BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002447
(921 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 20/232 (8%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQ--LPSWVSSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV NE + GS Q + +G+D F+TA D
Sbjct: 105 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 165 PNAKLYINDYNLDSASYPKT--QAIVNRVKKWRAAGVPIDGIGSQTHLSAGQGASVLQAL 222
Query: 784 DNLGILGLP-IWFTELDV--SSINEYVRGEDLEVMLREAFAHPAVEGIMLWG 832
L G P + TELDV +S +YV ++ + GI +WG
Sbjct: 223 PLLASAGTPEVAITELDVAGASSTDYVN------VVNACLNVSSCVGITVWG 268
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQ--LPSWVVSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQLD 723
++N +T ++ RY GK R +DV NE L + + + +G+D F+TA D
Sbjct: 105 TNVMKNHITTIMTRYIGKIRAWDVVNEAFNEDGSLRQTVFNNVIGEDYIPIAFRTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++S ++ + + G P+ GIG Q H+ + G + +AL
Sbjct: 165 PNAKLYINDYNLDSASKPKTS--AIVKRVKKWRAAGVPIDGIGSQTHLSAGQGASIDAAL 222
Query: 784 DNLGILGLP-IWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWG 832
NL G P + TELD++ D ++ + GI +WG
Sbjct: 223 PNLASAGTPEVAITELDIAG----ATSTDYVDVVNACLDVDSCIGITVWG 268
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 20/253 (7%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQ--LPSWVSSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV NE + GS Q + +G+D F+TA D
Sbjct: 105 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 165 PNAKLYINDYNLDSASYPKT--QAIVNRVKKWRAAGVPIDGIGSQTHLSAGQGAGVLQAL 222
Query: 784 DNLGILGLP-IWFTELDV--SSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSR 840
L G P + TELDV +S +YV ++ + GI +WG + R
Sbjct: 223 PLLASAGTPEVAITELDVAGASPTDYVN------VVNACLNVSSCVGITVWGVADPDSWR 276
Query: 841 DSAHLVNAEGDIN 853
S + +G+ N
Sbjct: 277 ASTTPLLFDGNFN 289
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 23/276 (8%)
Query: 582 IGSCINRSQIDNED--FVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLN 639
IG+C+N +N D + + F+ V NE+K+ + +Q F++ D +L
Sbjct: 39 IGTCVNYPFYNNSDPTYNSILQREFSMVVCENEMKFDALQPRQNVFDFSKGDQLLAFAER 98
Query: 640 HNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEM-- 697
+ +Q RGH + W Q + N++ L+ ++N +T ++ YKGK +DV NE
Sbjct: 99 NGMQMRGHTLIWHNQNPSWLTNGNWNRDSLLAVMKNHITTVMTHYKGKIVEWDVANECMD 158
Query: 698 -----LHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHI 752
L S +++ +G+D Y F+ A + D A LF NDY++ED P+S+ I
Sbjct: 159 DSGNGLRSSIWRNVIGQDYLDYAFRYAREADPDALLFYNDYNIED-LGPKSN--AVFNMI 215
Query: 753 LNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDN----LGILGLPIWFTELDV-------S 801
+++E+G P+ G+G Q H + + P +++D +G+ + FTE+D+
Sbjct: 216 KSMKERGVPIDGVGFQCHFINGMSPEYLASIDQNIKRYAEIGVIVSFTEIDIRIPQSENP 275
Query: 802 SINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELF 837
+ V+ + + +++ A+P ++WGF + +
Sbjct: 276 ATAFQVQANNYKELMKICLANPNCNTFVMWGFTDKY 311
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 20/253 (7%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQ--LPSWVSSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV NE + GS Q + +G+D F+TA D
Sbjct: 105 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 165 PNAKLYINDYNLDSASYPKT--QAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQAL 222
Query: 784 DNLGILGLP-IWFTELDV--SSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSR 840
L G P + TELDV +S +YV ++ + GI +WG + R
Sbjct: 223 PLLASAGTPEVAITELDVAGASPTDYVN------VVNACLNVQSCVGITVWGVADPDSWR 276
Query: 841 DSAHLVNAEGDIN 853
S + +G+ N
Sbjct: 277 ASTTPLLFDGNFN 289
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 20/253 (7%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHSQ--LPSWVSSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV NE + GS Q + +G+D F+TA D
Sbjct: 105 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 165 PNAKLYINDYNLDSASYPKT--QAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQAL 222
Query: 784 DNLGILGLP-IWFTELDV--SSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSR 840
L G P + TELDV +S +YV ++ + GI +WG + R
Sbjct: 223 PLLASAGTPEVAITELDVAGASPTDYVN------VVNACLNVQSCVGITVWGVADPDSWR 276
Query: 841 DSAHLVNAEGDIN 853
S + +G+ N
Sbjct: 277 ASTTPLLFDGNFN 289
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 16/254 (6%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLM 670
NE+KW ES + +F++ AD ++ + ++ RGH + W Q + W+ L DL
Sbjct: 44 NEMKWDAVESSRNSFSFSAADRIVSHAQSKGMKVRGHTLVWHSQ--LPGWVSPLAATDLR 101
Query: 671 TAVQNRLTGLLARYKGKFRHYDVNNEMLH--------GSFYQDKLGKDIRAYMFKTAHQL 722
+A+ N +T ++ YKGK +DV NE S +QDKLG F+TA +
Sbjct: 102 SAMNNHITQVMTHYKGKIHSWDVVNEAFQDGGSGARRSSPFQDKLGNGFIEEAFRTARTV 161
Query: 723 DLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVC 780
D A L NDY+ DG + +S+ E + + +++G P+ +G Q H +SPV
Sbjct: 162 DADAKLCYNDYNT-DGQNAKSNA--VYEMVKDFKQRGVPIDCVGFQSHFNSNSPVPSDFQ 218
Query: 781 SALDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSR 840
+ L LG+ + TELD+ + + ++ A GI +WG + + R
Sbjct: 219 ANLQRFADLGVDVQITELDIEGSGS-AQAANYTKVVNACLAVTRCTGITVWGVTDKYSWR 277
Query: 841 DSAHLVNAEGDINE 854
+ +GD N+
Sbjct: 278 SGGTPLLFDGDYNK 291
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 121/263 (46%), Gaps = 22/263 (8%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G+C +++ + N F N +KW E QGNF + AD ++D HN
Sbjct: 17 FGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHN 76
Query: 642 IQTRGHCIFWEVQATVQPWIQSL-NKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLH- 699
+ RGH + W Q + W+ S+ + N L + + N + ++ RYKGK H+DV NE+ +
Sbjct: 77 KKVRGHTLVWHSQ--LPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNE 134
Query: 700 -GSF----YQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN 754
G+F + + LG+D F+TA D A L++NDY+++ ++ + ++
Sbjct: 135 DGTFRNSVFYNLLGEDFVRIAFETARAADPDAKLYINDYNLDSASYAKT--QAMASYVKK 192
Query: 755 LQEQGAPVGGIGIQGHIDSP-----VGPIVCSALDNLGILGLPIWFTELDVSSINEYVRG 809
+G P+ GIG Q H S S+L N G+ + I TELD++
Sbjct: 193 WLAEGVPIDGIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAI--TELDIAG----AAS 246
Query: 810 EDLEVMLREAFAHPAVEGIMLWG 832
D +L GI +WG
Sbjct: 247 SDYLNLLNACLNEQKCVGITVWG 269
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 135/297 (45%), Gaps = 21/297 (7%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
Q+ G+ I ++ + + ++ FN NE+K TE Q+G FN+ D + +
Sbjct: 11 QSGRYFGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNW 70
Query: 637 CLNHNIQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNN 695
+ + Q RGH + W Q QP W+QSL+ + L A+ + + G++ YKGK +DV N
Sbjct: 71 AVQNGKQVRGHTLAWHSQ---QPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVN 127
Query: 696 EMLH--GSFYQ-----DKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKY 748
E GS + + G D F+TA D +A L NDY++E+ ++ +
Sbjct: 128 EAFSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKT--QGV 185
Query: 749 IEHILNLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSSINEY 806
+ + +++G P+ +G Q H + SP + L N LG+ + TELD+ +
Sbjct: 186 YNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSS 245
Query: 807 VRGEDLEVMLREAFAHPAVEGIMLWGFWEL--FMSRDSAHLVNAEGDINEAGKKFLN 861
+ + A GI +WG + + S D+ L N +G A LN
Sbjct: 246 T----YAAVTNDCLAVSRCLGITVWGVRDTDSWRSGDTPLLFNGDGSKKAAYTAVLN 298
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 21/297 (7%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
Q+ G+ I ++ + + ++ FN NE+K TE Q+G FN+ D + +
Sbjct: 11 QSGRYFGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNW 70
Query: 637 CLNHNIQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNN 695
+ + Q RGH + W + QP W+QSL+ + L A+ + + G++ YKGK +DV N
Sbjct: 71 AVQNGKQVRGHTLAWH---SAQPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVN 127
Query: 696 EMLH--GSFYQ-----DKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKY 748
E GS + + G D F+TA D +A L NDY++E+ ++ +
Sbjct: 128 EAFSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKT--QGV 185
Query: 749 IEHILNLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSSINEY 806
+ + +++G P+ +G Q H + SP + L N LG+ + TELD+ +
Sbjct: 186 YNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASS- 244
Query: 807 VRGEDLEVMLREAFAHPAVEGIMLWGFWEL--FMSRDSAHLVNAEGDINEAGKKFLN 861
+ + A GI +WG + + S D+ L N +G A LN
Sbjct: 245 ---STYAAVTNDCLAVSRCLGITVWGVRDTDSWASGDTPLLFNGDGSKKAAYTAVLN 298
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 19/261 (7%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G+ I ++ + + + FN NE+K TE Q+G FN+ AD + + + +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 642 IQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML-- 698
Q RGH + W Q QP W+QSL+ + L A+ + + G++A YKGK +DV NE
Sbjct: 76 KQVRGHTLAWHSQ---QPGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFAD 132
Query: 699 --HGSFYQDKL---GKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHIL 753
G+ L G D F+TA D SA L NDY+VE+ ++ + +
Sbjct: 133 GSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKT--QAMYNMVR 190
Query: 754 NLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGED 811
+ +++G P+ +G Q H + SP + L N LG+ + TELD+ +
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI----QGAPAST 246
Query: 812 LEVMLREAFAHPAVEGIMLWG 832
+ + A GI +WG
Sbjct: 247 YANVTNDCLAVSRCLGITVWG 267
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 19/261 (7%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G+ I ++ + + + FN NE+K TE Q+G FN+ AD + + + +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 642 IQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML-- 698
Q RGH + W Q QP W+QSL+ + L A+ + + G++A YKGK +DV NE
Sbjct: 76 KQVRGHTLAWHSQ---QPGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFAD 132
Query: 699 --HGSFYQDKL---GKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHIL 753
G+ L G D F+TA D SA L NDY+VE+ ++ + +
Sbjct: 133 GSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKT--QAMYNMVR 190
Query: 754 NLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGED 811
+ +++G P+ +G Q H + SP + L N LG+ + TELD+ +
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI----QGAPAST 246
Query: 812 LEVMLREAFAHPAVEGIMLWG 832
+ + A GI +WG
Sbjct: 247 YANVTNDCLAVSRCLGITVWG 267
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 19/261 (7%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G+ I ++ + + + FN NE+K TE Q+G FN+ AD + + + +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 642 IQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML-- 698
Q RGH + W Q QP W+QSL+ L A+ + + G++A YKGK +DV NE
Sbjct: 76 KQVRGHTLAWHSQ---QPGWMQSLSGRPLRQAMIDHINGVMAHYKGKIVQWDVVNEAFAD 132
Query: 699 --HGSFYQDKL---GKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHIL 753
G+ L G D F+TA D SA L NDY+VE+ ++ + +
Sbjct: 133 GSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKT--QAMYNMVR 190
Query: 754 NLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGED 811
+ +++G P+ +G Q H + SP + L N LG+ + TELD+ +
Sbjct: 191 DFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDI----QGAPAST 246
Query: 812 LEVMLREAFAHPAVEGIMLWG 832
+ + A GI +WG
Sbjct: 247 YANVTNDCLAVSRCLGITVWG 267
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + RGH + + W+ S+ +KN L
Sbjct: 48 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVGHFY--LPSWVSSITDKNTL 105
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV NE + GS Q + +G+D F+TA D
Sbjct: 106 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 165
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 166 PNAKLYINDYNLDSASYPKT--QAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQAL 223
Query: 784 DNLGILGLP-IWFTELDV--SSINEYV 807
L G P + TEL+V +S +YV
Sbjct: 224 PLLASAGTPEVAITELNVAGASPTDYV 250
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 29/301 (9%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
Q+ G+ I ++ + + ++ FN NE+K TE Q+G FN+ D + +
Sbjct: 11 QSGRYFGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNW 70
Query: 637 CLNHNIQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNN 695
+ + Q RGH + W Q QP W+QSL+ + L A+ + + G++ YKGK +DV
Sbjct: 71 AVQNGKQVRGHTLAWHSQ---QPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDV-- 125
Query: 696 EMLHGSFYQD-----------KLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSS 744
+ +F D + G D F+TA D +A L NDY++E+ ++
Sbjct: 126 --VSHAFSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKT- 182
Query: 745 PEKYIEHILNLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGILGLPIWFTELDVSS 802
+ + + +++G P+ +G Q H + SP + L N LG+ + TELD+
Sbjct: 183 -QGVYNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQG 241
Query: 803 INEYVRGEDLEVMLREAFAHPAVEGIMLWGFWEL--FMSRDSAHLVNAEGDINEAGKKFL 860
+ + + A GI +WG + + S D+ L N +G A L
Sbjct: 242 ASS----STYAAVTNDCLAVSRCLGITVWGVRDTDSWRSGDTPLLFNGDGSKKAAYTAVL 297
Query: 861 N 861
N
Sbjct: 298 N 298
>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Xylopentaose
pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With 4-O-Methyl Glucuronic Acid
pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha-1,3 Linked To
Xylobiose
pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha 1,3 Linked To
Xylotriose
Length = 378
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 18/241 (7%)
Query: 577 QNSFPIGSCINRSQID--NEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
+++F IG+ +N + +E K FN N +KW QG +N+KDAD +
Sbjct: 32 KDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMKWGVLRDAQGQWNWKDADAFV 91
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKNDLMTAVQNRLTGLLARYKGKFRH 690
HN+ GH + W Q + + + ++K L ++ +T L RYKGK
Sbjct: 92 AFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAALQKKMEEHITTLAGRYKGKLAA 151
Query: 691 YDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSS 744
+DV NE + S + +G D F A+++D A L NDY++E
Sbjct: 152 WDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDPKAHLMYNDYNIER----TGK 207
Query: 745 PEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVSS 802
E +E I LQ++G P+ G+GIQGH ID+P + ++ LGL + FT LDV
Sbjct: 208 REATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRVHFTSLDVDV 267
Query: 803 I 803
+
Sbjct: 268 L 268
>pdb|2CNC|A Chain A, Family 10 Xylanase
Length = 386
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 18/241 (7%)
Query: 577 QNSFPIGSCINRSQID--NEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
+++F IG+ +N + +E K FN N +KW QG +N+KDAD +
Sbjct: 41 KDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMKWGVLRDAQGQWNWKDADAFV 100
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKNDLMTAVQNRLTGLLARYKGKFRH 690
HN+ GH + W Q + + + ++K L ++ +T L RYKGK
Sbjct: 101 AFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAALQKKMEEHITTLAGRYKGKLAA 160
Query: 691 YDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSS 744
+DV NE + S + +G D F A+++D A L NDY++E
Sbjct: 161 WDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDPKAHLMYNDYNIE----RTGK 216
Query: 745 PEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVSS 802
E +E I LQ++G P+ G+GIQGH ID+P + ++ LGL + FT LDV
Sbjct: 217 REATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRVHFTSLDVDV 276
Query: 803 I 803
+
Sbjct: 277 L 277
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 24/251 (9%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLC 637
N F IG+ +N I+ + + + N N +K+ + ++G F +++AD ++D
Sbjct: 14 NDFRIGAAVNPVTIEMQK--QLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 638 LNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTGLLARYKGKFRHY 691
+H + RGH + W Q W+ ++++ L+ ++ ++ ++ RYKGK +
Sbjct: 72 CSHRMAVRGHTLVWHNQTP--DWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 692 DV--------NNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743
DV NE+L S ++ +G D F A++ D A LF NDY + C P
Sbjct: 130 DVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDY---NECFPEK 186
Query: 744 SPEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVS 801
EK + +L+++G P+ GIG+Q H + P + +A++ LG+ + TELDVS
Sbjct: 187 R-EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELDVS 245
Query: 802 SINEYVRGEDL 812
+ R DL
Sbjct: 246 MFEFHDRRTDL 256
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 20/253 (7%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE +G F + +D +++ ++ RGH + W Q + W+ S+ +KN L
Sbjct: 48 NSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQ--LPGWVSSITDKNTL 105
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQLD 723
++ ++N +T ++ RYKGK +DV NE+ L S + + +G+D F+TA +D
Sbjct: 106 ISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLRNSVFYNVIGEDYVRIAFETARSVD 165
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++NDY+++ S + H+ G P+ GIG Q H+ + G V AL
Sbjct: 166 PNAKLYINDYNLDSAG--YSKVNGMVSHVKKWLAAGIPIDGIGSQTHLGAGAGSAVAGAL 223
Query: 784 DNLGILGLP-IWFTELDV--SSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSR 840
+ L G I TELD+ +S +YV ++ GI +WG + R
Sbjct: 224 NALASAGTKEIAITELDIAGASSTDYVN------VVNACLNQAKCVGITVWGVADPDSWR 277
Query: 841 DSAHLVNAEGDIN 853
S+ + +G+ N
Sbjct: 278 SSSSPLLFDGNYN 290
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 24/251 (9%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLC 637
N F IG+ +N I+ + + + N N +K+ + ++G F +++AD ++D
Sbjct: 14 NDFRIGAAVNPVTIEMQK--QLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 638 LNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTGLLARYKGKFRHY 691
+H + RGH + W Q W+ ++++ L+ ++ ++ ++ RYKGK +
Sbjct: 72 CSHRMAVRGHTLVWHNQTP--DWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 692 DVNN--------EMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743
DV N E+L S ++ +G D F A++ D A LF NDY + C P
Sbjct: 130 DVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDY---NECFPEK 186
Query: 744 SPEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVS 801
EK + +L+++G P+ GIG+Q H + P + +A++ LG+ + TELDVS
Sbjct: 187 R-EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELDVS 245
Query: 802 SINEYVRGEDL 812
+ R DL
Sbjct: 246 MFEFHDRRTDL 256
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 24/251 (9%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLC 637
N F IG+ +N I+ + + + N N +K+ + ++G F +++AD ++D
Sbjct: 14 NDFRIGAAVNPVTIEMQK--QLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 638 LNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTGLLARYKGKFRHY 691
+H + RGH + W Q W+ ++++ L+ ++ ++ ++ RYKGK +
Sbjct: 72 CSHRMAVRGHTLVWHNQTP--DWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 692 DV--------NNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743
DV NE+L S ++ +G D F A++ D A LF NDY + C P
Sbjct: 130 DVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDY---NECFPEK 186
Query: 744 SPEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVS 801
EK + +L+++G P+ GIG+Q H + P + +A++ LG+ + T LDVS
Sbjct: 187 R-EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALDVS 245
Query: 802 SINEYVRGEDL 812
+ R DL
Sbjct: 246 MFEFHDRRTDL 256
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NKNDL 669
N +KW TE QGNFN+ AD +++ + G + W Q + W+ S+ +KN L
Sbjct: 47 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIGGGMLVWHSQ--LPSWVSSITDKNTL 104
Query: 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLH--GSFYQ----DKLGKDIRAYMFKTAHQLD 723
++N +T L+ RYKGK R +DV E + GS Q + +G+D F+TA D
Sbjct: 105 TNVMKNHITTLMTRYKGKIRAWDVVGEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 164
Query: 724 LSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783
+A L++ DY+++ P++ + + + + G P+ GIG Q H+ + G V AL
Sbjct: 165 PNAKLYIMDYNLDSASYPKT--QAIVNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQAL 222
Query: 784 DNLGILGLP-IWFTELDV--SSINEYV 807
L G P + LDV +S +YV
Sbjct: 223 PLLASAGTPEVSILMLDVAGASPTDYV 249
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 24/251 (9%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLC 637
N F IG+ +N I+ + + + N N +K+ + ++G F +++AD ++D
Sbjct: 14 NDFRIGAAVNPVTIEMQK--QLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 638 LNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTGLLARYKGKFRHY 691
+H + RGH + W Q W+ ++++ L+ ++ ++ ++ RYKGK +
Sbjct: 72 CSHRMAVRGHTLVWHNQTP--DWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 692 DVNN--------EMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743
DV N E+L S ++ +G D F A++ D A LF NDY + C P
Sbjct: 130 DVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDY---NECFPEK 186
Query: 744 SPEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVS 801
EK + +L+++G P+ GIG+Q H + P + +A++ LG+ + T LDVS
Sbjct: 187 R-EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALDVS 245
Query: 802 SINEYVRGEDL 812
+ R DL
Sbjct: 246 MFEFHDRRTDL 256
>pdb|1V6Y|A Chain A, Crystal Structure Of Chimeric Xylanase Between
Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas
Fimi Cex
Length = 324
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 127/273 (46%), Gaps = 24/273 (8%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
Q+ G+ I ++ + + ++ FN NE+K TE Q+G FN+ D + +
Sbjct: 11 QSGRYFGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNW 70
Query: 637 CLNHNIQTRGHCIFWEVQATVQP-WIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNN 695
+ + Q RGH + W Q QP W+QSL+ + L A+ + + G++ YKGK +DV N
Sbjct: 71 AVQNGKQVRGHTLAWHSQ---QPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVN 127
Query: 696 EMLH--GSFYQ-----DKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKY 748
E GS + + G D F+TA D +A L NDY++E+ ++ +
Sbjct: 128 EAFSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKT--QGV 185
Query: 749 IEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNL---GILGLPIWFTELDV----- 800
+ + +++G P+ +G Q H+ VG + NL LG+ + TELD+
Sbjct: 186 YNMVRDFKQRGVPIDCVGFQSHL--IVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTP 243
Query: 801 -SSINEYVRGEDLEVMLREAFAHPAVEGIMLWG 832
+ + D + +++ +G+ +WG
Sbjct: 244 SDATKLATQAADYKKVVQACMQVTRCQGVTVWG 276
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLC 637
NSF IG+ ++ + E +F K++N N++K+ ++ + ++ AD+++D
Sbjct: 13 NSFKIGAAVHTRMLQTEG--EFIAKHYNSVTAENQMKFEEVHPREHEYTFEAADEIVDFA 70
Query: 638 LNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTGLLARYKGKFRHY 691
+ I RGH + W Q W+ + ++ +++ ++ + ++ RYK + +
Sbjct: 71 VARGIGVRGHTLVWHNQTPA--WMFEDASGGTASREMMLSRLKQHIDTVVGRYKDQIYAW 128
Query: 692 DVNNE--------MLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743
DV NE ++ + + LG+D F AH+ D +A LF NDY + DP
Sbjct: 129 DVVNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDY---NETDP-V 184
Query: 744 SPEKYIEHILNLQEQGAPVGGIGIQGH--IDSPVGPIVCSALDNLGILGLPIWFTELDVS 801
EK + +L +QGAPV GIG+QGH I P + A++ L + + TELD+S
Sbjct: 185 KREKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTELDLS 244
Query: 802 SINEYVRGEDLEVMLREAFAHPA 824
R ED L E A A
Sbjct: 245 VF----RHEDQRTDLTEPTAEMA 263
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 123/260 (47%), Gaps = 24/260 (9%)
Query: 592 DNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFW 651
D E +++ + FN N++KW ++ +N+ A+ ++ +++ GH + W
Sbjct: 30 DAEKYMEVARREFNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVW 89
Query: 652 EVQATVQPWI--QSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML------HGSFY 703
Q + WI + K +L+ +++ + +++ +KG+ + +DV NE + S +
Sbjct: 90 HNQ--LPGWITGREWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVW 147
Query: 704 QDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN-LQEQGAPV 762
+G + F+ A + D A L NDY +E+ ++ ++ +++ L+E+G PV
Sbjct: 148 YKTIGPEYIEKAFRWAKEADPDAILIYNDYSIEEI----NAKSNFVYNMIKELKEKGVPV 203
Query: 763 GGIGIQGHIDSP--VGPIVCSALDNLGILGLPIWFTELDV----SSINEYVRGEDLEV-- 814
GIG Q HID L+ LGL I+ TE+DV S EY + EV
Sbjct: 204 DGIGFQMHIDYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEEYYLKKQAEVCA 263
Query: 815 -MLREAFAHPAVEGIMLWGF 833
+ +PAV+ I WGF
Sbjct: 264 KIFDICLDNPAVKAIQFWGF 283
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 580 FPIGSCINRSQ------IDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
FPIG ++ + + N K+FN GN +K + + +GNFN+ +AD
Sbjct: 175 FPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAF 234
Query: 634 LDLCLNHNIQTRGHCIFWEVQATVQPWIQSL--NKNDLMTAVQNRLTGLLARY--KGKFR 689
+D +N+ GH + W V ++++ + D + A+ +T ++ Y KG
Sbjct: 235 VDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLV 294
Query: 690 HYDVNNEMLHGSFYQDKLGKDIRAYM------------FKTAHQLDLSATLFVNDYHVED 737
+DV NE + + + D Y+ F+TA D + L+ NDY++E
Sbjct: 295 SWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQ 354
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILGLPIWF 795
+ K ++ + + Q + P+ G+G Q H+ + P + +A+ + LGL +
Sbjct: 355 N---NAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLVKI 411
Query: 796 TELDVS 801
TELDV+
Sbjct: 412 TELDVA 417
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 28/252 (11%)
Query: 574 KQTQNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
++ +N F IG+ + Q+ NE V+ ++FN V N +K + ++G FN++ AD +
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 634 LDLCLNHNIQTRGHCIFWEVQA---------------TVQPWIQSLNKNDLMTAVQNRLT 678
+ + + R H + W Q P + NK L+ ++ +
Sbjct: 82 VKFAKANGMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIK 141
Query: 679 GLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATLFVN 731
++ RYK +++DV NE+ L S + G D F+ A + + L++N
Sbjct: 142 TIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMN 201
Query: 732 DYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHID--SPVGPIVCSALDNLGIL 789
DY+ E +P+ + + L+E+G P+ GIG Q HI +P + ++ L
Sbjct: 202 DYNTE--VEPKRT--ALYNLVKQLKEEGVPIDGIGHQSHIQIGAPSEAEIEKTINMFAAL 257
Query: 790 GLPIWFTELDVS 801
GL TELDVS
Sbjct: 258 GLDNQITELDVS 269
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 122/260 (46%), Gaps = 24/260 (9%)
Query: 592 DNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFW 651
D E +++ + FN N++KW ++ +N+ A+ ++ +N+ GH + W
Sbjct: 46 DEEKYMEVARREFNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENNMIVHGHTLVW 105
Query: 652 EVQATVQPWI--QSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML------HGSFY 703
Q + WI + K +L+ +++ + +++ +KG+ + +DV NE + S +
Sbjct: 106 HNQ--LPGWITGREWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVW 163
Query: 704 QDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN-LQEQGAPV 762
+G + F+ + D A L NDY +E+ ++ ++ +++ L+E+G PV
Sbjct: 164 YKTIGPEYIEKAFRWTKEADPDAILIYNDYSIEE----INAKSNFVYNMIKELKEKGVPV 219
Query: 763 GGIGIQGHIDSP--VGPIVCSALDNLGILGLPIWFTELDV----SSINEYVRGEDLEV-- 814
GIG Q HID L+ LGL I+ TE+DV S +Y + E+
Sbjct: 220 DGIGFQMHIDYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEDYYLKKQAEICA 279
Query: 815 -MLREAFAHPAVEGIMLWGF 833
+ +PAV+ I WGF
Sbjct: 280 KIFDICLDNPAVKAIQFWGF 299
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 28/252 (11%)
Query: 574 KQTQNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
++ +N F IG+ + Q+ NE V+ ++FN V N +K + ++G FN++ AD +
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 634 LDLCLNHNIQTRGHCIFWEVQA---------------TVQPWIQSLNKNDLMTAVQNRLT 678
+ + + R H + W Q P + NK L+ ++ +
Sbjct: 82 VKFAKANGMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIK 141
Query: 679 GLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATLFVN 731
++ RYK +++DV NE+ L S + G D F+ A + + L++N
Sbjct: 142 TIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMN 201
Query: 732 DYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS--PVGPIVCSALDNLGIL 789
DY+ E +P+ + + L+E+G P+ GIG Q HI P + ++ L
Sbjct: 202 DYNTE--VEPKRT--ALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAAL 257
Query: 790 GLPIWFTELDVS 801
GL TELDVS
Sbjct: 258 GLDNQITELDVS 269
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 118/267 (44%), Gaps = 23/267 (8%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G ++ +++ + FN V N +KW TE Q +F++ D + +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 642 IQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML--- 698
+ GH + W Q + W ++LN + +A+ N +T + ++GK +DV NE
Sbjct: 75 KELYGHTLVWHSQ--LPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 699 ----HGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN 754
S +Q KLG F+ A D +A L +NDY+VE G + +S+ + + +
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVE-GINAKSN--SLYDLVKD 189
Query: 755 LQEQGAPVGGIGIQGHIDSPVGPIVCSALDNL---GILGLPIWFTELDV------SSINE 805
+ +G P+ +G Q H+ VG + NL LG+ + TELD+ +
Sbjct: 190 FKARGVPLDCVGFQSHL--IVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKL 247
Query: 806 YVRGEDLEVMLREAFAHPAVEGIMLWG 832
+ D + +++ +G+ +WG
Sbjct: 248 ATQAADYKKVVQACMQVTRCQGVTVWG 274
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 118/267 (44%), Gaps = 23/267 (8%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G ++ +++ + FN V N +KW TE Q +F++ D + +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 642 IQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML--- 698
+ GH + W Q + W ++LN + +A+ N +T + ++GK +DV NE
Sbjct: 75 KELYGHTLVWHSQ--LPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 699 ----HGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN 754
S +Q KLG F+ A D +A L +NDY+VE G + +S+ + + +
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVE-GINAKSN--SLYDLVKD 189
Query: 755 LQEQGAPVGGIGIQGHIDSPVGPIVCSALDNL---GILGLPIWFTELDV------SSINE 805
+ +G P+ +G Q H+ VG + NL LG+ + TELD+ +
Sbjct: 190 FKARGVPLDCVGFQSHL--IVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKL 247
Query: 806 YVRGEDLEVMLREAFAHPAVEGIMLWG 832
+ D + +++ +G+ +WG
Sbjct: 248 ATQAADYKKVVQACMQVTRCQGVTVWG 274
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 27/246 (10%)
Query: 580 FPIGSCINRSQ------IDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
FPIG ++ + + N K+FN GN +K + + +GNFN+ +AD
Sbjct: 175 FPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAF 234
Query: 634 LDLCLNHNIQTRGHCIFWEVQATVQPWIQSL--NKNDLMTAVQNRLTGLLARY--KGKFR 689
+D +N+ GH + W V ++++ + D + A+ +T ++ Y KG
Sbjct: 235 VDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLV 294
Query: 690 HYDVNNEMLHGSFYQDKLGKDIRAYM------------FKTAHQLDLSATLFVNDYHVED 737
+DV N + + + D Y+ F+TA D + L+ NDY++E
Sbjct: 295 SWDVVNAAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQ 354
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILGLPIWF 795
+ K ++ + + Q + P+ G+G Q H+ + P + +A+ + LGL +
Sbjct: 355 N---NAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLVKI 411
Query: 796 TELDVS 801
TELDV+
Sbjct: 412 TELDVA 417
>pdb|3U7B|A Chain A, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|B Chain B, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|C Chain C, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|D Chain D, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|E Chain E, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
Length = 327
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 611 NELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKND-- 668
N +KW + +G FN+ AD + + R H + W Q + W+ + N N+
Sbjct: 46 NAMKWEAIQPNRGQFNWGPADQHAAAATSRGYELRCHTLVWHSQ--LPSWVANGNWNNQT 103
Query: 669 LMTAVQNRLTGLLARYKGKFRHYDVNNEMLH-GSFYQDK-----LGKDIRAYMFKTAHQL 722
L +++ + ++ RY+GK H+DV NE L+ Y+D +G+ F+ A
Sbjct: 104 LQAVMRDHINAVMGRYRGKCTHWDVVNEALNEDGTYRDSVFLRVIGEAYIPIAFRMALAA 163
Query: 723 DLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPI---- 778
D + L+ NDY++E G + ++ K I + ++ G + GIG+Q H+ S P
Sbjct: 164 DPTTKLYYNDYNLEYG-NAKTEGAKRIARL--VKSYGLRIDGIGLQAHMTSESTPTQNTP 220
Query: 779 ------VCSALDNLGILGLPIWFTELDV 800
+ S L L LG+ + +TELD+
Sbjct: 221 TPSRAKLASVLQGLADLGVDVAYTELDI 248
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 28/252 (11%)
Query: 574 KQTQNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
++ +N F IG+ + Q+ NE V+ ++FN V N +K + ++G FN++ AD +
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 634 LDLCLNHNIQTRGHCIFWEVQA---------------TVQPWIQSLNKNDLMTAVQNRLT 678
+ + + R H + W Q P + NK L+ ++ +
Sbjct: 82 VKFAKANGMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIK 141
Query: 679 GLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATLFVN 731
++ RYK +++DV N + L S + G D F+ A + + L++N
Sbjct: 142 TIVERYKDDIKYWDVVNAVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMN 201
Query: 732 DYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS--PVGPIVCSALDNLGIL 789
DY+ E +P+ + + L+E+G P+ GIG Q HI P + ++ L
Sbjct: 202 DYNTE--VEPKRT--ALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAAL 257
Query: 790 GLPIWFTELDVS 801
GL T LDVS
Sbjct: 258 GLDNQITALDVS 269
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 23/267 (8%)
Query: 582 IGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHN 641
G ++ +++ + FN V N +KW TE Q +F++ D + +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 642 IQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML--- 698
+ GH + W Q + W ++LN + +A+ N +T + ++GK +DV N
Sbjct: 75 KELYGHTLVWHSQ--LPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNAAFADG 132
Query: 699 ----HGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILN 754
S +Q KLG F+ A D +A L +NDY+VE G + +S+ + + +
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVE-GINAKSN--SLYDLVKD 189
Query: 755 LQEQGAPVGGIGIQGHIDSPVGPIVCSALDNL---GILGLPIWFTELDV------SSINE 805
+ +G P+ +G Q ++ VG + NL LG+ + TELD+ +
Sbjct: 190 FKARGVPLDCVGFQSNL--IVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKL 247
Query: 806 YVRGEDLEVMLREAFAHPAVEGIMLWG 832
+ D + +++ +G+ +WG
Sbjct: 248 ATQAADYKKVVQACMQVTRCQGVTVWG 274
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 31/251 (12%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
++ FPIG+ I + + + K+ N V N +K + +GNF + DAD ++
Sbjct: 13 RDYFPIGAAIEPGYTTGQ-IAELYKKHVNMLVAENAMKPASLQPTEGNFQWADADRIVQF 71
Query: 637 CLNHNIQTRGHCIFWEVQA---------------TVQPWIQSLNKNDLMTAVQNRLTGLL 681
+ ++ R H + W Q P + N+ L+ ++N + ++
Sbjct: 72 AKENGMELRFHTLVWHNQTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRLENYIRAVV 131
Query: 682 ARYKGKFRHYDVNNE---------MLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVND 732
RYK + +DV NE M + +YQ + I T L++ND
Sbjct: 132 LRYKDDIKSWDVVNEVIEPNDPGGMRNSPWYQITGTEYIEVAFRATREAGGSDIKLYIND 191
Query: 733 YHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPI--VCSALDNLGILG 790
Y+ +D + E + NL E+G P+ G+G Q HID P+ + ++ LG
Sbjct: 192 YNTDDPV----KRDILYELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIESIKKFAGLG 247
Query: 791 LPIWFTELDVS 801
L TELD+S
Sbjct: 248 LDNIITELDMS 258
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 29/252 (11%)
Query: 574 KQTQNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM 633
++ Q F IG+ + Q++ + ++N V N +K + ++G +N++ AD +
Sbjct: 13 ERYQEQFDIGAAVEPYQLEGRQ-AQILKHHYNSLVAENAMKPVSLQPREGEWNWEGADKI 71
Query: 634 LDLCLNHNIQTRGHCIFWEVQA---------------TVQPWIQSLNKNDLMTAVQNRLT 678
++ HN++ R H + W Q P + NK L+ ++N +
Sbjct: 72 VEFARKHNMELRFHTLVWHSQVPEWFFIDENGNRMVDETDPEKRKANKQLLLERMENHIK 131
Query: 679 GLLARYKGKFRHYDVNNEM------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATLFVN 731
++ RYK +DV NE+ L S + G D F+TA + A L++N
Sbjct: 132 TVVERYKDDVTSWDVVNEVIDDDGGLRESEWYQITGTDYIKVAFETARKYGGEEAKLYIN 191
Query: 732 DYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS--PVGPIVCSALDNLGIL 789
DY+ E S + + +L EQG P+ G+G Q HI P ++ + L
Sbjct: 192 DYNTE----VPSKRDDLYNLVKDLLEQGVPIDGVGHQSHIQIGWPSIEDTRASFEKFTSL 247
Query: 790 GLPIWFTELDVS 801
GL TELD+S
Sbjct: 248 GLDNQVTELDMS 259
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
+ SF IG+ + Q++ K ++N V N +K + ++G F + AD +++
Sbjct: 15 EESFDIGAAVEPHQLNGRQ-GKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEF 73
Query: 637 CLNHNIQTRGHCIFWEVQATVQPWI-----------------QSLNKNDLMTAVQNRLTG 679
+N+ R H + W Q V W + NK L+ ++ +
Sbjct: 74 ARKNNMNLRFHTLVWHNQ--VPDWFFLDEEGNPMVEETNEAKRQANKELLLERLETHIKT 131
Query: 680 LLARYKGKFRHYDVNNEM----------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATL 728
++ RYK +DV NE+ L S + G + F+TA + A L
Sbjct: 132 VVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKL 191
Query: 729 FVNDYHVEDGCDPRSSPEKYIEHILNLQE----QGAPVGGIGIQGH--IDSPVGPIVCSA 782
F+NDY+ E +P++ +H+ NL + G P+ G+G Q H ID P + ++
Sbjct: 192 FINDYNTE------VTPKR--DHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTS 243
Query: 783 LDNLGILGLPIWFTELDVS 801
++ LGL TELDVS
Sbjct: 244 MEMFAGLGLDNQVTELDVS 262
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
+ SF IG+ + Q++ K ++N V N +K + ++G F + AD +++
Sbjct: 16 EESFDIGAAVEPHQLNGRQ-GKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEF 74
Query: 637 CLNHNIQTRGHCIFWEVQATVQPWI-----------------QSLNKNDLMTAVQNRLTG 679
+N+ R H + W Q V W + NK L+ ++ +
Sbjct: 75 ARKNNMNLRFHTLVWHNQ--VPDWFFLDEEGNPMVEETNEAKRQANKELLLERLETHIKT 132
Query: 680 LLARYKGKFRHYDVNNEM----------LHGSFYQDKLGKDIRAYMFKTAHQL-DLSATL 728
++ RYK +DV NE+ L S + G + F+TA + A L
Sbjct: 133 VVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKL 192
Query: 729 FVNDYHVEDGCDPRSSPEKYIEHILNLQE----QGAPVGGIGIQGH--IDSPVGPIVCSA 782
F+NDY+ E +P++ +H+ NL + G P+ G+G Q H ID P + ++
Sbjct: 193 FINDYNTE------VTPKR--DHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTS 244
Query: 783 LDNLGILGLPIWFTELDVS 801
++ LGL TELDVS
Sbjct: 245 MEMFAGLGLDNQVTELDVS 263
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 26/268 (9%)
Query: 589 SQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHC 648
++ + ++K + F N +K+ +TE++Q FN+ + + L++ + R H
Sbjct: 26 AETTDAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHN 85
Query: 649 IFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHG------SF 702
+ W Q + ++ +L ++N + + + + +DV NE L+G S
Sbjct: 86 LVWASQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSV 145
Query: 703 YQDKLGKDIRAYMFKTAHQLDLS-----ATLFVNDYHVEDGCDPRSSPEKYIEHILNLQE 757
+ D +G++ FK A + L+ NDY +E +P + ++ + NL++
Sbjct: 146 WYDTIGEEYFYLAFKYAQEALAQIGANDVKLYYNDYGIE---NPGTKSTAVLQLVSNLRK 202
Query: 758 QGAPVGGIGIQGHIDSPVGPIVCSALDNLGIL---GLPIWFTELDV--SSINEYV----- 807
+G + G+G++ H P + L L + TELDV S++ Y
Sbjct: 203 RGIRIDGVGLESHFIVGETPSLADQLATKQAYIKANLDVAVTELDVRFSTVPYYTAAAQK 262
Query: 808 -RGEDLEVMLREAF-AHPAVEGIMLWGF 833
+ ED V + A P G+++W F
Sbjct: 263 QQAEDYYVSVASCMNAGPRCIGVVVWDF 290
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 39/269 (14%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 67
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 68 SWAAQNGQTVHGHTLVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 126
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 127 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 186
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 187 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 243
Query: 794 WFTELDV--------SSINEYVRGEDLEV 814
TELDV +S NEY D V
Sbjct: 244 KITELDVRLNNPYDGNSSNEYTNRNDCAV 272
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 31/272 (11%)
Query: 561 LDCSSMLGTFVKVKQTQNSFPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKW 615
+ C S L + FPIG + S + + F FN N +K
Sbjct: 1 MACRSTLEDRSPGLASLADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKM 60
Query: 616 YWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQN 675
+ S NF++ ++D ++ + GH + W + W N N
Sbjct: 61 SYMYSG-SNFSFTNSDRLVSWAAQNGQTVHGHTLVWHPSYQLPNWASDSNAN-FRQDFAR 118
Query: 676 RLTGLLARYKGKFRHYDVNNEMLHGS-----------------FYQDKLGKDIRAYMFKT 718
+ + A + G+ + +DV NE L S FY+ G + F+
Sbjct: 119 HIDTVAAHFAGQVKSWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRR 178
Query: 719 AHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVG 776
A D +A L+ ND++ E+ ++ ++ +LN G P+ G+G Q H+ D P
Sbjct: 179 ARAADPTAELYYNDFNTEENGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSI 235
Query: 777 PIVCSALDNLGILG--LPIWFTELDVSSINEY 806
+ A+ + L L I TELDV N Y
Sbjct: 236 ANIRQAMQKIVALSPTLKIKITELDVRLNNPY 267
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 31/253 (12%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 67
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 68 SWAAQNGQTVHGHALVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 126
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 127 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 186
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 187 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 243
Query: 794 WFTELDVSSINEY 806
TELDV N Y
Sbjct: 244 KITELDVRLNNPY 256
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 31/253 (12%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 67
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 68 SWAAQNGQTVHGHALVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 126
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 127 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 186
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 187 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 243
Query: 794 WFTELDVSSINEY 806
TELDV N Y
Sbjct: 244 KITELDVRLNNPY 256
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 31/253 (12%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 8 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 66
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 67 SWAAQNGQTVHGHALVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 125
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 126 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 185
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 186 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 242
Query: 794 WFTELDVSSINEY 806
TELDV N Y
Sbjct: 243 KITELDVRLNNPY 255
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 42/274 (15%)
Query: 577 QNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDL 636
+N F IG+ I+ ++ ++ + + GN +K + +GNF + AD M+D
Sbjct: 12 KNDFLIGNAISAEDLEGTR-LELLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDK 70
Query: 637 CLNHNIQTRGHCIFWEVQATVQPWIQS----------LNKNDLMTAVQNRLTGLLARYKG 686
L ++ GH + W Q+ W+ + L +++ + ++ + ++ +
Sbjct: 71 VLAEGMKMHGHVLVWHQQSPA--WLNTKKDDNNNTVPLGRDEALDNLRTHIQTVMKHFGN 128
Query: 687 KFRHYDVNNEMLHGS---------------FYQDKLGKDIRAYMFKTAHQ-LDLSAT--- 727
K +DV NE ++ + +YQ +G D F A + LD + +
Sbjct: 129 KVISWDVVNEAMNDNPSNPADYKASLRQTPWYQ-AIGSDYVEQAFLAAREVLDENPSWNI 187
Query: 728 -LFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVG-----GIGIQGHIDSPVGPI-VC 780
L+ NDY+ ED + ++ ++ I N + A G G+G+QGH + P V
Sbjct: 188 KLYYNDYN-EDNQNKATAIYNMVKDI-NDRYAAAHNGKLLIDGVGMQGHYNINTNPDNVK 245
Query: 781 SALDNLGILGLPIWFTELDVSSINEYVRGEDLEV 814
+L+ LG+ + +ELDV++ N Y E+L V
Sbjct: 246 LSLEKFISLGVEVSVSELDVTAGNNYTLPENLAV 279
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 31/253 (12%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 8 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 66
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 67 SWAAQNGQTVHGHALVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 125
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 126 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 185
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 186 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 242
Query: 794 WFTELDVSSINEY 806
T LDV N Y
Sbjct: 243 KITCLDVRLNNPY 255
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 31/253 (12%)
Query: 580 FPIGSCINRSQIDNEDFVK-----FFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDML 634
FPIG + S + + F FN N +K + S NF++ ++D ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGS-NFSFTNSDRLV 67
Query: 635 DLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVN 694
+ GH + W + W N N + + A + G+ + +DV
Sbjct: 68 SWAAQNGQTVHGHALVWHPSYQLPNWASDSNAN-FRQDFARHIDTVAAHFAGQVKSWDVV 126
Query: 695 NEMLHGS-----------------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVED 737
NE L S FY+ G + F+ A D +A L+ ND++ E+
Sbjct: 127 NEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTEE 186
Query: 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DSPVGPIVCSALDNLGILG--LPI 793
++ ++ +LN G P+ G+G Q H+ D P + A+ + L L I
Sbjct: 187 NGAKTTALVNLVQRLLN---NGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKI 243
Query: 794 WFTELDVSSINEY 806
T LDV N Y
Sbjct: 244 KITCLDVRLNNPY 256
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 74/284 (26%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFN------YKDAD 631
N F +GS +N ++N + FN NE+K T Q G+ N A
Sbjct: 190 NYFRVGSVLNSGTVNNSSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAA 249
Query: 632 DMLDLCLNHNIQTRGHCIFWEVQATVQ-----------PWI-QSLNKNDLMTAVQNRLTG 679
+L+ C +NI RGH + W Q T Q W+ QS+ L + ++N
Sbjct: 250 SILNFCAQNNIAVRGHTLVWHSQ-TPQWFFKDNFQDNGNWVSQSVMDQRLESYIKNMFAE 308
Query: 680 LLARY------------------KGKFRHYDVNNEMLHGS--------FYQDKLGKDIRA 713
+ +Y + R+Y E +G+ + +K +
Sbjct: 309 IQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFT 368
Query: 714 YMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEH--------ILNLQEQGAPVGGI 765
Y K A + L+ NDY+ +Y +H NL +G + G+
Sbjct: 369 YARKYA---PANCKLYYNDYN------------EYWDHKRDCIASICANLYNKGL-LDGV 412
Query: 766 GIQGHIDSPVGPI-----VCSALDNLGILGLPIWFTELDVSSIN 804
G+Q HI++ + +AL +G + TELD+S+ N
Sbjct: 413 GMQSHINADMNGFSGIQNYKAALQKYINIGCDVQITELDISTEN 456
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 74/284 (26%)
Query: 578 NSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFN------YKDAD 631
N F +GS +N ++N + FN NE K T Q G+ N A
Sbjct: 190 NYFRVGSVLNSGTVNNSSIKALILREFNSITCENEXKPDATLVQSGSTNTNIRVSLNRAA 249
Query: 632 DMLDLCLNHNIQTRGHCIFWEVQATVQ-----------PWI-QSLNKNDLMTAVQNRLTG 679
+L+ C +NI RGH + W Q T Q W+ QS+ L + ++N
Sbjct: 250 SILNFCAQNNIAVRGHTLVWHSQ-TPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAE 308
Query: 680 LLARY------------------KGKFRHYDVNNEMLHGS--------FYQDKLGKDIRA 713
+ +Y + R+Y E +G+ + +K +
Sbjct: 309 IQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFT 368
Query: 714 YMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEH--------ILNLQEQGAPVGGI 765
Y K A + L+ NDY+ +Y +H NL +G + G+
Sbjct: 369 YARKYA---PANCKLYYNDYN------------EYWDHKRDCIASICANLYNKGL-LDGV 412
Query: 766 GIQGHIDSPVGPI-----VCSALDNLGILGLPIWFTELDVSSIN 804
G Q HI++ +AL +G + TELD+S+ N
Sbjct: 413 GXQSHINADXNGFSGIQNYKAALQKYINIGCDVQITELDISTEN 456
>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 209
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 590 QIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLD------LCLNHNIQ 643
++D EDF ++ + F + G+EL+ + T + F + +D+ L +CL +N
Sbjct: 76 KLDREDFAVYYCQQFEFFGLGSELEVHRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFY 135
Query: 644 TRGHCIFWEVQATVQ 658
R + W+V +Q
Sbjct: 136 PREAKVQWKVDNALQ 150
>pdb|3QT2|A Chain A, Structure Of A Cytokine Ligand-Receptor Complex
pdb|3QT2|B Chain B, Structure Of A Cytokine Ligand-Receptor Complex
Length = 317
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 23 INLSTSTAANLIVNNDFSMGLHSWHPNCCHAFIASAESHYPEGTSANSVGNHAVVTNRKE 82
+++ S + I+ ND S+ SW ASAE H P G+ S+ N TN E
Sbjct: 72 LHMGFSASVRTILQNDHSLLASSW---------ASAELHAPPGSPGTSIVNLTCTTNTTE 122
>pdb|3VA2|C Chain C, Crystal Structure Of Human Interleukin-5 In Complex With
Its Alpha Receptor
Length = 322
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 28 STAANLIVNNDFSMGLHSWHPNCCHAFIASAESHYPEGTSANSVGNHAVVTNRKE 82
S + I+ ND S+ SW ASAE H P G+ S+ N TN E
Sbjct: 82 SASVRTILQNDHSLLASSW---------ASAELHAPPGSPGTSIVNLTCTTNTTE 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,803,922
Number of Sequences: 62578
Number of extensions: 1262406
Number of successful extensions: 2815
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 54
length of query: 921
length of database: 14,973,337
effective HSP length: 108
effective length of query: 813
effective length of database: 8,214,913
effective search space: 6678724269
effective search space used: 6678724269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)