QVPVL---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYA-EQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred -HHHHh---CCCccceEe---ccCcchHHHHHHHcCCCEEeccccc-cchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 44544 33555 65 2477889999999999999998421 1222233443 345543332 2556666
Q ss_pred HHHHHHhcCH
Q 002441 800 QLALQLASDV 809 (921)
Q Consensus 800 ~~a~~l~~d~ 809 (921)
+...++..|+
T Consensus 416 ~av~~vm~~~ 425 (451)
T PLN03004 416 KRVQEIIGEC 425 (451)
T ss_pred HHHHHHhcCH
Confidence 6666666663
No 351
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.45 E-value=0.0036 Score=71.29 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=89.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC---------------CH----HHHHHHHHHHHHcCCC
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC---------------CD----SVRHRFLSTLEQLGLE 717 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---------------~~----~~~~~~~~~~~~~gi~ 717 (921)
.+-|+|.||.+...++++-++-.+.-|.+.|...||.+..+.. .+ .+-+++.++...
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 3458899999999999999999999999999999998853210 00 122344444322
Q ss_pred CCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHH-hhcCCccccc--
Q 002441 718 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA-- 792 (921)
Q Consensus 718 ~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~ia-- 792 (921)
..+++.+++| +.+.+.- ..+..|+ ..+|.+|++||+++|||+|++|- +.+. -+-.+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM---NAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH---HHHHHHHHhCeeEEecCC
Confidence 3467778877 4444432 2233344 34788899999999999999984 4322 23334 3556553332
Q ss_pred ---CCHHHHHHHHHHHhcC
Q 002441 793 ---KNEDEYVQLALQLASD 808 (921)
Q Consensus 793 ---~~~~~y~~~a~~l~~d 808 (921)
-+.++..+...++..+
T Consensus 409 ~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 2556666666676655
No 352
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.45 E-value=0.0039 Score=72.13 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=105.8
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 659 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.++|.+|.+.. ++.++.++...+.+++.|.-++|-.+... .. .++ +++|.+.++.| +.+.|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 35677777654 57889999999999999975455433221 00 234 58999999987 45555
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002441 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 810 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~ 810 (921)
....||+|+ ..+|..|+.||++.|||+|.+|- +.+ .-+..+...|....+- -+.++..+...++.+|+.
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~---~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQF---YNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCccHH---HHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 335688888 35777899999999999999884 432 2234445667664442 266777777778889987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002441 811 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 811 ~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~ 842 (921)
.+++.++ +++.+...|.--.+..+..+|.+.
T Consensus 435 y~~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 435 YRKNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7766554 444455455433455556666554
No 353
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.43 E-value=0.0003 Score=51.18 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (921)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666654
No 354
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0014 Score=67.55 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 122 (921)
.++.+-..|+.|++.++|..|+..|.+.|+..-. ++..|.++|-|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566777899999999999999999999997544 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
+.|++.+.++.+|...++..+.++.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999987766543
No 355
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=97.39 E-value=0.0071 Score=68.70 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=110.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 719 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~-----~~~~~~~~~~~~~-------~gi~~~ 719 (921)
|..++.+..|+ .|..+.-++++.++|+..|+ .+|++++.+... ...+..+.+...+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 44456677877 89999999999999999996 688888765422 2234444443333 3554 3
Q ss_pred CEEEccCcCCcHHHHHhcccccEEecCCCCCC-cccHHHHhhcCC----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002441 720 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 792 (921)
Q Consensus 720 rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g-~~t~~eal~~Gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~i--a 792 (921)
.+.|.+.++ .++..+.|..+||+|.|+-+-| +.++.|.++++. |+|. |+.+++- ..+. .-++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 456667666 6899999999999999999966 559999999988 6664 7766332 1211 1222 3
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002441 793 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 840 (921)
Q Consensus 793 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~ 840 (921)
.|.++..+...+-.+.+ +++++--+++++.+.+ +|...|++.+=.
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~ 478 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLA 478 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHH
Confidence 56666666554444443 3444444555555543 466676665543
No 356
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.39 E-value=0.043 Score=59.56 Aligned_cols=178 Identities=12% Similarity=0.019 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCChHh
Q 002441 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA 152 (921)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 152 (921)
+++....+-.+|....+|+.-+++.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999998887666 45567788889999998 99999999999994 4556667777
Q ss_pred HHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 002441 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (921)
Q Consensus 153 ~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (921)
.-..+.+|..+-.. .......++|+..|.++.+.+|+. ..-.|++.++...|.-.+...-+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66677777665433 122345899999999999999654 334566666666665433332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002441 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
.-.+...+-.++.+..-.|++++|++.++++++..|..-
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123455666777888889999999999999999987643
No 357
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.011 Score=64.68 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=143.3
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEe----eccCCCCCCCCCccEEEecCCCCCCCcccCcccceE
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVT----WIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELI 631 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~----~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~ 631 (921)
.++-+.|+..++|++|-..|+-.+--.--.....=||=+. ..|--+-...+..+++.+... +.......|+.+
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f~---~~~~~~~~~~~~ 157 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAFP---KLEAGVKPENVV 157 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeeccc---cccccCCCCceE
Confidence 5788899999999999998888744332222333454322 222222222233444443211 111111122222
Q ss_pred EcCCCccccCCCCCC-C-CCCCCCCCCCCCeEEEecC---CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 002441 632 RLPECFLCYTPSPEA-G-PVCPTPALTNGFITFGSFN---NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 706 (921)
Q Consensus 632 ~lp~~~~~~~~~~~~-~-~~~~~~~~~~~~~~f~~~~---~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 706 (921)
..-.. ..+.-.. + +..+..+.. +..|...+. -..+++..+-+++..+.+ +-.++..++. .....
T Consensus 158 ~tG~P---vr~~~~~~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~ 226 (357)
T COG0707 158 VTGIP---VRPEFEELPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEE 226 (357)
T ss_pred EecCc---ccHHhhccchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHH
Confidence 21110 0000000 0 000111111 444444443 335566666555555444 3455554443 22567
Q ss_pred HHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc---cccchhHHH
Q 002441 707 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLL 782 (921)
Q Consensus 707 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l 782 (921)
+.....+.|+ +.+.|.. ++....|..+|+++ . +|++|..|.+++|+|+|-.|=..- ....-|-.|
T Consensus 227 ~~~~~~~~~~----~~v~~f~---~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 227 LKSAYNELGV----VRVLPFI---DDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred HHHHHhhcCc----EEEeeHH---hhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 7777777777 6666663 46777888899999 6 899999999999999998774433 445567888
Q ss_pred hhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002441 783 TKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 823 (921)
Q Consensus 783 ~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 823 (921)
...|..-.+.+ +.+.+++...++.++++.+.+++...++..
T Consensus 296 ~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 296 EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 88888777744 468999999999999999999999888763
No 358
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.36 E-value=0.0002 Score=48.62 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=17.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (921)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 359
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.33 Score=52.74 Aligned_cols=336 Identities=12% Similarity=0.002 Sum_probs=178.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------HH
Q 002441 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------AC 117 (921)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~ 117 (921)
.+-...+-.++.+.-...+-..-+..|..+......|...++.+.+.+|++.+......-... ..
T Consensus 50 grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~ 129 (549)
T PF07079_consen 50 GRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF 129 (549)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH
Confidence 333344445667776666666666788888888999999999999999999988776541111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChHhHHHHHHHHHHHHHHHHH----cCChHHHHHHHH-------
Q 002441 118 AHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYY------- 181 (921)
Q Consensus 118 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~------- 181 (921)
.-...+.++...|++.++...+++.+..--. +.+.+.. +...+|..|.. ....+-+..+|+
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 2244578899999999999999988764222 1222111 11122322221 111111111111
Q ss_pred HHHhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHHHHH
Q 002441 182 EALKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYEKAA 218 (921)
Q Consensus 182 ~al~~------------------------~p~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~~al 218 (921)
++-.. -|.. ..++.+...-|. -..+.+++....+...
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia 286 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIA 286 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 11110 1110 001111000000 0012222222222221
Q ss_pred Hh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHH--------------------------------
Q 002441 219 LE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-------------------------------- 261 (921)
Q Consensus 219 ~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------- 261 (921)
.. ...-....-.+-....+.++..+|.+++.-...++|+....
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe 366 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWE 366 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11 00011112222223345566677776666655555543210
Q ss_pred --------HHHHHHHHHhhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhh-
Q 002441 262 --------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFHF- 329 (921)
Q Consensus 262 --------~~~la~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~- 329 (921)
...+..-+...+.-+...|. -++|+..++.+++..+.+.+.....-. +-...|.+|+. .+.+.+.+
T Consensus 367 ~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 367 EIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHH
Confidence 11111122222333444455 788999999999888877654322111 11112222221 12222211
Q ss_pred --------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 330 --------NP---HCAEACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 330 --------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
.| .+.+.-+.+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.++...++|++|..++...
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 11 234444444 4557789999999998888889999 8999999999999999999999998754
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.21 Score=64.60 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------C
Q 002441 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y 401 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----------~ 401 (921)
..+.|...|++....|+++.|..++-+|.+.. -++++...|..+...|+-..|+..+++.++.+ |+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36778888888888888888888877777665 46777778888888888888888888887652 22 1
Q ss_pred ------HHHHHHHHHHHHHcCCH--HHHHHHHHHHhhcCCCChhhH
Q 002441 402 ------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 402 ------~~~~~~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~a~ 439 (921)
..+...++....+.|++ ..-+++|+.+.++.|+..+-+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~h 1792 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKH 1792 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCce
Confidence 12344445555555553 234567777777777554433
No 361
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0025 Score=65.74 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (921)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (921)
.|.-+..-|+-|++.++|..|+..|.+.|+..-. ++..|.+.+.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5667888999999999999999999999988433 467789999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC
Q 002441 232 GVIYKNRGDLESAIACYERCLAVSPN 257 (921)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~ 257 (921)
+.+++.+.++.+|...++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776554
No 362
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.33 E-value=0.00035 Score=47.59 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
No 363
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.31 E-value=0.0051 Score=70.41 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=73.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHH
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 733 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 733 (921)
+.|+|.||.+...++++.++-.+.-|.+.+...||.++.+... ..+...+.++.. ...+++.++.+ +.+.
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~v 356 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVAI 356 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHHH
Confidence 4578999999999999999999999999999999988643211 112233333322 24567778887 4444
Q ss_pred HHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 734 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 734 ~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
|. ...+++|+ ..+|-+|++||++.|||+|++|-
T Consensus 357 L~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 357 LS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred hc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 43 34577777 35888899999999999999983
No 364
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.30 E-value=0.38 Score=52.11 Aligned_cols=143 Identities=9% Similarity=-0.004 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
-++.-++.+|++...|+.+...+..++.+++-.+.|++...-.|--+.+|...-.--...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3444578899999999999999999999999999999999888887777776665556678888888889888875433
Q ss_pred hHhHHHHHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 002441 150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA 210 (921)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~------g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A 210 (921)
.+.|.. |. .|.+. | ..-+|.+..-...-.+|.....|...+..+. ++.+.+.-
T Consensus 109 ldLW~l----Yl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 109 LDLWML----YL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhHHHH----HH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 222111 11 11111 1 1122333322233346776667766665543 33445666
Q ss_pred HHHHHHHHHhC
Q 002441 211 LGCYEKAALER 221 (921)
Q Consensus 211 ~~~~~~al~~~ 221 (921)
...|.+++...
T Consensus 181 R~~Y~ral~tP 191 (660)
T COG5107 181 RNGYMRALQTP 191 (660)
T ss_pred HHHHHHHHcCc
Confidence 77788887653
No 365
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00025 Score=48.09 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=20.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (921)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (921)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 366
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.30 E-value=0.0034 Score=71.23 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=89.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCCEEEccCcCCcH
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 731 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~----~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 731 (921)
.+-|+|.||.+..+++++.+.-.+.-|...+...||.+..+.. ++. +...+.++ + .+|..+.+++| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 3568999999999999999999999999999999998763311 111 22333333 2 36777778887 44
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhc-CCcccc--cCCHHHHHHHHHHHhcC
Q 002441 732 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASD 808 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~i--a~~~~~y~~~a~~l~~d 808 (921)
+.| ....+..|+ ..+|-+|++||+++|||+|++|--.= ...-+-.+... |+.--+ .-+.++..+...++..|
T Consensus 336 ~iL-~h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~D-Q~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 336 EVL-SHPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSD-QKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred HHh-CCCccCeee---ecCchhHHHHHHHcCCCEEecccccc-CHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 444 334455566 34778899999999999999984211 12222333221 333111 12556666656566666
Q ss_pred H
Q 002441 809 V 809 (921)
Q Consensus 809 ~ 809 (921)
+
T Consensus 411 ~ 411 (451)
T PLN02410 411 E 411 (451)
T ss_pred C
Confidence 4
No 367
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.28 E-value=0.0057 Score=70.31 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
+.|+|-||.+...++++.+.-.+.-|.+.+...||.++.+... ..+.+.+.++.. +|..+.++.| +.+
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~------~rg~v~~w~P-Q~~ 352 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVM------GRGLVCGWAP-QVE 352 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhc------cCeeeeccCC-HHH
Confidence 4578999988888899999999999999999888887643211 012233333321 4556678876 344
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
.| .+..++.|| ..+|-+|++||+++|||+|++|-
T Consensus 353 iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 353 IL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred Hh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 44 334456666 35788899999999999999883
No 368
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.28 E-value=0.012 Score=71.71 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=118.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEE--ecCCCC-CHHHHHHHHHHHH--------HcCCC-CCCE
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVV--KCKPFC-CDSVRHRFLSTLE--------QLGLE-SLRV 721 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~~--~~~~~~-~~~~~~~~~~~~~--------~~gi~-~~rv 721 (921)
|..++.+.-++ .|..+.-+.+|.+.|+..|+-+ +++ +..|.. +.+..+.++..+. ++|-. ..=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34456677766 8999999999999999999853 333 333322 2123333333332 23321 1225
Q ss_pred EEccCcCCcHHHHHhcccccEEecCCCCCC-cccHHHHhhc-----CCcEEecCCCcccccchh--HHHhhcCCcccc--
Q 002441 722 DLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYM-----GVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI-- 791 (921)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g-~~t~~eal~~-----GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i-- 791 (921)
.+....-+.++++++|..+||+|.|.-.-| +.++.|+++| |++|+ |.+++ ..| |-..++
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL--------SEfaGaa~~L---~~~AllVN 510 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL--------SEFAGAAQSL---GAGAILVN 510 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEE--------eCCCchHHHh---CCceEEEC
Confidence 555443447899999999999999998855 7799999999 67777 33331 122 323334
Q ss_pred cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002441 792 AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 848 (921)
Q Consensus 792 a~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~ 848 (921)
..|.++..+...+..+ +++++.+..+.+++.+. -+|...|++.|...+...|..
T Consensus 511 P~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~---~~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 511 PWNITEVAASIAQALNMPEEEREKRHRHNFMHVT---THTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---cCCHHHHHHHHHHHHHHHHhh
Confidence 3577777777766666 88888888888888764 368899999988888887743
No 369
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.28 E-value=0.0061 Score=70.28 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
++.|+|.||.+...+++.-+.-.+.-|...+...||.++.+... + .+.+.+.++. .+..|++.++.| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 34578999999888877766666677888888889988753211 1 1222333332 235778888887 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~ 769 (921)
.|.- ..+..|+ ..+|-+|++||+++|||+|++|
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 4432 2233355 3577889999999999999998
No 370
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.27 E-value=0.00057 Score=46.45 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
No 371
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.036 Score=57.07 Aligned_cols=154 Identities=16% Similarity=0.043 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 002441 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 163 (921)
.-+..+......|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....+. .... ......
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~--l~a~i~- 211 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHG--LQAQIE- 211 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHH--HHHHHH-
Confidence 344445555566666666666666666666666666666666666666666665554432211111 1000 000011
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH
Q 002441 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDL 241 (921)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~ 241 (921)
.+.+.....+ ...+++.+..+|++..+-+.+|..+...|+.+.|++.+-..++.+.. +..+...+-.++...|.-
T Consensus 212 --ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 212 --LLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred --HHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 1111111111 12334455668888888888999999999999988888888776543 344555555555555533
Q ss_pred HHH
Q 002441 242 ESA 244 (921)
Q Consensus 242 ~~A 244 (921)
+.+
T Consensus 289 Dp~ 291 (304)
T COG3118 289 DPL 291 (304)
T ss_pred CHH
Confidence 333
No 372
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.012 Score=60.35 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~ 125 (921)
..+..+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+...-....+.. ..+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 5566777888999999999999999999999999999999999999999999999888766432222211 111111233
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 002441 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSE 203 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 203 (921)
+.+.....+. ..+++.+..+|++.+. -+.++..+...|+.++|.+.+-..++.+-. +..+...+-.++..
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 3333333322 3455666788988776 455667777789999999999988887543 44555555555555
Q ss_pred cCCHH
Q 002441 204 LMQYD 208 (921)
Q Consensus 204 ~g~~~ 208 (921)
.|.-+
T Consensus 285 ~g~~D 289 (304)
T COG3118 285 FGPAD 289 (304)
T ss_pred cCCCC
Confidence 55333
No 373
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.066 Score=53.77 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 002441 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TA 210 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 210 (921)
-..|+...+.++.++|.+-..+...-.++..++ .+..+-++++.++++.+|++-.+|...-.+....|++. .-
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344556666677777777666555444444443 34666778888888888888888888888888888877 77
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-hhhhhhhcCCHHHHHHHH
Q 002441 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-lg~~~~~~~~~~~A~~~~ 289 (921)
++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+-.+..++...-.+... .| ....-..+.-+.+.
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~yt 210 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG--VISKAELERELNYT 210 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC--CccHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888887766555444432111111 00 00011344556677
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 002441 290 KKALYYNWHYADAMYNLGVAYGE 312 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~ 312 (921)
.+.+...|++..+|..|.-++..
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHh
Confidence 77788888888888777777664
No 374
>PLN02764 glycosyltransferase family protein
Probab=97.23 E-value=0.0062 Score=68.73 Aligned_cols=182 Identities=9% Similarity=0.008 Sum_probs=105.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC----HHHHHHHHHHHHHcCCCCCCEEEccCcCCcHH
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 732 (921)
.+.|+|.||.+...++++-+.-.+.=|...-.--+|++..+... +.+.+.+.++....| +++.++.| +.+
T Consensus 256 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~~ 329 (453)
T PLN02764 256 PDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QPL 329 (453)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HHH
Confidence 45689999999999887766666655666666688888643211 122334444433322 45667776 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHH-hhcCCcccc------cCCHHHHHHHHHHH
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQL 805 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i------a~~~~~y~~~a~~l 805 (921)
.| ....++.|+ ..+|.+|++||++.|||+|++|--.= ...-+.++ ..+|+.--+ .-+.++-.+...++
T Consensus 330 vL-~h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~v 404 (453)
T PLN02764 330 IL-SHPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGD-QVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSV 404 (453)
T ss_pred Hh-cCcccCeEE---ecCCchHHHHHHHcCCCEEeCCcccc-hHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHH
Confidence 44 335566676 35888899999999999999985211 12223334 334443111 12667777777777
Q ss_pred hcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002441 806 ASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 852 (921)
Q Consensus 806 ~~d~-~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~ 852 (921)
..+. +..+++|++.++..... .+.-..-+.+++..+. |++++.+
T Consensus 405 m~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 405 MKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred hcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 7664 44566666665533222 1222233456655533 5555543
No 375
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.23 E-value=0.0058 Score=70.35 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=79.0
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----------C--HHHHHHHHHHHHHcCCCCCCEEEc
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C--DSVRHRFLSTLEQLGLESLRVDLL 724 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~--~~~~~~~~~~~~~~gi~~~rv~~~ 724 (921)
+.|+|-||.+...++++.++-.+.-|.+.+.-.||.+..+.. + +.+...+.++. .+|+.+.
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v~ 347 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKVI 347 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceEE
Confidence 457899999999999999999999999999988888753210 0 00122333322 2677777
Q ss_pred cCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCc
Q 002441 725 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLK 788 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~ 788 (921)
++.| +.+.| ....++.|+ ..+|-+|++||++.|||+|++| ++.+.. +.-++..+|+.
T Consensus 348 ~W~P-Q~~iL-~H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~G 406 (481)
T PLN02554 348 GWAP-QVAVL-AKPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLA 406 (481)
T ss_pred eeCC-HHHHh-CCcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCce
Confidence 8877 44544 335566666 3577889999999999999998 444322 11234555553
No 376
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.20 E-value=0.44 Score=58.42 Aligned_cols=335 Identities=13% Similarity=0.035 Sum_probs=184.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 52 l~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~ 121 (921)
+..-.+++..+.|++|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++. .-.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 445677888999999999999999988864 46888888887654 2 466777777664 345667777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-------- 193 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------- 193 (921)
.|.+|.++|++++-+++|.-+++..|+.+......-.+.+.+-.+.... -..|....--++..-|.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 9999999999999999999999999998876554444444443333321 122323322333333321100
Q ss_pred ---------------------HHH-H-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002441 194 ---------------------YYN-L-GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 194 ---------------------~~~-l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
... + -.+.+-.|..---.+.++++.+..+- .++.+.-.+...+|+++-+.+....
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 000 0 01111223333334455555554432 5666666667788887766554443
Q ss_pred HHH---h--CCChHH--HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHH
Q 002441 251 CLA---V--SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVF 322 (921)
Q Consensus 251 al~---~--~p~~~~--~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~ 322 (921)
.-+ . .|.... ....+...+..+ ........++++.+.+... .|.... +....+.-....++.+.-...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGL-EALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHH-HHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 321 1 122211 111111111222 1222344666666544332 222221 222222222333333333333
Q ss_pred HHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 323 YELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (921)
Q Consensus 323 ~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 395 (921)
.+.+-... ............+|.-..++++|-+.+..-- ....+...++...|.-+...++-+-|...|..+.
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 33322221 1223344455666777788888888774321 1123445677777777777788888888887776
No 377
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.20 E-value=0.01 Score=67.19 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 657 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 657 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
+..++|.++.+... ....+.+...+.+...+.-.++..|..... . ..+ +++|.+.+.++ ..+.
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~~l-- 301 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HDWL-- 301 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HHHH--
Confidence 34566667766543 445677777777777655555555432111 0 123 58899998875 3444
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002441 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 812 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 812 (921)
+..||+++ ..+|.+|++|||++|||+|.++-..- .-.-+..+...|..-.+.. +.++..+...++.+|+ .+
T Consensus 302 -l~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 302 -LPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred -hhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 55599999 45777999999999999998875321 2334555667787655533 6677777666777754 44
Q ss_pred HHHHHHH
Q 002441 813 ANLRMSL 819 (921)
Q Consensus 813 ~~~r~~~ 819 (921)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444333
No 378
>PLN02210 UDP-glucosyl transferase
Probab=97.17 E-value=0.0072 Score=68.90 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=87.4
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
..|+|.||.+..+.+++.++..+.-|...+...||.++..... .....+.++.. .+|..+.++.| +.+.|+-
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~~-----~~~g~v~~w~P-Q~~iL~h- 340 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMVK-----EGQGVVLEWSP-QEKILSH- 340 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhcc-----CCCeEEEecCC-HHHHhcC-
Confidence 4578999999999999999999999999999888987643211 11122222211 25556678876 4444432
Q ss_pred ccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHhc
Q 002441 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLAS 807 (921)
Q Consensus 738 ~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~~ 807 (921)
..+..|| ..+|-+|++||++.|||+|++|- +.+ +-+-++.. +|+.-.+. -+.++-.+...++..
T Consensus 341 ~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~ 414 (456)
T PLN02210 341 MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE 414 (456)
T ss_pred cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc
Confidence 3344666 24777899999999999999984 433 22333433 44442221 255555555555555
Q ss_pred CH
Q 002441 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
|+
T Consensus 415 ~~ 416 (456)
T PLN02210 415 GP 416 (456)
T ss_pred Cc
Confidence 53
No 379
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.27 Score=49.54 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=141.2
Q ss_pred cchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 46 FEGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
.+-+..+...++.+.. .+-..|+++-..++..+|.+...|...-.++..++ +..+-++++.++++.+|+|-.+|...-
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 3455566666555544 45688999999999999999988888877776554 678888999999999999999999999
Q ss_pred HHHHHcCCHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (921)
Q Consensus 124 ~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (921)
.+....|+.. .-++..+.++..+.++-.++...-. +....+.++.-+.+..+.++.+-.+-.+|...-.+..
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW-------~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~ 192 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQW-------VLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVIT 192 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHH-------HHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEE
Confidence 9999999888 8889999999988887666543333 3344477999999999999887766666654322222
Q ss_pred H-c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002441 203 E-L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (921)
Q Consensus 203 ~-~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (921)
. . -..+.-+.+..+.+...|++..+|..|.-++..
T Consensus 193 ~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 193 NTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2 1 124456677888899999999999998888775
No 380
>PLN00414 glycosyltransferase family protein
Probab=97.14 E-value=0.0089 Score=67.83 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=92.2
Q ss_pred CCCCeEEEecCCCCcCC-HHHHHHHHHHHhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002441 656 TNGFITFGSFNNLAKIT-PKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 656 ~~~~~~f~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
+.+-|+|-||.+...++ +++.++... |...-..-||++..+.. .+.+.+.+.++....| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 34668999999999998 555555554 44444456788764321 1123455665554333 45567776 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHH-hhcCCccccc------CCHHHHHHHHH
Q 002441 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 803 (921)
Q Consensus 731 ~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~ia------~~~~~y~~~a~ 803 (921)
.+.|+ ...++.|| ..+|.+|++||+++|||+|++|--.= ...-+.++ ..+|+.--+. -+.++-.+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 44442 34456666 35888899999999999999984211 22234445 3456543221 25666666666
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 002441 804 QLASDV-TALANLRMSLRDL 822 (921)
Q Consensus 804 ~l~~d~-~~~~~~r~~~~~~ 822 (921)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 666553 4455555555543
No 381
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.12 E-value=0.0019 Score=75.63 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=89.0
Q ss_pred CCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 658 GFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
..++|-||.+..+-.| +..+..++.+++.|...||-..+. .... + ++.+.+..+.| +.+.|+
T Consensus 276 ~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~- 338 (500)
T PF00201_consen 276 KGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA- 338 (500)
T ss_dssp TEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT-
T ss_pred CCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh-
Confidence 4577889998765444 458889999999999777755431 1111 1 25678888887 566664
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHH
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 811 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~ 811 (921)
...+++|+ ..+|-+|+.||++.|||+|++| |+.+. -+..+...|....+- -+.++..+...++.+|+..
T Consensus 339 hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~---na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y 412 (500)
T PF00201_consen 339 HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR---NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSY 412 (500)
T ss_dssp STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH---HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHH
T ss_pred cccceeee---eccccchhhhhhhccCCccCCCCcccCCc---cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHH
Confidence 45567777 2477779999999999999988 55432 244556667754332 2678888888888899876
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002441 812 LANLRMSLRDLMSKSPVCDGQNFALGLESTY 842 (921)
Q Consensus 812 ~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~ 842 (921)
.++.++ +++.+...|.--.+..+..+|-+.
T Consensus 413 ~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 413 KENAKR-LSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp HHHHHH-HHHTTT------------------
T ss_pred HHHHHH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 655443 444444444322334444444333
No 382
>PLN02207 UDP-glycosyltransferase
Probab=97.09 E-value=0.016 Score=65.98 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.+-|+|-||.+...++++.++..+.-|...+...||.+..+.. .+.+.+.+.++. .+|+.+.++.| +.+.|
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~------~~~g~i~~W~P-Q~~IL 346 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRV------SGRGMICGWSP-QVEIL 346 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhc------CCCeEEEEeCC-HHHHh
Confidence 3568899999999999999999999999999999998764221 111113333322 36667778877 45544
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcc
Q 002441 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 773 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~ 773 (921)
+ ...+..|+ ..+|-++++||+++|||+|++| ++.+
T Consensus 347 ~-H~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 347 A-HKAVGGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred c-ccccceee---ecCccccHHHHHHcCCCEEecCccccch
Confidence 3 34455555 2477889999999999999998 4444
No 383
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.09 E-value=0.0093 Score=68.36 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.+.++|-||.+...++++.++....-|+..+...||....+ ...+.++ ..+|+.+.++.+ +.+.|.
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~- 338 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLC- 338 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhc-
Confidence 35578999998888999999999999999988788865432 1112211 136788888876 455553
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHHHhh-cCCccccc--------CCHHHHHHHHHHHhc
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA--------KNEDEYVQLALQLAS 807 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia--------~~~~~y~~~a~~l~~ 807 (921)
...+..|+ ..+|.+|++||+++|||+|++|--.= ...-+-.+.. +|+.--|. -+.++-.+...++..
T Consensus 339 h~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~D-Q~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 339 HSSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWD-QPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred cCccceEE---ecCchhHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 23344466 35788899999999999999984211 1112223322 33332221 255666666666666
Q ss_pred CH
Q 002441 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 53
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.03 Score=53.90 Aligned_cols=117 Identities=24% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 318 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444455555554442 345678889999999999999999998654432 336688999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
+......= .+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76532210 13345678999999999999999999999998543
No 385
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.04 E-value=0.0064 Score=66.47 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
++..++.+|+....- ++ .+++++.|+..+++.|.+. .. ...++|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~-----------~~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----AD-----------PRPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----cc-----------ccCCCEEEeecC--hHHHHHH
Confidence 344456676655333 33 4677789988888876541 00 014788887764 2466667
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCCC-cccccchhHHHhhcCCccccc
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-VHAHNVGVSLLTKVGLKHLIA 792 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~~~l~~~gl~~~ia 792 (921)
+..||+++-. +|.||++|++++|+|+|.++-. ....+.-+..|..+|+...+.
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence 7779999943 7788899999999999998865 355666788899999887763
No 386
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=1.1 Score=52.36 Aligned_cols=369 Identities=12% Similarity=-0.021 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHH
Q 002441 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAESY 139 (921)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~~ 139 (921)
.-++=+.-++.-+..++.+...+..+-..+...|+.++-...-.++.++.|..+..|.....-.. ..++-.++...|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 33444555555566778888888899999999999999888888888888888888776553322 346778888999
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 002441 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTALG 212 (921)
Q Consensus 140 ~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~ 212 (921)
++++.-. .....+...+......+..+...++++.-...|.+++..--. ....+...-..|...-..++-+.
T Consensus 174 ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a 252 (881)
T KOG0128|consen 174 EKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIA 252 (881)
T ss_pred HHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9998643 344555666666666666667778899999999988875221 24455566666666666677788
Q ss_pred HHHHHHHhCCCC---HHHHHHHH--H-HHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHH
Q 002441 213 CYEKAALERPMY---AEAYCNMG--V-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 213 ~~~~al~~~p~~---~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
++...+...-+. ...+.... . ......+++.|...+.+.+.............-..+...-+.....|+...-.
T Consensus 253 ~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 253 LFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 887777654211 11122222 1 12234456666655554443333222222222223333344445566666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHH------------------------------
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAE------------------------------ 335 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~------------------------------ 335 (921)
..++++....+.+...|...+...-. ++-.+.+...+.+++...|-...
T Consensus 333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~ 412 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT 412 (881)
T ss_pred HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 66777766666555555554433211 11111111111111111111000
Q ss_pred -HHHHHHHHHHH-c------CCH-------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC
Q 002441 336 -ACNNLGVIYKD-R------DNL-------DKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAAN 398 (921)
Q Consensus 336 -~~~~la~~~~~-~------g~~-------~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~ 398 (921)
.+.+....|.+ . .++ ..|..+|...... -......+...|.++.. +++.+.|..+.+..+...
T Consensus 413 ~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~ 492 (881)
T KOG0128|consen 413 VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG 492 (881)
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC
Confidence 01111111111 1 123 3333333333222 11123344555555443 567888888887776665
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 002441 399 PTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (921)
Q Consensus 399 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~ 432 (921)
..... .|+....+-...|+...+..++++|+.--
T Consensus 493 ~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 493 GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 54444 77888888888899999999888887643
No 387
>PLN02562 UDP-glycosyltransferase
Probab=97.01 E-value=0.015 Score=66.17 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=87.0
Q ss_pred CeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhc
Q 002441 659 FITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 737 (921)
Q Consensus 659 ~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 737 (921)
-++|-||.+.. .++++.++..+.-+...+.-.||.+..+.. +.....+.++ + ++|+.+.++.| +.+.|+-
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h- 344 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH- 344 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC-
Confidence 36788888764 789999999999999999988887753211 1112222222 1 37888888887 4555532
Q ss_pred ccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHh-hcCCcccc-cCCHHHHHHHHHHHhcCHHHHH
Q 002441 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 738 ~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~~ 813 (921)
..+-.|+ ..+|-+|++||+++|||+|++| ++.+.. +-.+. .+|+.=-+ --+.++-.+...++..|++.++
T Consensus 345 ~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n---a~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~ 418 (448)
T PLN02562 345 QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVN---CAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGE 418 (448)
T ss_pred CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHH---HHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHH
Confidence 3333455 3577889999999999999988 443321 12221 12332111 1266675555556667765554
Q ss_pred H
Q 002441 814 N 814 (921)
Q Consensus 814 ~ 814 (921)
+
T Consensus 419 ~ 419 (448)
T PLN02562 419 R 419 (448)
T ss_pred H
Confidence 4
No 388
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.01 E-value=0.0094 Score=67.48 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=89.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.+.|+|-||.+...++++.++-.+.-|...| .||.+..+. .+...+.+.++ +..+++.+.++.| +.+.|+
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 3558899999999999999998888887666 778775321 11111222222 2246788889987 455443
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 806 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~ 806 (921)
...+..|| ..+|.+|++||+++|||+|++|- +.+ .-+-++.. +|+.--|. -+.++-.+...++.
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm 406 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP---MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVM 406 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchhcch---HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHh
Confidence 34445665 35888899999999999999983 432 22333432 23321111 15667766666766
Q ss_pred cCHHHHHHHHHHHH
Q 002441 807 SDVTALANLRMSLR 820 (921)
Q Consensus 807 ~d~~~~~~~r~~~~ 820 (921)
.|.+. +++|.+.+
T Consensus 407 ~~~~~-~~~r~~a~ 419 (449)
T PLN02173 407 EGEKS-KEMKENAG 419 (449)
T ss_pred cCChH-HHHHHHHH
Confidence 66432 34444333
No 389
>PLN00164 glucosyltransferase; Provisional
Probab=97.01 E-value=0.011 Score=67.84 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------C----HHHHHHHHHHHHHcCCCCCCEEEccC
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------C----DSVRHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~----~~~~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+.|+|.||.+...++++.++-.+.-|.+.+...||++..+.. + +...+.+.++.+.. .+++.++
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----g~~v~~w 346 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGR-----GLVWPTW 346 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCC-----CeEEeec
Confidence 457899999888999998999999999999988998764211 0 01223333333222 2556677
Q ss_pred cCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc--------CCHH
Q 002441 727 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA--------KNED 796 (921)
Q Consensus 727 ~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia--------~~~~ 796 (921)
.| +.+.|.- ..+-.|| ..+|-+|++||+++|||+|++| ++.+.. +--+...+|+.-.+. -+.+
T Consensus 347 ~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvG~~~~~~~~~~~~~~~e 419 (480)
T PLN00164 347 AP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN--AFELVADMGVAVAMKVDRKRDNFVEAA 419 (480)
T ss_pred CC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH--HHHHHHHhCeEEEeccccccCCcCcHH
Confidence 76 4444432 2333455 3578889999999999999998 443322 112334456543331 1445
Q ss_pred HHHHHHHHHhcCH
Q 002441 797 EYVQLALQLASDV 809 (921)
Q Consensus 797 ~y~~~a~~l~~d~ 809 (921)
+-.+...++..|.
T Consensus 420 ~l~~av~~vm~~~ 432 (480)
T PLN00164 420 ELERAVRSLMGGG 432 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 5555555666653
No 390
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.96 E-value=0.00086 Score=69.48 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (921)
Q Consensus 50 ~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 129 (921)
..-..|...+..|++++|++.|..+++++|..+..+..++.+++.+++...|+..+..+++++|+...-|-..+.....+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 34446777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002441 130 GRLVEAAESYHKALSADPS 148 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (921)
|++++|...+..+.+++-+
T Consensus 196 g~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hchHHHHHHHHHHHhcccc
Confidence 9999999999999987654
No 391
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.94 E-value=0.0018 Score=44.04 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002441 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (921)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 400 (921)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.93 Score=50.08 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHC 122 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l 122 (921)
+.+.|+.......+.+.+.+--++|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 566666666666666667777777777777777777777777766666554 6777777777777777777665444
No 393
>PLN02555 limonoid glucosyltransferase
Probab=96.93 E-value=0.015 Score=66.57 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=92.1
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH-HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
+.|+|-||.+...+++..+.-.+.-|...+...||.+..+.... .....+-+.+.+ .+ .+|+.+.++.| +.+.| .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 34789999988899998888888888999888888865321100 000111111211 12 36787788876 34434 3
Q ss_pred cccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCccccc--------CCHHHHHHHHHHHh
Q 002441 737 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA--------KNEDEYVQLALQLA 806 (921)
Q Consensus 737 ~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia--------~~~~~y~~~a~~l~ 806 (921)
+..+..|+ ..+|-+|++||+++|||+|++| ++.+.. +.-+...+|+.--+. =+.++..+...++.
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD--AVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEAT 427 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH--HHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHh
Confidence 45577777 3578889999999999999988 443322 111222335543331 14556665555666
Q ss_pred cCHHHHHHHHHHHHH
Q 002441 807 SDVTALANLRMSLRD 821 (921)
Q Consensus 807 ~d~~~~~~~r~~~~~ 821 (921)
.++ .-+.+|++.++
T Consensus 428 ~~~-~g~~~r~ra~~ 441 (480)
T PLN02555 428 VGE-KAAELKQNALK 441 (480)
T ss_pred cCc-hHHHHHHHHHH
Confidence 553 23455555544
No 394
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.14 Score=49.44 Aligned_cols=120 Identities=22% Similarity=0.134 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 002441 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA 210 (921)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 210 (921)
+.....++....++....+ ......++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555555554333 2235567788888999999999999888654432 45667899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCh
Q 002441 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (921)
+..+....... -.+..-...|.++...|+-++|...|+++++..++.
T Consensus 146 L~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99887653221 123445678999999999999999999999987554
No 395
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.91 E-value=0.023 Score=53.97 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002441 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (921)
Q Consensus 49 ~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (921)
+.+...|......++.+.++..+++++...... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777788899999999999999864321 2355667778889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002441 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (921)
Q Consensus 107 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 144 (921)
+++..+|.+-.++..+..++...|+..+|++.|++..+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754
No 396
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.90 E-value=0.0067 Score=64.62 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEec
Q 002441 667 NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 745 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld 745 (921)
...+++..+++...++. ++..+ ++.|.+.. ..+.+++..+.. .+|.+.+.+ .+....+..||+++-
T Consensus 181 d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~---~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 181 DPDNLTLKLLSALAESQ---INISITLVTGSSNP---NLDELKKFAKEY----PNIILFIDV---ENMAELMNEADLAIG 247 (279)
T ss_pred CCcCHHHHHHHHHhccc---cCceEEEEECCCCc---CHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHCCEEEE
Confidence 34556777776665532 33333 34454432 234555555442 478877764 355566677999996
Q ss_pred CCCCCCcccHHHHhhcCCcEEecC
Q 002441 746 TFPYAGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 746 ~~~~~g~~t~~eal~~GvPvvt~~ 769 (921)
.||+|+.|++++|+|+|.++
T Consensus 248 ----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 248 ----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred ----CCchHHHHHHHcCCCEEEEE
Confidence 47799999999999988754
No 397
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.89 E-value=0.0024 Score=43.30 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
++.+|.++...|++++|+++|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444443
No 398
>PLN02208 glycosyltransferase family protein
Probab=96.89 E-value=0.015 Score=65.94 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=91.7
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002441 657 NGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
.+.|+|-||.+..+++++ +.++...+ ....|- +|+...+.. .+.+.+.+.++... ..+++.++.| +
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~P-Q 321 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQ-Q 321 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCC-H
Confidence 356889999999998888 88877776 777775 566542211 11233455554433 3355667876 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHh-hcCCccccc------CCHHHHHHH
Q 002441 731 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQL 801 (921)
Q Consensus 731 ~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~~~ 801 (921)
.+.|+ ...+..|+ ..+|-+|++||+++|||+|++| ++.+. -+-++. .+|+.--+- -+.++-.+.
T Consensus 322 ~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~~~~~~~~~~l~~a 394 (442)
T PLN02208 322 PLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL---FTRLMTEEFEVSVEVSREKTGWFSKESLSNA 394 (442)
T ss_pred HHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH---HHHHHHHHhceeEEeccccCCcCcHHHHHHH
Confidence 55543 34445566 2477889999999999999998 45432 223333 356543331 155565555
Q ss_pred HHHHhcCH-HHHHHHHHHHHHH
Q 002441 802 ALQLASDV-TALANLRMSLRDL 822 (921)
Q Consensus 802 a~~l~~d~-~~~~~~r~~~~~~ 822 (921)
..++..|+ +..+++|++.++.
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHH
Confidence 55666554 3455666665543
No 399
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.015 Score=55.34 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888888999999999999999999999999999999999999999999999998754
No 400
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.84 E-value=0.51 Score=50.70 Aligned_cols=166 Identities=25% Similarity=0.297 Sum_probs=97.4
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CC
Q 002441 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RG 239 (921)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 239 (921)
...+++..|...+.++-.. ........++.+|... .+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3457788888888877652 3346778888888764 46888999999543 45667889999999988 45
Q ss_pred CHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 002441 240 DLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----ML 314 (921)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g 314 (921)
+..+|..+|+++.+..-... .....++..+..=........+...|...|.++.... +..+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999988754432 2233444433331000000112235555555555443 44444555544432 22
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002441 315 KFDMAIVFYELAFHFNPHCAEACNNLG 341 (921)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la 341 (921)
++.+|...|+++.+... ....+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 44455555555544433 44444444
No 401
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.81 E-value=0.3 Score=52.51 Aligned_cols=113 Identities=28% Similarity=0.340 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCC
Q 002441 299 YADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------NLDKAVECYQMALSIKPN 366 (921)
Q Consensus 299 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~ 366 (921)
.+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+.+.++..|..-. +...|+..|.++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 33444445544444 235555555555555543222 233455555554431 2236777777776654
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002441 367 FSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (921)
Q Consensus 367 ~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 416 (921)
++.+...+|.+|.. ..++.+|..+|+++-+... ....+.++ ++...|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 66777777777655 3477888888888877765 67777777 555554
No 402
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.042 Score=62.25 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=114.5
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 659 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 659 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.+.||..+|+ .|.-+-+..+--.++..- .+|++.|.+ +......++.....+ ++++.+.-.-. ..-....
T Consensus 294 ~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~---~~~~~~~i~~~-~~la~~i 365 (487)
T COG0297 294 GPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRH---PGRVLVVIGYD-EPLAHLI 365 (487)
T ss_pred CcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhc---CceEEEEeeec-HHHHHHH
Confidence 3569999977 899899999888888876 899999876 556777788777776 33554433322 2344567
Q ss_pred cccccEEecCCCC-CCcccHHHHhhcCC-cEEecCCCcccccchhHHHhhcCCccccc------------------CCHH
Q 002441 737 YSLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMAGSVHAHNVGVSLLTKVGLKHLIA------------------KNED 796 (921)
Q Consensus 737 ~~~~D~~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia------------------~~~~ 796 (921)
|..+|++|-|+-| +-|.|-++||..|. ||| .++| ||.+.|. .|.+
T Consensus 366 ~agaD~~lmPSrfEPcGL~ql~amryGtvpIv--------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 366 YAGADVILMPSRFEPCGLTQLYAMRYGTLPIV--------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE--------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 8889999999988 77999999999995 555 4444 5544443 2444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002441 797 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 847 (921)
Q Consensus 797 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~ 847 (921)
++ +.+|+.+..+++.. +|.-.+..|. ..|.+..-+..+.+.|+.+-.
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 43 45666666776542 4444455554 458899999999999987654
No 403
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.79 E-value=0.12 Score=56.19 Aligned_cols=135 Identities=11% Similarity=0.098 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHH
Q 002441 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (921)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (921)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.+++....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999998888766555443 345788888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 250 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
+++.......... . ... ......+. ....++..+.......|-.+.|+..++..+++
T Consensus 127 ~~l~~L~~~~~~~----------~------~~~-~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR----------M------TSH-PDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc----------c------ccc-cchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876432211000 0 000 00000000 01234556667777777777888877777776
Q ss_pred C
Q 002441 330 N 330 (921)
Q Consensus 330 ~ 330 (921)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
No 404
>PLN03015 UDP-glucosyl transferase
Probab=96.78 E-value=0.018 Score=65.24 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCCEEEc
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 724 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~gi~~~rv~~~ 724 (921)
.+-|+|.||.+...++++-++-.+.-|...+...||.+..+.. .+ .+.+++.++....| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 3458899999999999999999999999999999998853210 00 12234444443333 4556
Q ss_pred cCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 725 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 725 ~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
++.| +.+.|+ +..+..|+ ..+|-+|++||+++|||+|++|-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 7776 455553 34455566 25778899999999999999983
No 405
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.70 E-value=0.04 Score=62.56 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=71.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHH------HHHHHHHHHHcCCCCCCEEEccC
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSV------RHRFLSTLEQLGLESLRVDLLPL 726 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~------~~~~~~~~~~~gi~~~rv~~~~~ 726 (921)
+.|+|-||.+...++++.++-.+.-|.+.|...||.+..+... +.. .+.+.++ + .+|..+.++
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-----~-~~~g~v~~W 334 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-----L-EEVGMIVSW 334 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-----c-cCCeEEEee
Confidence 4588999999999999999999999999999999987642110 000 1222222 2 367777788
Q ss_pred cCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 727 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 727 ~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
.| +.+.|+- ..+-.|+ ..+|.+|++||+++|||+|++|-
T Consensus 335 ~P-Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~ 373 (455)
T PLN02152 335 CS-QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPM 373 (455)
T ss_pred CC-HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 77 4444432 2233455 34888899999999999999984
No 406
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.69 E-value=0.0025 Score=43.22 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
++++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777774
No 407
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.65 E-value=0.018 Score=63.29 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=85.4
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCc
Q 002441 656 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 730 (921)
Q Consensus 656 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 730 (921)
..+.+++.++.+..... + .+..+..++.+. ++..+++...+ .+.....+.+.+.+. ++|.+.+..+ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 34556688888887777 6 555666666665 66666665542 246677777666665 2999998876 7
Q ss_pred HHHHHhcccccEEecCCCCCCcccHH-HHhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc
Q 002441 731 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 807 (921)
Q Consensus 731 ~~~~~~~~~~D~~Ld~~~~~g~~t~~-eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~ 807 (921)
.+|+.++..||+++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-+|..|.++-.+.......
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 89999999999997 6666 788 9999999999985 555555543 4455566777777666666666
Q ss_pred CH
Q 002441 808 DV 809 (921)
Q Consensus 808 d~ 809 (921)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 63
No 408
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.64 E-value=0.041 Score=60.77 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=116.9
Q ss_pred HHHHHHHHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCC------CCCccEEEecCCCCCCCcccCcc-c
Q 002441 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHV-E 628 (921)
Q Consensus 556 ~~~a~~i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG------~~~~Dy~i~d~~~~p~~~~~~~~-e 628 (921)
-++-..++..++||+|=..|+.. -+.+++.|...+-+-+.---.+.| .+..|-++++- |+....+. +
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f----~~~~~~~~~~ 154 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTF----EEAAKHLPKE 154 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEc----cchhhhCCCC
Confidence 45677899999999998777775 233344333333322222112233 34466666542 22223333 3
Q ss_pred ceEEcCCCccccCCCCCCC---CCCCCCCCCCCCeEEEecC---CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 002441 629 ELIRLPECFLCYTPSPEAG---PVCPTPALTNGFITFGSFN---NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 702 (921)
Q Consensus 629 ~~~~lp~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~---~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 702 (921)
+++..-. +-.+..... ..+...+++++..++..+. -...++.-+..++..+. ++-++++.++.. .
T Consensus 155 k~~~tG~---Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~---~ 225 (352)
T PRK12446 155 KVIYTGS---PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG---N 225 (352)
T ss_pred CeEEECC---cCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc---h
Confidence 3322110 001100000 0011123333433332322 23444444444444443 234555544331 1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCc----ccccc
Q 002441 703 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNV 777 (921)
Q Consensus 703 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~----~~~r~ 777 (921)
....+ .. . .++...+... .+.-..|..||+++ . +|++|+.|++++|+|.|..|=.. .....
T Consensus 226 ~~~~~----~~--~--~~~~~~~f~~--~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~ 291 (352)
T PRK12446 226 LDDSL----QN--K--EGYRQFEYVH--GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQIL 291 (352)
T ss_pred HHHHH----hh--c--CCcEEecchh--hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHH
Confidence 22211 11 1 1333335431 23445677799999 5 68999999999999998886422 22345
Q ss_pred hhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002441 778 GVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 778 ~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~ 813 (921)
-+..+...|....+.. +.+...+....+.+|++.++
T Consensus 292 Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 292 NAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 5677888888765543 56778888888888886653
No 409
>PLN02534 UDP-glycosyltransferase
Probab=96.59 E-value=0.03 Score=64.21 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=70.7
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH-HHHHHHcCCCCCCEEEccCcCCcHHHHHh
Q 002441 658 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQA 736 (921)
Q Consensus 658 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 736 (921)
.-|+|-||.+...+.++-+.-.+.-|+..+...||.+..+...+.....+ -+-|.+. +...++++.++.+ +.+.+
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL-- 358 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLIL-- 358 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHh--
Confidence 45889999999999988888777899999999999886321111111111 0122221 2235677788887 34433
Q ss_pred cccccE--EecCCCCCCcccHHHHhhcCCcEEecCC
Q 002441 737 YSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 770 (921)
Q Consensus 737 ~~~~D~--~Ld~~~~~g~~t~~eal~~GvPvvt~~g 770 (921)
...+| |+ ..+|.+|++||+++|||+|++|-
T Consensus 359 -~h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 359 -SHPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred -cCCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 33444 44 35788899999999999999986
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.57 E-value=0.0021 Score=66.65 Aligned_cols=90 Identities=24% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+..|.+++|++.|..+++++|.....+...+.++.++++...|++.+..+++++|+...-|-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCCC
Q 002441 425 YEQCLKIDPD 434 (921)
Q Consensus 425 ~~~al~l~P~ 434 (921)
++.+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 8888877654
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.46 E-value=0.2 Score=54.53 Aligned_cols=147 Identities=15% Similarity=0.092 Sum_probs=117.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002441 287 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (921)
.-+++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677888899999999988876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHH
Q 002441 355 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP----T--------------YAEAYNNLGVLYR 413 (921)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~p----~--------------~~~~~~~la~~~~ 413 (921)
+-+++++..+|++...|..+-..... .-.+++....|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554433 3357788888888776411 0 1346677888889
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 002441 414 DAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 414 ~~g~~~~A~~~~~~al~l~P 433 (921)
..|..+.|+..++..++++=
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
Confidence 99999999999999999854
No 412
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.8 Score=51.21 Aligned_cols=297 Identities=11% Similarity=-0.019 Sum_probs=164.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002441 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (921)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (921)
+.-..|.-+++...+-++-...+-....-......++.....+...++. +...+.+.......|+++......+..+.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 3344566666666666554443222221111122233333333333333 44455555566678999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHH-HHHHhhhhhh-hh
Q 002441 203 ELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKV-KL 278 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~lg~~~-~~ 278 (921)
..|+.+.|+..++..++..-. ..-.++.+|.++..+.++..|...+....+.+.-....+..++ -++..-.... ..
T Consensus 279 ~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~ 358 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGA 358 (546)
T ss_pred HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhc
Confidence 999988888888887761111 2345678888899999999999999988877654443333333 2222211111 12
Q ss_pred cCCHHHHHHHHHHHHH---hCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHc--C
Q 002441 279 EGDINQGVAYYKKALY---YNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDR--D 348 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~---~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~--g 348 (921)
.++-++|..+.+...+ ..|.+.. .....+.-+...+. .++.... -+..++.++..- .
T Consensus 359 ~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~~ 425 (546)
T KOG3783|consen 359 GGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSRM 425 (546)
T ss_pred ccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhcccC
Confidence 3455555554443322 2222111 11111111111110 1111111 123333333221 1
Q ss_pred CHHHHHHHHHHHH---hh-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcC
Q 002441 349 NLDKAVECYQMAL---SI-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDAG 416 (921)
Q Consensus 349 ~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p~----~~~~~~~la~~~~~~g 416 (921)
..++.. -++..+ +. ++++ .--+..+|.++..+|+...|..+++..++. ..+ .+.+++.+|.+|..+|
T Consensus 426 s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~ 504 (546)
T KOG3783|consen 426 SKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLG 504 (546)
T ss_pred ChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcc
Confidence 122222 111111 11 2222 224567899999999999999999988854 111 2679999999999999
Q ss_pred C-HHHHHHHHHHHhhcCCCC
Q 002441 417 S-ISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 417 ~-~~~A~~~~~~al~l~P~~ 435 (921)
. ..++..++.+|-+...++
T Consensus 505 g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 505 GGLKEARALLLKAREYASDY 524 (546)
T ss_pred cChHHHHHHHHHHHhhcccc
Confidence 9 999999999998877554
No 413
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=1.6 Score=45.91 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=128.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CC--CC
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DP--QN 115 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 115 (921)
.+..+......+++++++..|.+++.. .|.+ ......+|..+...|++++-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 377788888889999999999999874 2222 246788999999999988765555443221 11 11
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CC
Q 002441 116 ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DP 188 (921)
Q Consensus 116 ~~a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (921)
+.....+-... ...+....-+..+..+++......... ..-.+-..+...|...++|.+|+......+.. .+
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 22222222222 222344455555555554433222211 11223445777888899999999888776644 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 002441 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (921)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (921)
.-.+++..-..+|+...+..+|...+..|-... |.. ...-..-|.++....+|..|..+|-++++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 345667777888999999999988887775431 211 22233346667777899999999998887543
No 414
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.23 E-value=0.13 Score=53.61 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcC-CcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 657 NGFITFGSFNNLAKITPKVLQVWARILCAVP-NSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 657 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p-~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.+.+|+-.-|+..+-+ .-+++...|.+... +.++++ .+-|..++.-++++++...++.- ++++..+-....-++|+
T Consensus 144 ~~~~tIlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 144 AGKMTILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYL 221 (322)
T ss_pred CCceEEEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHH
Confidence 3456665555554444 44455555544443 444444 23333677788888888877764 37777655544469999
Q ss_pred HhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002441 735 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 813 (921)
+.++.|||..=-|.= -|--|+|=.+.+|+|||-..-.+ .-..|...|++=+-..+.= |....+
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~-----fwqdl~e~gv~Vlf~~d~L-----------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNP-----FWQDLTEQGLPVLFTGDDL-----------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCc-----hHHHHHhCCCeEEecCCcc-----------cHHHHH
Confidence 999999999866654 44448899999999999733332 2345777888875322211 222223
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002441 814 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 844 (921)
Q Consensus 814 ~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 844 (921)
+.++++...-...-.|..+.++..+..+|..
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 3333333222122226677777777666654
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.22 E-value=0.17 Score=55.66 Aligned_cols=143 Identities=16% Similarity=0.041 Sum_probs=100.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------------------CCCC---HHHHHHHHH
Q 002441 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------------------NPHC---AEACNNLGV 342 (921)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~---~~~~~~la~ 342 (921)
.+..+|-..+++..++.++..+|+.+.|.+++++|+-. .+.| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668888999999999999999998888888887632 1112 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHc
Q 002441 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~la~~~~~~ 415 (921)
.+.+.|-+..|.++.+-.+.++|. ++- +.+.+-....+.++++--++.++....... ..+...+.++.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778888888888888888888888 655 344444445566777766666666544211 1235667777777777
Q ss_pred CCH---------------HHHHHHHHHHhhcCCC
Q 002441 416 GSI---------------SLAIDAYEQCLKIDPD 434 (921)
Q Consensus 416 g~~---------------~~A~~~~~~al~l~P~ 434 (921)
++. ++|...+++|+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 777 7788888888877774
No 416
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.20 E-value=0.015 Score=59.21 Aligned_cols=78 Identities=26% Similarity=0.210 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 124 (921)
++...+..|.-....|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 444555666677777888888888888888888888888888877777777777878888888788877777665543
No 417
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.19 E-value=0.023 Score=62.49 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=74.7
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC------------CCCCcc
Q 002441 686 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF------------PYAGTT 753 (921)
Q Consensus 686 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~------------~~~g~~ 753 (921)
.|+.+|++.|.+... . .. .++|.|.|.++ .++....|.. |+.|-+. .++...
T Consensus 188 ~~~~~l~i~G~g~~~----~---------~~-~~~V~f~G~~~-~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~ 251 (333)
T PRK09814 188 SQGIKLTVFGPNPED----L---------EN-SANISYKGWFD-PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPH 251 (333)
T ss_pred CCCCeEEEECCCccc----c---------cc-CCCeEEecCCC-HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchH
Confidence 578899998866321 1 22 37999999987 5777766665 6554222 356666
Q ss_pred cHHHHhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002441 754 TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 822 (921)
Q Consensus 754 t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 822 (921)
-+.++|++|+|||+...... +-+... +-..+++.+.++..+....+ +.+.+.++++..++.
T Consensus 252 K~~~ymA~G~PVI~~~~~~~-----~~~V~~-~~~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 252 KLSLYLAAGLPVIVWSKAAI-----ADFIVE-NGLGFVVDSLEELPEIIDNI--TEEEYQEMVENVKKI 312 (333)
T ss_pred HHHHHHHCCCCEEECCCccH-----HHHHHh-CCceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHHHH
Confidence 78999999999998433211 122333 33345566888887777774 456778888888775
No 418
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.14 E-value=0.043 Score=60.24 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=86.6
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002441 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~ 748 (921)
.++-|.++++-.++.+..|+-++++-..+ ....+.+.+.+...+.+.. +.+.. .+-...+..||++|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDVS-IVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCCe-EEEcC-----CchHHHHHhCcchh----
Confidence 45669999999999999999999986533 2333345555666655433 33221 12233455699998
Q ss_pred CCCcccHHHHhhcCCcEEe-cCCCcccccchhHHH--hhcCCc----------cccc--CCHHHHHHHHHHHhcCHHHHH
Q 002441 749 YAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLL--TKVGLK----------HLIA--KNEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvvt-~~g~~~~~r~~~~~l--~~~gl~----------~~ia--~~~~~y~~~a~~l~~d~~~~~ 813 (921)
-..||.|+|+..+|+|.|. -....+--.++--++ .-+||+ |++- -+++.-.+.+..+..|.+.+.
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 6789999999999999554 333322222222221 124554 4442 367777788888889987655
Q ss_pred HHHHHHHH
Q 002441 814 NLRMSLRD 821 (921)
Q Consensus 814 ~~r~~~~~ 821 (921)
..+...+.
T Consensus 346 ~~~~~~~~ 353 (373)
T PF02684_consen 346 KQKELFRE 353 (373)
T ss_pred HHHHHHHH
Confidence 54444433
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.08 E-value=3.2 Score=46.13 Aligned_cols=104 Identities=9% Similarity=0.010 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (921)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p~~~~~~~~l 408 (921)
++....-..+-..+.+.+-+.+|.+.|.+...+-|-....+..+..+-.. .-+...+.++|+.++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44455555666777788888888888888888877776666665554332 2347778889999998888888999888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc-CCC
Q 002441 409 GVLYRDAGSISLAIDAYEQCLKI-DPD 434 (921)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~l-~P~ 434 (921)
-..-...|..+.+-..|.+|++. .|+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhChh
Confidence 88888899999998888888763 444
No 420
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.05 E-value=0.053 Score=59.25 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCc-ccccchhHHHhhcCCcccccCCH
Q 002441 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNE 795 (921)
Q Consensus 719 ~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia~~~ 795 (921)
++|.+.+..+ .++...+..||+++-. +|.+|++||+++|+|+|..+-.. +....-+-.|...|+...+-.+.
T Consensus 229 ~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 229 ENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 6888887654 4677777889999943 56678999999999999988642 34556777788888886654433
No 421
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=2.5 Score=44.45 Aligned_cols=208 Identities=17% Similarity=0.101 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHH
Q 002441 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (921)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (921)
...+......+++++++..|...+.. .|.+ -.....++.+|.+.|+..+-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45556666677788999999888874 2221 24567899999999998876665554432211111110
Q ss_pred HHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 002441 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------RP 222 (921)
Q Consensus 156 la~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 222 (921)
.+.+...+-. +....+....-+..+..+++..... -..-..+..+|...++|.+|+......+.. .+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111112211 1222344455566666665542221 223346788999999999999988877642 22
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh
Q 002441 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (921)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 295 (921)
.-.+++..-..+|....+..+|...+..|-.....-.-.....+.+-..-|-.+....+|..|..+|-++++-
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 3356677778888899999999888877654322110011112333334455556667788888888777754
No 422
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.00 E-value=0.077 Score=57.01 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=121.2
Q ss_pred HHhCCccEEEecCCCCCCCchhhhhcCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccCcccceEEcCCCccccC
Q 002441 562 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 641 (921)
Q Consensus 562 i~~d~idiLvdl~g~t~~~r~~~~a~r~APvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~ 641 (921)
+.....|++|=..+.|...-+.+=.....++.+..++.|..- ...+|++|+-.+-.++ -..+++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 444679999977766654444333344676788889999665 8899999974332221 2345666665433222
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 002441 642 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 711 (921)
Q Consensus 642 ~~~~~~~~----~~~~~--~~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 711 (921)
|....... ..... -+-..|.+|--+..++++++ +++...++.+..+ ..++|....-..+.+.+.|.+.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 22111100 00111 23345778888899999998 4555566777776 55666544333445666666655
Q ss_pred HHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccc
Q 002441 712 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 777 (921)
Q Consensus 712 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 777 (921)
. +...+.+....+ ..-|++.+..||.++-|--. -+=..||++.|+||..++-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334444 34588888999999855322 22368999999998887655433444
No 423
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.99 E-value=4.1 Score=46.74 Aligned_cols=173 Identities=19% Similarity=0.133 Sum_probs=85.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Q 002441 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------ACAHTHCGILYK 127 (921)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~ 127 (921)
.+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +.- ..--...+.+-.
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence 33444456677666 34444 5788888888888877777777777654211 110 000122344444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 205 (921)
--|++++|.+.|-.+-+.+ ++ ...+.+.|++-...+.++..-.-+ .....++.++|..+..+.
T Consensus 746 ~~g~feeaek~yld~drrD---------LA------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD---------LA------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred hhcchhHhhhhhhccchhh---------hh------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4577777777764432110 00 011222344444444333211110 111344555555555555
Q ss_pred CHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002441 206 QYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (921)
Q Consensus 206 ~~~~A~~~~~~a----------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (921)
.+++|.++|.+. ...-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 811 ~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 555555555443 122345555555566666666666666655543
No 424
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.95 E-value=0.024 Score=57.79 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=61.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHH
Q 002441 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 378 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~ 444 (921)
..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-++|-+|+.++|.+.+|..|+.-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999999887643
No 425
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.94 E-value=0.013 Score=39.58 Aligned_cols=29 Identities=34% Similarity=0.681 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (921)
++.+|.++..+|++++|+++|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444444444444444444333
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.93 E-value=0.34 Score=53.36 Aligned_cols=103 Identities=18% Similarity=0.001 Sum_probs=66.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHHHH
Q 002441 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGIL 125 (921)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~la~~ 125 (921)
+..+|-+.+++..++.++..+|+.+.|.+.+++|+-. ++ .| -.+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4678999999999999999999999998888888632 11 11 1234445566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002441 126 YKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (921)
+.+.|-+..|.++.+-.+.++|. ++-. ++..+-....+.++++--++.++..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g------~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLG------VLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcch------hHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 66777777777777777777777 3332 1222222333445555555555443
No 427
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.91 E-value=0.056 Score=47.23 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 002441 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (921)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~ 119 (921)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888766 566667777765542 2358899999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002441 120 THCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888887765
No 428
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.91 E-value=0.0065 Score=41.85 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666664443
No 429
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.90 E-value=0.27 Score=49.51 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHcC
Q 002441 61 RNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQNA-CAHTHCGILYKDEG 130 (921)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~a~~~la~~~~~~g 130 (921)
..+.++|+.-|+++++..++.. .++-.+..+.+.+++|++-++.|.+.+..- .+.. .....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999988754 477778889999999999999988877531 1111 11111111112333
Q ss_pred CHHHHHHHHHHHHhcC--CCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHHH
Q 002441 131 RLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYYN 196 (921)
Q Consensus 131 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~ 196 (921)
+.+--.+.|+..+..- ..+...|+ ..-..+|.+++..+.|.+-.+.+.+.-.... ...++|..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 4444444454443321 11111111 1134567777777888777777666544311 12455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 002441 197 LGVVYSELMQYDTALGCYEKAALERPMY--AEAYC----NMGVIYKNRGDLESAIACYERCLAVSPN 257 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (921)
-..+|..+.+..+-...|++++.+...- +.+.- .=|..+.+.|++++|..-|-++.+...+
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 6778888888888888999998775432 22221 1245677889999999888888876544
No 430
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.88 E-value=0.014 Score=39.12 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666777777777777777777666665
No 431
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=4.3 Score=45.64 Aligned_cols=84 Identities=6% Similarity=-0.089 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002441 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (921)
Q Consensus 101 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (921)
..+.+....+..|+++......+.++...|+.+.|+..++..++ ..........++.+|.++.-+.+|..|-..+
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444455666666666666666666666666666666554 2222223444566666666666666666666
Q ss_pred HHHHhhCCC
Q 002441 181 YEALKIDPH 189 (921)
Q Consensus 181 ~~al~~~p~ 189 (921)
....+.+.-
T Consensus 327 ~~L~desdW 335 (546)
T KOG3783|consen 327 DLLRDESDW 335 (546)
T ss_pred HHHHhhhhh
Confidence 666555433
No 432
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=1.6 Score=49.88 Aligned_cols=253 Identities=14% Similarity=0.045 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHH---HHHHHHHHHcCChH
Q 002441 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (921)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~lg~~~~~~g~~~ 174 (921)
.++|+++. +.+| ++..|..+|......-.++-|...|-+.-.. +.-.- ...+..++ ...+.+-..-|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~-vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKL-VKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhH-HHHhhhhhhHHHHhHhHhhhhcchh
Confidence 44555443 3344 6889999999888888888888877665321 11100 00011111 12233344458899
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002441 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (921)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (921)
+|.+.|-.+-..+ .-..++.+.|+|-...++++..-... .....++.++|..+..+..+++|.++|.+.-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886543221 12345667777777666665422111 1235689999999999999999999998764
Q ss_pred HhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002441 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (921)
Q Consensus 253 ~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (921)
.. .++..+++.+ ..+++ ++.....-|++...+-.+|.++...|.-++|.+.|-+.- .|.
T Consensus 824 ~~--------e~~~ecly~l-------e~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DT--------ENQIECLYRL-------ELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred ch--------HhHHHHHHHH-------Hhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 32 2334445443 23333 233444567888888889999999999999988775531 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002441 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (921)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 394 (921)
+ -...+..++++.+|.++.++-- -|.-.......+.-+...++..+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1123445566667766554421 1222222233333455566666666666655
No 433
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.72 E-value=6.6 Score=46.95 Aligned_cols=124 Identities=10% Similarity=-0.050 Sum_probs=83.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 306 LGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (921)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 381 (921)
++..-....+.+.|...+.+......-+ ..+...+|.-....+...+|..++..+..... +.........+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 3444445667788888888764444322 23344455444444336788888887654332 333444444455688
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002441 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (921)
Q Consensus 382 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (921)
++++.+..++...-....+.....+.+|..+..+|+.++|..+|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998888888775444445678999999999999999999999999854
No 434
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.68 E-value=0.044 Score=59.19 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=109.4
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (921)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (921)
...|+.-.|-+-+..++...|..+......+.+....|+|+.|...+..+-+.-..-..+...+-.-...+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34577777777777888888888888888888888888888888877766555444444555555667788889999888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHHhhhccCCC
Q 002441 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (921)
Q Consensus 391 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a~~~~~~~~ 453 (921)
.+-.+...-+++++...-+..-..+|-+++|.-++++.+.++|....-+.|.+....|..+|+
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 888887777777777766777778888999999999999999888777777777777777665
No 435
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.62 E-value=7.1 Score=46.67 Aligned_cols=323 Identities=7% Similarity=-0.088 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
.+..+..|....+.|++.++.++..++ ..+|- ..+...-......+. .....+...++..|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467899999999999999987776663 44443 222222222222221 1222455667778887665544444333
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002441 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (921)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (921)
+.+++..-+.++ ...|.+... ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344554444422 123444332 222334456668877777666666544433333333333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHH-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhh
Q 002441 205 MQYDTALGCYEKAALERPMYAEAYCNMGV-----------IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (921)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 272 (921)
|......-.-+--+.....+......+.. .... ..+...+...+ ...+............+..+
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTTGPTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hccCCChhhHHHHHHHHHHH
Confidence 33222221111111111111111111111 1111 11111111111 11111110111111222222
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002441 273 GTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (921)
Q Consensus 273 g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (921)
...+.+.|...+.+......-.. .+...+|.-....+...+|...+..+..... +....-....+....+
T Consensus 253 -----ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 253 -----ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred -----HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 35677888888887654443332 2344444444444336677777776554322 3333444444556888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002441 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 396 (921)
+++.+...+...-....+.....+-+|.++...|+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888888775444445677889999999999999999999999844
No 436
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.62 E-value=1.6 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.006 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIV 74 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~a 74 (921)
...|-.+|...+..=+++-|.+.|.++
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345677777777777888888877775
No 437
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=95.59 E-value=0.45 Score=56.07 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=102.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCcEEEEecCCCCCHH----HHHHHHHHHHHcCCCCCCEEEccCc
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~~~----~~~~~~~~~~~~gi~~~rv~~~~~~ 727 (921)
+.+++|...|+ +|..+-++....++++ .. .+.++++.|++...+. ..+.+....++-.+ ++||+|...
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~- 465 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLEN- 465 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcC-
Confidence 34567777766 8988888888777764 21 3578888887643322 33344433332223 479999765
Q ss_pred CCcHHHHH--hcccccEEec-CC-CC-CCcccHHHHhhcCCcEEecC-CCcccccchhHHHhhcCCcccc----------
Q 002441 728 LLNHDHMQ--AYSLMDISLD-TF-PY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHLI---------- 791 (921)
Q Consensus 728 ~~~~~~~~--~~~~~D~~Ld-~~-~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~i---------- 791 (921)
...-++ .+..|||+|- |. || ..||+-+=||.-|++.+|.. |-.-..-- |-..|.
T Consensus 466 --Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~--------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 466 --YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD--------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred --CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC--------CCcEEEECCCcccccc
Confidence 233333 4578999999 77 48 88999999999999988754 32111100 111121
Q ss_pred ----cCCHHHHH---HHHH-HHhcC-HHH--HHHHHHHHHHHhhc-CCCCChHHHHHHHHHHH
Q 002441 792 ----AKNEDEYV---QLAL-QLASD-VTA--LANLRMSLRDLMSK-SPVCDGQNFALGLESTY 842 (921)
Q Consensus 792 ----a~~~~~y~---~~a~-~l~~d-~~~--~~~~r~~~~~~~~~-~~l~~~~~~~~~~e~~~ 842 (921)
..|.+++. +.++ .+-.| ++. -..+.+-.+..|.+ .|.|++.++++...+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 13334433 3344 44433 211 12344444444543 56899999999988876
No 438
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.58 E-value=4.7 Score=44.30 Aligned_cols=135 Identities=11% Similarity=0.005 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
++..-.-.......|+.-.|-+....++...|.++......+.+...+|.|+.|...+..+-+.-.....+...+-....
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 33333444555778999999999999999999999999999999999999999999887766654444556666677788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002441 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (921)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (921)
..|++++|...-+-.+...-+.++. ...-+......|-++++.-++++.+.++|.
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8999999999888888765555543 222233344568899999999999988765
No 439
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=95.55 E-value=0.038 Score=62.79 Aligned_cols=108 Identities=21% Similarity=0.180 Sum_probs=63.9
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchh---HHHhhcCCc-----ccccCCHHHHHHHH
Q 002441 732 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTKVGLK-----HLIAKNEDEYVQLA 802 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~---~~l~~~gl~-----~~ia~~~~~y~~~a 802 (921)
+|-....-||+.+=|+-| .=|-|-+|+.+||||.|| ++.++ -+...++-+ ..|-+....|-+.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-------TnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-------TNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-------ETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceee-------ccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHH
Confidence 444444559999988877 789999999999999999 44431 111111100 13334444444444
Q ss_pred HHHhc--------CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002441 803 LQLAS--------DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 849 (921)
Q Consensus 803 ~~l~~--------d~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~ 849 (921)
-+|+. ++..+..+|.+.+.. |.++||+.|...+++||..+.++-
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 44443 455555556555433 788999999999999999888774
No 440
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=0.35 Score=52.74 Aligned_cols=145 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------CEEEccCcCCcHHHHH
Q 002441 669 AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLLPLILLNHDHMQ 735 (921)
Q Consensus 669 ~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~------------rv~~~~~~~~~~~~~~ 735 (921)
....++ .++++.+++++.||..|+++-.. ++--..+.+.++++|+... .|.+... -.+...
T Consensus 240 H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l 313 (419)
T COG1519 240 HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGL 313 (419)
T ss_pred CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHH
Confidence 666666 88999999999999999998532 2334556677777776432 3333222 257888
Q ss_pred hcccccEEec--CCCCCCcccHHHHhhcCCcEEecCCCcc-cccchhHHHhhcCCcccccCCHHHHHHHHHHHhc-CHHH
Q 002441 736 AYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVH-AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS-DVTA 811 (921)
Q Consensus 736 ~~~~~D~~Ld--~~~~~g~~t~~eal~~GvPvvt~~g~~~-~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~-d~~~ 811 (921)
.|.++||+.- ||--.||--.+|++++|+|||+ |... --+..+-.|...|-. ++++| ++.+..++.+.. |++.
T Consensus 314 ~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~ga~-~~v~~-~~~l~~~v~~l~~~~~~ 389 (419)
T COG1519 314 LYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQAGAG-LQVED-ADLLAKAVELLLADEDK 389 (419)
T ss_pred HHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhcCCe-EEECC-HHHHHHHHHHhcCCHHH
Confidence 8999999853 3322666679999999999998 4322 112222222232322 44566 666666666554 5877
Q ss_pred HHHHHHHHHHHh
Q 002441 812 LANLRMSLRDLM 823 (921)
Q Consensus 812 ~~~~r~~~~~~~ 823 (921)
+.++++...+-+
T Consensus 390 r~~~~~~~~~~v 401 (419)
T COG1519 390 REAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHHHHHH
Confidence 777776655543
No 441
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.54 E-value=0.29 Score=54.39 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccchhHH
Q 002441 702 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 781 (921)
Q Consensus 702 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 781 (921)
..++.+.+... + .++|.+.+..+ ..+++.++..||+++ -+++...-||..+|+|||++.+ ...+|..
T Consensus 249 ~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~--- 315 (365)
T TIGR03568 249 IINEAIEEYVN--E--HPNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR--- 315 (365)
T ss_pred HHHHHHHHHhc--C--CCCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh---
Confidence 45555544421 1 36899999877 789999999999999 5443556899999999998753 2233321
Q ss_pred HhhcCCccc-ccCCHHHHHHHHHHHhcCH
Q 002441 782 LTKVGLKHL-IAKNEDEYVQLALQLASDV 809 (921)
Q Consensus 782 l~~~gl~~~-ia~~~~~y~~~a~~l~~d~ 809 (921)
|-.-+ |..|.++-++.+.+ +.++
T Consensus 316 ----g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 316 ----ADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred ----cCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 33333 55688888877776 4554
No 442
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.44 E-value=0.74 Score=46.51 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H
Q 002441 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--S 368 (921)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 368 (921)
...+|.+|+..++|.+-.+.+++.-.... .-.++|..-...|..+++..+-...|++++.+...- +
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34578888888888777776666554311 124556566677778888888888888888775432 2
Q ss_pred HH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHHHHHHHHHcC
Q 002441 369 QS----LNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PTYAE--AYNNLGVLYRDAG 416 (921)
Q Consensus 369 ~~----~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~~~~--~~~~la~~~~~~g 416 (921)
.+ .-.=|..+.+.|++++|-..|=+|.+.. |.... -|..||..+.+.|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 22 2223456777888888888777777653 22222 3455666666654
No 443
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.34 E-value=0.032 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 002441 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (921)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 444
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.32 E-value=0.27 Score=46.37 Aligned_cols=87 Identities=13% Similarity=-0.050 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002441 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (921)
Q Consensus 47 ~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 126 (921)
-...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35668888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHH
Q 002441 127 KDEGRLV 133 (921)
Q Consensus 127 ~~~g~~~ 133 (921)
...|+..
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888754
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=4.4 Score=41.56 Aligned_cols=216 Identities=13% Similarity=-0.014 Sum_probs=121.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002441 52 LSYANILRSRNKFVDALALYEIVLEKDSG--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (921)
Q Consensus 52 l~~A~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 123 (921)
+.+|+...+.+++++|+..|.+++..... .......++..|...|++..--+.....- +++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 77899999999999999999999876221 23466778888888888765444332221 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002441 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (921)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (921)
-.+..+..+..++..|..++.......+...+..... .+-...++. ..-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-----rEkr~fLr~---------~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-----REKRKFLRL---------ELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHh
Confidence 1122334445555555444332222111111100000 011112222 223457788899
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhh
Q 002441 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (921)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 277 (921)
.|+|.+|+......+.. .+.-..++..-..+|....+..++...+..+-.....-.-.....+.+-..-|-...
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776542 344566777778888888888888777766644321100000111223333455556
Q ss_pred hcCCHHHHHHHHHHHHHhC
Q 002441 278 LEGDINQGVAYYKKALYYN 296 (921)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~ 296 (921)
...+|..|..+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 6678888888888887653
No 446
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.71 Score=52.04 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=106.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002441 314 LKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (921)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 391 (921)
+....++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444666777777788888777544 4777777888889999999999999999999999999988887776666555
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHHHH
Q 002441 392 EK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 392 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l~a 445 (921)
.+ +....|.+.+....+ +.....+|+..++....+++.++.|+++.+...++.+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 888899887766555 8888999999999999999999999998777665544
No 447
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.98 E-value=0.047 Score=37.53 Aligned_cols=25 Identities=48% Similarity=0.844 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMAL 361 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al 361 (921)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555533
No 448
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.95 E-value=12 Score=46.25 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=89.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHhHH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (921)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (921)
-.++...+.|+.|+..|++.-...|...+.+. ..+..+...+........+++|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 35677788999999999999999987665433 233333333322222235778888887653 35666777889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCh
Q 002441 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (921)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 258 (921)
+|..+|++++-+++|.-+++..|+++..-...-.+-+++ .+-..|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999888765433322222221 12334555555556665653
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.82 E-value=0.3 Score=41.75 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 002441 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV 133 (921)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~ 133 (921)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556777788888888888888888888888888888888888877654 344444444554455433
No 450
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.78 E-value=0.047 Score=53.68 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=59.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhH
Q 002441 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (921)
Q Consensus 376 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 442 (921)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 3456778999999999999999999999999999999999999999999999999999987655443
No 451
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=94.77 E-value=0.77 Score=55.40 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=71.1
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHHHHHHHHHHHHH----cCCCCCCEEEccCc
Q 002441 658 GFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSVRHRFLSTLEQ----LGLESLRVDLLPLI 727 (921)
Q Consensus 658 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~~~~~~~~~~~~~~~----~gi~~~rv~~~~~~ 727 (921)
+.+|+|-.-|+ +|...-++....++.+-+ ...++++.|++...+..-..+.+.+.+ -.+ ++||+|++-
T Consensus 477 d~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfle~- 554 (778)
T cd04299 477 NVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFLED- 554 (778)
T ss_pred CccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEEcC-
Confidence 44566666665 888888887766654311 236788877665433333333333332 233 369999765
Q ss_pred CCcHHHHH--hcccccEEecCCC--C-CCcccHHHHhhcCCcEEecC
Q 002441 728 LLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMA 769 (921)
Q Consensus 728 ~~~~~~~~--~~~~~D~~Ld~~~--~-~g~~t~~eal~~GvPvvt~~ 769 (921)
+...++ .+.-|||.|.|+- + ..||+-+=|+.-|++.++.-
T Consensus 555 --Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvl 599 (778)
T cd04299 555 --YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVL 599 (778)
T ss_pred --CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecc
Confidence 334444 4477999999994 7 88999999999999988643
No 452
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.72 E-value=0.14 Score=38.61 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 002441 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (921)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 119 (921)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555555443
No 453
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.66 E-value=0.28 Score=57.29 Aligned_cols=147 Identities=17% Similarity=0.132 Sum_probs=85.4
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcE-EEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHH
Q 002441 659 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 734 (921)
Q Consensus 659 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 734 (921)
.++|-||.... .+.++.....+..+...|+-. +|...... ... +.+.+... +...|++.++.| +.+.+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~-~~~----~~~~~~~~--~~~nV~~~~W~P-Q~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD-SIY----FPEGLPNR--GRGNVVLSKWAP-QNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc-chh----hhhcCCCC--CcCceEEecCCC-cHHHh
Confidence 46688888777 899999999999999987776 45443321 111 11111111 234688888988 45555
Q ss_pred HhcccccEEecCCCCCCcccHHHHhhcCCcEEecC--CCcccccchhHHHhhcCCcc-cccC--CHHHHHHHHHHHhcCH
Q 002441 735 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIAK--NEDEYVQLALQLASDV 809 (921)
Q Consensus 735 ~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~ia~--~~~~y~~~a~~l~~d~ 809 (921)
.....+..|+ -.+|=++|+|+++.|||+|++| |+.+.. +-++..-|... ++-. +..+.......+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 3333344444 2466668999999999999776 665543 22333333322 2222 2222344455556666
Q ss_pred HHHHHHHHHH
Q 002441 810 TALANLRMSL 819 (921)
Q Consensus 810 ~~~~~~r~~~ 819 (921)
+..+..++-.
T Consensus 424 ~y~~~~~~l~ 433 (496)
T KOG1192|consen 424 EYKEAAKRLS 433 (496)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 454
>PRK10941 hypothetical protein; Provisional
Probab=94.66 E-value=0.36 Score=50.51 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3344455555556666666666666666665555555566666666666666655555555555554433
No 455
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.63 E-value=0.54 Score=44.42 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002441 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (921)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 415 (921)
.+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 44555566667778888888888877888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 002441 416 GSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 416 g~~~~A~~~~~~al~l~P 433 (921)
|+.. =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 8754 2333444555544
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.55 E-value=1.2 Score=39.38 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=55.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCH---
Q 002441 345 KDRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA--- 402 (921)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~--- 402 (921)
...|-|++|...++++++.... +.-++-.|+.++..+|+|++++...++++. ++.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3446666777777766665321 123556677777777777777666666654 344433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 403 -~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.+.++.+..+..+|+.++|+..|+.+-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 35567888888999999999999887654
No 457
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.36 Score=50.60 Aligned_cols=124 Identities=15% Similarity=0.262 Sum_probs=93.1
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEE-ccCcCCcHHHHHhcccccEEecCCCCCCc----ccHHHHhh
Q 002441 686 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHMQAYSLMDISLDTFPYAGT----TTTCESLY 760 (921)
Q Consensus 686 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~----~t~~eal~ 760 (921)
.|+-..+|-|+| +.++...+...+.... +|.| +|+.. -+||-..++.||+.+.=...+.| .-.+|..-
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~~--~v~~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFG 363 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNLQ--HVQVCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFG 363 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhccc--ceeeeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhc
Confidence 476666776766 7888898989888775 4443 45554 58999999999975443333333 35899999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 002441 761 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 822 (921)
Q Consensus 761 ~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 822 (921)
||+||+++.=.+.-. |..-|-..+|..|-++..+...-|.+ |...+.+++..+++.
T Consensus 364 cglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 364 CGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999999855443322 33447788999999999999999998 899999999988876
No 458
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.50 E-value=0.21 Score=37.59 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhh
Q 002441 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (921)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 438 (921)
+.+|..+.++|++++|..+.+.+|+++|+|..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444444444444444444444444444433
No 459
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.48 E-value=0.34 Score=41.36 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002441 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 387 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3566778888888888888888888888888888888888888888776
No 460
>PRK10941 hypothetical protein; Provisional
Probab=94.44 E-value=0.47 Score=49.64 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHHH
Q 002441 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (921)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (921)
...++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34455666677777777777777777777777777777777777777777777777777777776665443
No 461
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.42 E-value=0.35 Score=42.39 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 386 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.+++.+.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3677777888888887777777777766666677777777777654
No 462
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.34 E-value=0.41 Score=48.37 Aligned_cols=91 Identities=24% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHH-------HHHHHHHhhCCC------CHHHHHH
Q 002441 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI-------QKYYEALKIDPH------YAPAYYN 196 (921)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~-------~~~~~al~~~p~------~~~~~~~ 196 (921)
..+++|++.|.-++-...-...-...+|.++..++.+|...++.++.. +.|.++++.... ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345556655555543211101111134556666777776666644333 333333332211 1344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 197 LGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
+|.++.+.|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 566666666666666666555544
No 463
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.19 E-value=0.072 Score=34.67 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002441 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (921)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 434 (921)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5666777777777777777777777776664
No 464
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=94.19 E-value=2.9 Score=45.45 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=40.4
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEec-CCCcccccchhHHHhhcCCcccccCCHHHHHH
Q 002441 732 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 800 (921)
Q Consensus 732 ~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~-~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~ 800 (921)
+.+.++.-||+++ -+|||.+.||..+|+|+|.+ +|..+. +. -.|...|+ =+-..|.++-+.
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-eEecCCHHHHHH
Confidence 3445556688998 89999999999999999973 344211 11 23555576 233567777666
No 465
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.11 E-value=0.37 Score=59.31 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=124.3
Q ss_pred HhhhhhhhhcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCH
Q 002441 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (921)
Q Consensus 270 ~~lg~~~~~~~~~~~A~~------~~~-~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 334 (921)
...|.....++.+.++.+ ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444455666776666 444 223446778889999999999999999999988877654 34557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 002441 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (921)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------- 399 (921)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999998876 355556778899999999999999999999998642
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002441 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (921)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 431 (921)
.....+..+++++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 22456777888888888888888777766554
No 466
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.95 E-value=1.4 Score=38.86 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Q 002441 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (921)
Q Consensus 51 ~l~~A~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (921)
.+..|...+..|-|++|...++++++.... ++-++..++.++..+|+|++++...++++..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345677778889999999999999885322 3457888999999999999988888877753
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002441 112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA 145 (921)
Q Consensus 112 ~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (921)
+.+.. .+-+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44443 34567788899999999999999988653
No 467
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=5.8 Score=37.78 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Q 002441 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYCNMGVIYK 236 (921)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~ 236 (921)
..+.+....|+...|+..|.++-...+.- ..+...-+.++...|.|++-....+..- ..+|-...+.-.||...+
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ 178 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY 178 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH
Confidence 33444444444444444444443332210 1122333344444444444444333321 112223334444455555
Q ss_pred HCCCHHHHHHHHHHHHH
Q 002441 237 NRGDLESAIACYERCLA 253 (921)
Q Consensus 237 ~~g~~~~A~~~~~~al~ 253 (921)
+.|++.+|.+.|..+..
T Consensus 179 kagd~a~A~~~F~qia~ 195 (221)
T COG4649 179 KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccchHHHHHHHHHHHc
Confidence 55555555555544443
No 468
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=4.7 Score=38.37 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=95.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHcCC
Q 002441 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK 383 (921)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~ 383 (921)
+...++.++|+..|...-+..-.. ..+....+.+..+.|+...|+..|..+-.-.+. - ..+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345678888988888877664433 446677888999999999999999987765432 1 1244555677788898
Q ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHhhHH
Q 002441 384 MDAAAEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (921)
Q Consensus 384 ~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~l 443 (921)
|++-....+..-. .+|-...+...||..-.+.|++.+|...|.+... +...+....++.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 8887666554322 2444566778899999999999999999999887 444444444443
No 469
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.91 E-value=0.49 Score=47.85 Aligned_cols=50 Identities=20% Similarity=0.074 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhhhhhhcCCHHHHHH
Q 002441 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (921)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~ 287 (921)
...+++|++.|.-|+-...-.......+|.++..++.+|...++.+....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~ 139 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKR 139 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 34566777776666543111001111445555566666655555433333
No 470
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=93.90 E-value=2.2 Score=45.50 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=77.3
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCCEEEc-cCcCCcHHHHHh
Q 002441 660 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQA 736 (921)
Q Consensus 660 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~-~~~~~~~~~~~~ 736 (921)
|..|+-+...-.| ++++..|.+...+-+=+++--+++ .+.-++.+.+...+..-+ +++..+ ...+ -+||++.
T Consensus 188 ILvGNSgd~sNnH---ieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mp-f~eYl~l 262 (360)
T PF07429_consen 188 ILVGNSGDPSNNH---IEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMP-FDEYLAL 262 (360)
T ss_pred EEEcCCCCCCccH---HHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCC-HHHHHHH
Confidence 4444444444444 455555555444333344333343 356777788777776443 566544 4555 6899999
Q ss_pred cccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcccccchhHHHhhcCCccccc
Q 002441 737 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA 792 (921)
Q Consensus 737 ~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia 792 (921)
+..||++.=.+.= -|--|+|=.|++|+||+--.-.+ -...|...|++=+-.
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np-----~~~~l~~~~ipVlf~ 314 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP-----FWQDLKEQGIPVLFY 314 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh-----HHHHHHhCCCeEEec
Confidence 9999999977755 44458899999999999733322 344677778776644
No 471
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.81 E-value=0.83 Score=48.72 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCC
Q 002441 671 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 750 (921)
Q Consensus 671 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~ 750 (921)
..++.+....+.+..- +.++++.+.+ ..++...+..+..+ ...-+.+.+.. +-.+..+.+..+|+++-+-
T Consensus 137 w~~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~-~l~e~~~li~~~~l~I~~D--- 206 (279)
T cd03789 137 WPAERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKT-SLRELAALLARADLVVTND--- 206 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCC-CHHHHHHHHHhCCEEEeeC---
Confidence 3344555555444443 6778877654 22333333233333 22334456654 3578999999999998432
Q ss_pred CcccHHHHhhcCCcEEecCCCcccccch
Q 002441 751 GTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 751 g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
+-+.-=|.++|+|+|++-|.+...+.+
T Consensus 207 -sg~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 207 -SGPMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred -CHHHHHHHHcCCCEEEEECCCCccccC
Confidence 222333458899999999988777753
No 472
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=3.6 Score=46.86 Aligned_cols=188 Identities=16% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002441 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (921)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (921)
++..+...+..--.-.......+..-.-.-.+.-+.+.+.+.......-...-..+...-.+.=.-++-.+.|..--...
T Consensus 264 ~V~~~~~~~~~~~~i~~l~~~~~~~s~~~~~~~~i~~~~~~~~~~~~g~~~~sr~l~~~~~~L~~dE~I~e~F~~~~t~~ 343 (872)
T KOG4814|consen 264 SVDVISNFQAVIASINDLSKMNTKFSIVCLDYLLINKLNSKNDSKFLGKAICSRFLITTQSKLMNDEEIAESFENFSTQM 343 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002441 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE 220 (921)
Q Consensus 147 p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (921)
.-..+....+-.++.+.+.-.++..+|..+++.|...+..-|.+ +....+++.||..+.+.+.|.++++.|-+.
T Consensus 344 ~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 344 ELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 002441 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (921)
+|.++-....+-.+....++-++|+.+..+....
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
No 473
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=11 Score=38.96 Aligned_cols=203 Identities=10% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---HHhh--CCCCHHH
Q 002441 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKI--DPHYAPA 193 (921)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~---al~~--~p~~~~~ 193 (921)
..+++-..+.+++++|+..|.+.+...-.- .......-.....++.+|...|++..--+.... +... .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 345555666777777777777777652221 111222233456677777777776544333322 2221 1111222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------ChHH
Q 002441 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSP------NFEI 260 (921)
Q Consensus 194 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~ 260 (921)
...+-.-+ .....++.-+..+...++..... ...-..+..++++.|+|.+|+......+.... ....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 12334555555555554432111 23345677889999999999998877664321 1122
Q ss_pred HHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHh-----CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (921)
Q Consensus 261 ~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (921)
.+..-..+|.. ..+..++...+..+-.. .|... +.-..-|.......+|.-|..+|-++++-
T Consensus 167 vhllESKvyh~-------irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHE-------IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHH-------HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22222333333 33444444444333211 12111 11222344455556677777777666653
No 474
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.46 E-value=0.63 Score=42.13 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChhhHh
Q 002441 368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (921)
Q Consensus 368 ~~~~~~la~~~~~~g---~~~~A~~~l~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 440 (921)
.+..+++++++.... +..+.+.+++..++ -+|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456777777777654 45567778888876 44433 467778888888888888888888888888888877653
No 475
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.29 E-value=0.22 Score=52.83 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCC
Q 002441 671 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 750 (921)
Q Consensus 671 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~ 750 (921)
....+.++...+++..|+..|+++-.|........ ..+.+.--...++.+..... ..+. +..||.++ --
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~L---l~~s~~Vv----ti 206 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNLPNVVIIDDDVN-LYEL---LEQSDAVV----TI 206 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcCCCeEEECCCCC-HHHH---HHhCCEEE----EE
Confidence 44567788888899999999999987632111111 22222211224454444332 3444 44588887 66
Q ss_pred CcccHHHHhhcCCcEEec
Q 002441 751 GTTTTCESLYMGVPCVTM 768 (921)
Q Consensus 751 g~~t~~eal~~GvPvvt~ 768 (921)
.+|+.+|||.+|+||||+
T Consensus 207 nStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 207 NSTVGLEALLHGKPVIVF 224 (269)
T ss_pred CCHHHHHHHHcCCceEEe
Confidence 788999999999999994
No 476
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=0.075 Score=54.38 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=97.5
Q ss_pred HHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccH
Q 002441 676 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 755 (921)
Q Consensus 676 ~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~ 755 (921)
+..|++|...+|--.||-.. .++...-....+|=+.-++.|. .+.|-..++.+|++| =-.||.+
T Consensus 260 vvfw~ai~~~lpl~~l~~l~-------e~~gWq~~ad~~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAt 323 (412)
T COG4370 260 VVFWAAIAPELPLLLLWTLE-------ERQGWQPLADRFGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTAT 323 (412)
T ss_pred HHHHhccCcCCCHHHHHHHH-------HhcCcchhhhhhccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchH
Confidence 56677777666643333210 1111111111234444455553 456777777799877 4578899
Q ss_pred HHHhhcCCcEEecCCC--cccccchhHHHhhcCCcccccCCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002441 756 CESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQ 832 (921)
Q Consensus 756 ~eal~~GvPvvt~~g~--~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~l~~~~ 832 (921)
=++.-.|+|||..||. .+.--.+..-.+-+|..=.....++.-.+.+++ +..|++++.++|+.-++|+- .+
T Consensus 324 EQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiG------qa 397 (412)
T COG4370 324 EQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIG------QA 397 (412)
T ss_pred HHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChHHHHHHHhcchhhcc------Cc
Confidence 9999999999999985 333223333456678776666776666777777 99999999999988888863 23
Q ss_pred HHHHHHHHHHHHHH
Q 002441 833 NFALGLESTYRNMW 846 (921)
Q Consensus 833 ~~~~~~e~~~~~~~ 846 (921)
+-++++.+...+||
T Consensus 398 Gaa~rIAe~l~e~a 411 (412)
T COG4370 398 GAARRIAEELGEMA 411 (412)
T ss_pred chHHHHHHHHHHhc
Confidence 56777777777776
No 477
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.18 E-value=1.6 Score=39.61 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (921)
Q Consensus 334 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 408 (921)
.+..+++++++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.+.+..++..|++.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456667777776654 45567777777775 3333 245677778888888888888888888888888876665443
No 478
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.17 E-value=0.11 Score=50.62 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=56.0
Q ss_pred CCEEEccCcCCcHHHHHhcccccEEecCCCC-CCcccHHHHhhcCCcEEecCCCcc---cccchhHHHhhcCCccccc--
Q 002441 719 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 792 (921)
Q Consensus 719 ~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia-- 792 (921)
.+|.+.+..+.-.++++. +||++ . +|++|+.|++.+|+|.|..|-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~~m~~~m~~---aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAA---ADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSSHHHHHHH---HSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhhHHHHHHH---cCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 578888886644455554 99998 5 667899999999999887765541 1222344566666655442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHH
Q 002441 793 -KNEDEYVQLALQLASDVTALANLR 816 (921)
Q Consensus 793 -~~~~~y~~~a~~l~~d~~~~~~~r 816 (921)
.+.+...+....+.+++..+..+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 335667777778888886654443
No 479
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.15 E-value=0.25 Score=54.45 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002441 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (921)
+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+.++..++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 4556677777777777777777777777776663 4556677777777777777777788888888888888888777
Q ss_pred HHHHhhcCCCC
Q 002441 425 YEQCLKIDPDS 435 (921)
Q Consensus 425 ~~~al~l~P~~ 435 (921)
...+....|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 77666666644
No 480
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.10 E-value=1.1 Score=43.84 Aligned_cols=103 Identities=11% Similarity=-0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 002441 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (921)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (921)
.++..+|..|.+.|++++|++.|.++...... ..+.++.+..+....+++.....++.++-..-... ..+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 57788899999999999999999987775433 24567777888888899999888888886654331 113333444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002441 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (921)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (921)
....|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 444555666667777777777655443
No 481
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.00 E-value=1.1 Score=55.38 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHhCCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Q 002441 46 FEGKDALSYANILRSRNKFVDALA------LYEI-VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (921)
Q Consensus 46 ~~~~~~l~~A~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (921)
.+.+...+.+......|.+.+|.+ ++.. .-...|.....+..++..+...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 467788888999999999998887 5553 23357888899999999999999999999988887644
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002441 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (921)
Q Consensus 112 -~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (921)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+.+++.+++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888777654 1222221 22334444444444555555555555554
Q ss_pred h
Q 002441 186 I 186 (921)
Q Consensus 186 ~ 186 (921)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
No 482
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.95 E-value=1.2 Score=41.23 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (921)
Q Consensus 48 ~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 127 (921)
...++.........++.+++..++..+--+.|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566677777779999999999999888899999999999999999999999999999988888888888888888888
Q ss_pred HcCCHH
Q 002441 128 DEGRLV 133 (921)
Q Consensus 128 ~~g~~~ 133 (921)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888743
No 483
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.78 E-value=20 Score=40.20 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChHHHH
Q 002441 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (921)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (921)
.+...|-+...+..+-.++....++.-....+.+++....+ ..+++.++.+|... ..++-...+++..+.+-++...-
T Consensus 58 ~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ 135 (711)
T COG1747 58 SLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG 135 (711)
T ss_pred HhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH
Q ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002441 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (921)
Q Consensus 263 ~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (921)
..++..|... +.+++..+|.+++ .-.....+...-.+.+++..+.-+++.+..+.+-.
T Consensus 136 ReLa~~yEki--------k~sk~a~~f~Ka~--------------yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ 193 (711)
T COG1747 136 RELADKYEKI--------KKSKAAEFFGKAL--------------YRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQK 193 (711)
T ss_pred HHHHHHHHHh--------chhhHHHHHHHHH--------------HHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------
Q 002441 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD-------- 414 (921)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-------- 414 (921)
-.....-...+.-.++...+. |....++++|++.+...++.+..+..+.-++...+..
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~--------------Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~ 259 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKK--------------YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQL 259 (711)
T ss_pred HHHHhhccchHHHHHHHHHHH--------------hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhH
Q ss_pred ------------cCCHHHHHHHHHHHhhcCCCC
Q 002441 415 ------------AGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 415 ------------~g~~~~A~~~~~~al~l~P~~ 435 (921)
-.++.+++.-|++.+..+..+
T Consensus 260 e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 260 EEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHhcchhhccccHHHHHHHHHHHheeccCc
No 484
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=92.78 E-value=0.28 Score=51.23 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred HHHHHHHhCCccEEEecCCCCCCCchhhhh-cCCCceEEeeccCCCCCCCCCccEEEecCCCCCCCcccC--cccceEEc
Q 002441 557 KVAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK--HVEELIRL 633 (921)
Q Consensus 557 ~~a~~i~~d~idiLvdl~g~t~~~r~~~~a-~r~APvQ~~~~G~p~ttG~~~~Dy~i~d~~~~p~~~~~~--~~e~~~~l 633 (921)
.+++.||.-+.|++||+.+.. |..+++ .-.||.-+.+-+... .+.-..+..+.... .+...+.+ ..+.++-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997753 333333 356787777654443 11122222222211 11111111 11122222
Q ss_pred CCCcc--ccCCCCC-CCCCCCCC-CCCCCCeEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 002441 634 PECFL--CYTPSPE-AGPVCPTP-ALTNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 707 (921)
Q Consensus 634 p~~~~--~~~~~~~-~~~~~~~~-~~~~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 707 (921)
|.... .+.++.. ........ ......|.|.-+.+. .|. ..+.+..+.+-+.... ..++|.|++. ......
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~---~~~~~~ 153 (247)
T PF01075_consen 78 PYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPE---EQEKEI 153 (247)
T ss_dssp -SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSH---HHHHHH
T ss_pred CCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccch---HHHHHH
Confidence 21100 0000000 00000111 123344545444433 333 3344444444443333 4566666551 111222
Q ss_pred HHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002441 708 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 708 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
...+ ..++....+.+.+... -.+..+.+..||+++ -+-+-.+==|.++|+|+|++-|.+...|.+
T Consensus 154 ~~~~-~~~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 154 ADQI-AAGLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHH-HTTHTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHH-HHhcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 2222 2233323577777654 689999999999997 222223444677999999999998776655
No 485
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.78 E-value=0.53 Score=51.99 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=90.7
Q ss_pred CcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002441 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTH 121 (921)
Q Consensus 45 ~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~ 121 (921)
+...+..+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 445666666677777777889999999999999999999999999988765 46677888889999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002441 122 CGILYKDEGRLVEAAESYHKALSADPSY 149 (921)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (921)
|+.++...+++.+|+.+...+....|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999998888878754
No 486
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.74 E-value=6.3 Score=44.95 Aligned_cols=216 Identities=14% Similarity=0.116 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCChH
Q 002441 194 YYNLGVVYSELMQYDTALGCYEKAAL--------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (921)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (921)
|..||.-....=+++-|.+.|.++-. .....+. -..++.++...|++.+|.+.|.+.=..+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enR--- 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENR--- 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhh---
Confidence 55566666666667777777766522 1111122 24567788888899999888876421111
Q ss_pred HHHHHH-HHHHHhhhhhhhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHH----------HHH
Q 002441 260 IAKNNM-AIALTDLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFY----------ELA 326 (921)
Q Consensus 260 ~~~~~l-a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~----------~~a 326 (921)
+.... -.-.+..++-+...|.-++-..+.++-.+. +-+.+. ..|.++...|+.++|+... +-+
T Consensus 664 -AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 664 -ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 00000 001122333333344444444444332221 112222 2355666777777776543 222
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002441 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (921)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 406 (921)
-+++....+.+..++..+.+...+.-|.+.|++.-.. -.+-.++.+.+++.+|....++--+.- ..+|+
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 2334444555666666666666666666666654221 223445566777777776655433332 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 002441 407 NLGVLYRDAGSISLAIDAYEQC 428 (921)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~a 428 (921)
-.|+-+.+..+++||.+.|.+|
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHh
Confidence 6666666666777776666655
No 487
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=92.67 E-value=0.93 Score=52.46 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=77.6
Q ss_pred CcCCHHHHHHHH-HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCC
Q 002441 669 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 747 (921)
Q Consensus 669 ~K~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~ 747 (921)
.++-|.++++-. +.++ ++.++++- ...+..++.+.+.++..++- .+.+... ... ...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp---~a~~~~~~~i~~~~~~~~~~--~~~ii~~---~~~-~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVS---SANPKYDHLILEVLQQEGCL--HSHIVPS---QFR-YELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEe---cCchhhHHHHHHHHhhcCCC--CeEEecC---cch-HHHHHhcCeee---
Confidence 344566666654 1222 24555442 22223345555555443321 1222221 111 24556699999
Q ss_pred CCCCcccHHHHhhcCCcEEe-cCCCcccccchhHHHh----hcC----------Ccccc----cCCHHHHHHHHHHHhcC
Q 002441 748 PYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLT----KVG----------LKHLI----AKNEDEYVQLALQLASD 808 (921)
Q Consensus 748 ~~~g~~t~~eal~~GvPvvt-~~g~~~~~r~~~~~l~----~~g----------l~~~i----a~~~~~y~~~a~~l~~d 808 (921)
-..||.|+|++.+|+|.|. ..-..+.-.++--+++ .+| .||++ .-+++.-.+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 6789999999999999554 3332221112212222 123 36788 3456666654 799999
Q ss_pred HHHHHHHHHHHHHHhh
Q 002441 809 VTALANLRMSLRDLMS 824 (921)
Q Consensus 809 ~~~~~~~r~~~~~~~~ 824 (921)
++.++++++.+++...
T Consensus 572 ~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 572 SQSKEKQKDACRDLYQ 587 (608)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988999888877543
No 488
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.55 E-value=1.5 Score=42.91 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 002441 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (921)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (921)
..++..+|..|.+.|++++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356777888888888888888888887665433 24567777778888888888888877776553
No 489
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.54 E-value=15 Score=38.42 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHh
Q 002441 221 RPMYAEAYCNMGVI-YKNRGDLESAIACYERCLAV 254 (921)
Q Consensus 221 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 254 (921)
.|...+.+...+.+ |...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455555555443 67778999888877766655
No 490
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.44 E-value=0.22 Score=32.16 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 002441 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (921)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (921)
+..+|.++...+++++|+..|+++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=15 Score=41.84 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=109.7
Q ss_pred HhCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCh------
Q 002441 94 MQNMGRLAFDSFSEAVKL------------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYK------ 150 (921)
Q Consensus 94 ~~g~~~~A~~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~------ 150 (921)
....|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++-. .|...
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345678888888877765 4556788999999999999999888887777531 12110
Q ss_pred ------HhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----
Q 002441 151 ------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY-SELMQYDTALGCYEKA----- 217 (921)
Q Consensus 151 ------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a----- 217 (921)
......-.+++..-..+.+.|-+..|.++.+-+++++|. ++.+...+..+| .+..+|+=-++.++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 011112223444455667889999999999999999998 776655555544 4556676666666655
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Q 002441 218 ALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPN 257 (921)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 257 (921)
+..-|+.. .-..++..|..... -+.|...+.+|+...|.
T Consensus 410 l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 23344432 23456666666655 57788899999988885
No 492
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.89 E-value=17 Score=38.29 Aligned_cols=181 Identities=13% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--------
Q 002441 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-------- 115 (921)
Q Consensus 44 ~~~~~~~~l~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 115 (921)
.....+.-...-+...+..+..+-++....+++.+|+.+.++..++.- ...-..+|.+.|+++++.....
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~q 257 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQ 257 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHHHHHcCChHHHHH
Q 002441 116 -----------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (921)
Q Consensus 116 -----------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~ 178 (921)
..+-..++.|..++|+..+|++.++...+..| ...+-.+..++-..+....-|.....
T Consensus 258 h~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p-----l~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 258 HQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP-----LLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred hhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002441 179 KYYEALKI-DPHYAPAYYNLGVVYSE----------------LMQYDTALGCYEKAALERPMYAEAYCNM 231 (921)
Q Consensus 179 ~~~~al~~-~p~~~~~~~~la~~~~~----------------~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (921)
.+-+.-++ -|..+...+.-+.+-.+ ..--..|++...++++.+|.-+..+..+
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
No 493
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.84 E-value=2.1 Score=39.78 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=54.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002441 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (921)
Q Consensus 341 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (921)
...-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3333446677777777776666777777777777777777777777777777777666666666666777777777643
No 494
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=91.70 E-value=3.3 Score=45.72 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=62.7
Q ss_pred CCeEEEecCC--CCcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCC-EEEccCcCCcHH
Q 002441 658 GFITFGSFNN--LAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 732 (921)
Q Consensus 658 ~~~~f~~~~~--~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~r-v~~~~~~~~~~~ 732 (921)
..|+|....+ ..|. .++-+...++-|.. .+.++++.|++ ..++...+..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 4566666553 3454 34444444443332 46677777654 2232222222222211 123 45566554 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
..+.+..||+++ -|-+-.+==|-++|+|||++-|.+...+.+
T Consensus 255 l~ali~~a~l~I----~nDTGp~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEE----ecCChHHHHHHHhCCCEEEEECCCCccccC
Confidence 999999999987 222223445788999999999987665553
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=9.6 Score=43.22 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=104.8
Q ss_pred hCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------
Q 002441 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------------- 111 (921)
Q Consensus 60 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 111 (921)
....|++|...|.-+... .|.+.+.++.++.+...+|+.+.|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888877776653 5667889999999999999999888888777632
Q ss_pred -----CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002441 112 -----DPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (921)
Q Consensus 112 -----~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (921)
.|.|-.. ++..-..+.+.|-+..|.++++-+++++|. ++-....+...|...+.-|.-.-++.++.+..++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2223222 233334556789999999999999999998 6665444444444444333333333333322222
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 002441 183 ALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAALERPM 223 (921)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 223 (921)
+..-|+.+ .-..+|..|..... -+.|...+.+|+...|.
T Consensus 410 -l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 -LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22344433 22345666666655 56788899999988875
No 496
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=91.57 E-value=3.1 Score=45.82 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCeEEEecCC-CCcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCC-EEEccCcCCcHH
Q 002441 657 NGFITFGSFNN-LAKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHD 732 (921)
Q Consensus 657 ~~~~~f~~~~~-~~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~r-v~~~~~~~~~~~ 732 (921)
...|+++...+ ..|.=| .+-|+++.+.. .+..++|.|++.. ..++ +.+.+.+ +....+ +.+.|... -.+
T Consensus 181 ~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~~~~~ivl~g~p~~--~e~~-~~~~i~~-~~~~~~~~~l~g~~s-L~e 253 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWD--NDRFSALIDALHARGYEVVLTSGPDK--DELA-MVNEIAQ-GCQTPRVTSLAGKLT-LPQ 253 (344)
T ss_pred CCEEEEeCCCCccccCCC--HHHHHHHHHHHHhCCCeEEEecCCCH--HHHH-HHHHHHh-hCCCCcccccCCCCC-HHH
Confidence 34566665543 233322 33444444333 3567777765421 1111 1122222 222334 34666654 588
Q ss_pred HHHhcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccch
Q 002441 733 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 778 (921)
Q Consensus 733 ~~~~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 778 (921)
..+.+..||+++- +-+-.+==|-++|+|+|++-|.+...+.+
T Consensus 254 l~ali~~a~l~Vs----~DSGp~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 254 LAALIDHARLFIG----VDSVPMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHHhCCEEEe----cCCHHHHHHHHcCCCEEEEECCCCccccc
Confidence 9999999999982 22223444778999999999987665554
No 497
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=91.47 E-value=1.3 Score=47.96 Aligned_cols=140 Identities=18% Similarity=0.243 Sum_probs=78.3
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHHhcccccEEecCCC
Q 002441 669 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 748 (921)
Q Consensus 669 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~D~~Ld~~~ 748 (921)
-++-|-++++..++..+.|+.++++-..+ ..-++++..+.......-.+++.. .+-...+..||++|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 45667888888888889999999996443 232334433333222111223222 22334555699998
Q ss_pred CCCcccHHHHhhcCCcEE-ecCCCcccccchhHH--HhhcCCcccccC------------CHHHHHHHHHHHhcCHHHHH
Q 002441 749 YAGTTTTCESLYMGVPCV-TMAGSVHAHNVGVSL--LTKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 813 (921)
Q Consensus 749 ~~g~~t~~eal~~GvPvv-t~~g~~~~~r~~~~~--l~~~gl~~~ia~------------~~~~y~~~a~~l~~d~~~~~ 813 (921)
-..||.|+|++-+|+|.| +..-..+-..++--+ +..++||.+|+. +++.-.+....|..|...+.
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 567999999999999954 433222211111111 112455555543 34555555566666665555
Q ss_pred HHHHHHHH
Q 002441 814 NLRMSLRD 821 (921)
Q Consensus 814 ~~r~~~~~ 821 (921)
++.+..++
T Consensus 350 ~~~~~~~~ 357 (381)
T COG0763 350 ALKEKFRE 357 (381)
T ss_pred HHHHHHHH
Confidence 55544433
No 498
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.45 E-value=1.8 Score=47.58 Aligned_cols=107 Identities=15% Similarity=0.033 Sum_probs=60.1
Q ss_pred CeEEEecCC--CCcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCCEEEccCcCCcHHHHH
Q 002441 659 FITFGSFNN--LAKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 735 (921)
Q Consensus 659 ~~~f~~~~~--~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 735 (921)
.|+|.-+.+ ..|.= .+-+.-..+.+.. .+..+++.|++. .++...+ +.+. .....+.+.|... -.+..+
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~----e~~~~~~-i~~~-~~~~~~~l~g~~s-L~el~a 247 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAK----DHPAGNE-IEAL-LPGELRNLAGETS-LDEAVD 247 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChh----hHHHHHH-HHHh-CCcccccCCCCCC-HHHHHH
Confidence 455544442 34443 3344444444433 356777777652 2222222 2221 2222344666554 578999
Q ss_pred hcccccEEecCCCCCCcccHHHHhhcCCcEEecCCCcccccc
Q 002441 736 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 777 (921)
Q Consensus 736 ~~~~~D~~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 777 (921)
.+..||+++ -+-+-.+==|-++|+|+|++-|.+...+.
T Consensus 248 li~~a~l~I----~~DSGp~HlAaA~~~P~i~lfG~t~p~~~ 285 (334)
T TIGR02195 248 LIALAKAVV----TNDSGLMHVAAALNRPLVALYGSTSPDFT 285 (334)
T ss_pred HHHhCCEEE----eeCCHHHHHHHHcCCCEEEEECCCChhhc
Confidence 999999997 22222234477899999999998876654
No 499
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=13 Score=40.61 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 002441 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGE------------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 348 (921)
Q Consensus 282 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 348 (921)
-+++++.-.+.+..+|+...+|+..-.++.. ..-.++-+.+...+++.+|+...+|+....++.+.+
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 4566666677777777766555443322221 113445556666666777777777777777766554
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002441 349 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (921)
Q Consensus 349 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 413 (921)
++..-++..+++++.+|.+..+|...=.+..... ...+=+++..+++..++.+..+|.....++.
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 3566667777777777766666555444433322 2345566666666666666666666655554
No 500
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.23 E-value=0.34 Score=47.92 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=46.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 002441 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (921)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (921)
.....++.+.|.+.|.+++.+-|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456677777888888888888888888888888888888888888888888888777643
Done!