BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002442
(921 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 272 bits (695), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 185/587 (31%), Positives = 290/587 (49%), Gaps = 56/587 (9%)
Query: 272 LYGSIPFMIS-HGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSE 330
LYG+ F + SG + G F +N+ M++ +L P+ T
Sbjct: 213 LYGAQTFFLCLEDASGLSFGVFLMNSNAMEV------------VLQPAPAITYRTI---- 256
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
GI+D + F+G P+ VV++Y + G P++P +++ +H R+ Y +++ +V +
Sbjct: 257 GGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRA 316
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDS-- 448
+PYDV DI++ D ++ FT+D + F E +L G+ +V IVDP I + S
Sbjct: 317 AQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSSS 376
Query: 449 --YWLHNEATEKGYYVKDATK-RDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGS 505
Y ++ ++ +V + G WPG + + D NP WW +F E +
Sbjct: 377 KPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEF--ELFHNQ 434
Query: 506 TPSLYIWNDMNEPSVF-------------NGPEVTMPR--------DALHLDRVEH---- 540
IW DMNE S F N P T PR L +D V+H
Sbjct: 435 VEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFT-PRILDGYLFCKTLCMDAVQHWGKQ 493
Query: 541 RELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRV 600
++HN YGY +AT++ K R F+L R+ FAGS ++ A W GDNTA W+ LR
Sbjct: 494 YDIHNLYGYSMAVATAEAA-KTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRW 552
Query: 601 SVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWL 660
S+P +L L G+ G D+ GF + EL RW QLGA+YPF R H K ++P
Sbjct: 553 SIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPAS 612
Query: 661 FGERNTQL--IREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAF 718
FG + L R +++RY LPY YTLF A++ G V RPL EF D ST+ + F
Sbjct: 613 FGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYEDNSTWDVHQQF 672
Query: 719 MVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGVTH-KLEVSEESVPAFQRP 777
+ G LL+ V +E A+ + Y+P WYD TG++V+ ++E+ + + R
Sbjct: 673 LWGPGLLITPVLDEGAEKVMAYVP-DAVWYDYETGSQVRWRKQKVEMELPGDKIGLHLRG 731
Query: 778 GTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFD 824
G I P + ++ +P L++AL+ ++ A+G+L+ DDG++ D
Sbjct: 732 GYIFPTQQP-NTTTLASRKNPLGLIIALDENKEAKGELFWDDGETKD 777
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 272 bits (695), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 185/587 (31%), Positives = 290/587 (49%), Gaps = 56/587 (9%)
Query: 272 LYGSIPFMIS-HGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSE 330
LYG+ F + SG + G F +N+ M++ +L P+ T
Sbjct: 213 LYGAQTFFLCLEDASGLSFGVFLMNSNAMEV------------VLQPAPAITYRTI---- 256
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
GI+D + F+G P+ VV++Y + G P++P +++ +H R+ Y +++ +V +
Sbjct: 257 GGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRA 316
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDS-- 448
+PYDV DI++ D ++ FT+D + F E +L G+ +V IVDP I + S
Sbjct: 317 AQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSSS 376
Query: 449 --YWLHNEATEKGYYVKDATK-RDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGS 505
Y ++ ++ +V + G WPG + + D NP WW +F E +
Sbjct: 377 KPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEF--ELFHNQ 434
Query: 506 TPSLYIWNDMNEPSVF-------------NGPEVTMPR--------DALHLDRVEH---- 540
IW DMNE S F N P T PR L +D V+H
Sbjct: 435 VEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFT-PRILDGYLFCKTLCMDAVQHWGKQ 493
Query: 541 RELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRV 600
++HN YGY +AT++ K R F+L R+ FAGS ++ A W GDNTA W+ LR
Sbjct: 494 YDIHNLYGYSMAVATAEAA-KTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRW 552
Query: 601 SVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWL 660
S+P +L L G+ G D+ GF + EL RW QLGA+YPF R H K ++P
Sbjct: 553 SIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPAS 612
Query: 661 FGERNTQL--IREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAF 718
FG + L R +++RY LPY YTLF A++ G V RPL EF D ST+ + F
Sbjct: 613 FGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYEDNSTWDVHQQF 672
Query: 719 MVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGVTH-KLEVSEESVPAFQRP 777
+ G LL+ V +E A+ + Y+P WYD TG++V+ ++E+ + + R
Sbjct: 673 LWGPGLLITPVLDEGAEKVMAYVP-DAVWYDYETGSQVRWRKQKVEMELPGDKIGLHLRG 731
Query: 778 GTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFD 824
G I P + ++ +P L++AL+ ++ A+G+L+ DDG++ D
Sbjct: 732 GYIFPTQQP-NTTTLASRKNPLGLIIALDENKEAKGELFWDDGETKD 777
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 175/587 (29%), Positives = 290/587 (49%), Gaps = 67/587 (11%)
Query: 225 SDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYL-HDSPFGLYGSIPFMISHG 283
+++ G+ E+A K R Y ++N+D Y + P LY SIP IS
Sbjct: 61 KEHIIGLGEKAFELDRKRKR---------YVMYNVDAGAYKKYQDP--LYVSIPLFISV- 108
Query: 284 KSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPG 343
K G +G+F+ +A+++ DV G +++ + ++ F++ E GP
Sbjct: 109 KDGVATGYFFNSASKVIFDV---GLEEYDKVIVTIPEDSVE-FYVIE----------GPR 154
Query: 344 PKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIE 403
+DV+ +YT +TG P +PP+++ Y R++Y ++ V ++ + ++LDI
Sbjct: 155 IEDVLEKYTELTGKPFLPPMWAFGYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIH 214
Query: 404 HTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYWLHNEATEKGYYVK 463
+ D K FTW FP P+++ +L + ++TIVD I+ D +Y + G + +
Sbjct: 215 YMDSYKLFTWHPYRFPEPKKLIDELHKRNVKLITIVDHGIRVDQNY--SPFLSGMGKFCE 272
Query: 464 DATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFN- 522
+ + G WPG++ Y D + R WW S G IW DMNEP+ F+
Sbjct: 273 IESGELFVGKMWPGTTVYPDFFREDTREWWAGLISEWLSQGVDG---IWLDMNEPTDFSR 329
Query: 523 GPEV------------------TMPRDALHL---DRVEHRELHNAYGYYFHMATSDGLLK 561
E+ T P + +H RV+H ++ NAY Y MAT G
Sbjct: 330 AIEIRDVLSSLPVQFRDDRLVTTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGF-- 387
Query: 562 RENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVG 621
R + ++ F+L+RA +AG QRY +WTGDNT W+ L++ + ++L L ++G+ F G D+G
Sbjct: 388 RTSHRNEIFILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIG 447
Query: 622 GFFG------NPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHV 675
GF G + +LLV++Y L ++PF+R+H D EP + + ++E + +
Sbjct: 448 GFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDGIDTEPVFLPDYYKEKVKEIVEL 507
Query: 676 RYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAK 735
RY FLPY Y+L EA+ G PV+RPL+ EF D+ + ++ +MVG LL + +
Sbjct: 508 RYKFLPYIYSLALEASEKGHPVIRPLFYEFQDDDDMYRIEDEYMVGKYLLYAPIVSKEES 567
Query: 736 HISVYLPGKESWYDIRTGARVKGGVTHKLEVSEESVPAFQRPGTIIP 782
+ GK WY+ G + G K S +P + R G+IIP
Sbjct: 568 RLVTLPRGK--WYNYWNGEIINGKSVVK---STHELPIYLREGSIIP 609
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 259 bits (663), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 199/657 (30%), Positives = 317/657 (48%), Gaps = 66/657 (10%)
Query: 225 SDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYG-SIPFMISHG 283
SDY+YGI E+ R + + + +F D + D+ LYG FM
Sbjct: 202 SDYIYGIGEQVHK------RFRHDLSWKTWPIFTRD--QLPGDNNNNLYGHQTFFMCIED 253
Query: 284 KSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPG 343
SG++ G F +N+ M+I + + I T+ ++ GI+D + +G
Sbjct: 254 TSGKSFGVFLMNSNAMEIFI---------------QPTPIVTYRVT-GGILDFYILLGDT 297
Query: 344 PKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIE 403
P+ VV+QY + G+P+MP +++ + RWNY+ + V++V + E IP+D DI+
Sbjct: 298 PEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDID 357
Query: 404 HTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIK-----RDDSYWLHNEATEK 458
+ + KK FT+D+++F + + L G+ V I+DP I +Y + +
Sbjct: 358 YMEDKKDFTYDQVAFNGLPQFVQDLHDHGQKYVIILDPAISIGRRANGTTYATYERGNTQ 417
Query: 459 GYYVKDAT-KRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNE 517
++ ++ G WPG + Y D NP WW + S + L W DMNE
Sbjct: 418 HVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANECSIFHQEVQYDGL--WIDMNE 475
Query: 518 PSVF-------------NGPEVT-------MPRDALHLDRVEH----RELHNAYGYYFHM 553
S F N P T M + +D V++ ++H+ YGY +
Sbjct: 476 VSSFIQGSTKGCNVNKLNYPPFTPDILDKLMYSKTICMDAVQNWGKQYDVHSLYGYSMAI 535
Query: 554 ATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGM 613
AT + K K R F+L R+ FAGS R+ A W GDNTA WEQ+ S+ +L L G+
Sbjct: 536 ATEQAVQKVFPNK-RSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEFSLFGI 594
Query: 614 SFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLI---R 670
GAD+ GF EL RW QLGA+YPF R H + ++P FG+ N+ L+ R
Sbjct: 595 PLVGADICGFVAETTEELCRRWMQLGAFYPFSRNHNSDGYEHQDPAFFGQ-NSLLVKSSR 653
Query: 671 EAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVY 730
+ + +RY LP+ YTLF +A+ G V RP+ EF D +++ D F+ G ALL+ V
Sbjct: 654 QYLTIRYTLLPFLYTLFYKAHVFGETVARPVLHEFYEDTNSWIEDTEFLWGPALLITPVL 713
Query: 731 EERAKHISVYLPGKESWYDIRTGARVKGGVTH-KLEVSEESVPAFQRPGTIIPRRDRFRR 789
++ A +S Y+P WYD +GA+ + + + + R G IIP ++
Sbjct: 714 KQGADTVSAYIP-DAIWYDYESGAKRPWRKQRVDMYLPADKIGLHLRGGYIIPIQEP-DV 771
Query: 790 SSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDFLE-GAFIHRRFVFSNGQLKSI 845
++T +P L+VAL + A+G + DDG++ D ++ G +I F SN L +
Sbjct: 772 TTTASRKNPLGLIVALGENNTAKGDFFWDDGETKDTIQNGNYILYTFSVSNNTLDIV 828
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 256 bits (653), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 163/597 (27%), Positives = 279/597 (46%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R+DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RMDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q RW Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D++++DI++ K FT + +FP E +++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + DMLNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WNDMNEP++F E V P D
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R + +R+ + G RYG +W GDN
Sbjct: 367 VNGKKIRHDKVHNLFGYNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ M+ +L + G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ M+GN +++ VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T + L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENMQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 162/597 (27%), Positives = 278/597 (46%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R+DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RMDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q RW Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D++++DI++ K FT + +FP E +++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + DMLNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WNDMNEP++F E V P D
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R + +R+ + G RYG +W G N
Sbjct: 367 VNGKKIRHDKVHNLFGYNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGANK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ M+ +L + G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ M+GN +++ VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T + L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENMQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 162/597 (27%), Positives = 278/597 (46%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R+DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RMDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q RW Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D++++DI++ K FT + +FP E +++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + DMLNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WN MNEP++F E V P D
Sbjct: 307 FWNAMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R + +R+ + G RYG +W GDN
Sbjct: 367 VNGKKIRHDKVHNLFGYNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ M+ +L + G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ M+GN +++ VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T + L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENMQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 162/597 (27%), Positives = 279/597 (46%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R+DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RMDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q R+ Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D++++DI++ K FT + +FP E +++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + DMLNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WNDMNEP++F E V P D
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R + +R+ + G RYG +W GDN
Sbjct: 367 VNGKKIRHDKVHNLFGYNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ M+ +L + G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ M+GN +++ VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T + L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENMQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 162/597 (27%), Positives = 279/597 (46%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R+DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RMDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q R+ Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D++++DI++ K FT + +FP E +++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + DMLNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WNDMNEP++F E V P D
Sbjct: 307 FWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R + +R+ + G RYG +W GDN
Sbjct: 367 VNGKKIRHDKVHNLFGYNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ M+ +L + G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ M+GN +++ VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T + L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENMQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/636 (28%), Positives = 287/636 (45%), Gaps = 86/636 (13%)
Query: 273 YGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAG 332
YG P+ + + G G LN+ M + LP+ R + G
Sbjct: 216 YGVHPYYMGLEEDGSAHGVLLLNSNAMDVTFQP----------LPALTYR------TTGG 259
Query: 333 IVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHD 392
++D + F+GP P+ V +QYT + G P M P +S+ + CR+ Y+++ ++ + +
Sbjct: 260 VLDFYVFLGPTPELVTQQYTELIGRPVMVPYWSLGFQLCRYGYQNDSEIASLYDEMVAAQ 319
Query: 393 IPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDS--YW 450
IPYDV + DI++ + + FT P + R + G ++ I+DP I +++ Y
Sbjct: 320 IPYDVQYSDIDYMERQLDFTLSPKFAGFPALINR-MKADGMRVILILDPAISGNETQPYP 378
Query: 451 LHNEATEKGYYVKDATKRDYD-GWCWP--------GS-------------SSYLDMLNPE 488
E ++K D G WP GS ++ D
Sbjct: 379 AFTRGVEDDVFIKYPNDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNS 438
Query: 489 IRTWWGTKFS--YENYVGSTPSLY---IWNDMNEPSVF-NGPEVTMPRDAL--------H 534
WW + Y N SL +W DMNEPS F NG RDA H
Sbjct: 439 TAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPH 498
Query: 535 LDR-----------------------VEHRELHNAYGYYFHMATSDGLLKRENGKDRPFV 571
L+ V+H +HN YG+ T + + +E R V
Sbjct: 499 LESRDRGLSSKTLCMESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAV--QEVTGQRGVV 556
Query: 572 LARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTEL 631
+ R+ F S R+ W GDNTA W+QL+ S+ ++ L G+S++GAD+ GFF + + E+
Sbjct: 557 ITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEM 616
Query: 632 LVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREAN 691
VRW QLGA+YPF R H T+R++P + + R + RY LPY YTL +A+
Sbjct: 617 CVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFVNISRTVLQTRYTLLPYLYTLMHKAH 676
Query: 692 TTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIR 751
T G+ VVRPL EF SD+ T+ D F++G A LV V E A++++ Y P + WYD
Sbjct: 677 TEGVTVVRPLLHEFVSDQVTWDIDSQFLLGPAFLVSPVLERNARNVTAYFP-RARWYDYY 735
Query: 752 TGARVKG-GVTHKLEVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYT-LVVALNSSQ 809
TG + G L + + R G I+P ++ +T + + +AL+
Sbjct: 736 TGVDINARGEWKTLPAPLDHINLHVRGGYILPWQE--PALNTHLSRQKFMGFKIALDDEG 793
Query: 810 AAEGQLYVDDGKSFD-FLEGAFIHRRFVFSNGQLKS 844
A G L+ DDG+S D + +G + F S ++S
Sbjct: 794 TAGGWLFWDDGQSIDTYGKGLYYLASFSASQNTMQS 829
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 159/597 (26%), Positives = 267/597 (44%), Gaps = 71/597 (11%)
Query: 272 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-E 330
LYG+ F+I GK+ T G F+ +++ D+ G+ R DT +S E
Sbjct: 87 LYGAHNFIIVSGKT--TFGLFFDYPSKLTFDI---GYT------------RXDTLKVSCE 129
Query: 331 AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDE 390
+D + G D+V+Q+ V G +PP F+ + Q RW Y +ED V + E
Sbjct: 130 NADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRE 189
Query: 391 HDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYW 450
+ IP D ++ DI++ K FT + +FP E ++ + ++ I+D +K + Y
Sbjct: 190 NHIPIDXIYXDIDYXQDFKDFTVNEKNFPDFPEFVKEXKDQELRLIPIIDAGVKVEKGYE 249
Query: 451 LHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLY 510
++ E + Y+ K D+ WPG + + D LNPE R W+G K+ + G
Sbjct: 250 VYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDXLNPEARKWFGDKYRFLIDQGIEG--- 306
Query: 511 IWNDMNEPSVFNGPE--------------------------------VTMPRD------A 532
WND NEP++F E V P D
Sbjct: 307 FWNDXNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPEDYKRFYHN 366
Query: 533 LHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT 592
++ ++ H ++HN +GY A + +R + + R +R+ + G RYG +W GDN
Sbjct: 367 VNGKKIRHDKVHNLFGYNXTRAAGEAF-ERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNK 425
Query: 593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHD 652
+ W + +++ + +L G ++GAD+GGF + +LL+R+ LG + P R HA
Sbjct: 426 SWWSHILLNLKXLPSLNXCGFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLXRDHAAEG 485
Query: 653 TKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTF 712
T+ +E + F N + R I+ RY +PY Y+ + +A +PL +P D+
Sbjct: 486 TREQECYQF--ENIEDFRSVINARYRLVPYLYSEYXKAALNDDXYFKPLGFVYPDDKXAI 543
Query: 713 TNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGV----THKLEVSE 768
++ +GN + + VYE+ A+ VYLP + + + V H ++V+
Sbjct: 544 RVEDQLXLGNEIXIAPVYEQNARGRYVYLPEEXKFIKFXPDGSISEEVLEKGVHYVDVAL 603
Query: 769 ESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGKSFDF 825
VP F R G IP + + + V D T L + + LY DDG D+
Sbjct: 604 NEVPLFIRSGKCIPVAE-----AAECVKDIDTENXQLIGYEGSSYTLYEDDGIHKDY 655
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/522 (25%), Positives = 224/522 (42%), Gaps = 25/522 (4%)
Query: 309 NAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAY 368
N+ SG + K + +++G G ++ +T VTG +PP +++
Sbjct: 207 NSASGAMDIGKTESDILQLEAKSGRSAYILVAGNSYPSLIENFTQVTGRQPLPPRWALGS 266
Query: 369 HQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIE--HTDGKKY---FTWDRLSFPHPEE 423
R+ YR E + K+ D P D + LD+ D K + WD+ +FP P +
Sbjct: 267 FASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWDKENFPTPLD 326
Query: 424 MQRKLATKGRHMVTIVDPHIKRDDSYWLHNEATEKGYYVKDATKRDYDGWCWPGSSSYLD 483
M +G V I +P + W ++A + KD + + G+ +D
Sbjct: 327 MMADFKQQGVKTVLITEPFVLTSSKRW--DDAVKAKALAKDPQGQPKAFELYFGNGGIID 384
Query: 484 MLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGPEVTMPRDALHLDRVEHREL 543
+ + E W+ + + + G W D+ EP + P D H + +
Sbjct: 385 VFSKEGSRWFSSIYKDLSKQGVAG---WWGDLGEPEMH-------PEDTQHAIG-DADTV 433
Query: 544 HNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAV-WTGDNTAEWEQLRVSV 602
HNAYG+ + L + + RPF++ RA F GSQRYG + WTGD + W L V
Sbjct: 434 HNAYGHRWAEMLYQQQLD-QFPELRPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQV 492
Query: 603 PMILTLGLTGMSFSGADVGGFFGNP--DTELLVRWYQLGAYYPFFRAHAHHDTKRREPWL 660
+ L + L G + +D+GGF D E+ +RW Q G + P +R H D EP
Sbjct: 493 ELALQMSLLGFGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHGQ-DHIPSEPVF 551
Query: 661 FGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMV 720
E ++R + +RY LPY YT + TG+P++RPL+ + + N ++
Sbjct: 552 QDEETKAILRPLVKLRYRMLPYIYTAAYQNTLTGMPLMRPLFFSDEKNPALIDNKTSYFW 611
Query: 721 GNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVK-GGVTHKLEVSEESVPAFQRPGT 779
G++LLV + + + +S+ P K W+D R + G L ++P + G
Sbjct: 612 GDSLLVTPITQAGVESVSIPAP-KGVWFDFWKDTRYQTDGAPLTLPTDLHTIPVLVKAGA 670
Query: 780 IIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQLYVDDGK 821
+P + + A S A+G+++ DDGK
Sbjct: 671 FMPYVPAVSTTEDYRSDSLEIHYYADASVPLAQGEIFEDDGK 712
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/459 (27%), Positives = 207/459 (45%), Gaps = 29/459 (6%)
Query: 330 EAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAY---HQCRWNYRDEEDVEQVDS 386
E+ ++ F GP PK V+ +YT TG P++PP +S NY DE V
Sbjct: 233 ESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNY-DEATVNSFID 291
Query: 387 KFDEHDIPYDVLWLDIEHTDGKKY--FTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIK 444
E ++P V D ++ F WD L+FP PE M R+L KG + ++P+I
Sbjct: 292 GMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIG 351
Query: 445 RDDSYWLHNEATEKGYYVK--DATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENY 502
+ + E EKGY +K D + +D W PG + Y D NP+ W+ K +
Sbjct: 352 QKSP--VFKELQEKGYLLKRPDGSLWQWDKWQ-PGLAIY-DFTNPDACKWYADKL--KGL 405
Query: 503 VGSTPSLYIWNDMNEPSVFNGPEVTMPRDALHLDRVEHRELHNAYGYYFHMATSDGLLKR 562
V + D E +P D D + +++HN Y Y ++ + +LK
Sbjct: 406 VAMGVDCFK-TDFGE---------RIPTDVQWFDGSDPQKMHNHYAYIYNELVWN-VLKD 454
Query: 563 ENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGG 622
G++ + AR+ G+Q++ W GD A +E + S+ L++GL+G F D+GG
Sbjct: 455 TVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGG 514
Query: 623 FFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPY 682
F + RW G R H R PW + + + ++R ++ +PY
Sbjct: 515 FENTAPAHVYKRWCAFGLLSSHSRLHG--SKSYRVPWAYDDESCDVVRFFTQLKCRMMPY 572
Query: 683 FYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLP 742
Y AN G P++R + MEFP D + D +M+G+ ++V V+ E A + YLP
Sbjct: 573 LYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTE-AGDVQFYLP 631
Query: 743 GKESWYDIRTGARVKGGVTHKLEVSEESVPAFQRPGTII 781
+ W + + G HK + S+P + R T++
Sbjct: 632 -EGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLL 669
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/459 (27%), Positives = 207/459 (45%), Gaps = 29/459 (6%)
Query: 330 EAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAY---HQCRWNYRDEEDVEQVDS 386
E+ ++ F GP PK V+ +YT TG P++PP +S NY DE V
Sbjct: 233 ESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNY-DEATVNSFID 291
Query: 387 KFDEHDIPYDVLWLDIEHTDGKKY--FTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIK 444
E ++P V D ++ F WD L+FP PE M R+L KG + ++P+I
Sbjct: 292 GMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIG 351
Query: 445 RDDSYWLHNEATEKGYYVK--DATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENY 502
+ + E EKGY +K D + +D W PG + Y D NP+ W+ K +
Sbjct: 352 QKSP--VFKELQEKGYLLKRPDGSLWQWDKWQ-PGLAIY-DFTNPDACKWYADKL--KGL 405
Query: 503 VGSTPSLYIWNDMNEPSVFNGPEVTMPRDALHLDRVEHRELHNAYGYYFHMATSDGLLKR 562
V + D E +P D D + +++HN Y Y ++ + +LK
Sbjct: 406 VAMGVDCFK-TDFGE---------RIPTDVQWFDGSDPQKMHNHYAYIYNELVWN-VLKD 454
Query: 563 ENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGG 622
G++ + AR+ G+Q++ W GD A +E + S+ L++GL+G F D+GG
Sbjct: 455 TVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGG 514
Query: 623 FFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPY 682
F + RW G R H R PW + + + ++R ++ +PY
Sbjct: 515 FENTAPAHVYKRWCAFGLLSSHSRLHG--SKSYRVPWAYDDESCDVVRFFTQLKCRMMPY 572
Query: 683 FYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLP 742
Y AN G P++R + MEFP D + D +M+G+ ++V V+ E A + YLP
Sbjct: 573 LYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTE-AGDVQFYLP 631
Query: 743 GKESWYDIRTGARVKGGVTHKLEVSEESVPAFQRPGTII 781
+ W + + G HK + S+P + R T++
Sbjct: 632 -EGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLL 669
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 140/553 (25%), Positives = 239/553 (43%), Gaps = 59/553 (10%)
Query: 316 LPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNY 375
LP+ ++ + +D +F G D++ Y +TG M P ++ + Q R Y
Sbjct: 385 LPANEQHELSLASETGKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERY 444
Query: 376 RDEEDVEQVDSKFDEHDIPYDVLWLDIEH--TDGKKYFTWDRLSFPHPEEMQRKL-ATKG 432
+ +++ Q ++ + IP D + LD + D +D+ FP P+ + K+ A
Sbjct: 445 KSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFPDPKALVDKVHAMNA 504
Query: 433 RHMVTIVDPHIKRDDSYWLHNEATEKGY-YVKDATKRDYDGWCWPGS-SSYLDMLNPEIR 490
+ M+++ D+Y E KG+ + ++ +++ D W G +++ D +PE
Sbjct: 505 QIMISVWPKFYPTTDNY---KELNAKGFMFNRNLDEKNLD-WIGKGYLNAFYDPFSPEAT 560
Query: 491 T-WWGTKFSYENYVGSTPSLYIWNDMNEPSV-----FNGPEVTMPRDALHLDRVEHRELH 544
+W N G W D EP + F + M +A R E+
Sbjct: 561 AIFWKQIRDKINVHGFDA---WWLDAVEPDIHSNLTFEKRKWLMTPNA----RGNGAEIF 613
Query: 545 NAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYG-AVWTGDNTAEWEQLRVSVP 603
NAY G L + G R F+L R+ F G QR G A+W+GD + W ++ +
Sbjct: 614 NAYAVPHAEGVYQGELATD-GDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIA 672
Query: 604 MILTLGLTGMSFSGADVGGFFGNPD-------------------------TELLVRWYQL 638
+ L G++ D+GGF P+ EL RWYQ
Sbjct: 673 AGIGTNLAGVTNWTFDIGGF--TPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQF 730
Query: 639 GAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAI---HVRYMFLPYFYTLFREANTTGI 695
GA+ P +R+H + RE + + T++ + +RY +PY YTL +
Sbjct: 731 GAFVPLYRSHGQN--PYREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHKDG 788
Query: 696 PVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGAR 755
++R L M+FP+D + + +M G A LV VYE +A+ VYLP WY+ TG +
Sbjct: 789 TIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLPAGSDWYNFYTGEK 848
Query: 756 VKGGVTHKLEVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVVALNSSQAAEGQL 815
+ GG T + VP F + G I+P + + +N P L++ + + +
Sbjct: 849 LAGGQTITADAPLARVPLFVKAGAIVPTGPLIQHVD-EGLNSP--LLITVYTGANGSFDI 905
Query: 816 YVDDGKSFDFLEG 828
Y DDG+S + +G
Sbjct: 906 YEDDGRSLKYQQG 918
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 197/459 (42%), Gaps = 29/459 (6%)
Query: 330 EAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAY---HQCRWNYRDEEDVEQVDS 386
E+ ++ F GP PK V+ +YT TG P++PP +S NY DE V
Sbjct: 233 ESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNY-DEATVNSFID 291
Query: 387 KFDEHDIPYDVLWLDIEHTDGKKY--FTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIK 444
E ++P V D ++ F WD L+FP PE R+L KG + ++P+I
Sbjct: 292 GXAERNLPLHVFHFDCFWXKAFQWCDFEWDPLTFPDPEGXIRRLKAKGLKICVWINPYIG 351
Query: 445 RDDSYWLHNEATEKGYYVK--DATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENY 502
+ + E EKGY +K D + +D W PG + Y D NP+ W+ K +
Sbjct: 352 QKSP--VFKELQEKGYLLKRPDGSLWQWDKWQ-PGLAIY-DFTNPDACKWYADKL--KGL 405
Query: 503 VGSTPSLYIWNDMNEPSVFNGPEVTMPRDALHLDRVEHRELHNAYGYYFHMATSDGLLKR 562
V + D E +P D D + ++ HN Y Y ++ + +LK
Sbjct: 406 VAXGVDCFK-TDFGE---------RIPTDVQWFDGSDPQKXHNHYAYIYNELVWN-VLKD 454
Query: 563 ENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGG 622
G++ + AR+ G+Q++ W GD A +E S+ L++GL+G F D+GG
Sbjct: 455 TVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESXAESLRGGLSIGLSGFGFWSHDIGG 514
Query: 623 FFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPY 682
F + RW G R H R PW + + + ++R ++ PY
Sbjct: 515 FENTAPAHVYKRWCAFGLLSSHSRLHG--SKSYRVPWAYDDESCDVVRFFTQLKCRXXPY 572
Query: 683 FYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLP 742
Y AN G P R EFP D + D + +G+ + V V+ E A + YLP
Sbjct: 573 LYREAARANARGTPXXRAXXXEFPDDPACDYLDRQYXLGDNVXVAPVFTE-AGDVQFYLP 631
Query: 743 GKESWYDIRTGARVKGGVTHKLEVSEESVPAFQRPGTII 781
+ W + + G HK + S+P + R T++
Sbjct: 632 -EGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLL 669
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 133/674 (19%), Positives = 253/674 (37%), Gaps = 138/674 (20%)
Query: 272 LYGSIPFMISHGKSGRTS----GFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFW 327
+Y + P++I +G +G + G+F N ++ ++ WN S Q+ + +
Sbjct: 254 MYYAAPWLIVNGCAGTSEQYSYGWFMDNVSQSYMNTGDTTWN--------SGQEDL-AYM 304
Query: 328 MSEAGIVDTFFFVGPGP--KDVVRQYTSVTGM----------PSMPPLFSIAYHQCRWNY 375
++ G D F G G + VV ++ + G MPP + + Q +
Sbjct: 305 GAQYGPFDQHFVYGAGGGMEXVVTAFSLLQGKEFENQVLNKRSVMPPKYVFGFFQGVFGT 364
Query: 376 -----------RDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFT-----W--DRLS 417
+ VE++ + ++ P++ L +D++ D + FT W +R+
Sbjct: 365 SSLLRAHMPAGENNISVEEIVEGYQNNNFPFEGLAVDVDMQDNLRVFTTKGEFWTANRVG 424
Query: 418 F---PHPEEMQRKLATKGRHMVTIVDPHIKRDDS---YWLHNEATEKGYYVK-------- 463
P+ + KG T + ++ D+ Y ++ E+ Y K
Sbjct: 425 TGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTD 484
Query: 464 -----DATKRDYDGWCWPGSSSYLDML-----NPEIRTWWGTKFSYENYVGSTPSLYIWN 513
D Y G G D L P++ WWG + +G ++W
Sbjct: 485 FGMTDDGPSDAYIGHLDYGGGVECDALFPDWGRPDVAEWWGNNYKKLFSIGLD---FVWQ 541
Query: 514 DMNEPSVF--------------NGPEVTMPRDALHLDRVEHREL---------------- 543
DM P++ N P P + + + H ++
Sbjct: 542 DMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYENHGREPMV 601
Query: 544 --HNAYGYYFHMAT-SDGLLKRENGKD---RPFVLARAFFAGSQRYGAVWTGDNTAEWEQ 597
N + Y +T +G+++ + R ++++R + G+Q +G +W GDN+
Sbjct: 602 TQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNY 661
Query: 598 LRVSVPMILTLGLTGMSFSGADVGGF--FGNPDT------ELLVRWYQLGAYYPFFRAH- 648
+++ + + + ++ + G+D+GGF + N + +L+VR+ Q G P+FR H
Sbjct: 662 IQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHY 721
Query: 649 ------AHHDTKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLW 702
H +E +++ +R+ + RY + YT + G P+++
Sbjct: 722 DRWIESKDHGKDYQELYMY-PNEMDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAAS 780
Query: 703 MEFPSDESTFTNDEAFMVGN----ALLVQGVYEERAKHISVYLPGKESWY----DIRT-- 752
M ++ F++G +L V E + +YLP WY D T
Sbjct: 781 MYNNDSNVRRAQNDHFLLGGHDGYRILCAPVVWENSTERELYLPVLTQWYKFGPDFDTKP 840
Query: 753 --GARVKGGVTHKLEVSEESVPAFQRPGTIIPRR----DRFRRSSTQMVNDPYTLVVALN 806
GA G + V + P F R G I+P R + +T DP V
Sbjct: 841 LEGAMNGGDRIYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPL 900
Query: 807 SSQAAEGQLYVDDG 820
+ A+G Y+DDG
Sbjct: 901 GNNRADGMCYLDDG 914
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 629 TELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNT---------QLIREAIHVRYMF 679
T+L ++ YQ+ + + H + RE F E +T ++EAI + F
Sbjct: 122 TDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF 181
Query: 680 LPYFYTLFREANTTGIPVV---RPLWMEFPSDESTFTNDEAFMVGNALLVQGVY 730
+T GIP + RP W +FP E T D F G + + V+
Sbjct: 182 F----------DTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVH 225
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 705 FPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGVTHKL 764
P+D TN EA+ V + ++ G +A I L G E++ +R R K +L
Sbjct: 39 LPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCK----QEL 94
Query: 765 EVSEESVPAFQR 776
EV +F+R
Sbjct: 95 EVMYAREKSFKR 106
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 428 LATKGRHMVTIVDPHIKRDDSYWLHNEATEKGYYVKDATKR 468
L K +VT+++PHI D++ + EA + G +K+A K+
Sbjct: 422 LRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKK 462
>pdb|2X9I|A Chain A, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|B Chain B, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|C Chain C, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|D Chain D, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
Length = 233
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 115 RFQVPDVVLPQFESKKLYLQRYSKETIDGE---GDASVVYLSDGYEAVLRHDPFEVYVRY 171
R+ PD V ++ KLYL +Y KE ID G+ + VY SD + DP Y++
Sbjct: 157 RYCKPDEVDQYLDTFKLYLTKY-KEMIDNNKPVGEDTTVY-SDFDTYMTELDPVRGYMKN 214
Query: 172 KGGNSRVLSLNSNGLFDF 189
K G R + ++ LF +
Sbjct: 215 KFGEGRSEAFVNDFLFSY 232
>pdb|2VGR|A Chain A, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|B Chain B, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|C Chain C, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|D Chain D, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
Length = 233
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 115 RFQVPDVVLPQFESKKLYLQRYSKETIDGE---GDASVVYLSDGYEAVLRHDPFEVYVRY 171
R+ PD V ++ KLYL +Y KE ID G+ + VY SD + DP Y++
Sbjct: 157 RYCKPDEVDQYLDTFKLYLTKY-KEMIDNNKPVGEDTTVY-SDFDTYMTELDPVRGYMKN 214
Query: 172 KGGNSRVLSLNSNGLFDF 189
K G R + ++ LF +
Sbjct: 215 KFGEGRSEAFVNDFLFSY 232
>pdb|2WTE|A Chain A, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution.
pdb|2WTE|B Chain B, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution
Length = 244
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 165 FEVYVRYKGGNSRVLSLNSN 184
F VYVR +GG SRV+S N N
Sbjct: 122 FTVYVRDEGGGSRVISFNDN 141
>pdb|2VCK|A Chain A, Structure Of Phycoerythrobilin Synthase Pebs From The
Cyanophage P-Ssm2 In Complex With The Bound Substrate
Biliverdin Ixa
pdb|2VCK|B Chain B, Structure Of Phycoerythrobilin Synthase Pebs From The
Cyanophage P-Ssm2 In Complex With The Bound Substrate
Biliverdin Ixa
pdb|2VCK|C Chain C, Structure Of Phycoerythrobilin Synthase Pebs From The
Cyanophage P-Ssm2 In Complex With The Bound Substrate
Biliverdin Ixa
pdb|2VCK|D Chain D, Structure Of Phycoerythrobilin Synthase Pebs From The
Cyanophage P-Ssm2 In Complex With The Bound Substrate
Biliverdin Ixa
pdb|2VCL|A Chain A, Structure Of Phycoerythrobilin Synthase Pebs From The
Cyanophage P-Ssm2 In The Substrate Free Form
Length = 233
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 115 RFQVPDVVLPQFESKKLYLQRYSKETIDGE---GDASVVYLS-DGYEAVLRHDPFEVYVR 170
R+ PD V ++ KLYL +Y KE ID G+ + VY D Y L DP Y +
Sbjct: 157 RYCKPDEVDQYLDTFKLYLTKY-KEXIDNNKPVGEDTTVYSDFDTYXTEL--DPVRGYXK 213
Query: 171 YKGGNSRVLSLNSNGLFDF 189
K G R + ++ LF +
Sbjct: 214 NKFGEGRSEAFVNDFLFSY 232
>pdb|2X9J|A Chain A, Structure Of The Mutant D206n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9J|B Chain B, Structure Of The Mutant D206n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
Length = 233
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 115 RFQVPDVVLPQFESKKLYLQRYSKETIDGE---GDASVVYLSDGYEAVLRHDPFEVYVRY 171
R+ PD V ++ KLYL +Y KE ID G+ + VY SD + +P Y++
Sbjct: 157 RYCKPDEVDQYLDTFKLYLTKY-KEMIDNNKPVGEDTTVY-SDFDTYMTELNPVRGYMKN 214
Query: 172 KGGNSRVLSLNSNGLFDF 189
K G R + ++ LF +
Sbjct: 215 KFGEGRSEAFVNDFLFSY 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,294,507
Number of Sequences: 62578
Number of extensions: 1378383
Number of successful extensions: 2788
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2679
Number of HSP's gapped (non-prelim): 40
length of query: 921
length of database: 14,973,337
effective HSP length: 108
effective length of query: 813
effective length of database: 8,214,913
effective search space: 6678724269
effective search space used: 6678724269
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)