Your job contains 1 sequence.
>002448
MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPT
EHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSP
PGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESID
NLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSES
SKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPP
KYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVAN
KLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSG
KQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW
LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE
SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR
GECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRR
EIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKM
ELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPS
PYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCR
TAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLST
EGIQFCFWKGKNYEIPVQSLY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002448
(921 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184432 - symbol:DME "DEMETER" species:3702 "A... 2211 3.7e-229 1
TAIR|locus:2044923 - symbol:DML1 "demeter-like 1" species... 1734 1.1e-183 3
TAIR|locus:2100138 - symbol:DML2 "demeter-like 2" species... 1477 3.4e-154 2
TAIR|locus:2124301 - symbol:DML3 "demeter-like protein 3"... 1132 1.4e-116 2
TAIR|locus:4515103342 - symbol:AT4G04957 "AT4G04957" spec... 167 2.9e-11 1
TAIR|locus:2100382 - symbol:AT3G47830 species:3702 "Arabi... 173 3.8e-10 1
TIGR_CMR|CHY_1121 - symbol:CHY_1121 "endonuclease III" sp... 87 2.1e-05 2
>TAIR|locus:2184432 [details] [associations]
symbol:DME "DEMETER" species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0019104 "DNA
N-glycosylase activity" evidence=ISS;IDA] [GO:0043078 "polar
nucleus" evidence=IDA] [GO:0006349 "regulation of gene expression
by genetic imprinting" evidence=IMP] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA;IDA] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00525 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0009793 GO:GO:0043078 GO:GO:0006306
GO:GO:0004519 GO:GO:0003906 GO:GO:0006349 EMBL:AF521596
EMBL:DQ335243 EMBL:AL162875 EMBL:AK117994 EMBL:BT005357
IPI:IPI00516439 IPI:IPI00534354 IPI:IPI00760328 PIR:T48452
PIR:T48453 PIR:T48454 RefSeq:NP_001078527.1 RefSeq:NP_196076.2
UniGene:At.33104 ProteinModelPortal:Q8LK56 SMR:Q8LK56 STRING:Q8LK56
PaxDb:Q8LK56 PRIDE:Q8LK56 EnsemblPlants:AT5G04560.2 GeneID:830335
KEGG:ath:AT5G04560 TAIR:At5g04560 eggNOG:COG0177
HOGENOM:HOG000112227 InParanoid:Q8LK56 OMA:CTEITES PhylomeDB:Q8LK56
ProtClustDB:CLSN2690787 Genevestigator:Q8LK56 GO:GO:0019104
Uniprot:Q8LK56
Length = 1987
Score = 2211 (783.4 bits), Expect = 3.7e-229, P = 3.7e-229
Identities = 480/922 (52%), Positives = 597/922 (64%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYN-GECXXXXX 235
E N S+ F Q N + Q SS YE T +L+ E + G
Sbjct: 1227 EKTMNWKDSVCFGQPRNDTNWQTTP--SSSYEQCATRQPHVLDIEDFGMQGEGLGYSWMS 1284
Query: 236 XXXXXXKAKNESYARAQ-QPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNAS 294
+ KN++ R + + Q STP ++ L + Q +
Sbjct: 1285 ISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHELPGMG---LSGSSSAVQEHQD 1341
Query: 295 QTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKT-RNLG 353
T+ + + + H ++TF + ++ +E+ + +QN+ G + ++T ++
Sbjct: 1342 DTQHNQQDEMNKAS---HLQKTF-LDLLNSSEECLTRQSSTKQNITDGCLPRDRTAEDVV 1397
Query: 354 DDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRK-ADGEKKNAIDWESLR 412
D +S + L N L+E NS + +A + Y ETN I + K ADG+K + W+SLR
Sbjct: 1398 DPLSNNSSLQ-NILVESNSSNKEQTAVE-YKETNATILREMKGTLADGKKPTS-QWDSLR 1454
Query: 413 KEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
K+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R+KDFL R+V++
Sbjct: 1455 KDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKD 1514
Query: 473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR+GW
Sbjct: 1515 HGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGW 1574
Query: 533 VXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
V VLESIQK+LWPRLCKLDQRTLYELHYQLITFGKVFCTKS+P
Sbjct: 1575 VPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRP 1634
Query: 593 NCNACPMRGECXXXXXXXXXXXXXXPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEK 652
NCNACPMRGEC P PEE+S+ S+T+P E P V I + LP P +
Sbjct: 1635 NCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLE 1694
Query: 653 SSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNIEEF 708
SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNIE+F
Sbjct: 1695 KSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQF 1752
Query: 709 TVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLL 768
+ L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQVYELPDSH LL
Sbjct: 1753 GMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLL 1812
Query: 769 EGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNS 828
+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC CNS+RE NS
Sbjct: 1813 DGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANS 1872
Query: 829 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 888
QTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFG
Sbjct: 1873 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFG 1932
Query: 889 TSVSSIFKGLSTEGIQFCFWKG 910
TSV+SIF+GLSTE IQFCFWKG
Sbjct: 1933 TSVTSIFRGLSTEQIQFCFWKG 1954
>TAIR|locus:2044923 [details] [associations]
symbol:DML1 "demeter-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006281 "DNA
repair" evidence=IEA;IMP] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS;IDA] [GO:0006342 "chromatin silencing"
evidence=IMP] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS;IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IDA] [GO:0031936
"negative regulation of chromatin silencing" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=IMP] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00478 SMART:SM00525 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 EMBL:AC006919 GO:GO:0080111 GO:GO:0031936
GO:GO:0006342 GO:GO:0006306 GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 GO:GO:0019104 EMBL:AY286009 IPI:IPI00517101
PIR:D84781 RefSeq:NP_181190.3 UniGene:At.14091
ProteinModelPortal:Q9SJQ6 SMR:Q9SJQ6 STRING:Q9SJQ6 PaxDb:Q9SJQ6
PRIDE:Q9SJQ6 EnsemblPlants:AT2G36490.1 GeneID:818224
KEGG:ath:AT2G36490 TAIR:At2g36490 HOGENOM:HOG000154178
InParanoid:Q9SJQ6 OMA:ANTASLI PhylomeDB:Q9SJQ6
ProtClustDB:CLSN2915131 Genevestigator:Q9SJQ6 GermOnline:AT2G36490
Uniprot:Q9SJQ6
Length = 1393
Score = 1734 (615.5 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
Identities = 331/522 (63%), Positives = 399/522 (76%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K K +K E+K A DW+ LR+E Q +G +E++R MD++D++A+R A+VKE++E IK
Sbjct: 843 KEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKS 902
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
RGMN+ LAER++ FL+RLV +HGSIDLEWLRDVPPDKAK+YLLS GLGLKSVECVRLLT
Sbjct: 903 RGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLT 962
Query: 512 LHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRT 571
LHHLAFPVDTNVGRIAVRLGWV +LESIQKYLWPRLCKLDQ+T
Sbjct: 963 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKT 1022
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECXXXXXXXXXXXXXXPGPEEKSIVSSTMP 631
LYELHYQ+ITFGKVFCTKSKPNCNACPM+GEC P E+ M
Sbjct: 1023 LYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEKG------MG 1076
Query: 632 TMAERNPSVVINPMPLPSPEKSSL---AEVRREIGKCEPIIEEPATPEQECTEITESDIE 688
T ++NP + P P + S + +E +++ CEPIIEEPA+PE E E++ +DIE
Sbjct: 1077 T-PDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIE 1135
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKN 748
+AF+EDP+EIPTI+LN++ FT NL+ M+ ELQ+ +MS ALVAL + AS+P PKLKN
Sbjct: 1136 EAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKN 1195
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKES 808
+S+LRTEH+VYELPD HPLL +++REPDDP YLLAIWTPGETA+SIQ S C + +
Sbjct: 1196 ISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQAN 1255
Query: 809 GKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
G LCDE+TCFSCNS++ET SQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSLN
Sbjct: 1256 GMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLN 1315
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PI+VPRE +W LPRR VYFGTSV +IFKGLSTE IQ CFWKG
Sbjct: 1316 PINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKG 1357
Score = 46 (21.3 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 391 SKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423
+++ + + +G+ + A + ES +E Q +SG QE
Sbjct: 199 AENGENQTNGDIREAGEMESALQEKQLDSGNQE 231
Score = 40 (19.1 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 323 SIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLS 363
++ +Q H + L + + V + M + GD +++AN S
Sbjct: 32 TVEDQYHSSQLEERRFVGNKDMSGLDHLSFGDLLALANTAS 72
>TAIR|locus:2100138 [details] [associations]
symbol:DML2 "demeter-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0006306 "DNA
methylation" evidence=RCA] InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764 SMART:SM00525
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 eggNOG:COG0177 EMBL:AC010927
IPI:IPI00533587 RefSeq:NP_187612.5 UniGene:At.40005
ProteinModelPortal:Q9SR66 STRING:Q9SR66 PaxDb:Q9SR66 PRIDE:Q9SR66
GeneID:820162 KEGG:ath:AT3G10010 TAIR:At3g10010 InParanoid:Q9SR66
OMA:STHCELN Genevestigator:Q9SR66 GermOnline:AT3G10010
Uniprot:Q9SR66
Length = 1332
Score = 1477 (525.0 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
Identities = 307/539 (56%), Positives = 361/539 (66%)
Query: 388 PNISKSKKRKADGEK---KNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
P SK KK+ + K K ++DW+SLRKE + K+ER+ MD++D++ALRC +V +
Sbjct: 768 PTTSKPKKKSKESAKSTQKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHK 827
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I+ I +RGMNNMLAER+K FLNRLV++HGSIDLEWLRDVPPDKAK+YLLSI GLGLKSV
Sbjct: 828 IANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSV 887
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRL 564
ECVRLL+LH +AFPVDTNVGRIAVRLGWV VLES+QKYLWPRL
Sbjct: 888 ECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRL 947
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECXXXXXXXXXXXXXXPGPEEKS 624
CKLDQ+TLYELHY +ITFGKVFCTK KPNCNACPM+ EC P PEE
Sbjct: 948 CKLDQKTLYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESD 1007
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITE 684
S + + VV+N P + E +R CEPIIEEPA+PE E E
Sbjct: 1008 RTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPEPE---YIE 1063
Query: 685 SDIED--------AFYEDP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALV 732
DIED EDP D IPTI LN E T + + + +E S LV
Sbjct: 1064 HDIEDYPRDKNNVGTSEDPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLV 1117
Query: 733 ALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGET 792
L+ AA+IP KLK +LRTEH V+ELPD H +LEG +RRE +D PYLLAIWTPGET
Sbjct: 1118 VLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGET 1177
Query: 793 ANSIQLPESRCRSKESGK-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNG 851
NSIQ P+ RC ES LC+E CF CN RE SQTVRGT+LIPCRTAMRG FPLNG
Sbjct: 1178 VNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNG 1237
Query: 852 TYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
TYFQ NEVFADHDSS+NPIDVP E +W+L RR+ Y G+SVSSI KGLS E I++ F +G
Sbjct: 1238 TYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1296
Score = 48 (22.0 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 264 QQNGLSTPEKML---SASPYVLLKKPTMQ-QPNASQ-TRSPPKYDQSCCDIYQHER 314
QQ +STP+K L + +P L+ T + +P + Q T P S D H+R
Sbjct: 115 QQYDVSTPQKFLCDLNLTPEELVSTSTQRTEPESPQITLKTPGKSLSETDHEPHDR 170
Score = 42 (19.8 bits), Expect = 1.5e-153, Sum P(2) = 1.5e-153
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1 MSLAARFPLK--SNKRTCNID-GTNILVE 26
M LAA FP++ NK +C+ + G+++ E
Sbjct: 588 MDLAAEFPVEWNFNKGSCHEEWGSSVTQE 616
>TAIR|locus:2124301 [details] [associations]
symbol:DML3 "demeter-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0010216 "maintenance of DNA methylation" evidence=IMP]
[GO:0019104 "DNA N-glycosylase activity" evidence=IDA]
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR011257
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 EMBL:AL021961 EMBL:AL161584
GO:GO:0010216 eggNOG:COG0177 GO:GO:0019104 EMBL:AY735663
IPI:IPI00525973 PIR:T05430 RefSeq:NP_195132.3 UniGene:At.51042
ProteinModelPortal:O49498 SMR:O49498 STRING:O49498 PRIDE:O49498
EnsemblPlants:AT4G34060.1 GeneID:829552 KEGG:ath:AT4G34060
TAIR:At4g34060 HOGENOM:HOG000064650 OMA:WARIASS PhylomeDB:O49498
ProtClustDB:CLSN2681626 Genevestigator:O49498 Uniprot:O49498
Length = 1044
Score = 1132 (403.5 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 243/536 (45%), Positives = 321/536 (59%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW +LR+ + + E MDS+++ +R +
Sbjct: 479 EDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEM---HMDSVNWSDVRLSGQNV 535
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ IK+RG +L+ER+ FLN V ++G+IDLEWLR+ P K YLL I G+GLKS
Sbjct: 536 LETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSA 595
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRL 564
ECVRLL L H AFPVDTNVGRIAVRLG V ++SIQKYLWPRL
Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRL 655
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECXXXXXXXXXXXXXXPGPEEKS 624
CKL Q TLYELHYQ+ITFGKVFCTK+ PNCNACPM+ EC PEEK
Sbjct: 656 CKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM 715
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEIT 683
+T M + V ++ + + ++ + C +P++E P++P E E T
Sbjct: 716 HEPNTF--MNAHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST 773
Query: 684 ESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQSYM--QEKMELQECDMSKALVALNPD 737
DIED Y+ +P I +++ +++ + +M + ++SKALV P+
Sbjct: 774 --DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPE 831
Query: 738 AASIPA-P--KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
A IP P K+K +RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PGET++
Sbjct: 832 NACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSS 891
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+ +C S + KLC K C C ++RE NS RGT+LIPCRTAMRG+FPLNGTYF
Sbjct: 892 SFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 855 QVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
Q NEVFADH++SLNPI RE L +R +Y G++V+SIFK L T I+ CFW G
Sbjct: 951 QTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTG 1006
Score = 37 (18.1 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 248 YARAQQPAEDIGETMV----QQNGLSTPEKMLSASPYVLL--KKPTMQQPNASQTRS 298
++ ++ +DI + + ++N TP+K+ P +L KKP + P ++ R+
Sbjct: 55 HSESEHLQDDISQRVTGKGRRRNSKGTPKKLRFNRPRILEDGKKP--RNPATTRLRT 109
>TAIR|locus:4515103342 [details] [associations]
symbol:AT4G04957 "AT4G04957" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161502
IPI:IPI00891322 RefSeq:NP_001118934.1 UniGene:At.69420
EnsemblPlants:AT4G04957.1 GeneID:6240683 KEGG:ath:AT4G04957
TAIR:At4g04957 eggNOG:euNOG04714 PhylomeDB:B3H5Q5
ProtClustDB:CLSN2925558 Genevestigator:B3H5Q5 InterPro:IPR015410
Pfam:PF09331 Uniprot:B3H5Q5
Length = 78
Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 859 VFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
+FADH SSLNPIDVPRE +W+LPRR V+FGTS+ +IFK GIQ
Sbjct: 30 MFADHASSLNPIDVPRELIWDLPRRTVFFGTSIPTIFKDSKEAGIQ 75
>TAIR|locus:2100382 [details] [associations]
symbol:AT3G47830 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] InterPro:IPR003265
InterPro:IPR011257 Pfam:PF00730 SMART:SM00478 EMBL:CP002686
GO:GO:0003824 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 KO:K10773 IPI:IPI00545586
RefSeq:NP_566893.1 UniGene:At.53825 ProteinModelPortal:F4JCQ3
SMR:F4JCQ3 PRIDE:F4JCQ3 EnsemblPlants:AT3G47830.1 GeneID:823937
KEGG:ath:AT3G47830 OMA:FGREYCS Uniprot:F4JCQ3
Length = 293
Score = 173 (66.0 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 40/94 (42%), Positives = 54/94 (57%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A K I AI+ G+ A +K+ LNRL E G + LE+LR + ++ K L +G+
Sbjct: 134 AESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGV 193
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G K+V CV + L H FPVDT+V IA LGWV
Sbjct: 194 GPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWV 227
>TIGR_CMR|CHY_1121 [details] [associations]
symbol:CHY_1121 "endonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_359967.1
ProteinModelPortal:Q3AD17 STRING:Q3AD17 GeneID:3726382
KEGG:chy:CHY_1121 PATRIC:21275382
BioCyc:CHYD246194:GJCN-1120-MONOMER Uniprot:Q3AD17
Length = 210
Score = 87 (35.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+E+S I+ G+ A + L RE HG + PD + LL + G+G
Sbjct: 70 EELSRQIRSLGLYRNKARNLIKIAEILDREYHGQV---------PDSFAE-LLKLPGVGP 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLG 531
K+ E + + + +FPVDT+V R+A RLG
Sbjct: 120 KTAEVIVGVGFNKPSFPVDTHVFRVARRLG 149
Score = 86 (35.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+LH++LI FG+ C KP+CN CP C
Sbjct: 174 DLHHRLIFFGRRICKAQKPSCNICPFPEFC 203
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 921 878 0.00085 122 3 11 23 0.45 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 626 (67 KB)
Total size of DFA: 456 KB (2215 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 93.87u 0.09s 93.96t Elapsed: 00:00:06
Total cpu time: 93.87u 0.09s 93.96t Elapsed: 00:00:06
Start: Tue May 21 02:08:46 2013 End: Tue May 21 02:08:52 2013