Query 002443
Match_columns 921
No_of_seqs 1582 out of 3897
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 16:32:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002443.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1168-1172//hhsearch_pdb/002443hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 953.1 62.3 583 268-860 11-720 (723)
2 3q3e_A HMW1C-like glycosyltran 1.0 1 1 633.9 32.3 399 438-852 223-630 (631)
3 2vsy_A XCC0866; transferase, g 1.0 1 1 528.4 64.8 552 279-852 2-566 (568)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 331.1 50.8 380 52-445 3-382 (388)
5 2gw1_A Mitochondrial precursor 1.0 1 1 308.7 42.4 390 46-444 4-491 (514)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 308.4 48.7 357 88-460 5-361 (388)
7 3fp2_A TPR repeat-containing p 1.0 1 1 300.8 43.6 388 46-442 23-502 (537)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 298.2 49.6 402 46-461 82-573 (597)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 288.5 49.5 389 47-443 116-591 (597)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 284.4 46.0 367 41-436 19-415 (450)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=953.11 Aligned_cols=583 Identities=28% Similarity=0.421 Sum_probs=487.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99963356641499999999999999858999999999999999739969999999999860999999999999999986
Q 002443 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (921)
Q Consensus 268 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (921)
++..+|.++..+|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|++..++.++|.++..+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998699999999999999868998999999999999869999999999999980999899999999999984
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99899999999999609999999999999999919999999999999992999799999999999990999999999999
Q 002443 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
|++++|+++|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|.+.+++
T Consensus 91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999809998999999999999869999999999999973999857774055677740149999999999
Q ss_pred HHHCCCCCHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHH----H-CCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 86209998205765----99995412589928999999999989974----3-038878888899998835602379844
Q 002443 428 CLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPDYF 498 (921)
Q Consensus 428 al~l~P~~~~a~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lriG~vS~d~~ 498 (921)
++++.|+....... ....+.+........ ...+.++..... . .++.......+.+.++|||||+|+||+
T Consensus 171 al~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~--aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~df~ 248 (723)
T 4gyw_A 171 LVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK--AIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFG 248 (723)
T ss_dssp HHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHH--HHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESCSS
T ss_pred HHHHCHHHHHHCCCCCCCHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHC
T ss_conf 999676578643474212024543304888999--999999985321110134764457532346655431456414221
Q ss_pred CCHHHHHHHCCCCCCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCEEEECCCC-CHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 560433000001234688429999844667-8755599999985407816884479-99999999781996299953898
Q 002443 499 THSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELTGH 576 (921)
Q Consensus 499 ~h~v~~~~~~~l~~~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dilv~l~g~ 576 (921)
+|||++++.+++++||+++|||++|+.+.. .|..+.++ ...+++|+++.++ ++.+++++|++|+|||||||+||
T Consensus 249 ~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g~ 324 (723)
T 4gyw_A 249 NHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKV----MAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGY 324 (723)
T ss_dssp SSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHH----HHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEEESCSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH----HHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 471788999999972457446999976898860899999----9864134020127847999999874265067722577
Q ss_pred CCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC----------
Q ss_conf 9988212210399765885035888889897448982698899776567654247749985323799999----------
Q 002443 577 TANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEA---------- 646 (921)
Q Consensus 577 ~~~~~~~~~~~r~Apvq~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~---------- 646 (921)
|.++|+.+|++|||||||+|||||+|||+++|||+|+|.+++|++.+.+|+||+++||++|+|++|....
T Consensus 325 t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~~~ 404 (723)
T 4gyw_A 325 TKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVID 404 (723)
T ss_dssp BTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEEEC
T ss_pred CCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78876325650888723552147877788767779868887880034306000132787540378511254433354322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002443 647 -------------------------------------------------------------------------------- 646 (921)
Q Consensus 647 -------------------------------------------------------------------------------- 646 (921)
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~g~ 484 (723)
T 4gyw_A 405 FKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGF 484 (723)
T ss_dssp CC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEEETTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23344323442123554321000233210011213444444332221112455554321110110001234333233443
Q ss_pred --------------------------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --------------------------999999877789718983388775798899999999967599089982278899
Q 002443 647 --------------------------GPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC 700 (921)
Q Consensus 647 --------------------------~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 700 (921)
.+.+..++|+++.|||||||+++||+|.++++|++||++||+|+|||+..+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~-- 562 (723)
T 4gyw_A 485 SISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA-- 562 (723)
T ss_dssp EEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCH--
T ss_conf 223432211112100012235543332216541999797799968840138999999999999858997399980767--
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHH
Q ss_conf 78999999999984999997777368679077997514565882698999942189874409968723799656652057
Q 002443 701 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 780 (921)
Q Consensus 701 ~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~~D~~ld~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~ 780 (921)
....++++.++++||+++||+|.|.++ ..+|++.|..+||+|||||||||||++|||||||||||++|.+|+||+|+|
T Consensus 563 -~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s 640 (723)
T 4gyw_A 563 -VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAAS 640 (723)
T ss_dssp -GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHH
T ss_pred -HHHHHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHH
T ss_conf -779999999996599957488789999-999999867983984797959789999999729997976589731769999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 87640885211489879999999971499999999999999743099999699999999999999999863999973125
Q 002443 781 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRM 860 (921)
Q Consensus 781 ~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~~~ 860 (921)
+|+++|++||||.|.++|+++|++|++|+++|+++|+++|+++.+||+||.++|+++||++|++||+|||+|.+|.++.+
T Consensus 641 ~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~~~ 720 (723)
T 4gyw_A 641 QLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHMIK 720 (723)
T ss_dssp HHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99976995123599999999999996699999999999999887486868899999999999999999976999976006
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=1.00 E-value=1 Score=633.89 Aligned_cols=399 Identities=15% Similarity=0.161 Sum_probs=332.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HH--CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 57659999541258992899999999998997-43--0388788888999988356023798445604330000012346
Q 002443 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFM-RL--YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHD 514 (921)
Q Consensus 438 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~lriG~vS~d~~~h~v~~~~~~~l~~~d 514 (921)
...+-.+-+.|...-+..+..+....+.++.. .. ....+....++.+++++++||+|.++++|+|++++.+++.. |
T Consensus 223 ~~~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-d 301 (631)
T 3q3e_A 223 ISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-A 301 (631)
T ss_dssp GHHHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-H
T ss_pred HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH-H
T ss_conf 314623660477973158899999999998667645974566677787789717999958655888189999999996-3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCC----HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCCC
Q ss_conf 8842999984466787555999999854078168844799----999999978199629995389899882122103997
Q 002443 515 YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590 (921)
Q Consensus 515 ~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~dilv~l~g~~~~~~~~~~~~r~A 590 (921)
|++|||++|+ +...|+.+. ..++.|+++.+++ +.+++++|++|+|||||||+|||.+.++.++++|||
T Consensus 302 R~~FEV~~Ys-~~~~D~~tr-------~~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpA 373 (631)
T 3q3e_A 302 REHFYLIGLG-SPSVDQAGQ-------EVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLA 373 (631)
T ss_dssp TTTSEEEEEE-CTTSCHHHH-------TTSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCS
T ss_pred HHCEEEEEEE-CCCCCHHHH-------HCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC
T ss_conf 5368999996-898788788-------60867999978875456999999998659989997999987004788768990
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCCC
Q ss_conf 658850358888898974489826988997765676542477499853237999999999998777-8971898338877
Q 002443 591 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT-NGFITFGSFNNLA 669 (921)
Q Consensus 591 pvq~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 669 (921)
||||+|+|||+|||+++|||+|+|+.+.| .+.+|+|+++|||++++||.|+...|...+.+... +|.|||||||+++
T Consensus 374 PVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~ 451 (631)
T 3q3e_A 374 PIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTM 451 (631)
T ss_dssp SEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEECST
T ss_pred HHEEECCCCCCCCCCCCCCEEEECCCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 63375058875457666778996897778--3237600279789986334784347764334577678848999898656
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCEEECCCCC
Q ss_conf 57988999999999675990899822788997899999999998499999777736867907799751456588269899
Q 002443 670 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 749 (921)
Q Consensus 670 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~~D~~ld~~~~ 749 (921)
|++|.++++|++||+++|+++||++..+. .+.....+.+.+.++||+ +||+|+|.++ ..+|++.|+.+||+||||||
T Consensus 452 Ki~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy 528 (631)
T 3q3e_A 452 KLNPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYLG-DSATAHPHSP-YHQYLRILHNCDMMVNPFPF 528 (631)
T ss_dssp TCCHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHHG-GGEEEECCCC-HHHHHHHHHTCSEEECCSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCHHHHHHHHHHHHCCCC-CCEEECCCCC-HHHHHHHHHCCCEEEECCCC
T ss_conf 68999999999999868985899872378-711558999999982999-5489868899-89999998428599969855
Q ss_pred CCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99421898744099687237996566520578764088521-14898799999999714999999999999997430999
Q 002443 750 AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 828 (921)
Q Consensus 750 ~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~-v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~ 828 (921)
+||||++|||||||||||++|+.+++|+|+|+|.++|++|| |++|+++|+++|++|++|++.|+++|+++++++..+++
T Consensus 529 ~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spL 608 (631)
T 3q3e_A 529 GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTL 608 (631)
T ss_dssp CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHH
T ss_pred CCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 69718999997699889526885788867898874699764523999999999999967999999999999987653777
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 996999999999999999998639
Q 002443 829 CDGQNFALGLESTYRNMWHRYCKG 852 (921)
Q Consensus 829 ~~~~~~~~~~e~~~~~~~~~~~~~ 852 (921)
|| .+++.||+.|+++|++|.+.
T Consensus 609 Fd--~~~~~~e~~ye~~~~~w~~~ 630 (631)
T 3q3e_A 609 FT--GDPRPMGQVFLEKLNAFLKE 630 (631)
T ss_dssp TC--SCCTHHHHHHHHHHHHHHHC
T ss_pred CC--HHHHHHHHHHHHHHHHHHHC
T ss_conf 12--32999999999999998742
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=1.00 E-value=1 Score=528.36 Aligned_cols=552 Identities=21% Similarity=0.256 Sum_probs=483.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 49999999999999985899999999999999973996999999999986099999999999999998699899999999
Q 002443 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (921)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (921)
.+++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 86599999999999975999889999999999986999999999999997399989999999999998799999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 999609999999999999999919999999999999992999799999999999990---99999999999986209998
Q 002443 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~l~P~~ 435 (921)
++++.+|++..++.++|.++...|++++|++.++++++.+|++..++..++.++..+ |++++|.+.++++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99743999999999999999875889999999999998589988999999999997325121899999999998468766
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCC--
Q ss_conf 20576599995412589928999999999989-974303887888889999883560237984456043300000123--
Q 002443 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR-FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (921)
Q Consensus 436 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lriG~vS~d~~~h~v~~~~~~~l~~-- 512 (921)
...+..+. ..+........+.|..+ +.....+. ...+..+.+++||+++++++..|++..++..++..
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 68177727-------99989999999999973147656778--8887789998089998864100708999999986056
Q ss_pred CCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCCCC
Q ss_conf 4688429999844667-875559999998540781688447999999999781996299953898998821221039976
Q 002443 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (921)
Q Consensus 513 ~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dilv~l~g~~~~~~~~~~~~r~Ap 591 (921)
+++.+|+|++|+.... .+....+++. .. .|+.+..++..++.+.|+.+++||+++.++|+.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHH----CC-EEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCC
T ss_conf 880128999997999876599999874----47-6997889999999999986899799989887776667787469975
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEEEECC
Q ss_conf 588503588888989744898269889977656765424774998532379999-----999999987778971898338
Q 002443 592 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPE-----AGPVCPTPALTNGFITFGSFN 666 (921)
Q Consensus 592 vq~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 666 (921)
+|++|+|||.++|++.+||+++|.++.+.+....|.|++..+|+. |.|.+. ..+.+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn~---~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGA---FQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSSC---SCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 157653677465887752998798768865556881106717876---77997777888898732248999977999688
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 87757988999999999675990899822-78899789999999999849999977773686790779975145658826
Q 002443 667 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 745 (921)
Q Consensus 667 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~rv~~~~~~~~~~~~~~~~~~~D~~ld 745 (921)
...|..+.++++|.+|+++.|+.+|+++| .+ ..+..+++.+.++|++.++|+|+|.++ ..++...|..+||||+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHHHHCCCCHHHEEEECCCC-HHHHHHHHHCCCEEEE
T ss_conf 41469989999999999868996799953988----999999999997699866778607899-7999999843878832
Q ss_pred CCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 98999942189874409968723799656652057876408852114898799999999714999999999999997430
Q 002443 746 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 825 (921)
Q Consensus 746 ~~~~~g~~t~~eal~~G~Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~ 825 (921)
|+++++|++++|||++|+|||+++|..+.+++|++++..+|++|+|.+|.+++++.+.+|.+|++.+..++++.++++..
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 88989718899999679998965588700779999999779905300999999999999956999999999999986550
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999996999999999999999998639
Q 002443 826 SPVCDGQNFALGLESTYRNMWHRYCKG 852 (921)
Q Consensus 826 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ 852 (921)
...|+++.+++.++++|+++|++||..
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 888899999999999999999999862
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=331.08 Aligned_cols=380 Identities=27% Similarity=0.379 Sum_probs=362.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999689999999999999980999889999989999981799999999999998099978899999999998399
Q 002443 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (921)
Q Consensus 52 l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (921)
+.+|..++..|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.+..++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 55799998779999999999999984978899999999999986899999999999976197866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 79999999999963999957688999999988999997099299999999999419999999999999999819999999
Q 002443 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (921)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (921)
+++|+..|++++...|++... +..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998749653999-------9999999998589999999999999759896899999999999846899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998399979999999999998799999999999999729990999998999999633566414999999999999
Q 002443 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (921)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~ 291 (921)
..|+++++..|.+..++..+|.++...|++++|+..|+++++..|+....+..+ |..+...+++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-------GNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHH
T ss_conf 999999872989789999999999985999999999999985598867999999-------9999985789999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99858999999999999999739969999999999860999999999999999986998999999999996099999999
Q 002443 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (921)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (921)
++...|++..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|.+..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98529687899999999999868899999999999864999889999999999986997999999999986494449999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999919999999999999992999799999999999990999999999999862099982057659999
Q 002443 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (921)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~a 445 (921)
..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|++..++.++...
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999848999999999999860987399997799999986888999999999986199978999859999
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=308.66 Aligned_cols=390 Identities=16% Similarity=0.116 Sum_probs=356.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 43698999999999689999999999999980999889999989999981799999999999998099978899999999
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
..++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 4579999987899986027899999999985592-278998688999988549999999987760693789999988899
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH-------------------------------------------------
Q ss_conf 9983997999999999996399995768899-------------------------------------------------
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL------------------------------------------------- 156 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------------------- 156 (921)
+...|++++|+..|++++...|.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 99876688899999999955987511378999999999999999999998999987665126772467886344786158
Q ss_pred -----------------------HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHH
Q ss_conf -----------------------9999988999997---0992999999999994-----1--9-------999999999
Q 002443 157 -----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYN 196 (921)
Q Consensus 157 -----------------------a~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~ 196 (921)
...+...|..+.. .|++++|+..+++++. . . |....++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999862587888887259958889999899998762332299999999999988665422381001148278999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981999999999999998399979999999999998799999999999999729990999998999999633566
Q 002443 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (921)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 276 (921)
+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+...+..++.+ +
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-------~ 314 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM-------N 314 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH-------H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-------H
T ss_conf 999999878999999999999863864-89999999999988889999999999861386778999999999-------9
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 41499999999999999858999999999999999739969999999999860999999999999999986998999999
Q 002443 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (921)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (921)
...+++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98077999999999998738502899999999999868999999999999987546778999999999878899999999
Q ss_pred HHHHHHHCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999960999999------99999999999---19999999999999992999799999999999990999999999999
Q 002443 357 YQMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (921)
Q Consensus 357 ~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (921)
++++++..|.+.. ++..+|.++.. .|++++|+..+++++...|++..++..+|.++...|++++|+..|++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999761233217899999999999986633258889999999999875855589999999999982579999999999
Q ss_pred HHHCCCCCHHHHHHHHH
Q ss_conf 86209998205765999
Q 002443 428 CLKIDPDSRNAGQNRLL 444 (921)
Q Consensus 428 al~l~P~~~~a~~~~~~ 444 (921)
+++++|++..+...+.+
T Consensus 475 a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 475 SADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHCSSHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHH
T ss_conf 98766146889999999
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=308.38 Aligned_cols=357 Identities=25% Similarity=0.354 Sum_probs=189.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999981799999999999998099978899999999998399799999999999639999576889999999889999
Q 002443 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (921)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 167 (921)
+|..++..|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.+... +..+|.++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~-------~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA-------YSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHH
T ss_conf 79999877999999999999998497889999999999998689999999999997619786699-------99999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 97099299999999999419999999999999999819999999999999983999799999999999987999999999
Q 002443 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (921)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (921)
...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++..|+....+..+|.++...|++++|+..
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 87799999999999998749653999999999999858999999999999975989689999999999984689999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999729990999998999999633566414999999999999998589999999999999997399699999999998
Q 002443 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (921)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (921)
|+++++..|++...+..++.+ +...|++++|+..++++++.+|....++..+|.++...+++++|+..+++++
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~-------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 158 YLKAIETQPNFAVAWSNLGCV-------FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-------HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999987298978999999999-------9985999999999999985598867999999999998578999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 60999999999999999986998999999999996099999999999999999199999999999999929997999999
Q 002443 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (921)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 407 (921)
...|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++..|.+..++..
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 52968789999999999986889999999999986499988999999999998699799999999998649444999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999990999999999999862099982057659999541258992899999
Q 002443 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (921)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~a~~~~~~~~~~~~~~~ 460 (921)
++.++...|++++|+..++++++++|++..++.++ +..+...|+.+++...
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL--ASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH--HHHHHTTTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHCCCHHHHHHH
T ss_conf 99999984899999999999986098739999779--9999986888999999
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=300.77 Aligned_cols=388 Identities=16% Similarity=0.152 Sum_probs=345.2
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 43698999999999689999999999999980999889999989999981799999999999998099978899999999
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
..++.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88999999999999864299999999999863899848999999999986899999999999986098628999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHH--------------------------------------------------
Q ss_conf 998399799999999999639999576889--------------------------------------------------
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPAAEC-------------------------------------------------- 155 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------------------------------------------- 155 (921)
+...|++++|+..|+ ++...|+.......
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 998389999999999-9864878785889999987789889999999997474545434506757999997447499999
Q ss_pred --------------HHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCCHHH
Q ss_conf --------------99999988-----99999709929999999999941999999-------99999999998199999
Q 002443 156 --------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDT 209 (921)
Q Consensus 156 --------------la~~~~~l-----g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~ 209 (921)
+...+..+ +......+++++|+..++++++..|.+.. ++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 87632564617899999998788764020688887999999999999987877404459999999999999875455789
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999983999799999999999987999999999999997299909999989999996335664149999999999
Q 002443 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (921)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~~~~ 289 (921)
|+..++++++..|. ...+..+|.++...|++++|+..++++++..|++...+..++.++ ...+++++|+..+
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY-------FILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------HHCCCHHHHHHHH
T ss_conf 99999999866987-469999999999803799999999997545999879999999999-------8668999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-
Q ss_conf 9999858999999999999999739969999999999860999999999999999986998999999999996099999-
Q 002443 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS- 368 (921)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 368 (921)
++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|.+.
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 99998599977999999999998477999999999998739998599999999998837889999999999870976244
Q ss_pred -----HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf -----9999999999991----------9999999999999992999799999999999990999999999999862099
Q 002443 369 -----QSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (921)
Q Consensus 369 -----~~~~~la~~~~~~----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 433 (921)
..+..+|.++... |++++|+..++++++.+|++..++..+|.+|..+|++++|+..|+++++++|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 68889999988999999764010022475799999999999974999789999999999985149999999999998689
Q ss_pred CCHHHHHHH
Q ss_conf 982057659
Q 002443 434 DSRNAGQNR 442 (921)
Q Consensus 434 ~~~~a~~~~ 442 (921)
+........
T Consensus 494 ~~~~~~~~~ 502 (537)
T 3fp2_A 494 TMDEKLQAT 502 (537)
T ss_dssp -CHHHHHHH
T ss_pred CCHHHHHHH
T ss_conf 938888887
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=298.17 Aligned_cols=402 Identities=16% Similarity=0.082 Sum_probs=240.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 43698999999999689999999999999980999889999989999981799999999999998099978899999999
Q 002443 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (921)
Q Consensus 46 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (921)
.+...+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..|++++.. +.+..++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 899999999999987458347999999999608993-57999999999747699999999987335-4565089999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 998399799999999999639999576------------88999999988999997099299999999999419999999
Q 002443 126 YKDEGRLVEAAESYHKALSADPSYKPA------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (921)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (921)
|...|++++|+..|++ ..|..... ......++..+|..+...|++++|+..|+++++.+|....+
T Consensus 160 ~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9988669999999842---4886322323433432112351258999998899998399899999999999729325699
Q ss_pred H-----------------------------------------------------------------------HHHHHHHH
Q ss_conf 9-----------------------------------------------------------------------99999999
Q 002443 194 Y-----------------------------------------------------------------------YNLGVVYS 202 (921)
Q Consensus 194 ~-----------------------------------------------------------------------~~la~~~~ 202 (921)
+ ..++.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999850346156789998657742344308899999999999980731399999999876438830999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81999999999999998399979999999999998799999999999999729990999998999999633566414999
Q 002443 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (921)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~ 282 (921)
..|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+...+.. ++..+...|++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~ 389 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA-------VGIYYLCVNKI 389 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH-------HHHHHHHTTCH
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHHHHHCCH
T ss_conf 84689999999999997295537999999999998277779999999998518354799999-------99999983569
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999858999999999999999739969999999999860999999999999999986998999999999996
Q 002443 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (921)
Q Consensus 283 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (921)
++|+..++++++..|.+...+..++.++...|++++|+..|+++++..|.+...+..++.++...|++++|+++|+++++
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999998729777899999999999757779999999999986813438999999999985799999999999998
Q ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 09999999999999999919999999999999992------9997-9999999999999099999999999986209998
Q 002443 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (921)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 435 (921)
..|.+..++..++.++...|++++|++.++++++. +|+. ..++..++.+|...|++++|+..|+++++++|++
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 48887679999999999818999999999999985323454535499999999999998047999999999999738997
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 20576599995412589928999999
Q 002443 436 RNAGQNRLLAMNYINEGHDDKLFEAH 461 (921)
Q Consensus 436 ~~a~~~~~~a~~~~~~~~~~~~~~~~ 461 (921)
..++.. ++..|...|+.+++.+..
T Consensus 550 ~~~~~~--l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 550 ANVHTA--IALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHH--HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHCCHHHHHHHH
T ss_conf 389999--999999817899999999
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=288.47 Aligned_cols=389 Identities=18% Similarity=0.173 Sum_probs=352.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--------------
Q ss_conf 369899999999968999999999999998099988999998999998179999999999999809--------------
Q 002443 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------------- 112 (921)
Q Consensus 47 ~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 112 (921)
+...++.++..+...|++++|+..|++++.. +.+..++..++.+|...|++++|+..|++.....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCS
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9357999999999747699999999987335-456508999999999886699999998424886322323433432112
Q ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH----------------------------------
Q ss_conf --99788999999999983997999999999996399995768899----------------------------------
Q 002443 113 --PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL---------------------------------- 156 (921)
Q Consensus 113 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------------------------------- 156 (921)
+.+..++..+|.+|...|++++|+..|+++++..|.+...+..+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 35125899999889999839989999999999972932569999999850346156789998657742344308899999
Q ss_pred ------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf ------------------------------99999889999970992999999999994199999999999999998199
Q 002443 157 ------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (921)
Q Consensus 157 ------------------------------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (921)
..++..++..+...|++++|+..|+++++..|.+..++..++.++...|+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998073139999999987643883099999999999984689999999999997295537999999999998277
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999983999799999999999987999999999999997299909999989999996335664149999999
Q 002443 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (921)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~~~~~~A~ 286 (921)
+++|+..++++++..|.+...+..++.+|...|++++|+..|+++++..|.+...+..++.++.. .|++++|+
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~ 427 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-------EGEHDQAI 427 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCHHHHH
T ss_conf 77999999999851835479999999999983569999999999987297778999999999997-------57779999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Q ss_conf 99999998589999999999999997399699999999998609999999999999999869989999999999960---
Q 002443 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--- 363 (921)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 363 (921)
..++++++..|.+...+..++.++...|++++|+..++++++..|.+...+..++.++...|++++|++.|+++++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 99999998681343899999999998579999999999999848887679999999999818999999999999985323
Q ss_pred ---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf ---9999-999999999999919999999999999992999799999999999990999999999999862099982057
Q 002443 364 ---KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (921)
Q Consensus 364 ---~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 439 (921)
+|+. ..++..++.++...|++++|+..++++++..|++..++..++.+|...|++++|.+.|+++++++|++..++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45453549999999999999804799999999999973899738999999999981789999999999972088874899
Q ss_pred HHHH
Q ss_conf 6599
Q 002443 440 QNRL 443 (921)
Q Consensus 440 ~~~~ 443 (921)
..+.
T Consensus 588 ~~l~ 591 (597)
T 2xpi_A 588 DLLK 591 (597)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=284.36 Aligned_cols=367 Identities=17% Similarity=0.194 Sum_probs=304.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 54578436989999999996899999999999999809998899999899999817999999999999980999788999
Q 002443 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (921)
Q Consensus 41 ~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (921)
....+.+...++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 66537899999999999998799999999999999849716899999999999879979999999999844987489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999983997999999999996399995---768899999-----998899999709929999999999941999999
Q 002443 121 HCGILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192 (921)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 192 (921)
.+|.++...|++++|+..|+++++..|.+. ..+..++.+ +..+|..+...|++++|+..+++++...|.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999998699999999999997249997016889999999999999999999999868999999999999986889769
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998199999999999999839997999999999999879999999999999972999099999899999963
Q 002443 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (921)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l 272 (921)
++..+|.+|...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|+....+..+..+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--- 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--- 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
T ss_conf 99999999987799999999999999868898799999999999759999999999999875998089999999999---
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCC
Q ss_conf 35664149999999999999985899999999999999973996999999999986099999----99999999999869
Q 002443 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRD 348 (921)
Q Consensus 273 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 348 (921)
.......++.++...|++++|+..++++++..|.+. ..+..+|.++...|
T Consensus 256 --------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 256 --------------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred --------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf --------------------------999999999999871799999999999985087336899999999999999878
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------HHHCC
Q ss_conf 989999999999960999999999999999991999999999999999299979999999999------------99909
Q 002443 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG 416 (921)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~------------~~~~g 416 (921)
++++|+..++++++..|++..++..+|.++...|++++|+..++++++++|++..++..++.+ |..+|
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 89999999999988484548999999999987037999999999998859352999999999999864335056999818
Q ss_pred -----CHHHHHHHHHH-HHHCCCCCH
Q ss_conf -----99999999999-862099982
Q 002443 417 -----SISLAIDAYEQ-CLKIDPDSR 436 (921)
Q Consensus 417 -----~~~~A~~~~~~-al~l~P~~~ 436 (921)
+.+++.+.|++ +++..|++.
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 98668989999999999997598979
Done!