Query 002447
Match_columns 921
No_of_seqs 401 out of 1861
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00331 Glyco_hydro_10: Glyco 100.0 2E-64 4.4E-69 557.3 21.5 281 575-861 5-318 (320)
2 COG3693 XynA Beta-1,4-xylanase 100.0 2.2E-59 4.8E-64 486.6 25.9 256 601-862 55-340 (345)
3 smart00633 Glyco_10 Glycosyl h 100.0 9.7E-55 2.1E-59 466.9 25.6 242 613-859 1-254 (254)
4 PF07745 Glyco_hydro_53: Glyco 99.6 3.2E-14 7E-19 155.8 24.5 251 595-859 28-332 (332)
5 PF02018 CBM_4_9: Carbohydrate 99.6 5.9E-14 1.3E-18 134.8 15.0 126 31-171 1-128 (131)
6 PF02018 CBM_4_9: Carbohydrate 99.6 9.2E-14 2E-18 133.5 16.1 125 204-341 1-127 (131)
7 PLN03089 hypothetical protein; 99.5 1.6E-11 3.5E-16 134.8 30.7 291 27-358 23-366 (373)
8 PLN03089 hypothetical protein; 99.4 2E-10 4.4E-15 126.3 27.1 283 203-533 26-365 (373)
9 PF01229 Glyco_hydro_39: Glyco 99.4 7.4E-11 1.6E-15 138.7 23.9 245 603-863 53-360 (486)
10 PF02449 Glyco_hydro_42: Beta- 99.3 3.9E-11 8.5E-16 136.7 20.0 252 596-867 16-372 (374)
11 TIGR03356 BGL beta-galactosida 99.3 3.5E-10 7.6E-15 130.3 23.2 249 601-857 65-425 (427)
12 PF00232 Glyco_hydro_1: Glycos 99.2 2.1E-10 4.6E-15 133.7 15.3 260 599-864 66-451 (455)
13 PF00150 Cellulase: Cellulase 99.2 2.4E-09 5.3E-14 116.9 21.2 222 595-835 26-279 (281)
14 PRK10150 beta-D-glucuronidase; 99.1 8.6E-09 1.9E-13 124.9 24.4 230 599-862 321-591 (604)
15 COG3867 Arabinogalactan endo-1 99.1 2.9E-08 6.2E-13 103.2 22.3 275 575-862 34-394 (403)
16 PF11790 Glyco_hydro_cc: Glyco 99.0 5E-09 1.1E-13 111.6 16.9 167 685-859 63-239 (239)
17 PRK09852 cryptic 6-phospho-bet 99.0 4.5E-08 9.8E-13 113.8 25.6 261 598-864 78-467 (474)
18 PRK13511 6-phospho-beta-galact 99.0 4.7E-08 1E-12 114.1 25.6 261 598-865 61-465 (469)
19 PRK15014 6-phospho-beta-glucos 99.0 6.6E-08 1.4E-12 112.6 24.8 260 598-864 76-471 (477)
20 PRK09593 arb 6-phospho-beta-gl 99.0 5.7E-08 1.2E-12 113.3 24.3 261 598-865 80-472 (478)
21 PLN02998 beta-glucosidase 98.9 1E-07 2.2E-12 111.4 23.4 259 598-864 89-486 (497)
22 TIGR01233 lacG 6-phospho-beta- 98.9 2.6E-07 5.6E-12 107.7 25.6 259 598-865 60-463 (467)
23 PLN02814 beta-glucosidase 98.9 2.4E-07 5.2E-12 108.5 24.7 260 598-866 84-483 (504)
24 PRK09589 celA 6-phospho-beta-g 98.9 5.8E-07 1.2E-11 104.9 26.9 260 598-864 74-470 (476)
25 PLN02849 beta-glucosidase 98.9 3.5E-07 7.5E-12 107.1 24.4 260 598-865 86-482 (503)
26 PF01301 Glyco_hydro_35: Glyco 98.5 6.4E-06 1.4E-10 91.5 21.1 260 578-865 8-318 (319)
27 COG2723 BglB Beta-glucosidase/ 98.5 1E-05 2.2E-10 91.7 22.1 258 598-864 66-451 (460)
28 PF02836 Glyco_hydro_2_C: Glyc 98.5 7.7E-07 1.7E-11 98.5 12.5 212 601-863 47-293 (298)
29 PRK10340 ebgA cryptic beta-D-g 97.9 0.00081 1.8E-08 85.9 22.2 239 565-865 328-601 (1021)
30 PLN03059 beta-galactosidase; P 97.9 0.0046 1E-07 75.4 26.6 251 579-866 44-342 (840)
31 PF04862 DUF642: Protein of un 97.8 0.00028 6.1E-09 70.3 13.6 135 32-184 1-159 (159)
32 PF04862 DUF642: Protein of un 97.8 0.00039 8.5E-09 69.3 14.1 102 239-355 54-159 (159)
33 PRK09525 lacZ beta-D-galactosi 97.6 0.00096 2.1E-08 85.1 16.6 216 601-865 382-627 (1027)
34 PF02055 Glyco_hydro_30: O-Gly 97.4 0.031 6.7E-07 65.8 23.7 258 633-911 158-476 (496)
35 COG3664 XynB Beta-xylosidase [ 97.3 0.0057 1.2E-07 67.8 15.1 222 622-865 34-294 (428)
36 PF12876 Cellulase-like: Sugar 97.1 0.0008 1.7E-08 60.1 4.9 53 680-732 1-64 (88)
37 KOG0626 Beta-glucosidase, lact 96.9 0.054 1.2E-06 62.6 18.6 90 603-699 104-204 (524)
38 COG1874 LacA Beta-galactosidas 96.0 0.018 4E-07 69.1 8.7 115 577-696 13-160 (673)
39 PF15425 DUF4627: Domain of un 95.9 0.22 4.7E-06 49.1 13.5 146 29-184 4-211 (212)
40 PF14587 Glyco_hydr_30_2: O-Gl 95.9 0.33 7.2E-06 54.5 16.9 212 618-839 91-362 (384)
41 COG3934 Endo-beta-mannanase [C 95.7 0.012 2.7E-07 66.1 5.0 249 626-893 65-353 (587)
42 COG5520 O-Glycosyl hydrolase [ 95.7 0.19 4.2E-06 54.8 13.5 185 637-837 111-313 (433)
43 PF03425 CBM_11: Carbohydrate 95.6 0.13 2.9E-06 52.2 11.8 109 240-358 40-171 (178)
44 PF07675 Cleaved_Adhesin: Clea 95.1 1 2.2E-05 45.4 16.1 141 207-354 2-167 (167)
45 PF03425 CBM_11: Carbohydrate 94.7 0.38 8.3E-06 48.9 11.9 109 69-188 40-172 (178)
46 PF07675 Cleaved_Adhesin: Clea 94.5 1.7 3.7E-05 43.7 16.0 141 34-183 2-167 (167)
47 cd06263 MAM Meprin, A5 protein 94.0 2.3 5E-05 41.9 15.9 140 38-185 2-154 (157)
48 cd06263 MAM Meprin, A5 protein 93.2 2.7 6E-05 41.3 14.7 107 421-532 40-154 (157)
49 PF13204 DUF4038: Protein of u 92.1 0.39 8.4E-06 52.9 7.4 176 627-830 87-280 (289)
50 smart00137 MAM Domain in mepri 91.6 12 0.00026 37.2 17.0 107 243-357 47-159 (161)
51 smart00137 MAM Domain in mepri 91.5 7.1 0.00015 38.8 15.2 107 72-186 47-159 (161)
52 COG2730 BglC Endoglucanase [Ca 90.4 1.6 3.5E-05 50.5 10.7 119 598-726 81-219 (407)
53 PF02057 Glyco_hydro_59: Glyco 90.3 24 0.00052 42.8 20.1 229 632-894 116-369 (669)
54 PF15425 DUF4627: Domain of un 90.3 2.3 4.9E-05 42.2 9.7 109 243-355 57-211 (212)
55 PF13620 CarboxypepD_reg: Carb 89.5 0.92 2E-05 39.3 6.1 50 869-919 29-81 (82)
56 PF00629 MAM: MAM domain; Int 89.1 9.5 0.00021 37.1 13.8 108 243-357 45-156 (160)
57 PF00629 MAM: MAM domain; Int 86.1 14 0.00031 35.8 13.0 107 72-186 45-156 (160)
58 PLN02161 beta-amylase 86.0 4.5 9.8E-05 46.9 10.2 64 596-662 123-196 (531)
59 PLN02803 beta-amylase 85.9 3.9 8.4E-05 47.7 9.7 64 597-663 114-187 (548)
60 PF09212 CBM27: Carbohydrate b 85.6 11 0.00024 37.9 11.5 139 209-355 10-168 (170)
61 PF00332 Glyco_hydro_17: Glyco 85.3 1.1 2.4E-05 49.8 4.9 74 779-853 216-305 (310)
62 KOG0496 Beta-galactosidase [Ca 85.1 3.1 6.7E-05 49.6 8.5 114 581-697 36-175 (649)
63 PLN00197 beta-amylase; Provisi 84.8 4.8 0.0001 47.1 9.7 64 597-663 134-207 (573)
64 TIGR01370 cysRS possible cyste 82.5 12 0.00026 41.5 11.4 141 667-822 143-296 (315)
65 COG3250 LacZ Beta-galactosidas 82.2 7.7 0.00017 48.6 10.8 99 601-732 332-433 (808)
66 PLN02705 beta-amylase 82.0 8.1 0.00018 45.7 10.1 64 596-662 274-347 (681)
67 PF14299 PP2: Phloem protein 2 80.9 19 0.00041 35.7 11.2 90 265-356 55-153 (154)
68 PLN02905 beta-amylase 80.9 9.4 0.0002 45.3 10.1 64 597-663 293-366 (702)
69 PF14299 PP2: Phloem protein 2 78.9 26 0.00057 34.6 11.5 91 93-185 54-153 (154)
70 PF14488 DUF4434: Domain of un 78.7 43 0.00093 33.6 13.0 133 591-733 17-162 (166)
71 COG3693 XynA Beta-1,4-xylanase 77.9 0.17 3.7E-06 54.9 -4.6 144 402-572 62-226 (345)
72 PLN02801 beta-amylase 77.2 4.4 9.5E-05 47.0 6.0 63 597-662 44-116 (517)
73 PF01373 Glyco_hydro_14: Glyco 76.8 3.1 6.8E-05 47.1 4.7 95 596-697 22-150 (402)
74 smart00812 Alpha_L_fucos Alpha 75.4 24 0.00051 40.6 11.4 147 525-732 73-233 (384)
75 COG2342 Predicted extracellula 73.1 1E+02 0.0022 33.4 14.3 197 592-821 32-272 (300)
76 PF09092 Lyase_N: Lyase, N ter 72.1 19 0.00042 36.4 8.5 137 380-533 9-164 (178)
77 PF13715 DUF4480: Domain of un 71.9 13 0.00027 32.7 6.5 49 870-919 27-76 (88)
78 PF02638 DUF187: Glycosyl hydr 69.7 68 0.0015 35.7 13.1 156 626-788 68-281 (311)
79 PF03422 CBM_6: Carbohydrate b 69.5 59 0.0013 30.4 11.0 81 265-355 40-124 (125)
80 smart00560 LamGL LamG-like jel 68.2 20 0.00042 34.4 7.5 14 271-284 2-15 (133)
81 PF09212 CBM27: Carbohydrate b 64.1 61 0.0013 32.6 10.0 141 36-185 10-169 (170)
82 PF08400 phage_tail_N: Prophag 63.5 9.2 0.0002 36.7 4.0 46 870-915 39-86 (134)
83 PF12891 Glyco_hydro_44: Glyco 63.4 15 0.00033 38.8 5.9 58 672-729 105-176 (239)
84 PF03422 CBM_6: Carbohydrate b 61.7 1.1E+02 0.0024 28.4 11.3 84 94-185 40-125 (125)
85 PF05547 Peptidase_M6: Immune 61.1 1.4E+02 0.0031 36.6 14.4 152 237-435 335-502 (645)
86 PF04620 FlaA: Flagellar filam 60.8 91 0.002 32.7 11.1 80 238-324 70-153 (217)
87 smart00560 LamGL LamG-like jel 60.2 49 0.0011 31.6 8.6 23 145-169 61-83 (133)
88 PF05547 Peptidase_M6: Immune 60.0 1.1E+02 0.0023 37.6 13.1 132 66-224 335-481 (645)
89 PF14871 GHL6: Hypothetical gl 56.9 45 0.00098 32.1 7.6 91 594-685 3-124 (132)
90 PF01120 Alpha_L_fucos: Alpha- 53.2 56 0.0012 37.0 8.8 92 628-731 138-244 (346)
91 PF04620 FlaA: Flagellar filam 52.9 2.3E+02 0.005 29.8 12.5 81 66-153 69-153 (217)
92 cd03863 M14_CPD_II The second 52.5 34 0.00075 39.1 7.0 51 869-920 323-374 (375)
93 PF09092 Lyase_N: Lyase, N ter 51.2 90 0.002 31.7 8.9 133 208-357 8-164 (178)
94 PRK09485 mmuM homocysteine met 51.0 84 0.0018 34.8 9.7 73 747-825 141-215 (304)
95 PF03424 CBM_17_28: Carbohydra 49.6 2.8E+02 0.0061 28.6 11.9 14 212-225 41-55 (204)
96 TIGR03079 CH4_NH3mon_ox_B meth 49.6 19 0.00042 40.0 4.1 64 79-154 86-150 (399)
97 PF07611 DUF1574: Protein of u 48.6 25 0.00054 39.5 4.9 63 626-696 250-312 (345)
98 PF13385 Laminin_G_3: Concanav 48.4 1.2E+02 0.0026 28.6 9.4 17 268-284 20-36 (157)
99 cd03858 M14_CP_N-E_like Carbox 47.2 42 0.00092 38.4 6.7 50 870-919 324-374 (374)
100 cd03865 M14_CPE_H Peptidase M1 47.1 43 0.00093 38.6 6.6 49 871-920 353-402 (402)
101 PF05688 DUF824: Salmonella re 45.6 28 0.00061 27.1 3.3 23 553-575 16-38 (47)
102 cd06547 GH85_ENGase Endo-beta- 44.8 53 0.0011 37.1 6.8 95 631-730 49-146 (339)
103 cd06245 M14_CPD_III The third 44.5 49 0.0011 37.7 6.6 49 871-920 313-362 (363)
104 PRK14042 pyruvate carboxylase 44.1 2.4E+02 0.0053 34.3 12.6 94 671-774 96-209 (596)
105 PF08308 PEGA: PEGA domain; I 43.9 54 0.0012 27.4 5.3 36 884-920 32-68 (71)
106 PRK09936 hypothetical protein; 42.8 3.7E+02 0.008 29.5 12.4 158 591-768 35-214 (296)
107 PF15432 Sec-ASP3: Accessory S 42.2 3.2E+02 0.0069 26.2 11.3 84 257-357 44-127 (128)
108 PF03198 Glyco_hydro_72: Gluca 41.7 5.3E+02 0.012 28.7 14.0 230 598-861 60-308 (314)
109 COG2040 MHT1 Homocysteine/sele 41.4 94 0.002 33.8 7.6 47 750-802 138-184 (300)
110 PRK14040 oxaloacetate decarbox 39.9 6.2E+02 0.013 31.0 15.2 56 709-774 154-210 (593)
111 COG5309 Exo-beta-1,3-glucanase 39.8 5.3E+02 0.011 28.0 15.1 174 629-835 88-284 (305)
112 PF03746 LamB_YcsF: LamB/YcsF 37.5 1.2E+02 0.0026 32.4 7.7 92 628-731 42-143 (242)
113 PF13385 Laminin_G_3: Concanav 37.3 1.2E+02 0.0025 28.7 7.3 17 98-114 21-37 (157)
114 PRK12331 oxaloacetate decarbox 36.5 4.9E+02 0.011 30.6 13.3 105 672-795 97-202 (448)
115 COG5016 Pyruvate/oxaloacetate 35.5 5E+02 0.011 29.9 12.2 106 672-796 99-205 (472)
116 PRK14041 oxaloacetate decarbox 35.2 4.7E+02 0.01 30.9 12.9 26 672-697 96-121 (467)
117 PF03944 Endotoxin_C: delta en 35.1 3.1E+02 0.0066 26.6 9.7 35 152-186 107-142 (143)
118 cd03866 M14_CPM Peptidase M14 34.7 75 0.0016 36.4 6.1 48 872-919 325-374 (376)
119 PF15432 Sec-ASP3: Accessory S 34.0 4.3E+02 0.0094 25.3 12.4 79 94-186 49-127 (128)
120 TIGR01235 pyruv_carbox pyruvat 33.6 3.7E+02 0.0079 35.7 12.7 93 671-773 625-743 (1143)
121 PRK09282 pyruvate carboxylase 32.7 5E+02 0.011 31.8 13.0 92 673-774 98-209 (592)
122 TIGR01108 oadA oxaloacetate de 32.6 5.4E+02 0.012 31.4 13.2 54 710-773 149-203 (582)
123 smart00606 CBD_IV Cellulose Bi 32.0 4.3E+02 0.0093 24.7 10.2 77 266-354 49-129 (129)
124 PF12866 DUF3823: Protein of u 31.9 92 0.002 32.9 5.7 29 870-898 59-88 (222)
125 PF03659 Glyco_hydro_71: Glyco 31.7 2.1E+02 0.0046 32.9 9.1 76 745-824 16-92 (386)
126 PRK12569 hypothetical protein; 31.7 2.2E+02 0.0048 30.5 8.4 91 629-731 48-148 (245)
127 cd03864 M14_CPN Peptidase M14 31.0 1.1E+02 0.0024 35.2 6.7 48 870-919 342-391 (392)
128 PRK12330 oxaloacetate decarbox 30.9 5.9E+02 0.013 30.4 12.7 92 672-773 98-211 (499)
129 PRK12581 oxaloacetate decarbox 30.5 5.2E+02 0.011 30.6 12.1 61 625-698 70-132 (468)
130 PF03944 Endotoxin_C: delta en 30.1 3.5E+02 0.0077 26.2 9.2 34 323-356 107-141 (143)
131 PF03662 Glyco_hydro_79n: Glyc 30.1 69 0.0015 35.7 4.6 20 627-646 108-127 (319)
132 PF04914 DltD_C: DltD C-termin 29.8 2E+02 0.0044 27.6 7.2 74 625-705 33-107 (130)
133 PRK12999 pyruvate carboxylase; 29.4 4.9E+02 0.011 34.6 12.9 25 673-697 629-653 (1146)
134 PF00682 HMGL-like: HMGL-like 29.2 6.8E+02 0.015 26.2 13.3 123 628-774 67-193 (237)
135 smart00634 BID_1 Bacterial Ig- 28.6 61 0.0013 28.8 3.3 29 551-579 19-47 (92)
136 PF03424 CBM_17_28: Carbohydra 28.1 2.9E+02 0.0063 28.4 8.2 24 135-158 120-144 (204)
137 PRK03170 dihydrodipicolinate s 28.0 8.1E+02 0.018 26.7 15.3 111 621-758 15-125 (292)
138 cd03868 M14_CPD_I The first ca 27.8 1.3E+02 0.0028 34.4 6.6 48 871-919 323-372 (372)
139 PF03644 Glyco_hydro_85: Glyco 27.8 1.4E+02 0.0029 33.4 6.5 94 631-730 45-141 (311)
140 TIGR03700 mena_SCO4494 putativ 27.3 7.3E+02 0.016 28.0 12.5 125 707-834 109-245 (351)
141 PLN02489 homocysteine S-methyl 26.6 3E+02 0.0064 31.0 9.1 46 747-797 168-215 (335)
142 COG1453 Predicted oxidoreducta 26.6 5.8E+02 0.013 29.0 10.9 112 715-838 132-257 (391)
143 PF02383 Syja_N: SacI homology 26.0 1.4E+02 0.003 33.2 6.4 82 642-736 216-309 (319)
144 TIGR00977 LeuA_rel 2-isopropyl 25.8 1.2E+03 0.025 28.2 14.3 122 630-773 83-209 (526)
145 COG1540 Uncharacterized protei 25.3 3.7E+02 0.008 28.5 8.5 90 629-730 45-144 (252)
146 COG4981 Enoyl reductase domain 25.2 3.7E+02 0.008 32.0 9.3 72 750-831 112-183 (717)
147 cd00152 PTX Pentraxins are pla 25.0 3.5E+02 0.0076 27.8 8.7 25 490-516 88-112 (201)
148 cd03867 M14_CPZ Peptidase M14- 24.8 1.4E+02 0.003 34.5 6.2 51 869-919 343-395 (395)
149 PF04744 Monooxygenase_B: Mono 24.8 81 0.0018 35.4 4.0 63 79-153 66-129 (381)
150 KOG1579 Homocysteine S-methylt 24.3 2.6E+02 0.0057 30.9 7.6 68 749-822 151-220 (317)
151 PF10794 DUF2606: Protein of u 24.0 2.2E+02 0.0047 26.8 5.8 49 871-919 81-131 (131)
152 PRK07188 nicotinate phosphorib 23.5 1.6E+02 0.0035 33.4 6.1 51 709-773 263-315 (352)
153 PRK07534 methionine synthase I 23.2 2.8E+02 0.0061 31.2 8.0 82 710-796 85-176 (336)
154 COG3233 Predicted deacetylase 22.9 5.2E+02 0.011 27.2 9.0 76 710-795 18-114 (233)
155 PF13547 GTA_TIM: GTA TIM-barr 22.5 86 0.0019 34.0 3.5 13 790-802 206-218 (299)
156 smart00159 PTX Pentraxin / C-r 21.6 3.9E+02 0.0085 27.6 8.3 26 489-516 87-112 (206)
157 PF02574 S-methyl_trans: Homoc 21.5 2.8E+02 0.0061 30.6 7.6 105 709-819 81-210 (305)
158 PLN02746 hydroxymethylglutaryl 20.8 9.9E+02 0.021 27.1 11.7 99 664-774 155-253 (347)
159 cd00954 NAL N-Acetylneuraminic 20.8 1.1E+03 0.023 25.8 11.9 47 747-795 84-133 (288)
160 COG1182 AcpD Acyl carrier prot 20.7 3.5E+02 0.0075 28.1 7.2 109 670-801 19-128 (202)
161 PRK05406 LamB/YcsF family prot 20.7 4.4E+02 0.0096 28.3 8.3 91 629-731 45-145 (246)
162 PRK08645 bifunctional homocyst 20.6 5.9E+02 0.013 31.3 10.7 86 710-801 83-175 (612)
163 cd06599 GH31_glycosidase_Aec37 20.6 1.7E+02 0.0037 32.6 5.7 50 746-795 29-91 (317)
164 cd00952 CHBPH_aldolase Trans-o 20.1 9.4E+02 0.02 26.6 11.4 107 622-758 23-132 (309)
No 1
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=100.00 E-value=2e-64 Score=557.33 Aligned_cols=281 Identities=33% Similarity=0.628 Sum_probs=251.4
Q ss_pred eecCCCCeeeccCCCCCCCh-HHHHHHHhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecc
Q 002447 575 QTQNSFPIGSCINRSQIDNE-DFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEV 653 (921)
Q Consensus 575 ~~~~~F~fG~a~~~~~~~~~-~y~~~~~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~ 653 (921)
+.++.|.||+|++...+.++ .|++++.++||.+|+||+|||..+||++|+|+|+.+|++++||+++||+||||+|+||.
T Consensus 5 ~~~~~f~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~ 84 (320)
T PF00331_consen 5 AAKHKFPFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHS 84 (320)
T ss_dssp HHCTTTEEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS
T ss_pred HHhccCCEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcc
Confidence 36799999999999888765 89999999999999999999999999999999999999999999999999999999995
Q ss_pred cccchhhhcCC---CHH---HHHHHHHHHHHHHHHHcC--CeeeEEEeeccccccC---------cccccCChhHHHHHH
Q 002447 654 QATVQPWIQSL---NKN---DLMTAVQNRLTGLLARYK--GKFRHYDVNNEMLHGS---------FYQDKLGKDIRAYMF 716 (921)
Q Consensus 654 ~~~~P~W~~~~---~~~---~l~~~~~~~i~~v~~rY~--g~v~~WDVvNE~~~~~---------~~~~~lg~~~~~~af 716 (921)
++|+|+... +++ .++++|++||+++++||+ |+|.+||||||+++++ .|.+.+|++|+..||
T Consensus 85 --~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF 162 (320)
T PF00331_consen 85 --QTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAF 162 (320)
T ss_dssp --SS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHH
T ss_pred --cccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHH
Confidence 689999975 444 499999999999999999 7999999999999864 588999999999999
Q ss_pred HHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCC-HHHHHHHHHHHhhcCCCEEE
Q 002447 717 KTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPV-GPIVCSALDNLGILGLPIWF 795 (921)
Q Consensus 717 ~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~-~~~i~~~l~~~a~~glpi~i 795 (921)
++||+++|+++||||||+++.. .++..|+++|+.|+++|+||||||+|+|+.... ...|.+.|++|+++|+||+|
T Consensus 163 ~~A~~~~P~a~L~~NDy~~~~~----~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~Gl~i~I 238 (320)
T PF00331_consen 163 RAAREADPNAKLFYNDYNIESP----AKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLGLPIHI 238 (320)
T ss_dssp HHHHHHHTTSEEEEEESSTTST----HHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHhCCCcEEEeccccccch----HHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 9999999999999999999875 367899999999999999999999999986432 57899999999999999999
Q ss_pred eeeccCCCC-------ccchHHHHHHHHHHHHcCC--CeEEEEEEccCCCCCCCCC-----ccccCCCCCcchHHHHHHH
Q 002447 796 TELDVSSIN-------EYVRGEDLEVMLREAFAHP--AVEGIMLWGFWELFMSRDS-----AHLVNAEGDINEAGKKFLN 861 (921)
Q Consensus 796 TE~dv~~~~-------e~~qa~~~~~~l~~~~s~p--~v~gi~~Wg~~d~~~~~~~-----~gL~d~d~~pKpa~~~~~~ 861 (921)
|||||.... ++.||++++++|++|++|| +|+||++|||+|+.+|+++ ++|||.|++|||||+++.+
T Consensus 239 TElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 239 TELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAYDAIVD 318 (320)
T ss_dssp EEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHHHHHHH
T ss_pred EeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHHHHHHh
Confidence 999999865 5679999999999999999 9999999999999999987 9999999999999999875
No 2
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-59 Score=486.61 Aligned_cols=256 Identities=30% Similarity=0.499 Sum_probs=227.4
Q ss_pred HhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC--CCHHHHHHHHHHHHH
Q 002447 601 TKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS--LNKNDLMTAVQNRLT 678 (921)
Q Consensus 601 ~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~--~~~~~l~~~~~~~i~ 678 (921)
+++||.+|+||+|||+.++|++|.|+|+.+|++++||++|||.+|||+||||+ ++|+|++. ++++.+.+++++||.
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~--q~P~W~~~~e~~~~~~~~~~e~hI~ 132 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWHS--QVPDWLFGDELSKEALAKMVEEHIK 132 (345)
T ss_pred HhhhcccccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeecc--cCCchhhccccChHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999995 69999998 789999999999999
Q ss_pred HHHHHcCCeeeEEEeecccccc------Ccccc-cCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHH
Q 002447 679 GLLARYKGKFRHYDVNNEMLHG------SFYQD-KLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEH 751 (921)
Q Consensus 679 ~v~~rY~g~v~~WDVvNE~~~~------~~~~~-~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~ 751 (921)
+|++||+|++.+||||||++++ +.|.+ ..|+|||+.||+.||++||+|+|+||||+++.. ..++..+++|
T Consensus 133 tV~~rYkg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~---~~kr~~~~nl 209 (345)
T COG3693 133 TVVGRYKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGN---PAKRNYVLNL 209 (345)
T ss_pred HHHHhccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCC---hHHHHHHHHH
Confidence 9999999999999999999874 46766 788999999999999999999999999997653 2467788899
Q ss_pred HHHHHHCCCceeeEEeeccCCC--CCHHHHHHHHHHHhhcCCCEEEeeeccCCCC--c-------cchHHHHHHHHHHHH
Q 002447 752 ILNLQEQGAPVGGIGIQGHIDS--PVGPIVCSALDNLGILGLPIWFTELDVSSIN--E-------YVRGEDLEVMLREAF 820 (921)
Q Consensus 752 i~~l~~~g~piDgIG~Q~H~~~--p~~~~i~~~l~~~a~~glpi~iTE~dv~~~~--e-------~~qa~~~~~~l~~~~ 820 (921)
|++|+++|+||||||+|+||+. |....++..|.+++.+|+||+||||||+..+ . ..|+. ....+..++
T Consensus 210 I~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~-~~~~f~~~~ 288 (345)
T COG3693 210 IEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAAS-RAKAFLLLL 288 (345)
T ss_pred HHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999863 5677899999999999999999999998731 1 11222 344566667
Q ss_pred cCCC-eEEEEEEccCCCCCCCCC---------ccccCCCCCcchHHHHHHHH
Q 002447 821 AHPA-VEGIMLWGFWELFMSRDS---------AHLVNAEGDINEAGKKFLNL 862 (921)
Q Consensus 821 s~p~-v~gi~~Wg~~d~~~~~~~---------~gL~d~d~~pKpa~~~~~~l 862 (921)
..|+ |++|++||+.|..+|... +.|||.+++|||+|.++.++
T Consensus 289 ~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n~~pKPa~~aI~e~ 340 (345)
T COG3693 289 LNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDNYQPKPAYKAIAEV 340 (345)
T ss_pred hcccccceEEEeeeccCcccccCCccCcCCCCCcccCCCCCcchHHHHHHHH
Confidence 7777 999999999999988532 89999999999999999864
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=100.00 E-value=9.7e-55 Score=466.95 Aligned_cols=242 Identities=33% Similarity=0.593 Sum_probs=226.0
Q ss_pred cccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEE
Q 002447 613 LKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYD 692 (921)
Q Consensus 613 ~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WD 692 (921)
|||..+||++|+|||+.+|++++||+++||++|||+|+|+. +.|+|+..++++++++++.+||+++++||+|+|..||
T Consensus 1 ~kW~~~ep~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~--~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wd 78 (254)
T smart00633 1 MKWDSTEPSRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS--QTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWD 78 (254)
T ss_pred CCcccccCCCCccChHHHHHHHHHHHHCCCEEEEEEEeecc--cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 79999999999999999999999999999999999999995 6899999888899999999999999999999999999
Q ss_pred eeccccccC-------cccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeE
Q 002447 693 VNNEMLHGS-------FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGI 765 (921)
Q Consensus 693 VvNE~~~~~-------~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgI 765 (921)
|||||++.. +|.+.+|++|+..+|++||+++|+++|++|||+++.+. .+...|++++++|+++|+|||||
T Consensus 79 V~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~---~k~~~~~~~v~~l~~~g~~iDgi 155 (254)
T smart00633 79 VVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPN---AKRQAIYELVKKLKAKGVPIDGI 155 (254)
T ss_pred EeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCcc---HHHHHHHHHHHHHHHCCCcccee
Confidence 999998754 78899999999999999999999999999999998642 35678999999999999999999
Q ss_pred EeeccCCC--CCHHHHHHHHHHHhhcCCCEEEeeeccCCCCc-cchHHHHHHHHHHHHcCCCeEEEEEEccCCCCCCCC-
Q 002447 766 GIQGHIDS--PVGPIVCSALDNLGILGLPIWFTELDVSSINE-YVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSRD- 841 (921)
Q Consensus 766 G~Q~H~~~--p~~~~i~~~l~~~a~~glpi~iTE~dv~~~~e-~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~~~~~~- 841 (921)
|+|+|+.. |..+.+.+.|++|+++|+||+|||+|++..+. +.||++++++|+++++||+|.||++|||+|+.+|++
T Consensus 156 GlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~W~~~ 235 (254)
T smart00633 156 GLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYSWLDG 235 (254)
T ss_pred eeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCcccCC
Confidence 99999853 55678999999999999999999999997644 789999999999999999999999999999999987
Q ss_pred -CccccCCCCCcchHHHHH
Q 002447 842 -SAHLVNAEGDINEAGKKF 859 (921)
Q Consensus 842 -~~gL~d~d~~pKpa~~~~ 859 (921)
+++|||.|++|||||+++
T Consensus 236 ~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 236 GAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred CCceeECCCCCCChhhhcC
Confidence 789999999999999864
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.64 E-value=3.2e-14 Score=155.79 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=178.3
Q ss_pred HHHHHHH-hccceeecccccccccccccC-CcccchhhHHHHHHHHhcCCeeE--EeeE-Eecccc--cch-hhhcCCCH
Q 002447 595 DFVKFFT-KYFNWAVFGNELKWYWTESQQ-GNFNYKDADDMLDLCLNHNIQTR--GHCI-FWEVQA--TVQ-PWIQSLNK 666 (921)
Q Consensus 595 ~y~~~~~-~~Fn~~t~eN~~kW~~~ep~~-G~~~~~~~D~~v~~a~~~gi~vr--gH~L-~W~~~~--~~P-~W~~~~~~ 666 (921)
+..++++ ..+|+|+++ -|+.|.. |..+.+..-++.+.++++||++. .|-- .|..+. ..| .|.. ++.
T Consensus 28 d~~~ilk~~G~N~vRlR-----vwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~-~~~ 101 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLR-----VWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWAN-LSF 101 (332)
T ss_dssp -HHHHHHHTT--EEEEE-----E-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTS-SSH
T ss_pred CHHHHHHhcCCCeEEEE-----eccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCC-CCH
Confidence 4556665 599999964 3677877 99999999999999999999875 4421 455432 234 4643 588
Q ss_pred HHHHHHHHHHHHHHHHHcCC---eeeEEEeeccccccCcccccCCh------hHHHHHHHHHHhcCCCceEEEecCCCcC
Q 002447 667 NDLMTAVQNRLTGLLARYKG---KFRHYDVNNEMLHGSFYQDKLGK------DIRAYMFKTAHQLDLSATLFVNDYHVED 737 (921)
Q Consensus 667 ~~l~~~~~~~i~~v~~rY~g---~v~~WDVvNE~~~~~~~~~~lg~------~~~~~af~~ar~~dP~a~L~~Ndy~~~~ 737 (921)
++|.+++.+|.+.+++.++. .+..+.|-||...+-.|..--.. .++..+++++|+.+|++++.+.--+
T Consensus 102 ~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~--- 178 (332)
T PF07745_consen 102 DQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLAN--- 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECC---
Confidence 99999999999999988763 59999999999887766322221 4688999999999999999987322
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCC-CCHHHHHHHHHHHh-hcCCCEEEeeeccCCC------------
Q 002447 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS-PVGPIVCSALDNLG-ILGLPIWFTELDVSSI------------ 803 (921)
Q Consensus 738 ~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~-p~~~~i~~~l~~~a-~~glpi~iTE~dv~~~------------ 803 (921)
+. ....+..++..|+++|+++|.||+..+... .....++..|+.++ ++|+||+|+|++++..
T Consensus 179 ~~----~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~ 254 (332)
T PF07745_consen 179 GG----DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIG 254 (332)
T ss_dssp TT----SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSS
T ss_pred CC----chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCc
Confidence 22 235677788999999999999999888642 34677888888875 6899999999997643
Q ss_pred ----------CccchHHHHHHHHHHHHcCC--CeEEEEEEccCC-----------CCCCCCCccccCCCCCcchHHHHH
Q 002447 804 ----------NEYVRGEDLEVMLREAFAHP--AVEGIMLWGFWE-----------LFMSRDSAHLVNAEGDINEAGKKF 859 (921)
Q Consensus 804 ----------~e~~qa~~~~~~l~~~~s~p--~v~gi~~Wg~~d-----------~~~~~~~~gL~d~d~~pKpa~~~~ 859 (921)
+.+-|+++++++++.+.+.| ...||.+|.-.- +.+| .|.+|||.++++.|+.+++
T Consensus 255 ~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w-~n~~lFD~~g~~l~sl~~f 332 (332)
T PF07745_consen 255 ATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSW-DNQALFDFNGNALPSLDVF 332 (332)
T ss_dssp SSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSS-SBGSSB-TTSBB-GGGGHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCc-cccccCCCCCCCchHhhcC
Confidence 23569999999999999985 799999996522 2345 6789999999999998764
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.56 E-value=5.9e-14 Score=134.83 Aligned_cols=126 Identities=30% Similarity=0.409 Sum_probs=99.1
Q ss_pred cceEECCCCCC-CCCCceecCccceEEecccCCCCCcccCCCceEEEEeccccccccccccccCCccCCceEEEEEEEEE
Q 002447 31 ANLIVNNDFSM-GLHSWHPNCCHAFIASAESHYPEGTSANSVGNHAVVTNRKECWQGLEQDITDKVSPGFTYLVSASVGV 109 (921)
Q Consensus 31 ~nlv~n~~FE~-G~~~W~~~g~~~~v~~~~~~~~~~~~~~sG~~sl~vt~Rt~~w~G~~q~i~~~l~~g~tY~~S~~Vk~ 109 (921)
.|||.|++||+ ++.+|...++........ ..+|.++|+|.+|++.|+++.+.+...|++|++|+||+|||.
T Consensus 1 ~nli~N~~Fe~~~~~~W~~~~~~~~~~~~~--------~~~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~ 72 (131)
T PF02018_consen 1 GNLIKNGGFEDGGLSGWSFWGNSGASASVD--------NASGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKA 72 (131)
T ss_dssp GBSSSSTTSTTTSTTTEEEESSTTEEEEEE--------ECSSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred CCEEECCCccCCCCCCCEEccCCCEEEEEE--------cCCCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEe
Confidence 38999999999 679999988763222222 128999999999999999998888789999999999999999
Q ss_pred cCCCCcccEEEEEEEEeecCCCceeEEEEe-EEEecCccEEEEeEEEecCCCceEEEEEEcCC
Q 002447 110 SGPHQGSADVLATLKLEQRDSETSYLFIGK-TSVSKDNWENLEGTFSLSAVPDRIVFYLEGPA 171 (921)
Q Consensus 110 ~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~-~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~~ 171 (921)
+.+ ..|++.+... ++. .|..+.. ....+++|++++++||++.+...+.|||+.++
T Consensus 73 ~~~----~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~~~ 128 (131)
T PF02018_consen 73 DSG----GTVSVSLRDE--DGS-PYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEIGP 128 (131)
T ss_dssp SSS----EEEEEEEEES--STT-TEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEES-
T ss_pred CCC----CEEEEEEEEc--CCC-CcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEecC
Confidence 876 3555555543 222 5666654 66778999999999999988889999999843
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.56 E-value=9.2e-14 Score=133.49 Aligned_cols=125 Identities=25% Similarity=0.370 Sum_probs=98.4
Q ss_pred CceEeCCCcCC-CCCCeeeecceeEEecccCCCceecCCCceEEEEEeecCCCceeeeeeccccccCceEEEEEEEEEcc
Q 002447 204 ENIILNPKFED-GLNNWSGRGCKIVLHDSMADGKIVPLSGKVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFG 282 (921)
Q Consensus 204 ~~~v~n~~FE~-G~~gW~~~g~~~~~~~~~~~~~~~~~~G~~sl~vt~Rt~~w~G~~~~v~~~l~~g~~Y~~SawVk~~~ 282 (921)
.|+|.|++||+ ++.+|...++...... ....+|.++|+|++|+..|+++.+.+...|++|++|+||+|||...
T Consensus 1 ~nli~N~~Fe~~~~~~W~~~~~~~~~~~------~~~~~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~ 74 (131)
T PF02018_consen 1 GNLIKNGGFEDGGLSGWSFWGNSGASAS------VDNASGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADS 74 (131)
T ss_dssp GBSSSSTTSTTTSTTTEEEESSTTEEEE------EEECSSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESS
T ss_pred CCEEECCCccCCCCCCCEEccCCCEEEE------EEcCCCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCC
Confidence 37899999999 6899999987632221 1223899999999999999999988877899999999999999987
Q ss_pred CcccceEEEEEEEEEcCCCcccceEEEE-EEEcCCCcEEEEeEEEecCCCceEEEEEEcC
Q 002447 283 NNVTTATVQATLWVQTPNQRDQYIVIAN-VQATDKDWAQLHGKFLLNGSPARVVIYMEGP 341 (921)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~~~y~~i~~-~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~ 341 (921)
+ ..+.+.|. ..++. .|..+.. .....++|++++++||++.+...+.|+|+.+
T Consensus 75 ~----~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~~ 127 (131)
T PF02018_consen 75 G----GTVSVSLR--DEDGS-PYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEIG 127 (131)
T ss_dssp S----EEEEEEEE--ESSTT-TEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEES
T ss_pred C----CEEEEEEE--EcCCC-CcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEec
Confidence 5 44554444 43333 6666664 5567799999999999998888999999974
No 7
>PLN03089 hypothetical protein; Provisional
Probab=99.51 E-value=1.6e-11 Score=134.77 Aligned_cols=291 Identities=16% Similarity=0.212 Sum_probs=173.0
Q ss_pred CCcccceEECCCCCCCC----------------CCceecCccceEEecccCCCCC---cccCCCceEEEEeccccccccc
Q 002447 27 TSTAANLIVNNDFSMGL----------------HSWHPNCCHAFIASAESHYPEG---TSANSVGNHAVVTNRKECWQGL 87 (921)
Q Consensus 27 ~~~~~nlv~n~~FE~G~----------------~~W~~~g~~~~v~~~~~~~~~~---~~~~sG~~sl~vt~Rt~~w~G~ 87 (921)
.+...|||.||+||.|- .+|+-.| . |.-.+++-..+ -....|.+++.+ ++. ..+
T Consensus 23 ~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g-~--VeyI~s~~~~~~m~~~vP~G~~Av~L-G~e---~sI 95 (373)
T PLN03089 23 APVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISG-F--VEYISSGQKQGGMLLVVPEGAHAVRL-GNE---ASI 95 (373)
T ss_pred ccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecC-c--EEEEeCCCccCceeEECCCCchhhhc-CCC---ceE
Confidence 45667999999999982 3566544 1 33222211000 123468888877 443 458
Q ss_pred cccccCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEE-eEEEecCccEEEEeEEEecCCCceEEEE
Q 002447 88 EQDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIG-KTSVSKDNWENLEGTFSLSAVPDRIVFY 166 (921)
Q Consensus 88 ~q~i~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~-~~~~~~~~Wt~l~g~ft~~~~~~~~~ly 166 (921)
.|.+. +.+|+.|.++..+. .. -.+...|++.. ..... .+. +..-++++|..-+-.|+..+...++.++
T Consensus 96 ~Q~i~--t~~G~~Y~LTFs~a-r~-c~~~~~v~vsv----~~~~~---~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~ 164 (373)
T PLN03089 96 SQTLT--VTKGSYYSLTFSAA-RT-CAQDESLNVSV----PPESG---VLPLQTLYSSSGWDSYAWAFKAESDVVNLVFH 164 (373)
T ss_pred EEEEE--ccCCCEEEEEEEec-CC-CCCCceEEEEe----cCCCc---EEeeEEeccCCCcEEEEEEEEEecccEEEEEE
Confidence 88874 88999999999998 22 22333444332 11111 121 1223788999999999988877777765
Q ss_pred EEcCCCCcce--EEeeEEEecCCCCCCCCCCcccccCCCCceEeCCCcCCCCC-----------------------Ceee
Q 002447 167 LEGPAPGVDL--LIRSVVITCSSPSECENKSIGCNIAGDENIILNPKFEDGLN-----------------------NWSG 221 (921)
Q Consensus 167 ~e~~~~~~d~--yvDdv~l~~~~~~~~~~~~~~~~~~~~~~~v~n~~FE~G~~-----------------------gW~~ 221 (921)
-.+....... .||||.|+...++. +...|+|.|++||+|.. ||.-
T Consensus 165 ~~~~~~D~~CGPviD~VaIk~l~~P~----------p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i 234 (373)
T PLN03089 165 NPGVEEDPACGPLIDAVAIKTLFPPR----------PTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMI 234 (373)
T ss_pred CcccCCCCcccceeeeEEEeeccCCC----------ccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEE
Confidence 2221111122 49999999765332 23789999999999841 3432
Q ss_pred e-cceeEEecccCCCceecCCCceEEEEEeecCCCceeeeeeccccccCceEEEEEEEEEccCcccceEEEEEEEEEcCC
Q 002447 222 R-GCKIVLHDSMADGKIVPLSGKVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPN 300 (921)
Q Consensus 222 ~-g~~~~~~~~~~~~~~~~~~G~~sl~vt~Rt~~w~G~~~~v~~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~ 300 (921)
. ...+...++ ..-....|.+++.+.+-.. .++.|.+ ...+|++|++|..+--..+.+. ..+ .+....
T Consensus 235 ~s~~~V~yids---~h~~vp~G~~aveL~~g~e--~aI~Q~v--~T~~G~~Y~LsFs~g~a~~~c~-gs~--~V~a~a-- 302 (373)
T PLN03089 235 ESLKAVKYIDS---AHFSVPEGKRAVELVSGKE--SAIAQVV--RTVPGKSYNLSFTVGDANNGCH-GSM--MVEAFA-- 302 (373)
T ss_pred ecCccEEEEec---CcccCCCCceEEEeccCCc--ceEEEEE--EccCCCEEEEEEEEccCCCCCC-CcE--EEEEEe--
Confidence 1 111221111 1124457999998854333 3689999 5889999999999955443221 112 222211
Q ss_pred CcccceEEEEEEEcCCCcEEEEeEEEecCCCceEEEEE---EcCC-CCccEE---EeeEEecccc
Q 002447 301 QRDQYIVIANVQATDKDWAQLHGKFLLNGSPARVVIYM---EGPP-PGADIL---VNSLVVKHAE 358 (921)
Q Consensus 301 ~~~~y~~i~~~~~~~~~Wt~l~g~ft~~~~~~~~~ly~---e~~~-~~~~~y---iDdv~l~~~~ 358 (921)
+... ....-....+++|++.+-.|+..++.+++.+|- .+.. ....++ ||||+|....
T Consensus 303 g~~~-~~v~~~s~g~gg~~~~s~~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 303 GKDT-QKVPYESQGKGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred eccc-ceEEEecCCCcceEEEEEEEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEcc
Confidence 1111 111111224558999999999888877777644 2322 124456 9999998664
No 8
>PLN03089 hypothetical protein; Provisional
Probab=99.37 E-value=2e-10 Score=126.26 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=160.6
Q ss_pred CCceEeCCCcCCCC----------------CCeeeecceeEEecccC---CCceecCCCceEEEEEeecCCCceeeeeec
Q 002447 203 DENIILNPKFEDGL----------------NNWSGRGCKIVLHDSMA---DGKIVPLSGKVFASATERTQSWNGIQQEIT 263 (921)
Q Consensus 203 ~~~~v~n~~FE~G~----------------~gW~~~g~~~~~~~~~~---~~~~~~~~G~~sl~vt~Rt~~w~G~~~~v~ 263 (921)
..++|.|++||+|. .||.-.| .+...++-- +-......|.+++.+ |+. ..+.|.+
T Consensus 26 ~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g-~VeyI~s~~~~~~m~~~vP~G~~Av~L-G~e---~sI~Q~i- 99 (373)
T PLN03089 26 TDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISG-FVEYISSGQKQGGMLLVVPEGAHAVRL-GNE---ASISQTL- 99 (373)
T ss_pred cCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecC-cEEEEeCCCccCceeEECCCCchhhhc-CCC---ceEEEEE-
Confidence 57999999999983 2565433 222222100 000234578889887 443 4689999
Q ss_pred cccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEE-EEEEcCCCcEEEEeEEEecCCCceEEEEEEcCC
Q 002447 264 GRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIA-NVQATDKDWAQLHGKFLLNGSPARVVIYMEGPP 342 (921)
Q Consensus 264 ~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~-~~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~~ 342 (921)
.+.+|..|.+|.++. .. +.. ...+.+.+ ... ...+. .....+++|...+-.|+..++..++.++--+..
T Consensus 100 -~t~~G~~Y~LTFs~a-r~--c~~-~~~v~vsv--~~~---~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~~~~ 169 (373)
T PLN03089 100 -TVTKGSYYSLTFSAA-RT--CAQ-DESLNVSV--PPE---SGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPGVE 169 (373)
T ss_pred -EccCCCEEEEEEEec-CC--CCC-CceEEEEe--cCC---CcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECcccC
Confidence 488999999999997 22 222 11222222 111 11121 122477899999999998877777766522211
Q ss_pred --CCccEEEeeEEeccccCCCCCCCCcccCCCccceeeeCCCCCCCCC-----Cc------------------ccCCcee
Q 002447 343 --PGADILVNSLVVKHAEKIPPSPPPVIENPAFGVNIITNSELSDGTN-----GW------------------FPLGNCT 397 (921)
Q Consensus 343 --~~~~~yiDdv~l~~~~~~~~~~~p~~~~~~~~~~ii~n~~FE~g~~-----~W------------------~~~g~~~ 397 (921)
+..==.||||.|+....|. ....|+|.|++||+|.. .| .--....
T Consensus 170 ~D~~CGPviD~VaIk~l~~P~----------p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~ 239 (373)
T PLN03089 170 EDPACGPLIDAVAIKTLFPPR----------PTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKA 239 (373)
T ss_pred CCCcccceeeeEEEeeccCCC----------ccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCcc
Confidence 1122259999998764211 12459999999999842 12 1100001
Q ss_pred EEeecCCCCcCCCcccCCCCCCCCCCCcEE-EEEecccCCCCchhchhhhhccCcEEEEEEEEEEcCCC-CCceeEEEEE
Q 002447 398 LSIGTGSPHILPPMARDSLGPHEPLSGHYI-LVTNRTQTWMGPAQMITEKLKLFLTYQVAAWVRIGSGA-TGPQNVNIAL 475 (921)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l-~~~~Rt~~w~g~~~~l~~~l~~g~~Y~vsawvr~~~g~-~~~~~v~~~l 475 (921)
+...+. .-...+.+.+++ ++.+|.. .++|.+. ..+|+.|++|+++--.++. .++-.|....
T Consensus 240 V~yids------------~h~~vp~G~~aveL~~g~e~---aI~Q~v~--T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~a 302 (373)
T PLN03089 240 VKYIDS------------AHFSVPEGKRAVELVSGKES---AIAQVVR--TVPGKSYNLSFTVGDANNGCHGSMMVEAFA 302 (373)
T ss_pred EEEEec------------CcccCCCCceEEEeccCCcc---eEEEEEE--ccCCCEEEEEEEEccCCCCCCCcEEEEEEe
Confidence 111110 001234433444 4677774 4788886 7899999999998555432 2222222222
Q ss_pred EeCCe---EEecceEEEcCCCeEEEEEEEEeecCCCeEEEEE---eCCCC-CceEE---EeeeeeccC
Q 002447 476 GVDNQ---WVNGGQVEINDDRWHEIGGSFRIEKQPSKVMVYI---QGPAS-GIDVM---VAGLQIFPV 533 (921)
Q Consensus 476 ~~d~~---~~~~g~~~~~~~~W~~l~G~~~~~~~~~~~~iy~---e~~~~-~~~~~---vDd~~i~~~ 533 (921)
....+ |... -.+.|.+.+-.|+..+..+++.+|- ++... ...++ ||||++.+.
T Consensus 303 g~~~~~v~~~s~-----g~gg~~~~s~~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~ 365 (373)
T PLN03089 303 GKDTQKVPYESQ-----GKGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPV 365 (373)
T ss_pred ecccceEEEecC-----CCcceEEEEEEEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEc
Confidence 11111 1111 2568999999999888777777655 23211 12234 999999876
No 9
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.35 E-value=7.4e-11 Score=138.69 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=131.3
Q ss_pred ccceeeccccc--cccccc--ccCC--cccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC-----------CC
Q 002447 603 YFNWAVFGNEL--KWYWTE--SQQG--NFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS-----------LN 665 (921)
Q Consensus 603 ~Fn~~t~eN~~--kW~~~e--p~~G--~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~-----------~~ 665 (921)
+|..|++-|=+ ...... ...| .|||+..|+++|++.++||++--. | ...|.++.. ..
T Consensus 53 gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~ve-l-----~f~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 53 GFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVE-L-----GFMPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp --SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEE-E------SB-GGGBSS--EETTTTEE-S
T ss_pred CceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEE-E-----EechhhhcCCCCccccccCCcC
Confidence 89999987655 222221 2233 299999999999999999988422 2 234444321 12
Q ss_pred HHHHHHHHHHHHHHHHH----HcCC-eee--EEEeeccccccCcccccCChh---HHHHHHHHHHhcCCCceEEEecCCC
Q 002447 666 KNDLMTAVQNRLTGLLA----RYKG-KFR--HYDVNNEMLHGSFYQDKLGKD---IRAYMFKTAHQLDLSATLFVNDYHV 735 (921)
Q Consensus 666 ~~~l~~~~~~~i~~v~~----rY~g-~v~--~WDVvNE~~~~~~~~~~lg~~---~~~~af~~ar~~dP~a~L~~Ndy~~ 735 (921)
|+.-.+.|.+.|+.+++ ||+- .|. .|+|||||....||....-.+ +.+.+++.+|+++|.+++---.+..
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~~ 206 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFAW 206 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEET
T ss_pred CcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCccccc
Confidence 33334555555555554 5542 244 679999998877665322234 4678899999999999975321111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCC-----CC-----HHH-------HHHHHHHHh---hcCCCEEE
Q 002447 736 EDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS-----PV-----GPI-------VCSALDNLG---ILGLPIWF 795 (921)
Q Consensus 736 ~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~-----p~-----~~~-------i~~~l~~~a---~~glpi~i 795 (921)
. ...-+.++++.+.++++|+|-|.+|..... +. ... +....+.+. ..++|+++
T Consensus 207 --~-----~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~ 279 (486)
T PF01229_consen 207 --A-----YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLPLYI 279 (486)
T ss_dssp --T------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEE
T ss_pred --c-----HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceee
Confidence 0 112234566677788999999999765421 10 111 222222222 33678999
Q ss_pred eeeccCCCCc------cchHHHHHHHHHHHHcC--CCeEEEEEEccCCCC--------CCCCCccccCCCCCcchHHHHH
Q 002447 796 TELDVSSINE------YVRGEDLEVMLREAFAH--PAVEGIMLWGFWELF--------MSRDSAHLVNAEGDINEAGKKF 859 (921)
Q Consensus 796 TE~dv~~~~e------~~qa~~~~~~l~~~~s~--p~v~gi~~Wg~~d~~--------~~~~~~gL~d~d~~pKpa~~~~ 859 (921)
||........ ..+|.++.+ .++++ -.+.++.+|.|.|-. .....+||+..++-+||+|.++
T Consensus 280 tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KPa~~A~ 356 (486)
T PF01229_consen 280 TEWNASISPRNPQHDTCFKAAYIAK---NLLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKPAYYAF 356 (486)
T ss_dssp EEEES-SSTT-GGGGSHHHHHHHHH----HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-HHHHHH
T ss_pred cccccccCCCcchhccccchhhHHH---HHHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhccCCCchHHHHH
Confidence 9988765422 223444333 23332 247889999999842 1335799999999999999999
Q ss_pred HHHH
Q 002447 860 LNLK 863 (921)
Q Consensus 860 ~~l~ 863 (921)
.-|.
T Consensus 357 ~~L~ 360 (486)
T PF01229_consen 357 QLLN 360 (486)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8774
No 10
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.34 E-value=3.9e-11 Score=136.74 Aligned_cols=252 Identities=18% Similarity=0.268 Sum_probs=147.2
Q ss_pred HHHHHHhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC------------
Q 002447 596 FVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS------------ 663 (921)
Q Consensus 596 y~~~~~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~------------ 663 (921)
.+.+-+.+||.+++ ..+.|..+||++|+|||+..|++|+.|+++||+|. |... ....|.|+..
T Consensus 16 ~~~m~~~G~n~vri-~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~vi---L~~~-~~~~P~Wl~~~~Pe~~~~~~~g 90 (374)
T PF02449_consen 16 LRLMKEAGFNTVRI-GEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVI---LGTP-TAAPPAWLYDKYPEILPVDADG 90 (374)
T ss_dssp HHHHHHHT-SEEEE--CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEE---EEEC-TTTS-HHHHCCSGCCC-B-TTT
T ss_pred HHHHHHcCCCEEEE-EEechhhccCCCCeeecHHHHHHHHHHHhccCeEE---EEec-ccccccchhhhcccccccCCCC
Confidence 33444569999995 25899999999999999999999999999999985 2332 2457899753
Q ss_pred ------------CCHHHHHHHHHHHHHHHHHHcCCe--eeEEEeeccccc-c----------------------------
Q 002447 664 ------------LNKNDLMTAVQNRLTGLLARYKGK--FRHYDVNNEMLH-G---------------------------- 700 (921)
Q Consensus 664 ------------~~~~~l~~~~~~~i~~v~~rY~g~--v~~WDVvNE~~~-~---------------------------- 700 (921)
.+.+..++.+.+.++.++.||++. |..|.|.||+-. .
T Consensus 91 ~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aW 170 (374)
T PF02449_consen 91 RRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAW 170 (374)
T ss_dssp SBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred CcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 123467888999999999999974 999999999732 0
Q ss_pred --Cc-------ccccC-----C----h---------------hHHHHHHHHHHhcCCCceEEEecCCC-cCCCCCCCCHH
Q 002447 701 --SF-------YQDKL-----G----K---------------DIRAYMFKTAHQLDLSATLFVNDYHV-EDGCDPRSSPE 746 (921)
Q Consensus 701 --~~-------~~~~l-----g----~---------------~~~~~af~~ar~~dP~a~L~~Ndy~~-~~~~~~~~~~~ 746 (921)
.+ |.++. + + +++....+.+|+.+|+..+..|-+.. .. ..
T Consensus 171 gt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~-------~~ 243 (374)
T PF02449_consen 171 GTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFN-------GI 243 (374)
T ss_dssp TTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT----------SS
T ss_pred cCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccC-------cC
Confidence 12 22211 0 0 23455667889999999998886543 11 11
Q ss_pred HHHHHHHHHHHCCCceeeEEeeccCC-----CCC-HHHHHHHHHHHh--hcCCCEEEeeeccCCC-----CccchHHHHH
Q 002447 747 KYIEHILNLQEQGAPVGGIGIQGHID-----SPV-GPIVCSALDNLG--ILGLPIWFTELDVSSI-----NEYVRGEDLE 813 (921)
Q Consensus 747 ~~~~~i~~l~~~g~piDgIG~Q~H~~-----~p~-~~~i~~~l~~~a--~~glpi~iTE~dv~~~-----~e~~qa~~~~ 813 (921)
.+.++.+ .+|.+|+..+.. ... ...+.-.++.+. ..|+|.+++|.-.... +.......++
T Consensus 244 d~~~~a~-------~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~ 316 (374)
T PF02449_consen 244 DYFKWAK-------YLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELR 316 (374)
T ss_dssp -HHHHGG-------GSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHH
T ss_pred CHHHHHh-------hCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHH
Confidence 2332221 368888876654 111 112222333332 5699999999955421 1222334566
Q ss_pred HHHHHHHcCCCeEEEEEEccCCCC-CCC-CCccccCCCC-CcchHHHHHHHHHHHhc
Q 002447 814 VMLREAFAHPAVEGIMLWGFWELF-MSR-DSAHLVNAEG-DINEAGKKFLNLKQEWL 867 (921)
Q Consensus 814 ~~l~~~~s~p~v~gi~~Wg~~d~~-~~~-~~~gL~d~d~-~pKpa~~~~~~l~~~w~ 867 (921)
...-.+++| +.++|.+|.+.... ..+ .++||++.|| .|.+.|+.+++|-++.+
T Consensus 317 ~~~~~~~A~-Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 317 LWSWQAIAH-GADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp HHHHHHHHT-T-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 666677788 89999999986642 333 4899999999 99999999999866643
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=99.28 E-value=3.5e-10 Score=130.31 Aligned_cols=249 Identities=15% Similarity=0.108 Sum_probs=163.9
Q ss_pred Hhccceeeccccccccccccc-CCccc---chhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC---CCHHHHHHHH
Q 002447 601 TKYFNWAVFGNELKWYWTESQ-QGNFN---YKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS---LNKNDLMTAV 673 (921)
Q Consensus 601 ~~~Fn~~t~eN~~kW~~~ep~-~G~~~---~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~---~~~~~l~~~~ 673 (921)
.-+||..++ .+.|..++|. +|.+| ++..|++++.|+++||++.- + +.| -..|.|+.. +..++..+.+
T Consensus 65 ~~G~~~~R~--si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~piv-t-L~H--fd~P~~l~~~gGw~~~~~~~~f 138 (427)
T TIGR03356 65 ELGVDAYRF--SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFV-T-LYH--WDLPQALEDRGGWLNRDTAEWF 138 (427)
T ss_pred HcCCCeEEc--ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEE-e-ecc--CCccHHHHhcCCCCChHHHHHH
Confidence 459999998 6999999999 78887 46789999999999998863 2 234 237888752 2235667899
Q ss_pred HHHHHHHHHHcCCeeeEEEeeccccccCc-------cccc-CC-h-h---------HHHHHHHHHHhcCCCceEEEecCC
Q 002447 674 QNRLTGLLARYKGKFRHYDVNNEMLHGSF-------YQDK-LG-K-D---------IRAYMFKTAHQLDLSATLFVNDYH 734 (921)
Q Consensus 674 ~~~i~~v~~rY~g~v~~WDVvNE~~~~~~-------~~~~-lg-~-~---------~~~~af~~ar~~dP~a~L~~Ndy~ 734 (921)
.+|.+.+++||+++|..|..+|||+...+ +... .. . . ...+|+++.|+..|++++-+--..
T Consensus 139 ~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~ 218 (427)
T TIGR03356 139 AEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNL 218 (427)
T ss_pred HHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999999999974321 1110 11 1 1 135788889999999887653211
Q ss_pred -CcCCCCCCCC--H-----HHH------------------HHHHH----------HHHHCCCceeeEEeeccCCC-----
Q 002447 735 -VEDGCDPRSS--P-----EKY------------------IEHIL----------NLQEQGAPVGGIGIQGHIDS----- 773 (921)
Q Consensus 735 -~~~~~~~~~~--~-----~~~------------------~~~i~----------~l~~~g~piDgIG~Q~H~~~----- 773 (921)
...+...... . ..+ .+.+. +++ +| .+|=||++.+...
T Consensus 219 ~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l-~~-~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 219 TPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGDAPFVQDGDLETI-AQ-PLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhccCCCCCHHHHHHh-cC-CCCEEEEeccccceeccC
Confidence 1111100000 0 000 00110 111 23 4699999876421
Q ss_pred --------------CC--------HHHHHHHHHHHh-hcCC-CEEEeeeccCCCC--------ccchHHHHHHHHHHHH-
Q 002447 774 --------------PV--------GPIVCSALDNLG-ILGL-PIWFTELDVSSIN--------EYVRGEDLEVMLREAF- 820 (921)
Q Consensus 774 --------------p~--------~~~i~~~l~~~a-~~gl-pi~iTE~dv~~~~--------e~~qa~~~~~~l~~~~- 820 (921)
|. +..|+..|..+. ++++ ||+|||-++...+ +..+.+++++.|..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~ 376 (427)
T TIGR03356 297 PGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALAR 376 (427)
T ss_pred CCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHH
Confidence 10 235888888764 6787 7999999987432 3456777776655443
Q ss_pred --c-CCCeEEEEEEccCCCCCCC----CCccccCCCCC-----cchHHH
Q 002447 821 --A-HPAVEGIMLWGFWELFMSR----DSAHLVNAEGD-----INEAGK 857 (921)
Q Consensus 821 --s-~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d~~-----pKpa~~ 857 (921)
+ --.|.|++.|.+.|...|. ..+||+.-|+. ||+++.
T Consensus 377 Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~ 425 (427)
T TIGR03356 377 AIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAK 425 (427)
T ss_pred HHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceee
Confidence 2 3369999999999997773 57899877754 666543
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.18 E-value=2.1e-10 Score=133.72 Aligned_cols=260 Identities=15% Similarity=0.176 Sum_probs=162.9
Q ss_pred HHHh-ccceeeccccccccccccc--CCcccc---hhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC---CCHHHH
Q 002447 599 FFTK-YFNWAVFGNELKWYWTESQ--QGNFNY---KDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS---LNKNDL 669 (921)
Q Consensus 599 ~~~~-~Fn~~t~eN~~kW~~~ep~--~G~~~~---~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~---~~~~~l 669 (921)
++++ .+|.-++ .+.|..++|. +|++|- ...+++++-|+++||++.- | ++| -.+|.|+.. +...+.
T Consensus 66 l~~~lg~~~yRf--si~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v-t-L~H--~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 66 LMKELGVNAYRF--SISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV-T-LYH--FDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHT-SEEEE--E--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE-E-EES--S--BHHHHHHTGGGSTHH
T ss_pred HHHhhccceeee--ecchhheeecccccccCHhHhhhhHHHHHHHHhhccceee-e-eee--cccccceeecccccCHHH
Confidence 4443 8888887 6999999999 699884 4578999999999999873 3 345 347999864 223466
Q ss_pred HHHHHHHHHHHHHHcCCeeeEEEeeccccccCc-------cccc-CC-hh----------HHHHHHHHHHhcCCCceEEE
Q 002447 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSF-------YQDK-LG-KD----------IRAYMFKTAHQLDLSATLFV 730 (921)
Q Consensus 670 ~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~-------~~~~-lg-~~----------~~~~af~~ar~~dP~a~L~~ 730 (921)
.+.+.+|++.+++||+++|..|=.+|||..... |... .. .+ ....|++..|+..|++++-+
T Consensus 140 ~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi 219 (455)
T PF00232_consen 140 VDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGI 219 (455)
T ss_dssp HHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEec
Confidence 789999999999999999999999999974211 1110 01 11 13578889999999999854
Q ss_pred -ecCCCcCCCCCCCCH--------HHHH-----H----------HHHHHHHC--------------CCceeeEEeeccCC
Q 002447 731 -NDYHVEDGCDPRSSP--------EKYI-----E----------HILNLQEQ--------------GAPVGGIGIQGHID 772 (921)
Q Consensus 731 -Ndy~~~~~~~~~~~~--------~~~~-----~----------~i~~l~~~--------------g~piDgIG~Q~H~~ 772 (921)
..+....+.+..... ..+. + +...+..+ ..++|=||++.+..
T Consensus 220 ~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~ 299 (455)
T PF00232_consen 220 ALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTS 299 (455)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEE
T ss_pred cccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccc
Confidence 222211111100000 0110 0 11112222 12589999987731
Q ss_pred -----CC--------------------C-----------HHHHHHHHHHH-hhcC-CCEEEeeeccCCCCc--------c
Q 002447 773 -----SP--------------------V-----------GPIVCSALDNL-GILG-LPIWFTELDVSSINE--------Y 806 (921)
Q Consensus 773 -----~p--------------------~-----------~~~i~~~l~~~-a~~g-lpi~iTE~dv~~~~e--------~ 806 (921)
.+ . +..|+..|..+ .+.+ +||.|||-++...++ .
T Consensus 300 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~ 379 (455)
T PF00232_consen 300 RYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDD 379 (455)
T ss_dssp EEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHH
T ss_pred eeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcH
Confidence 01 0 23589999888 4667 999999999986543 3
Q ss_pred chHHHHHHHHH----HHHcCCCeEEEEEEccCCCCCCC----CCccccCCC------CCcchHHHHHHHHHH
Q 002447 807 VRGEDLEVMLR----EAFAHPAVEGIMLWGFWELFMSR----DSAHLVNAE------GDINEAGKKFLNLKQ 864 (921)
Q Consensus 807 ~qa~~~~~~l~----~~~s~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d------~~pKpa~~~~~~l~~ 864 (921)
.+-+++++.|. +...--.|.|++.|.|.|...|. ..+||+.-| .+||+++..|+++.+
T Consensus 380 ~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 380 YRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 45566665444 44344579999999999998774 579999888 799999999999864
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.16 E-value=2.4e-09 Score=116.89 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=141.8
Q ss_pred HHHHHHHhccceeeccccccccccc-ccCCc----ccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCC----C
Q 002447 595 DFVKFFTKYFNWAVFGNELKWYWTE-SQQGN----FNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL----N 665 (921)
Q Consensus 595 ~y~~~~~~~Fn~~t~eN~~kW~~~e-p~~G~----~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~----~ 665 (921)
.+..+-..+||.|++ .+.|..++ +.++. --+...|++|++|+++||.|. |.+|. .|.|.... .
T Consensus 26 ~~~~~~~~G~n~VRi--~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vi---ld~h~---~~~w~~~~~~~~~ 97 (281)
T PF00150_consen 26 DFDQLKALGFNTVRI--PVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVI---LDLHN---APGWANGGDGYGN 97 (281)
T ss_dssp HHHHHHHTTESEEEE--EEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEE---EEEEE---STTCSSSTSTTTT
T ss_pred HHHHHHHCCCCEEEe--CCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEE---EEecc---Ccccccccccccc
Confidence 344444569999997 47886555 55542 235678999999999999884 45553 37784321 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--eeeEEEeeccccccCc---ccccCC---hhHHHHHHHHHHhcCCCceEEEecCCCcC
Q 002447 666 KNDLMTAVQNRLTGLLARYKG--KFRHYDVNNEMLHGSF---YQDKLG---KDIRAYMFKTAHQLDLSATLFVNDYHVED 737 (921)
Q Consensus 666 ~~~l~~~~~~~i~~v~~rY~g--~v~~WDVvNE~~~~~~---~~~~lg---~~~~~~af~~ar~~dP~a~L~~Ndy~~~~ 737 (921)
.....+.+.++++.+++||++ .|..||++|||..... |..... .+++..+++.+|+++|+..+++.+.....
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~ 177 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGA 177 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCcccc
Confidence 445667788899999999964 6889999999987532 311111 25678999999999999999998732110
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCC---------------HHHHHHHHHHHhhcCCCEEEeeeccCC
Q 002447 738 GCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPV---------------GPIVCSALDNLGILGLPIWFTELDVSS 802 (921)
Q Consensus 738 ~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~---------------~~~i~~~l~~~a~~glpi~iTE~dv~~ 802 (921)
...... ..+-......+.+.+|.+..... ...+...+..+...|+||+|+|+++..
T Consensus 178 ------~~~~~~---~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~ 248 (281)
T PF00150_consen 178 ------DPDGAA---ADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKKNGKPVVVGEFGWSN 248 (281)
T ss_dssp ------BHHHHH---HHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESST
T ss_pred ------ccchhh---hcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcC
Confidence 011101 11101112456666655542211 123555666667789999999999985
Q ss_pred CCccchHHHHHHHHHHHHcCCCeEEEEEEccCC
Q 002447 803 INEYVRGEDLEVMLREAFAHPAVEGIMLWGFWE 835 (921)
Q Consensus 803 ~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d 835 (921)
.+.....++...++..+.++ .+ |.++|.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~~-g~~~W~~~~ 279 (281)
T PF00150_consen 249 NDGNGSTDYADAWLDYLEQN-GI-GWIYWSWKP 279 (281)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-TC-EEEECEESS
T ss_pred CCCCcCHHHHHHHHHHHHHC-CC-eEEEEecCC
Confidence 54333344555566666665 44 777888764
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.10 E-value=8.6e-09 Score=124.89 Aligned_cols=230 Identities=17% Similarity=0.128 Sum_probs=150.6
Q ss_pred HHH-hccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc-----------ccchhhhcCCCH
Q 002447 599 FFT-KYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ-----------ATVQPWIQSLNK 666 (921)
Q Consensus 599 ~~~-~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~-----------~~~P~W~~~~~~ 666 (921)
+++ .+||.++.- .+....++++.|.+.||.|.--.-.|... ...|.|-.....
T Consensus 321 l~K~~G~N~vR~s---------------h~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (604)
T PRK10150 321 LMKWIGANSFRTS---------------HYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVN 385 (604)
T ss_pred HHHHCCCCEEEec---------------cCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccc
Confidence 344 499999951 12235689999999999665332222100 001122111111
Q ss_pred HHHHHHHHHHHHHHHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCC
Q 002447 667 NDLMTAVQNRLTGLLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSS 744 (921)
Q Consensus 667 ~~l~~~~~~~i~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~ 744 (921)
++.++...+.+++++.|++. .|..|-+-||+.... .-..++++..++++|+.||.-.+-+..+.. ....
T Consensus 386 ~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~~-~~~~---- 456 (604)
T PRK10150 386 GETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVMF-ATPD---- 456 (604)
T ss_pred hhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEeccc-CCcc----
Confidence 34567788999999999996 599999999974321 112367889999999999985555433210 0000
Q ss_pred HHHHHHHHHHHHHCCCceeeEEeeccCC----CCCHH----HHHHHHHHHh-hcCCCEEEeeeccCC-----------CC
Q 002447 745 PEKYIEHILNLQEQGAPVGGIGIQGHID----SPVGP----IVCSALDNLG-ILGLPIWFTELDVSS-----------IN 804 (921)
Q Consensus 745 ~~~~~~~i~~l~~~g~piDgIG~Q~H~~----~p~~~----~i~~~l~~~a-~~glpi~iTE~dv~~-----------~~ 804 (921)
...+ ....|.+|++.++. .+... .+...|+++. .+++|+.+||++..+ .+
T Consensus 457 ~~~~----------~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ 526 (604)
T PRK10150 457 TDTV----------SDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWS 526 (604)
T ss_pred cccc----------cCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCC
Confidence 0000 11379999875543 11222 2344455543 348999999998532 25
Q ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEEccCC----CCCCC---CCccccCCCCCcchHHHHHHHH
Q 002447 805 EYVRGEDLEVMLREAFAHPAVEGIMLWGFWE----LFMSR---DSAHLVNAEGDINEAGKKFLNL 862 (921)
Q Consensus 805 e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d----~~~~~---~~~gL~d~d~~pKpa~~~~~~l 862 (921)
|+.|+++++..++...++|.+.|-.+|.+.| ...++ ...||++.|++|||++..++++
T Consensus 527 ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~ 591 (604)
T PRK10150 527 EEYQCAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFLLKKR 591 (604)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHHHHHH
Confidence 7889999999999999999999999999999 22233 4789999999999999766654
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.9e-08 Score=103.16 Aligned_cols=275 Identities=16% Similarity=0.136 Sum_probs=196.0
Q ss_pred eecCCCCeeeccCCC-------------CCCChHHHHHHH-hccceeeccccccccccccc--------CCcccchhhHH
Q 002447 575 QTQNSFPIGSCINRS-------------QIDNEDFVKFFT-KYFNWAVFGNELKWYWTESQ--------QGNFNYKDADD 632 (921)
Q Consensus 575 ~~~~~F~fG~a~~~~-------------~~~~~~y~~~~~-~~Fn~~t~eN~~kW~~~ep~--------~G~~~~~~~D~ 632 (921)
..+.+|.+|+-|+.- .-..++..++++ ...|+++++ -| ..|. -|.-|...+-+
T Consensus 34 ~~~~dFikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlR---vw--ndP~dsngn~yggGnnD~~k~ie 108 (403)
T COG3867 34 NSPNDFIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLR---VW--NDPYDSNGNGYGGGNNDLKKAIE 108 (403)
T ss_pred CChHHhhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEE---Ee--cCCccCCCCccCCCcchHHHHHH
Confidence 356777777765421 111234455665 589999974 23 2332 24556777788
Q ss_pred HHHHHHhcCCeeE--EeeE-Eecccc--cch-hhhcCCCHHHHHHHHHHHHHHHHHHcCC---eeeEEEeeccccccCcc
Q 002447 633 MLDLCLNHNIQTR--GHCI-FWEVQA--TVQ-PWIQSLNKNDLMTAVQNRLTGLLARYKG---KFRHYDVNNEMLHGSFY 703 (921)
Q Consensus 633 ~v~~a~~~gi~vr--gH~L-~W~~~~--~~P-~W~~~~~~~~l~~~~~~~i~~v~~rY~g---~v~~WDVvNE~~~~~~~ 703 (921)
|.+.|+.+||+|. .|.- +|..+. ..| .|.. ++.+.+++++.+|.+.++..++. .+..-.|=||...+-.|
T Consensus 109 iakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~-l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflw 187 (403)
T COG3867 109 IAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN-LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLW 187 (403)
T ss_pred HHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh-cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceec
Confidence 9999999999985 4543 565542 234 5754 78899999999999999998874 48888999999776556
Q ss_pred cccCCh------hHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCC-CCCH
Q 002447 704 QDKLGK------DIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHID-SPVG 776 (921)
Q Consensus 704 ~~~lg~------~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~-~p~~ 776 (921)
..--|. .++..+.+++|+.+|+.++.+-=-+-+ +...|..+.++|-++++++|.||+..+.. ....
T Consensus 188 p~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~-------~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl 260 (403)
T COG3867 188 PDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGE-------NNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTL 260 (403)
T ss_pred cCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCC-------CCchhhHHHHHHHHcCCCceEEeeeccccccCcH
Confidence 543332 457889999999999999988532211 22456677899999999999999987753 2345
Q ss_pred HHHHHHHHHHh-hcCCCEEEeeeccCC-------------C---------CccchHHHHHHHHHHHHcCCC--eEEEEEE
Q 002447 777 PIVCSALDNLG-ILGLPIWFTELDVSS-------------I---------NEYVRGEDLEVMLREAFAHPA--VEGIMLW 831 (921)
Q Consensus 777 ~~i~~~l~~~a-~~glpi~iTE~dv~~-------------~---------~e~~qa~~~~~~l~~~~s~p~--v~gi~~W 831 (921)
..+...|+..+ ++++.+.|-|....- . +-+-||.+++++++.....|. -.||..|
T Consensus 261 ~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYW 340 (403)
T COG3867 261 NNLTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYW 340 (403)
T ss_pred HHHHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEe
Confidence 67888888876 579999999987620 0 125689999999999988875 5788888
Q ss_pred cc-----CCCCCC------------------CCCccccCCCCCcchHHHHHHHH
Q 002447 832 GF-----WELFMS------------------RDSAHLVNAEGDINEAGKKFLNL 862 (921)
Q Consensus 832 g~-----~d~~~~------------------~~~~gL~d~d~~pKpa~~~~~~l 862 (921)
.- ..+..| ..|-.|||-+|.|.|+..+++.+
T Consensus 341 Ep~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~vFn~v 394 (403)
T COG3867 341 EPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLNVFNYV 394 (403)
T ss_pred cccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchhhhhhh
Confidence 64 133333 24778999999999999888654
No 16
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=99.04 E-value=5e-09 Score=111.62 Aligned_cols=167 Identities=18% Similarity=0.152 Sum_probs=112.1
Q ss_pred CCeeeEEEeeccccccCcccccCChh-HHHHHHHHHHh-cCCCceEEEecCCCcCC--CCCCCCHHHHHHHHHHHHHCCC
Q 002447 685 KGKFRHYDVNNEMLHGSFYQDKLGKD-IRAYMFKTAHQ-LDLSATLFVNDYHVEDG--CDPRSSPEKYIEHILNLQEQGA 760 (921)
Q Consensus 685 ~g~v~~WDVvNE~~~~~~~~~~lg~~-~~~~af~~ar~-~dP~a~L~~Ndy~~~~~--~~~~~~~~~~~~~i~~l~~~g~ 760 (921)
+..+.++-.+|||.... ...+.++ ++..+-+.... .++.++|.--....... .........|+ +.+ .+|.
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~~~~~l~sPa~~~~~~~~~~g~~Wl~~F~---~~~-~~~~ 136 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRSPGVKLGSPAVAFTNGGTPGGLDWLSQFL---SAC-ARGC 136 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhcCCcEEECCeecccCCCCCCccHHHHHHH---Hhc-ccCC
Confidence 66799999999998754 2234443 33333332222 14788887443321111 00111122222 221 1477
Q ss_pred ceeeEEeeccCCCCCHHHHHHHHHHH-hhcCCCEEEeeeccC----CCCccchHHHHHHHHHHHHcCCCeEEEEEEccCC
Q 002447 761 PVGGIGIQGHIDSPVGPIVCSALDNL-GILGLPIWFTELDVS----SINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWE 835 (921)
Q Consensus 761 piDgIG~Q~H~~~p~~~~i~~~l~~~-a~~glpi~iTE~dv~----~~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d 835 (921)
.+|.|.+|.+ ......+...|+.+ ..+|+||||||+... ..+++.|++++++++..+-+.|.|+++.|+++.+
T Consensus 137 ~~D~iavH~Y--~~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF~~~~ 214 (239)
T PF11790_consen 137 RVDFIAVHWY--GGDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWFGFMN 214 (239)
T ss_pred CccEEEEecC--CcCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEeccccc
Confidence 8999999666 23356678888887 678999999999864 3456789999999999999999999999999655
Q ss_pred CC-CCCCCccccCCCCCcchHHHHH
Q 002447 836 LF-MSRDSAHLVNAEGDINEAGKKF 859 (921)
Q Consensus 836 ~~-~~~~~~gL~d~d~~pKpa~~~~ 859 (921)
.. ....+..|++.+|++.|++.+|
T Consensus 215 ~~~~~~~~~~L~~~~G~lt~lG~~Y 239 (239)
T PF11790_consen 215 DGSGVNPNSALLDADGSLTPLGKAY 239 (239)
T ss_pred ccCCCccccccccCCCCcChhhhhC
Confidence 53 3446789999999999998764
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.03 E-value=4.5e-08 Score=113.78 Aligned_cols=261 Identities=12% Similarity=0.086 Sum_probs=166.9
Q ss_pred HHHH-hccceeeccccccccccccc--CCcc---cchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHH
Q 002447 598 KFFT-KYFNWAVFGNELKWYWTESQ--QGNF---NYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKN 667 (921)
Q Consensus 598 ~~~~-~~Fn~~t~eN~~kW~~~ep~--~G~~---~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~ 667 (921)
++++ -.||..++ .+.|..++|. .+.+ .++..|++++.|+++||++.- | +.| -..|.|+.. +-..
T Consensus 78 ~l~~~lG~~~yR~--si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V-t-L~H--~~~P~~l~~~~GGW~~~ 151 (474)
T PRK09852 78 ALMAEMGFKVFRT--SIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV-T-LCH--FDVPMHLVTEYGSWRNR 151 (474)
T ss_pred HHHHHcCCCeEEe--eceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-eeC--CCCCHHHHHhcCCCCCH
Confidence 3444 39999998 6999999997 2233 345679999999999998752 2 344 347999853 2335
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeeccccccC---cc-cc---cCC----h-hH---------HHHHHHHHHhcCCCc
Q 002447 668 DLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS---FY-QD---KLG----K-DI---------RAYMFKTAHQLDLSA 726 (921)
Q Consensus 668 ~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~---~~-~~---~lg----~-~~---------~~~af~~ar~~dP~a 726 (921)
+..+.+.+|.+.+++||+++|..|=.+|||+.-. +. .. ..| . -| .+.|+++.|+..|+.
T Consensus 152 ~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~ 231 (474)
T PRK09852 152 KMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQN 231 (474)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6778999999999999999999999999997321 11 00 111 1 11 246778888888987
Q ss_pred eEEEec-CCCcCCCC--CCCCHHH----H-----HH----------HHHHHHHCC--------------CceeeEEeecc
Q 002447 727 TLFVND-YHVEDGCD--PRSSPEK----Y-----IE----------HILNLQEQG--------------APVGGIGIQGH 770 (921)
Q Consensus 727 ~L~~Nd-y~~~~~~~--~~~~~~~----~-----~~----------~i~~l~~~g--------------~piDgIG~Q~H 770 (921)
++-+.- +....+.. +...... + ++ +.+.|.+++ -++|=||++.+
T Consensus 232 ~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyY 311 (474)
T PRK09852 232 QVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYY 311 (474)
T ss_pred eEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccc
Confidence 764321 11111110 0000000 0 00 112222222 13588887654
Q ss_pred CC----------------------CC-----------CHHHHHHHHHHH-hhcCCCEEEeeeccCCCC---------ccc
Q 002447 771 ID----------------------SP-----------VGPIVCSALDNL-GILGLPIWFTELDVSSIN---------EYV 807 (921)
Q Consensus 771 ~~----------------------~p-----------~~~~i~~~l~~~-a~~glpi~iTE~dv~~~~---------e~~ 807 (921)
.. .| .+..|+..|.++ .+.++||+|||-++...+ +..
T Consensus 312 t~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~ 391 (474)
T PRK09852 312 ASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDY 391 (474)
T ss_pred cCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHH
Confidence 21 01 023478888876 468999999999987432 233
Q ss_pred hHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCCC-----CCccccCCCCC----------cchHHHHHHHHHH
Q 002447 808 RGEDLEVMLREAF----AHPAVEGIMLWGFWELFMSR-----DSAHLVNAEGD----------INEAGKKFLNLKQ 864 (921)
Q Consensus 808 qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~~-----~~~gL~d~d~~----------pKpa~~~~~~l~~ 864 (921)
+-+++++.|..+. .--.|.|.+.|.+.|...|. .-+||+.-|+. ||+++..|+++++
T Consensus 392 Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 392 RISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 5566666554432 23469999999999997774 34888766654 8999999999875
No 18
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.03 E-value=4.7e-08 Score=114.06 Aligned_cols=261 Identities=12% Similarity=0.098 Sum_probs=166.8
Q ss_pred HHHHh-ccceeeccccccccccccc-CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC---CCHHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ-QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS---LNKNDL 669 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~-~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~---~~~~~l 669 (921)
+++++ .+|.-++ .+.|..|+|. .|.+|-. ..+++++-|+++||++.- | ++| -.+|.|+.. +-..+.
T Consensus 61 ~L~~~lG~~~yRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V-T-L~H--~dlP~~L~~~GGW~n~~~ 134 (469)
T PRK13511 61 KLAEEFGVNGIRI--SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV-T-LHH--FDTPEALHSNGDWLNREN 134 (469)
T ss_pred HHHHHhCCCEEEe--eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-E-ecC--CCCcHHHHHcCCCCCHHH
Confidence 34443 8888887 6999999997 3555443 468999999999998863 3 445 248999864 223467
Q ss_pred HHHHHHHHHHHHHHcCCeeeEEEeeccccccC-------ccccc-CCh--h-H---------HHHHHHHHHhcCCCceEE
Q 002447 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS-------FYQDK-LGK--D-I---------RAYMFKTAHQLDLSATLF 729 (921)
Q Consensus 670 ~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~-lg~--~-~---------~~~af~~ar~~dP~a~L~ 729 (921)
.+.+.+|.+.+++||++ |..|=-+|||+... .+... .+. + | ..+|+++.|+..|+.++-
T Consensus 135 v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IG 213 (469)
T PRK13511 135 IDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIG 213 (469)
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 78999999999999999 99999999996421 11111 011 1 1 246778888888887754
Q ss_pred Ee-cCCCcCCCC---CCC-----------------------CHHHHHHHHH-----------------HHHHCC-Cceee
Q 002447 730 VN-DYHVEDGCD---PRS-----------------------SPEKYIEHIL-----------------NLQEQG-APVGG 764 (921)
Q Consensus 730 ~N-dy~~~~~~~---~~~-----------------------~~~~~~~~i~-----------------~l~~~g-~piDg 764 (921)
+. .+....+.. +.. -+..+.+.+. +++... .++|=
T Consensus 214 i~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DF 293 (469)
T PRK13511 214 VVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDF 293 (469)
T ss_pred EEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCE
Confidence 32 111111110 000 0001111111 111121 25788
Q ss_pred EEeeccCCC--------------------------------------C--------CHHHHHHHHHHHh-hcCC--CEEE
Q 002447 765 IGIQGHIDS--------------------------------------P--------VGPIVCSALDNLG-ILGL--PIWF 795 (921)
Q Consensus 765 IG~Q~H~~~--------------------------------------p--------~~~~i~~~l~~~a-~~gl--pi~i 795 (921)
||++.+... | .+..|+..|..+. +++. ||+|
T Consensus 294 iGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~I 373 (469)
T PRK13511 294 LGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYI 373 (469)
T ss_pred EEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEE
Confidence 888765210 0 0124778887764 5675 7999
Q ss_pred eeeccCCCC---------ccchHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCCC----CCccccCCCC-----Ccc
Q 002447 796 TELDVSSIN---------EYVRGEDLEVMLREAF----AHPAVEGIMLWGFWELFMSR----DSAHLVNAEG-----DIN 853 (921)
Q Consensus 796 TE~dv~~~~---------e~~qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d~-----~pK 853 (921)
||-++...+ +..+.+++++.|..+. .--.|.|.+.|.|.|...|. .-+||+.-|+ .||
T Consensus 374 TENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK 453 (469)
T PRK13511 374 TENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPK 453 (469)
T ss_pred ecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccc
Confidence 999987332 2346667776555432 23469999999999997773 5688887765 489
Q ss_pred hHHHHHHHHHHH
Q 002447 854 EAGKKFLNLKQE 865 (921)
Q Consensus 854 pa~~~~~~l~~~ 865 (921)
+++..++++.+.
T Consensus 454 ~S~~wy~~~i~~ 465 (469)
T PRK13511 454 KSAYWYKKLAET 465 (469)
T ss_pred cHHHHHHHHHHh
Confidence 999999998643
No 19
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.99 E-value=6.6e-08 Score=112.61 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=166.9
Q ss_pred HHHHh-ccceeeccccccccccccc--CCccc---chhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ--QGNFN---YKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKN 667 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~--~G~~~---~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~ 667 (921)
+++++ .||..++ .+.|..|+|. .|.+| ++..+++++.|+++||++.- | ++| -..|.|+.. +-..
T Consensus 76 ~Lm~elG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v-T-L~H--~dlP~~L~~~yGGW~n~ 149 (477)
T PRK15014 76 KLFAEMGFKCFRT--SIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI-T-LSH--FEMPLHLVQQYGSWTNR 149 (477)
T ss_pred HHHHHcCCCEEEe--cccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-eeC--CCCCHHHHHhcCCCCCh
Confidence 45544 9999998 6999999997 34444 34578999999999998863 3 445 347888853 2234
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeecccccc--------Cccc-cc---CC----h-hH---------HHHHHHHHHh
Q 002447 668 DLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHG--------SFYQ-DK---LG----K-DI---------RAYMFKTAHQ 721 (921)
Q Consensus 668 ~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~--------~~~~-~~---lg----~-~~---------~~~af~~ar~ 721 (921)
+..+.+.+|.+.+++||++||..|=.+|||+.. .+.. .. .+ . -| ...|+++.|+
T Consensus 150 ~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 150 KVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999632 1110 10 11 1 11 2467888888
Q ss_pred cCCCceEEEec-CCCcCCCC--CC----------------------CCHHHHHHHHH-------------HHHHCCCcee
Q 002447 722 LDLSATLFVND-YHVEDGCD--PR----------------------SSPEKYIEHIL-------------NLQEQGAPVG 763 (921)
Q Consensus 722 ~dP~a~L~~Nd-y~~~~~~~--~~----------------------~~~~~~~~~i~-------------~l~~~g~piD 763 (921)
..|++++-+.- .....+.. +. .-+..+.+.+. +++.+| ++|
T Consensus 230 ~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~-~~D 308 (477)
T PRK15014 230 INPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG-TCD 308 (477)
T ss_pred hCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCC
Confidence 88987764321 11101100 00 00011111111 112123 468
Q ss_pred eEEeeccCC---------------------CCC-----------HHHHHHHHHHH-hhcCCCEEEeeeccCCCC------
Q 002447 764 GIGIQGHID---------------------SPV-----------GPIVCSALDNL-GILGLPIWFTELDVSSIN------ 804 (921)
Q Consensus 764 gIG~Q~H~~---------------------~p~-----------~~~i~~~l~~~-a~~glpi~iTE~dv~~~~------ 804 (921)
=||++.+.. .|. +..|+..|..+ .+.++||+|||-++...+
T Consensus 309 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g 388 (477)
T PRK15014 309 YLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDG 388 (477)
T ss_pred EEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCC
Confidence 888765521 010 12478888876 468899999999987532
Q ss_pred ---ccchHHHHHHHHHHH---H--cCCCeEEEEEEccCCCCCCC-----CCccccCCC----------CCcchHHHHHHH
Q 002447 805 ---EYVRGEDLEVMLREA---F--AHPAVEGIMLWGFWELFMSR-----DSAHLVNAE----------GDINEAGKKFLN 861 (921)
Q Consensus 805 ---e~~qa~~~~~~l~~~---~--s~p~v~gi~~Wg~~d~~~~~-----~~~gL~d~d----------~~pKpa~~~~~~ 861 (921)
+..+-+++++.|..+ . .--.|.|.+.|.+.|...|. .-+||+.-| ..||+++..+++
T Consensus 389 ~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (477)
T PRK15014 389 SINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKE 468 (477)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHH
Confidence 234566776655443 3 23469999999999986663 458887444 349999999999
Q ss_pred HHH
Q 002447 862 LKQ 864 (921)
Q Consensus 862 l~~ 864 (921)
+.+
T Consensus 469 ii~ 471 (477)
T PRK15014 469 VIA 471 (477)
T ss_pred HHH
Confidence 865
No 20
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.99 E-value=5.7e-08 Score=113.30 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=167.6
Q ss_pred HHHHh-ccceeeccccccccccccc--CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ--QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKN 667 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~--~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~ 667 (921)
+++++ .+|.-++ .+.|..|+|. .|.+|-. ..+++++-|+++||++.- | ++| -.+|.|+.. +...
T Consensus 80 ~Lm~~lG~~aYRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V-T-L~H--~dlP~~L~~~~GGW~n~ 153 (478)
T PRK09593 80 ALFAEMGFKTYRM--SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV-T-ITH--FDCPMHLIEEYGGWRNR 153 (478)
T ss_pred HHHHHcCCCEEEE--ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-ecc--cCCCHHHHhhcCCCCCh
Confidence 44544 8999988 6999999997 4445543 468999999999998763 3 345 247999853 2334
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeeccccccC---cc-cc---cCC----h-hH---------HHHHHHHHHhcCCCc
Q 002447 668 DLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS---FY-QD---KLG----K-DI---------RAYMFKTAHQLDLSA 726 (921)
Q Consensus 668 ~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~---~~-~~---~lg----~-~~---------~~~af~~ar~~dP~a 726 (921)
+..+.+.+|.+.+++||++||..|=-+|||+... ++ .. ..| . -| ...|+++.|+..|+.
T Consensus 154 ~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g 233 (478)
T PRK09593 154 KMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPEN 233 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6678999999999999999999999999997421 11 00 112 1 11 246778888888987
Q ss_pred eEEEe-cCCCcCCCCCCC------------------------CHHHHHHHHH-------------HHHHCCCceeeEEee
Q 002447 727 TLFVN-DYHVEDGCDPRS------------------------SPEKYIEHIL-------------NLQEQGAPVGGIGIQ 768 (921)
Q Consensus 727 ~L~~N-dy~~~~~~~~~~------------------------~~~~~~~~i~-------------~l~~~g~piDgIG~Q 768 (921)
++-+. .+....+..... -+..+.+.+. +++.+| ++|=||++
T Consensus 234 ~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g-~~DFlGiN 312 (478)
T PRK09593 234 KVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN-TVDFISFS 312 (478)
T ss_pred eEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCCEEEEe
Confidence 76432 111111110000 0001111111 111123 46888876
Q ss_pred ccCC----------------------CCC-----------HHHHHHHHHHH-hhcCCCEEEeeeccCCCC---------c
Q 002447 769 GHID----------------------SPV-----------GPIVCSALDNL-GILGLPIWFTELDVSSIN---------E 805 (921)
Q Consensus 769 ~H~~----------------------~p~-----------~~~i~~~l~~~-a~~glpi~iTE~dv~~~~---------e 805 (921)
.+.. .|. +..|+..|.++ .++++||+|||-++...+ +
T Consensus 313 yYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D 392 (478)
T PRK09593 313 YYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVED 392 (478)
T ss_pred cccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCC
Confidence 5421 010 13478888876 467899999999987432 2
Q ss_pred cchHHHHHHHHHHHH-----cCCCeEEEEEEccCCCCCCC-----CCccccCCCCC----------cchHHHHHHHHHHH
Q 002447 806 YVRGEDLEVMLREAF-----AHPAVEGIMLWGFWELFMSR-----DSAHLVNAEGD----------INEAGKKFLNLKQE 865 (921)
Q Consensus 806 ~~qa~~~~~~l~~~~-----s~p~v~gi~~Wg~~d~~~~~-----~~~gL~d~d~~----------pKpa~~~~~~l~~~ 865 (921)
..+-+++++.|..+. .--.|.|.+.|.+.|...|. ..+||+.-|+. ||+++..++++.+.
T Consensus 393 ~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ 472 (478)
T PRK09593 393 DYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIAS 472 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 335667766554432 23469999999999997774 34898766654 89999999998753
No 21
>PLN02998 beta-glucosidase
Probab=98.93 E-value=1e-07 Score=111.37 Aligned_cols=259 Identities=13% Similarity=0.162 Sum_probs=165.5
Q ss_pred HHHHh-ccceeeccccccccccccc-CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ-QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKND 668 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~-~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~~ 668 (921)
+++++ .+|.-++ .+-|..|+|. .|.+|-+ ..+++++-|+++||++.- | ++| -.+|.|+.. +-..+
T Consensus 89 ~lmk~lG~~~YRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V-T-L~H--~dlP~~L~~~yGGW~n~~ 162 (497)
T PLN02998 89 KLMADMGLEAYRF--SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV-T-LHH--FDLPQALEDEYGGWLSQE 162 (497)
T ss_pred HHHHHcCCCeEEe--eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE-E-ecC--CCCCHHHHHhhCCcCCch
Confidence 44444 8888887 6999999997 4555544 468999999999998863 3 345 247889864 12346
Q ss_pred HHHHHHHHHHHHHHHcCCeeeEEEeeccccccC-------cccccC-----------Ch----hH---------HHHHHH
Q 002447 669 LMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS-------FYQDKL-----------GK----DI---------RAYMFK 717 (921)
Q Consensus 669 l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~l-----------g~----~~---------~~~af~ 717 (921)
..+.+.+|++.+++||++||..|=.+|||+.-. .+.... |. -| ...|++
T Consensus 163 ~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~ 242 (497)
T PLN02998 163 IVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATI 242 (497)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999997421 111100 00 11 245677
Q ss_pred HHHhc---CCCceEE--EecCCCcCCCCCCCC--H-----HHHH-----H---------HHHHHHH--------------
Q 002447 718 TAHQL---DLSATLF--VNDYHVEDGCDPRSS--P-----EKYI-----E---------HILNLQE-------------- 757 (921)
Q Consensus 718 ~ar~~---dP~a~L~--~Ndy~~~~~~~~~~~--~-----~~~~-----~---------~i~~l~~-------------- 757 (921)
+.|+. .|+.++- +|..-.+ +...... . ..+. + .+++++.
T Consensus 243 ~~~~~~~~~~~g~IGi~~~~~~~~-P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i 321 (497)
T PLN02998 243 LYKQQYKYKQHGSVGISVYTYGAV-PLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQV 321 (497)
T ss_pred HHHHhhccCCCCcEEEEEeCCeee-cCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHh
Confidence 77775 6666653 3331111 1100000 0 0010 0 0111111
Q ss_pred CCCceeeEEeeccCC----------CC----------------------C-----HHHHHHHHHHHh-hcCC-CEEEeee
Q 002447 758 QGAPVGGIGIQGHID----------SP----------------------V-----GPIVCSALDNLG-ILGL-PIWFTEL 798 (921)
Q Consensus 758 ~g~piDgIG~Q~H~~----------~p----------------------~-----~~~i~~~l~~~a-~~gl-pi~iTE~ 798 (921)
+| ++|=||++.+.. .+ . +..|+..|.++. +.++ ||+|||-
T Consensus 322 ~~-~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITEN 400 (497)
T PLN02998 322 KG-AFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILEN 400 (497)
T ss_pred cC-CCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCC
Confidence 12 468899874421 00 0 124788888764 6787 6999999
Q ss_pred ccCCCC-----ccchHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCCC----CCccccCCCCC-------cchHHHH
Q 002447 799 DVSSIN-----EYVRGEDLEVMLREAF----AHPAVEGIMLWGFWELFMSR----DSAHLVNAEGD-------INEAGKK 858 (921)
Q Consensus 799 dv~~~~-----e~~qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d~~-------pKpa~~~ 858 (921)
++...+ +..+-+++++.|..+. .--.|.|.+.|.|.|...|. ..+||+.-|+. ||+++..
T Consensus 401 G~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~w 480 (497)
T PLN02998 401 GQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHW 480 (497)
T ss_pred CCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHH
Confidence 987532 3456677776555432 23469999999999997773 57898766654 8999999
Q ss_pred HHHHHH
Q 002447 859 FLNLKQ 864 (921)
Q Consensus 859 ~~~l~~ 864 (921)
|+++++
T Consensus 481 y~~ii~ 486 (497)
T PLN02998 481 YSSFLK 486 (497)
T ss_pred HHHHHh
Confidence 999864
No 22
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.91 E-value=2.6e-07 Score=107.66 Aligned_cols=259 Identities=12% Similarity=0.117 Sum_probs=166.5
Q ss_pred HHHHh-ccceeeccccccccccccc-CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC---CCHHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ-QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS---LNKNDL 669 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~-~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~---~~~~~l 669 (921)
+++++ .+|.-++ .+.|..|+|. .|.+|-+ ..+++++-|+++||++.- | ++| -.+|.|+.. +-..++
T Consensus 60 ~L~~~lG~~~yRf--SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~V-T-L~H--~dlP~~L~~~GGW~n~~~ 133 (467)
T TIGR01233 60 ELAEEYGVNGIRI--SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFV-T-LHH--FDTPEALHSNGDFLNREN 133 (467)
T ss_pred HHHHHcCCCEEEE--ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-e-ccC--CCCcHHHHHcCCCCCHHH
Confidence 34443 8999887 6999999997 4555543 468999999999998763 3 345 247999854 234567
Q ss_pred HHHHHHHHHHHHHHcCCeeeEEEeeccccccC-------cccccC-Ch--h-H---------HHHHHHHHHhcCCCceEE
Q 002447 670 MTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS-------FYQDKL-GK--D-I---------RAYMFKTAHQLDLSATLF 729 (921)
Q Consensus 670 ~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~l-g~--~-~---------~~~af~~ar~~dP~a~L~ 729 (921)
.+.+.+|.+.+++||++ |..|=-.|||+.-. .+.... .. + | ...|+++.|+..|+.++-
T Consensus 134 v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IG 212 (467)
T TIGR01233 134 IEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIG 212 (467)
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 88999999999999997 99999999997421 111100 10 1 1 247788888888988765
Q ss_pred Eec-CCCcCCCCCCCCH---------------------------HHHHHHHH-----------------HHHH--CCCce
Q 002447 730 VND-YHVEDGCDPRSSP---------------------------EKYIEHIL-----------------NLQE--QGAPV 762 (921)
Q Consensus 730 ~Nd-y~~~~~~~~~~~~---------------------------~~~~~~i~-----------------~l~~--~g~pi 762 (921)
+.- .....+.++. .+ ..+.+.+. +++. +| ++
T Consensus 213 i~~~~~~~~P~~~~-~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~-~~ 290 (467)
T TIGR01233 213 VVHALPTKYPYDPE-NPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKD-LN 290 (467)
T ss_pred EEecCceeEECCCC-CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCC-CC
Confidence 321 1111111100 00 00111111 1111 12 35
Q ss_pred eeEEeeccCC----------------------------------CC-C-----------HHHHHHHHHHHh-hcCC--CE
Q 002447 763 GGIGIQGHID----------------------------------SP-V-----------GPIVCSALDNLG-ILGL--PI 793 (921)
Q Consensus 763 DgIG~Q~H~~----------------------------------~p-~-----------~~~i~~~l~~~a-~~gl--pi 793 (921)
|=||++.+.. .+ . +..|+..|..+. ++++ ||
T Consensus 291 DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi 370 (467)
T TIGR01233 291 DFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKI 370 (467)
T ss_pred CEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCE
Confidence 7777765421 00 0 124788887764 6776 69
Q ss_pred EEeeeccCCCC--------ccchHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCCC----CCccccCCCC-----Cc
Q 002447 794 WFTELDVSSIN--------EYVRGEDLEVMLREAF----AHPAVEGIMLWGFWELFMSR----DSAHLVNAEG-----DI 852 (921)
Q Consensus 794 ~iTE~dv~~~~--------e~~qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d~-----~p 852 (921)
+|||-++...+ +..+-+++++.|..+. .--.|.|.+.|.|.|...|. .-+||+.-|+ +|
T Consensus 371 ~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~ 450 (467)
T TIGR01233 371 YITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYP 450 (467)
T ss_pred EEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCcccc
Confidence 99999987432 2346667776555432 23469999999999997773 5688876665 49
Q ss_pred chHHHHHHHHHHH
Q 002447 853 NEAGKKFLNLKQE 865 (921)
Q Consensus 853 Kpa~~~~~~l~~~ 865 (921)
|+++..++++.+.
T Consensus 451 K~S~~wy~~ii~~ 463 (467)
T TIGR01233 451 KKSAHWYKKLAET 463 (467)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999998654
No 23
>PLN02814 beta-glucosidase
Probab=98.90 E-value=2.4e-07 Score=108.49 Aligned_cols=260 Identities=11% Similarity=0.135 Sum_probs=166.2
Q ss_pred HHHHh-ccceeeccccccccccccc-CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ-QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKND 668 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~-~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~~ 668 (921)
+++++ .+|.-++ .+-|..|+|. +|.+|-+ ..+++++-|+++||++.- | ++| -.+|.|+.. +-..+
T Consensus 84 ~L~k~lG~~ayRf--SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V-T-L~H--~dlP~~L~~~yGGW~n~~ 157 (504)
T PLN02814 84 KLMAEMGLESFRF--SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV-T-LYH--YDLPQSLEDEYGGWINRK 157 (504)
T ss_pred HHHHHcCCCEEEE--eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-E-ecC--CCCCHHHHHhcCCcCChh
Confidence 34444 8888887 6999999997 5666654 468999999999998863 3 344 237889864 23346
Q ss_pred HHHHHHHHHHHHHHHcCCeeeEEEeeccccccCc--cc-c-cC-------------C---hh-H---------HHHHHHH
Q 002447 669 LMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSF--YQ-D-KL-------------G---KD-I---------RAYMFKT 718 (921)
Q Consensus 669 l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~--~~-~-~l-------------g---~~-~---------~~~af~~ 718 (921)
..+.+.+|.+.+++||++||..|=..|||..-.. +. . .. + .+ | ...|+++
T Consensus 158 ~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~ 237 (504)
T PLN02814 158 IIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNL 237 (504)
T ss_pred HHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999974210 00 0 00 0 11 1 2466777
Q ss_pred HHhc---CCCceEEEe-cCCCcCCCCCCCCHH---------HHH-----H---------HHHHHHH--------------
Q 002447 719 AHQL---DLSATLFVN-DYHVEDGCDPRSSPE---------KYI-----E---------HILNLQE-------------- 757 (921)
Q Consensus 719 ar~~---dP~a~L~~N-dy~~~~~~~~~~~~~---------~~~-----~---------~i~~l~~-------------- 757 (921)
.|+. .|+.++-+- .+....+.. ..+. .+. + .+++++.
T Consensus 238 ~~~~~~~~~~g~IGi~~~~~~~~P~~--~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i 315 (504)
T PLN02814 238 YKLKYKSKQRGSIGLSIFAFGLSPYT--NSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQV 315 (504)
T ss_pred HHHHhccCCCCeEEEEEeCceeecCC--CCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHh
Confidence 7764 787765432 121111110 0010 010 0 0111111
Q ss_pred CCCceeeEEeeccCC------C-C-------------------------------CHHHHHHHHHHHh-hcCC-CEEEee
Q 002447 758 QGAPVGGIGIQGHID------S-P-------------------------------VGPIVCSALDNLG-ILGL-PIWFTE 797 (921)
Q Consensus 758 ~g~piDgIG~Q~H~~------~-p-------------------------------~~~~i~~~l~~~a-~~gl-pi~iTE 797 (921)
+| ++|=||++.+.. . + .+..|+..|..+. +.+. ||+|||
T Consensus 316 kg-~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITE 394 (504)
T PLN02814 316 KG-SSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILE 394 (504)
T ss_pred cC-CCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEEC
Confidence 12 458888765521 0 0 0234788888774 5666 799999
Q ss_pred eccCCCC-----ccchHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCC----CCCccccCCCC-------CcchHHH
Q 002447 798 LDVSSIN-----EYVRGEDLEVMLREAF----AHPAVEGIMLWGFWELFMS----RDSAHLVNAEG-------DINEAGK 857 (921)
Q Consensus 798 ~dv~~~~-----e~~qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~----~~~~gL~d~d~-------~pKpa~~ 857 (921)
-++...+ +..+-+++++.|..+. .--.|.|.+.|.+.|...| ...+||+--|+ .||+++.
T Consensus 395 NG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~ 474 (504)
T PLN02814 395 NGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSAS 474 (504)
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHH
Confidence 9996432 3456777776655432 3346999999999999777 35688876554 4899999
Q ss_pred HHHHHHHHh
Q 002447 858 KFLNLKQEW 866 (921)
Q Consensus 858 ~~~~l~~~w 866 (921)
.|+++.+.-
T Consensus 475 wy~~~i~~~ 483 (504)
T PLN02814 475 WYTGFLNGT 483 (504)
T ss_pred HHHHHHhcC
Confidence 999987433
No 24
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.87 E-value=5.8e-07 Score=104.91 Aligned_cols=260 Identities=17% Similarity=0.228 Sum_probs=166.7
Q ss_pred HHHHh-ccceeeccccccccccccc--CCcccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQ--QGNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKN 667 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~--~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~ 667 (921)
+++++ .+|.-++ .+-|..|+|. .|.+|-. ..+++++-|+++||++.- | ++| -.+|.|+.. +...
T Consensus 74 ~Lm~~lG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~V-T-L~H--~dlP~~L~~~yGGW~n~ 147 (476)
T PRK09589 74 ALFAEMGFKCFRT--SIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVV-T-LSH--FEMPYHLVTEYGGWRNR 147 (476)
T ss_pred HHHHHcCCCEEEe--ccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-ecC--CCCCHHHHHhcCCcCCh
Confidence 44444 8998887 6999999997 3444443 468999999999998863 3 345 247888853 2334
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeeccccccC--------cc-cc---cCC----h-hH---------HHHHHHHHHh
Q 002447 668 DLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS--------FY-QD---KLG----K-DI---------RAYMFKTAHQ 721 (921)
Q Consensus 668 ~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~--------~~-~~---~lg----~-~~---------~~~af~~ar~ 721 (921)
++.+.+.+|.+.+++||++||..|=-.|||+.-. +. .. ..| . -| ...|+++.|+
T Consensus 148 ~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~ 227 (476)
T PRK09589 148 KLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHE 227 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999996421 11 00 112 1 01 2467788888
Q ss_pred cCCCceEEE--ecCCCcC-CCCC----------------------CCCHHHHHHHHH-------------HHHHCCCcee
Q 002447 722 LDLSATLFV--NDYHVED-GCDP----------------------RSSPEKYIEHIL-------------NLQEQGAPVG 763 (921)
Q Consensus 722 ~dP~a~L~~--Ndy~~~~-~~~~----------------------~~~~~~~~~~i~-------------~l~~~g~piD 763 (921)
..|++++-+ |---... ...+ ..-+..+.++++ +++.+| ++|
T Consensus 228 ~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g-~~D 306 (476)
T PRK09589 228 INPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEG-CVD 306 (476)
T ss_pred hCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCC
Confidence 889877642 2100010 0000 000111112121 112233 468
Q ss_pred eEEeeccCCC----------------------C-----------CHHHHHHHHHHH-hhcCCCEEEeeeccCCCC-----
Q 002447 764 GIGIQGHIDS----------------------P-----------VGPIVCSALDNL-GILGLPIWFTELDVSSIN----- 804 (921)
Q Consensus 764 gIG~Q~H~~~----------------------p-----------~~~~i~~~l~~~-a~~glpi~iTE~dv~~~~----- 804 (921)
=||++.+... | .+..|+..|.++ .++++||+|||-++...+
T Consensus 307 FlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~ 386 (476)
T PRK09589 307 YIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREAD 386 (476)
T ss_pred EEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcC
Confidence 8888755310 0 012478888876 468999999999987432
Q ss_pred ----ccchHHHHHHHHHHH---H--cCCCeEEEEEEccCCCCCCC-----CCccccCCCC----------CcchHHHHHH
Q 002447 805 ----EYVRGEDLEVMLREA---F--AHPAVEGIMLWGFWELFMSR-----DSAHLVNAEG----------DINEAGKKFL 860 (921)
Q Consensus 805 ----e~~qa~~~~~~l~~~---~--s~p~v~gi~~Wg~~d~~~~~-----~~~gL~d~d~----------~pKpa~~~~~ 860 (921)
+..+-+++++.|..+ . .--.|.|.+.|.+.|...|. .-+||+--|+ .||+++..++
T Consensus 387 g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~ 466 (476)
T PRK09589 387 GTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYR 466 (476)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHH
Confidence 234566776655443 2 23469999999999997663 4588876655 3899999999
Q ss_pred HHHH
Q 002447 861 NLKQ 864 (921)
Q Consensus 861 ~l~~ 864 (921)
++.+
T Consensus 467 ~~i~ 470 (476)
T PRK09589 467 DVIA 470 (476)
T ss_pred HHHH
Confidence 9865
No 25
>PLN02849 beta-glucosidase
Probab=98.86 E-value=3.5e-07 Score=107.10 Aligned_cols=260 Identities=12% Similarity=0.133 Sum_probs=165.7
Q ss_pred HHHHh-ccceeecccccccccccccC-Ccccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcC----CCHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQQ-GNFNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS----LNKND 668 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~~-G~~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~----~~~~~ 668 (921)
+++++ ++|.-++ .+.|..|+|.. |.+|-. ..+++++-|+++||++.- | ++| -.+|-|+.. +-..+
T Consensus 86 ~Lm~~lG~~aYRf--SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V-T-L~H--~dlP~~L~~~yGGW~nr~ 159 (503)
T PLN02849 86 KLMVETGLDAFRF--SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV-T-LFH--YDHPQYLEDDYGGWINRR 159 (503)
T ss_pred HHHHHcCCCeEEE--eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-e-ecC--CCCcHHHHHhcCCcCCch
Confidence 34443 8888887 69999999973 555543 468999999999998863 3 344 247888864 12346
Q ss_pred HHHHHHHHHHHHHHHcCCeeeEEEeeccccccC-------cccc-c-C--------C---hh-H---------HHHHHHH
Q 002447 669 LMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGS-------FYQD-K-L--------G---KD-I---------RAYMFKT 718 (921)
Q Consensus 669 l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~-~-l--------g---~~-~---------~~~af~~ 718 (921)
..+.+.+|.+.+++||++||..|=-.|||+.-. .+.. . . + .+ | ...|+++
T Consensus 160 ~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~ 239 (503)
T PLN02849 160 IIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRL 239 (503)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999997421 1110 0 0 1 01 1 2456677
Q ss_pred HHhc---CCCceEEE-ecCCCcCCCCCCCC-------------------------HHHHHHHHH-----------HHHHC
Q 002447 719 AHQL---DLSATLFV-NDYHVEDGCDPRSS-------------------------PEKYIEHIL-----------NLQEQ 758 (921)
Q Consensus 719 ar~~---dP~a~L~~-Ndy~~~~~~~~~~~-------------------------~~~~~~~i~-----------~l~~~ 758 (921)
.|+. .|++++-+ +......+...... +..+.+.++ +++ +
T Consensus 240 ~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i-~ 318 (503)
T PLN02849 240 YKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQV-K 318 (503)
T ss_pred HHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHh-c
Confidence 7765 37777643 22211111100000 000111110 111 2
Q ss_pred CCceeeEEeeccCC--------C-----------------C---------CHHHHHHHHHHH-hhcCC-CEEEeeeccCC
Q 002447 759 GAPVGGIGIQGHID--------S-----------------P---------VGPIVCSALDNL-GILGL-PIWFTELDVSS 802 (921)
Q Consensus 759 g~piDgIG~Q~H~~--------~-----------------p---------~~~~i~~~l~~~-a~~gl-pi~iTE~dv~~ 802 (921)
| ++|=||++.+.. . + .+..|+..|..+ .++++ ||+|||-++..
T Consensus 319 ~-~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~ 397 (503)
T PLN02849 319 G-SSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPM 397 (503)
T ss_pred C-CCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCc
Confidence 2 468888874421 0 0 012478888876 46788 79999999875
Q ss_pred CC-------ccchHHHHHHHHHHHH----cCCCeEEEEEEccCCCCCCC----CCccccCCCCC-------cchHHHHHH
Q 002447 803 IN-------EYVRGEDLEVMLREAF----AHPAVEGIMLWGFWELFMSR----DSAHLVNAEGD-------INEAGKKFL 860 (921)
Q Consensus 803 ~~-------e~~qa~~~~~~l~~~~----s~p~v~gi~~Wg~~d~~~~~----~~~gL~d~d~~-------pKpa~~~~~ 860 (921)
.+ +..+-+++++.|..+. .--.|.|.+.|.+.|...|. ..+||+.-|+. ||+++.+++
T Consensus 398 ~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~ 477 (503)
T PLN02849 398 KQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYS 477 (503)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHH
Confidence 32 3446677776655432 23469999999999997773 57898766654 899999999
Q ss_pred HHHHH
Q 002447 861 NLKQE 865 (921)
Q Consensus 861 ~l~~~ 865 (921)
++++.
T Consensus 478 ~ii~~ 482 (503)
T PLN02849 478 AFLKG 482 (503)
T ss_pred HHHHh
Confidence 98764
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.54 E-value=6.4e-06 Score=91.51 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=139.6
Q ss_pred CCCCeeeccCCCCCCChHHHHHH----HhccceeecccccccccccccCCcccch---hhHHHHHHHHhcCCeeEEeeEE
Q 002447 578 NSFPIGSCINRSQIDNEDFVKFF----TKYFNWAVFGNELKWYWTESQQGNFNYK---DADDMLDLCLNHNIQTRGHCIF 650 (921)
Q Consensus 578 ~~F~fG~a~~~~~~~~~~y~~~~----~~~Fn~~t~eN~~kW~~~ep~~G~~~~~---~~D~~v~~a~~~gi~vrgH~L~ 650 (921)
.-|.++..+|...+..+..++.+ +.+||.|.. -+.|...||++|+|||+ ..+++++.|+++||.|. +
T Consensus 8 ~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~--yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi----l 81 (319)
T PF01301_consen 8 PFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVST--YVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI----L 81 (319)
T ss_dssp EE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEE--E--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE----E
T ss_pred EEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEE--eccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE----e
Confidence 34678888888777754444443 459999985 58999999999999998 46899999999999753 4
Q ss_pred eccc--------ccchhhhcCC-------CHHHHHHHHHHHHHHHHHHcC-------CeeeEEEeeccccccCcccccCC
Q 002447 651 WEVQ--------ATVQPWIQSL-------NKNDLMTAVQNRLTGLLARYK-------GKFRHYDVNNEMLHGSFYQDKLG 708 (921)
Q Consensus 651 W~~~--------~~~P~W~~~~-------~~~~l~~~~~~~i~~v~~rY~-------g~v~~WDVvNE~~~~~~~~~~lg 708 (921)
|..+ ...|.|+... +.+..+++++.+.+.++..-+ |.|....|=||--. ....
T Consensus 82 rpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~-----~~~~ 156 (319)
T PF01301_consen 82 RPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS-----YGTD 156 (319)
T ss_dssp EEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC-----TSS-
T ss_pred cccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC-----Cccc
Confidence 4332 2489998653 234556677777777665433 57999999999641 1234
Q ss_pred hhHHHHHHHHHHhcCCC-ceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCC-CceeeEEeeccCCCCCHHHHHHHHHHH
Q 002447 709 KDIRAYMFKTAHQLDLS-ATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQG-APVGGIGIQGHIDSPVGPIVCSALDNL 786 (921)
Q Consensus 709 ~~~~~~af~~ar~~dP~-a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g-~piDgIG~Q~H~~~p~~~~i~~~l~~~ 786 (921)
.+|++..-+.+++.-++ +.++-.|..-..... . . ...| .-+..++++++.. ..+....+..+
T Consensus 157 ~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~-~---~---------~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ 220 (319)
T PF01301_consen 157 RAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLP-D---G---------GLPGADIYATDNFPPGDN---PDEYFGDQRSF 220 (319)
T ss_dssp HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHC-C---C----------TTTGSCEEEEEETTTSS---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhCccceeeccCCCcccccc-c---C---------CCCcceEEeccccCCCch---HHHHHhhhhhc
Confidence 57998888888888777 445545542111000 0 0 0012 1256666665521 11111222222
Q ss_pred hhcCCCEEEeeeccCCC---Ccc---chHHHHHHHHHHHHcCCCeEEEEE------EccCCCC--------CCCCCcccc
Q 002447 787 GILGLPIWFTELDVSSI---NEY---VRGEDLEVMLREAFAHPAVEGIML------WGFWELF--------MSRDSAHLV 846 (921)
Q Consensus 787 a~~glpi~iTE~dv~~~---~e~---~qa~~~~~~l~~~~s~p~v~gi~~------Wg~~d~~--------~~~~~~gL~ 846 (921)
..+.|..++|+-.-.- ... .-++.+...+...++.....++.| ||++.+. ..-...+.+
T Consensus 221 -~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI 299 (319)
T PF01301_consen 221 -QPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPI 299 (319)
T ss_dssp -HTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB
T ss_pred -CCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCcc
Confidence 3456999999953321 111 123334444444454444444433 4455431 122457789
Q ss_pred CCCCCcchHHHHHHHHHHH
Q 002447 847 NAEGDINEAGKKFLNLKQE 865 (921)
Q Consensus 847 d~d~~pKpa~~~~~~l~~~ 865 (921)
+++|+++|-|..++.|.+.
T Consensus 300 ~E~G~~~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 300 DEYGQLTPKYYELRRLHQK 318 (319)
T ss_dssp -TTS-B-HHHHHHHHHHHT
T ss_pred CcCCCcCHHHHHHHHHHhc
Confidence 9999999999999998764
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1e-05 Score=91.69 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=162.8
Q ss_pred HHHHh-ccceeecccccccccccccCCc--ccch---hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCC----CHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQQGN--FNYK---DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL----NKN 667 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~~G~--~~~~---~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~----~~~ 667 (921)
+++++ .||+.++ .+-|..|.|..+. .|=. ..|++++-|+++||++.- || .| -.+|-|+... -..
T Consensus 66 ~L~~emG~~~~R~--SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~v-TL-~H--fd~P~~L~~~ygGW~nR 139 (460)
T COG2723 66 ALAKEMGLNAFRT--SIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFV-TL-YH--FDLPLWLQKPYGGWENR 139 (460)
T ss_pred HHHHHcCCCEEEe--eeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cc--cCCcHHHhhccCCccCH
Confidence 45554 8898887 6999999996554 4432 368999999999998863 33 33 2367777542 234
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCc-------cc-ccCChh-----------HHHHHHHHHHhcCCC--c
Q 002447 668 DLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSF-------YQ-DKLGKD-----------IRAYMFKTAHQLDLS--A 726 (921)
Q Consensus 668 ~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~-------~~-~~lg~~-----------~~~~af~~ar~~dP~--a 726 (921)
++.+++.+|++.++.||+++|.+|=..|||+.-.. +. .....+ .-+.|.+..|+..|+ .
T Consensus 140 ~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kI 219 (460)
T COG2723 140 ETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKV 219 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCce
Confidence 56789999999999999999999999999974211 11 111111 124677888888886 3
Q ss_pred eEEEecCCCcCCCCCCCCHHH---------H-----H----------HHHHHHHHCCC---------------ceeeEEe
Q 002447 727 TLFVNDYHVEDGCDPRSSPEK---------Y-----I----------EHILNLQEQGA---------------PVGGIGI 767 (921)
Q Consensus 727 ~L~~Ndy~~~~~~~~~~~~~~---------~-----~----------~~i~~l~~~g~---------------piDgIG~ 767 (921)
-+.+|--.. .+-+ .+++. + + .+.+.|.+.|+ .+|=||+
T Consensus 220 G~~~~~~p~-YP~s--~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~ 296 (460)
T COG2723 220 GIILNLTPA-YPLS--DKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGL 296 (460)
T ss_pred EEEeccCcC-CCCC--CCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEE
Confidence 344542111 0100 00100 0 0 02233323221 2788998
Q ss_pred eccC-C-------C----------------CC-----------HHHHHHHHHHHh-hcCCCEEEeeeccCCCC-------
Q 002447 768 QGHI-D-------S----------------PV-----------GPIVCSALDNLG-ILGLPIWFTELDVSSIN------- 804 (921)
Q Consensus 768 Q~H~-~-------~----------------p~-----------~~~i~~~l~~~a-~~glpi~iTE~dv~~~~------- 804 (921)
..+. . . |. +..|+..|.++- +.++|+.|||=++...+
T Consensus 297 NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~~~i 376 (460)
T COG2723 297 NYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEVDFDGI 376 (460)
T ss_pred eeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCcccccccCCc
Confidence 7665 1 0 00 124888888875 78999999998865432
Q ss_pred -ccchHHHHHHHHHHH---H-cCCCeEEEEEEccCCCCCCC----CCccccC--C----CCCcchHHHHHHHHHH
Q 002447 805 -EYVRGEDLEVMLREA---F-AHPAVEGIMLWGFWELFMSR----DSAHLVN--A----EGDINEAGKKFLNLKQ 864 (921)
Q Consensus 805 -e~~qa~~~~~~l~~~---~-s~p~v~gi~~Wg~~d~~~~~----~~~gL~d--~----d~~pKpa~~~~~~l~~ 864 (921)
+..+-+++++.|..+ . .--.|.|.+.|++.|..+|. .-+||+- . ...||+.+.+++++.+
T Consensus 377 ~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 377 NDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 233455666655432 2 33479999999999998874 3456542 2 2468889998888764
No 28
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.50 E-value=7.7e-07 Score=98.45 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=125.6
Q ss_pred HhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhc------CCCHHHHHHHHH
Q 002447 601 TKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQ------SLNKNDLMTAVQ 674 (921)
Q Consensus 601 ~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~------~~~~~~l~~~~~ 674 (921)
..+||.++. ..+....+++++|.+.||.|.--...|.. -.|-. ....++..+.+.
T Consensus 47 ~~G~N~iR~---------------~h~p~~~~~~~~cD~~GilV~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 107 (298)
T PF02836_consen 47 EMGFNAIRT---------------HHYPPSPRFYDLCDELGILVWQEIPLEGH----GSWQDFGNCNYDADDPEFRENAE 107 (298)
T ss_dssp HTT-SEEEE---------------TTS--SHHHHHHHHHHT-EEEEE-S-BSC----TSSSSTSCTSCTTTSGGHHHHHH
T ss_pred hcCcceEEc---------------ccccCcHHHHHHHhhcCCEEEEecccccc----CccccCCccccCCCCHHHHHHHH
Confidence 359999995 12234578999999999966432222110 00211 012235567888
Q ss_pred HHHHHHHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHH
Q 002447 675 NRLTGLLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHI 752 (921)
Q Consensus 675 ~~i~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i 752 (921)
+.+++++.|++. .|..|.+-||+ ....+++...+.+|+.||.-.+.++......
T Consensus 108 ~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~--------------- 163 (298)
T PF02836_consen 108 QELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDP--------------- 163 (298)
T ss_dssp HHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGG---------------
T ss_pred HHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeeccccccc---------------
Confidence 899999999996 59999999998 1235788899999999999877666431110
Q ss_pred HHHHHCCCceeeEEeeccC----CCCCHHHHHHHHHH-HhhcCCCEEEeeeccCCCCc---------------cchHHHH
Q 002447 753 LNLQEQGAPVGGIGIQGHI----DSPVGPIVCSALDN-LGILGLPIWFTELDVSSINE---------------YVRGEDL 812 (921)
Q Consensus 753 ~~l~~~g~piDgIG~Q~H~----~~p~~~~i~~~l~~-~a~~glpi~iTE~dv~~~~e---------------~~qa~~~ 812 (921)
.+|.+++..+. ..+....+...++. ....++|+.+||++...... ..|..++
T Consensus 164 --------~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~ 235 (298)
T PF02836_consen 164 --------YVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFI 235 (298)
T ss_dssp --------STSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEE
T ss_pred --------ccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhh
Confidence 01222221111 11223456666665 35689999999998765431 1111111
Q ss_pred HHHHHHHH--cCCCeEEEEEEccCCCCC-CC----CCccccCCCCCcchHHHHHHHHH
Q 002447 813 EVMLREAF--AHPAVEGIMLWGFWELFM-SR----DSAHLVNAEGDINEAGKKFLNLK 863 (921)
Q Consensus 813 ~~~l~~~~--s~p~v~gi~~Wg~~d~~~-~~----~~~gL~d~d~~pKpa~~~~~~l~ 863 (921)
.++...+. .++.+.|-.+|.+.|-.. .. ..-||+|.|.+||+++..++++.
T Consensus 236 ~~~~~~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~ 293 (298)
T PF02836_consen 236 WDYQDQAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQW 293 (298)
T ss_dssp SHSBHHHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHH
T ss_pred hhhhhhhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHh
Confidence 22222232 346677777787666322 11 23499999999999999887764
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.88 E-value=0.00081 Score=85.93 Aligned_cols=239 Identities=13% Similarity=0.145 Sum_probs=141.5
Q ss_pred ccCCceeeEeee-cCCC--CeeeccCCCCCCChHHHHHHH-hccceeecccccccccccccCCcccchhhHHHHHHHHhc
Q 002447 565 SMLGTFVKVKQT-QNSF--PIGSCINRSQIDNEDFVKFFT-KYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNH 640 (921)
Q Consensus 565 p~~g~~v~v~~~-~~~F--~fG~a~~~~~~~~~~y~~~~~-~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~ 640 (921)
-|.|..|.++-. +|.+ ..|.++....+. +..++++ .+||.++. ..+....++++.|.+.
T Consensus 328 ~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~--~dl~lmK~~g~NavR~---------------sHyP~~~~fydlcDe~ 390 (1021)
T PRK10340 328 WINNRYVKLHGVNRHDNDHRKGRAVGMDRVE--KDIQLMKQHNINSVRT---------------AHYPNDPRFYELCDIY 390 (1021)
T ss_pred EECCEEEEEEEeecCCCCcccCccCCHHHHH--HHHHHHHHCCCCEEEe---------------cCCCCCHHHHHHHHHC
Confidence 445666666643 3433 234443322111 1123333 59999995 1233456899999999
Q ss_pred CCeeEEeeEEe-cccccch--hhhcCCCHHHHHHHHHHHHHHHHHHcCC--eeeEEEeeccccccCcccccCChhHHHHH
Q 002447 641 NIQTRGHCIFW-EVQATVQ--PWIQSLNKNDLMTAVQNRLTGLLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYM 715 (921)
Q Consensus 641 gi~vrgH~L~W-~~~~~~P--~W~~~~~~~~l~~~~~~~i~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~a 715 (921)
||-|.--.-+| |...... .|+. +.++..+.+.+++++++.|++. .|..|-+-||... |. .++.+
T Consensus 391 GllV~dE~~~e~~g~~~~~~~~~~~--~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~--------g~-~~~~~ 459 (1021)
T PRK10340 391 GLFVMAETDVESHGFANVGDISRIT--DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY--------GC-NIRAM 459 (1021)
T ss_pred CCEEEECCcccccCccccccccccc--CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc--------cH-HHHHH
Confidence 99654321111 1000000 1211 2334556778889999999996 5999999999732 32 34788
Q ss_pred HHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhh--cCCCE
Q 002447 716 FKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGI--LGLPI 793 (921)
Q Consensus 716 f~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~--~glpi 793 (921)
++++|+.||.-.+.+.. ... ....|.++. ++ +.... ++.++. .++|+
T Consensus 460 ~~~~k~~DptR~v~~~~-----~~~------------------~~~~Dv~~~-~Y---~~~~~----~~~~~~~~~~kP~ 508 (1021)
T PRK10340 460 YHAAKALDDTRLVHYEE-----DRD------------------AEVVDVIST-MY---TRVEL----MNEFGEYPHPKPR 508 (1021)
T ss_pred HHHHHHhCCCceEEeCC-----CcC------------------ccccceecc-cc---CCHHH----HHHHHhCCCCCcE
Confidence 99999999986665432 000 012566663 11 22222 333433 36999
Q ss_pred EEeeeccCCCCccchHHHHHHHHHHHHcCCCeEEEEEEccCCCCC----------C--------CCC----c--cccCCC
Q 002447 794 WFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFM----------S--------RDS----A--HLVNAE 849 (921)
Q Consensus 794 ~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~~~----------~--------~~~----~--gL~d~d 849 (921)
.++|+.=.-.+.. --++++.....+||.+.|-.+|.+.|-.. | .++ . ||++.|
T Consensus 509 i~~Ey~hamgn~~---g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~d 585 (1021)
T PRK10340 509 ILCEYAHAMGNGP---GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPD 585 (1021)
T ss_pred EEEchHhccCCCC---CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCC
Confidence 9999863211111 01344555667899999999999999421 1 011 2 899999
Q ss_pred CCcchHHHHHHHHHHH
Q 002447 850 GDINEAGKKFLNLKQE 865 (921)
Q Consensus 850 ~~pKpa~~~~~~l~~~ 865 (921)
.+|||++..++++.+-
T Consensus 586 r~p~p~~~e~k~~~~p 601 (1021)
T PRK10340 586 QTPGPGLKEYKQVIAP 601 (1021)
T ss_pred CCCChhHHHHHHhcce
Confidence 9999999999887543
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=97.86 E-value=0.0046 Score=75.38 Aligned_cols=251 Identities=12% Similarity=0.118 Sum_probs=156.1
Q ss_pred CCCeeeccCCCCCCChHHHHHH----HhccceeecccccccccccccCCcccchh---hHHHHHHHHhcCCeeEEe--e-
Q 002447 579 SFPIGSCINRSQIDNEDFVKFF----TKYFNWAVFGNELKWYWTESQQGNFNYKD---ADDMLDLCLNHNIQTRGH--C- 648 (921)
Q Consensus 579 ~F~fG~a~~~~~~~~~~y~~~~----~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~---~D~~v~~a~~~gi~vrgH--~- 648 (921)
-+.+..++|...+..+.+++.+ +..||.|.. =+.|..-||++|+|||+. ..++++.|++.||-|.-. +
T Consensus 44 ~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~t--YV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY 121 (840)
T PLN03059 44 RILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT--YVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY 121 (840)
T ss_pred EEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEE--EecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcc
Confidence 3467778887777666565555 348998864 589999999999999973 568899999999976422 1
Q ss_pred --EEecccccchhhhcCC-------CHHHHHHHHHHHHHHHHHHc---------CCeeeEEEeeccccccCcccc--cCC
Q 002447 649 --IFWEVQATVQPWIQSL-------NKNDLMTAVQNRLTGLLARY---------KGKFRHYDVNNEMLHGSFYQD--KLG 708 (921)
Q Consensus 649 --L~W~~~~~~P~W~~~~-------~~~~l~~~~~~~i~~v~~rY---------~g~v~~WDVvNE~~~~~~~~~--~lg 708 (921)
==|.. ...|.|+... +.+..++++++|++.++.+. +|.|....|=||= +++... .-+
T Consensus 122 IcAEw~~-GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY--Gs~~~~~~~~d 198 (840)
T PLN03059 122 ICAEWNF-GGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY--GPVEWEIGAPG 198 (840)
T ss_pred eeeeecC-CCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc--cceecccCcch
Confidence 13443 3689998642 23456778888888877765 3679999999994 332211 123
Q ss_pred hhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhh
Q 002447 709 KDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGI 788 (921)
Q Consensus 709 ~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~ 788 (921)
.+|++..-++|++..-++.|+..|-. .. +|++---+. +. ..+.+.. ..
T Consensus 199 ~~Yl~~l~~~~~~~Gi~VPl~t~dg~-~~------------------------~~~v~~t~N-g~-----~~~~f~~-~~ 246 (840)
T PLN03059 199 KAYTKWAADMAVKLGTGVPWVMCKQE-DA------------------------PDPVIDTCN-GF-----YCENFKP-NK 246 (840)
T ss_pred HHHHHHHHHHHHHcCCCcceEECCCC-CC------------------------CccceecCC-Cc-----hhhhccc-CC
Confidence 57999999999999888889888722 00 011100001 00 0011110 11
Q ss_pred cCCCEEEeee--ccCC----CCccchHHHHHHHHHHHHcCCC-eEEEEEE------ccCCCCCC----CCCccccCCCCC
Q 002447 789 LGLPIWFTEL--DVSS----INEYVRGEDLEVMLREAFAHPA-VEGIMLW------GFWELFMS----RDSAHLVNAEGD 851 (921)
Q Consensus 789 ~glpi~iTE~--dv~~----~~e~~qa~~~~~~l~~~~s~p~-v~gi~~W------g~~d~~~~----~~~~gL~d~d~~ 851 (921)
...|...||+ ++-. ......++.+...+...++..+ +..+.|| |++.+... ...-+.+++.|.
T Consensus 247 ~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 247 DYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGL 326 (840)
T ss_pred CCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccC
Confidence 2258888886 2211 1112345666666666666532 2334332 23322211 134678899999
Q ss_pred cc-hHHHHHHHHHHHh
Q 002447 852 IN-EAGKKFLNLKQEW 866 (921)
Q Consensus 852 pK-pa~~~~~~l~~~w 866 (921)
++ |-|.++++|....
T Consensus 327 ~t~pKy~~lr~l~~~~ 342 (840)
T PLN03059 327 PREPKWGHLRDLHKAI 342 (840)
T ss_pred cchhHHHHHHHHHHHH
Confidence 99 6999999987665
No 31
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=97.84 E-value=0.00028 Score=70.27 Aligned_cols=135 Identities=21% Similarity=0.342 Sum_probs=79.3
Q ss_pred ceEECCCCCCCC-----------------CCceecCccceEEecccCCCCC---cccCCCceEEEEeccccccccccccc
Q 002447 32 NLIVNNDFSMGL-----------------HSWHPNCCHAFIASAESHYPEG---TSANSVGNHAVVTNRKECWQGLEQDI 91 (921)
Q Consensus 32 nlv~n~~FE~G~-----------------~~W~~~g~~~~v~~~~~~~~~~---~~~~sG~~sl~vt~Rt~~w~G~~q~i 91 (921)
|||.|++||++- .+|+-.+. |....++...+ ..+.+|.+++.+ ++.+. +.|.+
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~---Ve~i~~~~~~g~~~~~~p~G~~aveL-g~~~~---I~Q~~ 73 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGS---VEYIDSGHFQGGMYFAVPEGKQAVEL-GNEGS---ISQTF 73 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCE---EEEEecCCccCceeeeCCCCceEEEc-CCCce---EEEEE
Confidence 789999999873 13444332 22222211111 136789999998 44433 89988
Q ss_pred cCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEEEecCccEEEEeEEEecCCCceEEEEEEcC-
Q 002447 92 TDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTSVSKDNWENLEGTFSLSAVPDRIVFYLEGP- 170 (921)
Q Consensus 92 ~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~- 170 (921)
+ ..+|++|+|+..+. ..... ...+.+.+ . +. .....-.....+.+.|++.+-.|+. .. +.+.|.+..+
T Consensus 74 ~--t~~G~~Y~LtF~~~-~~~~~-~~~l~V~v--~--~~-~~~~~~~~~~~~~~~w~~~s~~F~A-~~-t~~~l~f~~~~ 142 (159)
T PF04862_consen 74 T--TVPGSTYTLTFSLA-RNCAQ-SESLSVSV--G--GQ-FSFVVTIQTSYGSGGWDTYSFTFTA-SS-TRITLTFHNPG 142 (159)
T ss_pred E--ccCCCEEEEEEEec-CCCCC-CccEEEEE--e--cc-cceEEEeeccCCCCCcEEEEEEEEe-CC-CEEEEEEECCC
Confidence 5 89999999999999 22221 11232222 1 11 1111111223345679999999999 44 6667777554
Q ss_pred ---CCCcceEEeeEEEe
Q 002447 171 ---APGVDLLIRSVVIT 184 (921)
Q Consensus 171 ---~~~~d~yvDdv~l~ 184 (921)
+...==+||||+|+
T Consensus 143 ~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 143 MESDSACGPVIDNVSVK 159 (159)
T ss_pred ccCCCCceeEEEEEEeC
Confidence 23344579999884
No 32
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=97.81 E-value=0.00039 Score=69.26 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=64.5
Q ss_pred cCCCceEEEEEeecCCCceeeeeeccccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEEcCCCc
Q 002447 239 PLSGKVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQATDKDW 318 (921)
Q Consensus 239 ~~~G~~sl~vt~Rt~~w~G~~~~v~~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~~~~~W 318 (921)
+..|.+++.+ ++... +.|.|+ ..+|++|+++..+. .... ....++ +.+.. .......+ ......+.|
T Consensus 54 ~p~G~~aveL-g~~~~---I~Q~~~--t~~G~~Y~LtF~~~-~~~~-~~~~l~--V~v~~--~~~~~~~~-~~~~~~~~w 120 (159)
T PF04862_consen 54 VPEGKQAVEL-GNEGS---ISQTFT--TVPGSTYTLTFSLA-RNCA-QSESLS--VSVGG--QFSFVVTI-QTSYGSGGW 120 (159)
T ss_pred CCCCceEEEc-CCCce---EEEEEE--ccCCCEEEEEEEec-CCCC-CCccEE--EEEec--ccceEEEe-eccCCCCCc
Confidence 5899999999 44443 999995 88999999999998 2111 112233 33211 11111111 222345579
Q ss_pred EEEEeEEEecCCCceEEEEEEcC----CCCccEEEeeEEec
Q 002447 319 AQLHGKFLLNGSPARVVIYMEGP----PPGADILVNSLVVK 355 (921)
Q Consensus 319 t~l~g~ft~~~~~~~~~ly~e~~----~~~~~~yiDdv~l~ 355 (921)
+..+-.|+. .. +.+.|.+..+ ....==+||||+|+
T Consensus 121 ~~~s~~F~A-~~-t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 121 DTYSFTFTA-SS-TRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred EEEEEEEEe-CC-CEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999998 44 7788877654 23444589999874
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.61 E-value=0.00096 Score=85.11 Aligned_cols=216 Identities=14% Similarity=0.116 Sum_probs=129.4
Q ss_pred HhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccch-hhhcCCCHHHHHHHHHHHHHH
Q 002447 601 TKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQ-PWIQSLNKNDLMTAVQNRLTG 679 (921)
Q Consensus 601 ~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P-~W~~~~~~~~l~~~~~~~i~~ 679 (921)
..+||.++. ..+...++++++|.+.||-|.--.-++.. ...| .++. +.++..+.+.+++++
T Consensus 382 ~~g~NaVR~---------------sHyP~~p~fydlcDe~GilV~dE~~~e~h-g~~~~~~~~--~dp~~~~~~~~~~~~ 443 (1027)
T PRK09525 382 QHNFNAVRC---------------SHYPNHPLWYELCDRYGLYVVDEANIETH-GMVPMNRLS--DDPRWLPAMSERVTR 443 (1027)
T ss_pred HCCCCEEEe---------------cCCCCCHHHHHHHHHcCCEEEEecCcccc-CCccccCCC--CCHHHHHHHHHHHHH
Confidence 359999995 12334578999999999955422111100 0011 1111 223456778888999
Q ss_pred HHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHH
Q 002447 680 LLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQE 757 (921)
Q Consensus 680 v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~ 757 (921)
++.|++. .|..|-+-||.-. | ...+.+++++|+.||.-.+.+..-.... .+.+++..+..
T Consensus 444 mV~RdrNHPSIi~WSlgNE~~~--------g-~~~~~l~~~~k~~DptRpV~y~~~~~~~---------~~~Dv~~~my~ 505 (1027)
T PRK09525 444 MVQRDRNHPSIIIWSLGNESGH--------G-ANHDALYRWIKSNDPSRPVQYEGGGADT---------AATDIICPMYA 505 (1027)
T ss_pred HHHhCCCCCEEEEEeCccCCCc--------C-hhHHHHHHHHHhhCCCCcEEECCCCCCC---------CccccccCCCC
Confidence 9999997 5999999999732 2 2357788999999998777665310000 01111111111
Q ss_pred CCCceeeEEeeccCCCCCHHHHHHHHHHHhh---cCCCEEEeeeccCCCCccchHHHHHHHHHHHHcCCCeEEEEEEccC
Q 002447 758 QGAPVGGIGIQGHIDSPVGPIVCSALDNLGI---LGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFW 834 (921)
Q Consensus 758 ~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~---~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~ 834 (921)
.++.- +.....+ ...|+.+.. .++|+.++|+.=.-++ .---++++...+.++|.+.|=.+|.+.
T Consensus 506 ---~~~~~--~~~~~~~-----~~~~~~~~~~~~~~kP~i~cEY~Hamgn---~~g~l~~yw~~~~~~~~~~GgfIW~w~ 572 (1027)
T PRK09525 506 ---RVDED--QPFPAVP-----KWSIKKWISLPGETRPLILCEYAHAMGN---SLGGFAKYWQAFRQYPRLQGGFIWDWV 572 (1027)
T ss_pred ---Ccccc--ccccccc-----hHHHHHHHhcCCCCCCEEEEechhcccC---cCccHHHHHHHHhcCCCeeEEeeEecc
Confidence 01100 0000011 122444433 2699999999622111 111467777777899999999999998
Q ss_pred CCCCCC------------------C---C---ccccCCCCCcchHHHHHHHHHHH
Q 002447 835 ELFMSR------------------D---S---AHLVNAEGDINEAGKKFLNLKQE 865 (921)
Q Consensus 835 d~~~~~------------------~---~---~gL~d~d~~pKpa~~~~~~l~~~ 865 (921)
|....+ + | -||+..|.+|+|.+.-++++.+-
T Consensus 573 Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p~p~~~E~K~v~qp 627 (1027)
T PRK09525 573 DQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTPHPALYEAKHAQQF 627 (1027)
T ss_pred CcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCCCccHHHHHhhcCc
Confidence 853211 1 1 27999999999999999988654
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.37 E-value=0.031 Score=65.79 Aligned_cols=258 Identities=16% Similarity=0.178 Sum_probs=140.6
Q ss_pred HHHHHHh--cCCeeEEeeEEecccccchhhhcCC------------CHHHHHHHHHHHHHHHHHHcCC---eeeEEEeec
Q 002447 633 MLDLCLN--HNIQTRGHCIFWEVQATVQPWIQSL------------NKNDLMTAVQNRLTGLLARYKG---KFRHYDVNN 695 (921)
Q Consensus 633 ~v~~a~~--~gi~vrgH~L~W~~~~~~P~W~~~~------------~~~~l~~~~~~~i~~v~~rY~g---~v~~WDVvN 695 (921)
+|+.|++ .+|++.+- -|. .|.|++.- ..++.++.+.+|....++.|+. .|.+.-+-|
T Consensus 158 ~ik~a~~~~~~lki~aS--pWS----pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QN 231 (496)
T PF02055_consen 158 LIKEALAINPNLKIFAS--PWS----PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQN 231 (496)
T ss_dssp HHHHHHHHHTT-EEEEE--ES-------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSS
T ss_pred HHHHHHHhCCCcEEEEe--cCC----CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccC
Confidence 4555544 34666654 464 58999741 1235677888888888888885 488889999
Q ss_pred cccccC----cccc-cCCh----hHHHHHHH-HHHhcCC--CceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC---CC
Q 002447 696 EMLHGS----FYQD-KLGK----DIRAYMFK-TAHQLDL--SATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ---GA 760 (921)
Q Consensus 696 E~~~~~----~~~~-~lg~----~~~~~af~-~ar~~dP--~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~---g~ 760 (921)
||.... .|.. ...+ ++++..+. ..++..+ +.||++.|-+-.. ...|. ..+++. ..
T Consensus 232 EP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~-------~~~~~---~~il~d~~A~~ 301 (496)
T PF02055_consen 232 EPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN-------LPDYA---DTILNDPEAAK 301 (496)
T ss_dssp SCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG-------TTHHH---HHHHTSHHHHT
T ss_pred CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc-------cchhh---hhhhcChhhHh
Confidence 998642 2322 1122 45655443 5667777 8999988755321 11232 233321 12
Q ss_pred ceeeEEeeccCCCCCHHHHHHHHHHHh--hcCCCEEEeeeccCCCC--------ccchHHHHHHHHHHHHcCCCeEEEEE
Q 002447 761 PVGGIGIQGHIDSPVGPIVCSALDNLG--ILGLPIWFTELDVSSIN--------EYVRGEDLEVMLREAFAHPAVEGIML 830 (921)
Q Consensus 761 piDgIG~Q~H~~~p~~~~i~~~l~~~a--~~glpi~iTE~dv~~~~--------e~~qa~~~~~~l~~~~s~p~v~gi~~ 830 (921)
-|||||+|.+.+.+.. ..|.+.. -.++.|+.||--..... .-.+++.+...+-..+.| ++.|.+.
T Consensus 302 yv~GiA~HwY~g~~~~----~~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn-~~~gw~~ 376 (496)
T PF02055_consen 302 YVDGIAFHWYGGDPSP----QALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNN-WVSGWID 376 (496)
T ss_dssp TEEEEEEEETTCS-HC----HHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHT-TEEEEEE
T ss_pred heeEEEEECCCCCchh----hHHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHh-hceeeee
Confidence 4999999888764322 2344432 24799999998654321 113455555544456677 8999999
Q ss_pred EccCC----CCCCC----CCccccCCC---CCcchHHHHHHHHHHHhccC---cccccC-CC-c--cEEEeecceeEEEE
Q 002447 831 WGFWE----LFMSR----DSAHLVNAE---GDINEAGKKFLNLKQEWLSH---AQGHVD-EQ-G--EFAFRGFHGTYTIV 892 (921)
Q Consensus 831 Wg~~d----~~~~~----~~~gL~d~d---~~pKpa~~~~~~l~~~w~t~---~~~~t~-~~-G--~~~~r~f~G~y~v~ 892 (921)
|++.= +.+|- ..+.++|.+ +...|.|.++..+.+--+.. ...+.+ .+ + ...|+---|...|-
T Consensus 377 WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvV 456 (496)
T PF02055_consen 377 WNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVV 456 (496)
T ss_dssp EESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEE
T ss_pred eeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEE
Confidence 99842 12332 233455544 34588999888875433322 111111 12 2 34455555888776
Q ss_pred EecCCc-eEEEEEEEeCCCC
Q 002447 893 IPTLHK-KIVKTFVVDKGES 911 (921)
Q Consensus 893 v~~~~~-~~~~~~~l~~~~~ 911 (921)
+-..+. ....+++|..+..
T Consensus 457 v~N~~~~~~~~~v~v~~~~~ 476 (496)
T PF02055_consen 457 VLNRGDSDQNFSVTVKDGSK 476 (496)
T ss_dssp EEE-SSS-EEEEEEEECTTT
T ss_pred EEcCCCCccceEEEEecCCc
Confidence 655443 3444677755443
No 35
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0057 Score=67.84 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=142.7
Q ss_pred CCcccchhhHHHHHHHHhcCCeeEEeeEEecccccch-hhhcCC-CHHHHHHHHHHHHHHHHHHcCCe-ee--EEEeecc
Q 002447 622 QGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQ-PWIQSL-NKNDLMTAVQNRLTGLLARYKGK-FR--HYDVNNE 696 (921)
Q Consensus 622 ~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P-~W~~~~-~~~~l~~~~~~~i~~v~~rY~g~-v~--~WDVvNE 696 (921)
+=.|+|+..|++++-..+.|+.+-=--|.|+..+..- .|=... ++....++++.+|..++.||+-+ |. ...++||
T Consensus 34 ~~~~~~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~ 113 (428)
T COG3664 34 KLFYPFTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAAFLKHVIRRVGVEFVRKWPFYSPNE 113 (428)
T ss_pred cccCChHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHHHHHHHHHHhChhheeecceeecCC
Confidence 4458889999999999998876533346787543222 364333 33347788999999999999843 44 4589999
Q ss_pred ccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeecc------
Q 002447 697 MLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGH------ 770 (921)
Q Consensus 697 ~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H------ 770 (921)
++.. .--.+|.+.-+..||+.+|...|--- .+. +. +..+++.+-+||=+-....
T Consensus 114 pn~~-----ad~~eyfk~y~~~a~~~~p~i~vg~~-w~~----------e~----l~~~~k~~d~idfvt~~a~~~~av~ 173 (428)
T COG3664 114 PNLL-----ADKQEYFKLYDATARQRAPSIQVGGS-WNT----------ER----LHEFLKKADEIDFVTELANSVDAVD 173 (428)
T ss_pred CCcc-----cchHHHHHHHHhhhhccCcceeeccc-cCc----------HH----HhhhhhccCcccceeeccccccccc
Confidence 8643 12347888888899999998877521 111 11 1223334445554443222
Q ss_pred CCCCC------------HHHHHHHHHHHh--hcCCCEEEeeeccCCC------CccchHHHHHHHHHHHHcCCCeEEEEE
Q 002447 771 IDSPV------------GPIVCSALDNLG--ILGLPIWFTELDVSSI------NEYVRGEDLEVMLREAFAHPAVEGIML 830 (921)
Q Consensus 771 ~~~p~------------~~~i~~~l~~~a--~~glpi~iTE~dv~~~------~e~~qa~~~~~~l~~~~s~p~v~gi~~ 830 (921)
+..|. .+.++.+.|++. .+|+|.++||..-... ++..+|.++-+.|+.+ .+-|.++..
T Consensus 174 ~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~Lr~~--g~~v~a~~y 251 (428)
T COG3664 174 FSTPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLLREA--GSPVDAFGY 251 (428)
T ss_pred ccCCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceeehHHHHHHHHHhc--CChhhhhhh
Confidence 22222 123444444443 4578999999876643 2345666666666554 457999999
Q ss_pred EccCCCC--C------CCCCccccCCCCCcchHHHHHHHHHHH
Q 002447 831 WGFWELF--M------SRDSAHLVNAEGDINEAGKKFLNLKQE 865 (921)
Q Consensus 831 Wg~~d~~--~------~~~~~gL~d~d~~pKpa~~~~~~l~~~ 865 (921)
|+..|-. + ....++|++.-+-.||||.+..-+.+-
T Consensus 252 W~~sdl~e~~g~~~~~~~~gfel~~~~~~rrpa~~~~l~~n~L 294 (428)
T COG3664 252 WTNSDLHEEHGPPEAPFVGGFELFAPYGGRRPAWMAALFFNRL 294 (428)
T ss_pred hhcccccccCCCcccccccceeeecccccchhHHHHHHHHHHH
Confidence 9998853 1 224688999999999999998877544
No 36
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.05 E-value=0.0008 Score=60.05 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHcC--CeeeEEEeecc-ccccC-----cccccCC---hhHHHHHHHHHHhcCCCceEEEec
Q 002447 680 LLARYK--GKFRHYDVNNE-MLHGS-----FYQDKLG---KDIRAYMFKTAHQLDLSATLFVND 732 (921)
Q Consensus 680 v~~rY~--g~v~~WDVvNE-~~~~~-----~~~~~lg---~~~~~~af~~ar~~dP~a~L~~Nd 732 (921)
+++||+ .+|-+|||+|| |.... .+.+... .++++++|+++|++||+..|..+-
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 467777 47999999999 54111 1111111 157899999999999999998764
No 37
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.054 Score=62.63 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=67.5
Q ss_pred ccceeecccccccccccccC---Ccccchh---hHHHHHHHHhcCCeeEEeeEEecccccchhhhcC-----CCHHHHHH
Q 002447 603 YFNWAVFGNELKWYWTESQQ---GNFNYKD---ADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQS-----LNKNDLMT 671 (921)
Q Consensus 603 ~Fn~~t~eN~~kW~~~ep~~---G~~~~~~---~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~-----~~~~~l~~ 671 (921)
+++.-++ .+.|..|-|.- +..|-.. .-.+++-+.+|||++.- | ++| -.+|.++.. +++ ++.+
T Consensus 104 gv~afRF--SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~V-T-LfH--wDlPq~LeDeYgGwLn~-~ive 176 (524)
T KOG0626|consen 104 GVDAFRF--SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFV-T-LFH--WDLPQALEDEYGGWLNP-EIVE 176 (524)
T ss_pred CCCeEEE--EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEE-E-Eec--CCCCHHHHHHhccccCH-HHHH
Confidence 5666665 79999998862 2344433 45789999999998863 3 345 237888764 344 5667
Q ss_pred HHHHHHHHHHHHcCCeeeEEEeeccccc
Q 002447 672 AVQNRLTGLLARYKGKFRHYDVNNEMLH 699 (921)
Q Consensus 672 ~~~~~i~~v~~rY~g~v~~WDVvNE~~~ 699 (921)
.+++|.+-+.++|++||..|--.|||..
T Consensus 177 dF~~yA~~CF~~fGDrVK~WiT~NEP~v 204 (524)
T KOG0626|consen 177 DFRDYADLCFQEFGDRVKHWITFNEPNV 204 (524)
T ss_pred HHHHHHHHHHHHhcccceeeEEecccce
Confidence 7999999999999999999999999973
No 38
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.018 Score=69.14 Aligned_cols=115 Identities=15% Similarity=0.219 Sum_probs=82.5
Q ss_pred cCCCCeeeccCCCCCCCh----HHHHHHHhccceeecccccccccccccCCcccchhhHHH-HHHHHhcCCeeEEeeEEe
Q 002447 577 QNSFPIGSCINRSQIDNE----DFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDM-LDLCLNHNIQTRGHCIFW 651 (921)
Q Consensus 577 ~~~F~fG~a~~~~~~~~~----~y~~~~~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~-v~~a~~~gi~vrgH~L~W 651 (921)
+..+.+|.|++++....+ +.+.+-..+||.++. +.+-|..+||++|+|+|+..|.. ++.|.+.|+.+.--+
T Consensus 13 ~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~i-g~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t--- 88 (673)
T COG1874 13 RRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRI-GYFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRT--- 88 (673)
T ss_pred ceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEe-eeEEeeccCccccccCcccchHHHHHHHHhcCceEEEec---
Confidence 345678899998876643 344444579999997 36999999999999999999998 999999999775322
Q ss_pred ccc-ccchhhhcCC------------------------CHHHHHHHHHHHHHHHHHH-cCC--eeeEEEeecc
Q 002447 652 EVQ-ATVQPWIQSL------------------------NKNDLMTAVQNRLTGLLAR-YKG--KFRHYDVNNE 696 (921)
Q Consensus 652 ~~~-~~~P~W~~~~------------------------~~~~l~~~~~~~i~~v~~r-Y~g--~v~~WDVvNE 696 (921)
.+ ...|.|+..- ...-.++.++..++.++.| |+. -|..|-|=||
T Consensus 89 -~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dne 160 (673)
T COG1874 89 -GPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNE 160 (673)
T ss_pred -CCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCc
Confidence 11 2345565320 0112445566667778888 874 5999999997
No 39
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=95.86 E-value=0.22 Score=49.11 Aligned_cols=146 Identities=20% Similarity=0.302 Sum_probs=66.7
Q ss_pred cccceEECCCCCCCC------------CCceecCc----cceEEecccCCCCCcccCCCceEEEEeccc--ccccc--cc
Q 002447 29 TAANLIVNNDFSMGL------------HSWHPNCC----HAFIASAESHYPEGTSANSVGNHAVVTNRK--ECWQG--LE 88 (921)
Q Consensus 29 ~~~nlv~n~~FE~G~------------~~W~~~g~----~~~v~~~~~~~~~~~~~~sG~~sl~vt~Rt--~~w~G--~~ 88 (921)
.+.|||.|++|...+ .-|....+ .+.++...++ +. --.+++.++.-. ..|-- +.
T Consensus 4 ~AQnLIkN~~F~t~Lt~e~~~as~~T~~~Wfavnde~~G~Tt~a~~~tn-----D~-k~~na~~is~~~~~tsWykafLa 77 (212)
T PF15425_consen 4 SAQNLIKNGDFDTPLTNENTTASNTTFGKWFAVNDEWDGATTIAWINTN-----DQ-KTGNAWGISSWDKQTSWYKAFLA 77 (212)
T ss_dssp ------SSTT--S----B-SSGGGS-TTSEEEEE-S-TTS-EEEEEE-S------T-TS-EEEEETT-SS---TTTEEEE
T ss_pred chhhhhhcCccCcchhccccCcCcccccceEEEecccCCceEeeeeccC-----cc-cccceEEEeecccCcHHHHHHHH
Confidence 367999999997553 34664311 1222211111 11 224678884332 25533 67
Q ss_pred ccccCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEE------------------eEEEecCccEEE
Q 002447 89 QDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIG------------------KTSVSKDNWENL 150 (921)
Q Consensus 89 q~i~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~------------------~~~~~~~~Wt~l 150 (921)
|-++..+++| -|++|.|+|...... .|++.+++.++++...-..+. ...-..+.|+++
T Consensus 78 Qr~~~gae~~-mYtLsF~AkA~t~g~---qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sqpn~s~a~y~~~ikkAgkWtkv 153 (212)
T PF15425_consen 78 QRYTNGAEKG-MYTLSFDAKADTNGT---QVHVFIRLHNDNGKDNQRFFMRRDYDAQSQPNQSDAQYNFKIKKAGKWTKV 153 (212)
T ss_dssp EEE-S---SS-EEEEEEEEEESSTT----EEEEEEE-B-TTS-B---EEEETT--TTT-TTSBSS-EEEE--STT--EEE
T ss_pred HHHhcccccc-eEEEEEEeecccCCC---cEEEEEEEecCCCccceeEEEEeccccccCccchhhhhhhccccCCceEEE
Confidence 7788889988 899999999876553 455555544444322111111 122236899999
Q ss_pred EeEEEecCC------------------C------ceEEEEEEcCCCCcceEEeeEEEe
Q 002447 151 EGTFSLSAV------------------P------DRIVFYLEGPAPGVDLLIRSVVIT 184 (921)
Q Consensus 151 ~g~ft~~~~------------------~------~~~~ly~e~~~~~~d~yvDdv~l~ 184 (921)
...|..... + ....|-+++...+...+||+|+|+
T Consensus 154 ~~~fdfgkvvNai~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q~k~s~vlId~VsLk 211 (212)
T PF15425_consen 154 SVYFDFGKVVNAISSFKMNPAEEVTDTDDDAAILKDFYICIQSQNKPSSVLIDDVSLK 211 (212)
T ss_dssp EEEEEEEEEES-SSBTTT-TT--EEE--TT-HHHHSEEEEEE--STT-EEEEEEEEEE
T ss_pred EEEeehhHHhHHHhhhccCCCCccccCccchhhhcceEEEEEEcCCCceEEecccEec
Confidence 998865420 0 134566667777888999999986
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=95.85 E-value=0.33 Score=54.49 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=99.0
Q ss_pred ccccCCcccchhh---HHHHHHHHhcCCeeEEeeEEecccccchhhhcCC------------CHHHHHHHHHHHHHHHHH
Q 002447 618 TESQQGNFNYKDA---DDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL------------NKNDLMTAVQNRLTGLLA 682 (921)
Q Consensus 618 ~ep~~G~~~~~~~---D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~------------~~~~l~~~~~~~i~~v~~ 682 (921)
..+..|.|+|+.- -.+++.|+++|+... -...| -.|-|+..- =.++-.+.+.+|+.+|+.
T Consensus 91 f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f-~aFSN----SPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~ 165 (384)
T PF14587_consen 91 FLPADGSYDWDADAGQRWFLKAAKERGVNIF-EAFSN----SPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVK 165 (384)
T ss_dssp SB-TTS-B-TTSSHHHHHHHHHHHHTT---E-EEE-S----SS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHH
T ss_pred ccCCCCCcCCCCCHHHHHHHHHHHHcCCCeE-EEeec----CCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHH
Confidence 3467789999752 248888999998742 11222 134555420 023557889999999999
Q ss_pred HcCC---eeeEEEeeccccccCcccc--cCC--------hhHHHHHHHHHHhcCCCceEEEecCCCc---CCC-CCCCCH
Q 002447 683 RYKG---KFRHYDVNNEMLHGSFYQD--KLG--------KDIRAYMFKTAHQLDLSATLFVNDYHVE---DGC-DPRSSP 745 (921)
Q Consensus 683 rY~g---~v~~WDVvNE~~~~~~~~~--~lg--------~~~~~~af~~ar~~dP~a~L~~Ndy~~~---~~~-~~~~~~ 745 (921)
+|+. .|.+.+-+|||... |.. .-| .++++.-.+..++...+++|.+.|=.-. ... ....
T Consensus 166 ~~~~~GI~f~~IsP~NEP~~~--W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~-- 241 (384)
T PF14587_consen 166 HYKKWGINFDYISPFNEPQWN--WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDW-- 241 (384)
T ss_dssp HHHCTT--EEEEE--S-TTS---GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TT--
T ss_pred HHHhcCCccceeCCcCCCCCC--CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCch--
Confidence 9953 59999999999743 421 111 1356666667777888999998863211 110 0000
Q ss_pred HHHHHHHHHHHHCCC-------c--eeeEEeeccCCC-CC--HHHHHHHHHH-Hhhc--CCCEEEeeeccCCCCcc----
Q 002447 746 EKYIEHILNLQEQGA-------P--VGGIGIQGHIDS-PV--GPIVCSALDN-LGIL--GLPIWFTELDVSSINEY---- 806 (921)
Q Consensus 746 ~~~~~~i~~l~~~g~-------p--iDgIG~Q~H~~~-p~--~~~i~~~l~~-~a~~--glpi~iTE~dv~~~~e~---- 806 (921)
..-..|+.+....- + -..|.-|+++.. |. .-.+|+.|.. +.+. ++++|-||+-+-..+++
T Consensus 242 -~r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~~~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~ 320 (384)
T PF14587_consen 242 -GRGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDSPWDDLRDIRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEG 320 (384)
T ss_dssp -S---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHHHTTSS--EEEE----S----TTT-SS
T ss_pred -hhhhhHHhhcCCCchhhhhccccchhheeecccccCCCHHHHHHHHHHHHHHHHhhCcCCceeeeeeeeccCCcccccC
Confidence 11233444444321 1 245666666643 32 1234444443 3344 99999999988754321
Q ss_pred ---------chHHHHHHHHHHHHcCCCeEEEEEEccCCCCCC
Q 002447 807 ---------VRGEDLEVMLREAFAHPAVEGIMLWGFWELFMS 839 (921)
Q Consensus 807 ---------~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~~~~ 839 (921)
.-|-++.+++..=+...++.+-.||.-.....+
T Consensus 321 ~g~~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~~~y 362 (384)
T PF14587_consen 321 GGYDRDLGMDTALYVARVIHNDLTYANASSWQWWTAISPYDY 362 (384)
T ss_dssp S-HHHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEESS--
T ss_pred CCcccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhccccc
Confidence 114455566655566778999889876654334
No 41
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.012 Score=66.09 Aligned_cols=249 Identities=18% Similarity=0.166 Sum_probs=152.9
Q ss_pred cchhhHHHHHHHHhcCCeeEEeeEE-ecccc---cchhhhcCCCH------HHHHHHHHHHHHHHHHHcCC--eeeEEEe
Q 002447 626 NYKDADDMLDLCLNHNIQTRGHCIF-WEVQA---TVQPWIQSLNK------NDLMTAVQNRLTGLLARYKG--KFRHYDV 693 (921)
Q Consensus 626 ~~~~~D~~v~~a~~~gi~vrgH~L~-W~~~~---~~P~W~~~~~~------~~l~~~~~~~i~~v~~rY~g--~v~~WDV 693 (921)
++..++.+++-|..++|++.-.-++ |.... +.=.|+-.-++ +..+...++||..++.-||- -|-.|..
T Consensus 65 ~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l 144 (587)
T COG3934 65 NVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWAL 144 (587)
T ss_pred cHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHh
Confidence 4567899999999999987532222 22211 22346522222 23455678999999998884 4889999
Q ss_pred eccccccCcccccCCh---hHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeec-
Q 002447 694 NNEMLHGSFYQDKLGK---DIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQG- 769 (921)
Q Consensus 694 vNE~~~~~~~~~~lg~---~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~- 769 (921)
-||+.-.. ...+. ++...++.+++..||+-.+-.+|-..- ... -++ | -.++ -+|--+++.
T Consensus 145 ~Ne~lv~~---p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~p--y-------N~r~-~vDya~~hLY 208 (587)
T COG3934 145 RNEPLVEA---PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAP--Y-------NARF-YVDYAANHLY 208 (587)
T ss_pred cCCccccc---cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCC--c-------ccce-eeccccchhh
Confidence 99975321 11121 577899999999999999988873321 000 000 0 0001 123223322
Q ss_pred -cCCC-CC----HHHHHHHHHHHhhcC-CCEEEeeeccCCC--CccchHHHHHHHHHHHHcCCCeEEEEEEccCCC----
Q 002447 770 -HIDS-PV----GPIVCSALDNLGILG-LPIWFTELDVSSI--NEYVRGEDLEVMLREAFAHPAVEGIMLWGFWEL---- 836 (921)
Q Consensus 770 -H~~~-p~----~~~i~~~l~~~a~~g-lpi~iTE~dv~~~--~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~---- 836 (921)
|.+. |. .......|+-....| +|+-+-|++.++. .+..||.++ .+++++.. +-.|-.+|-|.|-
T Consensus 209 ~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfi--w~~lal~~-ggdGaLiwclsdf~~gs 285 (587)
T COG3934 209 RHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFI--WIRLALDT-GGDGALIWCLSDFHLGS 285 (587)
T ss_pred hhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhh--hhhhHHhh-cCCceEEEEecCCccCC
Confidence 2222 21 112345677777889 9999999999975 355555543 34446665 4466678888763
Q ss_pred ----CCCCC---CccccCCCCCcchHHHHHHHHHHHhccC----cccccCCCccEEEeecceeEEEEE
Q 002447 837 ----FMSRD---SAHLVNAEGDINEAGKKFLNLKQEWLSH----AQGHVDEQGEFAFRGFHGTYTIVI 893 (921)
Q Consensus 837 ----~~~~~---~~gL~d~d~~pKpa~~~~~~l~~~w~t~----~~~~t~~~G~~~~r~f~G~y~v~v 893 (921)
..|++ ++|++|+|+.+|-++..+..+..+|..- .+..+=.-|+..-+-|.-.|.--.
T Consensus 286 dd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kdI~~~Sfq~p~~e~~eikp~~~va~~~fv~ 353 (587)
T COG3934 286 DDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKDISMCSFQPPTYEAGEIKPRDYVAQHIFVA 353 (587)
T ss_pred CCCCCccccccceeeeecCCCchhhhHHHHHHhccccceeeeecccCcccccceecchHhhhhceecH
Confidence 24654 7999999999999999999998777531 222332234555565655555433
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.19 Score=54.80 Aligned_cols=185 Identities=9% Similarity=0.073 Sum_probs=109.3
Q ss_pred HHhcCCeeEEeeEEecccccchhhhcCC---C-------HHHHHHHHHHHHHHHHHHcCC---eeeEEEeeccccccC--
Q 002447 637 CLNHNIQTRGHCIFWEVQATVQPWIQSL---N-------KNDLMTAVQNRLTGLLARYKG---KFRHYDVNNEMLHGS-- 701 (921)
Q Consensus 637 a~~~gi~vrgH~L~W~~~~~~P~W~~~~---~-------~~~l~~~~~~~i~~v~~rY~g---~v~~WDVvNE~~~~~-- 701 (921)
+..+|+.|-.-+ |. .|.|+..- . +.+-...+.+|+.+.+..|+. .+++--|=|||.-..
T Consensus 111 ~in~g~ivfASP--Ws----pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 111 AINPGMIVFASP--WS----PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred hcCCCcEEEecC--CC----CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 556777766543 53 57888641 1 224467788888888887774 589999999997542
Q ss_pred cccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHH
Q 002447 702 FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCS 781 (921)
Q Consensus 702 ~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~ 781 (921)
.|---+..|.++-+-++++-....+++++=|-.-..+. ..+..++ +.--.+ -+|++|+|.+-+. ....-.
T Consensus 185 d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~----~~dp~ln--Dp~a~a--~~~ilg~H~Ygg~--v~~~p~ 254 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPN----MSDPILN--DPKALA--NMDILGTHLYGGQ--VSDQPY 254 (433)
T ss_pred CcccccHHHHHHHHHHhhhhhccccEEecchhcccccc----ccccccc--CHhHhc--ccceeEeeecccc--cccchh
Confidence 11111445677777777777777888888654321110 0001110 000012 3799999666432 111112
Q ss_pred HHHHHhhcCCCEEEeeeccCCCCccc---hHHHHHHHHHHHHcCCCeEEEEEEccCCCC
Q 002447 782 ALDNLGILGLPIWFTELDVSSINEYV---RGEDLEVMLREAFAHPAVEGIMLWGFWELF 837 (921)
Q Consensus 782 ~l~~~a~~glpi~iTE~dv~~~~e~~---qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~~ 837 (921)
.|.+....|+.||.||.-....+..- .+-.+..-+..+.-..++.|+.||.+.-..
T Consensus 255 ~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 255 PLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred hHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeecc
Confidence 23333345999999999777554322 233344445556666799999999987653
No 43
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=95.57 E-value=0.13 Score=52.22 Aligned_cols=109 Identities=11% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCCceEEEEEee---cCCCceeeeeecc-ccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEEcC
Q 002447 240 LSGKVFASATER---TQSWNGIQQEITG-RVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQATD 315 (921)
Q Consensus 240 ~~G~~sl~vt~R---t~~w~G~~~~v~~-~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~~~ 315 (921)
..|.++|+++-. ...|.++..++.. .. -..--|+.|+|.+++ ...+. |.++ ++...-.+........
T Consensus 40 ~~~~~~l~~~y~~~~~~~~~~v~~~l~~~Dw--S~~~gl~Fw~k~dgs---~~~l~--vqi~--d~~~~e~~~~~~~~~~ 110 (178)
T PF03425_consen 40 PDGGKALAISYDGGGSGGWAGVTKDLDPGDW--SGYGGLSFWIKGDGS---GNKLR--VQIK--DGGDYEYWEASFTDSS 110 (178)
T ss_dssp -SSSEEEEEEEE--SS-EEEEE-EE-S------TT--EEEEEEEE---------EE--EEEE--EE-EEEEEEEEE---S
T ss_pred CCCCcEEEEEEecCCCCceEEEecCCCcCCc--ccCCcEEEEEEcCCC---CcEEE--EEEe--cCCcceeeEeecCCCC
Confidence 578889998887 2234455444431 12 134469999998853 23343 3332 3321112334455555
Q ss_pred CCcEEEEe---EEEe-----cC-----------CCceEEEEEEcCCCCccEEEeeEEecccc
Q 002447 316 KDWAQLHG---KFLL-----NG-----------SPARVVIYMEGPPPGADILVNSLVVKHAE 358 (921)
Q Consensus 316 ~~Wt~l~g---~ft~-----~~-----------~~~~~~ly~e~~~~~~~~yiDdv~l~~~~ 358 (921)
. |++++- .|+- |. ....+.||+-+.....+||||||.|....
T Consensus 111 ~-W~~V~IPF~~f~~~~~~~p~g~~~~~~ldl~~v~~~~~~~~~~~~~~~~~iDdI~l~~~~ 171 (178)
T PF03425_consen 111 T-WKTVEIPFSDFTQRPDYQPGGWGADGTLDLTNVWEFAFYVNGGGGAGTFYIDDIRLYGAA 171 (178)
T ss_dssp S--EEEEEEGGG-EE--S---TT----SS--TTSEEEEEEEESSS---EEEEEEEEEEE-B-
T ss_pred c-CEEEEEEHHHcccccccCCCCCCcccccChHHcEEEEEEEcCCCceeEEEEEeEEEEeCc
Confidence 4 999885 4443 11 12355666655433379999999999664
No 44
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=95.09 E-value=1 Score=45.36 Aligned_cols=141 Identities=12% Similarity=0.153 Sum_probs=67.2
Q ss_pred EeCCCcCCCC--CCeeeeccee-----EEecccCCCceecCCCceEEEEEeecCCCce--e-eeeeccccccCceEEEEE
Q 002447 207 ILNPKFEDGL--NNWSGRGCKI-----VLHDSMADGKIVPLSGKVFASATERTQSWNG--I-QQEITGRVQRKLAYDVTA 276 (921)
Q Consensus 207 v~n~~FE~G~--~gW~~~g~~~-----~~~~~~~~~~~~~~~G~~sl~vt~Rt~~w~G--~-~~~v~~~l~~g~~Y~~Sa 276 (921)
+++-+||++. .+|..-.+.. ..... ......+|+|.+++.-..+...... + ..=|+-.| +|. .+++.
T Consensus 2 ~l~E~Fe~~~~p~gWTiiDadgdg~~W~~~~~-~~~~~~~~~g~~~~~S~s~~~~~~~~~~DnWLISP~l-~g~-~~i~f 78 (167)
T PF07675_consen 2 ILSEDFENGTIPAGWTIIDADGDGQTWKFYTN-SFTSLTPHSGDKAAASFSYNGGSGTLTADNWLISPQL-SGA-QTISF 78 (167)
T ss_dssp EECCTSTTTSS-TTSEEEETT-SS--SECCET-TTTT--BTTCSEEEEEESECTTCEE---EEEEE-S---TT--EEEEE
T ss_pred eeeccCCCCcCcCCcEEEEcCCCCcccccccc-cccccccccCCeEEEEEeeccccCccCCCceEEecCc-CCC-CEEEE
Confidence 5677899883 6886542211 00000 0011367999888876554332111 1 12233456 664 69999
Q ss_pred EEEEccCcccceEEEEEEEEEcCCC-cccceEEEEEEE--c------------CCCcEEEEeEEEecCCCceEEEEEEcC
Q 002447 277 VVRIFGNNVTTATVQATLWVQTPNQ-RDQYIVIANVQA--T------------DKDWAQLHGKFLLNGSPARVVIYMEGP 341 (921)
Q Consensus 277 wVk~~~~~~~~~~~~~~l~~~~~~~-~~~y~~i~~~~~--~------------~~~Wt~l~g~ft~~~~~~~~~ly~e~~ 341 (921)
|||.......+... .+.+...+. ...+..|...+. . .+.|++.+ +.||+....+-+..-..
T Consensus 79 ~v~~~~~~~~~E~y--~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~--v~Lp~gt~Y~afrh~~~ 154 (167)
T PF07675_consen 79 WVKSQDASYGPEHY--EVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERT--VDLPAGTKYFAFRHYNS 154 (167)
T ss_dssp EEEECTTTC---EE--EEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEE--EEE-TT--EEEEEEES-
T ss_pred EEEeccCCCCCceE--EEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEE--EeCCCCCcEEEEEeccC
Confidence 99987643223333 333334332 234555553322 1 35799887 66788777666644344
Q ss_pred CCCccEEEeeEEe
Q 002447 342 PPGADILVNSLVV 354 (921)
Q Consensus 342 ~~~~~~yiDdv~l 354 (921)
....-|+||||+|
T Consensus 155 td~~~l~iDDV~v 167 (167)
T PF07675_consen 155 TDAFYLMIDDVTV 167 (167)
T ss_dssp -SS-EEEEEEEEE
T ss_pred CCceEEEeccEEC
Confidence 4556789999986
No 45
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=94.66 E-value=0.38 Score=48.91 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCCceEEEEecc---cccccccccccc-CCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeE-EEEeEEEe
Q 002447 69 NSVGNHAVVTNR---KECWQGLEQDIT-DKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYL-FIGKTSVS 143 (921)
Q Consensus 69 ~sG~~sl~vt~R---t~~w~G~~q~i~-~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~-~i~~~~~~ 143 (921)
..|++.|.++-. ...|.+....+. .... .-.-|+.|+|.++... .| +|++... + .|. +......+
T Consensus 40 ~~~~~~l~~~y~~~~~~~~~~v~~~l~~~DwS--~~~gl~Fw~k~dgs~~---~l--~vqi~d~-~--~~e~~~~~~~~~ 109 (178)
T PF03425_consen 40 PDGGKALAISYDGGGSGGWAGVTKDLDPGDWS--GYGGLSFWIKGDGSGN---KL--RVQIKDG-G--DYEYWEASFTDS 109 (178)
T ss_dssp -SSSEEEEEEEE--SS-EEEEE-EE-S----T--T--EEEEEEEE---------E--EEEEEEE----EEEEEEEEE---
T ss_pred CCCCcEEEEEEecCCCCceEEEecCCCcCCcc--cCCcEEEEEEcCCCCc---EE--EEEEecC-C--cceeeEeecCCC
Confidence 467888888655 334455544442 1121 3558999999885443 33 2333322 2 222 34444555
Q ss_pred cCccEEEEeE---EEe-----cCC--------Cc---eEEEEEEcCCCCcceEEeeEEEecCCC
Q 002447 144 KDNWENLEGT---FSL-----SAV--------PD---RIVFYLEGPAPGVDLLIRSVVITCSSP 188 (921)
Q Consensus 144 ~~~Wt~l~g~---ft~-----~~~--------~~---~~~ly~e~~~~~~d~yvDdv~l~~~~~ 188 (921)
.. |++++-. |+- |.. .+ .+.+|+-+.....+|+||||.|.....
T Consensus 110 ~~-W~~V~IPF~~f~~~~~~~p~g~~~~~~ldl~~v~~~~~~~~~~~~~~~~~iDdI~l~~~~~ 172 (178)
T PF03425_consen 110 ST-WKTVEIPFSDFTQRPDYQPGGWGADGTLDLTNVWEFAFYVNGGGGAGTFYIDDIRLYGAAD 172 (178)
T ss_dssp SS--EEEEEEGGG-EE--S---TT----SS--TTSEEEEEEEESSS---EEEEEEEEEEE-B--
T ss_pred Cc-CEEEEEEHHHcccccccCCCCCCcccccChHHcEEEEEEEcCCCceeEEEEEeEEEEeCcc
Confidence 55 9999975 443 111 12 446777554434899999999996543
No 46
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=94.51 E-value=1.7 Score=43.67 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=64.4
Q ss_pred EECCCCCCCC--CCcee---cCccceEEecccCCCCCcccCCCceEEEEecccccccccccc---ccCCccCCceEEEEE
Q 002447 34 IVNNDFSMGL--HSWHP---NCCHAFIASAESHYPEGTSANSVGNHAVVTNRKECWQGLEQD---ITDKVSPGFTYLVSA 105 (921)
Q Consensus 34 v~n~~FE~G~--~~W~~---~g~~~~v~~~~~~~~~~~~~~sG~~sl~vt~Rt~~w~G~~q~---i~~~l~~g~tY~~S~ 105 (921)
+.+-+||++. .+|+- .|........... ...-.+|+|.+++.-..+.........+ |+-.| +|. .+++.
T Consensus 2 ~l~E~Fe~~~~p~gWTiiDadgdg~~W~~~~~~-~~~~~~~~g~~~~~S~s~~~~~~~~~~DnWLISP~l-~g~-~~i~f 78 (167)
T PF07675_consen 2 ILSEDFENGTIPAGWTIIDADGDGQTWKFYTNS-FTSLTPHSGDKAAASFSYNGGSGTLTADNWLISPQL-SGA-QTISF 78 (167)
T ss_dssp EECCTSTTTSS-TTSEEEETT-SS--SECCETT-TTT--BTTCSEEEEEESECTTCEE---EEEEE-S---TT--EEEEE
T ss_pred eeeccCCCCcCcCCcEEEEcCCCCccccccccc-ccccccccCCeEEEEEeeccccCccCCCceEEecCc-CCC-CEEEE
Confidence 6788999884 78973 2211111111110 0113689998887654432211111111 34455 774 69999
Q ss_pred EEEEcCCC--CcccEEEEEEEEeecC-CCceeEEEEeEEEe--------------cCccEEEEeEEEecCCCceEEEEEE
Q 002447 106 SVGVSGPH--QGSADVLATLKLEQRD-SETSYLFIGKTSVS--------------KDNWENLEGTFSLSAVPDRIVFYLE 168 (921)
Q Consensus 106 ~Vk~~~~~--~~~~~v~~~l~~~~~~-~~~~Y~~i~~~~~~--------------~~~Wt~l~g~ft~~~~~~~~~ly~e 168 (921)
|||..... ...+.|++ +..+ ....+..|.+...+ .+.|++.+ +.||+....+.+..-
T Consensus 79 ~v~~~~~~~~~E~y~V~~----Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~--v~Lp~gt~Y~afrh~ 152 (167)
T PF07675_consen 79 WVKSQDASYGPEHYEVLY----STTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERT--VDLPAGTKYFAFRHY 152 (167)
T ss_dssp EEEECTTTC---EEEEEE----ESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEE--EEE-TT--EEEEEEE
T ss_pred EEEeccCCCCCceEEEEE----ecCCCChhheEEeeeeeecccccccccccccccCccEEEEE--EeCCCCCcEEEEEec
Confidence 99985532 22334422 2223 23446655432221 35897766 466887777766543
Q ss_pred cCCCCcceEEeeEEE
Q 002447 169 GPAPGVDLLIRSVVI 183 (921)
Q Consensus 169 ~~~~~~d~yvDdv~l 183 (921)
......-|+||||+|
T Consensus 153 ~~td~~~l~iDDV~v 167 (167)
T PF07675_consen 153 NSTDAFYLMIDDVTV 167 (167)
T ss_dssp S--SS-EEEEEEEEE
T ss_pred cCCCceEEEeccEEC
Confidence 444445789999986
No 47
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=94.04 E-value=2.3 Score=41.86 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCCCCCCceecCc-cceEEecccCCC------CCcccCCCceEEEEeccccccccccccccC-CccCC-ceEEEEEEEE
Q 002447 38 DFSMGLHSWHPNCC-HAFIASAESHYP------EGTSANSVGNHAVVTNRKECWQGLEQDITD-KVSPG-FTYLVSASVG 108 (921)
Q Consensus 38 ~FE~G~~~W~~~g~-~~~v~~~~~~~~------~~~~~~sG~~sl~vt~Rt~~w~G~~q~i~~-~l~~g-~tY~~S~~Vk 108 (921)
+||+|+-+|+.... ............ ..+....+.++|++...... .|....|.+ .+.+- ...-|+.|-.
T Consensus 2 ~Fe~~~Cgw~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~G~yl~~~~s~~~-~~~~A~L~SP~~~~~~~~~Cl~F~y~ 80 (157)
T cd06263 2 DFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHCLSFWYH 80 (157)
T ss_pred CCCCCccCCEECCCCCCCEEECcCcCCCCCCCCCcccCCCccEEEEEECCCCC-CCCEEEEEcccCcCCCCCeEEEEEEE
Confidence 69999888876431 111111110000 00112334577777633322 232223333 33332 5677999988
Q ss_pred EcCCCCcccEEEEEEEEeecCCCceeEEEEeEEE-ecCccEEEEeEEEecCCCceEEEEEEcC---CCCcceEEeeEEEe
Q 002447 109 VSGPHQGSADVLATLKLEQRDSETSYLFIGKTSV-SKDNWENLEGTFSLSAVPDRIVFYLEGP---APGVDLLIRSVVIT 184 (921)
Q Consensus 109 ~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~~-~~~~Wt~l~g~ft~~~~~~~~~ly~e~~---~~~~d~yvDdv~l~ 184 (921)
..+...+ .+++.++. .++. ....|-+... ....|.+.+..+.. ......|.+|+. ....++-||||+|.
T Consensus 81 ~~g~~~g--~L~V~v~~--~~~~-~~~~lw~~~~~~~~~W~~~~v~l~~--~~~~fqi~fe~~~~~~~~g~IAIDdI~l~ 153 (157)
T cd06263 81 MYGSGVG--TLNVYVRE--EGGG-LGTLLWSASGGQGNQWQEAEVTLSA--SSKPFQVVFEGVRGSGSRGDIALDDISLS 153 (157)
T ss_pred ecCCCCC--eEEEEEEe--CCCC-cceEEEEEECCCCCeeEEEEEEECC--CCCceEEEEEEEECCCccccEEEeEEEEe
Confidence 8776543 34444432 2221 2233333332 36899777765544 335556667764 35689999999998
Q ss_pred c
Q 002447 185 C 185 (921)
Q Consensus 185 ~ 185 (921)
.
T Consensus 154 ~ 154 (157)
T cd06263 154 P 154 (157)
T ss_pred c
Confidence 5
No 48
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=93.19 E-value=2.7 Score=41.35 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCCCcEEEEEecccCCCCchhch-hhhhccC-cEEEEEEEEEEcCCCCCceeEEEEEEeCC--eEEecceEEE-cCCCeE
Q 002447 421 PLSGHYILVTNRTQTWMGPAQMI-TEKLKLF-LTYQVAAWVRIGSGATGPQNVNIALGVDN--QWVNGGQVEI-NDDRWH 495 (921)
Q Consensus 421 ~~~G~~l~~~~Rt~~w~g~~~~l-~~~l~~g-~~Y~vsawvr~~~g~~~~~~v~~~l~~d~--~~~~~g~~~~-~~~~W~ 495 (921)
..+|+||++...... .+..-.| ...+..- ....+++|.++.+.. ...+++.+..++ ....+-+... ..+.|.
T Consensus 40 ~~~G~yl~~~~s~~~-~~~~A~L~SP~~~~~~~~~Cl~F~y~~~g~~--~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~ 116 (157)
T cd06263 40 TGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHCLSFWYHMYGSG--VGTLNVYVREEGGGLGTLLWSASGGQGNQWQ 116 (157)
T ss_pred CCccEEEEEECCCCC-CCCEEEEEcccCcCCCCCeEEEEEEEecCCC--CCeEEEEEEeCCCCcceEEEEEECCCCCeeE
Confidence 457888887644332 2322222 2223332 456699998887642 356666665442 1222222222 258899
Q ss_pred EEEEEEEeecCCCeEEEEEeCC---CCCceEEEeeeeecc
Q 002447 496 EIGGSFRIEKQPSKVMVYIQGP---ASGIDVMVAGLQIFP 532 (921)
Q Consensus 496 ~l~G~~~~~~~~~~~~iy~e~~---~~~~~~~vDd~~i~~ 532 (921)
+..-.+... .....|.||+. ....+|.|||+++.+
T Consensus 117 ~~~v~l~~~--~~~fqi~fe~~~~~~~~g~IAIDdI~l~~ 154 (157)
T cd06263 117 EAEVTLSAS--SKPFQVVFEGVRGSGSRGDIALDDISLSP 154 (157)
T ss_pred EEEEEECCC--CCceEEEEEEEECCCccccEEEeEEEEec
Confidence 766555433 24455666643 345789999999964
No 49
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=92.08 E-value=0.39 Score=52.87 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=87.8
Q ss_pred chhhHHHHHHHHhcCCeeEEeeEEecccccch-hhhcC---CCHHHHHHHHHHHHHHHHHHcCCee-eEEEeeccccccC
Q 002447 627 YKDADDMLDLCLNHNIQTRGHCIFWEVQATVQ-PWIQS---LNKNDLMTAVQNRLTGLLARYKGKF-RHYDVNNEMLHGS 701 (921)
Q Consensus 627 ~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P-~W~~~---~~~~~l~~~~~~~i~~v~~rY~g~v-~~WDVvNE~~~~~ 701 (921)
|+.+|++|+.|.++||.+- -+++|+.+ ..| .|... +++ +..+.|++-|+.||+..- ..|.+-||-
T Consensus 87 F~~~d~~i~~a~~~Gi~~~-lv~~wg~~-~~~~~Wg~~~~~m~~----e~~~~Y~~yv~~Ry~~~~NviW~l~gd~---- 156 (289)
T PF13204_consen 87 FDHLDRRIEKANELGIEAA-LVPFWGCP-YVPGTWGFGPNIMPP----ENAERYGRYVVARYGAYPNVIWILGGDY---- 156 (289)
T ss_dssp HHHHHHHHHHHHHTT-EEE-EESS-HHH-HH-------TTSS-H----HHHHHHHHHHHHHHTT-SSEEEEEESSS----
T ss_pred HHHHHHHHHHHHHCCCeEE-EEEEECCc-cccccccccccCCCH----HHHHHHHHHHHHHHhcCCCCEEEecCcc----
Confidence 3468999999999999884 56789532 333 47652 333 346789999999999873 669999998
Q ss_pred cccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeec-cCCCCCHHHHH
Q 002447 702 FYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQG-HIDSPVGPIVC 780 (921)
Q Consensus 702 ~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~-H~~~p~~~~i~ 780 (921)
+....-.++...+.+.+|+.||...+-+-...-. +....| .++ --+|-+-+|+ |-... ....
T Consensus 157 -~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~------~~~~~~-------~~~-~Wldf~~~Qsgh~~~~--~~~~ 219 (289)
T PF13204_consen 157 -FDTEKTRADWDAMARGIKENDPYQLITIHPCGRT------SSPDWF-------HDE-PWLDFNMYQSGHNRYD--QDNW 219 (289)
T ss_dssp ---TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTE------BTHHHH-------TT--TT--SEEEB--S--TT----TH
T ss_pred -CCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCC------Ccchhh-------cCC-CcceEEEeecCCCccc--chHH
Confidence 2222335788999999999999883333322210 011111 111 1267788885 53211 1112
Q ss_pred HHH---HHHh-hcCCCEEEeeeccCCCC----c---cchHHHH-HHHHHHHHcCCCeEEEEE
Q 002447 781 SAL---DNLG-ILGLPIWFTELDVSSIN----E---YVRGEDL-EVMLREAFAHPAVEGIML 830 (921)
Q Consensus 781 ~~l---~~~a-~~glpi~iTE~dv~~~~----e---~~qa~~~-~~~l~~~~s~p~v~gi~~ 830 (921)
..+ ..++ ...+||..-|.-.-... . ...++.+ +.+...+|+-. -.|++.
T Consensus 220 ~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa-~aG~tY 280 (289)
T PF13204_consen 220 YYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA-YAGHTY 280 (289)
T ss_dssp HHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT---SEEEE
T ss_pred HHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC-CccccC
Confidence 222 2333 46899999998653321 1 2344444 45777788743 235543
No 50
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=91.61 E-value=12 Score=37.17 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=58.9
Q ss_pred ceEEEEEeecCCCceeeeeec-cccccC-ceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEE-EcCCCcE
Q 002447 243 KVFASATERTQSWNGIQQEIT-GRVQRK-LAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQ-ATDKDWA 319 (921)
Q Consensus 243 ~~sl~vt~Rt~~w~G~~~~v~-~~l~~g-~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~-~~~~~Wt 319 (921)
.+.|.+..+...- |-.-.|. ..+.+- ..+.++.|..+.+.. ...+ .|+++..++. ....+-... ...+.|.
T Consensus 47 G~y~~v~~~~~~~-g~~A~L~SP~~~~~~~~~cl~F~Y~m~G~~--~g~L--~V~~~~~~~~-~~~~lw~~~g~~~~~W~ 120 (161)
T smart00137 47 GHFMFFETSSGAP-GQTARLLSPPLYENRSTHCLTFWYYMYGSG--SGTL--NVYVRENNGS-QDTLLWSRSGTQGGQWL 120 (161)
T ss_pred eeEEEEECCCCCC-CCEEEEECCcccCCCCCeEEEEEEEecCCC--CCEE--EEEEEeCCCC-CceEeEEEcCCCCCceE
Confidence 3788877654322 3222222 223332 467899999998753 3334 4444433332 222333332 2456898
Q ss_pred EEEeEEEecCCCceEEEEEEcC---CCCccEEEeeEEeccc
Q 002447 320 QLHGKFLLNGSPARVVIYMEGP---PPGADILVNSLVVKHA 357 (921)
Q Consensus 320 ~l~g~ft~~~~~~~~~ly~e~~---~~~~~~yiDdv~l~~~ 357 (921)
+.+.. ++.....+.|.||+- ....++-||||+|...
T Consensus 121 ~~~v~--l~~~~~~fqi~fe~~~g~~~~g~IAiDDI~i~~g 159 (161)
T smart00137 121 QAEVA--LSKWQQPFQVVFEGTRGKGHSGYIALDDILLSNG 159 (161)
T ss_pred EEEEE--ecCCCCcEEEEEEEEEcCCccceEEEeEEEeecc
Confidence 87755 443333455666542 3558999999999754
No 51
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=91.48 E-value=7.1 Score=38.81 Aligned_cols=107 Identities=11% Similarity=0.153 Sum_probs=58.9
Q ss_pred ceEEEEeccccccccccccc-cCCccCC-ceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEE-EecCccE
Q 002447 72 GNHAVVTNRKECWQGLEQDI-TDKVSPG-FTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTS-VSKDNWE 148 (921)
Q Consensus 72 ~~sl~vt~Rt~~w~G~~q~i-~~~l~~g-~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~-~~~~~Wt 148 (921)
.++++|..+... .|-.-.| ...+.+- ..+.|+.|-...|...+. +++.++. .++.. ...|-+.. ...+.|.
T Consensus 47 G~y~~v~~~~~~-~g~~A~L~SP~~~~~~~~~cl~F~Y~m~G~~~g~--L~V~~~~--~~~~~-~~~lw~~~g~~~~~W~ 120 (161)
T smart00137 47 GHFMFFETSSGA-PGQTARLLSPPLYENRSTHCLTFWYYMYGSGSGT--LNVYVRE--NNGSQ-DTLLWSRSGTQGGQWL 120 (161)
T ss_pred eeEEEEECCCCC-CCCEEEEECCcccCCCCCeEEEEEEEecCCCCCE--EEEEEEe--CCCCC-ceEeEEEcCCCCCceE
Confidence 377877655432 2322222 2233332 467899998888776544 4334431 12211 12232222 2357897
Q ss_pred EEEeEEEecCCCceEEEEEEcC---CCCcceEEeeEEEecC
Q 002447 149 NLEGTFSLSAVPDRIVFYLEGP---APGVDLLIRSVVITCS 186 (921)
Q Consensus 149 ~l~g~ft~~~~~~~~~ly~e~~---~~~~d~yvDdv~l~~~ 186 (921)
+.+.. |+.......|.+|+- ....++-||||+|...
T Consensus 121 ~~~v~--l~~~~~~fqi~fe~~~g~~~~g~IAiDDI~i~~g 159 (161)
T smart00137 121 QAEVA--LSKWQQPFQVVFEGTRGKGHSGYIALDDILLSNG 159 (161)
T ss_pred EEEEE--ecCCCCcEEEEEEEEEcCCccceEEEeEEEeecc
Confidence 66654 443344556677764 3468999999999853
No 52
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=90.37 E-value=1.6 Score=50.47 Aligned_cols=119 Identities=12% Similarity=0.068 Sum_probs=71.3
Q ss_pred HHHHhccceeeccccccccccccc----CCcc---cchhhHHHHHHHHhcCCeeEEeeEEeccc-----ccchhhhcCC-
Q 002447 598 KFFTKYFNWAVFGNELKWYWTESQ----QGNF---NYKDADDMLDLCLNHNIQTRGHCIFWEVQ-----ATVQPWIQSL- 664 (921)
Q Consensus 598 ~~~~~~Fn~~t~eN~~kW~~~ep~----~G~~---~~~~~D~~v~~a~~~gi~vrgH~L~W~~~-----~~~P~W~~~~- 664 (921)
.+-..+||.++. .+-|..+++. |... .....|++|+||++.||.|. |-||.- +....|....
T Consensus 81 ~ik~~G~n~VRi--Pi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~---iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 81 QIKSAGFNAVRI--PIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVL---IDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred HHHHcCCcEEEc--ccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEE---EEecccCCCCCCcCcccccccc
Confidence 333569999995 3443333332 2211 11267999999999999874 333421 1223443321
Q ss_pred -CHHHHHHHHHHHHHHHHHHcCC--eeeEEEeeccccc---cCcccccCChhHHHHHHHHHH-hcCCCc
Q 002447 665 -NKNDLMTAVQNRLTGLLARYKG--KFRHYDVNNEMLH---GSFYQDKLGKDIRAYMFKTAH-QLDLSA 726 (921)
Q Consensus 665 -~~~~l~~~~~~~i~~v~~rY~g--~v~~WDVvNE~~~---~~~~~~~lg~~~~~~af~~ar-~~dP~a 726 (921)
..++..++..+..+.++.||++ .|...|++|||.. ...|... ...|+..+| +....+
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~-----~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGG-----DDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccc-----hHHHHHHHHhhhhhcC
Confidence 1334556778888899999997 4778899999973 3344321 266676664 444444
No 53
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=90.27 E-value=24 Score=42.76 Aligned_cols=229 Identities=17% Similarity=0.218 Sum_probs=98.2
Q ss_pred HHHHHHHhcC--CeeEEeeEEecccccchhhhcCC---C---HHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCcc
Q 002447 632 DMLDLCLNHN--IQTRGHCIFWEVQATVQPWIQSL---N---KNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFY 703 (921)
Q Consensus 632 ~~v~~a~~~g--i~vrgH~L~W~~~~~~P~W~~~~---~---~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~ 703 (921)
.+++-||+.+ |++-| |-|. .|.|+..- + +......+.++|....+.|+=.|++-.+|||-..+
T Consensus 116 ~L~~eAKkrNP~ikl~~--L~W~----~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~~--- 186 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYG--LPWG----FPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGFD--- 186 (669)
T ss_dssp HHHHHHHHH-TT-EEEE--EES-----B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS------
T ss_pred hhHHHHHhhCCCCeEEE--eccC----CCccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCCC---
Confidence 4777787765 55555 7886 68999762 1 12222345677877778888889999999996432
Q ss_pred cccCChhHHHHHHHHHHh-cCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHH
Q 002447 704 QDKLGKDIRAYMFKTAHQ-LDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSA 782 (921)
Q Consensus 704 ~~~lg~~~~~~af~~ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~ 782 (921)
.+|++.--+...+ ..-+.||+..|-..+. -...++. =.+|. + .||.||. |....... ..+
T Consensus 187 -----~~~ik~lr~~l~~~gy~~vkiva~D~~~~~------~~~~m~~-D~~l~--~-avdvig~--HY~~~~~~--~~a 247 (669)
T PF02057_consen 187 -----VNYIKWLRKALNSNGYNKVKIVAADNNWES------ISDDMLS-DPELR--N-AVDVIGY--HYPGTYSS--KNA 247 (669)
T ss_dssp -----HHHHHHHHHHHHHTT-TT-EEEEEEE-STT------HHHHHHH--HHHH--H-H--EEEE--ES-TT-----HHH
T ss_pred -----hhHHHHHHHHHhhccccceEEEEeCCCccc------hhhhhhc-CHHHH--h-cccEecc--ccCCCCcH--HHH
Confidence 2454332222333 3456899988833210 0112211 01222 1 2799998 54221111 111
Q ss_pred HHHHhhcCCCEEEeeeccCCCCccchHHHHHHHHHHHHcCCCeEEEEEEccCCCC----CCCCCccccCCC------CCc
Q 002447 783 LDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELF----MSRDSAHLVNAE------GDI 852 (921)
Q Consensus 783 l~~~a~~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d~~----~~~~~~gL~d~d------~~p 852 (921)
...|+|||-+|=--. -+...-+-.+.+.|..-+-.......+.|.+.... .| ..-||+.++ +..
T Consensus 248 ----~~~~K~lW~SE~~s~-~~~~~g~g~~ar~ln~~yv~g~mT~~I~w~lVasyYp~lpy-~~~gL~~A~ePWSG~Y~v 321 (669)
T PF02057_consen 248 ----KLTGKPLWSSEDYST-FNYNVGAGCWARILNRNYVNGRMTAYINWPLVASYYPGLPY-SRKGLMTANEPWSGHYEV 321 (669)
T ss_dssp ----HHHT-EEEEEEEE-S--TTHHHHHHHHHHHHHHHHHH--SEEEEE-SEE-S-TTSTT-TT-SSCE---TTT---B-
T ss_pred ----HHhCCCeEEcCCccc-ccCcCchHHHHHHHHhhhhccceEEEEeehhhhhhcCCCCC-CCccceEecCCcccceEe
Confidence 135999999994332 22222334444444444444467788888876642 33 233554433 123
Q ss_pred chHHHHHHHH----HHHhcc-CcccccCCCccE-EEeecceeEEEEEe
Q 002447 853 NEAGKKFLNL----KQEWLS-HAQGHVDEQGEF-AFRGFHGTYTIVIP 894 (921)
Q Consensus 853 Kpa~~~~~~l----~~~w~t-~~~~~t~~~G~~-~~r~f~G~y~v~v~ 894 (921)
-++..++... .--|+- +..+.....|.| .+..-.|+|.+.++
T Consensus 322 ~~~iWv~AHtTQFt~pGW~YL~~~G~l~~gGSYVtLtd~~gn~tiiiE 369 (669)
T PF02057_consen 322 DSPIWVTAHTTQFTQPGWRYLDSVGHLRGGGSYVTLTDGTGNYTIIIE 369 (669)
T ss_dssp -HHHHHHHHHHTT--TT-EEES--EE-TTS-EEEEEE-SSS-EEEEEE
T ss_pred cceeeeeeehhccCCCCeEEccCccccCCCcceEEeecCCCCceEEEE
Confidence 4444555443 233653 234555555533 34444678877664
No 54
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=90.25 E-value=2.3 Score=42.19 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=57.3
Q ss_pred ceEEEEEeecC--CCc--eeeeeeccccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceE-----------
Q 002447 243 KVFASATERTQ--SWN--GIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIV----------- 307 (921)
Q Consensus 243 ~~sl~vt~Rt~--~w~--G~~~~v~~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~----------- 307 (921)
.+++.+++-.. .|- -..|-+++.+++| .|++|.|.|.... ..++++-+++..+++...-..
T Consensus 57 ~na~~is~~~~~tsWykafLaQr~~~gae~~-mYtLsF~AkA~t~---g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sq 132 (212)
T PF15425_consen 57 GNAWGISSWDKQTSWYKAFLAQRYTNGAEKG-MYTLSFDAKADTN---GTQVHVFIRLHNDNGKDNQRFFMRRDYDAQSQ 132 (212)
T ss_dssp -EEEEETT-SS---TTTEEEEEEE-S---SS-EEEEEEEEEESST---T-EEEEEEE-B-TTS-B---EEEETT--TTT-
T ss_pred cceEEEeecccCcHHHHHHHHHHHhcccccc-eEEEEEEeecccC---CCcEEEEEEEecCCCccceeEEEEeccccccC
Confidence 34777754322 243 3678888788886 8999999999875 235665565555444221110
Q ss_pred -------EEEEEEcCCCcEEEEeEEEecC----------C--------------CceEEEEEEcCCCCccEEEeeEEec
Q 002447 308 -------IANVQATDKDWAQLHGKFLLNG----------S--------------PARVVIYMEGPPPGADILVNSLVVK 355 (921)
Q Consensus 308 -------i~~~~~~~~~Wt~l~g~ft~~~----------~--------------~~~~~ly~e~~~~~~~~yiDdv~l~ 355 (921)
.....-..+.|++++..|.+.+ + -....|.+.+.+.+...+||+|+|.
T Consensus 133 pn~s~a~y~~~ikkAgkWtkv~~~fdfgkvvNai~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q~k~s~vlId~VsLk 211 (212)
T PF15425_consen 133 PNQSDAQYNFKIKKAGKWTKVSVYFDFGKVVNAISSFKMNPAEEVTDTDDDAAILKDFYICIQSQNKPSSVLIDDVSLK 211 (212)
T ss_dssp TTSBSS-EEEE--STT--EEEEEEEEEEEEES-SSBTTT-TT--EEE--TT-HHHHSEEEEEE--STT-EEEEEEEEEE
T ss_pred ccchhhhhhhccccCCceEEEEEEeehhHHhHHHhhhccCCCCccccCccchhhhcceEEEEEEcCCCceEEecccEec
Confidence 0112225689999999887631 0 0234566677666778899999885
No 55
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=89.55 E-value=0.92 Score=39.32 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=34.7
Q ss_pred CcccccCCCccEEEe-ecceeEEEEEecCCce-EEE-EEEEeCCCCcEEEEEEe
Q 002447 869 HAQGHVDEQGEFAFR-GFHGTYTIVIPTLHKK-IVK-TFVVDKGESPLVVTIDL 919 (921)
Q Consensus 869 ~~~~~t~~~G~~~~r-~f~G~y~v~v~~~~~~-~~~-~~~l~~~~~~~~~~~~~ 919 (921)
.....||++|.|.|+ ...|.|.|.+.+++-. ... .+.|..+.. ..|+|.|
T Consensus 29 ~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~-~~~~i~L 81 (82)
T PF13620_consen 29 VYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQT-TTVDITL 81 (82)
T ss_dssp CCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSE-EE--EEE
T ss_pred EEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCE-EEEEEEE
Confidence 456789999999999 7789999999998853 443 588877644 5567665
No 56
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=89.08 E-value=9.5 Score=37.07 Aligned_cols=108 Identities=9% Similarity=0.128 Sum_probs=47.5
Q ss_pred ceEEEEEeecCCCceeeeeeccccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEE-EEEcCCCcEEE
Q 002447 243 KVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIAN-VQATDKDWAQL 321 (921)
Q Consensus 243 ~~sl~vt~Rt~~w~G~~~~v~~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~-~~~~~~~Wt~l 321 (921)
.++|.+......-.....-++..+.+...+.+++|..+.+.. ...++ +.+...... ....+.. .....+.|.+.
T Consensus 45 G~yl~~~~~~~~~~~~a~L~Sp~~~~~~~~cl~F~y~~~g~~--~~~L~--V~v~~~~~~-~~~~l~~~~~~~~~~W~~~ 119 (160)
T PF00629_consen 45 GHYLYVDSSSGSPGDSARLISPVFPASGNSCLSFWYYMYGSS--VGTLR--VYVREESTG-NSTPLWSITGSQGNSWQRA 119 (160)
T ss_dssp SEEEEEE-TT--TT-EEEEEEEEE--SS--EEEEEEEEE-SS--SEEEE--EEEEETT-----S-SEEE-----SSEEEE
T ss_pred eeEEEEeecccccCceEeeccccccccccceeEEEEeecccc--ceeeE--EEEEecCCc-cceeeeeecCCCcCCccce
Confidence 556666654432111222222335555688899999998753 23344 444343111 1222222 22356799988
Q ss_pred EeEEEecCCCceEEEEEEc---CCCCccEEEeeEEeccc
Q 002447 322 HGKFLLNGSPARVVIYMEG---PPPGADILVNSLVVKHA 357 (921)
Q Consensus 322 ~g~ft~~~~~~~~~ly~e~---~~~~~~~yiDdv~l~~~ 357 (921)
+..+... ...+.|.||+ ......+-||||+|...
T Consensus 120 ~v~l~~~--~~~~~i~f~~~~~~~~~~~iaiDdi~~~~~ 156 (160)
T PF00629_consen 120 QVNLPPI--SSPFQIIFEAIRGSSYRGDIAIDDISLSPG 156 (160)
T ss_dssp EEEE-----TS-EEEEEEEEE--SS--EEEEEEEEEESS
T ss_pred EEEcccc--cccceEEEEEEEcCCCceEEEEEEEEEeCC
Confidence 8655543 3344555543 23458999999999854
No 57
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=86.11 E-value=14 Score=35.80 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=48.0
Q ss_pred ceEEEEeccccccccccccc-cCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEe-EEEecCccEE
Q 002447 72 GNHAVVTNRKECWQGLEQDI-TDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGK-TSVSKDNWEN 149 (921)
Q Consensus 72 ~~sl~vt~Rt~~w~G~~q~i-~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~-~~~~~~~Wt~ 149 (921)
.++|.+..... -.+....| +..+.+...+-|+.|....+...+ .+++.+... ..+.. ..+.+ .......|++
T Consensus 45 G~yl~~~~~~~-~~~~~a~L~Sp~~~~~~~~cl~F~y~~~g~~~~--~L~V~v~~~-~~~~~--~~l~~~~~~~~~~W~~ 118 (160)
T PF00629_consen 45 GHYLYVDSSSG-SPGDSARLISPVFPASGNSCLSFWYYMYGSSVG--TLRVYVREE-STGNS--TPLWSITGSQGNSWQR 118 (160)
T ss_dssp SEEEEEE-TT---TT-EEEEEEEEE--SS--EEEEEEEEE-SSSE--EEEEEEEET-T------S-SEEE-----SSEEE
T ss_pred eeEEEEeeccc-ccCceEeeccccccccccceeEEEEeeccccce--eeEEEEEec-CCccc--eeeeeecCCCcCCccc
Confidence 46777654433 22221222 334445557889999998776643 344444322 11111 12222 2234689987
Q ss_pred EEeEEEecCCCceEEEEEEcC---CCCcceEEeeEEEecC
Q 002447 150 LEGTFSLSAVPDRIVFYLEGP---APGVDLLIRSVVITCS 186 (921)
Q Consensus 150 l~g~ft~~~~~~~~~ly~e~~---~~~~d~yvDdv~l~~~ 186 (921)
.+..+... .....|.+|+- .....+-||||+|...
T Consensus 119 ~~v~l~~~--~~~~~i~f~~~~~~~~~~~iaiDdi~~~~~ 156 (160)
T PF00629_consen 119 AQVNLPPI--SSPFQIIFEAIRGSSYRGDIAIDDISLSPG 156 (160)
T ss_dssp EEEEE-----TS-EEEEEEEEE--SS--EEEEEEEEEESS
T ss_pred eEEEcccc--cccceEEEEEEEcCCCceEEEEEEEEEeCC
Confidence 76655543 44445555553 3458999999999854
No 58
>PLN02161 beta-amylase
Probab=85.99 E-value=4.5 Score=46.88 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEecc------cc---cchhhhc
Q 002447 596 FVKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEV------QA---TVQPWIQ 662 (921)
Q Consensus 596 y~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~------~~---~~P~W~~ 662 (921)
.+.+-......|.. ++-|.-+|+ .|++|||+...++++.+++.||+++- +|-.|. .. ..|.|+.
T Consensus 123 L~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNvGd~~~IpLP~WV~ 196 (531)
T PLN02161 123 LKALKLAGVHGIAV--EVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV-ALCFHSNMHLFGGKGGISLPLWIR 196 (531)
T ss_pred HHHHHHcCCCEEEE--EeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCccCccCCHHHH
Confidence 33444457787776 699999998 79999999999999999999999985 456663 00 3799985
No 59
>PLN02803 beta-amylase
Probab=85.92 E-value=3.9 Score=47.65 Aligned_cols=64 Identities=9% Similarity=0.298 Sum_probs=49.7
Q ss_pred HHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc---------ccchhhhcC
Q 002447 597 VKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ---------ATVQPWIQS 663 (921)
Q Consensus 597 ~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~---------~~~P~W~~~ 663 (921)
+.+-......|.. ++-|+-+|+ .|++|||+...++++.+++.||+++. +|-.|.= -..|.|+..
T Consensus 114 ~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~e 187 (548)
T PLN02803 114 MALRSAGVEGVMV--DAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV-VMSFHQCGGNVGDSCSIPLPPWVLE 187 (548)
T ss_pred HHHHHcCCCEEEE--EeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3333457777776 699999998 49999999999999999999999985 4566620 037899753
No 60
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=85.61 E-value=11 Score=37.86 Aligned_cols=139 Identities=11% Similarity=0.230 Sum_probs=73.7
Q ss_pred CCCcCCCCCCeeeecceeE-Eec-ccCCCceecCCCceEEEEEe---ecCCCceeeeeec--cccccCceEEEEEEEEEc
Q 002447 209 NPKFEDGLNNWSGRGCKIV-LHD-SMADGKIVPLSGKVFASATE---RTQSWNGIQQEIT--GRVQRKLAYDVTAVVRIF 281 (921)
Q Consensus 209 n~~FE~G~~gW~~~g~~~~-~~~-~~~~~~~~~~~G~~sl~vt~---Rt~~w~G~~~~v~--~~l~~g~~Y~~SawVk~~ 281 (921)
..+|++++.||...|.--. ... ..+ .....|+.+|++.- -..+|+-..+ +. ..|.....-+|.+++=-.
T Consensus 10 ~~~f~~~~~g~~~~G~~q~~~~~~~i~---~~~~~g~gaLklnv~~~~~~~W~E~ki-~~~~~dls~~~~l~fDv~iP~~ 85 (170)
T PF09212_consen 10 DFSFDDSIEGWQNNGTWQASFSSPSIS---HSGDGGSGALKLNVDFDGNNDWDELKI-FKNFEDLSEYNRLEFDVYIPKN 85 (170)
T ss_dssp ---SGGGGGGEEEEEEES-EEEEEEEE---EESSGGGSEEEEEEEE-TTSTTEEEEE-CCEECCGCC--EEEEEEEEEHH
T ss_pred EecCCccccchhhCCccccccccCcee---EeccCCCccEEEEeecCCCCCcchhhh-hhhhhhcCCccEEEEEEEeCCC
Confidence 6779999999987664311 111 010 12345777887652 3346986655 43 357777777787777443
Q ss_pred cCcccceEEEEEEEEEcCCCcccc----e--EEE---EEEEcCCCcEEEEeEEEecCCC--ceEEEEEEcCC--CCccEE
Q 002447 282 GNNVTTATVQATLWVQTPNQRDQY----I--VIA---NVQATDKDWAQLHGKFLLNGSP--ARVVIYMEGPP--PGADIL 348 (921)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~~~~y----~--~i~---~~~~~~~~Wt~l~g~ft~~~~~--~~~~ly~e~~~--~~~~~y 348 (921)
.. ....++....+ .. +-..+ . .+. .+++...+..++..++.+.... .++.|-+-|.. =...+|
T Consensus 86 ~~--~~G~l~~~a~l-~~-gW~k~g~~~~~~~v~dle~v~i~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG~~~~Y~GpIY 161 (170)
T PF09212_consen 86 EK--YSGSLKPYAAL-NP-GWTKIGMDTTEINVKDLETVTIDGKGYKKIHVSIEFDSSKKATQLVLQIVGSNLDYNGPIY 161 (170)
T ss_dssp CC--SSSEE-EEEEE-CT-TTEEECCCSCEEECCCSEEEEETTEEEEEEEEEEE--SSCCE-EEEEEEEEES--EEEEEE
T ss_pred CC--CCccEEEEEEc-CC-ChHHhccccccccccccceEEECCeEEEEEEEEEEccccCCCCcEEEEEccccccccCCEE
Confidence 21 23345544444 22 11111 1 111 2345666788888888886533 57777776643 135999
Q ss_pred EeeEEec
Q 002447 349 VNSLVVK 355 (921)
Q Consensus 349 iDdv~l~ 355 (921)
||||.|.
T Consensus 162 IDNV~L~ 168 (170)
T PF09212_consen 162 IDNVKLI 168 (170)
T ss_dssp EEEEEEE
T ss_pred EEeEEEe
Confidence 9999985
No 61
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=85.34 E-value=1.1 Score=49.78 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCEEEeeeccCCCCc-----cchHHHHHHHHHHHH----cCCC-eEEEEEEccCCCCC------CCCC
Q 002447 779 VCSALDNLGILGLPIWFTELDVSSINE-----YVRGEDLEVMLREAF----AHPA-VEGIMLWGFWELFM------SRDS 842 (921)
Q Consensus 779 i~~~l~~~a~~glpi~iTE~dv~~~~e-----~~qa~~~~~~l~~~~----s~p~-v~gi~~Wg~~d~~~------~~~~ 842 (921)
+..++++++..++||+|||.+|++..+ .....+.+.+++.+. .+|+ -..+.+..+-|. . .+.+
T Consensus 216 ~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE-~~K~~~~~E~~ 294 (310)
T PF00332_consen 216 VYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE-NWKPGPEVERH 294 (310)
T ss_dssp HHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB---TTSSSSGGGGG
T ss_pred HHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC-cCCCCCcccce
Confidence 444444444457899999999998754 112233344444433 1343 233455555554 2 3458
Q ss_pred ccccCCCCCcc
Q 002447 843 AHLVNAEGDIN 853 (921)
Q Consensus 843 ~gL~d~d~~pK 853 (921)
+|||+.|++||
T Consensus 295 wGlf~~d~~~k 305 (310)
T PF00332_consen 295 WGLFYPDGTPK 305 (310)
T ss_dssp --SB-TTSSBS
T ss_pred eeeECCCCCee
Confidence 99999999887
No 62
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=85.06 E-value=3.1 Score=49.59 Aligned_cols=114 Identities=14% Similarity=0.262 Sum_probs=78.7
Q ss_pred CeeeccCCCCCCChHHHHHHH----hccceeecccccccccccccCCcccchh-h--HHHHHHHHhcCCee--EEeeE--
Q 002447 581 PIGSCINRSQIDNEDFVKFFT----KYFNWAVFGNELKWYWTESQQGNFNYKD-A--DDMLDLCLNHNIQT--RGHCI-- 649 (921)
Q Consensus 581 ~fG~a~~~~~~~~~~y~~~~~----~~Fn~~t~eN~~kW~~~ep~~G~~~~~~-~--D~~v~~a~~~gi~v--rgH~L-- 649 (921)
.|...+|......+...++++ -.+|.|.. -..|.-.||.+|+|+|+. . -+.+..|+++|+-| |..+-
T Consensus 36 ~isGsIHY~R~~pe~W~~~i~k~k~~Gln~Iqt--YVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIc 113 (649)
T KOG0496|consen 36 LISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQT--YVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYIC 113 (649)
T ss_pred EEEeccccccCChhhhHHHHHHHHhcCCceeee--eeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEE
Confidence 577778876666555555543 48998874 589999999999999984 3 35777788999866 33232
Q ss_pred -EecccccchhhhcCC-------CHHHHHHHHHHHHHHHHHHcC-------CeeeEEEeeccc
Q 002447 650 -FWEVQATVQPWIQSL-------NKNDLMTAVQNRLTGLLARYK-------GKFRHYDVNNEM 697 (921)
Q Consensus 650 -~W~~~~~~P~W~~~~-------~~~~l~~~~~~~i~~v~~rY~-------g~v~~WDVvNE~ 697 (921)
-|.. ...|-|+... +.+..+.+|+++.+.++.+.+ |.|..-.|=||=
T Consensus 114 aEw~~-GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEY 175 (649)
T KOG0496|consen 114 AEWNF-GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEY 175 (649)
T ss_pred ecccC-CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechh
Confidence 3543 3578676542 345667777777777666433 678888999984
No 63
>PLN00197 beta-amylase; Provisional
Probab=84.80 E-value=4.8 Score=47.10 Aligned_cols=64 Identities=11% Similarity=0.356 Sum_probs=49.9
Q ss_pred HHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc------c---cchhhhcC
Q 002447 597 VKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ------A---TVQPWIQS 663 (921)
Q Consensus 597 ~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~------~---~~P~W~~~ 663 (921)
+.+-.....-|.. ++-|+-+|+ .|++|||+...++++.+++.||+++- +|-+|.= . ..|.|+..
T Consensus 134 ~~LK~~GVdGVmv--DvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~-VmSFHqCGGNVGD~~~IpLP~WV~~ 207 (573)
T PLN00197 134 QALKSAGVEGIMM--DVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA-VMSFHQCGGNVGDSCTIPLPKWVVE 207 (573)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3333457777776 699999998 79999999999999999999999985 4566620 0 37999853
No 64
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=82.46 E-value=12 Score=41.52 Aligned_cols=141 Identities=10% Similarity=-0.023 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHH-HcCC----eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEec-CCCcCCCC
Q 002447 667 NDLMTAVQNRLTGLLA-RYKG----KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVND-YHVEDGCD 740 (921)
Q Consensus 667 ~~l~~~~~~~i~~v~~-rY~g----~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Nd-y~~~~~~~ 740 (921)
++.++.|.++++.++. -|.| .++.|.-+++.-.+......---++++.-.+.||+..|+++|+.|. +.+... .
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~-~ 221 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRD-D 221 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhc-c
Confidence 3567777788877754 3554 5667766665421100000000146777778889999999998763 222110 0
Q ss_pred CCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCC----C---HHHHHHHHHHHhhcCCCEEEeeeccCCCCccchHHHHH
Q 002447 741 PRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSP----V---GPIVCSALDNLGILGLPIWFTELDVSSINEYVRGEDLE 813 (921)
Q Consensus 741 ~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p----~---~~~i~~~l~~~a~~glpi~iTE~dv~~~~e~~qa~~~~ 813 (921)
...+. + .||||+..+=|..+ . ...+...|+++...|+||.+.|+--+...........+
T Consensus 222 ----~g~~~---------~-~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~ 287 (315)
T TIGR01370 222 ----HGGLA---------A-TVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMK 287 (315)
T ss_pred ----ccchh---------h-hceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHH
Confidence 00011 1 38999887754321 1 22355667777777999999999655332222334445
Q ss_pred HHHHHHHcC
Q 002447 814 VMLREAFAH 822 (921)
Q Consensus 814 ~~l~~~~s~ 822 (921)
++.+.|.++
T Consensus 288 ~~~~~~~~~ 296 (315)
T TIGR01370 288 DAAEKARAA 296 (315)
T ss_pred HHHHHHHHc
Confidence 566666553
No 65
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=82.20 E-value=7.7 Score=48.56 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=64.4
Q ss_pred HhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeE-EecccccchhhhcCCCHHHHHHHHHHHHHH
Q 002447 601 TKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCI-FWEVQATVQPWIQSLNKNDLMTAVQNRLTG 679 (921)
Q Consensus 601 ~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L-~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~ 679 (921)
..++|+++. ..|-..+.++++|.+.||-|.=-.. .||. .| ..++.++.+...|++
T Consensus 332 ~~n~N~vRt---------------sHyP~~~~~ydLcDelGllV~~Ea~~~~~~---~~------~~~~~~k~~~~~i~~ 387 (808)
T COG3250 332 EANMNSVRT---------------SHYPNSEEFYDLCDELGLLVIDEAMIETHG---MP------DDPEWRKEVSEEVRR 387 (808)
T ss_pred HcCCCEEEe---------------cCCCCCHHHHHHHHHhCcEEEEecchhhcC---CC------CCcchhHHHHHHHHH
Confidence 359999995 2455568899999999995543222 1221 11 234456778889999
Q ss_pred HHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEec
Q 002447 680 LLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVND 732 (921)
Q Consensus 680 v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Nd 732 (921)
++.|-+. .|..|=+-||..+++ -...+.++.++.+|...+.+.+
T Consensus 388 mver~knHPSIiiWs~gNE~~~g~---------~~~~~~~~~k~~d~~r~~~~~~ 433 (808)
T COG3250 388 MVERDRNHPSIIIWSLGNESGHGS---------NHWALYRWFKASDPTRPVQYEG 433 (808)
T ss_pred HHHhccCCCcEEEEeccccccCcc---------ccHHHHHHHhhcCCccceeccC
Confidence 9998775 699999999987653 1233444555555554444433
No 66
>PLN02705 beta-amylase
Probab=82.04 E-value=8.1 Score=45.70 Aligned_cols=64 Identities=6% Similarity=0.242 Sum_probs=49.9
Q ss_pred HHHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc-------c--cchhhhc
Q 002447 596 FVKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ-------A--TVQPWIQ 662 (921)
Q Consensus 596 y~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~-------~--~~P~W~~ 662 (921)
.+.+-.....-|.. ++-|+-+|+ .+++|+|+...++++.+++.||+++- +|-+|.- . .+|.|+.
T Consensus 274 L~aLK~aGVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV~ 347 (681)
T PLN02705 274 LSHMKSLNVDGVVV--DCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV-VMAFHEYGGNASGNVMISLPQWVL 347 (681)
T ss_pred HHHHHHcCCCEEEE--eeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEeeccCCCCCCcccccCCHHHH
Confidence 33343457787776 699999998 69999999999999999999999985 4566620 0 3789985
No 67
>PF14299 PP2: Phloem protein 2
Probab=80.92 E-value=19 Score=35.69 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=55.5
Q ss_pred ccccCceEEEEEEEEEccCc--ccceEEEEEEEEEcCCCccc-c-eEEEEEEEcCCCcEEEE-eEEEecCC-CceEEEEE
Q 002447 265 RVQRKLAYDVTAVVRIFGNN--VTTATVQATLWVQTPNQRDQ-Y-IVIANVQATDKDWAQLH-GKFLLNGS-PARVVIYM 338 (921)
Q Consensus 265 ~l~~g~~Y~~SawVk~~~~~--~~~~~~~~~l~~~~~~~~~~-y-~~i~~~~~~~~~Wt~l~-g~ft~~~~-~~~~~ly~ 338 (921)
.|.||++|.+..-+|+.... ....++.+++.+ .++... . ..+.-.....++|.+++ |+|..+.. ...+.+-+
T Consensus 55 ~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~--~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~ 132 (154)
T PF14299_consen 55 MLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKV--PDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSM 132 (154)
T ss_pred EcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEe--CCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEE
Confidence 48899999999999998653 223345656654 333221 1 12222234678999999 59998753 34554433
Q ss_pred -EcC--CCCccEEEeeEEecc
Q 002447 339 -EGP--PPGADILVNSLVVKH 356 (921)
Q Consensus 339 -e~~--~~~~~~yiDdv~l~~ 356 (921)
|.. .--.=|.|+.|.|.+
T Consensus 133 ~E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 133 YEVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred EEecCCcccCeEEEEEEEEec
Confidence 332 233458889888764
No 68
>PLN02905 beta-amylase
Probab=80.89 E-value=9.4 Score=45.32 Aligned_cols=64 Identities=6% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc---------ccchhhhcC
Q 002447 597 VKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ---------ATVQPWIQS 663 (921)
Q Consensus 597 ~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~---------~~~P~W~~~ 663 (921)
+.+-......|.. ++-|+-+|+ .|++|+|+...++++.+++.||+++- +|-+|.= -.+|.|+..
T Consensus 293 ~aLK~aGVdGVmv--DVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~e 366 (702)
T PLN02905 293 RILKSINVDGVKV--DCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV-VMSFHECGGNVGDDVCIPLPHWVAE 366 (702)
T ss_pred HHHHHcCCCEEEE--eeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3333457777776 699999998 68999999999999999999999985 4566620 037999753
No 69
>PF14299 PP2: Phloem protein 2
Probab=78.86 E-value=26 Score=34.63 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=53.4
Q ss_pred CCccCCceEEEEEEEEEcCCCCc--ccEEEEEEEEeecCCCce-e-EEEEeEEEecCccEEEE-eEEEecCC-CceEEEE
Q 002447 93 DKVSPGFTYLVSASVGVSGPHQG--SADVLATLKLEQRDSETS-Y-LFIGKTSVSKDNWENLE-GTFSLSAV-PDRIVFY 166 (921)
Q Consensus 93 ~~l~~g~tY~~S~~Vk~~~~~~~--~~~v~~~l~~~~~~~~~~-Y-~~i~~~~~~~~~Wt~l~-g~ft~~~~-~~~~~ly 166 (921)
..|.||.+|.+...+|+....-+ ...|.+.+.+. ++... . ..+.-.....++|.+++ |.|..+.. ...+.+-
T Consensus 54 ~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~--~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~ 131 (154)
T PF14299_consen 54 RMLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVP--DGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFS 131 (154)
T ss_pred eEcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeC--CCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEE
Confidence 56889999999999999665443 22455555543 22221 1 11222224578999999 68998864 3333222
Q ss_pred -EEc--CCCCcceEEeeEEEec
Q 002447 167 -LEG--PAPGVDLLIRSVVITC 185 (921)
Q Consensus 167 -~e~--~~~~~d~yvDdv~l~~ 185 (921)
.|. ..-..=+.|+-|.|.+
T Consensus 132 ~~E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 132 MYEVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred EEEecCCcccCeEEEEEEEEec
Confidence 222 2234457778777764
No 70
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=78.69 E-value=43 Score=33.60 Aligned_cols=133 Identities=9% Similarity=-0.020 Sum_probs=79.4
Q ss_pred CCChHHHHHH----Hhccceeecccccccc-cccccCC---cccc---hhhHHHHHHHHhcCCeeEEeeEEecccccchh
Q 002447 591 IDNEDFVKFF----TKYFNWAVFGNELKWY-WTESQQG---NFNY---KDADDMLDLCLNHNIQTRGHCIFWEVQATVQP 659 (921)
Q Consensus 591 ~~~~~y~~~~----~~~Fn~~t~eN~~kW~-~~ep~~G---~~~~---~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~ 659 (921)
....+.++.| .-+++.+++-....-. ...|.+. .+.- ...+.+++.|.++||+|.-..- ..|.
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~------~~~~ 90 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY------FDPD 90 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC------CCch
Confidence 4444444444 4488888743211111 1233333 1111 2468899999999999974321 2345
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecC
Q 002447 660 WIQSLNKNDLMTAVQNRLTGLLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDY 733 (921)
Q Consensus 660 W~~~~~~~~l~~~~~~~i~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy 733 (921)
|....+.+...+.-..-++++..+|+. .+..|=+-.|+...+ |. ..+..+..-+.+++..|+..++|.-|
T Consensus 91 ~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-~~---~~~~~~~l~~~lk~~s~~~Pv~ISpf 162 (166)
T PF14488_consen 91 YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-WN---APERFALLGKYLKQISPGKPVMISPF 162 (166)
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-cc---hHHHHHHHHHHHHHhCCCCCeEEecC
Confidence 555433333222222356677888886 499999999986654 32 24666777778889989888887655
No 71
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=77.92 E-value=0.17 Score=54.85 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=92.9
Q ss_pred cCCCCcCCCcccCCCC----------------CCCCCCCcEEEEEecccCCCCc----hhchhhhhccCcEEEEEEEEEE
Q 002447 402 TGSPHILPPMARDSLG----------------PHEPLSGHYILVTNRTQTWMGP----AQMITEKLKLFLTYQVAAWVRI 461 (921)
Q Consensus 402 ~~~~~~~~~~~~~~~~----------------~~~~~~G~~l~~~~Rt~~w~g~----~~~l~~~l~~g~~Y~vsawvr~ 461 (921)
+.+++||++++.++.| .+....||.|+|+.+.++|... .+.+..+++.++.-+++ |+
T Consensus 62 TpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~e~~~~~~~~~~e~hI~tV~~---rY 138 (345)
T COG3693 62 TPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFGDELSKEALAKMVEEHIKTVVG---RY 138 (345)
T ss_pred ccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeecccCCchhhccccChHHHHHHHHHHHHHHHH---hc
Confidence 3457889888877665 5578899999999999999853 46677777777776776 66
Q ss_pred cCCCCCceeEEEEEEeCCeEEecceEEEcCCCeEE-EEEEEEeecCCCeEEEEEeCCCCCceEEEeeeeeccCChHhHhh
Q 002447 462 GSGATGPQNVNIALGVDNQWVNGGQVEINDDRWHE-IGGSFRIEKQPSKVMVYIQGPASGIDVMVAGLQIFPVDREARFR 540 (921)
Q Consensus 462 ~~g~~~~~~v~~~l~~d~~~~~~g~~~~~~~~W~~-l~G~~~~~~~~~~~~iy~e~~~~~~~~~vDd~~i~~~~~~~~~~ 540 (921)
.+-...|++||..+. | .| ..+++.|++ +.|.-.|..+ +-....+.+...++++|+.+... +.. +.
T Consensus 139 kg~~~sWDVVNE~vd-d-----~g--~~R~s~w~~~~~gpd~I~~a----F~~AreadP~AkL~~NDY~ie~~-~~k-r~ 204 (345)
T COG3693 139 KGSVASWDVVNEAVD-D-----QG--SLRRSAWYDGGTGPDYIKLA----FHIAREADPDAKLVINDYSIEGN-PAK-RN 204 (345)
T ss_pred cCceeEEEecccccC-C-----Cc--hhhhhhhhccCCccHHHHHH----HHHHHhhCCCceEEeecccccCC-hHH-HH
Confidence 664334677787764 2 12 267889998 7777766642 22223456677888888886432 221 12
Q ss_pred hhhhcccceeccceEEEEecCCCCccCCceee
Q 002447 541 HLRRQTDKIRKRDVVLKLSGLDCSSMLGTFVK 572 (921)
Q Consensus 541 ~~~~~i~~~rk~~~~v~v~~~~g~p~~g~~v~ 572 (921)
....-|+..+ ..|.||.|+-++
T Consensus 205 ~~~nlI~~Lk----------ekG~pIDgiG~Q 226 (345)
T COG3693 205 YVLNLIEELK----------EKGAPIDGIGIQ 226 (345)
T ss_pred HHHHHHHHHH----------HCCCCccceeee
Confidence 2223333322 457788776544
No 72
>PLN02801 beta-amylase
Probab=77.21 E-value=4.4 Score=47.00 Aligned_cols=63 Identities=10% Similarity=0.306 Sum_probs=49.0
Q ss_pred HHHHHhccceeecccccccccccc-cCCcccchhhHHHHHHHHhcCCeeEEeeEEeccc------c---cchhhhc
Q 002447 597 VKFFTKYFNWAVFGNELKWYWTES-QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ------A---TVQPWIQ 662 (921)
Q Consensus 597 ~~~~~~~Fn~~t~eN~~kW~~~ep-~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~------~---~~P~W~~ 662 (921)
+.+-......|.. ++-|+-+|+ .|++|||+...++++.+++.||+++. +|-.|.= . ..|.|+.
T Consensus 44 ~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 116 (517)
T PLN02801 44 KRLKEAGVDGVMV--DVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA-IMSFHQCGGNVGDAVNIPIPQWVR 116 (517)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3333457777776 699999997 59999999999999999999999985 4556620 0 3699985
No 73
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=76.84 E-value=3.1 Score=47.15 Aligned_cols=95 Identities=5% Similarity=0.236 Sum_probs=61.3
Q ss_pred HHHHHHhccceeeccccccccccccc-CCcccchhhHHHHHHHHhcCCeeEEeeEEeccc---------ccchhhhcC--
Q 002447 596 FVKFFTKYFNWAVFGNELKWYWTESQ-QGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQ---------ATVQPWIQS-- 663 (921)
Q Consensus 596 y~~~~~~~Fn~~t~eN~~kW~~~ep~-~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~---------~~~P~W~~~-- 663 (921)
.+++-......|.. ++-|+-+|+. |++|||+..+++++.+++.||+++- +|-.|.- -..|.|+..
T Consensus 22 L~~LK~~GV~GVmv--dvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~-vmsfH~cGgNvgD~~~IpLP~Wv~~~~ 98 (402)
T PF01373_consen 22 LRALKSAGVDGVMV--DVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQV-VMSFHQCGGNVGDDCNIPLPSWVWEIG 98 (402)
T ss_dssp HHHHHHTTEEEEEE--EEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEE-EEE-S-BSSSTTSSSEB-S-HHHHHHH
T ss_pred HHHHHHcCCcEEEE--EeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEeeecCCCCCCCccCCcCCHHHHhcc
Confidence 33443456777765 6899999997 8999999999999999999999985 3555521 046899852
Q ss_pred ------------------CC----HHHHHHHHHHHHHHHHHHcCCeeeEEEeeccc
Q 002447 664 ------------------LN----KNDLMTAVQNRLTGLLARYKGKFRHYDVNNEM 697 (921)
Q Consensus 664 ------------------~~----~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~ 697 (921)
++ .-. .+...+|++....+|+..+ +++-|+
T Consensus 99 ~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 99 KKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred ccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 11 112 5677888888888877554 555554
No 74
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=75.39 E-value=24 Score=40.56 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=85.3
Q ss_pred EeeeeeccCChHhHhhhhhhcccceeccceEEEEecCCCCccCCceeeEeeecCCCCeeeccCCCCCCChHHHHHHHhcc
Q 002447 525 VAGLQIFPVDREARFRHLRRQTDKIRKRDVVLKLSGLDCSSMLGTFVKVKQTQNSFPIGSCINRSQIDNEDFVKFFTKYF 604 (921)
Q Consensus 525 vDd~~i~~~~~~~~~~~~~~~i~~~rk~~~~v~v~~~~g~p~~g~~v~v~~~~~~F~fG~a~~~~~~~~~~y~~~~~~~F 604 (921)
++-|....|++++|...+++ +|++--|...+|.= |-|+-..... .|
T Consensus 73 ~~~F~p~~fD~~~Wa~~~k~----------------------AGakY~vlTaKHHD--GF~lw~S~~t----------~~ 118 (384)
T smart00812 73 APQFTAEKFDPEEWADLFKK----------------------AGAKYVVLTAKHHD--GFCLWDSKYS----------NW 118 (384)
T ss_pred HhcCCchhCCHHHHHHHHHH----------------------cCCCeEEeeeeecC--CccccCCCCC----------CC
Confidence 44566667899999887643 35665566666653 3344332211 24
Q ss_pred ceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEE-ee-EEecccccchhhhcC-------CCHHHHHHH---
Q 002447 605 NWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRG-HC-IFWEVQATVQPWIQS-------LNKNDLMTA--- 672 (921)
Q Consensus 605 n~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrg-H~-L~W~~~~~~P~W~~~-------~~~~~l~~~--- 672 (921)
|.+. +.+ .-...-++++.|+++||++-- |. +-|+. |.|... ...+...+.
T Consensus 119 n~~~----~~p----------krDiv~el~~A~rk~Glk~G~Y~S~~DW~~----p~y~~~~~~~~~~~~~~~~~~y~~~ 180 (384)
T smart00812 119 NAVD----TGP----------KRDLVGELADAVRKRGLKFGLYHSLFDWFN----PLYAGPTSSDEDPDNWPRFQEFVDD 180 (384)
T ss_pred cccC----CCC----------CcchHHHHHHHHHHcCCeEEEEcCHHHhCC----CccccccccccccccchhHHHHHHH
Confidence 4442 111 124567899999999998732 22 34443 333210 011122333
Q ss_pred HHHHHHHHHHHcCCeeeEEEeeccccccCcccccCChh-HHHHHHHHHHhcCCCc-eEEEec
Q 002447 673 VQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKD-IRAYMFKTAHQLDLSA-TLFVND 732 (921)
Q Consensus 673 ~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~~lg~~-~~~~af~~ar~~dP~a-~L~~Nd 732 (921)
+..+|++++++|+..+--+|...+. .+.. -....++++|+..|++ .+++|+
T Consensus 181 ~~~Ql~ELit~Ygpd~lWfD~~~~~---------~~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 181 WLPQLRELVTRYKPDLLWFDGGWEA---------PDDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred HHHHHHHHHhcCCCceEEEeCCCCC---------ccchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 4899999999999866666754321 1111 2567888999999988 456664
No 75
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=73.06 E-value=1e+02 Score=33.37 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=102.0
Q ss_pred CChHHHHHHHhccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEee---------EEeccc--ccchhh
Q 002447 592 DNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHC---------IFWEVQ--ATVQPW 660 (921)
Q Consensus 592 ~~~~y~~~~~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~---------L~W~~~--~~~P~W 660 (921)
.+..+.++..+.|..++.+ .....|.-+ .-.-.=|.-.+++|..+.+.. ..|... ...|+|
T Consensus 32 ~d~~~~~i~~~~f~llVVD----ps~~g~~~~----~~~~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~w 103 (300)
T COG2342 32 QDAYINEILNSPFDLLVVD----PSYCGPFNT----PWTIEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDW 103 (300)
T ss_pred ccchHHHHhcCCCcEEEEe----ccccCCCCC----cCcHHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCccc
Confidence 3556778888999999953 222222222 223344566777884443211 123211 246788
Q ss_pred hcCCCH------------HHHHHHHHHHHHHHHHH-cC----CeeeEEEeeccccccCcccccCC-------hhHHHHHH
Q 002447 661 IQSLNK------------NDLMTAVQNRLTGLLAR-YK----GKFRHYDVNNEMLHGSFYQDKLG-------KDIRAYMF 716 (921)
Q Consensus 661 ~~~~~~------------~~l~~~~~~~i~~v~~r-Y~----g~v~~WDVvNE~~~~~~~~~~lg-------~~~~~~af 716 (921)
+-.-+| .+-++.+..+.+++... |. +.|+.|.-|=+. ....+ ..++.+.-
T Consensus 104 Lg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~------~~~~~~~~~k~m~~~i~~i~ 177 (300)
T COG2342 104 LGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWN------DRETGVNAAKKMVKFIAAIA 177 (300)
T ss_pred ccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceEEEeeechHHHHHHh------cccccccHHHHHHHHHHHHH
Confidence 754322 24566666777766642 33 344444111110 11112 13566666
Q ss_pred HHHHhcCCCceEEEecCC-CcCCCCCCCCHHHHHHHHHHHHH---CCCceeeEEeeccCC---CC--CHHHHHHHHHHHh
Q 002447 717 KTAHQLDLSATLFVNDYH-VEDGCDPRSSPEKYIEHILNLQE---QGAPVGGIGIQGHID---SP--VGPIVCSALDNLG 787 (921)
Q Consensus 717 ~~ar~~dP~a~L~~Ndy~-~~~~~~~~~~~~~~~~~i~~l~~---~g~piDgIG~Q~H~~---~p--~~~~i~~~l~~~a 787 (921)
.++|++.|...++.|--. +.... . -+|+. .|.-++- -+. .| .....++.|+++.
T Consensus 178 ~~~ra~~~~~~Vi~qng~~l~d~~-----------~-a~l~~~~~~~~~vE~-----~~~d~~~~~~~~~~~e~~Lr~l~ 240 (300)
T COG2342 178 EYARAANPLFRVIPQNGAELFDAD-----------G-AGLLPRLGFGVAVET-----VFYDDERPLESADTFEEYLRKLC 240 (300)
T ss_pred HHHHhcCCcEEEEecccHhhcCcc-----------c-cchhhccccceEEEE-----EEecCccCCCchhhHHHHHHHHH
Confidence 788999999777665311 11100 0 11111 1111111 111 12 1345679999999
Q ss_pred hcCCCEEEeeeccCCCCccchHHHHHHHHHHHHc
Q 002447 788 ILGLPIWFTELDVSSINEYVRGEDLEVMLREAFA 821 (921)
Q Consensus 788 ~~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s 821 (921)
++|+||.+-|++....++.. ..+++++..+.+
T Consensus 241 ~~G~~V~vieY~~d~~~~~~--~r~~~~~~ktr~ 272 (300)
T COG2342 241 RLGKPVYVIEYALDPTDPRE--SRLEDLFEKTRA 272 (300)
T ss_pred hcCCcEEEEEecCCCCchhh--HHHHHHHHHhhc
Confidence 99999999999888655433 455555555433
No 76
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=72.12 E-value=19 Score=36.37 Aligned_cols=137 Identities=8% Similarity=0.035 Sum_probs=67.1
Q ss_pred CCCCCCCC-CCcccCCceeEEeecCCCCcCCCcccCCCCCCCCCCCcEEEEEecccCCCCchhchh---hhhc--cCcEE
Q 002447 380 NSELSDGT-NGWFPLGNCTLSIGTGSPHILPPMARDSLGPHEPLSGHYILVTNRTQTWMGPAQMIT---EKLK--LFLTY 453 (921)
Q Consensus 380 n~~FE~g~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~Rt~~w~g~~~~l~---~~l~--~g~~Y 453 (921)
.-+||++. ..|......+|++++. +.++|.++|.|.-....=-.+..++. +... .+..=
T Consensus 9 ~~~Fe~~vp~~~~~~~~s~LslS~~---------------hyK~G~~SL~W~w~~gs~l~i~~~~~~~~~~~~~k~~g~~ 73 (178)
T PF09092_consen 9 MFDFENQVPDAFTTSQGSTLSLSDE---------------HYKDGKQSLKWNWQPGSTLTISKPLGFEPDAPTSKDGGRS 73 (178)
T ss_dssp EC-SSSTTTTCTEEECCEEEEEESS---------------S-SSTT-EEEEEEECCEEEEEES-B----HHCCCCHHTCC
T ss_pred eeccccCCCcceEecCCceEEeCHh---------------HhhCCccccEEEcCCCCEEEEecccccccccccccccCcc
Confidence 35788875 6777766678999863 46677889998754332111222211 1111 11112
Q ss_pred EEEEEEEEcCCCCCceeEEEEEEeC----CeEEecceEEEc----CCCeEEEEEEEEeecCC---CeEEEEEeCC--CCC
Q 002447 454 QVAAWVRIGSGATGPQNVNIALGVD----NQWVNGGQVEIN----DDRWHEIGGSFRIEKQP---SKVMVYIQGP--ASG 520 (921)
Q Consensus 454 ~vsawvr~~~g~~~~~~v~~~l~~d----~~~~~~g~~~~~----~~~W~~l~G~~~~~~~~---~~~~iy~e~~--~~~ 520 (921)
.|.+||+-....+ +.+++.+..+ +.......+.+. +++|+.+.-...-.... .-..|.|..| ...
T Consensus 74 ~~~~WIYNe~p~~--~~l~f~F~~~~~~t~~~~~~F~~~LNFtGWR~~WV~y~~Dm~g~~~~g~~~md~l~i~AP~~~~~ 151 (178)
T PF09092_consen 74 AFIFWIYNEKPQD--DKLRFEFGKGLINTGKPCYWFPFNLNFTGWRAAWVSYERDMQGRPEEGSKDMDSLRITAPANDPS 151 (178)
T ss_dssp EEEEEEEESS--S--SEEEEEEECT--TTTEECEEEEEE---SEEEEEEEETTTTSEE---TT-----EEEEE--TTSSE
T ss_pred eEEEEEECCCCcC--CeEEEEecCCcccCCccceEEEEEeecccceeeeeeehhhccCCcccCcceeeEEEEEccccCCC
Confidence 3999999766443 5577776654 432222222233 44555444321111111 1235667776 566
Q ss_pred ceEEEeeeeeccC
Q 002447 521 IDVMVAGLQIFPV 533 (921)
Q Consensus 521 ~~~~vDd~~i~~~ 533 (921)
..+|+|-+.+...
T Consensus 152 G~lf~D~l~~~~~ 164 (178)
T PF09092_consen 152 GTLFFDRLIFSVK 164 (178)
T ss_dssp EEEEEEEEEEEEE
T ss_pred ccEEEEEEeeccc
Confidence 7799999888543
No 77
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=71.95 E-value=13 Score=32.67 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=34.0
Q ss_pred cccccCCCccEEEeecceeEEEEEecCCc-eEEEEEEEeCCCCcEEEEEEe
Q 002447 870 AQGHVDEQGEFAFRGFHGTYTIVIPTLHK-KIVKTFVVDKGESPLVVTIDL 919 (921)
Q Consensus 870 ~~~~t~~~G~~~~r~f~G~y~v~v~~~~~-~~~~~~~l~~~~~~~~~~~~~ 919 (921)
....||++|.|.+..-.|+|.|.+++.|= .....+.+..+. ...++|.|
T Consensus 27 ~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~~~~~i~~~~~~-~~~~~i~L 76 (88)
T PF13715_consen 27 KGTVTDENGRFSIKLPEGDYTLKISYIGYETKTITISVNSNK-NTNLNIYL 76 (88)
T ss_pred ceEEECCCeEEEEEEcCCCeEEEEEEeCEEEEEEEEEecCCC-EEEEEEEE
Confidence 44679999999999889999999998873 344455553332 23444444
No 78
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=69.70 E-value=68 Score=35.69 Aligned_cols=156 Identities=9% Similarity=0.108 Sum_probs=90.5
Q ss_pred cchhhHHHHHHHHhcCCeeEEeeEEeccc--------ccchhhhc--------C----------CC--HHHHHHHHHHHH
Q 002447 626 NYKDADDMLDLCLNHNIQTRGHCIFWEVQ--------ATVQPWIQ--------S----------LN--KNDLMTAVQNRL 677 (921)
Q Consensus 626 ~~~~~D~~v~~a~~~gi~vrgH~L~W~~~--------~~~P~W~~--------~----------~~--~~~l~~~~~~~i 677 (921)
.|..+..+|+-|.++||+|++=. -.... ...|.|+. . ++ .++.++.+.+-|
T Consensus 68 g~DpL~~~I~eaHkrGlevHAW~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v 146 (311)
T PF02638_consen 68 GFDPLEFMIEEAHKRGLEVHAWF-RVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV 146 (311)
T ss_pred CccHHHHHHHHHHHcCCEEEEEE-EeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH
Confidence 47789999999999999997532 11100 12355642 1 12 357899999999
Q ss_pred HHHHHHcCCeeeEEE-ee---ccc----cccCcccccCC--------------------hhHHHHHHHHHHhcCCCceEE
Q 002447 678 TGLLARYKGKFRHYD-VN---NEM----LHGSFYQDKLG--------------------KDIRAYMFKTAHQLDLSATLF 729 (921)
Q Consensus 678 ~~v~~rY~g~v~~WD-Vv---NE~----~~~~~~~~~lg--------------------~~~~~~af~~ar~~dP~a~L~ 729 (921)
++++++|.=.=.++| .. .+. .....|++..| .++++..++.+|+..|++++-
T Consensus 147 ~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~s 226 (311)
T PF02638_consen 147 KEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFS 226 (311)
T ss_pred HHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999999971111222 00 000 00001221111 136788999999999999988
Q ss_pred EecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCC-CCC-HHHHHHHHHHHhh
Q 002447 730 VNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHID-SPV-GPIVCSALDNLGI 788 (921)
Q Consensus 730 ~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~-~p~-~~~i~~~l~~~a~ 788 (921)
+-=++.... .-..+++-....+++|. ||-|=.|.+.. ... ...+...+...+.
T Consensus 227 isp~g~~~~-----~y~~~~qD~~~W~~~G~-iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~ 281 (311)
T PF02638_consen 227 ISPFGIWNS-----AYDDYYQDWRNWLKEGY-IDYIVPQIYWSDFSHFTAPYEQLAKWWAK 281 (311)
T ss_pred EEeecchhh-----hhhheeccHHHHHhcCC-ccEEEeeecccccchhHHHHHHHHHHHHH
Confidence 754433210 11233333445556786 99999999976 332 3345555555543
No 79
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=69.52 E-value=59 Score=30.37 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=46.0
Q ss_pred ccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEE----cCCCcEEEEeEEEecCCCceEEEEEEc
Q 002447 265 RVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQA----TDKDWAQLHGKFLLNGSPARVVIYMEG 340 (921)
Q Consensus 265 ~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~----~~~~Wt~l~g~ft~~~~~~~~~ly~e~ 340 (921)
.+..+.+|.|++.+....+ . -++.|++...++ ..++.+.+ .-+.|++++..+.++.....|.|.+.+
T Consensus 40 d~~~~g~y~~~~~~a~~~~---~--~~~~l~id~~~g----~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 40 DVPEAGTYTLTIRYANGGG---G--GTIELRIDGPDG----TLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EESSSEEEEEEEEEEESSS---S--EEEEEEETTTTS----EEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEEESS
T ss_pred eeCCCceEEEEEEEECCCC---C--cEEEEEECCCCC----cEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEEEEC
Confidence 4667889999977755543 2 234555532122 12333322 233577788887777755545444443
Q ss_pred CCCCccEEEeeEEec
Q 002447 341 PPPGADILVNSLVVK 355 (921)
Q Consensus 341 ~~~~~~~yiDdv~l~ 355 (921)
... ..+.||-|+|.
T Consensus 111 ~~~-~~~niD~~~f~ 124 (125)
T PF03422_consen 111 GDG-WAFNIDYFQFT 124 (125)
T ss_dssp SSS-B-EEEEEEEEE
T ss_pred CCC-ceEEeEEEEEE
Confidence 222 56899999885
No 80
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=68.21 E-value=20 Score=34.36 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=11.7
Q ss_pred eEEEEEEEEEccCc
Q 002447 271 AYDVTAVVRIFGNN 284 (921)
Q Consensus 271 ~Y~~SawVk~~~~~ 284 (921)
.++++||||.+...
T Consensus 2 ~fTv~aWv~~~~~~ 15 (133)
T smart00560 2 SFTLEAWVKLESAG 15 (133)
T ss_pred cEEEEEEEeecccC
Confidence 58999999998753
No 81
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=64.08 E-value=61 Score=32.64 Aligned_cols=141 Identities=11% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCCCCCCCCceecCccc-eEEecccCCCCCcccCCCceEEEEe---cccccccccccccc--CCccCCceEEEEEEEEE
Q 002447 36 NNDFSMGLHSWHPNCCHA-FIASAESHYPEGTSANSVGNHAVVT---NRKECWQGLEQDIT--DKVSPGFTYLVSASVGV 109 (921)
Q Consensus 36 n~~FE~G~~~W~~~g~~~-~v~~~~~~~~~~~~~~sG~~sl~vt---~Rt~~w~G~~q~i~--~~l~~g~tY~~S~~Vk~ 109 (921)
.-+|.++..||...|.-. .+.+ .+. .-....|+.+|++. ....+|+-.-+ +. ..|.....-++.+++=-
T Consensus 10 ~~~f~~~~~g~~~~G~~q~~~~~-~~i---~~~~~~g~gaLklnv~~~~~~~W~E~ki-~~~~~dls~~~~l~fDv~iP~ 84 (170)
T PF09212_consen 10 DFSFDDSIEGWQNNGTWQASFSS-PSI---SHSGDGGSGALKLNVDFDGNNDWDELKI-FKNFEDLSEYNRLEFDVYIPK 84 (170)
T ss_dssp ---SGGGGGGEEEEEEES-EEEE-EEE---EEESSGGGSEEEEEEEE-TTSTTEEEEE-CCEECCGCC--EEEEEEEEEH
T ss_pred EecCCccccchhhCCcccccccc-Cce---eEeccCCCccEEEEeecCCCCCcchhhh-hhhhhhcCCccEEEEEEEeCC
Confidence 567888889998655211 1111 000 00123577788772 34446877555 32 56666777777766654
Q ss_pred cCCCCcccEEEEEEEEeecCCCcee------EEEE---eEEEecCccEEEEeEEEecCCC--ceEEEEEEcCC--CCcce
Q 002447 110 SGPHQGSADVLATLKLEQRDSETSY------LFIG---KTSVSKDNWENLEGTFSLSAVP--DRIVFYLEGPA--PGVDL 176 (921)
Q Consensus 110 ~~~~~~~~~v~~~l~~~~~~~~~~Y------~~i~---~~~~~~~~Wt~l~g~ft~~~~~--~~~~ly~e~~~--~~~d~ 176 (921)
.....+ .++.+..+. +|- ..| ..+. .+.+...+..++..++.+.... ..+.|-+-|.. -.+.+
T Consensus 85 ~~~~~G--~l~~~a~l~-~gW-~k~g~~~~~~~v~dle~v~i~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG~~~~Y~GpI 160 (170)
T PF09212_consen 85 NEKYSG--SLKPYAALN-PGW-TKIGMDTTEINVKDLETVTIDGKGYKKIHVSIEFDSSKKATQLVLQIVGSNLDYNGPI 160 (170)
T ss_dssp HCCSSS--EE-EEEEEC-TTT-EEECCCSCEEECCCSEEEEETTEEEEEEEEEEE--SSCCE-EEEEEEEEES--EEEEE
T ss_pred CCCCCc--cEEEEEEcC-CCh-HHhccccccccccccceEEECCeEEEEEEEEEEccccCCCCcEEEEEccccccccCCE
Confidence 332333 343333332 221 111 1111 2334567888888888887654 24444443432 25689
Q ss_pred EEeeEEEec
Q 002447 177 LIRSVVITC 185 (921)
Q Consensus 177 yvDdv~l~~ 185 (921)
|||||.|..
T Consensus 161 YIDNV~L~k 169 (170)
T PF09212_consen 161 YIDNVKLIK 169 (170)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEec
Confidence 999999853
No 82
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=63.51 E-value=9.2 Score=36.72 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=37.1
Q ss_pred cccccCCCccEEEeecceeEEEEEecCCce--EEEEEEEeCCCCcEEE
Q 002447 870 AQGHVDEQGEFAFRGFHGTYTIVIPTLHKK--IVKTFVVDKGESPLVV 915 (921)
Q Consensus 870 ~~~~t~~~G~~~~r~f~G~y~v~v~~~~~~--~~~~~~l~~~~~~~~~ 915 (921)
....|+..|.|.|....|.|.|++...+.. -...|.|..++.+-+|
T Consensus 39 as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGTL 86 (134)
T PF08400_consen 39 ASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGTL 86 (134)
T ss_pred EEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecCCCCCcH
Confidence 456789999999999999999999988764 3578888877665444
No 83
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=63.42 E-value=15 Score=38.84 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcC-----CeeeEEEeeccccc-----cCcccccCC-hhHHHHHHH---HHHhcCCCceEE
Q 002447 672 AVQNRLTGLLARYK-----GKFRHYDVNNEMLH-----GSFYQDKLG-KDIRAYMFK---TAHQLDLSATLF 729 (921)
Q Consensus 672 ~~~~~i~~v~~rY~-----g~v~~WDVvNE~~~-----~~~~~~~lg-~~~~~~af~---~ar~~dP~a~L~ 729 (921)
.+.++|..++.+|+ +.|+.|.+=|||.. ...-.+.++ +|++.+.++ ++|++||+|+|+
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 45666777777776 35999999999963 111112222 467666665 556789999998
No 84
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=61.74 E-value=1.1e+02 Score=28.44 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=45.5
Q ss_pred CccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecC-CCceeEEEE-eEEEecCccEEEEeEEEecCCCceEEEEEEcCC
Q 002447 94 KVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRD-SETSYLFIG-KTSVSKDNWENLEGTFSLSAVPDRIVFYLEGPA 171 (921)
Q Consensus 94 ~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~-~~~~Y~~i~-~~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~~ 171 (921)
.+..+.+|.|++.+....+. ..+ .|++ ++ .+.....+. ...-.-..|++++....++...-.|.|.+.+..
T Consensus 40 d~~~~g~y~~~~~~a~~~~~---~~~--~l~i--d~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 40 DVPEAGTYTLTIRYANGGGG---GTI--ELRI--DGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLVFNGGD 112 (125)
T ss_dssp EESSSEEEEEEEEEEESSSS---EEE--EEEE--TTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEEESSSS
T ss_pred eeCCCceEEEEEEEECCCCC---cEE--EEEE--CCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEEEECCC
Confidence 36677899999777665443 233 3433 32 222222221 111123467778777777775555544443322
Q ss_pred CCcceEEeeEEEec
Q 002447 172 PGVDLLIRSVVITC 185 (921)
Q Consensus 172 ~~~d~yvDdv~l~~ 185 (921)
. .-+.||.++|++
T Consensus 113 ~-~~~niD~~~f~k 125 (125)
T PF03422_consen 113 G-WAFNIDYFQFTK 125 (125)
T ss_dssp S-B-EEEEEEEEEE
T ss_pred C-ceEEeEEEEEEC
Confidence 2 568999998863
No 85
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=61.14 E-value=1.4e+02 Score=36.55 Aligned_cols=152 Identities=16% Similarity=0.255 Sum_probs=75.6
Q ss_pred eecCCCceEEEEEeecCCCc-eeeeeeccccccC--ceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEE--
Q 002447 237 IVPLSGKVFASATERTQSWN-GIQQEITGRVQRK--LAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANV-- 311 (921)
Q Consensus 237 ~~~~~G~~sl~vt~Rt~~w~-G~~~~v~~~l~~g--~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~-- 311 (921)
..+++|+++. -+++....+ .+...| .|..+ .+.+|-+|..+..+ .....| .+ + ..+++..+..+...
T Consensus 335 ~~P~~G~~~w-~Sg~Gd~l~~tLt~~v--dLp~~s~AtLsfk~wydIE~d-yDy~~V--ev-v-StdGg~Twt~~~g~~~ 406 (645)
T PF05547_consen 335 VKPASGSYAW-YSGSGDDLNNTLTRSV--DLPAASSATLSFKAWYDIEAD-YDYAYV--EV-V-STDGGKTWTPLPGNTT 406 (645)
T ss_pred cCCCCCceEE-EECCCcchhhheeeee--ccCCCCCeEEEeehheecccC-CceEEE--EE-E-EcCCCceeEecCcccc
Confidence 3567777643 455555433 444444 23333 34455556555543 122222 21 2 23444444433211
Q ss_pred ------EEcCCCcEEEEeEEEecCCC-ceEEEEE--EcCC--CCccEEEeeEEeccccCCCCCCCCcccCCCccceeeeC
Q 002447 312 ------QATDKDWAQLHGKFLLNGSP-ARVVIYM--EGPP--PGADILVNSLVVKHAEKIPPSPPPVIENPAFGVNIITN 380 (921)
Q Consensus 312 ------~~~~~~Wt~l~g~ft~~~~~-~~~~ly~--e~~~--~~~~~yiDdv~l~~~~~~~~~~~p~~~~~~~~~~ii~n 380 (921)
...++.|+.++ |-|++-+ .++.|-| .+-. ...=||||||+|.... ..+..
T Consensus 407 ~~~~~~~~~sg~Wv~~~--~DLSayAGqtV~LrFrY~TD~~v~~~G~~vDdi~v~~dG-----------------~~v~~ 467 (645)
T PF05547_consen 407 GNGNPNGGSSGGWVDAS--FDLSAYAGQTVQLRFRYVTDGGVAGRGFYVDDIRVTADG-----------------TTVFS 467 (645)
T ss_pred ccCCCCCCCccceeEeE--eccccccCCeEEEEEEEEcCCCccCCcEEEEEEEEEECC-----------------EEEee
Confidence 01235799988 5555422 2344433 3322 3445999999997332 23334
Q ss_pred CCCCCCCCCcccCCceeEEeecCCCCcCCCcccCCCCCCCCCCCcEEEEEecccC
Q 002447 381 SELSDGTNGWFPLGNCTLSIGTGSPHILPPMARDSLGPHEPLSGHYILVTNRTQT 435 (921)
Q Consensus 381 ~~FE~g~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~Rt~~ 435 (921)
-+.|. ..+|...| ++.+.+ ....-+|.++..|+..
T Consensus 468 DdaE~-~~~~~~~G---F~~~~g----------------~~~~~~yYl~e~R~~~ 502 (645)
T PF05547_consen 468 DDAEG-DNGWTLNG---FTRSDG----------------TREYDHYYLAEWRSYN 502 (645)
T ss_pred cCCcC-CCCceEee---EEeCCC----------------cccCCcEeEeeccccc
Confidence 45555 66776655 333321 1223478888999863
No 86
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=60.84 E-value=91 Score=32.74 Aligned_cols=80 Identities=5% Similarity=-0.035 Sum_probs=46.5
Q ss_pred ecCCCceEEEEEeecCCCceeeeee---c-cccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEE
Q 002447 238 VPLSGKVFASATERTQSWNGIQQEI---T-GRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQA 313 (921)
Q Consensus 238 ~~~~G~~sl~vt~Rt~~w~G~~~~v---~-~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~ 313 (921)
....|.++|.|.-+=..+..-...+ . ..--+|...+|+.||.-.+. .. .+.+.+++..|...-..++..
T Consensus 70 ~~~~~~~vLgV~~~F~~~g~n~~~~~~p~~~Ipi~g~~k~I~vWV~G~n~---~h--~L~v~lrD~~G~~~~l~~G~L-- 142 (217)
T PF04620_consen 70 QVRAGEKVLGVRYDFPRRGNNSVAFIRPPFPIPIPGVIKSISVWVYGDNY---PH--WLEVLLRDAKGEVHQLPLGSL-- 142 (217)
T ss_pred cccCCCcEEEEEEEeecCCCceEEEEcCCcceeccceeEEEEEEEECCCC---Cc--eEEEEEEcCCCCEEEEEeeee--
Confidence 3456667766654222222111111 1 12348899999999987764 33 445666677776554555543
Q ss_pred cCCCcEEEEeE
Q 002447 314 TDKDWAQLHGK 324 (921)
Q Consensus 314 ~~~~Wt~l~g~ 324 (921)
.=.+|.+|+..
T Consensus 143 ~f~GWK~L~~~ 153 (217)
T PF04620_consen 143 NFDGWKNLTVN 153 (217)
T ss_pred cCCceeEEEEE
Confidence 45589999854
No 87
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=60.16 E-value=49 Score=31.60 Aligned_cols=23 Identities=22% Similarity=0.637 Sum_probs=15.1
Q ss_pred CccEEEEeEEEecCCCceEEEEEEc
Q 002447 145 DNWENLEGTFSLSAVPDRIVFYLEG 169 (921)
Q Consensus 145 ~~Wt~l~g~ft~~~~~~~~~ly~e~ 169 (921)
+.|..|.++|.- ....+.||+.|
T Consensus 61 ~~W~hva~v~d~--~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDG--GAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEEC--CCCeEEEEECC
Confidence 778888877663 23456677755
No 88
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=60.00 E-value=1.1e+02 Score=37.59 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=66.2
Q ss_pred cccCCCceEEEEecccccc-ccccccccCCccCCceEEEEEEEEEcCCCCcccEEEEEEE-EeecCCCceeEEEE-eE--
Q 002447 66 TSANSVGNHAVVTNRKECW-QGLEQDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLK-LEQRDSETSYLFIG-KT-- 140 (921)
Q Consensus 66 ~~~~sG~~sl~vt~Rt~~w-~G~~q~i~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~-~~~~~~~~~Y~~i~-~~-- 140 (921)
..+++|+++. .+++..+. +.+.+.| .|..+..=+|+++...+-... .. .+++. ++ .+++..+..+. ..
T Consensus 335 ~~P~~G~~~w-~Sg~Gd~l~~tLt~~v--dLp~~s~AtLsfk~wydIE~d--yD-y~~VevvS-tdGg~Twt~~~g~~~~ 407 (645)
T PF05547_consen 335 VKPASGSYAW-YSGSGDDLNNTLTRSV--DLPAASSATLSFKAWYDIEAD--YD-YAYVEVVS-TDGGKTWTPLPGNTTG 407 (645)
T ss_pred cCCCCCceEE-EECCCcchhhheeeee--ccCCCCCeEEEeehheecccC--Cc-eEEEEEEE-cCCCceeEecCccccc
Confidence 3467776644 35555443 2333333 233333445666666544332 11 12233 33 34445554432 11
Q ss_pred -----EEecCccEEEEeEEEecC--CC-ceEEEEEEcCC--CCcceEEeeEEEecCCCCCCCCCCcccccCCCCceEeCC
Q 002447 141 -----SVSKDNWENLEGTFSLSA--VP-DRIVFYLEGPA--PGVDLLIRSVVITCSSPSECENKSIGCNIAGDENIILNP 210 (921)
Q Consensus 141 -----~~~~~~Wt~l~g~ft~~~--~~-~~~~ly~e~~~--~~~d~yvDdv~l~~~~~~~~~~~~~~~~~~~~~~~v~n~ 210 (921)
..+++.|..++ |-|++ .. -.+++-..+-. ...=||||||+|+.. +..+...
T Consensus 408 ~~~~~~~~sg~Wv~~~--~DLSayAGqtV~LrFrY~TD~~v~~~G~~vDdi~v~~d-----------------G~~v~~D 468 (645)
T PF05547_consen 408 NGNPNGGSSGGWVDAS--FDLSAYAGQTVQLRFRYVTDGGVAGRGFYVDDIRVTAD-----------------GTTVFSD 468 (645)
T ss_pred cCCCCCCCccceeEeE--eccccccCCeEEEEEEEEcCCCccCCcEEEEEEEEEEC-----------------CEEEeec
Confidence 11236796666 55554 22 24455554543 244599999999842 2234556
Q ss_pred CcCCCCCCeeeecc
Q 002447 211 KFEDGLNNWSGRGC 224 (921)
Q Consensus 211 ~FE~G~~gW~~~g~ 224 (921)
+.|. ..+|...|-
T Consensus 469 daE~-~~~~~~~GF 481 (645)
T PF05547_consen 469 DAEG-DNGWTLNGF 481 (645)
T ss_pred CCcC-CCCceEeeE
Confidence 6676 777877763
No 89
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=56.92 E-value=45 Score=32.09 Aligned_cols=91 Identities=15% Similarity=0.320 Sum_probs=57.0
Q ss_pred hHHHHHHH-hccceeec--c--ccccccc--ccccCCcccchhhHHHHHHHHhcCCeeEEee-EEeccc--ccchhhhcC
Q 002447 594 EDFVKFFT-KYFNWAVF--G--NELKWYW--TESQQGNFNYKDADDMLDLCLNHNIQTRGHC-IFWEVQ--ATVQPWIQS 663 (921)
Q Consensus 594 ~~y~~~~~-~~Fn~~t~--e--N~~kW~~--~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~-L~W~~~--~~~P~W~~~ 663 (921)
+.+.+.++ .+-|++++ . +.+-|+. +.++.-.......-++++.|+++||+|-+.. +.|+.. ..-|+|+..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 45666665 58999886 2 3333333 2222222334556789999999999987653 456532 145888741
Q ss_pred ---------------------CCHHHHHHHHHHHHHHHHHHcC
Q 002447 664 ---------------------LNKNDLMTAVQNRLTGLLARYK 685 (921)
Q Consensus 664 ---------------------~~~~~l~~~~~~~i~~v~~rY~ 685 (921)
++ ...++.+...|+++++||.
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRYD 124 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcCC
Confidence 01 2345788889999999995
No 90
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=53.24 E-value=56 Score=36.98 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHhcCCeeEEe--eEEecccccchhhhcCC----------C--HHH-HHHHHHHHHHHHHHHcCCeeeEEE
Q 002447 628 KDADDMLDLCLNHNIQTRGH--CIFWEVQATVQPWIQSL----------N--KND-LMTAVQNRLTGLLARYKGKFRHYD 692 (921)
Q Consensus 628 ~~~D~~v~~a~~~gi~vrgH--~L~W~~~~~~P~W~~~~----------~--~~~-l~~~~~~~i~~v~~rY~g~v~~WD 692 (921)
...-++++.|+++||++--+ ..-|+.+. +.... . .++ ..+.+...++++++||.-.+.-+|
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHPD----YPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCTT----TTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCcc----cCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 34678999999999998533 23444322 11110 0 112 344888999999999943344556
Q ss_pred eeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEe
Q 002447 693 VNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVN 731 (921)
Q Consensus 693 VvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~N 731 (921)
..... ....--....++.+|+..|++.+.-+
T Consensus 214 g~~~~--------~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 214 GGWPD--------PDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp STTSC--------CCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCCc--------cccccCHHHHHHHHHHhCCeEEEecc
Confidence 54432 11122348889999999998877643
No 91
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=52.93 E-value=2.3e+02 Score=29.79 Aligned_cols=81 Identities=19% Similarity=0.109 Sum_probs=47.1
Q ss_pred cccCCCceEEEE----eccccccccccccccCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEE
Q 002447 66 TSANSVGNHAVV----TNRKECWQGLEQDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTS 141 (921)
Q Consensus 66 ~~~~sG~~sl~v----t~Rt~~w~G~~q~i~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~ 141 (921)
....+|.++|.| ..|..+|--........-.+|...+|++||.-++-. +.+.+.|+ +..|...-..++ .
T Consensus 69 ~~~~~~~~vLgV~~~F~~~g~n~~~~~~p~~~Ipi~g~~k~I~vWV~G~n~~---h~L~v~lr--D~~G~~~~l~~G--~ 141 (217)
T PF04620_consen 69 NQVRAGEKVLGVRYDFPRRGNNSVAFIRPPFPIPIPGVIKSISVWVYGDNYP---HWLEVLLR--DAKGEVHQLPLG--S 141 (217)
T ss_pred ccccCCCcEEEEEEEeecCCCceEEEEcCCcceeccceeEEEEEEEECCCCC---ceEEEEEE--cCCCCEEEEEee--e
Confidence 356788888866 455555432211111234579999999999976544 46655553 333333222333 4
Q ss_pred EecCccEEEEeE
Q 002447 142 VSKDNWENLEGT 153 (921)
Q Consensus 142 ~~~~~Wt~l~g~ 153 (921)
..-.+|..|+..
T Consensus 142 L~f~GWK~L~~~ 153 (217)
T PF04620_consen 142 LNFDGWKNLTVN 153 (217)
T ss_pred ecCCceeEEEEE
Confidence 456789888864
No 92
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=52.47 E-value=34 Score=39.07 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=40.4
Q ss_pred CcccccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEec
Q 002447 869 HAQGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDLS 920 (921)
Q Consensus 869 ~~~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 920 (921)
....+||.+|.|.+..--|+|.|+|+..| +..+.++.|..+. +++++|.|.
T Consensus 323 ~~~~~Td~~G~f~~~l~pG~ytl~vs~~GY~~~~~~v~V~~~~-~~~~~~~L~ 374 (375)
T cd03863 323 NHPVTTYKDGDYWRLLVPGTYKVTASARGYDPVTKTVEVDSKG-AVQVNFTLS 374 (375)
T ss_pred cCceEECCCccEEEccCCeeEEEEEEEcCcccEEEEEEEcCCC-cEEEEEEec
Confidence 44567899999998888899999999887 4566678777654 577888775
No 93
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=51.25 E-value=90 Score=31.68 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=63.0
Q ss_pred eCCCcCCCC-CCeeee-cceeEEecccCCCceecCCCceEEEEEeecCCCc-eeeeeeccc--c----ccCceE---EEE
Q 002447 208 LNPKFEDGL-NNWSGR-GCKIVLHDSMADGKIVPLSGKVFASATERTQSWN-GIQQEITGR--V----QRKLAY---DVT 275 (921)
Q Consensus 208 ~n~~FE~G~-~gW~~~-g~~~~~~~~~~~~~~~~~~G~~sl~vt~Rt~~w~-G~~~~v~~~--l----~~g~~Y---~~S 275 (921)
..-+||++. ..|... +.++.+++ .....|++||+=+ |. |..+.|... + ..++.+ +|+
T Consensus 8 ~~~~Fe~~vp~~~~~~~~s~LslS~------~hyK~G~~SL~W~-----w~~gs~l~i~~~~~~~~~~~~~k~~g~~~~~ 76 (178)
T PF09092_consen 8 RMFDFENQVPDAFTTSQGSTLSLSD------EHYKDGKQSLKWN-----WQPGSTLTISKPLGFEPDAPTSKDGGRSAFI 76 (178)
T ss_dssp CEC-SSSTTTTCTEEECCEEEEEES------SS-SSTT-EEEEE-----EECCEEEEEES-B----HHCCCCHHTCCEEE
T ss_pred eeeccccCCCcceEecCCceEEeCH------hHhhCCccccEEE-----cCCCCEEEEecccccccccccccccCcceEE
Confidence 346799984 676665 55666554 3678999999843 33 444444422 2 112222 399
Q ss_pred EEEEEccCcccceEEEEEEEEEcCC---CcccceEEEEEEEcCCCcEEEEeEEEe-----cCC--CceEEEEEEcC--CC
Q 002447 276 AVVRIFGNNVTTATVQATLWVQTPN---QRDQYIVIANVQATDKDWAQLHGKFLL-----NGS--PARVVIYMEGP--PP 343 (921)
Q Consensus 276 awVk~~~~~~~~~~~~~~l~~~~~~---~~~~y~~i~~~~~~~~~Wt~l~g~ft~-----~~~--~~~~~ly~e~~--~~ 343 (921)
+||+-... ....+.+.+. ... +...|.- .....=.+|--+=..|.- +.. ..--.|.|..| ..
T Consensus 77 ~WIYNe~p--~~~~l~f~F~--~~~~~t~~~~~~F--~~~LNFtGWR~~WV~y~~Dm~g~~~~g~~~md~l~i~AP~~~~ 150 (178)
T PF09092_consen 77 FWIYNEKP--QDDKLRFEFG--KGLINTGKPCYWF--PFNLNFTGWRAAWVSYERDMQGRPEEGSKDMDSLRITAPANDP 150 (178)
T ss_dssp EEEEESS----SSEEEEEEE--CT--TTTEECEEE--EEE---SEEEEEEEETTTTSEE---TT-----EEEEE--TTSS
T ss_pred EEEECCCC--cCCeEEEEec--CCcccCCccceEE--EEEeecccceeeeeeehhhccCCcccCcceeeEEEEEccccCC
Confidence 99996553 2333443332 221 2222221 122223355554444432 111 11224566666 45
Q ss_pred CccEEEeeEEeccc
Q 002447 344 GADILVNSLVVKHA 357 (921)
Q Consensus 344 ~~~~yiDdv~l~~~ 357 (921)
...+|||-+.+...
T Consensus 151 ~G~lf~D~l~~~~~ 164 (178)
T PF09092_consen 151 SGTLFFDRLIFSVK 164 (178)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred CccEEEEEEeeccc
Confidence 67899999998755
No 94
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=51.05 E-value=84 Score=34.82 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhc--CCCEEEeeeccCCCCccchHHHHHHHHHHHHcCCC
Q 002447 747 KYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGIL--GLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPA 824 (921)
Q Consensus 747 ~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~--glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p~ 824 (921)
.|..+++.|.+.| +|.|-+..- |...+++.+++..... ++|+|++ |.+.....-.-...+++++..+..++.
T Consensus 141 ~~~~q~~~l~~~g--vD~i~~ET~---~~~~E~~~~~~~~~~~~~~~pv~is-~~~~~~g~l~~G~~~~~~~~~l~~~~~ 214 (304)
T PRK09485 141 FHRPRIEALAEAG--ADLLACETI---PNLDEAEALVELLKEEFPGVPAWLS-FTLRDGTHISDGTPLAEAAALLAASPQ 214 (304)
T ss_pred HHHHHHHHHhhCC--CCEEEEecc---CCHHHHHHHHHHHHHhcCCCcEEEE-EEeCCCCcCCCCCCHHHHHHHHhcCCC
Confidence 3446678887777 688877544 3446677777776644 8999998 444432111112345555555544443
Q ss_pred e
Q 002447 825 V 825 (921)
Q Consensus 825 v 825 (921)
+
T Consensus 215 ~ 215 (304)
T PRK09485 215 V 215 (304)
T ss_pred c
Confidence 3
No 95
>PF03424 CBM_17_28: Carbohydrate binding domain (family 17/28); InterPro: IPR005086 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. CBM17 from CAZY binds to amorphous cellulose and soluble beta-1,4-glucans, with a minimal binding requirement of cellotriose and optimal affinity for cellohexaose. Family 17 CBMs appear to have a very shallow binding cleft that may be more accessible to cellulose chains in non-crystalline cellulose than the deeper binding clefts of family 4 CBMs []. CBM28 from CAZY does not compete with CBM17 modules when binding to non-crystalline cellulose but does have a "beta-jelly roll" topology, which is similar in structure to the CBM17 domains. Sequence and structural conservation in families 17 and 28 suggests that they have evolved through gene duplication and subsequent divergence []. This entry includes family 17 and 28 which show structural homology. The domain is found in a number of alkaline cellulases.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 3ACI_A 3ACH_A 3ACF_A 3ACG_A 1J83_B 1J84_A 1UWW_A 1G0C_A 1G01_A.
Probab=49.62 E-value=2.8e+02 Score=28.56 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=8.7
Q ss_pred cCCCC-CCeeeecce
Q 002447 212 FEDGL-NNWSGRGCK 225 (921)
Q Consensus 212 FE~G~-~gW~~~g~~ 225 (921)
||+|+ +||.-.+.+
T Consensus 41 FeDGTrQGw~wn~dS 55 (204)
T PF03424_consen 41 FEDGTRQGWGWNGDS 55 (204)
T ss_dssp -TTSS-TTEEE-TT-
T ss_pred ccCCceecccccCCC
Confidence 99996 899765544
No 96
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=49.61 E-value=19 Score=39.98 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred ccccccccccccc-cCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEEEecCccEEEEeEE
Q 002447 79 NRKECWQGLEQDI-TDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTSVSKDNWENLEGTF 154 (921)
Q Consensus 79 ~Rt~~w~G~~q~i-~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~~~~~~Wt~l~g~f 154 (921)
-|++.|=+-.... ...|+.|.+|+|..-+|.-- ++...|...|.++.. + ..+.+++|..|+|++
T Consensus 86 vR~~t~lng~~~~~S~~LelG~dYefkv~lkaR~--pG~~hvh~m~Nv~~~-G---------piiGPg~w~~I~Gs~ 150 (399)
T TIGR03079 86 VRLSTKVNGMPVFISGPLEIGRDYEFEVTLQARI--PGRHHMHAMLNVKDA-G---------PIAGPGKWMNITGSW 150 (399)
T ss_pred EEeeEEECCEeecceeEeecCCceeEEEEEeecc--CCcccceeEEEeccC-C---------CCcCCceEEEeecch
Confidence 4777784432222 35799999999999888533 234667777776632 2 245789999999964
No 97
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=48.58 E-value=25 Score=39.52 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=47.5
Q ss_pred cchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeecc
Q 002447 626 NYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNE 696 (921)
Q Consensus 626 ~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE 696 (921)
.|...+++++.|+++||++. |+|. .-.|+.-..+....+.+.|...++.+..+++ +..|| +||
T Consensus 250 q~~F~e~~L~~ake~~I~~v---l~~P--~V~~~~~~~~~~~~~~~~w~~~i~~l~~~~~--~~~~d-mn~ 312 (345)
T PF07611_consen 250 QFFFLEKFLKLAKENGIPVV---LWWP--KVSPPYEKLYKELKVYESWWPIIKKLAKEYG--IPFLD-MNE 312 (345)
T ss_pred HHHHHHHHHHHHHHcCCcEE---EEEe--ccCHHHHHHHHhhchhhHHHHHHHHHHhcCC--ceEec-ccC
Confidence 34557999999999999885 6776 2344554444556678899999999999985 77888 666
No 98
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=48.41 E-value=1.2e+02 Score=28.57 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=13.4
Q ss_pred cCceEEEEEEEEEccCc
Q 002447 268 RKLAYDVTAVVRIFGNN 284 (921)
Q Consensus 268 ~g~~Y~~SawVk~~~~~ 284 (921)
+...++|++|||.....
T Consensus 20 ~~~~fTi~~w~~~~~~~ 36 (157)
T PF13385_consen 20 PSGSFTISFWVKPDSPS 36 (157)
T ss_dssp GGTEEEEEEEEEESS--
T ss_pred CCCCEEEEEEEEeCCCC
Confidence 37899999999998764
No 99
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=47.15 E-value=42 Score=38.36 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=38.8
Q ss_pred cccccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEe
Q 002447 870 AQGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDL 919 (921)
Q Consensus 870 ~~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~ 919 (921)
....||.+|.|.+..-.|.|.|+++..+ ...++++.+...+.+++|++.|
T Consensus 324 ~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~g~~~~~~~~l 374 (374)
T cd03858 324 HDVTTAEDGDYWRLLLPGTYNVTASAPGYEPQTKSVVVPNDNSAVVVDFTL 374 (374)
T ss_pred eeeEECCCceEEEecCCEeEEEEEEEcCcceEEEEEEEecCCceEEEeeEC
Confidence 3467999999999888999999999877 4567777776645667776654
No 100
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=47.09 E-value=43 Score=38.58 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=38.7
Q ss_pred ccccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEec
Q 002447 871 QGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDLS 920 (921)
Q Consensus 871 ~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 920 (921)
...|+.+|.|.+..-.|.|.|+|+..| +.+++.+.|..+. +++|++.|.
T Consensus 353 ~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~~~~~V~V~~~~-~~~vdf~Le 402 (402)
T cd03865 353 DITSAKDGDYWRLLAPGNYKLTASAPGYLAVVKKVAVPYSP-AVRVDFELE 402 (402)
T ss_pred ccEECCCeeEEECCCCEEEEEEEEecCcccEEEEEEEcCCC-cEEEeEEeC
Confidence 357899999997677899999999887 4567888887664 577777763
No 101
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=45.59 E-value=28 Score=27.09 Aligned_cols=23 Identities=0% Similarity=0.081 Sum_probs=20.6
Q ss_pred ceEEEEecCCCCccCCceeeEee
Q 002447 553 DVVLKLSGLDCSSMLGTFVKVKQ 575 (921)
Q Consensus 553 ~~~v~v~~~~g~p~~g~~v~v~~ 575 (921)
.++|++.|++|.|++++.+.|..
T Consensus 16 ~ltVt~kda~G~pv~n~~f~l~r 38 (47)
T PF05688_consen 16 PLTVTVKDANGNPVPNAPFTLTR 38 (47)
T ss_pred EEEEEEECCCCCCcCCceEEEEe
Confidence 68899999999999999998863
No 102
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=44.81 E-value=53 Score=37.06 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCeeEEeeEEecccccchhhhcCC-CH-HHHHHHHHHHHHHHHHHcCCeeeEEEeeccccc-cCcccccC
Q 002447 631 DDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-NK-NDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLH-GSFYQDKL 707 (921)
Q Consensus 631 D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~-~~-~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~-~~~~~~~l 707 (921)
-..++.|.+||++|.|- ++-.. ...++|+..+ .. ++.+..+.+-+-+++..|+ ++.|-|-=|... .....+.+
T Consensus 49 ~~~idaAHknGV~Vlgt-i~~e~-~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yG--fDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 49 ADWINAAHRNGVPVLGT-FIFEW-TGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYG--FDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred cHHHHHHHhcCCeEEEE-EEecC-CCchHHHHHHhccCcccchHHHHHHHHHHHHhC--CCceEeeeeccCCcHHHHHHH
Confidence 35889999999999994 44221 1234666542 22 5566778888889999997 778887777643 11111111
Q ss_pred ChhHHHHHHHHHHhcCCCceEEE
Q 002447 708 GKDIRAYMFKTAHQLDLSATLFV 730 (921)
Q Consensus 708 g~~~~~~af~~ar~~dP~a~L~~ 730 (921)
.++++...+.+++..|+.+|+-
T Consensus 125 -~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 125 -IAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred -HHHHHHHHHHHhhcCCCcEEEE
Confidence 1467777788888889998763
No 103
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=44.49 E-value=49 Score=37.67 Aligned_cols=49 Identities=22% Similarity=0.119 Sum_probs=38.4
Q ss_pred ccccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEec
Q 002447 871 QGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDLS 920 (921)
Q Consensus 871 ~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 920 (921)
...||.+|.|.+..-.|.|.|+++..| ...++++.|..+. ++++++.|.
T Consensus 313 ~~~T~~~G~y~~~L~pG~y~v~vs~~Gy~~~~~~V~v~~~~-~~~~~f~L~ 362 (363)
T cd06245 313 RVYTKEGGYFHVLLAPGQHNINVIAEGYQQEHLPVVVSHDE-ASSVKIVLD 362 (363)
T ss_pred ceEeCCCcEEEEecCCceEEEEEEEeCceeEEEEEEEcCCC-eEEEEEEec
Confidence 457899999998888899999999887 4677788887654 466677664
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=44.09 E-value=2.4e+02 Score=34.35 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCeeeEEEeecccccc-----------Cc------c--cccCChhHHHHHHHHHHhcCCCceEEEe
Q 002447 671 TAVQNRLTGLLARYKGKFRHYDVNNEMLHG-----------SF------Y--QDKLGKDIRAYMFKTAHQLDLSATLFVN 731 (921)
Q Consensus 671 ~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~-----------~~------~--~~~lg~~~~~~af~~ar~~dP~a~L~~N 731 (921)
+.++.|++..+.+--+.++-.|-+|+..+- .. | ......+|+.+..+.+.++..+ .|.|-
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad-~I~Ik 174 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD-SIAIK 174 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEeC
Confidence 346678888787777889999999987431 00 0 0122346777777777776554 56666
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHC-CCceeeEEeeccCCCC
Q 002447 732 DYHVEDGCDPRSSPEKYIEHILNLQEQ-GAPVGGIGIQGHIDSP 774 (921)
Q Consensus 732 dy~~~~~~~~~~~~~~~~~~i~~l~~~-g~piDgIG~Q~H~~~p 774 (921)
|-.= ..++....++++.|+++ ++| |++|+|-...
T Consensus 175 DtaG------~l~P~~v~~lv~alk~~~~ip---i~~H~Hnt~G 209 (596)
T PRK14042 175 DMAG------LLTPTVTVELYAGLKQATGLP---VHLHSHSTSG 209 (596)
T ss_pred Cccc------CCCHHHHHHHHHHHHhhcCCE---EEEEeCCCCC
Confidence 5321 12467777888888764 333 6777775543
No 105
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=43.85 E-value=54 Score=27.43 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=28.0
Q ss_pred ecceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEec
Q 002447 884 GFHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDLS 920 (921)
Q Consensus 884 ~f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 920 (921)
.-.|.|.|+++.++ ...++++.+.++. +..|.++|.
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~-~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGE-TTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCC-EEEEEEEEE
Confidence 55799999999888 4678899998544 577777764
No 106
>PRK09936 hypothetical protein; Provisional
Probab=42.82 E-value=3.7e+02 Score=29.51 Aligned_cols=158 Identities=13% Similarity=0.246 Sum_probs=94.7
Q ss_pred CCChHHHHHH----HhccceeecccccccccccccCCcccchhhH----HHHHHHHhcCCeeEEeeEEecccccchhhhc
Q 002447 591 IDNEDFVKFF----TKYFNWAVFGNELKWYWTESQQGNFNYKDAD----DMLDLCLNHNIQTRGHCIFWEVQATVQPWIQ 662 (921)
Q Consensus 591 ~~~~~y~~~~----~~~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D----~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~ 662 (921)
+.....++++ ...|+.++ +-|..+ |.-+|...| +.++.|.+.||+|+-. | ..-|+|..
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLi----vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG-L-----~~Dp~y~q 100 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLV----VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG-L-----YADPEFFM 100 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEE----EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc-c-----cCChHHHH
Confidence 3344555544 45899988 678665 222665544 5778999999999743 2 23577776
Q ss_pred CC--CHHHHHHHHHHHHHHHH-------HHcCCeeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCC--CceEEEe
Q 002447 663 SL--NKNDLMTAVQNRLTGLL-------ARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDL--SATLFVN 731 (921)
Q Consensus 663 ~~--~~~~l~~~~~~~i~~v~-------~rY~g~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP--~a~L~~N 731 (921)
.. +++.+...++.+..+-. ++.+-.|..|=+==|+..-+ |.+.--.+.+....+.+.+.-| +..|.|.
T Consensus 101 ~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~-W~~~~rR~~L~~~L~~~~~~l~~~~kPv~IS 179 (296)
T PRK09936 101 HQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLN-WRDEARRQPLLTWLNAAQRLIDVSAKPVHIS 179 (296)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhc-ccCHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 53 44555555554444333 33334467787777764333 4332223445555555555544 5567887
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHCCCce---eeEEee
Q 002447 732 DYHVEDGCDPRSSPEKYIEHILNLQEQGAPV---GGIGIQ 768 (921)
Q Consensus 732 dy~~~~~~~~~~~~~~~~~~i~~l~~~g~pi---DgIG~Q 768 (921)
-|.-- ...+..+-.+++.|...|+.+ ||+|..
T Consensus 180 ay~~g-----~~sP~~l~~Wl~~l~~~~l~V~~QDGvGv~ 214 (296)
T PRK09936 180 AFFAG-----NMSPDGYRQWLEQLKATGVNVWVQDGSGVD 214 (296)
T ss_pred eeccc-----CCChHHHHHHHHHHhhcCCeEEEEcCCCcc
Confidence 77521 124567778889999998865 899873
No 107
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=42.24 E-value=3.2e+02 Score=26.22 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=52.0
Q ss_pred eeeeeeccccccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEEcCCCcEEEEeEEEecCCCceEEE
Q 002447 257 GIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQATDKDWAQLHGKFLLNGSPARVVI 336 (921)
Q Consensus 257 G~~~~v~~~l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~~~~~Wt~l~g~ft~~~~~~~~~l 336 (921)
-|.+.+ |++|.+|.+.+.+..... .+.-+++. +-|. ....|........ +..|++|.++-.-.|
T Consensus 44 ~P~LPl---Lk~G~~Y~l~~~~~~~P~--~svylki~----F~dr--~~e~i~~~i~k~~-----~~~F~yP~~aysY~I 107 (128)
T PF15432_consen 44 VPSLPL---LKRGHTYQLKFNIDVVPE--NSVYLKII----FFDR--QGEEIEEQIIKND-----SFEFTYPEEAYSYTI 107 (128)
T ss_pred CCCCCE---ecCCCEEEEEEEEEEccC--CeEEEEEE----EEcc--CCCEeeEEEEecC-----ceEEeCCCCceEEEE
Confidence 455555 999999999999988753 23333333 3332 2234544444433 367999988765555
Q ss_pred EEEcCCCCccEEEeeEEeccc
Q 002447 337 YMEGPPPGADILVNSLVVKHA 357 (921)
Q Consensus 337 y~e~~~~~~~~yiDdv~l~~~ 357 (921)
-+=.. ...+|-+.++.|.+.
T Consensus 108 ~Lina-G~~~l~F~~i~I~e~ 127 (128)
T PF15432_consen 108 SLINA-GCQSLTFHSIEISEV 127 (128)
T ss_pred EEeeC-CCCeeEEeEEEEEEc
Confidence 55442 345788888888653
No 108
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=41.74 E-value=5.3e+02 Score=28.66 Aligned_cols=230 Identities=10% Similarity=0.153 Sum_probs=97.4
Q ss_pred HHHHh-ccceeecccccccccccccCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchh-hhcCCCH-HHHHHHHH
Q 002447 598 KFFTK-YFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQP-WIQSLNK-NDLMTAVQ 674 (921)
Q Consensus 598 ~~~~~-~Fn~~t~eN~~kW~~~ep~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~-W~~~~~~-~~l~~~~~ 674 (921)
.+|++ +-|.|+. +.+.|... .|..++.+.+.||-|.-- + ..|. =+...+| ..--..+.
T Consensus 60 ~~l~~LgiNtIRV------Y~vdp~~n------Hd~CM~~~~~aGIYvi~D--l-----~~p~~sI~r~~P~~sw~~~l~ 120 (314)
T PF03198_consen 60 PLLKELGINTIRV------YSVDPSKN------HDECMSAFADAGIYVILD--L-----NTPNGSINRSDPAPSWNTDLL 120 (314)
T ss_dssp HHHHHHT-SEEEE------S---TTS--------HHHHHHHHHTT-EEEEE--S------BTTBS--TTS------HHHH
T ss_pred HHHHHcCCCEEEE------EEeCCCCC------HHHHHHHHHhCCCEEEEe--c-----CCCCccccCCCCcCCCCHHHH
Confidence 34544 7888886 77888764 599999999999966532 1 1221 1111122 12223455
Q ss_pred HHHHHHHHHcCC--eeeEEEeeccccccCcccccCChhHHHHHHHHHH----hcCCCceEEEecCCCcCCCCCCCCHHHH
Q 002447 675 NRLTGLLARYKG--KFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAH----QLDLSATLFVNDYHVEDGCDPRSSPEKY 748 (921)
Q Consensus 675 ~~i~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar----~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 748 (921)
++...++..++. .+-.+=+-||.++..- ...-.-|++.+.|=+| +... -++-++ |......+ .+
T Consensus 121 ~~~~~vid~fa~Y~N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG-YsaaD~~~---~r--- 190 (314)
T PF03198_consen 121 DRYFAVIDAFAKYDNTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG-YSAADDAE---IR--- 190 (314)
T ss_dssp HHHHHHHHHHTT-TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS-----EE-EEE---TT---TH---
T ss_pred HHHHHHHHHhccCCceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCC-CCCcee-EEccCChh---HH---
Confidence 566666655542 4888889999886531 1112345555555443 3332 112222 33221110 11
Q ss_pred HHHHHHHH--HCCCceeeEEeeccC--CCCC--HHHHHHHHHHHhhcCCCEEEeeeccCCCCccchHHHHHHHHHHHHcC
Q 002447 749 IEHILNLQ--EQGAPVGGIGIQGHI--DSPV--GPIVCSALDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAH 822 (921)
Q Consensus 749 ~~~i~~l~--~~g~piDgIG~Q~H~--~~p~--~~~i~~~l~~~a~~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~ 822 (921)
..+.+.|. .....+|=.|+..+- +... .+.....++.|+.+.+||.++|++-....+. .=.....++..-++.
T Consensus 191 ~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGCn~~~pR-~f~ev~aly~~~Mt~ 269 (314)
T PF03198_consen 191 QDLANYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGCNTVTPR-TFTEVPALYSPEMTD 269 (314)
T ss_dssp HHHHHHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS----THHHHHTSHHHHT
T ss_pred HHHHHHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCCCCCCCc-cchHhHHhhCccchh
Confidence 12223221 122358888887663 1111 2347888899999999999999998765311 001111222222232
Q ss_pred CCeEEEEEEccCCCCCCCCCccccCCCCC----cchHHHHHHH
Q 002447 823 PAVEGIMLWGFWELFMSRDSAHLVNAEGD----INEAGKKFLN 861 (921)
Q Consensus 823 p~v~gi~~Wg~~d~~~~~~~~gL~d~d~~----pKpa~~~~~~ 861 (921)
-..|=+.+.+... ..+.||+.-+.. +.+-|..|++
T Consensus 270 -v~SGGivYEy~~e---~n~yGlV~~~~~~~~~~~~Df~~L~~ 308 (314)
T PF03198_consen 270 -VWSGGIVYEYFQE---ANNYGLVEISGDGSVTTLDDFDNLKS 308 (314)
T ss_dssp -TEEEEEES-SB-----SSS--SEEE-TTS-EEE-THHHHHHH
T ss_pred -heeceEEEEEecc---CCceEEEEEcCCCCeeecHhHHHHHH
Confidence 2334445554433 257888766553 4455555543
No 109
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=41.37 E-value=94 Score=33.84 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhcCCCEEEeeeccCC
Q 002447 750 EHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGILGLPIWFTELDVSS 802 (921)
Q Consensus 750 ~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~glpi~iTE~dv~~ 802 (921)
..|+.|.++| +|-+|+..= |...+.+..++...++++|.||+ +.+..
T Consensus 138 ~rie~l~~ag--~Dlla~ETi---p~i~Ea~Aiv~l~~~~s~p~wIS-fT~~d 184 (300)
T COG2040 138 PRIEALNEAG--ADLLACETL---PNITEAEAIVQLVQEFSKPAWIS-FTLND 184 (300)
T ss_pred HHHHHHHhCC--CcEEeeccc---CChHHHHHHHHHHHHhCCceEEE-EEeCC
Confidence 4677888888 788887443 55566666776677779999999 55654
No 110
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=39.88 E-value=6.2e+02 Score=30.98 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC-CCceeeEEeeccCCCC
Q 002447 709 KDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ-GAPVGGIGIQGHIDSP 774 (921)
Q Consensus 709 ~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~-g~piDgIG~Q~H~~~p 774 (921)
.+|+.+..+.+.++..+ .|.+-|-.= ...+....++++.|+++ ++| ||+|+|-+..
T Consensus 154 ~~~~~~~a~~l~~~Gad-~i~i~Dt~G------~l~P~~~~~lv~~lk~~~~~p---i~~H~Hnt~G 210 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVD-SLCIKDMAG------LLKPYAAYELVSRIKKRVDVP---LHLHCHATTG 210 (593)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCCCC------CcCHHHHHHHHHHHHHhcCCe---EEEEECCCCc
Confidence 47777778777776543 566666321 12467777888888764 344 6788886544
No 111
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=39.79 E-value=5.3e+02 Score=28.03 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=92.3
Q ss_pred hhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcC--CeeeEEEeeccccccCccc-c
Q 002447 629 DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYK--GKFRHYDVNNEMLHGSFYQ-D 705 (921)
Q Consensus 629 ~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~--g~v~~WDVvNE~~~~~~~~-~ 705 (921)
....+...+.+.|+++--. +|..+ + +...+++-|..-..-|. +.|...-|=||.+.+.+-- .
T Consensus 88 ~le~v~pAa~~~g~kv~lG--iw~td----d---------~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tas 152 (305)
T COG5309 88 TLENVLPAAEASGFKVFLG--IWPTD----D---------IHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTAS 152 (305)
T ss_pred hhhhhHHHHHhcCceEEEE--Eeecc----c---------hhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHH
Confidence 3456888899999887422 66532 1 12222322332233333 3588889999998765211 1
Q ss_pred cCChhHHHHHHHHHHhcCCCceEEEec-CCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccC--C-CCC----HH
Q 002447 706 KLGKDIRAYMFKTAHQLDLSATLFVND-YHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--D-SPV----GP 777 (921)
Q Consensus 706 ~lg~~~~~~af~~ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~--~-~p~----~~ 777 (921)
.|+ +||...--.++++.-+.++.--| ++....+ . ++|+ + .|=|+.+.|. + .+. ..
T Consensus 153 ql~-~~I~~vrsav~~agy~gpV~T~dsw~~~~~n------p---~l~~----~---SDfia~N~~aYwd~~~~a~~~~~ 215 (305)
T COG5309 153 QLI-EYIDDVRSAVKEAGYDGPVTTVDSWNVVINN------P---ELCQ----A---SDFIAANAHAYWDGQTVANAAGT 215 (305)
T ss_pred HHH-HHHHHHHHHHHhcCCCCceeecccceeeeCC------h---HHhh----h---hhhhhcccchhccccchhhhhhH
Confidence 111 56666666666666555443322 2221111 1 1222 1 2556666664 2 121 12
Q ss_pred HHHHHHHHHh-hc--CCCEEEeeeccCCCC---------ccchHHHHHHHHHHHHcCCCeEEEEEEccCC
Q 002447 778 IVCSALDNLG-IL--GLPIWFTELDVSSIN---------EYVRGEDLEVMLREAFAHPAVEGIMLWGFWE 835 (921)
Q Consensus 778 ~i~~~l~~~a-~~--glpi~iTE~dv~~~~---------e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~d 835 (921)
-+...|+++- .. .+++||||.++++.. ...|..++++++-...+. ++.-+.+=-|.|
T Consensus 216 f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~-G~d~fvfeAFdd 284 (305)
T COG5309 216 FLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC-GYDVFVFEAFDD 284 (305)
T ss_pred HHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc-CccEEEeeeccc
Confidence 2445577653 22 389999999999753 345777877777655553 444444434433
No 112
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=37.49 E-value=1.2e+02 Score=32.38 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHhcCCeeEEeeEEecccccchhhh------cCCCHHHHHHHHHHHHHH---HHHHcCCeeeEEEeecccc
Q 002447 628 KDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLTG---LLARYKGKFRHYDVNNEML 698 (921)
Q Consensus 628 ~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~------~~~~~~~l~~~~~~~i~~---v~~rY~g~v~~WDVvNE~~ 698 (921)
....+.|+.|++||+.+=.|+= .|+-. -.++++++++.+..-|.. ++...+.++.+.- |
T Consensus 42 ~~M~~tv~lA~~~gV~iGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVK----P- 109 (242)
T PF03746_consen 42 ETMRRTVRLAKEHGVAIGAHPS-------YPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAEGVPLHHVK----P- 109 (242)
T ss_dssp HHHHHHHHHHHHTT-EEEEE----------S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT--EEEE-------
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----c-
Confidence 3457899999999999999963 34322 125788888877766654 6778888887765 2
Q ss_pred ccCcccccC-ChhHHHHHHHHHHhcCCCceEEEe
Q 002447 699 HGSFYQDKL-GKDIRAYMFKTAHQLDLSATLFVN 731 (921)
Q Consensus 699 ~~~~~~~~l-g~~~~~~af~~ar~~dP~a~L~~N 731 (921)
|+..|.... -+++.+...+++++.+|+..|+.-
T Consensus 110 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ 143 (242)
T PF03746_consen 110 HGALYNMAAKDEELARAIAEAIKAFDPDLPLYGL 143 (242)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEE
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 544333222 235667778899999999888764
No 113
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=37.30 E-value=1.2e+02 Score=28.73 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=12.8
Q ss_pred CceEEEEEEEEEcCCCC
Q 002447 98 GFTYLVSASVGVSGPHQ 114 (921)
Q Consensus 98 g~tY~~S~~Vk~~~~~~ 114 (921)
...|+|++|||......
T Consensus 21 ~~~fTi~~w~~~~~~~~ 37 (157)
T PF13385_consen 21 SGSFTISFWVKPDSPSS 37 (157)
T ss_dssp GTEEEEEEEEEESS--S
T ss_pred CCCEEEEEEEEeCCCCC
Confidence 66999999999966554
No 114
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.53 E-value=4.9e+02 Score=30.58 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCeeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHH
Q 002447 672 AVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEH 751 (921)
Q Consensus 672 ~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~ 751 (921)
.++.+|+..+..--+.|+..+-.|+.. -++.+.++||+..-.+.+.+. |... +....+.|+++
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~------------n~~~~v~~ak~~G~~v~~~i~-~t~~----p~~~~~~~~~~ 159 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR------------NLETAVKATKKAGGHAQVAIS-YTTS----PVHTIDYFVKL 159 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH------------HHHHHHHHHHHcCCeEEEEEE-eecC----CCCCHHHHHHH
Confidence 355667777766666788888888862 255567777776654443332 1111 12334556677
Q ss_pred HHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHh-hcCCCEEE
Q 002447 752 ILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLG-ILGLPIWF 795 (921)
Q Consensus 752 i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a-~~glpi~i 795 (921)
+++|.+.|+ |.|.+-=-.+.-.+.++.+.+..+. .+++||.+
T Consensus 160 a~~l~~~Ga--d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 160 AKEMQEMGA--DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred HHHHHHcCC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 777777774 4444422222222344555555443 23455443
No 115
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.48 E-value=5e+02 Score=29.88 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCeeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHH
Q 002447 672 AVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEH 751 (921)
Q Consensus 672 ~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~ 751 (921)
.++.||+..+.+=-+-++-+|-+|-+- -++.+.+.+|+..-.++..+. |.+- +....+.|+++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~R------------Nl~~ai~a~kk~G~h~q~~i~-YT~s----PvHt~e~yv~~ 161 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVR------------NLKTAIKAAKKHGAHVQGTIS-YTTS----PVHTLEYYVEL 161 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchh------------HHHHHHHHHHhcCceeEEEEE-eccC----CcccHHHHHHH
Confidence 466777777766556788888888762 377888999998777776664 3321 22345778899
Q ss_pred HHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHh-hcCCCEEEe
Q 002447 752 ILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLG-ILGLPIWFT 796 (921)
Q Consensus 752 i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a-~~glpi~iT 796 (921)
+++|.+.|+ |-|-+----+.-.+....+.+..+. .+++||.+-
T Consensus 162 akel~~~g~--DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lH 205 (472)
T COG5016 162 AKELLEMGV--DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELH 205 (472)
T ss_pred HHHHHHcCC--CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEe
Confidence 999999885 5554421111111222333333332 356666653
No 116
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=35.20 E-value=4.7e+02 Score=30.91 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCeeeEEEeeccc
Q 002447 672 AVQNRLTGLLARYKGKFRHYDVNNEM 697 (921)
Q Consensus 672 ~~~~~i~~v~~rY~g~v~~WDVvNE~ 697 (921)
.++.||+..+..--+.|+..|-+||.
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~ 121 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI 121 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH
Confidence 45567777666666678888888874
No 117
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=35.12 E-value=3.1e+02 Score=26.62 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.8
Q ss_pred eEEEecCCC-ceEEEEEEcCCCCcceEEeeEEEecC
Q 002447 152 GTFSLSAVP-DRIVFYLEGPAPGVDLLIRSVVITCS 186 (921)
Q Consensus 152 g~ft~~~~~-~~~~ly~e~~~~~~d~yvDdv~l~~~ 186 (921)
..|+++... ..+.|+++......++|||.+.+-+.
T Consensus 107 ~~~~~~~~~~~~~~i~i~~~~~~~~v~IDkIEFIPv 142 (143)
T PF03944_consen 107 TPFTFSSNQSITITISIQNISSNGNVYIDKIEFIPV 142 (143)
T ss_dssp SEEEESTSEEEEEEEEEESSTTTS-EEEEEEEEEEC
T ss_pred ceEEecCCCceEEEEEEEecCCCCeEEEEeEEEEeC
Confidence 457776665 56778887776679999999998764
No 118
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=34.68 E-value=75 Score=36.38 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=35.3
Q ss_pred cccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCC-CCcEEEEEEe
Q 002447 872 GHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKG-ESPLVVTIDL 919 (921)
Q Consensus 872 ~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~-~~~~~~~~~~ 919 (921)
..||.+|.|.+.--.|.|.|+|+.+| ...++++.|..+ .....|++|.
T Consensus 325 ~~T~~~G~y~~~l~pG~Y~v~vsa~Gy~~~~~~v~v~~~~~~~~~~~~~~ 374 (376)
T cd03866 325 YRTNVNGEYFLLLLPGKYMINVTAPGFKTVITNVIIPYNPDNFSALKHDF 374 (376)
T ss_pred EEECCCceEEEecCCeeEEEEEEeCCcceEEEEEEeCCCCCccceeEeee
Confidence 47999999987777899999999887 467778888643 2233555554
No 119
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=33.96 E-value=4.3e+02 Score=25.33 Aligned_cols=79 Identities=19% Similarity=0.104 Sum_probs=45.5
Q ss_pred CccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEEEecCccEEEEeEEEecCCCceEEEEEEcCCCC
Q 002447 94 KVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTSVSKDNWENLEGTFSLSAVPDRIVFYLEGPAPG 173 (921)
Q Consensus 94 ~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~~~~~~Wt~l~g~ft~~~~~~~~~ly~e~~~~~ 173 (921)
-|++|.+|.+.+.+...-.. +. .|++.+=+. ....|....... -+.+|+.|..+-.-.|-+=. .+-
T Consensus 49 lLk~G~~Y~l~~~~~~~P~~--sv----ylki~F~dr--~~e~i~~~i~k~-----~~~~F~yP~~aysY~I~Lin-aG~ 114 (128)
T PF15432_consen 49 LLKRGHTYQLKFNIDVVPEN--SV----YLKIIFFDR--QGEEIEEQIIKN-----DSFEFTYPEEAYSYTISLIN-AGC 114 (128)
T ss_pred EecCCCEEEEEEEEEEccCC--eE----EEEEEEEcc--CCCEeeEEEEec-----CceEEeCCCCceEEEEEEee-CCC
Confidence 49999999999999875333 22 334333211 112344444333 34678988876544433322 234
Q ss_pred cceEEeeEEEecC
Q 002447 174 VDLLIRSVVITCS 186 (921)
Q Consensus 174 ~d~yvDdv~l~~~ 186 (921)
..|-+.+++|.+.
T Consensus 115 ~~l~F~~i~I~e~ 127 (128)
T PF15432_consen 115 QSLTFHSIEISEV 127 (128)
T ss_pred CeeEEeEEEEEEc
Confidence 5677788877653
No 120
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=33.56 E-value=3.7e+02 Score=35.67 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCeeeEEEeeccccc-----------c-------Ccccc-------cCChhHHHHHHHHHHhcCCC
Q 002447 671 TAVQNRLTGLLARYKGKFRHYDVNNEMLH-----------G-------SFYQD-------KLGKDIRAYMFKTAHQLDLS 725 (921)
Q Consensus 671 ~~~~~~i~~v~~rY~g~v~~WDVvNE~~~-----------~-------~~~~~-------~lg~~~~~~af~~ar~~dP~ 725 (921)
+.++.|++..+.+-=+.++-+|-+|..-+ + ++=.+ ....+|+.+..+.+.++..+
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad 704 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAH 704 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 35677888888887788889999997632 0 00000 11135555555555555433
Q ss_pred ceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC-CCceeeEEeeccCCC
Q 002447 726 ATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ-GAPVGGIGIQGHIDS 773 (921)
Q Consensus 726 a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~-g~piDgIG~Q~H~~~ 773 (921)
.|.+-|-.= ..++....++++.|+++ ++| |++|+|-..
T Consensus 705 -~I~ikDt~G------ll~P~~~~~Lv~~lk~~~~~p---i~~H~Hdt~ 743 (1143)
T TIGR01235 705 -ILGIKDMAG------LLKPAAAKLLIKALREKTDLP---IHFHTHDTS 743 (1143)
T ss_pred -EEEECCCcC------CcCHHHHHHHHHHHHHhcCCe---EEEEECCCC
Confidence 455555220 12355666666666654 333 455566443
No 121
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=32.71 E-value=5e+02 Score=31.75 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCeeeEEEeeccccc-----------cCc--------ccccCChhHHHHHHHHHHhcCCCceEEEecC
Q 002447 673 VQNRLTGLLARYKGKFRHYDVNNEMLH-----------GSF--------YQDKLGKDIRAYMFKTAHQLDLSATLFVNDY 733 (921)
Q Consensus 673 ~~~~i~~v~~rY~g~v~~WDVvNE~~~-----------~~~--------~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy 733 (921)
++.+++..+..--+.|+..|-+|+.-+ +-. +......+|+.+..+.+.++..+ .|.+-|-
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad-~I~i~Dt 176 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCD-SICIKDM 176 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCc
Confidence 445566555555566777777776521 000 00011235655555555555433 4555553
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHHC-CCceeeEEeeccCCCC
Q 002447 734 HVEDGCDPRSSPEKYIEHILNLQEQ-GAPVGGIGIQGHIDSP 774 (921)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~i~~l~~~-g~piDgIG~Q~H~~~p 774 (921)
.= ...+....++++.|+++ ++| ||+|+|-...
T Consensus 177 ~G------~~~P~~~~~lv~~lk~~~~~p---i~~H~Hnt~G 209 (592)
T PRK09282 177 AG------LLTPYAAYELVKALKEEVDLP---VQLHSHCTSG 209 (592)
T ss_pred CC------CcCHHHHHHHHHHHHHhCCCe---EEEEEcCCCC
Confidence 21 12356666777777654 333 6777775443
No 122
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=32.58 E-value=5.4e+02 Score=31.37 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC-CCceeeEEeeccCCC
Q 002447 710 DIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ-GAPVGGIGIQGHIDS 773 (921)
Q Consensus 710 ~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~-g~piDgIG~Q~H~~~ 773 (921)
+|+.+..+.+.++..+ .|.+-|-.= ...+....++++.|+++ ++| |++|+|-..
T Consensus 149 ~~~~~~~~~~~~~Gad-~I~i~Dt~G------~~~P~~v~~lv~~lk~~~~~p---i~~H~Hnt~ 203 (582)
T TIGR01108 149 ETYLDLAEELLEMGVD-SICIKDMAG------ILTPKAAYELVSALKKRFGLP---VHLHSHATT 203 (582)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCCCC------CcCHHHHHHHHHHHHHhCCCc---eEEEecCCC
Confidence 5555555555554432 344544220 11345566666666553 333 566666543
No 123
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=32.02 E-value=4.3e+02 Score=24.68 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=39.9
Q ss_pred cccCceEEEEEEEEEccCcccceEEEEEEEEEcCCCcccceEEEEEEEc-C---CCcEEEEeEEEecCCCceEEEEEEcC
Q 002447 266 VQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQYIVIANVQAT-D---KDWAQLHGKFLLNGSPARVVIYMEGP 341 (921)
Q Consensus 266 l~~g~~Y~~SawVk~~~~~~~~~~~~~~l~~~~~~~~~~y~~i~~~~~~-~---~~Wt~l~g~ft~~~~~~~~~ly~e~~ 341 (921)
+.....|.|++.+....+ .. .+.|++...++ ..++...+. . +.|+.++....++.....+.|.+.++
T Consensus 49 ~~~~g~~~i~~~~as~~~---~~--~i~v~~d~~~G----~~~~~~~~p~tg~~~~~~~~~~~v~~~~G~~~l~~~~~~~ 119 (129)
T smart00606 49 FGSSGAYTFTARVASGNA---GG--SIELRLDSPTG----TLVGTVDVPSTGGWQTYQTVSATVTLPAGVHDVYLVFKGG 119 (129)
T ss_pred cCCCCceEEEEEEeCCCC---Cc--eEEEEECCCCC----cEEEEEEeCCCCCCccCEEEEEEEccCCceEEEEEEEECC
Confidence 444478999887744332 12 34555422222 123444433 2 24666665555544445565555553
Q ss_pred CCCccEEEeeEEe
Q 002447 342 PPGADILVNSLVV 354 (921)
Q Consensus 342 ~~~~~~yiDdv~l 354 (921)
.. +-||.+.+
T Consensus 120 ~~---~~ld~~~F 129 (129)
T smart00606 120 NY---FNIDWFRF 129 (129)
T ss_pred Cc---EEEEEEEC
Confidence 22 88887754
No 124
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=31.89 E-value=92 Score=32.87 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=20.9
Q ss_pred cccccCCCccE-EEeecceeEEEEEecCCc
Q 002447 870 AQGHVDEQGEF-AFRGFHGTYTIVIPTLHK 898 (921)
Q Consensus 870 ~~~~t~~~G~~-~~r~f~G~y~v~v~~~~~ 898 (921)
.......||.| ....|.|+|+|......+
T Consensus 59 ~~~~v~qDGtf~n~~lF~G~Yki~~~~G~f 88 (222)
T PF12866_consen 59 QDVYVKQDGTFRNTKLFDGDYKIVPKNGNF 88 (222)
T ss_dssp EEEEB-TTSEEEEEEE-SEEEEEEE-CTSC
T ss_pred cceEEccCCceeeeeEeccceEEEEcCCCC
Confidence 34567889999 999999999999954433
No 125
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=31.70 E-value=2.1e+02 Score=32.89 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCceeeEEeeccC-CCCCHHHHHHHHHHHhhcCCCEEEeeeccCCCCccchHHHHHHHHHHHHcCC
Q 002447 745 PEKYIEHILNLQEQGAPVGGIGIQGHI-DSPVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHP 823 (921)
Q Consensus 745 ~~~~~~~i~~l~~~g~piDgIG~Q~H~-~~p~~~~i~~~l~~~a~~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p 823 (921)
...+.+-|+..++.| |||..+.... +.-....+..+++.-.+.|..|.++ +|+..... ...+.+..+|+....||
T Consensus 16 ~~dw~~di~~A~~~G--IDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~S-fD~~~~~~-~~~~~~~~~i~~y~~~p 91 (386)
T PF03659_consen 16 QEDWEADIRLAQAAG--IDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFS-FDMNSLGP-WSQDELIALIKKYAGHP 91 (386)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEE-ecccCCCC-CCHHHHHHHHHHHcCCh
Confidence 355666666666666 7888887662 2222345666666666778888887 77765422 23366777777766666
Q ss_pred C
Q 002447 824 A 824 (921)
Q Consensus 824 ~ 824 (921)
+
T Consensus 92 a 92 (386)
T PF03659_consen 92 A 92 (386)
T ss_pred h
Confidence 4
No 126
>PRK12569 hypothetical protein; Provisional
Probab=31.65 E-value=2.2e+02 Score=30.46 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=62.9
Q ss_pred hhHHHHHHHHhcCCeeEEeeEEecccccchhhh------cCCCHHHHHHHHHHHHH---HHHHHcCCeeeEEEeeccccc
Q 002447 629 DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWI------QSLNKNDLMTAVQNRLT---GLLARYKGKFRHYDVNNEMLH 699 (921)
Q Consensus 629 ~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~------~~~~~~~l~~~~~~~i~---~v~~rY~g~v~~WDVvNE~~~ 699 (921)
..++.|++|++||+.+=.|+= .|+-. -.++++++++.+..-|. .++...+.++.+.- | |
T Consensus 48 ~M~~tv~lA~~~~V~IGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~g~~l~hVK----P-H 115 (245)
T PRK12569 48 IMRRTVELAKAHGVGIGAHPG-------FRDLVGFGRRHINASPQELVNDVLYQLGALREFARAHGVRLQHVK----P-H 115 (245)
T ss_pred HHHHHHHHHHHcCCEeccCCC-------CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----C-C
Confidence 467899999999999999963 34322 12578999888777765 45677777777754 2 4
Q ss_pred cCcccccC-ChhHHHHHHHHHHhcCCCceEEEe
Q 002447 700 GSFYQDKL-GKDIRAYMFKTAHQLDLSATLFVN 731 (921)
Q Consensus 700 ~~~~~~~l-g~~~~~~af~~ar~~dP~a~L~~N 731 (921)
+..|.... -+++.+...+.+++.+|+..|+.-
T Consensus 116 GALYN~~~~d~~la~av~~ai~~~~~~l~l~~~ 148 (245)
T PRK12569 116 GALYMHAARDEALARLLVEALARLDPLLILYCM 148 (245)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 44333322 235666777888999999777653
No 127
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=31.03 E-value=1.1e+02 Score=35.23 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=36.0
Q ss_pred cccccCCCccEEEee-cceeEEEEEecCC-ceEEEEEEEeCCCCcEEEEEEe
Q 002447 870 AQGHVDEQGEFAFRG-FHGTYTIVIPTLH-KKIVKTFVVDKGESPLVVTIDL 919 (921)
Q Consensus 870 ~~~~t~~~G~~~~r~-f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~~~~ 919 (921)
....||.+|.| +|. -.|.|.|+++..+ ..++++++|..+. ++++++.|
T Consensus 342 ~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~~v~V~~~~-~~~~df~L 391 (392)
T cd03864 342 HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTVTVTVGPAE-ATLVNFQL 391 (392)
T ss_pred cceEECCCCcE-EecCCCeeEEEEEEEcCceeEEEEEEEcCCC-cEEEeeEe
Confidence 34678999999 665 4799999999887 4677788887653 45566665
No 128
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.92 E-value=5.9e+02 Score=30.40 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCeeeEEEeeccccc-----------cCc------c--cccCChhHHHHHHHHHHhcCCCceEEEec
Q 002447 672 AVQNRLTGLLARYKGKFRHYDVNNEMLH-----------GSF------Y--QDKLGKDIRAYMFKTAHQLDLSATLFVND 732 (921)
Q Consensus 672 ~~~~~i~~v~~rY~g~v~~WDVvNE~~~-----------~~~------~--~~~lg~~~~~~af~~ar~~dP~a~L~~Nd 732 (921)
.++.+|+..+..--+.|+-.|-+|+..+ +.. | ......+|+.+..+.+.++.. -.|.+-|
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Ga-d~I~IkD 176 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGA-DSICIKD 176 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCC-CEEEeCC
Confidence 4667788877777778888998888632 000 0 011123555555555555432 2444544
Q ss_pred CCCcCCCCCCCCHHHHHHHHHHHHHC---CCceeeEEeeccCCC
Q 002447 733 YHVEDGCDPRSSPEKYIEHILNLQEQ---GAPVGGIGIQGHIDS 773 (921)
Q Consensus 733 y~~~~~~~~~~~~~~~~~~i~~l~~~---g~piDgIG~Q~H~~~ 773 (921)
-.= ...+....++++.|+++ ++| |++|+|-..
T Consensus 177 taG------ll~P~~~~~LV~~Lk~~~~~~ip---I~~H~Hnt~ 211 (499)
T PRK12330 177 MAA------LLKPQPAYDIVKGIKEACGEDTR---INLHCHSTT 211 (499)
T ss_pred Ccc------CCCHHHHHHHHHHHHHhCCCCCe---EEEEeCCCC
Confidence 210 11356666777777664 233 556666543
No 129
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=30.50 E-value=5.2e+02 Score=30.56 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=34.8
Q ss_pred ccchhhHHHHHHHHhcC--CeeEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeecccc
Q 002447 625 FNYKDADDMLDLCLNHN--IQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML 698 (921)
Q Consensus 625 ~~~~~~D~~v~~a~~~g--i~vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~ 698 (921)
-.|++...+-+.+..-- |.+||.+++= +- ..+ + +.++.|++..+.+--+.++..|-+|++.
T Consensus 70 dpwerlr~~r~~~~nt~lqmLlRG~n~vg--------y~-~yp-d---dvv~~fv~~a~~~Gidi~Rifd~lnd~~ 132 (468)
T PRK12581 70 DPWERLRTLKKGLPNTRLQMLLRGQNLLG--------YR-HYA-D---DIVDKFISLSAQNGIDVFRIFDALNDPR 132 (468)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccC--------cc-CCc-c---hHHHHHHHHHHHCCCCEEEEcccCCCHH
Confidence 34555566555554333 4456766541 11 111 1 2355567777777777888888888763
No 130
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=30.09 E-value=3.5e+02 Score=26.19 Aligned_cols=34 Identities=6% Similarity=0.241 Sum_probs=24.3
Q ss_pred eEEEecCCC-ceEEEEEEcCCCCccEEEeeEEecc
Q 002447 323 GKFLLNGSP-ARVVIYMEGPPPGADILVNSLVVKH 356 (921)
Q Consensus 323 g~ft~~~~~-~~~~ly~e~~~~~~~~yiDdv~l~~ 356 (921)
..|+++... ..+.|.++.......||||.+++.+
T Consensus 107 ~~~~~~~~~~~~~~i~i~~~~~~~~v~IDkIEFIP 141 (143)
T PF03944_consen 107 TPFTFSSNQSITITISIQNISSNGNVYIDKIEFIP 141 (143)
T ss_dssp SEEEESTSEEEEEEEEEESSTTTS-EEEEEEEEEE
T ss_pred ceEEecCCCceEEEEEEEecCCCCeEEEEeEEEEe
Confidence 457776654 4677777776665899999999875
No 131
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=30.06 E-value=69 Score=35.70 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHhcCCeeEE
Q 002447 627 YKDADDMLDLCLNHNIQTRG 646 (921)
Q Consensus 627 ~~~~D~~v~~a~~~gi~vrg 646 (921)
-++-|++.+||++.|+.+..
T Consensus 108 ~~rwd~l~~F~~~tG~~liF 127 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIF 127 (319)
T ss_dssp ----HHHHHHHHHHT-EEEE
T ss_pred hhHHHHHHHHHHHhCCEEEE
Confidence 34569999999999998764
No 132
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.83 E-value=2e+02 Score=27.60 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=47.9
Q ss_pred ccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCCC-HHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCcc
Q 002447 625 FNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLN-KNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFY 703 (921)
Q Consensus 625 ~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~~-~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~ 703 (921)
..|.....+|+.|++.|+.+..-. . .-.+.|..-.. +.+.++.+.+.|+.++.+|+- ..+|.-+.....-|.
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi-~----PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf--~v~D~s~~~y~~yfm 105 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVI-Q----PVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF--NVADFSDDEYEPYFM 105 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE---------HHHHHHTT--HHHHHHHHHHHHHHHHTTT----EEE-TTGTTSTTSB
T ss_pred ccHHHHHHHHHHHHHcCCceEEEe-c----CCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--EEEecccCCCCCcee
Confidence 456777889999999999998532 1 23467875321 345688999999999999984 667777765444444
Q ss_pred cc
Q 002447 704 QD 705 (921)
Q Consensus 704 ~~ 705 (921)
.+
T Consensus 106 ~D 107 (130)
T PF04914_consen 106 QD 107 (130)
T ss_dssp SS
T ss_pred ee
Confidence 44
No 133
>PRK12999 pyruvate carboxylase; Reviewed
Probab=29.38 E-value=4.9e+02 Score=34.61 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCeeeEEEeeccc
Q 002447 673 VQNRLTGLLARYKGKFRHYDVNNEM 697 (921)
Q Consensus 673 ~~~~i~~v~~rY~g~v~~WDVvNE~ 697 (921)
++.||+..+..--+.|+-+|-.|+.
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~lnd~ 653 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDSLNWV 653 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEeccCChH
Confidence 4456777676666677777777764
No 134
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.18 E-value=6.8e+02 Score=26.16 Aligned_cols=123 Identities=9% Similarity=0.084 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhcCCeeEEeeEEecccccchhh---hcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCccc
Q 002447 628 KDADDMLDLCLNHNIQTRGHCIFWEVQATVQPW---IQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQ 704 (921)
Q Consensus 628 ~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W---~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~ 704 (921)
...+..++.+++.|+.... .++ ...+.. ....+.++..+.+.+.|+.... .+..+ .+|=+..
T Consensus 67 ~~i~~~~~~~~~~g~~~i~-i~~----~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~-~g~~v----~~~~~~~----- 131 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIR-IFI----SVSDLHIRKNLNKSREEALERIEEAVKYAKE-LGYEV----AFGCEDA----- 131 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEE-EEE----ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH-TTSEE----EEEETTT-----
T ss_pred HHHHHHHHhhHhccCCEEE-ecC----cccHHHHHHhhcCCHHHHHHHHHHHHHHHHh-cCCce----EeCcccc-----
Confidence 4456777788889987642 222 112222 2234566666776666666544 34344 2221111
Q ss_pred ccCChhHHHHHHHHHHhcCCCceEEEec-CCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCC
Q 002447 705 DKLGKDIRAYMFKTAHQLDLSATLFVND-YHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSP 774 (921)
Q Consensus 705 ~~lg~~~~~~af~~ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p 774 (921)
....++++.+.++.+.++.++. +++.| ++.. .|..+.++++.++++--+ -.||+|+|=+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~-i~l~Dt~G~~-------~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~G 193 (237)
T PF00682_consen 132 SRTDPEELLELAEALAEAGADI-IYLADTVGIM-------TPEDVAELVRALREALPD-IPLGFHAHNDLG 193 (237)
T ss_dssp GGSSHHHHHHHHHHHHHHT-SE-EEEEETTS-S--------HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS
T ss_pred ccccHHHHHHHHHHHHHcCCeE-EEeeCccCCc-------CHHHHHHHHHHHHHhccC-CeEEEEecCCcc
Confidence 1245688999999999997766 45555 3332 367777888888875433 568888886544
No 135
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.59 E-value=61 Score=28.81 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=23.4
Q ss_pred ccceEEEEecCCCCccCCceeeEeeecCC
Q 002447 551 KRDVVLKLSGLDCSSMLGTFVKVKQTQNS 579 (921)
Q Consensus 551 k~~~~v~v~~~~g~p~~g~~v~v~~~~~~ 579 (921)
...++++|+|.+|.|+++.+|.+.-....
T Consensus 19 ~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~ 47 (92)
T smart00634 19 AITLTATVTDANGNPVAGQEVTFTTPSGG 47 (92)
T ss_pred cEEEEEEEECCCCCCcCCCEEEEEECCCc
Confidence 34678999999999999999888755443
No 136
>PF03424 CBM_17_28: Carbohydrate binding domain (family 17/28); InterPro: IPR005086 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. CBM17 from CAZY binds to amorphous cellulose and soluble beta-1,4-glucans, with a minimal binding requirement of cellotriose and optimal affinity for cellohexaose. Family 17 CBMs appear to have a very shallow binding cleft that may be more accessible to cellulose chains in non-crystalline cellulose than the deeper binding clefts of family 4 CBMs []. CBM28 from CAZY does not compete with CBM17 modules when binding to non-crystalline cellulose but does have a "beta-jelly roll" topology, which is similar in structure to the CBM17 domains. Sequence and structural conservation in families 17 and 28 suggests that they have evolved through gene duplication and subsequent divergence []. This entry includes family 17 and 28 which show structural homology. The domain is found in a number of alkaline cellulases.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 3ACI_A 3ACH_A 3ACF_A 3ACG_A 1J83_B 1J84_A 1UWW_A 1G0C_A 1G01_A.
Probab=28.08 E-value=2.9e+02 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=13.9
Q ss_pred EEEEeEEEe-cCccEEEEeEEEecC
Q 002447 135 LFIGKTSVS-KDNWENLEGTFSLSA 158 (921)
Q Consensus 135 ~~i~~~~~~-~~~Wt~l~g~ft~~~ 158 (921)
..|+-...+ .+.|.+-+.+|+++.
T Consensus 120 I~iA~~Pps~~~~WAn~~~a~~I~~ 144 (204)
T PF03424_consen 120 ISIAAIPPSALGYWANPSRAFNIDL 144 (204)
T ss_dssp EEEEEEEGGSGTT-EEBSS-EEEEG
T ss_pred EEEEEcCCccCccccCCccceeeCH
Confidence 344433434 678888888888764
No 137
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.00 E-value=8.1e+02 Score=26.66 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=57.3
Q ss_pred cCCcccchhhHHHHHHHHhcCCeeEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeecccccc
Q 002447 621 QQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHG 700 (921)
Q Consensus 621 ~~G~~~~~~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~ 700 (921)
..|+.|++...++++++.+.|+. .+++.. .-+=+..++.+|-++. ++.+++..++|+.-+ --...
T Consensus 15 ~dg~iD~~~l~~~i~~l~~~Gv~----gi~~~G---s~GE~~~ls~~Er~~~----~~~~~~~~~~~~~vi---~gv~~- 79 (292)
T PRK03170 15 EDGSVDFAALRKLVDYLIANGTD----GLVVVG---TTGESPTLTHEEHEEL----IRAVVEAVNGRVPVI---AGTGS- 79 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCC----EEEECC---cCCccccCCHHHHHHH----HHHHHHHhCCCCcEE---eecCC-
Confidence 35789999999999999999873 333321 1122234677764444 333333344554322 11100
Q ss_pred CcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC
Q 002447 701 SFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ 758 (921)
Q Consensus 701 ~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~ 758 (921)
..-+-..+..+.|+++..++.+++-=|-.. ...+..+++.+++.++
T Consensus 80 ------~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~------~~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 80 ------NSTAEAIELTKFAEKAGADGALVVTPYYNK------PTQEGLYQHFKAIAEA 125 (292)
T ss_pred ------chHHHHHHHHHHHHHcCCCEEEECCCcCCC------CCHHHHHHHHHHHHhc
Confidence 111223333445555667777665432211 1235666666777654
No 138
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=27.82 E-value=1.3e+02 Score=34.41 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=32.9
Q ss_pred ccccCCCccEEEeecceeEEEEEecCC-ceEEEE-EEEeCCCCcEEEEEEe
Q 002447 871 QGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKT-FVVDKGESPLVVTIDL 919 (921)
Q Consensus 871 ~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~-~~l~~~~~~~~~~~~~ 919 (921)
...||.+|.|....-.|.|.|+|+..| +..+++ +.|.. +.++.|++.|
T Consensus 323 ~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~-g~~~~~~~~L 372 (372)
T cd03868 323 NVTTAKFGDYWRLLLPGTYTITAVAPGYEPSTVTDVVVKE-GEATSVNFTL 372 (372)
T ss_pred ceEeCCCceEEecCCCEEEEEEEEecCCCceEEeeEEEcC-CCeEEEeeEC
Confidence 458999999975556799999999887 344444 44544 4446666554
No 139
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=27.78 E-value=1.4e+02 Score=33.37 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeeEEeeEEecccccchhhhcCC-C-HHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCc-ccccC
Q 002447 631 DDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSL-N-KNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSF-YQDKL 707 (921)
Q Consensus 631 D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~~~-~-~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~-~~~~l 707 (921)
-..++.|.+||.+|.| +++..- .....|+..+ . .++-...+.+.+-+++..|+ ++.|-|.-|...... -...+
T Consensus 45 ~~widaAHrnGV~vLG-Tiife~-~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yG--FDGw~iN~E~~~~~~~~~~~l 120 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLG-TIIFEW-GGGAEWCEELLEKDEDGSFPYADKLIEIAKYYG--FDGWLINIETPLSGPEDAENL 120 (311)
T ss_dssp HHHHHHHHHTT--EEE-EEEEEE-E--HHHHHHHT---TTS--HHHHHHHHHHHHHT----EEEEEEEESSTTGGGHHHH
T ss_pred chhHHHHHhcCceEEE-EEEecC-CchHHHHHHHHcCCcccccHHHHHHHHHHHHcC--CCceEEEecccCCchhHHHHH
Confidence 3488999999999999 555532 2234666542 2 22333456777888999997 899998777643321 00000
Q ss_pred ChhHHHHHHHHHHhcCCCceEEE
Q 002447 708 GKDIRAYMFKTAHQLDLSATLFV 730 (921)
Q Consensus 708 g~~~~~~af~~ar~~dP~a~L~~ 730 (921)
.++++..-+.+++ .|+.+|.-
T Consensus 121 -~~F~~~l~~~~~~-~~~~~v~W 141 (311)
T PF03644_consen 121 -IDFLKYLRKEAHE-NPGSEVIW 141 (311)
T ss_dssp -HHHHHHHHHHHHH-T-T-EEEE
T ss_pred -HHHHHHHHHHhhc-CCCcEEEE
Confidence 2567888888889 99888764
No 140
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=27.29 E-value=7.3e+02 Score=27.98 Aligned_cols=125 Identities=14% Similarity=-0.003 Sum_probs=74.4
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEecCC-CcCCCCCCCCHHHHHHHHHHHHHCCCc-eeeEEeeccCC------CC---C
Q 002447 707 LGKDIRAYMFKTAHQLDLSATLFVNDYH-VEDGCDPRSSPEKYIEHILNLQEQGAP-VGGIGIQGHID------SP---V 775 (921)
Q Consensus 707 lg~~~~~~af~~ar~~dP~a~L~~Ndy~-~~~~~~~~~~~~~~~~~i~~l~~~g~p-iDgIG~Q~H~~------~p---~ 775 (921)
+..+++.++++.+|+..|+..+...-.. +..... +......+.+++|+++|+. +.+.|+..+.. .| .
T Consensus 109 ~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~--~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~ 186 (351)
T TIGR03700 109 LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSK--ISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKIS 186 (351)
T ss_pred CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHH--HcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCC
Confidence 3458999999999999998887653211 000000 0000123556889999973 44557766531 12 1
Q ss_pred HHHHHHHHHHHhhcCCCEEEeee-ccCCCCccchHHHHHHHHHHHHcCCCeEEEEEEccC
Q 002447 776 GPIVCSALDNLGILGLPIWFTEL-DVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFW 834 (921)
Q Consensus 776 ~~~i~~~l~~~a~~glpi~iTE~-dv~~~~e~~qa~~~~~~l~~~~s~p~v~gi~~Wg~~ 834 (921)
..+..+.++...++|+++-.+-+ +. ..+.+.+.+.+..+-+.--....+..++-|.|.
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~ 245 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQ 245 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeeccc
Confidence 34566888888899999877754 33 223444555555544444444466777888777
No 141
>PLN02489 homocysteine S-methyltransferase
Probab=26.65 E-value=3e+02 Score=31.04 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhc--CCCEEEee
Q 002447 747 KYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGIL--GLPIWFTE 797 (921)
Q Consensus 747 ~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~--glpi~iTE 797 (921)
.|..+++.|++.| +|.|-+..- |...+++.+++.+... ++|+||+=
T Consensus 168 ~~~~qi~~l~~~g--vD~i~~ET~---~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 168 FHRRRLQVLAEAG--PDLIAFETI---PNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred HHHHHHHHHHhCC--CCEEEEecc---CChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 3445677777777 688887554 4446677777777655 58999983
No 142
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=26.61 E-value=5.8e+02 Score=29.03 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=64.4
Q ss_pred HHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhcCCCEE
Q 002447 715 MFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGILGLPIW 794 (921)
Q Consensus 715 af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~glpi~ 794 (921)
+|+.++++--+-++-.-.|..... .+.+++++..+ |+|-+-+|..+-.-......+.|+.-++-|++|.
T Consensus 132 ~~df~~kak~eGkIr~~GFSfHgs----------~e~~~~iv~a~-~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~ 200 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGFSFHGS----------TEVFKEIVDAY-PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIF 200 (391)
T ss_pred hHHHHHHHHhcCcEEEeeecCCCC----------HHHHHHHHhcC-CcceEEeeeeeeccchhcccHHHHHHHhCCCcEE
Confidence 466666666667777767776532 23445555555 5788766655422111223577777788999999
Q ss_pred EeeeccCC-----CCccch----HH-----HHHHHHHHHHcCCCeEEEEEEccCCCCC
Q 002447 795 FTELDVSS-----INEYVR----GE-----DLEVMLREAFAHPAVEGIMLWGFWELFM 838 (921)
Q Consensus 795 iTE~dv~~-----~~e~~q----a~-----~~~~~l~~~~s~p~v~gi~~Wg~~d~~~ 838 (921)
|-|=-=.. .++..+ .. -++-.++-+++||.|.-+ +=|.....+
T Consensus 201 IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~v-lsGm~~~~~ 257 (391)
T COG1453 201 IMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTV-LSGMNTPEQ 257 (391)
T ss_pred EEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEE-ecCCCCHHH
Confidence 98842111 111111 00 144578889999999865 446555433
No 143
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=25.96 E-value=1.4e+02 Score=33.24 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=40.8
Q ss_pred CeeEEee-EEecccccchhhhc--C----CCHHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCcccccCChhHHHH
Q 002447 642 IQTRGHC-IFWEVQATVQPWIQ--S----LNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAY 714 (921)
Q Consensus 642 i~vrgH~-L~W~~~~~~P~W~~--~----~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~~lg~~~~~~ 714 (921)
+.+||-+ |+|.. .|..-. . .+.++-..++.+|.+.+..|| |.|..-+.++.- -.+..+.+
T Consensus 216 vqiRGSVPl~W~Q---~~~~~~~p~i~i~~~~~~~~~af~kHf~~L~~~Y-~~i~~VNLl~~~---------~~E~~L~~ 282 (319)
T PF02383_consen 216 VQIRGSVPLFWSQ---PPNLKYKPPIKISRSSEENQPAFKKHFDELLKRY-GPIIIVNLLDKK---------GSEGKLSE 282 (319)
T ss_dssp EEEEE---SBS--------SSS----------HHHHHHHHHHHHHHHHHH-SEEEEEEE---S---------S---HHHH
T ss_pred eEecCCCCceeEc---CCCCCCCCCeEEEeccchhHHHHHHHHHHHHHhc-CceEEEEcccCC---------CCHHHHHH
Confidence 4578864 78863 333221 1 145667789999999999999 788888888321 12234555
Q ss_pred HHHHHHhcC-----CCceEEEecCCCc
Q 002447 715 MFKTAHQLD-----LSATLFVNDYHVE 736 (921)
Q Consensus 715 af~~ar~~d-----P~a~L~~Ndy~~~ 736 (921)
+|+.+-+.. ...+|-+..|++.
T Consensus 283 ~y~~~~~~~~~~~~~~~~i~y~~fDfh 309 (319)
T PF02383_consen 283 AYEEAVKKLNQKSPNNDKIKYIWFDFH 309 (319)
T ss_dssp HHHHHHHHH-------TTEEEEEE---
T ss_pred HHHHHHHHHhccccCcCCCcEEEeChh
Confidence 555433322 4455666655543
No 144
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=25.77 E-value=1.2e+03 Score=28.18 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=71.8
Q ss_pred hHHHHHHHHhcCCeeEEeeEEecccccchhhh---cCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCcccc-
Q 002447 630 ADDMLDLCLNHNIQTRGHCIFWEVQATVQPWI---QSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQD- 705 (921)
Q Consensus 630 ~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~---~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~- 705 (921)
.|+.++.+.+.|.... |.++ ...+-.. ...++++.++.+.+.|+...++ +.+|. +. =| +|+..
T Consensus 83 ~d~~~ea~~~~~~~~v-~i~~----~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~-g~~V~-~~--~e----~f~D~~ 149 (526)
T TIGR00977 83 EDKMLQALIKAETPVV-TIFG----KSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ-GDEVI-YD--AE----HFFDGY 149 (526)
T ss_pred hHHHHHHHhcCCCCEE-EEEe----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEE-EE--ee----eeeecc
Confidence 4778888888888643 4332 1112222 2346777777766666655544 33332 11 12 12211
Q ss_pred cCChhHHHHHHHHHHhcCCCceEEEec-CCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCC
Q 002447 706 KLGKDIRAYMFKTAHQLDLSATLFVND-YHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS 773 (921)
Q Consensus 706 ~lg~~~~~~af~~ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~ 773 (921)
...++|+.+.++.|.++.++.. .+-| .+. ..|..+.++++.|+++ ++.--||+|+|=+.
T Consensus 150 r~~~~~l~~~~~~a~~aGad~i-~i~DTvG~-------~~P~~v~~li~~l~~~-~~~~~i~vH~HND~ 209 (526)
T TIGR00977 150 KANPEYALATLATAQQAGADWL-VLCDTNGG-------TLPHEISEITTKVKRS-LKQPQLGIHAHNDS 209 (526)
T ss_pred cCCHHHHHHHHHHHHhCCCCeE-EEecCCCC-------cCHHHHHHHHHHHHHh-CCCCEEEEEECCCC
Confidence 2457999999999988766654 4444 222 2467888899988764 34335899999554
No 145
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=25.31 E-value=3.7e+02 Score=28.52 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=60.2
Q ss_pred hhHHHHHHHHhcCCeeEEeeEEecccccchhhhc------CCCHHHHHHHHHHHHHH---HHHHcCCeeeEEEeeccccc
Q 002447 629 DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQ------SLNKNDLMTAVQNRLTG---LLARYKGKFRHYDVNNEMLH 699 (921)
Q Consensus 629 ~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~~------~~~~~~l~~~~~~~i~~---v~~rY~g~v~~WDVvNE~~~ 699 (921)
..++.|++|++||+.+-.|+ ..|+-.. .++++++++.+.=-|-. +++-=++++.+.- -|
T Consensus 45 ~M~rtV~lA~e~gV~IGAHP-------gyPDl~gFGRr~m~~~~~e~~a~~lYQiGAL~a~~~a~G~~~~hVK-----pH 112 (252)
T COG1540 45 TMRRTVRLAKENGVAIGAHP-------GYPDLVGFGRREMALSPEELYAQVLYQIGALQAFARAQGGVVQHVK-----PH 112 (252)
T ss_pred HHHHHHHHHHHcCCeeccCC-------CCccccccCccccCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEec-----cc
Confidence 46889999999999999996 2455431 25788888766655544 4455556666654 25
Q ss_pred cCcccccCChhH-HHHHHHHHHhcCCCceEEE
Q 002447 700 GSFYQDKLGKDI-RAYMFKTAHQLDLSATLFV 730 (921)
Q Consensus 700 ~~~~~~~lg~~~-~~~af~~ar~~dP~a~L~~ 730 (921)
+..|.+...++- .....+.+++.||+..|+.
T Consensus 113 GALYN~~a~D~~la~av~~av~~~dp~L~l~~ 144 (252)
T COG1540 113 GALYNQAAKDRALADAVAEAVAAFDPSLILMG 144 (252)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhCCCceEEe
Confidence 555544444444 4455578888999999874
No 146
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=25.17 E-value=3.7e+02 Score=31.99 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhcCCCEEEeeeccCCCCccchHHHHHHHHHHHHcCCCeEEEE
Q 002447 750 EHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIM 829 (921)
Q Consensus 750 ~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~p~v~gi~ 829 (921)
.+|+++.+.|.|||||-+-.-+ |+.++-.+.++.|.+-|+|-..= ... --+.++.+++++.+||..-=|+
T Consensus 112 rLv~kara~G~~I~gvvIsAGI--P~le~A~ElI~~L~~~G~~yv~f----KPG----tIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGI--PSLEEAVELIEELGDDGFPYVAF----KPG----TIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCC--CcHHHHHHHHHHHhhcCceeEEe----cCC----cHHHHHHHHHHHhcCCCCceEE
Confidence 4678888888888888764433 55555555666665556654321 111 1334555666666666555454
Q ss_pred EE
Q 002447 830 LW 831 (921)
Q Consensus 830 ~W 831 (921)
-|
T Consensus 182 q~ 183 (717)
T COG4981 182 QW 183 (717)
T ss_pred EE
Confidence 44
No 147
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=24.96 E-value=3.5e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=16.5
Q ss_pred cCCCeEEEEEEEEeecCCCeEEEEEeC
Q 002447 490 NDDRWHEIGGSFRIEKQPSKVMVYIQG 516 (921)
Q Consensus 490 ~~~~W~~l~G~~~~~~~~~~~~iy~e~ 516 (921)
..+.|++|..+|.-. ...+.||+.+
T Consensus 88 ~~g~W~hv~~t~d~~--~g~~~lyvnG 112 (201)
T cd00152 88 SDGAWHHICVTWEST--SGIAELWVNG 112 (201)
T ss_pred CCCCEEEEEEEEECC--CCcEEEEECC
Confidence 577899999888633 2345566654
No 148
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=24.84 E-value=1.4e+02 Score=34.47 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=36.6
Q ss_pred CcccccCCCccEEEeecceeEEEEEecCC-ceEEEEEEEeCC-CCcEEEEEEe
Q 002447 869 HAQGHVDEQGEFAFRGFHGTYTIVIPTLH-KKIVKTFVVDKG-ESPLVVTIDL 919 (921)
Q Consensus 869 ~~~~~t~~~G~~~~r~f~G~y~v~v~~~~-~~~~~~~~l~~~-~~~~~~~~~~ 919 (921)
.....||.+|.|....-.|.|.|+++..| +..++++.|... +.+..|++.|
T Consensus 343 ~~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 343 RHDITTAEDGDYWRLLPPGIHIVSAQAPGYTKVMKRVTLPARMKRAGRVDFVL 395 (395)
T ss_pred ccceEECCCceEEEecCCCcEEEEEEecCeeeEEEEEEeCCcCCCceEeeeEC
Confidence 34567899999986667899999999887 467778888543 3445555443
No 149
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=24.80 E-value=81 Score=35.41 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=36.5
Q ss_pred ccccccccccccc-cCCccCCceEEEEEEEEEcCCCCcccEEEEEEEEeecCCCceeEEEEeEEEecCccEEEEeE
Q 002447 79 NRKECWQGLEQDI-TDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSETSYLFIGKTSVSKDNWENLEGT 153 (921)
Q Consensus 79 ~Rt~~w~G~~q~i-~~~l~~g~tY~~S~~Vk~~~~~~~~~~v~~~l~~~~~~~~~~Y~~i~~~~~~~~~Wt~l~g~ 153 (921)
-|++.|-+-.... ...|+.|.+|.++..+|.-.+ +...|...|.++.. + ..+.+++|..|+|+
T Consensus 66 vr~e~~ing~~~p~S~~le~G~~y~fki~lkar~p--G~~hvh~~~nv~~~--G--------p~~Gpg~~v~i~g~ 129 (381)
T PF04744_consen 66 VRKERWINGQPVPRSVSLELGGTYEFKIVLKARRP--GTWHVHPMLNVEDA--G--------PIVGPGQWVTIEGS 129 (381)
T ss_dssp EEEEEEETTEE-SS-B---TT-EEEEEEEEEE-S---EEEEEEEEEEETTT--E--------EEEEEEEEEEEES-
T ss_pred eeeeeeecCccccceEEeecCCeeeEEEEEecccC--ccccceeeEeeccC--C--------CCcCCceEEEEecc
Confidence 3677774433332 468999999999999996443 34677777766522 1 34577889888874
No 150
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=24.28 E-value=2.6e+02 Score=30.93 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhh--cCCCEEEeeeccCCCCccchHHHHHHHHHHHHcC
Q 002447 749 IEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGI--LGLPIWFTELDVSSINEYVRGEDLEVMLREAFAH 822 (921)
Q Consensus 749 ~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~--~glpi~iTE~dv~~~~e~~qa~~~~~~l~~~~s~ 822 (921)
...++-++++| ||.|++..=++ ..+...+|+.+-+ ..+|+|||= .+.......-.+..+.++...-..
T Consensus 151 k~qle~~~~~g--vD~L~fETip~---~~EA~a~l~~l~~~~~~~p~~is~-t~~d~g~l~~G~t~e~~~~~~~~~ 220 (317)
T KOG1579|consen 151 KQQLEVFLEAG--VDLLAFETIPN---VAEAKAALELLQELGPSKPFWISF-TIKDEGRLRSGETGEEAAQLLKDG 220 (317)
T ss_pred HHHHHHHHhCC--CCEEEEeecCC---HHHHHHHHHHHHhcCCCCcEEEEE-EecCCCcccCCCcHHHHHHHhccC
Confidence 35677888888 89999876543 3555666666655 578999994 343333333445555665544433
No 151
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=23.99 E-value=2.2e+02 Score=26.76 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=36.1
Q ss_pred ccccCCCccEE-EeecceeEEEEEecCCceEEEEEEEeCCCC-cEEEEEEe
Q 002447 871 QGHVDEQGEFA-FRGFHGTYTIVIPTLHKKIVKTFVVDKGES-PLVVTIDL 919 (921)
Q Consensus 871 ~~~t~~~G~~~-~r~f~G~y~v~v~~~~~~~~~~~~l~~~~~-~~~~~~~~ 919 (921)
-|.||..|.+. =.|-+|+|-|-....+...++.+++-.++. +..+.|.|
T Consensus 81 IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~~~is~v~dr~~~~vi~i~~ 131 (131)
T PF10794_consen 81 IGKTDEEGKIIWKNGRKGKYIVFLPNGETQETRNISLVEDRKEHTVINITV 131 (131)
T ss_pred ecccCCCCcEEEecCCcceEEEEEcCCCceeEEeeeeeecCCcceEeeecC
Confidence 47899999665 357799999999877767788888866655 66666543
No 152
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=23.45 E-value=1.6e+02 Score=33.40 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhcC-CCceEEEe-cCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccCCC
Q 002447 709 KDIRAYMFKTAHQLD-LSATLFVN-DYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS 773 (921)
Q Consensus 709 ~~~~~~af~~ar~~d-P~a~L~~N-dy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~ 773 (921)
++.++++-+..++.. |+++++.- +.+ .+-|+++.+.|+|||++|+-.|+..
T Consensus 263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGin--------------e~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 263 PELIKALRKALDENGGKHVKIIVSSGFD--------------AKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCC--------------HHHHHHHHHcCCCccEEecCccccc
Confidence 345556555666665 99998864 433 2446788889999999999888754
No 153
>PRK07534 methionine synthase I; Validated
Probab=23.20 E-value=2.8e+02 Score=31.23 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhcCCC---ceEEEec---CCCcC-C-CCC-C-CCHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHH
Q 002447 710 DIRAYMFKTAHQLDLS---ATLFVND---YHVED-G-CDP-R-SSPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIV 779 (921)
Q Consensus 710 ~~~~~af~~ar~~dP~---a~L~~Nd---y~~~~-~-~~~-~-~~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i 779 (921)
++++.+.+.||++.-. -.++..+ |+... + .+. . .....|..+++.|.+.| +|.|.+..= |+..++
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~g--vD~l~~ET~---p~l~E~ 159 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGG--ADVLWVETI---SAPEEI 159 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCC--CCEEEEecc---CCHHHH
Confidence 5677888888877422 1233332 22111 1 110 0 01234556788888877 688877433 455777
Q ss_pred HHHHHHHhhcCCCEEEe
Q 002447 780 CSALDNLGILGLPIWFT 796 (921)
Q Consensus 780 ~~~l~~~a~~glpi~iT 796 (921)
+.+++.+...++|+|++
T Consensus 160 ~a~~~~~~~~~~Pv~vS 176 (336)
T PRK07534 160 RAAAEAAKLAGMPWCGT 176 (336)
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 88888777789999987
No 154
>COG3233 Predicted deacetylase [General function prediction only]
Probab=22.91 E-value=5.2e+02 Score=27.20 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcCC--Cce-EEE----ecCCCcCCCCCCCCHHHHHHHHHHHHHCCCceeeEEeeccC--CC--CC---
Q 002447 710 DIRAYMFKTAHQLDL--SAT-LFV----NDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHI--DS--PV--- 775 (921)
Q Consensus 710 ~~~~~af~~ar~~dP--~a~-L~~----Ndy~~~~~~~~~~~~~~~~~~i~~l~~~g~piDgIG~Q~H~--~~--p~--- 775 (921)
.++...-+.+.++++ ... |++ |+|.+. +..+|++++.++.++| |-++++++- +. |.
T Consensus 18 ~~~~~i~~~ide~~~~~~t~lLViPn~~~~~~l~-------~d~rf~~~l~~r~e~G---del~lHGy~h~d~~~~gEF~ 87 (233)
T COG3233 18 PTLSNIDAAIDEYGAQNSTVLLVIPNHANDYPLS-------KDPRFVDLLTEREEEG---DELVLHGYDHIDTKRRGEFA 87 (233)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeeccCCCCCcc-------cChHHHHHHHHHHhcC---CEEEEechhhccccCccccc
Confidence 456666667777654 333 333 555553 3468999999999999 667776653 31 11
Q ss_pred -------HHHHHHHHHHHhhcCCCEEE
Q 002447 776 -------GPIVCSALDNLGILGLPIWF 795 (921)
Q Consensus 776 -------~~~i~~~l~~~a~~glpi~i 795 (921)
...+...++.|...|.|+++
T Consensus 88 ~l~~~eA~~RL~~a~~~l~~~G~~~~~ 114 (233)
T COG3233 88 CLRAHEARLRLMAAIEELEALGFPLRG 114 (233)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCccee
Confidence 12467778888899999554
No 155
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=22.52 E-value=86 Score=34.02 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.4
Q ss_pred CCCEEEeeeccCC
Q 002447 790 GLPIWFTELDVSS 802 (921)
Q Consensus 790 glpi~iTE~dv~~ 802 (921)
.+|||+||++.++
T Consensus 206 sKpIwftE~Gcpa 218 (299)
T PF13547_consen 206 SKPIWFTEYGCPA 218 (299)
T ss_pred CcceEEEecCCch
Confidence 6899999999874
No 156
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=21.61 E-value=3.9e+02 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.566 Sum_probs=16.0
Q ss_pred EcCCCeEEEEEEEEeecCCCeEEEEEeC
Q 002447 489 INDDRWHEIGGSFRIEKQPSKVMVYIQG 516 (921)
Q Consensus 489 ~~~~~W~~l~G~~~~~~~~~~~~iy~e~ 516 (921)
+..+.|++|..++.-.. ..+.+|+.+
T Consensus 87 ~~~g~W~hvc~tw~~~~--g~~~lyvnG 112 (206)
T smart00159 87 ESDGKWHHICTTWESSS--GIAELWVDG 112 (206)
T ss_pred ccCCceEEEEEEEECCC--CcEEEEECC
Confidence 45678888888776332 234555554
No 157
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=21.49 E-value=2.8e+02 Score=30.56 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhcCCC---c--eEE---EecCC-----CcCCCCCCCCH----HHHHHHHHHHHHCCCceeeEEeeccC
Q 002447 709 KDIRAYMFKTAHQLDLS---A--TLF---VNDYH-----VEDGCDPRSSP----EKYIEHILNLQEQGAPVGGIGIQGHI 771 (921)
Q Consensus 709 ~~~~~~af~~ar~~dP~---a--~L~---~Ndy~-----~~~~~~~~~~~----~~~~~~i~~l~~~g~piDgIG~Q~H~ 771 (921)
.++.+.+.+.||++... . .++ ++=|+ -+...+..... +.|..+++.|.+.| +|.|.+..-.
T Consensus 81 ~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~g--vD~l~~ET~~ 158 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYGLSFEELRDFHREQAEALADAG--VDLLLFETMP 158 (305)
T ss_dssp HHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCTT-HHHHHHHHHHHHHHHHHTT---SEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhccccccccHHHHHHHHHHHHHHHHhcC--CCEEEEecCc
Confidence 46788888888887544 1 233 33232 12111111122 33456788888888 7999987665
Q ss_pred CCCCHHHHHHHHHHHhh-cCCCEEEeeeccC------CC-CccchHHHHHHHHHHH
Q 002447 772 DSPVGPIVCSALDNLGI-LGLPIWFTELDVS------SI-NEYVRGEDLEVMLREA 819 (921)
Q Consensus 772 ~~p~~~~i~~~l~~~a~-~glpi~iTE~dv~------~~-~e~~qa~~~~~~l~~~ 819 (921)
+.. +++.+++.+.+ .++|+||+ |.+. .. +...-...+.+++..+
T Consensus 159 ~~~---E~~aa~~a~~~~~~~p~~is-~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 210 (305)
T PF02574_consen 159 SLA---EAKAALEAIKEVTGLPVWIS-FSCKDSGRLRDGTSLEDAVQVIDELLRAL 210 (305)
T ss_dssp -CS---CHHHHHHHHHHHHHCCSSEE-E-EEEEES-TCTTBCTTSHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHhhhhhhceec-cchhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 443 34444444444 56777765 2221 22 1222355666666655
No 158
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.81 E-value=9.9e+02 Score=27.07 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCeeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCC
Q 002447 664 LNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRS 743 (921)
Q Consensus 664 ~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~ 743 (921)
.++++..+.+.+.|+..-+ .+.+|.. .-....+.++.....++++.+..+.+.++..+ .|.+-|-.= ..
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~-~Gl~v~~---~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad-~I~l~DT~G------~a 223 (347)
T PLN02746 155 CSIEESLVRYREVALAAKK-HSIPVRG---YVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY-EISLGDTIG------VG 223 (347)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeEEE---EEEeeecCCccCCCCHHHHHHHHHHHHHcCCC-EEEecCCcC------Cc
Confidence 4666666655555554333 3434421 11111122233345678888888888887654 566666321 12
Q ss_pred CHHHHHHHHHHHHHCCCceeeEEeeccCCCC
Q 002447 744 SPEKYIEHILNLQEQGAPVGGIGIQGHIDSP 774 (921)
Q Consensus 744 ~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p 774 (921)
.+....++++.|+++ .|..-|++|+|-+..
T Consensus 224 ~P~~v~~lv~~l~~~-~~~~~i~~H~Hnd~G 253 (347)
T PLN02746 224 TPGTVVPMLEAVMAV-VPVDKLAVHFHDTYG 253 (347)
T ss_pred CHHHHHHHHHHHHHh-CCCCeEEEEECCCCC
Confidence 467788888888765 454458898886543
No 159
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.77 E-value=1.1e+03 Score=25.78 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCceeeEEeec-cCCCCCHHHHHHHHHHHh-hc-CCCEEE
Q 002447 747 KYIEHILNLQEQGAPVGGIGIQG-HIDSPVGPIVCSALDNLG-IL-GLPIWF 795 (921)
Q Consensus 747 ~~~~~i~~l~~~g~piDgIG~Q~-H~~~p~~~~i~~~l~~~a-~~-glpi~i 795 (921)
.-+++++...+.| +|+|=+-. ++..+..+++.+.++.++ .. ++||.|
T Consensus 84 ~ai~~a~~a~~~G--ad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 84 ESQELAKHAEELG--YDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred HHHHHHHHHHHcC--CCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3344555555555 34443222 222233344444444443 23 456555
No 160
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=20.69 E-value=3.5e+02 Score=28.09 Aligned_cols=109 Identities=10% Similarity=0.079 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcC-CeeeEEEeeccccccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHH
Q 002447 670 MTAVQNRLTGLLARYK-GKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKY 748 (921)
Q Consensus 670 ~~~~~~~i~~v~~rY~-g~v~~WDVvNE~~~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 748 (921)
+...+.||++.-.... +.|.+||+.+|++- .+..+.+..+|+...... --.+ +......
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~~~~-----t~~~---------~~~~~~s 78 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQAGEG-----TAEE---------KEALARS 78 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCccCCC-----CHHH---------HHHHHHH
Confidence 4455666776665554 57999999999963 132233332222111100 0000 0011223
Q ss_pred HHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHHHHHhhcCCCEEEeeeccC
Q 002447 749 IEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSALDNLGILGLPIWFTELDVS 801 (921)
Q Consensus 749 ~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l~~~a~~glpi~iTE~dv~ 801 (921)
-+++++|+++.. =.|+..+. +...++.++.-||.++..|+-...||=+..
T Consensus 79 d~l~~ef~aAD~--vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~ 128 (202)
T COG1182 79 DKLLEEFLAADK--VVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPV 128 (202)
T ss_pred HHHHHHHHhcCe--EEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcc
Confidence 356778877653 34444333 222357899999999999999999997754
No 161
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.66 E-value=4.4e+02 Score=28.25 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhcCCeeEEeeEEecccccchhhh-c-----CCCHHHHHHHHHHHHHH---HHHHcCCeeeEEEeeccccc
Q 002447 629 DADDMLDLCLNHNIQTRGHCIFWEVQATVQPWI-Q-----SLNKNDLMTAVQNRLTG---LLARYKGKFRHYDVNNEMLH 699 (921)
Q Consensus 629 ~~D~~v~~a~~~gi~vrgH~L~W~~~~~~P~W~-~-----~~~~~~l~~~~~~~i~~---v~~rY~g~v~~WDVvNE~~~ 699 (921)
..++.++.|++||..+=.|+= .|+-. + .++++++++.+..-|.. ++...+.++.+.- | |
T Consensus 45 ~M~~tv~lA~~~gV~IGAHPg-------ypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVK----P-H 112 (246)
T PRK05406 45 VMRRTVRLAKENGVAIGAHPG-------YPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVK----P-H 112 (246)
T ss_pred HHHHHHHHHHHcCCeEccCCC-------CCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeC----c-c
Confidence 457899999999999999963 34321 1 25788888877766654 5677777887764 2 5
Q ss_pred cCcccccCC-hhHHHHHHHHHHhcCCCceEEEe
Q 002447 700 GSFYQDKLG-KDIRAYMFKTAHQLDLSATLFVN 731 (921)
Q Consensus 700 ~~~~~~~lg-~~~~~~af~~ar~~dP~a~L~~N 731 (921)
+..|....- +++.+...+.+++.+|+..|+..
T Consensus 113 GALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~ 145 (246)
T PRK05406 113 GALYNMAAKDPALADAVAEAVAAVDPSLILVGL 145 (246)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 544433332 35666777889999999777653
No 162
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=20.62 E-value=5.9e+02 Score=31.28 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCCceEEEec---CCCcCCCCCCC---CHHHHHHHHHHHHHCCCceeeEEeeccCCCCCHHHHHHHH
Q 002447 710 DIRAYMFKTAHQLDLSATLFVND---YHVEDGCDPRS---SPEKYIEHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSAL 783 (921)
Q Consensus 710 ~~~~~af~~ar~~dP~a~L~~Nd---y~~~~~~~~~~---~~~~~~~~i~~l~~~g~piDgIG~Q~H~~~p~~~~i~~~l 783 (921)
++.+.|.+.||++.-.-.++..+ |+...+....+ -.+.|...++.|.+.| +|.|.+..- |...+++..+
T Consensus 83 ~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g--vD~l~~ET~---~~~~Ea~a~~ 157 (612)
T PRK08645 83 EINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQIDALLEEG--VDGLLLETF---YDLEELLLAL 157 (612)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCEEEEEcc---CCHHHHHHHH
Confidence 56778888888775221233222 22111100001 1133445677777777 688877554 4456677777
Q ss_pred HHHhhcC-CCEEEeeeccC
Q 002447 784 DNLGILG-LPIWFTELDVS 801 (921)
Q Consensus 784 ~~~a~~g-lpi~iTE~dv~ 801 (921)
+.+.+.+ +|+|++ |.+.
T Consensus 158 ~a~~~~~~~p~~~S-f~~~ 175 (612)
T PRK08645 158 EAAREKTDLPIIAQ-VAFH 175 (612)
T ss_pred HHHHHhCCCcEEEE-EEEC
Confidence 7776665 999988 4443
No 163
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.56 E-value=1.7e+02 Score=32.56 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHCCCceeeEEeeccCC-C-----------C-CHHHHHHHHHHHhhcCCCEEE
Q 002447 746 EKYIEHILNLQEQGAPVGGIGIQGHID-S-----------P-VGPIVCSALDNLGILGLPIWF 795 (921)
Q Consensus 746 ~~~~~~i~~l~~~g~piDgIG~Q~H~~-~-----------p-~~~~i~~~l~~~a~~glpi~i 795 (921)
...++++++++++++|+|+|-+..... . + .-|...+++++|.+.|+.+.+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~ 91 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAP 91 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEE
Confidence 455667777777777777775532110 0 0 013355666666666666554
No 164
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.07 E-value=9.4e+02 Score=26.58 Aligned_cols=107 Identities=9% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCcccchhhHHHHHHHHhcCCe---eEEeeEEecccccchhhhcCCCHHHHHHHHHHHHHHHHHHcCCeeeEEEeecccc
Q 002447 622 QGNFNYKDADDMLDLCLNHNIQ---TRGHCIFWEVQATVQPWIQSLNKNDLMTAVQNRLTGLLARYKGKFRHYDVNNEML 698 (921)
Q Consensus 622 ~G~~~~~~~D~~v~~a~~~gi~---vrgH~L~W~~~~~~P~W~~~~~~~~l~~~~~~~i~~v~~rY~g~v~~WDVvNE~~ 698 (921)
.|..|++...++++++.++|+. +-|++ -.. ..++ .+.-++-++.+++.-+||+...
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst---------GE~-~~Lt----~eEr~~v~~~~~~~~~grvpvi------- 81 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF---------GEC-ATLT----WEEKQAFVATVVETVAGRVPVF------- 81 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc---------ccc-hhCC----HHHHHHHHHHHHHHhCCCCCEE-------
Confidence 4788888888888888887762 22221 111 1122 3455666677777766665322
Q ss_pred ccCcccccCChhHHHHHHHHHHhcCCCceEEEecCCCcCCCCCCCCHHHHHHHHHHHHHC
Q 002447 699 HGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQ 758 (921)
Q Consensus 699 ~~~~~~~~lg~~~~~~af~~ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~i~~l~~~ 758 (921)
.+- ...+.+-..+..+.|+++..++.+++-=|-.-. ..+..+++.+.+.++
T Consensus 82 ~Gv---~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~------~~~~l~~yf~~va~a 132 (309)
T cd00952 82 VGA---TTLNTRDTIARTRALLDLGADGTMLGRPMWLPL------DVDTAVQFYRDVAEA 132 (309)
T ss_pred EEe---ccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCC------CHHHHHHHHHHHHHh
Confidence 100 001223333444455555667776665432111 234555556666553
Done!