Query 002446
Match_columns 921
No_of_seqs 336 out of 2357
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 15:49:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002446.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1173-1177//hhsearch_pdb/002446hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 1.0 1 1 228.4 32.6 241 84-501 15-272 (355)
2 1vyh_C Platelet-activating fac 1.0 1 1 203.8 35.5 296 85-499 105-410 (410)
3 3ow8_A WD repeat-containing pr 1.0 1 1 203.4 34.2 282 83-498 27-319 (321)
4 4gqb_B Methylosome protein 50; 1.0 1 1 199.7 33.3 100 384-501 231-332 (344)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 197.2 38.1 258 84-515 51-316 (340)
6 1nr0_A Actin interacting prote 1.0 1 1 196.1 35.0 52 88-147 18-69 (611)
7 1vyh_C Platelet-activating fac 1.0 1 1 196.0 32.6 254 130-515 101-384 (410)
8 4g56_B MGC81050 protein; prote 1.0 1 1 194.9 28.7 287 85-507 39-350 (357)
9 4h5i_A Guanine nucleotide-exch 1.0 1 1 191.0 35.1 217 206-501 104-344 (365)
10 4gqb_B Methylosome protein 50; 1.0 1 1 190.5 29.8 254 86-515 28-303 (344)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=1.00 E-value=1 Score=228.42 Aligned_cols=241 Identities=22% Similarity=0.309 Sum_probs=191.2
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999858999982035777878859999816958999715899817833430478899999208987745457434678
Q 002446 84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR 163 (921)
Q Consensus 84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~r 163 (921)
...|++.|..++|.. |+ .+|+.|.++|++|||+++ ...+.....+.+..+.+++. .
T Consensus 15 ~~~h~~~V~~v~fs~---dg----~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~--------------~ 70 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ---DQ----SCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR--------------T 70 (355)
T ss_dssp ----CCCCCEEEECT---TS----SEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT--------------S
T ss_pred CCCCCCCEEEEEECC---CC----CEEEEECCCEEEEEECCC---CCEEEEEECCCEEEEEECCC--------------C
T ss_conf 125788357999999---99----889997488799994677---51255540597679999577--------------9
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 88999928988677544578543348998876788999878969999978999199999389978999973989999919
Q 002446 164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQA 243 (921)
Q Consensus 164 PLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~S~riLAVa~~ 243 (921)
.++++++++. .+|++||+++++.+.++.+++.|.++.++++.++++.+
T Consensus 71 ~~~~~~~~~d--------------------------------~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 118 (355)
T 3vu4_A 71 NYVAFVTGVK--------------------------------EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYG 118 (355)
T ss_dssp SEEEEECSST--------------------------------TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred CEEEEEECCC--------------------------------CEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 9899997996--------------------------------68999999999599999878846789974987999993
Q ss_pred CEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999988999-47799961887558899998774456213447248961898400389865886554454556656899
Q 002446 244 AQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 322 (921)
Q Consensus 244 ~~I~IfDl~T~-~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g 322 (921)
++|++||+.+. +.+.++.+ + .+.+++++.+||++
T Consensus 119 ~~i~i~d~~~~~~~~~~~~~-~--------------~~~~~~s~~~la~~------------------------------ 153 (355)
T 3vu4_A 119 DVISVFKFGNPWKRITDDIR-F--------------GGVCEFSNGLLVYS------------------------------ 153 (355)
T ss_dssp TEEEEEESSTTCCBSSCCEE-E--------------EEEEEEETTEEEEE------------------------------
T ss_pred CEEEEEECCCCCEEEEEECC-C--------------CCEEEEECCEEEEE------------------------------
T ss_conf 98999988877304577616-8--------------94699980689996------------------------------
Q ss_pred CCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-
Q ss_conf 6300011000000101157517765421233323456898677443358998899546766566888779999899981-
Q 002446 323 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN- 401 (921)
Q Consensus 323 ~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~- 401 (921)
++..+|.|++||+.++.
T Consensus 154 --------------------------------------------------------------sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 154 --------------------------------------------------------------NEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp --------------------------------------------------------------ESSCTTCEEEEECCC---
T ss_pred --------------------------------------------------------------CCCCCCEEEEEECCCCCC
T ss_conf --------------------------------------------------------------888686899998878876
Q ss_pred --------------E-EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf --------------6-8893148988589998899999999966997899995898998888766788731599997416
Q 002446 402 --------------V-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 466 (921)
Q Consensus 402 --------------~-ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG 466 (921)
+ +..+.+|..+|.+++|+|+|++|||++.||+.|+|||+.++ ..+.++++|
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------------~~~~~~~~g 237 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------------VLVREFRRG 237 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------------CEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC--------------CEEEEEECC
T ss_conf 532335544343476117997667845899999999999999589989999998999--------------597898738
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 66432899999569999999949991999846899
Q 002446 467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 501 (921)
Q Consensus 467 ~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~ 501 (921)
.+...|.+++|+||+++|++++.|++++||++...
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 99884899998799999999989997999986688
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=203.77 Aligned_cols=296 Identities=11% Similarity=0.153 Sum_probs=192.9
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999985899998203577787885999981-6958999715899817833430478899999208987745457434678
Q 002446 85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR 163 (921)
Q Consensus 85 ~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~r 163 (921)
.+|++.|..+.|.. ++ .+|+.|. ++.++|||+++ ++....+..|.++|.++.+.|. .
T Consensus 105 ~gh~~~V~~~~~~p---~~----~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~--------------~ 162 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP---VF----SVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHS--------------G 162 (410)
T ss_dssp ECCSSCEEEEEECS---SS----SEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTT--------------S
T ss_pred CCCCCCEEEEEECC---CC----CEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEEECCC--------------C
T ss_conf 16677689999969---99----9899993898599998999-9377888166786878998599--------------9
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEEC--CCEEEE
Q ss_conf 8899992898867754457854334899887678899987896999997899919999938-9978999973--989999
Q 002446 164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI 240 (921)
Q Consensus 164 PLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S~V~sI~~S--~riLAV 240 (921)
.+|+.++. | ++|++||+.++++++++.. ...|.++.++ ++.|+.
T Consensus 163 ~~l~sgs~----------D-----------------------~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s 209 (410)
T 1vyh_C 163 KLLASCSA----------D-----------------------MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 209 (410)
T ss_dssp SEEEEEET----------T-----------------------SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEEC----------C-----------------------CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
T ss_conf 99999918----------9-----------------------81999958998266998289997789999679999999
Q ss_pred -EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCC--CEECCCCCCCCC-CCCCCCC
Q ss_conf -9199899998899947799961887558899998774456213447--248961898--400389865886-5544545
Q 002446 241 -CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQ-HLMQSRS 314 (921)
Q Consensus 241 -a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~--~~~s~~GrvsPq-~l~~s~~ 314 (921)
+.++.|++||+.+.+++.++..+... ...+++.+ ++||.++.+ +.+|......+. .+.
T Consensus 210 ~s~D~~i~~wd~~~~~~~~~~~~h~~~------------v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---- 273 (410)
T 1vyh_C 210 ASRDKTIKMWEVQTGYCVKTFTGHREW------------VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---- 273 (410)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC------------EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred EECCCEEEEEECCCCCEEEEEECCCCC------------EEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC----
T ss_conf 968996999989999489999278862------------8999998999999999189909999898974366733----
Q ss_pred CCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 56656899630001100000010115751776542123332345689867744335899889954676656688877999
Q 002446 315 FSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIV 394 (921)
Q Consensus 315 ~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~I 394 (921)
.....+ ..+...-+..+..+... .+.. ....+ .....++.+..+|.|++
T Consensus 274 -----~h~~~v------------~~~~~~~~~~~~~~~~~------~~~~---~~~~~-----~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 274 -----EHRHVV------------ECISWAPESSYSSISEA------TGSE---TKKSG-----KPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp -----CCSSCE------------EEEEECCSCGGGGGGGC------CSCC---------------CCEEEEEETTSEEEE
T ss_pred -----CCCCEE------------EEEEECCCCCCCCHHHH------CCCC---CCCCC-----CCCCEEEEEECCCEEEE
T ss_conf -----787458------------99998586554310121------2555---55667-----88889999938984999
Q ss_pred EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 98999816889314898858999889999999996699789999589899888876678873159999741666432899
Q 002446 395 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 474 (921)
Q Consensus 395 wDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~s 474 (921)
||+.++.++..+.+|...|.+++|+|+|.+|++++.||+ |+|||+.++ ..+..+. ++. ..|.+
T Consensus 323 wd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~--------------~~~~~~~-~h~-~~v~~ 385 (410)
T 1vyh_C 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNK--------------RCMKTLN-AHE-HFVTS 385 (410)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTS--------------CCCEEEE-CCS-SCEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC--------------CEEEEEC-CCC-CCEEE
T ss_conf 988999669999778885899999499899999959792-999989999--------------0689984-777-86899
Q ss_pred EEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9995699999999499919998468
Q 002446 475 ISFSDDSNWIMISSSRGTSHLFAIN 499 (921)
Q Consensus 475 IaFSpDs~~LAsgS~DGTVhIwdi~ 499 (921)
++|+|++.+|++++.|++|+||++.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEECCCCCEEEEEECCCCEEEEECC
T ss_conf 9982899999999279948997379
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=203.40 Aligned_cols=282 Identities=14% Similarity=0.236 Sum_probs=157.7
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEE--EEEEEECCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999985899998203577787885999981-6958999715899817--83343047889999920898774545743
Q 002446 83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVH--DLVSRYDGPVSFMQMLPRPITSKRSRDKF 159 (921)
Q Consensus 83 ~~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~--eivS~~dGpVr~i~ilP~P~~~~~~~d~F 159 (921)
...+|.+.|..+.|.. ++......|+.|. ++.++|||+... ... ..+..|.++|.++.+.+.
T Consensus 27 ~~~~H~~~V~~v~~~~---~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~----------- 91 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGT---NKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHT----------- 91 (321)
T ss_dssp ETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSS-----------
T ss_pred ECCCCCCCEEEEEEEC---CCCCCCCEEEEECCCCCEEEEECCCC-CEEEEEEECCCCCCEEEEEECCC-----------
T ss_conf 2156889679999824---88888888999849998999889899-74366600567788899998899-----------
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEEC--CC
Q ss_conf 46788899992898867754457854334899887678899987896999997899919999938-9978999973--98
Q 002446 160 AEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR 236 (921)
Q Consensus 160 ~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S~V~sI~~S--~r 236 (921)
.++++.++. | ++|++||+.+++.+..+.. +..+..+.++ ++
T Consensus 92 ---~~~l~s~s~----------D-----------------------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 92 ---LPIAASSSL----------D-----------------------AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp ---SSEEEEEET----------T-----------------------SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred ---CCEEEEEEC----------C-----------------------CCEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf ---998999937----------9-----------------------8099997899979899937985679999999999
Q ss_pred EEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCC--CEECCCCCCCCCCCCC
Q ss_conf 9999-9199899998899947799961887558899998774456213447--248961898--4003898658865544
Q 002446 237 VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQ 311 (921)
Q Consensus 237 iLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~--~~~s~~GrvsPq~l~~ 311 (921)
+|++ ..++.|++||+.+.+..+++..+... ...++++| ++||.++.+ +.+|.
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~------------v~~~~~spdg~~lasg~~dg~i~iwd----------- 192 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKF------------ILSIAYSPDGKYLASGAIDGIINIFD----------- 192 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSEEEEEECSSSC------------EEEEEECTTSSEEEEEETTSCEEEEE-----------
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCE------------EEEEEECCCCCEEEEECCCCEEEEEE-----------
T ss_conf 8999838991999986799466774389942------------99999989999999992898399999-----------
Q ss_pred CCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 54556656899630001100000010115751776542123332345689867744335899889954676656688877
Q 002446 312 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM 391 (921)
Q Consensus 312 s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~ 391 (921)
....+.+. -+ .+.. ..+. .-...|++ ..++.+..+|.
T Consensus 193 ------------------~~~~~~~~-~~--~~h~--~~v~--~l~~spd~------------------~~l~s~s~dg~ 229 (321)
T 3ow8_A 193 ------------------IATGKLLH-TL--EGHA--MPIR--SLTFSPDS------------------QLLVTASDDGY 229 (321)
T ss_dssp ------------------TTTTEEEE-EE--CCCS--SCCC--EEEECTTS------------------CEEEEECTTSC
T ss_pred ------------------CCCCCEEE-EE--CCCC--CCEE--EEEECCCC------------------CEEEEECCCCE
T ss_conf ------------------99990999-98--0258--9601--89994899------------------98999909980
Q ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99998999816889314898858999889999999996699789999589899888876678873159999741666432
Q 002446 392 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV 471 (921)
Q Consensus 392 V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~ 471 (921)
|++||+.....+..+.+|..+|.+++|+|+|++|++++.||+ |+|||+.++ ..+.++. ++. ..
T Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~--------------~~~~~~~-~h~-~~ 292 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTR--------------TCVHTFF-DHQ-DQ 292 (321)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEEC-CCS-SC
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC-EEEEECCCC--------------EEEEEEC-CCC-CC
T ss_conf 999878996325898688882689999799998999818980-999949998--------------8888983-787-73
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 899999569999999949991999846
Q 002446 472 IQDISFSDDSNWIMISSSRGTSHLFAI 498 (921)
Q Consensus 472 I~sIaFSpDs~~LAsgS~DGTVhIwdi 498 (921)
|.+++|+||+++|++++.|++|+||++
T Consensus 293 v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 293 VWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 899999899999999758980899957
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=199.67 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 566888779999899981688931489885899988999-9999996699789999589899888876678873159999
Q 002446 384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 462 (921)
Q Consensus 384 ~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdG-tlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~ 462 (921)
+.+..+|.|+|||+.+++++..+++|..+|.+++|+|+| ++||+++.||+ |+|||+..+ .+.+
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~---------------~~~~ 294 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLS---------------ELFR 294 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCC---------------EEEE
T ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCE-EEEEECCCC---------------CEEE
T ss_conf 886158718989899995989983788998899992699909999938994-999999999---------------6999
Q ss_pred EECCCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCC
Q ss_conf 74166643289999956999-9999949991999846899
Q 002446 463 LQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPL 501 (921)
Q Consensus 463 L~RG~t~a~I~sIaFSpDs~-~LAsgS~DGTVhIwdi~~~ 501 (921)
+ .||. ..|.+++|+||++ .|++++.|++|++|++.+.
T Consensus 295 ~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 295 S-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp E-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred E-CCCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 7-2889-977899991799969999937995999989998
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=197.22 Aligned_cols=258 Identities=14% Similarity=0.174 Sum_probs=189.0
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9999985899998203577787885999981-695899971589981783343047889999920898774545743467
Q 002446 84 DESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV 162 (921)
Q Consensus 84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~ 162 (921)
..+|.+.|..+.|.. ++ ..|+.|. ++.++|||+.+ +.....+..+.+.|.++.+.|.
T Consensus 51 l~gH~~~v~~~~~s~---d~----~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~-------------- 108 (340)
T 1got_B 51 LRGHLAKIYAMHWGT---DS----RLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPS-------------- 108 (340)
T ss_dssp ECCCSSCEEEEEECT---TS----SEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTT--------------
T ss_pred ECCCCCCEEEEEECC---CC----CEEEEEECCCCEEEEECCC-CCCCEEEECCCCCEEEEEECCC--------------
T ss_conf 048778368999889---99----9999981889689998999-8743376038861889999999--------------
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC----EEEEEE-CCCCEEEEEEC--C
Q ss_conf 8889999289886775445785433489988767889998789699999789991----999993-89978999973--9
Q 002446 163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS----YVHMLK-FRSPIYSVRCS--S 235 (921)
Q Consensus 163 rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~----~V~tL~-f~S~V~sI~~S--~ 235 (921)
..+|+.++. | +.|++|++.+++ ....+. +...|..+.++ .
T Consensus 109 ~~~l~s~~~----------d-----------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (340)
T 1got_B 109 GNYVACGGL----------D-----------------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155 (340)
T ss_dssp SSEEEEEET----------T-----------------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT
T ss_pred CCEEEEEEC----------C-----------------------CEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCC
T ss_conf 999999808----------9-----------------------8199997966888613677844877638999987999
Q ss_pred CEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 89999919989999889994779996188755889999877445621344724896189840038986588655445455
Q 002446 236 RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSF 315 (921)
Q Consensus 236 riLAVa~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~ 315 (921)
++++.+.++.|++||+.+.+++.++..+.. ++ .-+++.. .
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~---------------~v----~~~~~~~-------------~-------- 195 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTG---------------DV----MSLSLAP-------------D-------- 195 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS---------------CE----EEEEECT-------------T--------
T ss_pred CEEEEECCCCEEEEECCCCCEEEEECCCCC---------------CE----EEEEECC-------------C--------
T ss_conf 699998999299998999918899769998---------------66----8999989-------------9--------
Q ss_pred CCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 66568996300011000000101157517765421233323456898677443358998899546766566888779999
Q 002446 316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR 395 (921)
Q Consensus 316 ~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~Iw 395 (921)
+. .++.+..+|.|++|
T Consensus 196 ------~~----------------------------------------------------------~l~sg~~d~~v~~w 211 (340)
T 1got_B 196 ------TR----------------------------------------------------------LFVSGACDASAKLW 211 (340)
T ss_dssp ------SS----------------------------------------------------------EEEEEETTSCEEEE
T ss_pred ------CC----------------------------------------------------------EEEEEECCCCEEEE
T ss_conf ------99----------------------------------------------------------99999389939997
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf 89998168893148988589998899999999966997899995898998888766788731599997416664328999
Q 002446 396 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 475 (921)
Q Consensus 396 Dl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sI 475 (921)
|+.++.++..+.+|..+|.+++|+|+|.+|++++.||+ |+|||+... ..+..+........|.++
T Consensus 212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD--------------QELMTYSHDNIICGITSV 276 (340)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEE
T ss_pred ECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCC-EEEEECCCC--------------CEEEEECCCCCCCCEEEE
T ss_conf 78998167897487687799999499998999748981-999988999--------------189997268852416999
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf 9956999999994999199984689998402237888766
Q 002446 476 SFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 515 (921)
Q Consensus 476 aFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~ 515 (921)
+|+||+++|++++.|++++||++........+.+|.+.+.
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 316 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 9989999999977999099988413838658505778488
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=196.06 Aligned_cols=52 Identities=6% Similarity=0.005 Sum_probs=24.6
Q ss_pred CCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCEEEEEEEC
Q ss_conf 985899998203577787885999981695899971589981783343047889999920
Q 002446 88 HDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLP 147 (921)
Q Consensus 88 kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP 147 (921)
+.++..+.|.. ++ +.|+.+..+.+++||+.+ +.....+..|.+.|.++++.|
T Consensus 18 ~g~~~~~~~sp---dg----~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~sp 69 (611)
T 1nr0_A 18 RGTAVVLGNTP---AG----DKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSP 69 (611)
T ss_dssp TTCCCCCEECT---TS----SEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEECC---CC----CEEEECCCCEEEEECCCC-CCCCEEECCCCCCEEEEEECC
T ss_conf 68236976679---99----979967999799945787-242737658998659999999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=195.99 Aligned_cols=254 Identities=13% Similarity=0.231 Sum_probs=160.8
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 78334304788999992089877454574346788899992898867754457854334899887678899987896999
Q 002446 130 HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVH 209 (921)
Q Consensus 130 ~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVr 209 (921)
...+..|.++|.++.+.|. .++|+.++. | ++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~--------------~~~l~s~s~----------D-----------------------g~i~ 133 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV--------------FSVMVSASE----------D-----------------------ATIK 133 (410)
T ss_dssp SCEEECCSSCEEEEEECSS--------------SSEEEEEES----------S-----------------------SCEE
T ss_pred EEEECCCCCCEEEEEECCC--------------CCEEEEEEC----------C-----------------------CEEE
T ss_conf 0766166776899999699--------------998999938----------9-----------------------8599
Q ss_pred EEECCCCCEEEEEEC-CCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 997899919999938-9978999973--989999-919989999889994779996188755889999877445621344
Q 002446 210 FYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVG 285 (921)
Q Consensus 210 iWDLkTg~~V~tL~f-~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlg 285 (921)
+||+.+++.+++++. ...|.++.++ +++|++ +.+++|++||+.+.+++.++..|... ...+++.
T Consensus 134 vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~------------V~~v~~~ 201 (410)
T 1vyh_C 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------VSSVSIM 201 (410)
T ss_dssp EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC------------EEEEEEC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC------------EEEEEEE
T ss_conf 9989999377888166786878998599999999918981999958998266998289997------------7899996
Q ss_pred C--CEEEECCCC--CEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCC--CC
Q ss_conf 7--248961898--40038986588655445455665689963000110000001011575177654212333234--56
Q 002446 286 P--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE--FL 359 (921)
Q Consensus 286 p--RwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~--~~ 359 (921)
| ++|+.++.+ +.+|.. ...+.+. .+ .+.. ..... ..
T Consensus 202 p~~~~l~s~s~D~~i~~wd~-----------------------------~~~~~~~-~~--~~h~------~~v~~~~~~ 243 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEV-----------------------------QTGYCVK-TF--TGHR------EWVRMVRPN 243 (410)
T ss_dssp SSSSEEEEEETTSEEEEEET-----------------------------TTCCEEE-EE--ECCS------SCEEEEEEC
T ss_pred CCCCEEEEEECCCEEEEEEC-----------------------------CCCCEEE-EE--ECCC------CCEEEEEEC
T ss_conf 79999999968996999989-----------------------------9994899-99--2788------628999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC------------------
Q ss_conf 89867744335899889954676656688877999989998168893148988589998899------------------
Q 002446 360 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------------------ 421 (921)
Q Consensus 360 p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPd------------------ 421 (921)
|++ ..++.+..+|.|++||+.+..+...+..|..+|.+++|+|+
T Consensus 244 ~~g------------------~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 244 QDG------------------TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp TTS------------------SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred CCC------------------CEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCC
T ss_conf 999------------------99999918990999989897436673378745899998586554310121255555667
Q ss_pred --CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf --999999966997899995898998888766788731599997416664328999995699999999499919998468
Q 002446 422 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 499 (921)
Q Consensus 422 --GtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~ 499 (921)
|.+|++++.||+ |++||+.++ ..+..+. ++. ..|.+++|+|++++|++++.|++|+||++.
T Consensus 306 ~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 306 KPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTLV-GHD-NWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp --CCEEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred CCCCEEEEEECCCE-EEEEECCCC--------------CEEEEEE-CCC-CCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 88889999938984-999988999--------------6699997-788-858999994998999999597929999899
Q ss_pred CCCCCEEECCCCCCCC
Q ss_conf 9998402237888766
Q 002446 500 PLGGSVNFQPTDANFT 515 (921)
Q Consensus 500 ~~g~~~~l~~H~~~~~ 515 (921)
.......+.+|...+.
T Consensus 369 ~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 369 NKRCMKTLNAHEHFVT 384 (410)
T ss_dssp TSCCCEEEECCSSCEE
T ss_pred CCCEEEEECCCCCCEE
T ss_conf 9906899847778689
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=194.85 Aligned_cols=287 Identities=12% Similarity=0.128 Sum_probs=185.9
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEEECC-------CCEEEEECCCCCCEEEE---EEEECCCEEEEEEECCCCCCCC
Q ss_conf 9999858999982035777878859999816-------95899971589981783---3430478899999208987745
Q 002446 85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYR-------SGFQVWDVEEADNVHDL---VSRYDGPVSFMQMLPRPITSKR 154 (921)
Q Consensus 85 ~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~-------~GfqVWDi~~~g~~~ei---vS~~dGpVr~i~ilP~P~~~~~ 154 (921)
..|...|..++|.. || ++|+.|.. ..+++|+.........+ ...|.+.|.++++.|.
T Consensus 39 ~~H~~~V~~v~fSp---DG----~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d------ 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRR---DG----ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE------ 105 (357)
T ss_dssp -CCCSEEEEEEECS---SS----CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT------
T ss_pred CCCCCCEEEEEECC---CC----CEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCC------
T ss_conf 42107889999989---99----999998289871326869997899987140585024788798799999689------
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-----CCCCEE
Q ss_conf 457434678889999289886775445785433489988767889998789699999789991999993-----899789
Q 002446 155 SRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIY 229 (921)
Q Consensus 155 ~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~-----f~S~V~ 229 (921)
..+|+ ++. | ++|++||+.+++.+...+ +...|.
T Consensus 106 --------~~~l~-~s~----------d-----------------------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 106 --------KGILV-ASD----------S-----------------------GAVELWEILEKESLLVNKFAKYEHDDIVK 143 (357)
T ss_dssp --------TEEEE-EET----------T-----------------------SCEEEC--------CCCCEEECCCSSCEE
T ss_pred --------CCEEE-EEC----------C-----------------------CEEEEEECCCCCEEEEEEECCCCCCCCEE
T ss_conf --------98999-989----------9-----------------------98999344566404787421378889889
Q ss_pred EEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECC---CEEEECCCC--CEECCC
Q ss_conf 99973--989999-9199899998899947799961887558899998774456213447---248961898--400389
Q 002446 230 SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP---RWLAYSGSP--VVVSND 301 (921)
Q Consensus 230 sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp---RwLAyas~~--~~~s~~ 301 (921)
+|.++ +++|++ +.++.|++||+.+.+++..+..+... ...+++++ ..++.++.+ +.+|..
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~------------v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE------------VNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC------------EEEEEECCCCCCEEEEECCCCCEEEEEC
T ss_conf 9999799899999969893999989999599998277897------------8899983688722665505786388788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86588655445455665689963000110000001011575177654212333234568986774433589988995467
Q 002446 302 GRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNG 381 (921)
Q Consensus 302 GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g 381 (921)
.. .+.+. ... .......+....-.+.. ..
T Consensus 212 ~~-----------------------------~~~~~----------------~~~--~~~~~~~v~~v~~sp~~----~~ 240 (357)
T 4g56_B 212 RK-----------------------------PKPAT----------------RID--FCASDTIPTSVTWHPEK----DD 240 (357)
T ss_dssp TS-----------------------------SSCBC----------------BCC--CTTCCSCEEEEEECTTS----TT
T ss_pred CC-----------------------------CCEEE----------------EEE--ECCCCCCCCCHHHHHCC----CC
T ss_conf 99-----------------------------96401----------------233--00233444211112135----30
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf 66566888779999899981688931489885899988999-99999966997899995898998888766788731599
Q 002446 382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 460 (921)
Q Consensus 382 ~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdG-tlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l 460 (921)
.++.+..++.|++||+.+++++..+.+|..+|.+++|+|+| ++||+++.||+ |+|||+.++ ..+
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~--------------~~~ 305 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFS--------------EVF 305 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSC--------------EEE
T ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEECCCE-EEEEECCCC--------------CEE
T ss_conf 59982135420689899995828993553138779976899989999958997-999989999--------------586
Q ss_pred EEEECCCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf 9974166643289999956-9999999949991999846899984022
Q 002446 461 YRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF 507 (921)
Q Consensus 461 ~~L~RG~t~a~I~sIaFSp-Ds~~LAsgS~DGTVhIwdi~~~g~~~~l 507 (921)
..+ ++. ..|++++|+| |+++||+++.||+|++|++...+....+
T Consensus 306 ~~~--~H~-~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 306 RDL--SHR-DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp EEC--CCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECC--------
T ss_pred EEC--CCC-CCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 978--899-988999995899999999918995999977999843323
No 9
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=1.00 E-value=1 Score=190.98 Aligned_cols=217 Identities=19% Similarity=0.186 Sum_probs=132.2
Q ss_pred CEEEEEECCCCC-E---EEEEEC------CCCEEEEEEC--CCEEEEE---ECCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 699999789991-9---999938------9978999973--9899999---19989999889994779996188755889
Q 002446 206 TVVHFYSLRSQS-Y---VHMLKF------RSPIYSVRCS--SRVVAIC---QAAQVHCFDAATLEIEYAILTNPIVMGHP 270 (921)
Q Consensus 206 ~tVriWDLkTg~-~---V~tL~f------~S~V~sI~~S--~riLAVa---~~~~I~IfDl~T~~~l~tl~t~p~~~g~p 270 (921)
..+|+|++.+.. . +....+ ...+..|+|+ +++++++ .++.|++||+.++++++++....
T Consensus 104 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~------ 177 (365)
T 4h5i_A 104 KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG------ 177 (365)
T ss_dssp CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS------
T ss_pred CCEEEEEECCCCCEEEEEEEECEEECCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC------
T ss_conf 91899995388852777661020426886427899999289998999998999989996899983989957999------
Q ss_pred CCCCCCCCCCCEEECC--CEEEECCCC-CEECC--CCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCC
Q ss_conf 9998774456213447--248961898-40038--986588655445455665689963000110000001011575177
Q 002446 271 SAGGIGIGYGPLAVGP--RWLAYSGSP-VVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 345 (921)
Q Consensus 271 ~~~~~~~~~~piAlgp--RwLAyas~~-~~~s~--~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd 345 (921)
....++++| ++||+++.. ...+. .+. .+.. ....+.
T Consensus 178 -------~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~-------------------------------~~~~-~~~~~~ 218 (365)
T 4h5i_A 178 -------EVKDLHFSTDGKVVAYITGSSLEVISTVTGS-------------------------------CIAR-KTDFDK 218 (365)
T ss_dssp -------CCCEEEECTTSSEEEEECSSCEEEEETTTCC-------------------------------EEEE-ECCCCT
T ss_pred -------CEEEEEECCCCCEEEECCCEEEEEEEECCCC-------------------------------CEEE-EECCCC
T ss_conf -------5688897148854784032058999952685-------------------------------0112-441788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE----EEEECCCCCCEEEEEECCC
Q ss_conf 654212333234568986774433589988995467665668887799998999816----8893148988589998899
Q 002446 346 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDPS 421 (921)
Q Consensus 346 ~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~----ia~l~aH~~pIsaLaFSPd 421 (921)
. ..++. -...|++..-. ++ ..+......+.+||+..... ...+..|..+|++++|+||
T Consensus 219 ~--~~v~~--v~fspdg~~l~-~~-------------s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 219 N--WSLSK--INFIADDTVLI-AA-------------SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp T--EEEEE--EEEEETTEEEE-EE-------------EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred C--CCEEE--EEECCCCCEEE-EE-------------ECCCCCEEEEEECCCCCCEECCEEEEEECCCCCCEEEEEECCC
T ss_conf 9--98899--99948999789-99-------------6588630699613444210000122442388887676798898
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99999996699789999589899888876678873159999741666432899999569999999949991999846899
Q 002446 422 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 501 (921)
Q Consensus 422 GtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~ 501 (921)
|++||+++.||+ |+|||+.++ ..+.++.+||.. .|++++||||+++||++|.|+||+||+|.+.
T Consensus 281 g~~lasgs~D~~-V~iwd~~~~--------------~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 281 GELAVLASNDNS-IALVKLKDL--------------SMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEETTSC-EEEEETTTT--------------EEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEECCCCE-EEEEECCCC--------------CEEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 773599848998-999999999--------------497886374459-8799999899999999928994999995898
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=190.52 Aligned_cols=254 Identities=11% Similarity=0.104 Sum_probs=180.6
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCC----------CCCEEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf 9998589999820357778788599998169589997158----------998178334304788999992089877454
Q 002446 86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEE----------ADNVHDLVSRYDGPVSFMQMLPRPITSKRS 155 (921)
Q Consensus 86 ~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~----------~g~~~eivS~~dGpVr~i~ilP~P~~~~~~ 155 (921)
.+...|..++|.. || ++|+.+.+...++||... ..........++.+|.++.+.|+
T Consensus 28 ~~~~~v~~~~fs~---dG----~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d------- 93 (344)
T 4gqb_B 28 CMERQLEAARYRS---DG----ALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE------- 93 (344)
T ss_dssp SCCSEEEEEEECT---TS----CEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-------
T ss_pred CCCCCEEEEEECC---CC----CEEEEEECCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECC-------
T ss_conf 5558888999989---99----999999089568762305650365556776546666036798789999299-------
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-----CCCCEEE
Q ss_conf 57434678889999289886775445785433489988767889998789699999789991999993-----8997899
Q 002446 156 RDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYS 230 (921)
Q Consensus 156 ~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~-----f~S~V~s 230 (921)
..|+.++. | ++|++||+.+++.+..++ +...|.+
T Consensus 94 --------~~l~~~s~----------d-----------------------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 94 --------RGILVASD----------S-----------------------GAVELWELDENETLIVSKFCKYEHDDIVST 132 (344)
T ss_dssp --------TEEEEEET----------T-----------------------SEEEEEEECTTSSCEEEEEEEECCSSCEEE
T ss_pred --------CEEEEEEC----------C-----------------------CEEEEEECCCCCCEEEEECCCCCCCCCEEE
T ss_conf --------82999989----------7-----------------------989999653887435860134678997899
Q ss_pred EEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCC
Q ss_conf 9973--989999-9199899998899947799961887558899998774456213447248961898400389865886
Q 002446 231 VRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQ 307 (921)
Q Consensus 231 I~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq 307 (921)
|.|+ +++|+. +.++.|++||+.+.+++.++..|.. ++ ..+++.. .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~---------------~V----~~~~~~~-------------~ 180 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA---------------QV----TCVAASP-------------H 180 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS---------------CE----EEEEECS-------------S
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC---------------CE----EEEEECC-------------C
T ss_conf 99989989999994989399999999969999757688---------------55----7888658-------------9
Q ss_pred CCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55445455665689963000110000001011575177654212333234568986774433589988995467665668
Q 002446 308 HLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDAD 387 (921)
Q Consensus 308 ~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~ 387 (921)
+. ..++++.
T Consensus 181 --------------~~---------------------------------------------------------~~l~s~s 189 (344)
T 4gqb_B 181 --------------KD---------------------------------------------------------SVFLSCS 189 (344)
T ss_dssp --------------CT---------------------------------------------------------TEEEEEE
T ss_pred --------------CC---------------------------------------------------------CCEEEEC
T ss_conf --------------99---------------------------------------------------------7401103
Q ss_pred CCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECC-CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 88779999899981688931--4898858999889-99999999669978999958989988887667887315999974
Q 002446 388 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 464 (921)
Q Consensus 388 ~~G~V~IwDl~s~~~ia~l~--aH~~pIsaLaFSP-dGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~ 464 (921)
.+|.|++||+.+++++..+. .|...+.+++|+| ++.+|++++.||+ |+|||+.++ ..+.++.
T Consensus 190 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~--------------~~~~~~~ 254 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKST--------------SCVLSSA 254 (344)
T ss_dssp TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC----------------CCEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCEEECCCEEEEECCCCCCCEEEECCCCC-EEEEECCCC--------------CEEEEEC
T ss_conf 4435510234455200111010000121235661799960588615871-898989999--------------5989983
Q ss_pred CCCCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf 16664328999995699-9999994999199984689998402237888766
Q 002446 465 RGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 515 (921)
Q Consensus 465 RG~t~a~I~sIaFSpDs-~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~ 515 (921)
++. ..|.+++|+||+ ++||+++.|++|+|||+... ....+++|.+.+.
T Consensus 255 -~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~~~~~~H~~~V~ 303 (344)
T 4gqb_B 255 -VHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-ELFRSQAHRDFVR 303 (344)
T ss_dssp -CCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-EEEEECCCSSCEE
T ss_pred -CCC-CCEEEEEECCCCCEEEEEEECCCEEEEEECCCC-CEEEECCCCCCEE
T ss_conf -788-998899992699909999938994999999999-6999728899778
Done!