BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002448
(921 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 2198
Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/932 (62%), Positives = 684/932 (73%), Gaps = 33/932 (3%)
Query: 1 MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGS-SQSSITP 56
MSL +RFPL +SNK T + +ILVEEPEVCI +++I+WHE + H +Q+ +
Sbjct: 1242 MSLVSRFPLHPESNK-TSYSNEASILVEEPEVCIMNPDDTIKWHEKVSHQQVYNQAFVAY 1300
Query: 57 HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
E +EH+R SG +TSL EEE++SSQDS++S+++Q+ +RSCSGSNSEA
Sbjct: 1301 SESSEHRRDSPDSGTSETSLVGAPNQRAEEEVMSSQDSVNSSVVQTTV-LRSCSGSNSEA 1359
Query: 117 EDSPPGCKLD----NGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQ 172
ED G K + + S N + + Q+ N SS F E R+++ Q
Sbjct: 1360 EDPTTGHKTNKVQASASTNILYMEKTFMSQECQYHANKSSNFDENTMRYRK--------Q 1411
Query: 173 ESGLESIDNLGSSLTFTQLLNFNSPQNQVGF--SSDYEPHMTSYSELLEAEGSEIYNGE- 229
L+ ++N S + T L+N + Q SS+Y HMT S +LE E ++ E
Sbjct: 1412 NPRLDRVENHTESSSLTYLINSGNSNKQAPAVPSSNYRLHMTPDSGILEVECLQVLGEES 1471
Query: 230 CSSWPSISSESSKAKNESYAR--AQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPT 287
SSWPS +S + K+ ++ QQ E I +T QQNGL ++ +P LL+
Sbjct: 1472 ISSWPSAASGIANPKDVNWTSKGTQQMTESIRKTTAQQNGLMNLQEATVGNPNALLRNYP 1531
Query: 288 MQQPNASQTRSPPKYDQSCCDIYQHER-RTFQCES------ISIAEQMHHTDLAKEQNVP 340
MQQ ++ Q + D+ C + ER +TFQ +S + AE + +P
Sbjct: 1532 MQQ-SSMQPGCTTENDKQSCKNHDLERTKTFQMQSMPSREPLKPAEALDTRRDTTMHQIP 1590
Query: 341 SGSMLAEKTRNLGDDISVANK--LSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKA 398
+ L E+ N+ + S +K +N+++EP S EQV S++K T NI K KK K
Sbjct: 1591 NVPELTEEASNVRERDSAVDKQICLENEVLEPLSREQVHSSNKESGGTTTNILKPKKEKV 1650
Query: 399 DGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458
+G KK A DW+SLRK+VQ N K+ERS+D MDSLDYEA+RCA+V ISEAIKERGMNNML
Sbjct: 1651 EGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNNML 1710
Query: 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
AER+KDFLNRLVREHGSIDLEWLRD PPDKAKDYLLSIRGLGLKSVECVRLLTLH LAFP
Sbjct: 1711 AERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLAFP 1770
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ
Sbjct: 1771 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELHYQ 1830
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNP 638
LITFGKVFCTK KPNCNACPMRGECRHFASAFASARLALP PEEKSIVSST P++A+RNP
Sbjct: 1831 LITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADRNP 1890
Query: 639 SVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
+ INP+PLPS E + L + ++ KCEPIIE PATPE +C E ESDIEDAFYEDPDEI
Sbjct: 1891 TAFINPIPLPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYEDPDEI 1950
Query: 699 PTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQV 758
PTIKLN EEFT+NLQ+YMQE MELQE DMSKALVAL+P A SIP PKLKNVSRLRTEHQV
Sbjct: 1951 PTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEHQV 2010
Query: 759 YELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCF 818
YELPDSHPLL+GMD REPDDPSPYLLAIWTPGETANS Q PE RC S+E GKLC+EKTCF
Sbjct: 2011 YELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKTCF 2070
Query: 819 SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
SCNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS+NPIDVPR W+W
Sbjct: 2071 SCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAWIW 2130
Query: 879 NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NLPRR VYFGTSV+SIF+GL TEGIQ+CFW+G
Sbjct: 2131 NLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRG 2162
>gi|255580114|ref|XP_002530889.1| conserved hypothetical protein [Ricinus communis]
gi|223529542|gb|EEF31495.1| conserved hypothetical protein [Ricinus communis]
Length = 1876
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/929 (61%), Positives = 680/929 (73%), Gaps = 51/929 (5%)
Query: 1 MSLAARFPLKSNK-RTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
M+LAA+FPLKS + RTC D L++EP++ + N +I+WHE L P +QSS+TPHE
Sbjct: 949 MNLAAKFPLKSMRNRTCERDEPRRLIQEPDIYMLNPNPTIKWHEKLLTPFYNQSSMTPHE 1008
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
EH+R +E S +TS+ E H EEE++SSQDS S+I+QSNG IRS SGSN EAED
Sbjct: 1009 SIEHRRDQETSCTERTSIVEAHSYSPEEEVLSSQDSFDSSIVQSNGVIRSYSGSNLEAED 1068
Query: 119 SPPGCKLD--NGSANFQQVGNATLFQDFYSCINDSSLFQEG-YHRFKQAEDGGNFQQESG 175
GCK + + ++N Q++ F++F+S ++ SLF EG HR ++ ED + QQ +
Sbjct: 1069 PAKGCKHNENHNTSNAQKLE----FEEFFSHVSGRSLFHEGSRHRHRELEDLEDGQQWTR 1124
Query: 176 LESIDN-LGSSLTFTQLLNFNSPQNQVGFSSD--YEPHMTSYSELLEAEGSEIYNGECSS 232
L+ +DN L S TF Q N N+ Q Q S Y S ++ + + C+S
Sbjct: 1125 LDRLDNSLKGSSTFNQHDNSNNSQLQTRVESSQLYREDSISSWPSSTSKVGKEKDASCTS 1184
Query: 233 WPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLST-PEKMLSASPYVLLKKPTMQQP 291
R Q AE++ + QQ G PE + S L K+ +Q
Sbjct: 1185 ----------------IRVLQGAENVAKPTTQQYGSEKYPETSTAESHAFLCKQLMHEQS 1228
Query: 292 NASQTRSPPKYDQSCCDIYQHE-RRTFQCESISIAEQMHHTDL------AKEQNVPSGSM 344
N P Y S HE +TFQ S SIAE ++ +D + Q+V +
Sbjct: 1229 N------PQLYHGS----QSHEMNKTFQLGSKSIAEPVNLSDAQDYRQSSYGQHVSNIPQ 1278
Query: 345 LAEKTRNLGDDISVA-NKLSD--NKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
LA K ++ + I++ NK +D N I NS E +K N N SK++K KA+
Sbjct: 1279 LAAKVFDVEERITLMDNKQTDSENNFIGSNSKENTHFTNKA--NLNRNASKARKAKAESG 1336
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+K+A+DW+SLRK+V N K+ERS MDSLDYEA+R A+V EIS+ IKERGMNNMLAER
Sbjct: 1337 QKDAVDWDSLRKQVLVNGRKKERSESAMDSLDYEAMRSAHVNEISDTIKERGMNNMLAER 1396
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFLNRLVREHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKSVECVRLLTLHHLAFPVDT
Sbjct: 1397 IKDFLNRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 1456
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ+IT
Sbjct: 1457 NVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMIT 1516
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTKS+PNCNACPMR ECRHFASAFASARLALPGPE+KSIV++T+P ER+P +V
Sbjct: 1517 FGKVFCTKSRPNCNACPMRAECRHFASAFASARLALPGPEDKSIVTATVPLTTERSPGIV 1576
Query: 642 INPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTI 701
I+P+PLP E + L +I C PIIEEPATPEQE TE+ ESDIED F EDPDEIPTI
Sbjct: 1577 IDPLPLPPAEDNLLTRRGSDIVSCVPIIEEPATPEQEHTEVIESDIEDIFDEDPDEIPTI 1636
Query: 702 KLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYEL 761
KLN+EE TVNLQ+YMQ MELQECDMSKALVALNP+AASIP PKLKNVSRLRTEHQVYEL
Sbjct: 1637 KLNMEELTVNLQNYMQANMELQECDMSKALVALNPEAASIPTPKLKNVSRLRTEHQVYEL 1696
Query: 762 PDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCN 821
PDSHPLL MD+R+PDDPSPYLLAIWTPGETANSIQ PE C+ + KLC+E+TCFSCN
Sbjct: 1697 PDSHPLLNRMDKRQPDDPSPYLLAIWTPGETANSIQPPERHCQFQGPDKLCNEQTCFSCN 1756
Query: 822 SMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLP 881
S+RETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADH+SSLNPIDVPR W+WNLP
Sbjct: 1757 SIRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPIDVPRAWIWNLP 1816
Query: 882 RRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
RRMVYFGTSVS+IFKGLSTEGIQ+CFWKG
Sbjct: 1817 RRMVYFGTSVSTIFKGLSTEGIQYCFWKG 1845
>gi|330370551|gb|AEC12445.1| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase
[Gossypium hirsutum]
Length = 2055
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/962 (59%), Positives = 677/962 (70%), Gaps = 73/962 (7%)
Query: 1 MSLAARFPLKSN-KRTCNIDGTNILVEEPEVC-ICANESIQWHEL-LRHPGSSQSSITPH 57
MSLAA+FPLKS+ K CN + T IL+EEPEVC + + E+I+WHE RH SQSS+TP+
Sbjct: 1107 MSLAAKFPLKSSCKGDCNAERTTILIEEPEVCELNSEETIKWHEKPFRHQLDSQSSMTPN 1166
Query: 58 EPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAE 117
T++QR E SG+ +TS + LEEE++SSQ S S+++Q+NGGIR+ SGS SE E
Sbjct: 1167 RSTDYQRNSEYSGIERTSFMGTYSQSLEEEVLSSQGSFDSSVIQANGGIRTYSGSYSETE 1226
Query: 118 DSPPGCK-LDNGSANFQQVGNATLFQDFYSCINDSSLFQEG--YHRFKQAEDGGNFQQES 174
D CK L + Q+ N+ ++FY C + SS EG Y + + E+G Q S
Sbjct: 1227 DPTMSCKFLSIHGSTLDQIENSASVEEFYHCASGSSQLHEGIKYKQSEVTEEG----QTS 1282
Query: 175 GLESIDNLGSSLTFTQLLNFNSPQNQV-GFSSDYEP-HMTSYSELLEAEGSEIYNGEC-S 231
LE +NL S +F Q NF + Q +V F + P HMT SE E EG E + EC S
Sbjct: 1283 RLERTENLKWSSSFNQGNNFRNQQFRVQAFGASSHPLHMTLESEPWEGEGLEPFREECMS 1342
Query: 232 SWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQP 291
SW S +S +K K QP ++ G+ MVQ NG + M + + L + M Q
Sbjct: 1343 SWASTASGLNKPK--------QPGQNGGKIMVQHNGQPISQDMATTTLNTLSGEHIMHQK 1394
Query: 292 NASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLA--EKT 349
TRS C+ +Q +R+ FQ ES S+ +AK Q S S+ EK
Sbjct: 1395 EV-HTRS-----NQLCNNHQEKRKDFQSESTSVTMPPTTDAVAKMQKSTSLSVTTHQEKR 1448
Query: 350 RNLGDD---------------------ISVAN--------------------KLSDNKLI 368
++ + +S AN K ++N+ +
Sbjct: 1449 KDFQSESASVTMPPSTDAVTKMQKSTSLSAANTHKLTERPSDIERMTASDKDKATENREV 1508
Query: 369 EPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDR 428
+ N+ E + S+ E++ K K+RKA K NA DW+ LRK+VQ N K+ERS+D
Sbjct: 1509 QSNAKEPMHSSENQLGESSS--LKPKRRKAQEGKNNATDWDQLRKQVQANGLKKERSKDT 1566
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
MDSLDYEA+R ANV EIS IKERGMNNMLAER+KDFLNRLVR+H SIDLEWLRDVPPDK
Sbjct: 1567 MDSLDYEAMRNANVNEISNTIKERGMNNMLAERIKDFLNRLVRDHESIDLEWLRDVPPDK 1626
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP PESLQLHLLE
Sbjct: 1627 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPPPESLQLHLLE 1686
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
LYP+LESIQKYLWPRLCKLDQ TLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFA
Sbjct: 1687 LYPILESIQKYLWPRLCKLDQYTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAG 1746
Query: 609 AFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPI 668
AFASAR ALPGPEE+SI SST P ++E NP+ +N +PLP P +L +V +G EPI
Sbjct: 1747 AFASARFALPGPEERSITSSTAPMISETNPTRAVNQIPLPPPVH-NLLKVGPNVGNNEPI 1805
Query: 669 IEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMS 728
IEEP TPE E E +ESD EDA Y+DPDEIPTIKLNIEEFT NLQ YMQ ME QE D+S
Sbjct: 1806 IEEPTTPEPEHAEGSESDTEDACYDDPDEIPTIKLNIEEFTANLQHYMQGNMEPQEGDLS 1865
Query: 729 KALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWT 788
KALVALNP+AASIP PKLKNVSRLRTEH VYELPD HPLL+ M++REPDDPSPYLLAIWT
Sbjct: 1866 KALVALNPNAASIPTPKLKNVSRLRTEHCVYELPDKHPLLKQMEKREPDDPSPYLLAIWT 1925
Query: 789 PGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFP 848
PGETANSIQ PE C S+E G+LC+EKTCF+CNS+RE N++TVRGT+LIPCRTAMRGSFP
Sbjct: 1926 PGETANSIQPPEQSCGSQEPGRLCNEKTCFACNSVREANTETVRGTILIPCRTAMRGSFP 1985
Query: 849 LNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFW 908
LNGTYFQVNEVFADHDSSLNP+DVPREW+WNLPRR VYFGTSVSSIFKGLSTEGIQ+CFW
Sbjct: 1986 LNGTYFQVNEVFADHDSSLNPVDVPREWIWNLPRRTVYFGTSVSSIFKGLSTEGIQYCFW 2045
Query: 909 KG 910
KG
Sbjct: 2046 KG 2047
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1736
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/934 (57%), Positives = 631/934 (67%), Gaps = 53/934 (5%)
Query: 1 MSLAARFPLKS--NKRTCNIDGTNILVEEPEVCIC-ANESIQWH-ELLRHPGSSQSSITP 56
MSLAARFP+KS N RT T+I+ E C+ ESI+WH + L P P
Sbjct: 795 MSLAARFPVKSASNLRTQGEVETSIVANESAACVLYPAESIRWHVQELSVPRFEM----P 850
Query: 57 HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
HQ SG K E G +EEE+ISSQDS STI Q G RSCSGSNSEA
Sbjct: 851 QTSINHQNQIANSGTEKI-FTELGGQIVEEEVISSQDSFDSTITQGTAGARSCSGSNSEA 909
Query: 117 EDSPPGCKLDNGSANF------QQVGNATLFQDFYSCINDSSLFQE-GYHRFKQAEDGGN 169
E+ P ++ S ++ +Q+ Q +S +N SS+ E H+ Q DG
Sbjct: 910 EE--PIVSYNSSSTHYSNFTDIKQMETTATIQKSFSDLNRSSVSDEVSEHKHWQLPDGKQ 967
Query: 170 FQQESGLESIDNLGSSLTFTQLLNF-NSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNG 228
S IDNL L+N N P+ S+ + H+T +LE EG E ++
Sbjct: 968 GSLTSEWNEIDNLSGHSLINFLVNIENQPKQVPDAPSNNQLHITPDCGVLEVEGREAFSE 1027
Query: 229 E-CSSWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKMLSASPYV 281
E SS PSI S S KN ++ R Q+ + E VQ T S S
Sbjct: 1028 ESTSSGPSIVSGCSTEKNMTFHRLNIGALEQRLDKTSAEDNVQARSHETTRMEHSES--- 1084
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q RS +Y+ T ES+S+ D E++ S
Sbjct: 1085 VSEHSVHLQGNGIQFRSHCEYNLHGKYEPCERNNTSPVESVSVTNPPPELDTPAEKSAVS 1144
Query: 342 GSM-LAEKTRNL----GDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKR 396
+ + T L G+ I+ +N E +S+ Q ++E N + SK+K+R
Sbjct: 1145 NVVHVHAHTEKLLPGKGNLINFSNN-------EAHSLSQA------HNEGNISPSKAKRR 1191
Query: 397 KADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNN 456
K + EKK +DW+SLRK+V+ N +E+ +D MDS+DYEA+R A+V+EIS AIKERGMNN
Sbjct: 1192 KVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADVREISNAIKERGMNN 1251
Query: 457 MLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
MLAER+K+FLNRLV +HGSIDLEWLRDVPPDKAKDYLLS+RGLGLKSVECVRLLTLHHLA
Sbjct: 1252 MLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLKSVECVRLLTLHHLA 1311
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 576
FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH
Sbjct: 1312 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 1371
Query: 577 YQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAER 636
YQLITFGKVFCTKSKPNCNACPMRGEC+HFASAFASARLALP P+EK IV+ST P E+
Sbjct: 1372 YQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDEKGIVASTNPMSTEK 1431
Query: 637 NPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPD 696
P +V NP+P+ PE S+ AE KCEPI+E PATPE E EITESDIEDAFYEDPD
Sbjct: 1432 QPPIVTNPLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPNEITESDIEDAFYEDPD 1491
Query: 697 EIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEH 756
EIPTIKL++EEF LQ Y + E DMSKALVALNP+AA IP PKLKNVSRLRTEH
Sbjct: 1492 EIPTIKLSMEEFKTTLQHY------IPEGDMSKALVALNPEAAFIPTPKLKNVSRLRTEH 1545
Query: 757 QVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKT 816
QVYELPDSHPLL MDRREPDDPSPYLLAIWTPGETANSIQ PE C S++ +LC+E T
Sbjct: 1546 QVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPEQSCGSQDPNRLCNEIT 1605
Query: 817 CFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREW 876
CF+CNS RE NSQTVRGTLL+PCRTAMRGSFPLNGTYFQVNE+FADH+SS+ PIDVPR+W
Sbjct: 1606 CFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMFADHESSMKPIDVPRKW 1665
Query: 877 LWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
LWNLPRR VYFGTSVS+IFKGL TE IQ CFW+G
Sbjct: 1666 LWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG 1699
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1679
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/934 (57%), Positives = 631/934 (67%), Gaps = 53/934 (5%)
Query: 1 MSLAARFPLKS--NKRTCNIDGTNILVEEPEVCIC-ANESIQWH-ELLRHPGSSQSSITP 56
MSLAARFP+KS N RT T+I+ E C+ ESI+WH + L P P
Sbjct: 738 MSLAARFPVKSASNLRTQGEVETSIVANESAACVLYPAESIRWHVQELSVPRFEM----P 793
Query: 57 HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
HQ SG K E G +EEE+ISSQDS STI Q G RSCSGSNSEA
Sbjct: 794 QTSINHQNQIANSGTEKI-FTELGGQIVEEEVISSQDSFDSTITQGTAGARSCSGSNSEA 852
Query: 117 EDSPPGCKLDNGSANF------QQVGNATLFQDFYSCINDSSLFQE-GYHRFKQAEDGGN 169
E+ P ++ S ++ +Q+ Q +S +N SS+ E H+ Q DG
Sbjct: 853 EE--PIVSYNSSSTHYSNFTDIKQMETTATIQKSFSDLNRSSVSDEVSEHKHWQLPDGKQ 910
Query: 170 FQQESGLESIDNLGSSLTFTQLLNF-NSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNG 228
S IDNL L+N N P+ S+ + H+T +LE EG E ++
Sbjct: 911 GSLTSEWNEIDNLSGHSLINFLVNIENQPKQVPDAPSNNQLHITPDCGVLEVEGREAFSE 970
Query: 229 E-CSSWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKMLSASPYV 281
E SS PSI S S KN ++ R Q+ + E VQ T S S
Sbjct: 971 ESTSSGPSIVSGCSTEKNMTFHRLNIGALEQRLDKTSAEDNVQARSHETTRMEHSES--- 1027
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q RS +Y+ T ES+S+ D E++ S
Sbjct: 1028 VSEHSVHLQGNGIQFRSHCEYNLHGKYEPCERNNTSPVESVSVTNPPPELDTPAEKSAVS 1087
Query: 342 GSM-LAEKTRNL----GDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKR 396
+ + T L G+ I+ +N E +S+ Q ++E N + SK+K+R
Sbjct: 1088 NVVHVHAHTEKLLPGKGNLINFSNN-------EAHSLSQA------HNEGNISPSKAKRR 1134
Query: 397 KADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNN 456
K + EKK +DW+SLRK+V+ N +E+ +D MDS+DYEA+R A+V+EIS AIKERGMNN
Sbjct: 1135 KVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADVREISNAIKERGMNN 1194
Query: 457 MLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
MLAER+K+FLNRLV +HGSIDLEWLRDVPPDKAKDYLLS+RGLGLKSVECVRLLTLHHLA
Sbjct: 1195 MLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLKSVECVRLLTLHHLA 1254
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 576
FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH
Sbjct: 1255 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 1314
Query: 577 YQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAER 636
YQLITFGKVFCTKSKPNCNACPMRGEC+HFASAFASARLALP P+EK IV+ST P E+
Sbjct: 1315 YQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDEKGIVASTNPMSTEK 1374
Query: 637 NPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPD 696
P +V NP+P+ PE S+ AE KCEPI+E PATPE E EITESDIEDAFYEDPD
Sbjct: 1375 QPPIVTNPLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPNEITESDIEDAFYEDPD 1434
Query: 697 EIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEH 756
EIPTIKL++EEF LQ Y + E DMSKALVALNP+AA IP PKLKNVSRLRTEH
Sbjct: 1435 EIPTIKLSMEEFKTTLQHY------IPEGDMSKALVALNPEAAFIPTPKLKNVSRLRTEH 1488
Query: 757 QVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKT 816
QVYELPDSHPLL MDRREPDDPSPYLLAIWTPGETANSIQ PE C S++ +LC+E T
Sbjct: 1489 QVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPEQSCGSQDPNRLCNEIT 1548
Query: 817 CFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREW 876
CF+CNS RE NSQTVRGTLL+PCRTAMRGSFPLNGTYFQVNE+FADH+SS+ PIDVPR+W
Sbjct: 1549 CFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMFADHESSMKPIDVPRKW 1608
Query: 877 LWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
LWNLPRR VYFGTSVS+IFKGL TE IQ CFW+G
Sbjct: 1609 LWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRG 1642
>gi|297806437|ref|XP_002871102.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
gi|297316939|gb|EFH47361.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
Length = 1997
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/930 (55%), Positives = 635/930 (68%), Gaps = 36/930 (3%)
Query: 1 MSLAARFPLKSNK-RTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP KSN R + +++VE+PE CI NE W E +++P + S
Sbjct: 1051 MSLAARFPPKSNSSREDERNVRSVVVEDPEGCILNLNEIPSWQENVQNPSDMEVSGVDSG 1110
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E QR SG+ + + E LEEE++SSQDS I QS G + SC S S+AE
Sbjct: 1111 SKEQQRDCSNSGIERFNFLEKSSQNLEEEVLSSQDSFDPAIFQSCGRVGSCLCSKSDAEF 1170
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
S C K +GS+ Q G+ L + N+ L +G ++ E Q++ L
Sbjct: 1171 STTRCETKTVSGSSQSVQTGSPNLSDEICLQGNERPLLYDGSGDVQKQETTNVAQEKPDL 1230
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQ--VGFSSDYEPHMTSYSELLEAEGSEIYN-GECSSW 233
+ I N SL+F Q N + Q + SS YE +++ E + G W
Sbjct: 1231 DKIMNWKDSLSFGQPSNDTNWQKKGPTNPSSSYEQSTIQQPHVIDIEDFGMQGEGLGYPW 1290
Query: 234 PSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPT 287
SIS KN++ R P E G+ + STP +ML +
Sbjct: 1291 LSISPRVDSGKNKNVPRRFFRQGGSVPREFTGQIIS-----STPHEMLGMGLFASSSALQ 1345
Query: 288 MQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAE 347
+ Q + + Q + H ++ F + ++ +E+ + +QN+ G + +
Sbjct: 1346 VHQDDTQHNQ------QDEMNKASHLQKAFM-DLLNSSEECLTRQSSTKQNITDGCLPRD 1398
Query: 348 KTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRK-ADGEKKNAI 406
+T G D N N L+E NS + +A + Y+ETN I + K ADG K +
Sbjct: 1399 RTAENGVDPLSKNTSLQNILVESNSSNKEQTAVE-YNETNATIVREMKGTLADGRKPTS- 1456
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+SLRK+V+ N G++ERS+D MDS+DYEA+R A++ EIS+AIKERGMNNMLA R+KDFL
Sbjct: 1457 QWDSLRKDVEVNEGRKERSKDSMDSIDYEAIRRASISEISDAIKERGMNNMLAVRIKDFL 1516
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R V++HG IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDTNVGRI
Sbjct: 1517 ERTVKDHGGIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRI 1576
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
AVRLGWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQ TLYELHYQLITFGKVF
Sbjct: 1577 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQPTLYELHYQLITFGKVF 1636
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLAL--PGPEEKSIVSSTMPTMAERNPSVVINP 644
CTKS+PNCNACPMRGECRHFASA+ASARLAL P P+E+S+ S+T+P + P V I
Sbjct: 1637 CTKSRPNCNACPMRGECRHFASAYASARLALPAPAPDERSLTSATIPVPPKSFPPVAIPM 1696
Query: 645 MPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPT 700
+ LP P + +LA RE CEPIIEEPA+PEQECTEITESDIEDA+Y EDPDEIPT
Sbjct: 1697 IELPLPLEKALARGAPSNRE--NCEPIIEEPASPEQECTEITESDIEDAYYNEDPDEIPT 1754
Query: 701 IKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYE 760
IKLNIE+F + L+ +M+ MELQE DMSKALVALNP A SIP PKLKN+SRLRTEHQVY+
Sbjct: 1755 IKLNIEQFGMTLREHMERNMELQEGDMSKALVALNPTATSIPTPKLKNISRLRTEHQVYQ 1814
Query: 761 LPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSC 820
LPDSHPLL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC C
Sbjct: 1815 LPDSHPLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSEC 1874
Query: 821 NSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNL 880
N++RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLNPIDVPR+W+W+L
Sbjct: 1875 NNVREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLNPIDVPRDWIWDL 1934
Query: 881 PRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1935 PRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1964
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera]
Length = 1621
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/514 (84%), Positives = 468/514 (91%)
Query: 397 KADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNN 456
K +G KK A DW+SLRK+VQ N K+ERS+D MDSLDYEA+RCA+V ISEAIKERGMNN
Sbjct: 1072 KVEGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNN 1131
Query: 457 MLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
MLAER+KDFLNRLVREHGSIDLEWLRD PPDKAKDYLLSIRGLGLKSVECVRLLTLH LA
Sbjct: 1132 MLAERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLA 1191
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 576
FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELH
Sbjct: 1192 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELH 1251
Query: 577 YQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAER 636
YQLITFGKVFCTK KPNCNACPMRGECRHFASAFASARLALP PEEKSIVSST P++A+R
Sbjct: 1252 YQLITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADR 1311
Query: 637 NPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPD 696
NP+ INP+PLPS E + L + ++ KCEPIIE PATPE +C E ESDIEDAFYEDPD
Sbjct: 1312 NPTAFINPIPLPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYEDPD 1371
Query: 697 EIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEH 756
EIPTIKLN EEFT+NLQ+YMQE MELQE DMSKALVAL+P A SIP PKLKNVSRLRTEH
Sbjct: 1372 EIPTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEH 1431
Query: 757 QVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKT 816
QVYELPDSHPLL+GMD REPDDPSPYLLAIWTPGETANS Q PE RC S+E GKLC+EKT
Sbjct: 1432 QVYELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKT 1491
Query: 817 CFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREW 876
CFSCNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS+NPIDVPR W
Sbjct: 1492 CFSCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAW 1551
Query: 877 LWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
+WNLPRR VYFGTSV+SIF+GL TEGIQ+CFW+G
Sbjct: 1552 IWNLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRG 1585
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 1 MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRH 46
MSL +RFPL +SNK T + +ILVEEPEVCI +++I+WHE + H
Sbjct: 917 MSLVSRFPLHPESNK-TSYSNEASILVEEPEVCIMNPDDTIKWHEKVSH 964
>gi|30680560|ref|NP_196076.2| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|332003377|gb|AED90760.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1729
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/933 (55%), Positives = 628/933 (67%), Gaps = 48/933 (5%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 789 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 848
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 849 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 908
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 909 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 968
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
E N S+ F Q P+N + SS YE T +L+ E + G
Sbjct: 969 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1022
Query: 232 SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
SW SIS + KN++ R P E G+ + STP ++ LS S
Sbjct: 1023 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1077
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q + H ++TF + ++ +E+ + +QN+
Sbjct: 1078 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1126
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G + ++T D N N L+E NS + +A + Y ETN I + K
Sbjct: 1127 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1185
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
KK W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1186 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1245
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1246 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1305
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1306 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1365
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P E P V
Sbjct: 1366 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVA 1425
Query: 642 INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
I + LP P + SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1426 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1483
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
IPTIKLNIE+F + L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQ
Sbjct: 1484 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1543
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC
Sbjct: 1544 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1603
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1604 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1663
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1664 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1696
>gi|21743571|gb|AAM77215.1| DEMETER protein [Arabidopsis thaliana]
Length = 1729
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/933 (55%), Positives = 628/933 (67%), Gaps = 48/933 (5%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 789 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 848
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 849 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 908
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 909 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 968
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
E N S+ F Q P+N + SS YE T +L+ E + G
Sbjct: 969 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1022
Query: 232 SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
SW SIS + KN++ R P E G+ + STP ++ LS S
Sbjct: 1023 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1077
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q + H ++TF + ++ +E+ + +QN+
Sbjct: 1078 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1126
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G + ++T D N N L+E NS + +A + Y ETN I + K
Sbjct: 1127 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1185
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
KK W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1186 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1245
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1246 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1305
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1306 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1365
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P E P V
Sbjct: 1366 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESFPPVA 1425
Query: 642 INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
I + LP P + SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1426 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1483
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
IPTIKLNIE+F + L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQ
Sbjct: 1484 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1543
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC
Sbjct: 1544 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1603
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1604 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1663
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1664 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1696
>gi|145334291|ref|NP_001078527.1| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|108935833|sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA
glycosylase-related protein DME
gi|84782664|gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana]
gi|332003378|gb|AED90761.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1987
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/933 (55%), Positives = 628/933 (67%), Gaps = 48/933 (5%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
E N S+ F Q P+N + SS YE T +L+ E + G
Sbjct: 1227 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1280
Query: 232 SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
SW SIS + KN++ R P E G+ + STP ++ LS S
Sbjct: 1281 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1335
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q + H ++TF + ++ +E+ + +QN+
Sbjct: 1336 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1384
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G + ++T D N N L+E NS + +A + Y ETN I + K
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1443
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
KK W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1444 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1503
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1504 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1563
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1564 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1623
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P E P V
Sbjct: 1624 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVA 1683
Query: 642 INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
I + LP P + SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1684 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1741
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
IPTIKLNIE+F + L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQ
Sbjct: 1742 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1801
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC
Sbjct: 1802 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1861
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1862 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1921
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1922 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1954
>gi|225440992|ref|XP_002277401.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 1942
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/961 (54%), Positives = 621/961 (64%), Gaps = 83/961 (8%)
Query: 1 MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANE-SIQWHELLRHPG-SSQSSITPHE 58
MSLAA FP K N R T ILVEEPEVC E ++ W+E + + QSS+T H
Sbjct: 976 MSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNEKMSNQAVCDQSSMTLHH 1035
Query: 59 PTE--------------------------HQRVREMSGVGKTSLPEPHGIGLE------- 85
E ++MS + IG E
Sbjct: 1036 TEEAVNSNGSYGNSRGTVGTVDISKDKMLDSTGKKMSNKSSVNGTTTQMIGTELACFIGG 1095
Query: 86 -----EEIISSQDSLSSTILQSNGGIRSCSGSNSEAED-SPPGCKLDN--GSANFQ---Q 134
++ SSQ+SL +I Q+ I SCS SNSE ED P G L+N GS +F Q
Sbjct: 1096 DRTAADDAASSQNSLDFSIAQTAEKIGSCSESNSEVEDIMPTGYGLNNFDGSTSFVGLLQ 1155
Query: 135 VGNATLFQDFY--SCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL 192
+ +T + + S IN + + G ++ ++ + + SSL T +
Sbjct: 1156 MAESTRLHEVFCRSNINATCGANPKDVNYHSESMSGYNKRSQNMDGLADCRSSLGVTIIP 1215
Query: 193 NFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQ 252
SS+Y H+ S +LE EG E+ +GE S IS + +S A+
Sbjct: 1216 -----------SSNYHLHLNPNSGVLEVEGFEM-SGETRS-SEISKDQKCVSEQSGLTAE 1262
Query: 253 QPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNAS--QTRSPPKYDQSCCDIY 310
+ E + ++ + P ++S +Q N +++S P D
Sbjct: 1263 SDNQAKDEKKLTESIQAGP----TSSCENTFSDNNLQGENNKIIESQSSPVGDPKNV--- 1315
Query: 311 QHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEP 370
ES+ Q + + + QN+ + S A + S + D K E
Sbjct: 1316 --------VESVG---QEQISRMQQSQNLMNISGKALDVIDCPSAFSNQTHIEDRK-SET 1363
Query: 371 NSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMD 430
E LS+ K +E + SK+KK KA E+KN + W++LRKE Q N K+ER+ + MD
Sbjct: 1364 GVKEHGLSSSKASNEIGVDTSKAKKGKARREEKNTLHWDNLRKEAQVNGRKRERTVNTMD 1423
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
SLD+EA+RC++V EI+ IKERGMNNMLAER+KDFLNRLVR+HGSIDLEWLRDVPPDKAK
Sbjct: 1424 SLDWEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAK 1483
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY
Sbjct: 1484 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 1543
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
PVLESIQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAF
Sbjct: 1544 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 1603
Query: 611 ASARLALPGPEEKSIVSSTMPTMAERNPSVVIN-PMPLPSPEKSSLAEVRREIGKCEPII 669
ASARLAL GPEE+SIVS+ + NP V IN P + +E I CEPI+
Sbjct: 1604 ASARLALTGPEERSIVSTNANESMDGNPDVTINPLPLPPPLPQKQSSEANPGINNCEPIV 1663
Query: 670 EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSK 729
E PATPEQE +I ESDIED YEDPDEIPTIKLNIEEFT NLQ+YMQ MELQE DMSK
Sbjct: 1664 EVPATPEQEHPQILESDIEDTLYEDPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSK 1723
Query: 730 ALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTP 789
ALVAL P+ ASIP PKLKNVSRLRTEH VYELPDSHPLLEG+D+REPDDP YLLAIWTP
Sbjct: 1724 ALVALTPEVASIPMPKLKNVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCSYLLAIWTP 1783
Query: 790 GETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPL 849
GETANSIQ PE C S+ESG LCDEKTCFSCNS+RE NSQTVRGTLLIPCRTAMRGSFPL
Sbjct: 1784 GETANSIQPPERTCSSQESGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPL 1843
Query: 850 NGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWK 909
NGTYFQVNEVFADHDSSLNPIDVPR W+WNLPRR VYFGTS+ +IFKGLSTE IQ+CFW+
Sbjct: 1844 NGTYFQVNEVFADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEDIQYCFWR 1903
Query: 910 G 910
G
Sbjct: 1904 G 1904
>gi|356574657|ref|XP_003555462.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1851
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/937 (55%), Positives = 634/937 (67%), Gaps = 44/937 (4%)
Query: 1 MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC--ANESIQWHE-LLRHPGSSQSSIT 55
MSLA+RFPL KS+K++ ++D TN L++E +CI A+ + L P T
Sbjct: 885 MSLASRFPLQSKSSKKSYDVD-TNTLLKEAGLCIVNPADTITPYGSGTLNQPTYHLCFET 943
Query: 56 PHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSE 115
PH E R E S K SL +P+ EEE +S QDSL S+I Q R+ S S S
Sbjct: 944 PHHARELWRDSETSR-PKGSLIKPNNQSSEEEFLSPQDSLDSSITQD---ARNRSSSGSN 999
Query: 116 AEDSPPGCKLDNGSANFQ------QVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGN 169
+E C+ ++ F QVG T+FQ+FY+ IN SLF+E + +DG
Sbjct: 1000 SESEGLDCRCEHRETQFLTAINSLQVGKTTMFQEFYNSINGVSLFEE------RNKDGQL 1053
Query: 170 FQQES-------GLESIDNLGSSLTFTQLLNFNSPQNQVGF--SSDYEPHMTSYSELLEA 220
+E G S N+ S+ F+ NF P Q+ S+DY + YS+
Sbjct: 1054 HPEEYVKQNCSIGRNSSPNICSA--FSHPNNFAYPPKQLPVVPSTDYRLY---YSDTQGL 1108
Query: 221 EGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNG-LSTPEKMLSASP 279
+ ++ G+ S ++S S N S R + D M NG L +PE + + P
Sbjct: 1109 KTFQMNGGKFSWTETVSVHSELQDNNSGNRKVGDSADKPTEMQYANGTLGSPE-IPTIDP 1167
Query: 280 YVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQM---HHTDLAKE 336
Y L K + + SQ S Y+Q + + +++ + ES + H D ++
Sbjct: 1168 YGPLSKYLVLPHDTSQFGSHTNYNQPSPNHHLVGQKSLESESREFTNSLNTSHILDRCQD 1227
Query: 337 QNVPSGSMLAEKTRNL-GDDISVANK--LSDNKLIEPNSVEQVLSAHKVYDETNPNISKS 393
V + + L + IS AN S+N E N ++QV S + + ++ +SK
Sbjct: 1228 DVVKDSGNIPKHAEGLDSEKISAANSQGCSENSRAESNPLKQVYSPNSIDKKSKIKVSKE 1287
Query: 394 KKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG 453
+K K + EKK+A DW+ LRKEVQ N ++ERS D MDSLDYEA+RCA+VKEIS+ IKERG
Sbjct: 1288 RKAKPETEKKHASDWDKLRKEVQINRIEKERSTDTMDSLDYEAIRCASVKEISKTIKERG 1347
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH 513
MNNMLAER+K+FLNRLV EHGSIDLEWLR VP DKAKDYLLS RGLGLKSVECVRLLTLH
Sbjct: 1348 MNNMLAERIKEFLNRLVTEHGSIDLEWLRHVPQDKAKDYLLSFRGLGLKSVECVRLLTLH 1407
Query: 514 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 573
H+AFPVDTNVGRIAVRLGWVPLQPLPE+LQLHLLELYPVLE++QKYLWPRLCKLDQRTLY
Sbjct: 1408 HIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLETVQKYLWPRLCKLDQRTLY 1467
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
ELHYQ+ITFGKVFCTK KPNCNACPMR ECRHFASAFASARLALPGPEEK IVS +P
Sbjct: 1468 ELHYQMITFGKVFCTKKKPNCNACPMRAECRHFASAFASARLALPGPEEKRIVSMHVPIA 1527
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYE 693
ERN V NPM LP E + +V E +CEPIIEEPATPE+E E ESD+ED
Sbjct: 1528 TERNYFVNENPMVLPLLENNLSRQVNPESWQCEPIIEEPATPEREWKEAEESDMEDFLKV 1587
Query: 694 DPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLR 753
D DEI +I LN +E TVN+Q+++QE E E DMSKALVALNP++ASIP PKLKNVSRLR
Sbjct: 1588 DSDEILSIGLNAKESTVNVQNHLQEYKEHNEGDMSKALVALNPESASIPTPKLKNVSRLR 1647
Query: 754 TEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCD 813
TEHQVYELPDSHPLLE MD+REPDDPSPYLLAIWTPGET NS++ PE RC S++S LC+
Sbjct: 1648 TEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGETPNSVEPPERRCESQDSANLCN 1707
Query: 814 EKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVP 873
+ TCFSCNS+RE NSQTVRGT+LIPCRTA RGSFPLNGTYFQVNE+FADH SS+ PID+P
Sbjct: 1708 DSTCFSCNSIREANSQTVRGTILIPCRTATRGSFPLNGTYFQVNELFADHASSVQPIDIP 1767
Query: 874 REWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
REW+WNLPRR YFGTSVSSIFKGLST+ IQ CFW+G
Sbjct: 1768 REWIWNLPRRTAYFGTSVSSIFKGLSTQQIQHCFWRG 1804
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum]
Length = 1758
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/999 (52%), Positives = 644/999 (64%), Gaps = 141/999 (14%)
Query: 1 MSLAARFPLKSNKR--------TCNIDGTNILVEEPEVCICANESIQWH-ELLRHPGSSQ 51
MSLAARFP+KS + T ++G V EPE ESI+W + P Q
Sbjct: 772 MSLAARFPIKSKSKDKLYHQEGTSLVNGEEFYVLEPE------ESIKWDAKTAIQPVGDQ 825
Query: 52 SSIT--PHEPTEHQRV---REMSGVGK---TSLPEPH-------GIGLE----------- 85
SS+T ++ +E + V E+SG +S+ EP G GL
Sbjct: 826 SSMTVDGYQDSEEKEVANSEELSGSSTATVSSINEPKCNLLNSSGSGLSTYCDSTANRLN 885
Query: 86 -----------------EEIISSQDSLSST-------ILQSNGGIRSCSGSNSEAEDSP- 120
+++SSQ+S+ S+ ++Q+ SCS NSE D
Sbjct: 886 METIRGKTDCFKGDEETNDVLSSQNSVVSSENSGDFSLVQTAERTGSCSEGNSEGADHTK 945
Query: 121 -PGCKLDNGSANF----QQVGNATLFQDFYSCINDSSLFQEGYHRFK-QAEDGGNFQQES 174
P + NGS +F Q VG+A L + S N S + K Q + N Q+E+
Sbjct: 946 RPIFNILNGSTSFVQLLQMVGSARL-HEVQSHQNMSP-----NEKLKCQNKPIPNHQREN 999
Query: 175 GLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWP 234
DN +FT+ + S++Y P++T L +E EI + E
Sbjct: 1000 ----CDNSDGPKSFTR--------EDLMPSANYHPYLT-----LNSEVREIGHFETLKEE 1042
Query: 235 SISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNAS 294
+ SE+SK +ES + P + Q++ T ++ + ++ + + +S
Sbjct: 1043 TRVSEASKTIDESMIKRLSP-------LTQESASRTMDQNDKTRSVQVAQQSSFENFQSS 1095
Query: 295 QTRSPPKYDQSCCDIYQHERRTFQCESISIA---EQMHHTDLAKEQNVPSGSMLAEKTRN 351
P + S C + ES + A E + H ++K +E+T
Sbjct: 1096 TYTIPVEMTVSHCPKGLLQDTINLVESPAEAQNKEMLRHVSMSKH---------SEETL- 1145
Query: 352 LGDDISVANKLSDN------KLIEPNSVEQVLSAHKVYDETNPNIS--KSKKRKADGEKK 403
DI+ ++ DN K+ E N S++K E N + KS+ RK EKK
Sbjct: 1146 ---DITESSTAFDNQRNPQQKMQESNLYTHDSSSNK---ELNSMVGELKSEGRKVKKEKK 1199
Query: 404 NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMK 463
+ DW+SLRK+ + N K+E++ MDSLD+EA+RCA V EI+E IKERGMNN+LA+R+K
Sbjct: 1200 DDFDWDSLRKQTEVNGRKREKTERTMDSLDWEAVRCAEVHEIAETIKERGMNNVLAQRIK 1259
Query: 464 DFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
DFLNRLVR+HGSIDLEWLRDVPPDKAK+YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV
Sbjct: 1260 DFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 1319
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583
GRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ+ITFG
Sbjct: 1320 GRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFG 1379
Query: 584 KVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVIN 643
KVFCTK KPNCNACPMRGECRHFASAFASARLALPGPEEKSIVS+T ++RNP+V+I+
Sbjct: 1380 KVFCTKGKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENGTSDRNPAVIID 1439
Query: 644 PMPLPSPEKSSLAEVRRE------------IGKCEPIIEEPATPEQECTEITESDIEDAF 691
+ LP P+ + L + + + KC+PIIEEPA+PE ECT++ E+DIED F
Sbjct: 1440 QLALPLPQSNELLDRNYQSEANQHLQAASTVNKCDPIIEEPASPEPECTQVAENDIEDMF 1499
Query: 692 YEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSR 751
EDPDEIPTIKLN+EEFT LQ+YMQ +ELQE DMSKALVAL +AASIP P+LKNV+R
Sbjct: 1500 SEDPDEIPTIKLNMEEFTQTLQNYMQNNIELQEGDMSKALVALTAEAASIPTPRLKNVNR 1559
Query: 752 LRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKL 811
LRTEHQVYELPDSHPLL +D+REPDDP YLLAIWTPGETANSIQ PE RC S+E GKL
Sbjct: 1560 LRTEHQVYELPDSHPLLNELDKREPDDPCKYLLAIWTPGETANSIQQPERRCNSQEHGKL 1619
Query: 812 CDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPID 871
CD++TCFSCNS++E SQ VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPI
Sbjct: 1620 CDDETCFSCNSIQEAESQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIA 1679
Query: 872 VPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VPREWLWNLPRRMVYFGTS+ SIFKGL+TEGIQ CFW+G
Sbjct: 1680 VPREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWRG 1718
>gi|356533903|ref|XP_003535497.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1915
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/938 (54%), Positives = 629/938 (67%), Gaps = 47/938 (5%)
Query: 1 MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC--ANESIQW-HELLRHPGSSQSSIT 55
MSLA+RFPL KS+K+T ++D TN L +E + I A+ + + L P T
Sbjct: 962 MSLASRFPLQSKSSKKTYDVD-TNTLFKEAGLNILNPADTITSYGYGTLNQPTYHLGFET 1020
Query: 56 PHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSE 115
PH E R E S K SL + + EE +S QDSL S+I Q R+ S S
Sbjct: 1021 PHHAKELWRDCETSRT-KGSLIKLNNQSSVEEFLSPQDSLDSSITQD---ARNRYSSGSN 1076
Query: 116 AEDSPPGCKLDN------GSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGN 169
+E C+ ++ S N QVG T+FQ+FY+ +N SLF+E ++ Q
Sbjct: 1077 SESEGLDCRCEHRKTQFLTSTNSLQVGKTTMFQEFYNSVNGVSLFEE-RNKDGQLHPAEQ 1135
Query: 170 FQQES--GLESIDNLGSSLTFTQLLNFNSPQNQVGF--SSDYEPHMTSYSELLEAEGSEI 225
+Q G S N+ S+ F+ NF P Q+ S+DY + + L +
Sbjct: 1136 VKQNCSIGRNSSPNVCSA--FSHPSNFAYPPKQLPVVPSTDYGLYYSDTQGLKTIQ---- 1189
Query: 226 YNGECSSWP-SISSESSKAKNESYARAQQPAEDIGETMVQQNG-LSTPEKMLSASPYVLL 283
NGE SW ++S S N S R + + D + NG L +PE + + PY L
Sbjct: 1190 MNGEKFSWTETVSVHSEFQDNNSGNRKEGDSADKPTEIQYTNGTLGSPE-IPTIDPYEPL 1248
Query: 284 KKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTD-LAKEQ----- 337
K + + SQ S Y Q + + +++ + ES ++ + L + Q
Sbjct: 1249 SKYLVLPQDTSQFGSHTNYSQPSLNHHIVGQKSLESESREFTNSLNASRILGRYQDGVVN 1308
Query: 338 ---NVPSGSMLAEKTRNLGDDISVANK--LSDNKLIEPNSVEQVLSAHKVYDETNPNISK 392
N+P + + + IS AN S+N E N +QV + + ++ +SK
Sbjct: 1309 DSYNIPKDAEGLDSKK-----ISAANSQGCSENSRAESNPQKQVYYPNPINKKSQIKVSK 1363
Query: 393 SKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKER 452
++K K + EKK A DW+ LRKEVQ N ++ERS D MDSLDYEA+RCA+VKEIS+ IKER
Sbjct: 1364 ARKEKPETEKKLASDWDKLRKEVQVNGTEKERSMDTMDSLDYEAVRCASVKEISKTIKER 1423
Query: 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
GMNN+LAER+K+FL+RLV EHGSIDLEWLR VP DKAKD+LLS RGLGLKSVECVRLLTL
Sbjct: 1424 GMNNLLAERIKEFLDRLVTEHGSIDLEWLRHVPQDKAKDFLLSFRGLGLKSVECVRLLTL 1483
Query: 513 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 572
++AFPVDTNVGRIAVRLGWVPLQPLPE+LQLHLLELYPVLE++QKYLWPRLCKLDQRTL
Sbjct: 1484 QNIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLEAVQKYLWPRLCKLDQRTL 1543
Query: 573 YELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPT 632
YELHYQ+ITFGKVFCTK KP CNACPMR ECRHFASAFASARLALPGPEEK IVS +P
Sbjct: 1544 YELHYQMITFGKVFCTKKKPKCNACPMRAECRHFASAFASARLALPGPEEKHIVSMHVPI 1603
Query: 633 MAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFY 692
AERN V NPM LP E + +V + +CEPIIEEPATPE+E TE ESD+ED F
Sbjct: 1604 AAERNYFVNENPMVLPLLENNLSRQVSPQSWQCEPIIEEPATPEREWTEAEESDMEDFFK 1663
Query: 693 EDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRL 752
ED DEI +I LN ++ TVN+Q+Y+QE E E MSKALVALNP +ASIP PKLKNVSRL
Sbjct: 1664 EDSDEILSIDLNAKKSTVNVQNYLQEYNEHNEGCMSKALVALNPRSASIPTPKLKNVSRL 1723
Query: 753 RTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLC 812
RTEHQVYELPDSHPLLE MD+REPDDPSPYLLAIWTPGET NS++ PE RC S++S LC
Sbjct: 1724 RTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGETPNSVEPPERRCGSQDSA-LC 1782
Query: 813 DEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDV 872
++ TCFSCNS+RE NSQTVRGTLLIPCRTA RGSFPLNGTYFQVNE+FADH SS+ PID+
Sbjct: 1783 NDNTCFSCNSIREANSQTVRGTLLIPCRTATRGSFPLNGTYFQVNELFADHASSVQPIDI 1842
Query: 873 PREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PREW+WNLPRR VYFGTSVSSIFK LST+ IQ CFW+G
Sbjct: 1843 PREWIWNLPRRTVYFGTSVSSIFKDLSTQEIQHCFWRG 1880
>gi|297740062|emb|CBI30244.3| unnamed protein product [Vitis vinifera]
Length = 1470
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/549 (77%), Positives = 468/549 (85%), Gaps = 2/549 (0%)
Query: 364 DNKLIEPNSV-EQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQ 422
+NK+I+ V E LS+ K +E + SK+KK KA E+KN + W++LRKE Q N K+
Sbjct: 884 NNKIIDETGVKEHGLSSSKASNEIGVDTSKAKKGKARREEKNTLHWDNLRKEAQVNGRKR 943
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
ER+ + MDSLD+EA+RC++V EI+ IKERGMNNMLAER+KDFLNRLVR+HGSIDLEWLR
Sbjct: 944 ERTVNTMDSLDWEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLR 1003
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
DVPPDKAK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL
Sbjct: 1004 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 1063
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGE
Sbjct: 1064 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 1123
Query: 603 CRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVIN-PMPLPSPEKSSLAEVRRE 661
CRHFASAFASARLAL GPEE+SIVS+ + NP V IN P + +E
Sbjct: 1124 CRHFASAFASARLALTGPEERSIVSTNANESMDGNPDVTINPLPLPPPLPQKQSSEANPG 1183
Query: 662 IGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKME 721
I CEPI+E PATPEQE +I ESDIED YEDPDEIPTIKLNIEEFT NLQ+YMQ ME
Sbjct: 1184 INNCEPIVEVPATPEQEHPQILESDIEDTLYEDPDEIPTIKLNIEEFTHNLQNYMQRNME 1243
Query: 722 LQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSP 781
LQE DMSKALVAL P+ ASIP PKLKNVSRLRTEH VYELPDSHPLLEG+D+REPDDP
Sbjct: 1244 LQESDMSKALVALTPEVASIPMPKLKNVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCS 1303
Query: 782 YLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRT 841
YLLAIWTPGETANSIQ PE C S+ESG LCDEKTCFSCNS+RE NSQTVRGTLLIPCRT
Sbjct: 1304 YLLAIWTPGETANSIQPPERTCSSQESGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRT 1363
Query: 842 AMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTE 901
AMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPR W+WNLPRR VYFGTS+ +IFKGLSTE
Sbjct: 1364 AMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTE 1423
Query: 902 GIQFCFWKG 910
IQ+CFW+G
Sbjct: 1424 DIQYCFWRG 1432
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 47/136 (34%)
Query: 1 MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANE-SIQWHELLRHPGSSQSSITPHEP 59
MSLAA FP K N R T ILVEEPEVC E ++ W+E
Sbjct: 710 MSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNE----------------- 752
Query: 60 TEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED- 118
+ + + Q+ +I Q+ I SCS SNSE ED
Sbjct: 753 -----------------------KMSNQAVCDQN---FSIAQTAEKIGSCSESNSEVEDI 786
Query: 119 SPPGCKLDN--GSANF 132
P G L+N GS +F
Sbjct: 787 MPTGYGLNNFDGSTSF 802
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1881
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/958 (51%), Positives = 611/958 (63%), Gaps = 104/958 (10%)
Query: 1 MSLAARFPLKSNK--RTCNIDGTNILVEEPEVCICA-NESIQWH-ELLRHPGSSQSSITP 56
MSLAARFP S+ +T + + T ++V +P+V I ES +W +LL Q S T
Sbjct: 910 MSLAARFPKISSSMCKTHHAEDTRLVVNKPQVHIVEPEESTEWDVKLLNQSVYDQPSPTI 969
Query: 57 HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
+ EH R +E ++ G +IS D +SN + N +
Sbjct: 970 -DIVEHSREKEAFNSNES-------CGTTSSVISLTD-------ESNSRLSELPQKNIKE 1014
Query: 117 EDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
SP L SA+ ++ + + +ND Q ++ G+F +
Sbjct: 1015 HCSPMRSGL--LSASIEEGEEKSCYDGDRKELNDIVSSQGS---VISSQISGDFSNDQNP 1069
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLE-AEGSEIYNGECSSWPS 235
E I + S + ++L+ + N G + TS+S+LLE ++ Y S
Sbjct: 1070 EKIGSCSDSNSEVEVLSSTAKYNHFGSN-------TSFSKLLEMVSSTKFYADNSQKSES 1122
Query: 236 ISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQ 295
I + + + E + ++ Q S ++ + Y L P +
Sbjct: 1123 IENLRDAYDQHIHRQHNNTIESLKKSSATQG--SAEASIILSDEYTLKLAPNLGM----- 1175
Query: 296 TRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDD 355
D +C D ++ E T +D K+++ S + + +T G
Sbjct: 1176 ------LDVNCFDPFKTEAST--------------SDFLKKKDENSMNRSSLQTTEPGGQ 1215
Query: 356 ISVANKLSDNKLIEPN--SVEQVLSAHKVYDETNPNISKSKKRKAD-GEKKNAI------ 406
++ + S + P S Q S + +T + K R +D GE+KNA+
Sbjct: 1216 VATTHSQSIVSQVHPQEQSNHQQQSFFNISGQTQDLMQKG--RGSDLGEQKNAMRNGTNE 1273
Query: 407 ---------------------DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEI 445
DW+SLR E Q +GK+E++ + MDSLD++A+RCA+V EI
Sbjct: 1274 ISSAPIKFKSKEQEKEKKDDFDWDSLRIEAQAKAGKREKTDNTMDSLDWDAVRCADVSEI 1333
Query: 446 SEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVE 505
+E IKERGMNN LA+R+K+FLNRLV EHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKSVE
Sbjct: 1334 AETIKERGMNNRLADRIKNFLNRLVEEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVE 1393
Query: 506 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 565
CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC
Sbjct: 1394 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 1453
Query: 566 KLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSI 625
KLDQ TLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPE+KSI
Sbjct: 1454 KLDQETLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSI 1513
Query: 626 VSSTMPTMAERNPSVVINPMPLPSPEKSS------LAEVRR------EIGKCEPIIEEPA 673
VS+T ++ ++NPS +I+ + LP PE ++ L EV R EI C+PIIEEP
Sbjct: 1514 VSTTGNSVIDQNPSEIISQLHLPPPESTAQADDIQLTEVSRQLESKSEINICQPIIEEPT 1573
Query: 674 TPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVA 733
TPE EC +++++DIEDAFYED EIPTI LNIEEFT+NLQ+YMQEKMELQE +MSKALVA
Sbjct: 1574 TPEPECLQVSQTDIEDAFYEDLCEIPTINLNIEEFTMNLQNYMQEKMELQEAEMSKALVA 1633
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETA 793
LNP+AASIP PKLKNVSRLRTEH VYELPD+HPLL+G D REPDDP YLLAIWTPGETA
Sbjct: 1634 LNPEAASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETA 1693
Query: 794 NSIQLPESRCRSKES-GKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGT 852
NSIQ PES+C S+E G+LC+E CFSCNS RE NSQ VRGTLLIPCRTA RGSFPLNGT
Sbjct: 1694 NSIQPPESKCSSQEECGQLCNENECFSCNSFREANSQIVRGTLLIPCRTATRGSFPLNGT 1753
Query: 853 YFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
YFQVNEVFADHDSSLNPI VPR W+WNL RR VYFGTSV++IFKGL+T+ IQ CFW+G
Sbjct: 1754 YFQVNEVFADHDSSLNPISVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQEIQQCFWRG 1811
>gi|224113515|ref|XP_002316517.1| DNA glycosylase [Populus trichocarpa]
gi|222865557|gb|EEF02688.1| DNA glycosylase [Populus trichocarpa]
Length = 519
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/485 (85%), Positives = 445/485 (91%), Gaps = 5/485 (1%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
MDSLDYEA+R A VKEIS+AIKERGMNNMLAER+++FLNRLVREHGSIDLEWLRDVPPDK
Sbjct: 1 MDSLDYEAVRSARVKEISDAIKERGMNNMLAERIQEFLNRLVREHGSIDLEWLRDVPPDK 60
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE
Sbjct: 61 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 120
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
LYP+LESIQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKS+PNCNACPMR ECRHFAS
Sbjct: 121 LYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSRPNCNACPMRAECRHFAS 180
Query: 609 AFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPI 668
AFASARLALPGPEEK I +ST+P M ER+P + INPMPLP PE + +IG C PI
Sbjct: 181 AFASARLALPGPEEKGITTSTVPFMPERSPGIGINPMPLPPPEDNPHKRHGSDIGSCVPI 240
Query: 669 IEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMS 728
IEEPATP+QE TE+TE+DIED F EDPDEIPTIKLN+EEFT NLQ+YM +ELQE DMS
Sbjct: 241 IEEPATPDQENTELTETDIED-FGEDPDEIPTIKLNMEEFTENLQNYMHTNLELQEGDMS 299
Query: 729 KALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEG---MDRREPDDPSPYLLA 785
KALVALNP+ ASIP PKLKNVSRLRTEHQVYELPDSHPLLEG MDRREPDDPSPYLLA
Sbjct: 300 KALVALNPN-ASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGNLQMDRREPDDPSPYLLA 358
Query: 786 IWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRG 845
IWTPGETANSI+ P+ +C+S+E KLCDEKTCFSCNS+RE NSQTVRGTLLIPCRTAMRG
Sbjct: 359 IWTPGETANSIEPPDQQCQSREPNKLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRG 418
Query: 846 SFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQF 905
SFPLNGTYFQVNE+FADH+SSLNPIDVPR +WNLPRR+VYFGTSVSSIFKGLSTEGIQF
Sbjct: 419 SFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYFGTSVSSIFKGLSTEGIQF 478
Query: 906 CFWKG 910
CFW+G
Sbjct: 479 CFWRG 483
>gi|449440467|ref|XP_004138006.1| PREDICTED: uncharacterized protein LOC101222935 [Cucumis sativus]
Length = 1849
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/540 (75%), Positives = 457/540 (84%), Gaps = 13/540 (2%)
Query: 383 YDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANV 442
+ E P S+S+ ++ EK N I+W++LRK + N ++R+ D MDSLD+EA+RCA+V
Sbjct: 1273 FKELKPASSRSQSKQVAKEKDN-INWDNLRKRTETNGKTRQRTEDTMDSLDWEAIRCADV 1331
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
EI+ AI+ERGMNNMLAER+KDFLNRLV++HGSIDLEWLRDV PD+AK+YLLSIRGLGLK
Sbjct: 1332 NEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRGLGLK 1391
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 1392 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 1451
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEE 622
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARL LP PE+
Sbjct: 1452 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLPAPED 1511
Query: 623 KSIVSSTMPTMAERN-PSVVINPM-PLP---------SPEKSSLAEVRREIGKCEPIIEE 671
K IVS+T + N P + PM LP P +S ++ + G C PIIEE
Sbjct: 1512 KRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVPIIEE 1571
Query: 672 PATPEQE-CTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKA 730
PATPEQE T+ DIEDAFYEDPDEIPTIKLNIEEF+ NLQ+Y+Q+ MELQE DMSKA
Sbjct: 1572 PATPEQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKNMELQEGDMSKA 1631
Query: 731 LVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPG 790
L+AL P+AASIP PKLKNVSRLRTEHQVYELPD+HPLLE +DRREPDDPS YLLAIWTPG
Sbjct: 1632 LIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLDRREPDDPSSYLLAIWTPG 1691
Query: 791 ETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLN 850
ETANSIQLPE RC S+E +LC E+ C SCNS+RE NS VRGTLLIPCRTAMRGSFPLN
Sbjct: 1692 ETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAMRGSFPLN 1751
Query: 851 GTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
GTYFQVNEVFADH+SSLNPIDVPR+W+WNLPRR VYFGTS+ +IFKGLST+GIQ CFW+G
Sbjct: 1752 GTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGIQHCFWRG 1811
>gi|449501064|ref|XP_004161268.1| PREDICTED: uncharacterized protein LOC101230418 [Cucumis sativus]
Length = 1768
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/542 (74%), Positives = 457/542 (84%), Gaps = 15/542 (2%)
Query: 383 YDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANV 442
+ E P S+S+ ++ EK N I+W++LRK + N ++R+ D MDSLD+EA+RCA+V
Sbjct: 1190 FKELKPASSRSQSKQVAKEKDN-INWDNLRKRTETNGKTRQRTEDTMDSLDWEAIRCADV 1248
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
EI+ AI+ERGMNNMLAER+KDFLNRLV++HGSIDLEWLRDV PD+AK+YLLSIRGLGLK
Sbjct: 1249 NEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRGLGLK 1308
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 1309 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 1368
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEE 622
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARL LP PE+
Sbjct: 1369 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLPAPED 1428
Query: 623 KSIVSSTMPTMAERN-PSVVINPM-PLP---------SPEKSSLAEVRREIGKCEPIIEE 671
K IVS+T + N P + PM LP P +S ++ + G C PIIEE
Sbjct: 1429 KRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVPIIEE 1488
Query: 672 PATPEQE-CTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKA 730
PATPEQE T+ DIEDAFYEDPDEIPTIKLNIEEF+ NLQ+Y+Q+ MELQE DMSKA
Sbjct: 1489 PATPEQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKNMELQEGDMSKA 1548
Query: 731 LVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWT 788
L+AL P+AASIP PKLKNVSRLRTEHQVYELPD+HPLLE +DRREPDDPS YLLAIWT
Sbjct: 1549 LIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLKLDRREPDDPSSYLLAIWT 1608
Query: 789 PGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFP 848
PGETANSIQLPE RC S+E +LC E+ C SCNS+RE NS VRGTLLIPCRTAMRGSFP
Sbjct: 1609 PGETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAMRGSFP 1668
Query: 849 LNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFW 908
LNGTYFQVNEVFADH+SSLNPIDVPR+W+WNLPRR VYFGTS+ +IFKGLST+GIQ CFW
Sbjct: 1669 LNGTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGIQHCFW 1728
Query: 909 KG 910
+G
Sbjct: 1729 RG 1730
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum]
Length = 1796
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/586 (69%), Positives = 474/586 (80%), Gaps = 15/586 (2%)
Query: 337 QNVPSGSMLAEKTRNLGDDISVA--NKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSK 394
Q V +E ++ +++SV + S++ ++ NS + A D N N +K+K
Sbjct: 1176 QRVAEAPTFSEAIVDVREEVSVVVDSCKSEHIALKSNSNNKKHHADSTLDRANDN-TKAK 1234
Query: 395 KRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGM 454
K + EK+N +DW+SLR + Q N K+ER+ + MDSLD+EA+RCA+V EI+ I+ERGM
Sbjct: 1235 KERPGKEKQN-VDWDSLRLQAQNNGKKRERTANTMDSLDWEAVRCADVNEIAHTIRERGM 1293
Query: 455 NNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH 514
NNMLAER+KDFLNR+ REHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKSVECVRLLTLHH
Sbjct: 1294 NNMLAERIKDFLNRIFREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHH 1353
Query: 515 LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYE 574
LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYE
Sbjct: 1354 LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYE 1413
Query: 575 LHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA 634
LHY +ITFGKVFCTKSKPNCNACP+RGECRHFASAFASARLALP PEEKSIVS+T A
Sbjct: 1414 LHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPAPEEKSIVSATENKAA 1473
Query: 635 ERNPSVVINPMPLPSP-------EKSSL---AEVRREIGKCEPIIEEPATPEQECTEITE 684
+NP + + LP P E S L A + EPI+EEPA+PE E E
Sbjct: 1474 GQNPFQNFSQLLLPLPQADQTPLEHSKLINSAPIIEVPATPEPIVEEPASPEPE-QNAPE 1532
Query: 685 SDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAP 744
DIEDA++EDP+EIPTI LN+ EFT N++ +M+ MELQ+ +MSKALVAL P+AASIP P
Sbjct: 1533 VDIEDAYFEDPNEIPTITLNMAEFTQNVKKFMENNMELQQVEMSKALVALTPEAASIPVP 1592
Query: 745 KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCR 804
KLK++SRLRTEHQVYEL DSHPLLEG D+REPDDP YLLAIWTPGETA+SI P +C
Sbjct: 1593 KLKHISRLRTEHQVYELSDSHPLLEGFDKREPDDPCSYLLAIWTPGETADSIHPPAIKCN 1652
Query: 805 SKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHD 864
S+E+G+LCD++TCF+CNS+RE +SQTVRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHD
Sbjct: 1653 SQEAGRLCDDETCFACNSLREAHSQTVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHD 1712
Query: 865 SSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
SSLNPIDVPR+WLWNLPRR VYFGTS+ +IFKGL+TE IQ CFW+G
Sbjct: 1713 SSLNPIDVPRDWLWNLPRRTVYFGTSIPTIFKGLTTESIQHCFWRG 1758
>gi|356503779|ref|XP_003520681.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1764
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/530 (75%), Positives = 452/530 (85%), Gaps = 11/530 (2%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K + R+ EKKN DW+SLR + + +GK+E++ + MDSLD++A+R A+V EI+ AIKE
Sbjct: 1167 KLRSREHGKEKKNNFDWDSLRIQAEAKAGKREKTENTMDSLDWDAVRRADVSEIANAIKE 1226
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
RGMNNMLAER++ FLN LV +HG IDLEWLRDVPPD+AK++LLSIRGLGLKSVECVRLLT
Sbjct: 1227 RGMNNMLAERIQSFLNLLVDKHGGIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECVRLLT 1286
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT
Sbjct: 1287 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 1346
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMP 631
LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPG E+KSIV +T
Sbjct: 1347 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGSEQKSIVITTGN 1406
Query: 632 TMAERNPSVVINPMPLPSPEKSSLAEVRR-----------EIGKCEPIIEEPATPEQECT 680
E+NPS+VIN +PL PE + AE+++ EI +PIIEEPATPE EC+
Sbjct: 1407 NATEQNPSLVINQLPLLLPENINQAELQQTEVIRQLEAKSEINISQPIIEEPATPEPECS 1466
Query: 681 EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAAS 740
+++E+DIED F E+ EIPTIKL+IEEFT+NLQ+YMQE MELQE +MSKALVAL+P AA
Sbjct: 1467 QVSENDIEDTFNEESCEIPTIKLDIEEFTLNLQNYMQENMELQEGEMSKALVALHPGAAC 1526
Query: 741 IPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPE 800
IP PKLKNVSRLRTEH VYELPDSHPLL G ++REPDDP YLLAIWTPGETA+SIQ PE
Sbjct: 1527 IPTPKLKNVSRLRTEHYVYELPDSHPLLNGWNKREPDDPGKYLLAIWTPGETADSIQPPE 1586
Query: 801 SRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVF 860
S+C S+E G+LC+E CFSCNS RE +SQ VRGTLLIPCRTAMRGSFPLNGTYFQVNEVF
Sbjct: 1587 SKCSSQECGRLCNENECFSCNSFREASSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVF 1646
Query: 861 ADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
AD+DSSLNPI VPR W+WNL RR VYFGTS+ SIFKGLST IQ CFW+G
Sbjct: 1647 ADNDSSLNPISVPRSWIWNLDRRTVYFGTSIPSIFKGLSTREIQQCFWRG 1696
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max]
Length = 1903
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/532 (75%), Positives = 452/532 (84%), Gaps = 13/532 (2%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K K ++ EKK+ +W+SLR + Q +GK+E++ + MDSLD++A+RCA+V EI+E IKE
Sbjct: 1309 KLKTKEQGKEKKDDFNWDSLRIDAQAKAGKREKTENTMDSLDWDAVRCADVSEIAETIKE 1368
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
RGMNN LAER+K+FLNRLV EH SIDLEWLRDVPPDKAK+YLLSIRGLGLKSVECVRLLT
Sbjct: 1369 RGMNNRLAERIKNFLNRLVEEHESIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLT 1428
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ T
Sbjct: 1429 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQET 1488
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMP 631
LYELHYQ+ITFGKVFCTKSKPNCNACPMR ECRHFASAFASAR ALPGPE+KSIVS+T
Sbjct: 1489 LYELHYQMITFGKVFCTKSKPNCNACPMRAECRHFASAFASARFALPGPEQKSIVSTTGN 1548
Query: 632 TMAERNPSVVINPMPLPSPEKSS------LAEVRR------EIGKCEPIIEEPATPEQEC 679
++ +NPS +I+ + LP PE ++ L EV R EI C+PIIEEP TPE EC
Sbjct: 1549 SVINQNPSEIISQLHLPPPENTAQEDEIQLTEVSRQLESKFEINICQPIIEEPRTPEPEC 1608
Query: 680 TEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAA 739
+ +++DIEDAFYED EIPTI LNIEEFT+NLQ+YMQE MELQ +MSKALVALNP AA
Sbjct: 1609 LQESQTDIEDAFYEDSSEIPTINLNIEEFTLNLQNYMQENMELQGGEMSKALVALNPQAA 1668
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLP 799
SIP PKLKNV RLRTEH VYELPD+HPLL+G D REPDDP YLLAIWTPGETANSIQ P
Sbjct: 1669 SIPMPKLKNVGRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPP 1728
Query: 800 ESRCRSKES-GKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE 858
ES C S+E G+LC+EK CFSCNS RE NSQ VRGTLLIPCRTAMRGSFPLNGTYFQVNE
Sbjct: 1729 ESNCSSQEECGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNE 1788
Query: 859 VFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VFADHDSSLNPI VPR W+WNL RR VYFGTSV++IFKGL+T+ Q CFW+G
Sbjct: 1789 VFADHDSSLNPISVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQETQQCFWRG 1840
>gi|449451249|ref|XP_004143374.1| PREDICTED: protein ROS1-like [Cucumis sativus]
Length = 1782
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/537 (72%), Positives = 451/537 (83%), Gaps = 11/537 (2%)
Query: 383 YDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANV 442
+++ +I K + + EK+ +DW+SLRK+V+ +G+++R+ + MDSLD+EA+RCA++
Sbjct: 1207 FNDPKSDIIKPNRERVKKEKRVGVDWDSLRKQVEA-TGRRDRTTNTMDSLDWEAVRCADI 1265
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+I+ I+ERGMNN LAER+KDFL+RLV++HGS DLEWLRDVPPD+AK+YLLSIRGLGLK
Sbjct: 1266 DDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKEYLLSIRGLGLK 1325
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
SVECVRLLTL +AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 1326 SVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 1385
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEE 622
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARL+LP PEE
Sbjct: 1386 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLSLPAPEE 1445
Query: 623 KSIVSSTMPTMAERNPSVVINPMPLPSPEKS-------SLAEVRREIGKCEPIIEEPATP 675
KS++++T A+ N +VV++ PL ++S L V+ +PIIEEP TP
Sbjct: 1446 KSLINAT-ERKADINQAVVVHQQPLALTQESEPIESIQQLISVKSGGSNKDPIIEEPQTP 1504
Query: 676 EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALN 735
E EC +I+E DIED YEDPDEIPTIKLNIE FT ++Q+YMQE MELQE MSKALV L+
Sbjct: 1505 EPECPQISEIDIEDTLYEDPDEIPTIKLNIEAFTKHVQNYMQENMELQEGSMSKALVLLS 1564
Query: 736 PDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEG--MDRREPDDPSPYLLAIWTPGETA 793
P+AASIP PKLKN+SRLRTEHQVYELPDSHPLLE ++RREPDDP YLLAIWTPGETA
Sbjct: 1565 PEAASIPMPKLKNISRLRTEHQVYELPDSHPLLEKLQLERREPDDPCFYLLAIWTPGETA 1624
Query: 794 NSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTY 853
NS++ + C S+ESG LC EK CFSCNS+RE +S+ VRGTLLIPCRTAMRGSFPLNGTY
Sbjct: 1625 NSVEQLHAHCSSQESGGLCGEKECFSCNSVREPDSEVVRGTLLIPCRTAMRGSFPLNGTY 1684
Query: 854 FQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
FQVNEVFADHDSSLNPIDVPR WLW L RR VYFGTS+ +IFKGLSTE IQ CFWKG
Sbjct: 1685 FQVNEVFADHDSSLNPIDVPRSWLWKLSRRTVYFGTSIPTIFKGLSTEEIQGCFWKG 1741
>gi|218187756|gb|EEC70183.1| hypothetical protein OsI_00912 [Oryza sativa Indica Group]
Length = 1952
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/523 (72%), Positives = 435/523 (83%), Gaps = 3/523 (0%)
Query: 391 SKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
SK+K+ + KK DW+ LRKEV + G +ERS++ DS+D+E +R A VKEIS+ I+
Sbjct: 1386 SKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDTIR 1445
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
ERGMNNMLAER+KDFLNRLVR+HGSIDLEWLR V DKAKDYLLSIRGLGLKSVECVRLL
Sbjct: 1446 ERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECVRLL 1505
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE+IQKYLWPRLCKLDQR
Sbjct: 1506 TLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQKYLWPRLCKLDQR 1565
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
TLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASAFASARLALPGPEEKS+V+S
Sbjct: 1566 TLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGT 1625
Query: 631 PTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPAT--PEQECTEITESDIE 688
P AE I+ P+ S + + + +PIIEEPA+ PE E E+ E IE
Sbjct: 1626 PIAAETFHQTYISSRPVVSQLEWNSNTCHHGMNNRQPIIEEPASPEPEHETEEMKECAIE 1685
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLK 747
D+F +DP+EIPTIKLN EEFT NL+SYMQ +E+++ DMSKALVA+ P+ ASIP PKLK
Sbjct: 1686 DSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIEDADMSKALVAITPEVASIPTPKLK 1745
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
NVSRLRTEHQVYELPDSHPLLEG ++REPDDP PYLL+IWTPGETA S P+S C S+E
Sbjct: 1746 NVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLLSIWTPGETAQSTDAPKSVCNSQE 1805
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+G+LC TCFSCNS+RE +Q VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS
Sbjct: 1806 NGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSR 1865
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NPIDVPR W+WNLPRR VYFGTS+ +IFKGL+TE IQ CFW+G
Sbjct: 1866 NPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQHCFWRG 1908
>gi|449527101|ref|XP_004170551.1| PREDICTED: LOW QUALITY PROTEIN: protein ROS1-like, partial [Cucumis
sativus]
Length = 987
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/543 (70%), Positives = 448/543 (82%), Gaps = 18/543 (3%)
Query: 383 YDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANV 442
+++ +I K + + EK+ +DW+SLRK+V+ +G+++R+ + MDSLD+EA+RCA++
Sbjct: 447 FNDPKSDIIKPNRERVKKEKRVGVDWDSLRKQVEA-TGRRDRTTNTMDSLDWEAVRCADI 505
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+I+ I+ERGMNN LAER+KDFL+RLV++HGS DLEWLRDVPPD+AK+YLLSIRGLGLK
Sbjct: 506 DDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKEYLLSIRGLGLK 565
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
SVECVRLLTL +AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 566 SVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 625
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEE 622
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARL+LP PEE
Sbjct: 626 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLSLPAPEE 685
Query: 623 KSIVSSTMPTMAERNPSVVINPMPLPSPEKS-------SLAEVRREIGKCEPIIEEPATP 675
KS++++T A+ N +VV++ PL ++S L V+ +PIIEEP TP
Sbjct: 686 KSLINAT-ERKADINQAVVVHQQPLALTQESEPIESIQQLISVKSGGSNKDPIIEEPQTP 744
Query: 676 EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALN 735
E EC +I+E DIED YEDPDEIPTIKLNIE FT ++Q+YMQE MELQE MSKALV L+
Sbjct: 745 EPECPQISEIDIEDTLYEDPDEIPTIKLNIEAFTKHVQNYMQENMELQEGSMSKALVLLS 804
Query: 736 PDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEG--MDRREPDDPSPYLLAIWTPGETA 793
P+AASIP PKLKN+SRLRTEHQVYELPDSHPLLE ++RREPDDP YLLAIWTPGETA
Sbjct: 805 PEAASIPMPKLKNISRLRTEHQVYELPDSHPLLEKLQLERREPDDPCFYLLAIWTPGETA 864
Query: 794 NSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTL-------LIPCRTAMRGS 846
NS++ + C S+ESG LC EK CFSCNS+RE +S+ VRGT IPCRTAMRGS
Sbjct: 865 NSVEQLHAHCSSQESGGLCGEKECFSCNSVREPDSEVVRGTTSANQLQXXIPCRTAMRGS 924
Query: 847 FPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFC 906
FPLNGTYFQVNEVFADHDSSLNPIDVPR WLW L RR VYFGTS+ +IFKGLSTE IQ C
Sbjct: 925 FPLNGTYFQVNEVFADHDSSLNPIDVPRSWLWKLSRRTVYFGTSIPTIFKGLSTEEIQGC 984
Query: 907 FWK 909
FWK
Sbjct: 985 FWK 987
>gi|193082832|emb|CAQ58412.1| putative transcriptional activator DEMETER [Hordeum vulgare subsp.
vulgare]
Length = 1981
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/546 (70%), Positives = 442/546 (80%), Gaps = 6/546 (1%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ +S+E+ +K E + SK+KK +A KK DW+ LRKEV N G +ERS +
Sbjct: 1396 VASDSIEKPKDTNKALPEVPADRSKTKKTRAG--KKRTYDWDILRKEVLANRGNEERSEN 1453
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D+LD+E +R NVKEIS I+ERGMNNMLAER+KDFLNR+VR+HGSIDLEWLR V PD
Sbjct: 1454 AKDALDWETIRQINVKEISNTIRERGMNNMLAERIKDFLNRVVRDHGSIDLEWLRHVDPD 1513
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAK+YLLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1514 KAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1573
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
ELYP+LE+IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFA
Sbjct: 1574 ELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFA 1633
Query: 608 SAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEP 667
SAFASARLALPGPEEKS+V+S P + I+PM L + ++ A + C+P
Sbjct: 1634 SAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISPMRLNQLDWNAHAH-DHILDNCQP 1692
Query: 668 II--EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQE 724
II PE E E+ ES IED F +DP+EIPTIKLN EEF NL++YMQ +E+++
Sbjct: 1693 IIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIKLNFEEFAQNLKNYMQVNNIEMED 1752
Query: 725 CDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLL 784
DMS ALVA+ P+AASIP P+LKNVSRLRTEHQVYELPDSHPLLEG D+REPDDP PYLL
Sbjct: 1753 ADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPDSHPLLEGYDQREPDDPCPYLL 1812
Query: 785 AIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMR 844
+IWTPGETA SI P++ C S ESGKLCD CFSCNSMRE +QTVRGT+L+PCRTAMR
Sbjct: 1813 SIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCNSMREAQAQTVRGTILVPCRTAMR 1872
Query: 845 GSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
GSFPLNGTYFQVNEVFADHDSS NP+DVPR W+W+LPRR VYFGTSV SIFKGL+TE IQ
Sbjct: 1873 GSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLPRRTVYFGTSVPSIFKGLTTEDIQ 1932
Query: 905 FCFWKG 910
CFW+G
Sbjct: 1933 QCFWRG 1938
>gi|357155497|ref|XP_003577140.1| PREDICTED: uncharacterized protein LOC100841571 [Brachypodium
distachyon]
Length = 1974
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/544 (69%), Positives = 438/544 (80%), Gaps = 5/544 (0%)
Query: 371 NSVEQVLSAHKVYDETNPN-ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRM 429
+S+E++ K + E + SK+KK + KK A DW+ LRKEV N G +ER+ +
Sbjct: 1389 DSIEKLKDIRKSFPEVPADGSSKAKKARVGTGKKRAYDWDILRKEVLVNHGNEERANNAK 1448
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D+LD+E +R +VKEIS+ I+ERGMNNMLAER+K FLNRLV +HGSIDLEWLR V PDKA
Sbjct: 1449 DALDWETIRQIDVKEISDTIRERGMNNMLAERIKAFLNRLVTDHGSIDLEWLRYVDPDKA 1508
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
K+YLLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLEL
Sbjct: 1509 KEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEL 1568
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
YP+LE+IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASA
Sbjct: 1569 YPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASA 1628
Query: 610 FASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPII 669
FASARLALPGPEEKS+V+S P +AE I+ PL + ++ +G +PII
Sbjct: 1629 FASARLALPGPEEKSLVTSGNPIVAESCQQPYISSRPLNQLDWNAHPH-DHVLGNRQPII 1687
Query: 670 --EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECD 726
PE E E+ E IED F++DP+EIPTIKLN EEF NL++YMQ +++++ D
Sbjct: 1688 EEPASPEPEPETAELKEGAIEDMFFDDPEEIPTIKLNFEEFAQNLKNYMQVNNIDIEDAD 1747
Query: 727 MSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAI 786
MS ALVA+ P+AASIP P+LKNVSRLRTEHQVYELPDSHPLLEG D+REPDDP PYLL+I
Sbjct: 1748 MSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPDSHPLLEGFDQREPDDPCPYLLSI 1807
Query: 787 WTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGS 846
WTPGETA S P + C S ESGKLCD CFSCNS+RE +Q VRGTLLIPCRTAMRGS
Sbjct: 1808 WTPGETAQSADAPMTSCNSHESGKLCDSSACFSCNSIREVQAQKVRGTLLIPCRTAMRGS 1867
Query: 847 FPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFC 906
FPLNGTYFQVNEVFADHDSS NPIDVPR W+WNLPRR VYFGTSV +IFKGL+TE IQ C
Sbjct: 1868 FPLNGTYFQVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSVPTIFKGLTTEDIQHC 1927
Query: 907 FWKG 910
FW+G
Sbjct: 1928 FWRG 1931
>gi|339699499|gb|AEJ87849.1| hypothetical protein [Fragaria x ananassa]
Length = 496
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/494 (76%), Positives = 430/494 (87%), Gaps = 7/494 (1%)
Query: 422 QERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWL 481
+E++R+ MDS+D+EA+R ANV +I++ IKERGMNNMLAER+K+FLNRL+REHGS+DLEWL
Sbjct: 1 REKTRNTMDSVDWEAVRTANVNDIAQTIKERGMNNMLAERIKEFLNRLLREHGSVDLEWL 60
Query: 482 RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 541
RDVPPD+AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES
Sbjct: 61 RDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 120
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY++ITFGKVFCTKSKPNCNACPMRG
Sbjct: 121 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYRMITFGKVFCTKSKPNCNACPMRG 180
Query: 602 ECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRRE 661
ECRHFASAFASARLALPGP +KSIVSST +AE+NP+VV N M LP PE L +V
Sbjct: 181 ECRHFASAFASARLALPGPGQKSIVSSTSSPVAEKNPAVVGNIMSLPPPENYPLQKVGAY 240
Query: 662 IGKCEPIIEEPATPEQECTEITESDIEDAF-----YEDPDEIPTIKLNIEEFTVNLQSYM 716
+ EPIIEEP +PEQE T ++ S+IED +DPD+I I +++E+ T LQ +M
Sbjct: 241 --RSEPIIEEPVSPEQEFTNLSHSEIEDLLNEEEYDDDPDDITHINISMEQLTDTLQDHM 298
Query: 717 QEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREP 776
Q M+L++ D+SKALVALNP A S+P PKLK+VSRLRTEHQVYELPDSHPLLEG+DR EP
Sbjct: 299 QNNMDLKDGDLSKALVALNPAATSLPTPKLKDVSRLRTEHQVYELPDSHPLLEGVDRLEP 358
Query: 777 DDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLL 836
DDPSPYLLAIWTPGETANS Q PES C SKE LC EKTCF+CNS+RE SQ VRGT+L
Sbjct: 359 DDPSPYLLAIWTPGETANSFQPPESSCGSKEGNTLCSEKTCFTCNSIREEKSQIVRGTIL 418
Query: 837 IPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFK 896
IPCRTAMRGSFPLNGTYFQVNE+FADH SS NPIDVPR W+WNLPRR VYFGTSV+SIF+
Sbjct: 419 IPCRTAMRGSFPLNGTYFQVNEMFADHASSANPIDVPRGWIWNLPRRPVYFGTSVTSIFR 478
Query: 897 GLSTEGIQFCFWKG 910
GL+TEGIQ+CFWKG
Sbjct: 479 GLTTEGIQYCFWKG 492
>gi|413925773|gb|AFW65705.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1904
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/546 (69%), Positives = 435/546 (79%), Gaps = 5/546 (0%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ +S ++ + K + N SK+K R KK DW+SLRK+V N G ++RS D
Sbjct: 1320 VASDSTQKFVDTQKGPSKARQNGSKAKVRGR--PKKKTDDWDSLRKKVLSNGGDKQRSHD 1377
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D++D+EA+R A V+EISE I+ERGMNNMLAER+K+FLNRLV +HGSIDLEWLRDV PD
Sbjct: 1378 ARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPD 1437
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAKD+LLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1438 KAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1497
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E+YP+LE IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCN+CPMR EC+HFA
Sbjct: 1498 EMYPMLEHIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFA 1557
Query: 608 SAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEP 667
SAFASARLALP PEEK +V+ P + E + IN + E S+ G +P
Sbjct: 1558 SAFASARLALPAPEEKCLVTLEDPNVVEFSHQTYINSGSVGQLEWSANYPKHAVSGNHQP 1617
Query: 668 IIEEPATP--EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQE 724
IIEEP +P E E E E IED F E+ DEIPTI LNIEEFT NL+ YMQ +E++
Sbjct: 1618 IIEEPLSPECETENIEAHEGAIEDFFCEESDEIPTINLNIEEFTQNLKDYMQANNVEIEY 1677
Query: 725 CDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLL 784
DMSKALVA+ PDAASIP PKLKNV+RLRTEHQVYELPDSHPLLEG ++REPDDP PYLL
Sbjct: 1678 ADMSKALVAITPDAASIPTPKLKNVNRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLL 1737
Query: 785 AIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMR 844
+IWTPGETA SI P++ C S E+G+LC TCFSCN++RE +Q VRGTLLIPCRTAMR
Sbjct: 1738 SIWTPGETAQSIDAPKTFCDSGETGRLCGSSTCFSCNNIREMQAQKVRGTLLIPCRTAMR 1797
Query: 845 GSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
GSFPLNGTYFQVNEVFADH SS NPIDVPR W+W+LPRR VYFGTSV +IF+GL+TE IQ
Sbjct: 1798 GSFPLNGTYFQVNEVFADHCSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQ 1857
Query: 905 FCFWKG 910
CFW+G
Sbjct: 1858 RCFWRG 1863
>gi|333471379|gb|AEF38423.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1975
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/507 (72%), Positives = 421/507 (83%), Gaps = 4/507 (0%)
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
DW+ LRKEV + G +ER + D+LD+E +R +VKEIS AI+ERGMNNML+ER++DFL
Sbjct: 1427 DWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDFL 1486
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
NR+VR+HGSIDLEWLR V PDKAK+YLLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI
Sbjct: 1487 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1546
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVF
Sbjct: 1547 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1606
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTKSKPNCNACPMR EC+HFASAFASARLALPGPEEKS+V+S P + I+ M
Sbjct: 1607 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSMR 1666
Query: 647 LPSPEKSSLAEVRREIGKCEPII--EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLN 704
L + ++ A + +PII PE E E+ ES IED F +DP+EIPTIKLN
Sbjct: 1667 LNQLDWNANAH-DHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIKLN 1725
Query: 705 IEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPD 763
EEF NL++YMQ +E+++ DMS ALVA+ P+AASIP P+LKNVSRLRTEHQVYELPD
Sbjct: 1726 FEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPD 1785
Query: 764 SHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSM 823
SHPLLEG D+REPDDP PYLL+IWTPGETA SI P++ C S ESGKLCD CFSCNSM
Sbjct: 1786 SHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCNSM 1845
Query: 824 RETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRR 883
RE +QTVRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADHDSS NP+DVPR W+W+LPRR
Sbjct: 1846 REAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLPRR 1905
Query: 884 MVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VYFGTSV SIFKGL+TE IQ CFW+G
Sbjct: 1906 TVYFGTSVPSIFKGLTTEDIQQCFWRG 1932
>gi|333471383|gb|AEF38425.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1981
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/507 (72%), Positives = 421/507 (83%), Gaps = 4/507 (0%)
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
DW+ LRKEV + G +ER + D+LD+E +R +VKEIS AI+ERGMNNML+ER++DFL
Sbjct: 1433 DWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDFL 1492
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
NR+VR+HGSIDLEWLR V PDKAK+YLLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI
Sbjct: 1493 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1552
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVF
Sbjct: 1553 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1612
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTKSKPNCNACPMR EC+HFASAFASARLALPGPEEKS+V+S P + I+ M
Sbjct: 1613 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSMR 1672
Query: 647 LPSPEKSSLAEVRREIGKCEPII--EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLN 704
L + ++ A + +PII PE E E+ ES IED F +DP+EIPTIKLN
Sbjct: 1673 LNQLDWNANAH-DHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIKLN 1731
Query: 705 IEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPD 763
EEF NL++YMQ +E+++ DMS ALVA+ P+AASIP P+LKNVSRLRTEHQVYELPD
Sbjct: 1732 FEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPD 1791
Query: 764 SHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSM 823
SHPLLEG D+REPDDP PYLL+IWTPGETA SI P++ C S ESGKLCD CFSCNSM
Sbjct: 1792 SHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCNSM 1851
Query: 824 RETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRR 883
RE +QTVRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADHDSS NP+DVPR W+W+LPRR
Sbjct: 1852 REAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLPRR 1911
Query: 884 MVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VYFGTSV SIFKGL+TE IQ CFW+G
Sbjct: 1912 TVYFGTSVPSIFKGLTTEDIQQCFWRG 1938
>gi|222617989|gb|EEE54121.1| hypothetical protein OsJ_00892 [Oryza sativa Japonica Group]
Length = 1964
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/536 (69%), Positives = 428/536 (79%), Gaps = 17/536 (3%)
Query: 391 SKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
SK+K+ + KK DW+ LRKEV + G +ERS++ DS+D+E +R A VKEIS+ I+
Sbjct: 1386 SKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDTIR 1445
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVEC---- 506
ERGMNNMLAER+KDFLNRLVR+HGSIDLEWLR V DKAKDYLLSIRGLGLKSVEC
Sbjct: 1446 ERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECNMCE 1505
Query: 507 ---------VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 557
R+ ++ + VDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE+IQ
Sbjct: 1506 AWMGATSAPTRVSSVAPVG-DVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQ 1564
Query: 558 KYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL 617
KYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASAFASARLAL
Sbjct: 1565 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLAL 1624
Query: 618 PGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPE- 676
PGPEEKS+V+S P AE I+ P+ S + + + +PIIEEPA+PE
Sbjct: 1625 PGPEEKSLVTSGTPIAAETFHQTYISSRPVVSQLEWNSNTCHHGMNNRQPIIEEPASPEP 1684
Query: 677 -QECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVAL 734
E E+ E IED+F +DP+EIPTIKLN EEFT NL+SYMQ +E+++ DMSKALVA+
Sbjct: 1685 EHETEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIEDADMSKALVAI 1744
Query: 735 NPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
P+ ASIP PKLKNVSRLRTEHQVYELPDSHPLLEG ++REPDDP PYLL+IWTPGETA
Sbjct: 1745 TPEVASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLLSIWTPGETAQ 1804
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+S C S+E+G+LC TCFSCNS+RE +Q VRGTLLIPCRTAMRGSFPLNGTYF
Sbjct: 1805 STDAPKSVCNSQENGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMRGSFPLNGTYF 1864
Query: 855 QVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
QVNEVFADHDSS NPIDVPR W+WNLPRR VYFGTS+ +IFKGL+TE IQ CFW+G
Sbjct: 1865 QVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQHCFWRG 1920
>gi|333471381|gb|AEF38424.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1982
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/507 (72%), Positives = 419/507 (82%), Gaps = 4/507 (0%)
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
DW+ LRKEV + G + R + D+LD+E +R +VKEIS I+ERGMNNML+ER++DFL
Sbjct: 1434 DWDILRKEVLASRGNEGRGENAKDALDWETIRQIDVKEISNTIRERGMNNMLSERIQDFL 1493
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
NR+VR+HGSIDLEWLR V PDKAK+YLLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI
Sbjct: 1494 NRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRI 1553
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQ+ITFGKVF
Sbjct: 1554 CVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1613
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTKSKPNCNACPMR EC+HFASAFASARLALPGPEEKS+V+S P + I+ M
Sbjct: 1614 CTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSMR 1673
Query: 647 LPSPEKSSLAEVRREIGKCEPII--EEPATPEQECTEITESDIEDAFYEDPDEIPTIKLN 704
L + ++ A + +PII PE E E+ ES IED F +DP+EIPTIKLN
Sbjct: 1674 LNQLDWNANAH-DHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPEEIPTIKLN 1732
Query: 705 IEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPD 763
EEF NL++YMQ +E+++ DMS ALVA+ P+AASIP P+LKNVSRLRTEHQVYELPD
Sbjct: 1733 FEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTEHQVYELPD 1792
Query: 764 SHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSM 823
SHPLLEG D+REPDDP PYLL+IWTPGETA SI P++ C S ESGKLCD CFSCNSM
Sbjct: 1793 SHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSSACFSCNSM 1852
Query: 824 RETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRR 883
RE +QTVRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADHDSS NP+DVPR W+W+LPRR
Sbjct: 1853 REAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRRWIWDLPRR 1912
Query: 884 MVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VYFGTSV SIFKGL+TE IQ CFW+G
Sbjct: 1913 TVYFGTSVPSIFKGLTTEDIQQCFWRG 1939
>gi|42569673|ref|NP_181190.3| protein ROS1 [Arabidopsis thaliana]
gi|71658826|sp|Q9SJQ6.2|ROS1_ARATH RecName: Full=Protein ROS1; AltName: Full=DEMETER-like protein 1;
AltName: Full=Repressor of silencing 1
gi|30909281|gb|AAP37178.1| ROS1 [Arabidopsis thaliana]
gi|330254169|gb|AEC09263.1| protein ROS1 [Arabidopsis thaliana]
Length = 1393
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/522 (69%), Positives = 431/522 (82%), Gaps = 10/522 (1%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K K +K E+K A DW+ LR+E Q +G +E++R MD++D++A+R A+VKE++E IK
Sbjct: 843 KEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKS 902
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
RGMN+ LAER++ FL+RLV +HGSIDLEWLRDVPPDKAK+YLLS GLGLKSVECVRLLT
Sbjct: 903 RGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLT 962
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ+T
Sbjct: 963 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKT 1022
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMP 631
LYELHYQ+ITFGKVFCTKSKPNCNACPM+GECRHFASAFASARLALP E+ M
Sbjct: 1023 LYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEK------GMG 1076
Query: 632 TMAERNPSVVINPMPLPSPEKSSL---AEVRREIGKCEPIIEEPATPEQECTEITESDIE 688
T ++NP + P P + S + +E +++ CEPIIEEPA+PE E E++ +DIE
Sbjct: 1077 T-PDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIE 1135
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKN 748
+AF+EDP+EIPTI+LN++ FT NL+ M+ ELQ+ +MS ALVAL + AS+P PKLKN
Sbjct: 1136 EAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKN 1195
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKES 808
+S+LRTEH+VYELPD HPLL +++REPDDP YLLAIWTPGETA+SIQ S C + +
Sbjct: 1196 ISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQAN 1255
Query: 809 GKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
G LCDE+TCFSCNS++ET SQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSLN
Sbjct: 1256 GMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLN 1315
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PI+VPRE +W LPRR VYFGTSV +IFKGLSTE IQ CFWKG
Sbjct: 1316 PINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKG 1357
>gi|297827133|ref|XP_002881449.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
gi|297327288|gb|EFH57708.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
Length = 1619
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/506 (70%), Positives = 420/506 (83%), Gaps = 4/506 (0%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
A DW+SLR+E + GK+E++ MDS+D+EA+R A+V E++E IK+RGMN+MLAER++
Sbjct: 1074 AFDWDSLRREAEGREGKREKTTRTMDSVDWEAIRTADVSEVAETIKKRGMNHMLAERIQG 1133
Query: 465 FLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVG 524
FLNRLV EHGSIDLEWLRD+PPDKAK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNV
Sbjct: 1134 FLNRLVNEHGSIDLEWLRDIPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVA 1193
Query: 525 RIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
RIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ+TLYELHYQ+ITFGK
Sbjct: 1194 RIAVRLGWVPLQPLPESLQLHLLEMYPILESIQKYLWPRLCKLDQKTLYELHYQMITFGK 1253
Query: 585 VFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINP 644
VFCTKSKPNCNACPMRGECRHFASAF SARLALP E+ P +
Sbjct: 1254 VFCTKSKPNCNACPMRGECRHFASAFVSARLALPSTEK----GMGTPDKNPLPLHLPEPL 1309
Query: 645 MPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLN 704
E +E +++ CEPIIEEPA+PE E +++ +DIEDAF+EDP+EIPTI+LN
Sbjct: 1310 YREQGSEVKQHSEPAKKVTCCEPIIEEPASPEPESAQVSIADIEDAFFEDPEEIPTIRLN 1369
Query: 705 IEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDS 764
+ FT NL+ +++ ELQ+ +MS ALVAL +AA +P PKLKN+S+LRTEHQVYELPDS
Sbjct: 1370 TDAFTSNLKKIIEQNQELQDGNMSTALVALTAEAAYLPMPKLKNISQLRTEHQVYELPDS 1429
Query: 765 HPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMR 824
HPLL +++REPDDP YLLAIWTPGETA+SIQ S+C S+E+G++CDE+TCFSCNS++
Sbjct: 1430 HPLLVQLEKREPDDPCSYLLAIWTPGETADSIQPTVSKCISQENGQICDEETCFSCNSIK 1489
Query: 825 ETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRM 884
E SQTVRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSLNPIDVPRE LW+L RR
Sbjct: 1490 EARSQTVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPIDVPRETLWDLTRRA 1549
Query: 885 VYFGTSVSSIFKGLSTEGIQFCFWKG 910
VYFGTS+ +IFKGLSTE IQ CFW+G
Sbjct: 1550 VYFGTSIPTIFKGLSTETIQQCFWRG 1575
>gi|297827135|ref|XP_002881450.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
gi|297327289|gb|EFH57709.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
Length = 1432
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/523 (68%), Positives = 426/523 (81%), Gaps = 4/523 (0%)
Query: 388 PNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISE 447
P++ ++K +K EKK A DW+SLR+E Q G +E++ MD++D+EA+R A+V E++E
Sbjct: 878 PDVQEAKGKKVLKEKKEAFDWDSLRREAQGREGIREKTARTMDTVDWEAIRAADVSEVAE 937
Query: 448 AIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
IK RGMN+ LAER++ FL+RLV +HGSIDLEWLRDVPPDKAK+YLLS GLGLKSVECV
Sbjct: 938 TIKSRGMNHKLAERIQGFLDRLVDDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECV 997
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKL
Sbjct: 998 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPILESIQKYLWPRLCKL 1057
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVS 627
DQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALP E+
Sbjct: 1058 DQKTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPSTEK----G 1113
Query: 628 STMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDI 687
P + E +E +++ EPIIEEPA+PE E +++ +DI
Sbjct: 1114 MATPDKNPLPLHLPEPLQREQGSEVVQHSEPAKKVTCSEPIIEEPASPEPESAQVSIADI 1173
Query: 688 EDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLK 747
EDAF+EDP+EIPTI+LN++ FT NL+ M+ ELQ+ +MS ALVAL +AAS+P PKLK
Sbjct: 1174 EDAFFEDPEEIPTIRLNMDAFTSNLKKLMEHNKELQDGNMSSALVALTAEAASLPIPKLK 1233
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
N+S+LRTEHQVYELPD HPLL +++REPDDP YLLAIWTPGETA+SIQ S+C +
Sbjct: 1234 NISQLRTEHQVYELPDEHPLLVHLEKREPDDPCSYLLAIWTPGETADSIQPAVSKCIFQA 1293
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+GKLCDE+TCFSCNS++E +Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSL
Sbjct: 1294 NGKLCDEETCFSCNSIKEARTQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSL 1353
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NPIDVPREW+W+LPRR VYFGTS+ +IFKGL TE IQ CFWKG
Sbjct: 1354 NPIDVPREWIWDLPRRTVYFGTSIPTIFKGLPTETIQQCFWKG 1396
>gi|357142343|ref|XP_003572540.1| PREDICTED: uncharacterized protein LOC100823274 [Brachypodium
distachyon]
Length = 1946
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/523 (69%), Positives = 423/523 (80%), Gaps = 4/523 (0%)
Query: 392 KSKKRKADGE-KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
KSK +K G+ KK A DWE+LRKEV N G ++RS + DS+D+EA+R A+V++ISE I+
Sbjct: 1387 KSKGKKVRGQTKKKAYDWENLRKEVSCNGGNKQRSHNTKDSVDWEAVRQADVRDISETIR 1446
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
ERGMNN+LAER+K+FLNRLV +HGSIDLEWLRD+ PDKAKDYLLSIRGLGLKS ECVRLL
Sbjct: 1447 ERGMNNVLAERIKEFLNRLVSDHGSIDLEWLRDLQPDKAKDYLLSIRGLGLKSAECVRLL 1506
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLHH+AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKYLWPRLC+LDQ
Sbjct: 1507 TLHHMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYLWPRLCELDQL 1566
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
TLYELHYQ+ITFGKVFCTKSKPNCN+CPMR EC+HFASAFASARL+LPGPEEKS+V+S
Sbjct: 1567 TLYELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLSLPGPEEKSLVASEA 1626
Query: 631 PTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPII--EEPATPEQECTEITESDIE 688
AE I+P P+ E ++ G +PI+ PE E E + IE
Sbjct: 1627 TNAAESCHQTYIDPRPVGQLEWNTNDCRHPGSGNHQPIVEEPSSPEPEPEIAETKQVSIE 1686
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLK 747
D F E+PDEIPTI LNI+EF NL+SYMQ +E+++ DMS+ALVA+ P+AASIP P+LK
Sbjct: 1687 DFFTEEPDEIPTISLNIKEFKQNLKSYMQANNIEIEDADMSRALVAITPEAASIPTPRLK 1746
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
NVSRLRTEHQVYELPDSHPLLEG DRR+ DDP PYLL+IWTPGETA S P++ C S+E
Sbjct: 1747 NVSRLRTEHQVYELPDSHPLLEGFDRRQTDDPCPYLLSIWTPGETAQSTDAPKTFCNSEE 1806
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+GKLC TCFSC+S RE ++ VR T+LIPCRTAMRGSFPLNGTYFQVNE+FADH SS
Sbjct: 1807 TGKLCGSSTCFSCSSAREVQARKVRATILIPCRTAMRGSFPLNGTYFQVNELFADHYSSQ 1866
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NPIDV R +WNLPRR VYFGTS+ +IF+GL+TE IQ CFW+G
Sbjct: 1867 NPIDVERSLIWNLPRRTVYFGTSIPTIFRGLTTEEIQQCFWRG 1909
>gi|255575365|ref|XP_002528585.1| Protein ROS1, putative [Ricinus communis]
gi|223531981|gb|EEF33793.1| Protein ROS1, putative [Ricinus communis]
Length = 1634
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/603 (62%), Positives = 430/603 (71%), Gaps = 90/603 (14%)
Query: 366 KLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERS 425
K E + +E S K DE N K+K R+ E + +DW++LRK+V+ N K+ER+
Sbjct: 1062 KTTESDMIEHGFSEIKELDEMNAATRKAKSRRVGKEIREDVDWDALRKQVEANGRKRERT 1121
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+ MDSLD+EA+RCA V +I+ IKERGMNN+LAER+K+FLNRLVREHGSIDLEWLRDVP
Sbjct: 1122 PNTMDSLDWEAVRCAEVNDIANTIKERGMNNVLAERIKNFLNRLVREHGSIDLEWLRDVP 1181
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PDKAK+YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH
Sbjct: 1182 PDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 1241
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRH
Sbjct: 1242 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 1301
Query: 606 FASAFA-------------------------------------------SARLALPGPEE 622
FASAFA SARLALPGPEE
Sbjct: 1302 FASAFARSKNLNVIKETSYNWSFRLSTMNSMCKQSTGLFPVSKDHHVKCSARLALPGPEE 1361
Query: 623 KSIVSSTMPTMAERNPSVVINPMPLPSPEKS------------SLAEVRREIGKCEPIIE 670
K +VS+T E NP+ ++ +PLP P+ + +E + + CEPI+E
Sbjct: 1362 KGMVSATENRTNEPNPAAMVGQLPLPLPQATEQSEENQLSKSIQQSEAQYGVNSCEPIVE 1421
Query: 671 EPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKA 730
EP++PE E ++TE+D+ED F EDPDEIPTIKLNIEEFT NLQ+YMQ MELQECDMSKA
Sbjct: 1422 EPSSPEPERIQVTENDMEDTFCEDPDEIPTIKLNIEEFTQNLQNYMQNNMELQECDMSKA 1481
Query: 731 LVALNPDAASIPAPKLKNVSRLRTEHQVYELP--DSHPLLEGMDRREPDDPSPYLLAIWT 788
L S ++ H +Y L SH SP + WT
Sbjct: 1482 LTG----------------SSIQYGHPLYTLTLFQSH-------------ISP---SYWT 1509
Query: 789 PG-ETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSF 847
ETANSIQ PE+ C +E GKLCDEKTCFSCNS+RE NSQ VRGTLLIPCRTAMRGSF
Sbjct: 1510 CACETANSIQPPENNCNLQEDGKLCDEKTCFSCNSIREANSQIVRGTLLIPCRTAMRGSF 1569
Query: 848 PLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCF 907
PLNGTYFQVNEVFADHDSSLNPIDVPR W+WNLPRR VYFGTS+ +IFKGL+TEGIQ CF
Sbjct: 1570 PLNGTYFQVNEVFADHDSSLNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEGIQHCF 1629
Query: 908 WKG 910
W+G
Sbjct: 1630 WRG 1632
>gi|242085358|ref|XP_002443104.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
gi|241943797|gb|EES16942.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
Length = 1856
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/546 (65%), Positives = 415/546 (76%), Gaps = 27/546 (4%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ S + + K E N SK+KK + +KK DW+SLRKEV N G ++RS D
Sbjct: 1293 VASGSTQNFIGTQKGLSEAQQNGSKAKKVRGPPKKK-TYDWDSLRKEVLSNGGDKQRSHD 1351
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D++D+EA+R A V+EISE I+ERGMNNMLAER+K+FL+RLV +HGSIDLEWLRDV PD
Sbjct: 1352 ARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLDRLVTDHGSIDLEWLRDVQPD 1411
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAKD+LLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1412 KAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1471
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E+Y ELHYQ+ITFGKVFCTKSKPNCN+CPMR EC+HFA
Sbjct: 1472 EMY-----------------------ELHYQMITFGKVFCTKSKPNCNSCPMRVECKHFA 1508
Query: 608 SAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEP 667
SAFASARLALP PEEK + +S P +AE + IN + E ++ +P
Sbjct: 1509 SAFASARLALPAPEEKRLATSEDPNVAEFCHPIYINSGTVGQLEWTANYPKHAVSDNHQP 1568
Query: 668 IIEEPATPEQEC--TEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQE 724
IIEEP +PE E E E IED F EDPDEIPTI LNIEEFT NL++YMQ +E++
Sbjct: 1569 IIEEPLSPEPEPENVEAKEGAIEDFFCEDPDEIPTINLNIEEFTQNLKNYMQANNVEIEY 1628
Query: 725 CDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLL 784
DMSKALVA+ PDAASIP PKLKNVSRLRTEHQVYELPDSHPLLEG ++REPDDP PYLL
Sbjct: 1629 ADMSKALVAITPDAASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLL 1688
Query: 785 AIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMR 844
+IWTPGETA S P++ C S E+G+LC TCFSCNS+RET +Q VRGTLLIPCRTAMR
Sbjct: 1689 SIWTPGETAQSTDAPKTFCDSGETGRLCGSSTCFSCNSIRETQAQKVRGTLLIPCRTAMR 1748
Query: 845 GSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
GSFPLNGTYFQVNEVFADH SS NPIDVPR W+W+LPRR VYFGTSV +IF+GL+TE IQ
Sbjct: 1749 GSFPLNGTYFQVNEVFADHYSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQ 1808
Query: 905 FCFWKG 910
CFW+G
Sbjct: 1809 QCFWRG 1814
>gi|413936924|gb|AFW71475.1| hypothetical protein ZEAMMB73_049283 [Zea mays]
Length = 1906
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/546 (65%), Positives = 412/546 (75%), Gaps = 27/546 (4%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ S ++ + K E N SK+KK + + K DW+SLRKEV N G ++R+ D
Sbjct: 1344 VASGSTQKFIDTQKSPSEVQQNGSKAKKVRGRPKTK-TYDWDSLRKEVFSNGGDKQRNND 1402
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D++D+EA+R A V+EISE I+ERGMNNMLAER+K+FLNRLV +HG IDLEWLRDVPPD
Sbjct: 1403 ARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGGIDLEWLRDVPPD 1462
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAKD+LLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1463 KAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1522
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E+Y ELHYQ+ITFGKVFCTKSKPNCN+CP+R EC+HFA
Sbjct: 1523 EMY-----------------------ELHYQMITFGKVFCTKSKPNCNSCPLRAECKHFA 1559
Query: 608 SAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEP 667
SAFASARLALP PEEK + +S P + E IN + E S+ G +P
Sbjct: 1560 SAFASARLALPAPEEKRLATSEDPNVVEFCHQTYINSGAVGELEWSANYPKHAVCGNLQP 1619
Query: 668 IIEEPATPEQECTEITESD--IEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQE 724
IEEP +PE E + D IED F EDPDEIPTI LNIEEFT NL++YMQ +E++
Sbjct: 1620 FIEEPLSPEPEPENVEAKDGAIEDFFNEDPDEIPTINLNIEEFTQNLKNYMQANHVEIEY 1679
Query: 725 CDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLL 784
DMSKALVA+ P+AASIP PKLKNVSRLRTEHQVYELPDSHPLLEG ++REPDDP PYLL
Sbjct: 1680 ADMSKALVAITPEAASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLL 1739
Query: 785 AIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMR 844
+IWTPGETA S P++ C S E+G+LC TCFSCNS+RE +Q VRGTLLIPCRTAMR
Sbjct: 1740 SIWTPGETAQSTNAPKTFCDSGETGQLCGSLTCFSCNSLREMQAQKVRGTLLIPCRTAMR 1799
Query: 845 GSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
GSFPLNGTYFQVNEVFADH SS NPIDVPR W+W+LPRR VYFGTSV +IF+GL+TE IQ
Sbjct: 1800 GSFPLNGTYFQVNEVFADHCSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQ 1859
Query: 905 FCFWKG 910
CFW+G
Sbjct: 1860 QCFWRG 1865
>gi|242065150|ref|XP_002453864.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|241933695|gb|EES06840.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|333471385|gb|AEF38426.1| 5-methylcytosine DNA glycosylase [Sorghum bicolor]
Length = 1891
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/546 (65%), Positives = 412/546 (75%), Gaps = 28/546 (5%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ S ++ + K E N SK+KK + G + DW+SLRKEV N G ++RS D
Sbjct: 1330 VAAGSTQKFIDIQKGPPEAQQNGSKAKKVR--GRPRKTYDWDSLRKEVLSNGGDKQRSHD 1387
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D++D+EA+R A V+EISE I+ERGMNNMLAER+K+FLNRLV +HGSIDLEWLRDV PD
Sbjct: 1388 ARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPD 1447
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAKD+LLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1448 KAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1507
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E+Y ELHYQ+ITFGKVFCTKSKPNCN+CPMR EC+HFA
Sbjct: 1508 EMY-----------------------ELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFA 1544
Query: 608 SAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEP 667
SAFASARLALP PEEK + +S + E IN + E S+ G +P
Sbjct: 1545 SAFASARLALPAPEEKRLATSEDANVVEFCHQTYINSGTVGQLEWSANYPKHAVSGNHQP 1604
Query: 668 IIEEPATPEQEC--TEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQE 724
IIEEP +PE E E E IED F EDPDEIPTI LNIEEFT NL++YMQ ++++
Sbjct: 1605 IIEEPLSPEPEPENVEAKEGAIEDFFCEDPDEIPTINLNIEEFTQNLKNYMQANNVDIEY 1664
Query: 725 CDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLL 784
DMSKALVA+ PDAASIP PKLKN+SRLRTEHQVYELPDSHPLL+G ++REPDDP PYLL
Sbjct: 1665 ADMSKALVAITPDAASIPTPKLKNISRLRTEHQVYELPDSHPLLDGFEQREPDDPCPYLL 1724
Query: 785 AIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMR 844
+IWTPGETA S P++ C S E+G+LC TCFSCNS+RE +Q VRGTLLIPCRTAMR
Sbjct: 1725 SIWTPGETAQSTDAPKTFCDSGETGRLCGSSTCFSCNSIREMQAQKVRGTLLIPCRTAMR 1784
Query: 845 GSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
GSFPLNGTYFQVNEVFADH SS NPIDVPR W+W+LPRR VYFGTSV +IF+GL+TE IQ
Sbjct: 1785 GSFPLNGTYFQVNEVFADHYSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEQIQ 1844
Query: 905 FCFWKG 910
CFW+G
Sbjct: 1845 QCFWRG 1850
>gi|222631766|gb|EEE63898.1| hypothetical protein OsJ_18723 [Oryza sativa Japonica Group]
Length = 1857
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/533 (66%), Positives = 419/533 (78%), Gaps = 11/533 (2%)
Query: 385 ETNPNISKSKKRKADGEKKNA-IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK + +K + DW+ LR++ N +ER DR DS+D+EA+RCA+V+
Sbjct: 1288 DTAAQASKPKKSRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQ 1347
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER++ FLNRLV +HGSIDLEWLRDVPPD AKDYLLSIRGLGLKS
Sbjct: 1348 RISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKS 1407
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPR
Sbjct: 1408 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPR 1467
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMR ECRHFASAFASARLALP P++K
Sbjct: 1468 LCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDK 1527
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP-EQECT 680
+V+ + N PLP E S A R++ PIIEEPA+P E+EC
Sbjct: 1528 RLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHA---RDVHANNTNPIIEEPASPREEECR 1584
Query: 681 EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAA 739
E+ E+DIED F ED DEIP IKLN+E F+ NL++ ++E + Q D++KALVA++ +AA
Sbjct: 1585 ELLENDIED-FDEDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAA 1643
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQ 797
SIP PKLKNV RLRTEH VYELPDSHPL++ +D+REPDDPSPYLLAIWTP E ++ +
Sbjct: 1644 SIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTRE 1703
Query: 798 LPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVN 857
P+ C + G LC + C +C S RE + VRGT+L+PCRTAMRGSFPLNGTYFQVN
Sbjct: 1704 APKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVN 1763
Query: 858 EVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
EVFADH SS NPI++PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1764 EVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 1816
>gi|220682961|gb|ACL80319.1| DNA glycosylase/lyase 701 [Oryza sativa Japonica Group]
Length = 1812
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/533 (66%), Positives = 419/533 (78%), Gaps = 11/533 (2%)
Query: 385 ETNPNISKSKKRKADGEKKNA-IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK + +K + DW+ LR++ N +ER DR DS+D+EA+RCA+V+
Sbjct: 1243 DTAAQASKPKKSRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQ 1302
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER++ FLNRLV +HGSIDLEWLRDVPPD AKDYLLSIRGLGLKS
Sbjct: 1303 RISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKS 1362
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPR
Sbjct: 1363 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPR 1422
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMR ECRHFASAFASARLALP P++K
Sbjct: 1423 LCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDK 1482
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP-EQECT 680
+V+ + N PLP E S A R++ PIIEEPA+P E+EC
Sbjct: 1483 RLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHA---RDVHANNTNPIIEEPASPREEECR 1539
Query: 681 EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAA 739
E+ E+DIED F ED DEIP IKLN+E F+ NL++ ++E + Q D++KALVA++ +AA
Sbjct: 1540 ELLENDIED-FDEDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAA 1598
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQ 797
SIP PKLKNV RLRTEH VYELPDSHPL++ +D+REPDDPSPYLLAIWTP E ++ +
Sbjct: 1599 SIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTRE 1658
Query: 798 LPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVN 857
P+ C + G LC + C +C S RE + VRGT+L+PCRTAMRGSFPLNGTYFQVN
Sbjct: 1659 APKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVN 1718
Query: 858 EVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
EVFADH SS NPI++PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1719 EVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 1771
>gi|218196882|gb|EEC79309.1| hypothetical protein OsI_20143 [Oryza sativa Indica Group]
Length = 1873
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/533 (66%), Positives = 419/533 (78%), Gaps = 11/533 (2%)
Query: 385 ETNPNISKSKKRKADGEKKNA-IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK + +K + DW+ LR++ N +ER DR DS+D+EA+RCA+V+
Sbjct: 1304 DTATQASKPKKSRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQ 1363
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER++ FLNRLV +HGSIDLEWLRDVPPD AKDYLLSIRGLGLKS
Sbjct: 1364 RISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKS 1423
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPR
Sbjct: 1424 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPR 1483
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGKVFCTKS PNCNACPMR ECRHFASAFASARLALP P++K
Sbjct: 1484 LCKLDQQTLYELHYQMITFGKVFCTKSTPNCNACPMRSECRHFASAFASARLALPSPQDK 1543
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP-EQECT 680
+V+ + N PLP E S A R++ PIIEEPA+P E+EC
Sbjct: 1544 RLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHA---RDVHANNTNPIIEEPASPREEECR 1600
Query: 681 EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAA 739
E+ E+DIED F ED DEIPTIKLN+E F+ NL++ ++E + Q D++KALVA++ +AA
Sbjct: 1601 ELLENDIED-FDEDTDEIPTIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAA 1659
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQ 797
SIP PKLKNV RLRTEH VYELPDSHPL++ +++REPDDPSPYLLAIWTP E ++ +
Sbjct: 1660 SIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALEQREPDDPSPYLLAIWTPDELKDTRE 1719
Query: 798 LPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVN 857
P+ C + G LC + C +C S RE + VRGT+L+PCRTAMRGSFPLNGTYFQVN
Sbjct: 1720 APKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVN 1779
Query: 858 EVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
EVFADH SS NPI++PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1780 EVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 1832
>gi|226499668|ref|NP_001146555.1| uncharacterized protein LOC100280151 [Zea mays]
gi|219887797|gb|ACL54273.1| unknown [Zea mays]
Length = 501
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/460 (73%), Positives = 381/460 (82%), Gaps = 3/460 (0%)
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH 513
MNNMLAER+K+FLNRLV +HGSIDLEWLRDV PDKAKD+LLSIRGLGLKSVECVRLLTLH
Sbjct: 1 MNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLH 60
Query: 514 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 573
H+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE IQKYLWPRLCKLDQRTLY
Sbjct: 61 HMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTLY 120
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
ELHYQ+ITFGKVFCTKSKPNCN+CPMR EC+HFASAFASARLALP PEEK +V+ P +
Sbjct: 121 ELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKCLVTLEDPNV 180
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQEC--TEITESDIEDAF 691
E + IN + E S+ G +PIIEEP +PE E E E IED F
Sbjct: 181 VEFSHQTYINSGSVGQLEWSANYPKHAVSGNHQPIIEEPLSPECETENIEAHEGAIEDFF 240
Query: 692 YEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNVS 750
E+ DEIPTI LNIEEFT NL+ YMQ +E++ DMSKALVA+ PDAASIP PKLKNV+
Sbjct: 241 CEESDEIPTINLNIEEFTQNLKDYMQANNVEIEYADMSKALVAITPDAASIPTPKLKNVN 300
Query: 751 RLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGK 810
RLRTEHQVYELPDSHPLLEG ++REPDDP PYLL+IWTPGETA SI P++ C S E+G+
Sbjct: 301 RLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSIDAPKTFCDSGETGR 360
Query: 811 LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPI 870
LC CFSCN++RE +Q VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADH SS NPI
Sbjct: 361 LCGSSICFSCNNIREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHCSSQNPI 420
Query: 871 DVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
DVPR W+W+LPRR VYFGTSV +IF+GL+TE IQ CFW+G
Sbjct: 421 DVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQRCFWRG 460
>gi|413945495|gb|AFW78144.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 909
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/532 (65%), Positives = 414/532 (77%), Gaps = 10/532 (1%)
Query: 385 ETNPNISKSKK-RKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK R + DWE LR++ ++RS +R DS+D+EA+RCA+V+
Sbjct: 343 DTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCADVR 402
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER+++FLNRLVR+HGSIDLEWLR +PPD AKDYLLSIRGLGLKS
Sbjct: 403 RISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLGLKS 462
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKYLWPR
Sbjct: 463 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYLWPR 522
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGKVFCTK +PNCNACPMR EC+HFASAFASARLALP P+E+
Sbjct: 523 LCKLDQQTLYELHYQMITFGKVFCTKRQPNCNACPMRSECKHFASAFASARLALPAPQEE 582
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGK-CEPIIEEPATP-EQECTE 681
S+V + P + + +N LP E S R + K EPIIEEPA+P E+ E
Sbjct: 583 SLVKLSNPFAFQNSSMHAMNSTHLPRLEGS--IHSREFLPKNSEPIIEEPASPREERPPE 640
Query: 682 ITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAAS 740
E+DIED FYED EIPTIKLN+E F NL++ ++E ELQ D++KALVA++ +AAS
Sbjct: 641 TMENDIED-FYED-GEIPTIKLNMEAFAQNLENCIKESNNELQSDDIAKALVAISTEAAS 698
Query: 741 IPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQL 798
IP PKLKNV RLRTEH VYELPD+HPLL+ G+D+RE DDP+PYLLAIWTP +
Sbjct: 699 IPVPKLKNVLRLRTEHYVYELPDAHPLLQQLGLDQREHDDPTPYLLAIWTPDGIKEITKT 758
Query: 799 PESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE 858
P+ C + G LC+ + C +C + +E S+ VRGT+L+PCRTAMRGSFPLNGTYFQVNE
Sbjct: 759 PKPCCDPQMGGDLCNNEMCHNCTAEKENQSRYVRGTILVPCRTAMRGSFPLNGTYFQVNE 818
Query: 859 VFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
VFADH SS NPI V RE LWNL RRMV+FGTSV +IFKGL TE IQ CFW+G
Sbjct: 819 VFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIFKGLRTEEIQQCFWRG 870
>gi|357152016|ref|XP_003575981.1| PREDICTED: uncharacterized protein LOC100830449 [Brachypodium
distachyon]
Length = 1717
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/539 (63%), Positives = 408/539 (75%), Gaps = 12/539 (2%)
Query: 379 AHKVYDETNPNISKSKKRKADGEKK-NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEAL 437
+H + SK KK + +K DW+ R++ + ERS +R DS+++EA+
Sbjct: 1123 SHNAVPDKAAQASKPKKTRTTNKKNMENFDWDKFRRQAYDDGHMNERSFERRDSVNWEAV 1182
Query: 438 RCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIR 497
RCA+V+ IS AI+ERGMNN+LAER+++FL RLVR+HGSIDLEWLRD+PPD AKDYLLSIR
Sbjct: 1183 RCADVQRISHAIRERGMNNVLAERIQNFLKRLVRDHGSIDLEWLRDIPPDSAKDYLLSIR 1242
Query: 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 557
GLGLKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQ
Sbjct: 1243 GLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQ 1302
Query: 558 KYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL 617
KYLWPRLCKLDQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASAFASARLAL
Sbjct: 1303 KYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLAL 1362
Query: 618 PGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP 675
P P+EKS+V S+ E N LP E S+ R+ EPI+EEPA+P
Sbjct: 1363 PAPQEKSLVKSSNQFSFENGGLPTRNSTVLPQLEGSTFG---RDFPANNSEPIVEEPASP 1419
Query: 676 -EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVA 733
E+EC E +DIED + D EIPTIKLN+E F NL++ ++E +LQ D++KALVA
Sbjct: 1420 REEECPETLVNDIED-YDVDTGEIPTIKLNMETFARNLENCIKESNNDLQFGDIAKALVA 1478
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEG--MDRREPDDPSPYLLAIWTPGE 791
++ AASIPAPKLKNV RLRTEH VYELPDSH L++ +D+REPDDPSPYLL IW +
Sbjct: 1479 ISTQAASIPAPKLKNVHRLRTEHYVYELPDSHSLVQQLELDQREPDDPSPYLLTIWMEDD 1538
Query: 792 TANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNG 851
+ +S C S+ C+ + C C RE S+ VRGT+L+PCRTAM+GSFPLNG
Sbjct: 1539 IKEMSKASKSCCDSEVETGFCNNE-CHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNG 1597
Query: 852 TYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
TYFQVNEVFADH SS +PI V RE LWNL RRMVYFGTSV SIFKGL+TE +Q CFW+G
Sbjct: 1598 TYFQVNEVFADHKSSHDPIYVAREQLWNLQRRMVYFGTSVPSIFKGLTTEKVQQCFWRG 1656
>gi|242090707|ref|XP_002441186.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
gi|241946471|gb|EES19616.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
Length = 1704
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/523 (64%), Positives = 396/523 (75%), Gaps = 44/523 (8%)
Query: 394 KKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG 453
K R A + DW+ LR++ + RS +R DS+D+EA+RCA+ + IS AI+ERG
Sbjct: 1181 KTRTATKKDAENFDWDKLRRQAYSEGQMKTRSVERRDSVDWEAVRCADAQRISHAIRERG 1240
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH 513
MNN+LAER+++FLNRLVR+HGSIDLEWLR +PPD AKDYLLSIRGLGLKSVECVRLLTLH
Sbjct: 1241 MNNILAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLGLKSVECVRLLTLH 1300
Query: 514 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 573
HLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQ+TLY
Sbjct: 1301 HLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYLWPRLCKLDQQTLY 1360
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
ELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASAFASARLALP P+EKS+V +
Sbjct: 1361 ELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKLSNQFA 1420
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATPEQEC-TEITESDIEDA 690
+ + +N LP E S + RE EPIIEEPA+P +E E E+DIED
Sbjct: 1421 FQNSSMHTMNSTHLPRLEGSLHS---REFLPKNSEPIIEEPASPREEGPPETIENDIED- 1476
Query: 691 FYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAASIPAPKLKNV 749
FYED EIPTIKLN+E F NL++ ++E ELQ D++KALVA++ +AASIP PKLKNV
Sbjct: 1477 FYED-GEIPTIKLNMEVFAQNLENCIKESNNELQSDDIAKALVAISTEAASIPVPKLKNV 1535
Query: 750 SRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
RLRTEH VYELPD+HPLL+ G+D+REPDDP+PYLLAIWTP
Sbjct: 1536 HRLRTEHYVYELPDAHPLLQQLGLDQREPDDPTPYLLAIWTPE----------------- 1578
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+E S+ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS
Sbjct: 1579 ----------------KENQSRYVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHRSSH 1622
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NPI V RE LWNL RRMV+FGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1623 NPIHVQREQLWNLQRRMVFFGTSVPTIFKGLTTEEIQQCFWRG 1665
>gi|222631769|gb|EEE63901.1| hypothetical protein OsJ_18726 [Oryza sativa Japonica Group]
Length = 1837
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/538 (63%), Positives = 409/538 (76%), Gaps = 31/538 (5%)
Query: 385 ETNPNISKSKKRKADGEKKNA-IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK + +K + DW+ LR++ N +ER DR DS+D+EA+RCA+V+
Sbjct: 1278 DTAAQASKPKKPRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQ 1337
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER++ FLNRLV +HGSIDLEWLRDVPPD AKDYLLSIRGLGLKS
Sbjct: 1338 RISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKS 1397
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPR
Sbjct: 1398 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPR 1457
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMR EC+HFASAFASARLALP P++K
Sbjct: 1458 LCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPSPQDK 1517
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI-------GKCEPIIEEPATP- 675
+V+ + +P+P + L ++ I PIIEEPA+P
Sbjct: 1518 RLVNMSN--------QFDFQNGTMPTPHSTPLLQLEGSIHARDVHANNTNPIIEEPASPR 1569
Query: 676 EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVAL 734
E+EC E+ E+DIED F ED DEIPTIKLN+E F NL++ ++E + Q D++KALVA+
Sbjct: 1570 EEECRELLENDIED-FDEDTDEIPTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAI 1628
Query: 735 NPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGET 792
+ +AASIP PKLKNV RLRTEH VYELPDSHPL++ +D+REPDDP+ E
Sbjct: 1629 SNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPN----------EL 1678
Query: 793 ANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGT 852
++ + P+ C + G LC + C +C S RE + VRGT+L+PCRTAMRGSFPLNGT
Sbjct: 1679 KDTREAPKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGT 1738
Query: 853 YFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
YFQVNEVFADH SS NPI++PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1739 YFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 1796
>gi|147785279|emb|CAN77395.1| hypothetical protein VITISV_035357 [Vitis vinifera]
Length = 1824
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/934 (46%), Positives = 535/934 (57%), Gaps = 129/934 (13%)
Query: 1 MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANE-SIQWHELLRHPG-SSQSSITPHE 58
MSLAA FP K N R T ILVEEPEVC E ++ W+E + + QSS+T H
Sbjct: 879 MSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNEKMSNQAVCDQSSMTLHH 938
Query: 59 PTEHQRVREMSG-----VGKTSLPEPHGIG-------LEEEIISSQDSLSSTILQSNGGI 106
E G VG + + + ++ SSQ+SL +I Q+ I
Sbjct: 939 TEEAVNSNGSYGNSRGTVGTVDISKDKMLDSTGGDRTAADDAASSQNSLDFSIAQTAEKI 998
Query: 107 RSCSGSNSEAED-SPPGCKLDN--GSANFQ---QVGNATLFQDFY-------SC------ 147
SCS SNSE ED P G L+N GS +F Q+ +T + + +C
Sbjct: 999 GSCSESNSEVEDIMPTGYGLNNFDGSTSFVGLLQMAESTRLHEVFCRSNINATCGANPKD 1058
Query: 148 INDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDY 207
+N+ S GY++ Q DG + + SSL T + SS+Y
Sbjct: 1059 VNNHSESMSGYNKRSQNMDG-----------LADCRSSLGVTIIP-----------SSNY 1096
Query: 208 EPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNG 267
H+ S +LE EG E+ +GE S IS + +S A+ + E + ++
Sbjct: 1097 HLHLNPNSGVLEVEGFEM-SGETRS-SEISKDQKCVSEQSGLTAESDNQAKDEKKLTESI 1154
Query: 268 LSTPEKMLSASPYVLLKKPTMQQPNAS--QTRSPPKYDQSCCDIYQHERRTFQCESISIA 325
+ P ++S +Q N +++S P D ES+
Sbjct: 1155 QAGP----TSSCENTFSDNNLQGENNKIIESQSSPVGDXKNV-----------VESVG-- 1197
Query: 326 EQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDE 385
Q + + + QN+ + S A + S + D K E E LS+ K +E
Sbjct: 1198 -QEQISRMQQSQNLMNISGKALDVIDXXSAFSNQTHIEDRK-SETGVKEHGLSSSKASNE 1255
Query: 386 TNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEI 445
+ SK+KK KA E+KN + W++LRKE Q N K+ER+ + MDSLD+EA+RC++V EI
Sbjct: 1256 IGVDTSKAKKGKARREEKNTLHWDNLRKEAQVNGRKRERTVNTMDSLDWEAVRCSDVNEI 1315
Query: 446 SEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVE 505
+ IKERGMNNMLAER+KDFLNRLVR+HGSIDLEWLRDVPPDKAK+YLLS RGLGLKSVE
Sbjct: 1316 ANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFRGLGLKSVE 1375
Query: 506 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 565
CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ
Sbjct: 1376 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ---------------------- 1413
Query: 566 KLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSI 625
L LYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL GPEE+SI
Sbjct: 1414 -LHLLELYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALTGPEERSI 1472
Query: 626 VSSTMPTMAERNPSVVIN-PMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITE 684
VS+ + NP V IN P + +E I CEPI+E PATPEQE +I E
Sbjct: 1473 VSTNANESMDGNPDVTINPLPLPPPLPQKQSSEANPGINNCEPIVEVPATPEQEHPQILE 1532
Query: 685 SDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAP 744
SDIED YEDPDEIPTIKLNIEEFT NLQ+YMQ MELQE DMSKALVAL P+ ASIP P
Sbjct: 1533 SDIEDTLYEDPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALTPEVASIPMP 1592
Query: 745 KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCR 804
KLKNVSRLRTEH V+ + L+ + P P L Q+P + +
Sbjct: 1593 KLKNVSRLRTEHHVWTKEN---LMIHVHTFSPFGPQVKL-------------QIPFNHLK 1636
Query: 805 SKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHD 864
+ + ++ M+ S+ + IPCRTAMRGSFPLNGTYFQVNEVFADHD
Sbjct: 1637 EXVAXRNLEDYV------MKRHASRAI-----IPCRTAMRGSFPLNGTYFQVNEVFADHD 1685
Query: 865 SSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGL 898
SSLNPIDVPR W+WNLPRR VYFGTS+ +IFKG
Sbjct: 1686 SSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGF 1719
>gi|224100667|ref|XP_002311968.1| predicted protein [Populus trichocarpa]
gi|222851788|gb|EEE89335.1| predicted protein [Populus trichocarpa]
Length = 411
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/381 (81%), Positives = 342/381 (89%), Gaps = 2/381 (0%)
Query: 530 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
LGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ+ITFGKVFCTK
Sbjct: 1 LGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 60
Query: 590 SKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPS 649
S+PNCNACPMR ECRHFASAF SARLALPGPE K I +ST+P M E++PS+VINPMPL
Sbjct: 61 SRPNCNACPMRAECRHFASAFTSARLALPGPETKDITTSTVPFMPEKSPSIVINPMPLLP 120
Query: 650 PEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFT 709
PE + V +IG CEPIIEEP TP+QE TE+ E+DIED F EDPDEIPTIKLN+EEFT
Sbjct: 121 PEDNQHKSVGFDIGSCEPIIEEPVTPDQEQTELAETDIED-FGEDPDEIPTIKLNMEEFT 179
Query: 710 VNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE 769
NLQ+Y+ MELQE DMSKALVAL+P+A SIP PKLKNVSRLRTEHQVYELPDSHPLL+
Sbjct: 180 ENLQNYIHSNMELQEYDMSKALVALDPNA-SIPTPKLKNVSRLRTEHQVYELPDSHPLLQ 238
Query: 770 GMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQ 829
GMD+REPDDPSPYLLAIWTPGETANSI+ PE +C+S+E KLC+EK CFSCNS+RE NSQ
Sbjct: 239 GMDKREPDDPSPYLLAIWTPGETANSIEPPEQQCQSREPNKLCNEKICFSCNSIREANSQ 298
Query: 830 TVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGT 889
TVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLNPIDVPR +WNLPRR+VYFGT
Sbjct: 299 TVRGTLLIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYFGT 358
Query: 890 SVSSIFKGLSTEGIQFCFWKG 910
SV SIFKGLSTEG+Q CFWKG
Sbjct: 359 SVPSIFKGLSTEGVQHCFWKG 379
>gi|138996990|dbj|BAF52857.1| repressor of silencing 2b [Nicotiana tabacum]
Length = 1673
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/445 (71%), Positives = 362/445 (81%), Gaps = 11/445 (2%)
Query: 384 DETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
D N N SK+KK + EK+N IDW+SLR E Q N K+E++ + +DSLD+EA+RCANV
Sbjct: 1224 DSVNDNPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKREKTANTLDSLDWEAVRCANVN 1282
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ERGMNN LAER+K+FLNR+V EHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKS
Sbjct: 1283 EIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKS 1342
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPR
Sbjct: 1343 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPR 1402
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQRTLYELHY +ITFGKVFCTKSKPNCNACP+RGECRHFASAFASARLALP PEEK
Sbjct: 1403 LCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPAPEEK 1462
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSP-------EKSSL---AEVRREIGKCEPIIEEPA 673
SIVS+T + NP +PLP P E L A + EPI+E PA
Sbjct: 1463 SIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKLINSAPIIEVPATPEPIVELPA 1522
Query: 674 TPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVA 733
TPEQE + E DIED ++EDP EIPTI+LN+ EFT NL+ Y++ MEL + ++S ALVA
Sbjct: 1523 TPEQEQIQAPEIDIEDTYFEDPCEIPTIELNMAEFTQNLKKYVKNNMELHQVEISNALVA 1582
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETA 793
L +AASIP PKLKNVSRLRTEHQVYELPDSHPLLEG+D+REPDDP YLLAIWTPGETA
Sbjct: 1583 LTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETA 1642
Query: 794 NSIQLPESRCRSKESGKLCDEKTCF 818
NS Q PE++C S+ESGKLC+ +T F
Sbjct: 1643 NSFQPPETQCNSQESGKLCENETMF 1667
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 1 MSLAARFPLKSNKRTCNIDG-TNILVEEPEVCICAN-ESIQWHE 42
MSLAA FPLK+ T +G T I++EEPE C SI+WHE
Sbjct: 925 MSLAAHFPLKTKSSTQKHEGRTAIIIEEPEACATDPIVSIRWHE 968
>gi|138996988|dbj|BAF52856.1| repressor of silencing 2a [Nicotiana tabacum]
Length = 1673
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/445 (71%), Positives = 362/445 (81%), Gaps = 11/445 (2%)
Query: 384 DETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
D N N SK+KK + EK+N IDW+SLR E Q N K+E++ + +DSLD+EA+RCANV
Sbjct: 1224 DSVNDNPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKREKTANTLDSLDWEAVRCANVN 1282
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ERGMNN LAER+K+FLNR+V EHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKS
Sbjct: 1283 EIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKS 1342
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPR
Sbjct: 1343 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPR 1402
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQRTLYELHY +ITFGKVFCTKSKPNCNACP+RGECRHFASAFASARLALP PEEK
Sbjct: 1403 LCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFASARLALPAPEEK 1462
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSP-------EKSSL---AEVRREIGKCEPIIEEPA 673
SIVS+T + NP +PLP P E L A + EPI+E PA
Sbjct: 1463 SIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKLINSAPIIEVPATPEPIVELPA 1522
Query: 674 TPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVA 733
TPEQE + E DIED ++EDP EIPTI+LN+ EFT NL+ Y++ MEL + ++S ALVA
Sbjct: 1523 TPEQEQIQAPEIDIEDTYFEDPCEIPTIELNMAEFTQNLKKYVKNNMELHQVEISNALVA 1582
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETA 793
L +AASIP PKLKNVSRLRTEHQVYELPDSHPLLEG+D+REPDDP YLLAIWTPGETA
Sbjct: 1583 LTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETA 1642
Query: 794 NSIQLPESRCRSKESGKLCDEKTCF 818
NS Q PE++C S+ESGKLC+ +T F
Sbjct: 1643 NSFQPPETQCNSQESGKLCENETMF 1667
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 1 MSLAARFPLKSNKRTCNIDG-TNILVEEPEVCICAN-ESIQWHE 42
MSLAA FPLK+ T +G T I++EEPE C SI+WHE
Sbjct: 925 MSLAAHFPLKTKSSTQKHEGRTAIIIEEPEACATDPIVSIRWHE 968
>gi|240255311|ref|NP_187612.5| protein demeter-like 2 [Arabidopsis thaliana]
gi|378405159|sp|Q9SR66.2|DML2_ARATH RecName: Full=DEMETER-like protein 2
gi|332641327|gb|AEE74848.1| protein demeter-like 2 [Arabidopsis thaliana]
Length = 1332
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/522 (62%), Positives = 384/522 (73%), Gaps = 23/522 (4%)
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+K ++DW+SLRKE + K+ER+ MD++D++ALRC +V +I+ I +RGMNNMLAER
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+K FLNRLV++HGSIDLEWLRDVPPDKAK+YLLSI GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPLQPLP+ LQ+HLLELYPVLES+QKYLWPRLCKLDQ+TLYELHY +IT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMIT 964
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTK KPNCNACPM+ ECRH++SA ASARLALP PEE S + + VV
Sbjct: 965 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1024
Query: 642 INPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED--------AFYE 693
+N P + E +R CEPIIEEPA+PE E E DIED E
Sbjct: 1025 VNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPE---PEYIEHDIEDYPRDKNNVGTSE 1080
Query: 694 DP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNV 749
DP D IPTI LN E T + + + +E S LV L+ AA+IP KLK
Sbjct: 1081 DPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIK 1134
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESG 809
+LRTEH V+ELPD H +LEG +RRE +D PYLLAIWTPGET NSIQ P+ RC ES
Sbjct: 1135 EKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESN 1194
Query: 810 K-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
LC+E CF CN RE SQTVRGT+LIPCRTAMRG FPLNGTYFQ NEVFADHDSS+N
Sbjct: 1195 NTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSIN 1254
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PIDVP E +W+L RR+ Y G+SVSSI KGLS E I++ F +G
Sbjct: 1255 PIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1296
>gi|357129088|ref|XP_003566199.1| PREDICTED: uncharacterized protein LOC100844361 [Brachypodium
distachyon]
Length = 1546
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 311/463 (67%), Positives = 363/463 (78%), Gaps = 21/463 (4%)
Query: 463 KDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 522
K FLNRLVR+HGSIDLEWLRD+PPD AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN
Sbjct: 1041 KSFLNRLVRDHGSIDLEWLRDIPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 1100
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITF 582
VGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKY+WPRLCKLDQ+TLYELHYQ+ITF
Sbjct: 1101 VGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYIWPRLCKLDQQTLYELHYQMITF 1160
Query: 583 GKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSST---------MPTM 633
GKVFCTKSKPNCNACPMR EC+HFASAFASARLALP P+EKS+V S+ +PT
Sbjct: 1161 GKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKSSNQFSFENSGLPTR 1220
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP-EQECTEITESDIEDA 690
S V++ LP E S+ R++ EPI+EEPA+P E+EC E E+DIED
Sbjct: 1221 NHAWNSTVLS--VLPQLEGSTYG---RDVLATYSEPIVEEPASPREEECPETLENDIED- 1274
Query: 691 FYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAASIPAPKLKNV 749
+ D EIPTIKLN+E F NL++ ++E +LQ D++KALVA++ +AASIP PKLKNV
Sbjct: 1275 YDADNGEIPTIKLNMEAFAQNLENCIKESNKDLQSDDIAKALVAISTEAASIPVPKLKNV 1334
Query: 750 SRLRTEHQVYELPDSHPLLEGMD--RREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
RLRTEH VYELPDSH L++ ++ RREPDDPSPYLL IW + + P+S C S+
Sbjct: 1335 RRLRTEHYVYELPDSHSLVQQLELARREPDDPSPYLLTIWMEDDIKEMSKAPKSCCDSQM 1394
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
C+ C C RE S+ VRGT+L+PCRTAM+GSFPLNGTYFQVNEVFADH SS
Sbjct: 1395 EADFCNNGKCHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNGTYFQVNEVFADHKSSH 1454
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
+PI V RE LW+L RRMVYFGTSVS+IFKGL+TE +Q CFW+G
Sbjct: 1455 DPIHVAREQLWSLQRRMVYFGTSVSTIFKGLTTEEVQQCFWRG 1497
>gi|26451047|dbj|BAC42629.1| unknown protein [Arabidopsis thaliana]
gi|28950995|gb|AAO63421.1| At5g04570 [Arabidopsis thaliana]
Length = 416
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/385 (78%), Positives = 335/385 (87%), Gaps = 6/385 (1%)
Query: 530 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLITFGKVFCTK
Sbjct: 1 MGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTK 60
Query: 590 SKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPS 649
S+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P E P V I + LP
Sbjct: 61 SRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPL 120
Query: 650 PEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNI 705
P + SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNI
Sbjct: 121 PLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNI 178
Query: 706 EEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSH 765
E+F + L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQVYELPDSH
Sbjct: 179 EQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSH 238
Query: 766 PLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRE 825
LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC CNS+RE
Sbjct: 239 RLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLRE 298
Query: 826 TNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMV 885
NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR V
Sbjct: 299 ANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTV 358
Query: 886 YFGTSVSSIFKGLSTEGIQFCFWKG 910
YFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 359 YFGTSVTSIFRGLSTEQIQFCFWKG 383
>gi|297734851|emb|CBI17085.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 313/526 (59%), Positives = 382/526 (72%), Gaps = 18/526 (3%)
Query: 389 NISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEA 448
N ++ K+ K + ++ ++ DW+SLR+ N G++ R D DSLD+EA+R ANV +++A
Sbjct: 357 NSNEGKRGKTNDKEDHSFDWDSLRR-FYSNRGRKSRIHDARDSLDWEAVRDANVTHVAKA 415
Query: 449 IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508
I RGMNN+LA R+KDFL+RLVR+HG +DLEWLRDVPP+KAKDYLLSIRGLGLKSVECVR
Sbjct: 416 ISTRGMNNVLAARIKDFLDRLVRDHGKLDLEWLRDVPPEKAKDYLLSIRGLGLKSVECVR 475
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
LLTLHH AFPVDTNVGRI VRLGWVPLQPLP + LH L+ YP +++IQKYLWPRLC LD
Sbjct: 476 LLTLHHHAFPVDTNVGRITVRLGWVPLQPLPSDVYLHSLDQYPPMDTIQKYLWPRLCTLD 535
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSS 628
Q+TLYELHYQ+ITFGKVFCTK P C+ACP+RG+C+H+AS AS + + P+E+ I
Sbjct: 536 QKTLYELHYQMITFGKVFCTKKNPYCDACPLRGDCKHYASVVASRFVCISAPKEEGI--- 592
Query: 629 TMPTMAERNPSVVINPMPLPSP---EKSSLAEVRREIGKCEPIIEEPATPEQECTEITES 685
P N VV N +PL S E + CEPIIE P +P + E
Sbjct: 593 --PNYVGSN-LVVDNHVPLVSVSILEDGPNYQPGGTYNNCEPIIEMPTSPRPKS---EEK 646
Query: 686 DIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDM-SKALVALNPDAASIPAP 744
DIED ED DEIPTI+L+ EEF +Q+ QE D S+ALV++ A SIP
Sbjct: 647 DIEDFCDEDFDEIPTIRLD-EEFGAGIQNCPHMYPTPQEEDHGSQALVSV---ATSIPTR 702
Query: 745 KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCR 804
KLKN+SRLRTEH VYELPDSH LL + RE DP P+L AIW+PGETA+S + P+ RC
Sbjct: 703 KLKNISRLRTEHHVYELPDSHHLLTEVSLRESCDPCPFLFAIWSPGETADSFEQPQRRCN 762
Query: 805 SKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHD 864
+ SG+LC ++TC CN+ RE +SQ +RGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD +
Sbjct: 763 LEGSGELCKDETCSFCNATREQDSQIIRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADDE 822
Query: 865 SSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
SS NPI V R +WNLPRRM YFGTS +SIF+GLS IQ CFW+G
Sbjct: 823 SSRNPIIVRRTEIWNLPRRMAYFGTSATSIFRGLSIMEIQNCFWQG 868
>gi|449456184|ref|XP_004145830.1| PREDICTED: uncharacterized protein LOC101216331 [Cucumis sativus]
Length = 1810
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/513 (57%), Positives = 369/513 (71%), Gaps = 25/513 (4%)
Query: 406 IDWESLRKEVQRNSGK----QERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+DW SLR++ K + RSRD MDS+D+EA+R A +I++AIKERG +N++A R
Sbjct: 1263 VDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNIIAGR 1322
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+K FL+R R HG IDLEWLR PP K+YLL I GLGLKSVEC+RLL L +AFPVD
Sbjct: 1323 IKQFLDRTARLHGCIDLEWLRHAPPKDVKEYLLEIDGLGLKSVECIRLLALQQVAFPVDI 1382
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPL+PLPE +Q+HLLE +P+++SIQKYLWPRL LDQRTLYELHYQLIT
Sbjct: 1383 NVGRIAVRLGWVPLEPLPEEVQMHLLETFPMMDSIQKYLWPRLSMLDQRTLYELHYQLIT 1442
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA----ERN 637
FGKVFCTK KPNCNACP+R +CRH+ASA+ASARLALPG +EK IVS+ + R
Sbjct: 1443 FGKVFCTKRKPNCNACPLRADCRHYASAYASARLALPGLQEKGIVSTMSSEKSFEGNTRA 1502
Query: 638 PSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDE 697
+ I+ P S E S+ CEPI+E P +PE E +DIED + D D+
Sbjct: 1503 SLLHIDANPF-SAECST--------DNCEPIVEAPPSPEPAHDESQLTDIEDLYEYDSDD 1553
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
+P I+L+ +FT + + + ALV L+P ASIP KLK++ RLRTEHQ
Sbjct: 1554 VPIIRLSSGQFTTTSLNCVDNSI--------GALVPLHPRVASIPMRKLKHIERLRTEHQ 1605
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPD HPLL ++RR+P+DP PYLL I +PGET +S + P + C +E G++C E +C
Sbjct: 1606 VYELPDIHPLLSKLERRDPNDPCPYLLCILSPGETVDSCEPPNTICMYREIGEICSEGSC 1665
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
SCN +R+ NS V GT+LIPCRTAMRG FPLNGTYFQVNEVFAD ++S NPI +PREW+
Sbjct: 1666 SSCNIVRQQNSGAVHGTILIPCRTAMRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWI 1725
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR+ YFGTS ++IF+GL E IQ+CF KG
Sbjct: 1726 WDLPRRIAYFGTSTTTIFRGLEKEDIQYCFQKG 1758
>gi|359479390|ref|XP_002270885.2| PREDICTED: DEMETER-like protein 3-like [Vitis vinifera]
Length = 1372
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 317/541 (58%), Positives = 384/541 (70%), Gaps = 29/541 (5%)
Query: 389 NISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEA 448
N ++ K+ K + ++ ++ DW+SLR+ N G++ R D DSLD+EA+R ANV +++A
Sbjct: 804 NSNEGKRGKTNDKEDHSFDWDSLRR-FYSNRGRKSRIHDARDSLDWEAVRDANVTHVAKA 862
Query: 449 IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508
I RGMNN+LA R+KDFL+RLVR+HG +DLEWLRDVPP+KAKDYLLSIRGLGLKSVECVR
Sbjct: 863 ISTRGMNNVLAARIKDFLDRLVRDHGKLDLEWLRDVPPEKAKDYLLSIRGLGLKSVECVR 922
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
LLTLHH AFPVDTNVGRI VRLGWVPLQPLP + LH L+ YP +++IQKYLWPRLC LD
Sbjct: 923 LLTLHHHAFPVDTNVGRITVRLGWVPLQPLPSDVYLHSLDQYPPMDTIQKYLWPRLCTLD 982
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS----------ARLALP 618
Q+TLYELHYQ+ITFGKVFCTK P C+ACP+RG+C+H+AS AS +L L
Sbjct: 983 QKTLYELHYQMITFGKVFCTKKNPYCDACPLRGDCKHYASVVASRLPLIKNGGDGQLDLA 1042
Query: 619 GPEEKSIVS---STMPTMAERNPSVVINPMPLPSP---EKSSLAEVRREIGKCEPIIEEP 672
P E + +P N VV N +PL S E + CEPIIE P
Sbjct: 1043 SPIENQPAAPKEEGIPNYVGSN-LVVDNHVPLVSVSILEDGPNYQPGGTYNNCEPIIEMP 1101
Query: 673 ATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDM-SKAL 731
+P + E DIED ED DEIPTI+L+ EEF +Q+ QE D S+AL
Sbjct: 1102 TSPRPKS---EEKDIEDFCDEDFDEIPTIRLD-EEFGAGIQNCPHMYPTPQEEDHGSQAL 1157
Query: 732 VALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLL--EGMDRREPDDPSPYLLAIWTP 789
V++ A SIP KLKN+SRLRTEH VYELPDSH LL GM RRE DP P+L AIW+P
Sbjct: 1158 VSV---ATSIPTRKLKNISRLRTEHHVYELPDSHHLLTERGM-RRESCDPCPFLFAIWSP 1213
Query: 790 GETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPL 849
GETA+S + P+ RC + SG+LC ++TC CN+ RE +SQ +RGTLLIPCRTAMRGSFPL
Sbjct: 1214 GETADSFEQPQRRCNLEGSGELCKDETCSFCNATREQDSQIIRGTLLIPCRTAMRGSFPL 1273
Query: 850 NGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWK 909
NGTYFQVNEVFAD +SS NPI V R +WNLPRRM YFGTS +SIF+GLS IQ CFW+
Sbjct: 1274 NGTYFQVNEVFADDESSRNPIIVRRTEIWNLPRRMAYFGTSATSIFRGLSIMEIQNCFWQ 1333
Query: 910 G 910
G
Sbjct: 1334 G 1334
>gi|449530536|ref|XP_004172250.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1176
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/513 (57%), Positives = 369/513 (71%), Gaps = 25/513 (4%)
Query: 406 IDWESLRKEVQRNSGK----QERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+DW SLR++ K + RSRD MDS+D+EA+R A +I++AIKERG +N++A R
Sbjct: 629 VDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNIIAGR 688
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+K FL+R R HG IDLEWLR PP K+YLL I GLGLKSVEC+RLL L +AFPVD
Sbjct: 689 IKQFLDRTARLHGCIDLEWLRHAPPKDVKEYLLEIDGLGLKSVECIRLLALQQVAFPVDI 748
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPL+PLPE +Q+HLLE +P+++SIQKYLWPRL LDQRTLYELHYQLIT
Sbjct: 749 NVGRIAVRLGWVPLEPLPEEVQMHLLETFPMMDSIQKYLWPRLSMLDQRTLYELHYQLIT 808
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA----ERN 637
FGKVFCTK KPNCNACP+R +CRH+ASA+ASARLALPG +EK IVS+ + R
Sbjct: 809 FGKVFCTKRKPNCNACPLRADCRHYASAYASARLALPGLQEKGIVSTMSSGKSFEGNTRA 868
Query: 638 PSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDE 697
+ I+ P S E S+ CEPI+E P +PE E +DIED + D D+
Sbjct: 869 SLLHIDANPF-SAECST--------DNCEPIVEAPPSPEPAHDESQLTDIEDLYEYDSDD 919
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
+P I+L+ +FT + + + ALV L+P ASIP KLK++ RLRTEHQ
Sbjct: 920 VPIIRLSSGQFTTTSLNCVDGSI--------GALVPLHPRVASIPMRKLKHIERLRTEHQ 971
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPD HPLL ++RR+P+DP PYLL I +PGET +S + P + C +E G++C E +C
Sbjct: 972 VYELPDIHPLLSKLERRDPNDPCPYLLCILSPGETVDSCEPPNTICMYREIGEICSEGSC 1031
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
SCN +R+ NS V GT+LIPCRTAMRG FPLNGTYFQVNEVFAD ++S NPI +PREW+
Sbjct: 1032 SSCNIVRQQNSGAVHGTILIPCRTAMRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWI 1091
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR+ YFGTS ++IF+GL E IQ+CF KG
Sbjct: 1092 WDLPRRIAYFGTSTTTIFRGLEKEDIQYCFQKG 1124
>gi|115464171|ref|NP_001055685.1| Os05g0445900 [Oryza sativa Japonica Group]
gi|113579236|dbj|BAF17599.1| Os05g0445900, partial [Oryza sativa Japonica Group]
Length = 473
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 303/436 (69%), Positives = 349/436 (80%), Gaps = 10/436 (2%)
Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 540
LRDVPPD AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPE
Sbjct: 1 LRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPE 60
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
SLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQ+ITFGKVFCTKSKPNCNACPMR
Sbjct: 61 SLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMR 120
Query: 601 GECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRR 660
ECRHFASAFASARLALP P++K +V+ + N PLP E S A R
Sbjct: 121 SECRHFASAFASARLALPSPQDKRLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHA---R 177
Query: 661 EI--GKCEPIIEEPATP-EQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQ 717
++ PIIEEPA+P E+EC E+ E+DIED F ED DEIP IKLN+E F+ NL++ ++
Sbjct: 178 DVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEIPIIKLNMEAFSQNLENCIK 236
Query: 718 E-KMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE--GMDRR 774
E + Q D++KALVA++ +AASIP PKLKNV RLRTEH VYELPDSHPL++ +D+R
Sbjct: 237 ESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQR 296
Query: 775 EPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGT 834
EPDDPSPYLLAIWTP E ++ + P+ C + G LC + C +C S RE + VRGT
Sbjct: 297 EPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGT 356
Query: 835 LLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSI 894
+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS NPI++PRE LWNL RRMVYFGTSV +I
Sbjct: 357 VLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTI 416
Query: 895 FKGLSTEGIQFCFWKG 910
FKGL+TE IQ CFW+G
Sbjct: 417 FKGLTTEEIQHCFWRG 432
>gi|6143875|gb|AAF04422.1|AC010927_15 hypothetical protein [Arabidopsis thaliana]
Length = 1309
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 306/522 (58%), Positives = 361/522 (69%), Gaps = 46/522 (8%)
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+K ++DW+SLRKE + K+ER+ MD++D++ALRC +V +I+ I +RGMNNMLAER
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+K FLNRLV++HGSIDLEWLRDVPPDKAK+YLLSI GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPLQPLP+ LQ+HLLE LYELHY +IT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLE-----------------------LYELHYHMIT 941
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTK KPNCNACPM+ ECRH++SA ASARLALP PEE S + + VV
Sbjct: 942 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1001
Query: 642 INPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED--------AFYE 693
+N P + E +R CEPIIEEPA+PE E E DIED E
Sbjct: 1002 VNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPE---PEYIEHDIEDYPRDKNNVGTSE 1057
Query: 694 DP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNV 749
DP D IPTI LN E T + + + +E S LV L+ AA+IP KLK
Sbjct: 1058 DPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIK 1111
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESG 809
+LRTEH V+ELPD H +LEG +RRE +D PYLLAIWTPGET NSIQ P+ RC ES
Sbjct: 1112 EKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESN 1171
Query: 810 K-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
LC+E CF CN RE SQTVRGT+LIPCRTAMRG FPLNGTYFQ NEVFADHDSS+N
Sbjct: 1172 NTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSIN 1231
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PIDVP E +W+L RR+ Y G+SVSSI KGLS E I++ F +G
Sbjct: 1232 PIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1273
>gi|138996994|dbj|BAF52858.1| repressor of silencing 3 [Nicotiana tabacum]
Length = 1662
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 300/465 (64%), Positives = 341/465 (73%), Gaps = 51/465 (10%)
Query: 384 DETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
D N N SK+KK + EK+N IDW+SLR E Q N K+ER+ + MDSLD+EA+RCANV
Sbjct: 1238 DSVNENPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKRERTANTMDSLDWEAVRCANVN 1296
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ IKERGMNN LAER+K+FLNR+V EHGSIDLEWLRDVPPDKAK+YLLSIRGLGLKS
Sbjct: 1297 EIAHTIKERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKS 1356
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPR
Sbjct: 1357 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPR 1416
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQRT ARLALP EEK
Sbjct: 1417 LCKLDQRTF----------------------------------------ARLALPAQEEK 1436
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSP-------EKSSL---AEVRREIGKCEPIIEEPA 673
SIVS+T + NP +PLP P E L A + + EPI+E PA
Sbjct: 1437 SIVSATENKASNNNPREKFTHLPLPLPPGNQQPVEHQKLINSAPIIEVLATPEPIVELPA 1496
Query: 674 TPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVA 733
TPEQE + E DIED +YEDP EIPTI++N+ EFT NL+ Y++ MEL + +MS ALVA
Sbjct: 1497 TPEQEQMQAPEIDIEDTYYEDPCEIPTIEVNMAEFTQNLKKYVENNMELHQVEMSNALVA 1556
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETA 793
L +AASIP PKLKNVSRLRTEHQVYELPDSHPLLEG+D+REPDDP YLLAIWTPGETA
Sbjct: 1557 LTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETA 1616
Query: 794 NSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIP 838
NS Q PE++C S+ESGKLC+ +TC SCNS+RE +SQTVRGTLLIP
Sbjct: 1617 NSFQPPETQCNSQESGKLCENETCSSCNSIREAHSQTVRGTLLIP 1661
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 1 MSLAARFPLKSNKRTCNIDG-TNILVEEPEVCICAN-ESIQWHE 42
MSLAA FPLK+ T +G T +++EEPEVC SI+WHE
Sbjct: 939 MSLAAHFPLKTKSSTQKHEGRTAVIIEEPEVCATDPIVSIRWHE 982
>gi|255573046|ref|XP_002527453.1| conserved hypothetical protein [Ricinus communis]
gi|223533188|gb|EEF34945.1| conserved hypothetical protein [Ricinus communis]
Length = 1712
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 292/523 (55%), Positives = 366/523 (69%), Gaps = 11/523 (2%)
Query: 396 RKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMN 455
RK KN + +S ++ R + RS DS+D+EA+R A EI++AIK RG +
Sbjct: 1158 RKTTKGTKNVVKEKSYWNDLGRKYSR-PRSSAATDSIDWEAVRQAPETEIADAIKSRGQH 1216
Query: 456 NMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
N++A ++K LNR++ HGSIDLEWLR P D K YLL I GLGLKSVEC+RLLTL+H
Sbjct: 1217 NIMARKIKKSLNRILDYHGSIDLEWLRHAPDDDVKVYLLEIEGLGLKSVECLRLLTLYHD 1276
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
AFPVDTNV RIAVRLGWVPL+PLP LQLHLLE YPV+++IQKYLWPRLCKLDQ+TLYEL
Sbjct: 1277 AFPVDTNVARIAVRLGWVPLEPLPGVLQLHLLEEYPVMDTIQKYLWPRLCKLDQKTLYEL 1336
Query: 576 HYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA- 634
HYQ+ITFGKVFCTK KPNC CPMR ECRH ASA AS L LPG ++ S +P M+
Sbjct: 1337 HYQMITFGKVFCTKLKPNCGVCPMRAECRHLASAIASENLCLPGIPKRGEERSKVPNMSL 1396
Query: 635 -----ERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED 689
+ N ++++NP + +E + E CEP+IEEP +PE +I + +I +
Sbjct: 1397 ESSAVDANDALIVNPTAVSLSGYVKASESKFETQSCEPLIEEPKSPE-PVADIEDFEIAN 1455
Query: 690 AF-YEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAASIPAPKLK 747
D +EIP I+L+ E F N+Q +M E + LQ S+ALV L+ + S+P KLK
Sbjct: 1456 GIDINDGEEIPIIQLSNEPFRANVQYFMDEYRNNLQTDSSSRALVPLSVNVDSVPVRKLK 1515
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
N+SRLRTEHQVYE+PD H LL G+ R + +D SPYLLAIWTPGE+ S Q PE RC S +
Sbjct: 1516 NISRLRTEHQVYEIPDDHELLIGLPRPDRNDQSPYLLAIWTPGESPASCQPPEKRCNS-Q 1574
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+LC ++TCF C S+ E ++TVRGT+L+PCRTAMRG FPLNGTYFQVNEVFADH+SS
Sbjct: 1575 GAELCKDETCFYCQSIWEERTETVRGTILVPCRTAMRGRFPLNGTYFQVNEVFADHESSY 1634
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
N I VPR +W L RR+VY GTS ++IFK S + IQ FWKG
Sbjct: 1635 NAIIVPRSSIWYLRRRIVYCGTSPNAIFKACSLKEIQENFWKG 1677
>gi|297833776|ref|XP_002884770.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
gi|297330610|gb|EFH61029.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1078
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/538 (56%), Positives = 364/538 (67%), Gaps = 58/538 (10%)
Query: 388 PNISKSKKRK---ADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
P SK KK+ A KK + DW+SLRK+ + K+ER+ MD++D++ALRC +V +
Sbjct: 548 PTTSKLKKKSTEPAKSNKKKSFDWDSLRKQAESGGRKRERTERTMDTVDWDALRCTDVNK 607
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I+ I +RGMNNMLAER+K FLNRLVR+HGSIDLEWLRD+ PD+AK+YLLSI GLGLKSV
Sbjct: 608 IANIIIKRGMNNMLAERIKAFLNRLVRKHGSIDLEWLRDIHPDQAKEYLLSINGLGLKSV 667
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
ECVRLL+LH +AFPVDTNVGRIAVRLGWVPLQPLP+ LQ+HLLELYPVLES+QKYLWPRL
Sbjct: 668 ECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRL 727
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624
CKLDQ+TLYELHY +ITFGKVFCTK KPNCNACPM+ ECRH+ASA ASARLALP PEE
Sbjct: 728 CKLDQKTLYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYASARASARLALPEPEESD 787
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITE 684
+ + + V+N P + E +R CEPIIEEPA+PE E E
Sbjct: 788 RTTVMVHERRYKRKPFVVNFRPSLFLFQEKEHEAQRS-QNCEPIIEEPASPE---PEYIE 843
Query: 685 SDIEDA------------FYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALV 732
DIE+ +E+ D IPTI LN E T +L + +E S+ LV
Sbjct: 844 RDIEEYPWNNNNVGTSKDPWENKDVIPTIMLNKEAGTSHL-------VVNKEAGTSQDLV 896
Query: 733 ALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGET 792
L+ AA+IP KLK +LRTEH VYELP H +LEG +R E DD PYLLAI TPGE
Sbjct: 897 VLSTYAAAIPRRKLKIKEKLRTEHNVYELPKYHSILEGFERHEDDDLVPYLLAICTPGE- 955
Query: 793 ANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGT 852
E + TVRGT+LIPCRTAMRG FPLNGT
Sbjct: 956 -------------------------------EEESHNTVRGTILIPCRTAMRGGFPLNGT 984
Query: 853 YFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
YFQ NEVFADH SS+NPI+VP + +W+L RR+ YFG+SVSSI KGLS + I+ F +G
Sbjct: 985 YFQTNEVFADHGSSINPIEVPTQSIWDLRRRIAYFGSSVSSICKGLSVKEIEDNFQEG 1042
>gi|125552526|gb|EAY98235.1| hypothetical protein OsI_20146 [Oryza sativa Indica Group]
Length = 1802
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/531 (57%), Positives = 366/531 (68%), Gaps = 52/531 (9%)
Query: 385 ETNPNISKSKKRKADGEKKNA-IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK + +K + DW+ LR++ N +ER DR DS+D+EA+RCA+V+
Sbjct: 1278 DTAAQASKPKKPRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQ 1337
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER++ FLNRLV +HGSIDLEWLRDVPPD AKDYLLSIRGLGLKS
Sbjct: 1338 RISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKS 1397
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPR
Sbjct: 1398 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPR 1457
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
LCKLDQ+TLYELHYQ+ITFGK C C ++F+S + +
Sbjct: 1458 LCKLDQQTLYELHYQMITFGK---------CKTC----------TSFSSGQKVGEYEQSF 1498
Query: 624 SIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATP-EQECT 680
+ TMPT + PL E S A R++ PIIEEPA+P E+EC
Sbjct: 1499 DFQNGTMPTP---------HSTPLLQLEGSIHA---RDVHANNTNPIIEEPASPREEECR 1546
Query: 681 EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAA 739
E+ E+DIED F ED DEIPTIKLN+E F NL++ ++E + Q D++KALVA++ +AA
Sbjct: 1547 ELLENDIED-FDEDTDEIPTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAA 1605
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLP 799
SIP PKLKNV RLRTEH V+ R SP+ E ++ + P
Sbjct: 1606 SIPVPKLKNVHRLRTEHYVF----------CSQLRTSRFTSPH-----ATDELKDTREAP 1650
Query: 800 ESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 859
+ C + G LC + C +C S RE + VRGT+L+PCRTAMRGSFPLNGTYFQVNEV
Sbjct: 1651 KPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEV 1710
Query: 860 FADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
FADH SS NPI++PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 1711 FADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 1761
>gi|218190787|gb|EEC73214.1| hypothetical protein OsI_07297 [Oryza sativa Indica Group]
Length = 1165
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 315/470 (67%), Gaps = 72/470 (15%)
Query: 392 KSKKRKADGEKK-NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
+ K R G K DW++LRKEV RN G ++RS D++D+EA
Sbjct: 735 RPKARNVRGRTKMKHYDWDNLRKEVLRNHGNRQRSDKAKDTIDWEA-------------- 780
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
DFLNRLVR+HGSIDLEWLRD+ PDKAKD+LLSIRGLGLKS ECVRLL
Sbjct: 781 -------------DFLNRLVRDHGSIDLEWLRDIEPDKAKDFLLSIRGLGLKSTECVRLL 827
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 828 TLHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYIWPRLCKLDQL 887
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
LYELHYQ+ITFGKVFC+KSKPNCN+CPMR EC+HFASAFASARLALPGP +K+
Sbjct: 888 ILYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKT-SKPEY 946
Query: 631 PTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDA 690
P AE + + P+ G+ P E E++IED
Sbjct: 947 PNDAESSHKKYTHSRPM---------------GQLSWNTNHPG----HVYEAREAEIEDF 987
Query: 691 FYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNV 749
F EDPDEIP I LN++EF NL+SY+ +E+++ DMS ALVA++P AAS+P KLKNV
Sbjct: 988 FSEDPDEIPIINLNVKEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNV 1047
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTP-------------------- 789
+RLRTEHQVYELPDSHPLLEG D+REPDDPSPYLL+IWTP
Sbjct: 1048 NRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIK 1107
Query: 790 ---GETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLL 836
GETA S P++ C SKE+GK C+ TCFSCNS RE SQ VRGTLL
Sbjct: 1108 ISTGETAQSTDAPKTFCNSKETGKFCESSTCFSCNSTREMQSQKVRGTLL 1157
>gi|115446213|ref|NP_001046886.1| Os02g0494700 [Oryza sativa Japonica Group]
gi|113536417|dbj|BAF08800.1| Os02g0494700 [Oryza sativa Japonica Group]
Length = 1648
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 277/472 (58%), Positives = 322/472 (68%), Gaps = 64/472 (13%)
Query: 392 KSKKRKADGEKK-NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
+ K R G K DW++LRKEV N G ++RS D++D+EA
Sbjct: 1206 RPKARNVRGRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA-------------- 1251
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
DFLNRLVR+HGSIDLEWLRD+ PDKAK +LLSIRGLGLKS ECVRLL
Sbjct: 1252 -------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLL 1298
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1299 TLHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQL 1358
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
LYELHYQ+ITFGKVFC+KSKPNCN+CPMR EC+HFASAFASARLALPGP +K+
Sbjct: 1359 ILYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKT-SKPEY 1417
Query: 631 PTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQE--CTEITESDIE 688
P AE + + P+ L+ G + EP+TPE E E E++IE
Sbjct: 1418 PNDAESSHKKYTHSRPM-----GQLSWNTNHPGH----VYEPSTPEPEPDIAEAREAEIE 1468
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLK 747
D F EDPDEIP I LN+EEF NL+SY+ +E+++ DMS ALVA++P AAS+P KLK
Sbjct: 1469 DFFSEDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLK 1528
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTP------------------ 789
NV+RLRTEHQVYELPDSHPLLEG D+REPDDPSPYLL+IWTP
Sbjct: 1529 NVNRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILM 1588
Query: 790 -----GETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLL 836
GETA S P++ C SKE+GKLC+ TCFSCNS RE SQ VRGTLL
Sbjct: 1589 IKISTGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1640
>gi|222622896|gb|EEE57028.1| hypothetical protein OsJ_06806 [Oryza sativa Japonica Group]
Length = 1615
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 314/470 (66%), Gaps = 72/470 (15%)
Query: 392 KSKKRKADGEKK-NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
+ K R G K DW++LRKEV N G ++RS D++D+EA
Sbjct: 1185 RPKARNVRGRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA-------------- 1230
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
DFLNRLVR+HGSIDLEWLRD+ PDKAK +LLSIRGLGLKS ECVRLL
Sbjct: 1231 -------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLL 1277
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1278 TLHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQL 1337
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
LYELHYQ+ITFGKVFC+KSKPNCN+CPMR EC+HFASAFASARLALPGP +K+
Sbjct: 1338 ILYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKT-SKPEY 1396
Query: 631 PTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDA 690
P AE + + P+ G+ P E E++IED
Sbjct: 1397 PNDAESSHKKYTHSRPM---------------GQLSWNTNHPG----HVYEAREAEIEDF 1437
Query: 691 FYEDPDEIPTIKLNIEEFTVNLQSYMQ-EKMELQECDMSKALVALNPDAASIPAPKLKNV 749
F EDPDEIP I LN+EEF NL+SY+ +E+++ DMS ALVA++P AAS+P KLKNV
Sbjct: 1438 FSEDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNV 1497
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTP-------------------- 789
+RLRTEHQVYELPDSHPLLEG D+REPDDPSPYLL+IWTP
Sbjct: 1498 NRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIK 1557
Query: 790 ---GETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLL 836
GETA S P++ C SKE+GKLC+ TCFSCNS RE SQ VRGTLL
Sbjct: 1558 ISTGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1607
>gi|357510919|ref|XP_003625748.1| DNA glycosylase [Medicago truncatula]
gi|355500763|gb|AES81966.1| DNA glycosylase [Medicago truncatula]
Length = 497
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/411 (60%), Positives = 289/411 (70%), Gaps = 73/411 (17%)
Query: 573 YELHYQLITFGKV--------------------------FCTKSKPNCNACPMRGECRHF 606
YELHYQLITFGKV FCTKSKPNCNACPMRGECRHF
Sbjct: 16 YELHYQLITFGKVNYISHASETDHILVKSSLNLNQCMQVFCTKSKPNCNACPMRGECRHF 75
Query: 607 ASAFASARLALPGPEEK---SIVSSTMPTMAERNPSVVINPMPLPSP------------- 650
ASAFASARLALPGPE+K ++V +T ++NPS +N +PL P
Sbjct: 76 ASAFASARLALPGPEQKEQKNLVITTGNNATDQNPSTTVNQLPLSLPGLEQKNIEITTGT 135
Query: 651 ----EKSSLA---------------------------EVRREIGKCEPIIEEPATPEQEC 679
+ SS+ E+ EI C+PIIEEP TPE EC
Sbjct: 136 DATDQNSSVVINQLPLSLSENKNQTEELQQTVAIRQLEMNSEINNCQPIIEEPTTPEPEC 195
Query: 680 TEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAA 739
+ ++E+DIED FYE+ +EIPTI L+IEEFT+NLQ+YMQE MELQE +MSKALVALN +AA
Sbjct: 196 SHVSENDIEDFFYEESNEIPTINLDIEEFTLNLQNYMQENMELQEGEMSKALVALNQEAA 255
Query: 740 SIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLP 799
IP KLKNVSRLRTEH VYELPDSHPLLEG ++REPDDP YLLAIWTPGETANSIQ P
Sbjct: 256 YIPTTKLKNVSRLRTEHSVYELPDSHPLLEGWEKREPDDPGKYLLAIWTPGETANSIQPP 315
Query: 800 ESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 859
+ RC +++ G+LC+E+ CFSCNS RE NSQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEV
Sbjct: 316 DRRCSAQDCGQLCNEEECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 375
Query: 860 FADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
FADH+SSLNPI VPR +WNL RR V+FGTSV+SIFKGL+T IQ CFW+G
Sbjct: 376 FADHESSLNPISVPRSLIWNLDRRTVHFGTSVTSIFKGLATPEIQQCFWRG 426
>gi|52354425|gb|AAU44533.1| hypothetical protein AT4G34060 [Arabidopsis thaliana]
Length = 1044
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/536 (48%), Positives = 345/536 (64%), Gaps = 18/536 (3%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW +LR+ + + E MDS+++ +R +
Sbjct: 479 EDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEM---HMDSVNWSDVRLSGQNV 535
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ IK+RG +L+ER+ FLN V ++G+IDLEWLR+ P K YLL I G+GLKS
Sbjct: 536 LETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSA 595
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
ECVRLL L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRL
Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRL 655
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624
CKL Q TLYELHYQ+ITFGKVFCTK+ PNCNACPM+ EC++FASA+ S+++ L PEEK
Sbjct: 656 CKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM 715
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEIT 683
+T M + V ++ + + ++ + C +P++E P++P E E T
Sbjct: 716 HEPNTF--MNAHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST 773
Query: 684 ESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQS--YMQEKMELQECDMSKALVALNPD 737
DIED Y+ +P I +++ +++ + +M + ++SKALV P+
Sbjct: 774 --DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPE 831
Query: 738 AASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
A IP K+K +RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PGET++
Sbjct: 832 NACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSS 891
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+ +C S + KLC K C C ++RE NS RGT+LIPCRTAMRG+FPLNGTYF
Sbjct: 892 SFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 855 QVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
Q NEVFADH++SLNPI RE L +R +Y G++V+SIFK L T I+ CFW G
Sbjct: 951 QTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTG 1006
>gi|79496905|ref|NP_195132.3| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|84028203|sp|O49498.2|DML3_ARATH RecName: Full=DEMETER-like protein 3
gi|332660916|gb|AEE86316.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 1044
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/536 (48%), Positives = 345/536 (64%), Gaps = 18/536 (3%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW +LR+ + + E MDS+++ +R +
Sbjct: 479 EDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEM---HMDSVNWSDVRLSGQNV 535
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ IK+RG +L+ER+ FLN V ++G+IDLEWLR+ P K YLL I G+GLKS
Sbjct: 536 LETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSA 595
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
ECVRLL L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRL
Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRL 655
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624
CKL Q TLYELHYQ+ITFGKVFCTK+ PNCNACPM+ EC++FASA+ S+++ L PEEK
Sbjct: 656 CKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM 715
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEIT 683
+T M + V ++ + + ++ + C +P++E P++P E E T
Sbjct: 716 HEPNTF--MNAHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST 773
Query: 684 ESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQS--YMQEKMELQECDMSKALVALNPD 737
DIED Y+ +P I +++ +++ + +M + ++SKALV P+
Sbjct: 774 --DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPE 831
Query: 738 AASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
A IP K+K +RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PGET++
Sbjct: 832 NACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSS 891
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+ +C S + KLC K C C ++RE NS RGT+LIPCRTAMRG+FPLNGTYF
Sbjct: 892 SFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 855 QVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
Q NEVFADH++SLNPI RE L +R +Y G++V+SIFK L T I+ CFW G
Sbjct: 951 QTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTG 1006
>gi|357495073|ref|XP_003617825.1| DNA glycosylase [Medicago truncatula]
gi|355519160|gb|AET00784.1| DNA glycosylase [Medicago truncatula]
Length = 1004
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 250/525 (47%), Positives = 333/525 (63%), Gaps = 56/525 (10%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
WE+LRK K ++ D DS+D+EA+R ANV E++ AIK+RG N++A +++ L
Sbjct: 454 WETLRKI----HSKSDQHIDHADSVDWEAVRDANVNEVAAAIKKRGQQNIIAYKIQVALK 509
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
+ HGS++LEWL+D+PP++AK+Y LSI GLGLKSVEC+RLLTL H++FPVD NVGRI
Sbjct: 510 GFMVNHGSMNLEWLKDIPPNEAKEYFLSIFGLGLKSVECLRLLTLQHISFPVDVNVGRIV 569
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
VRLGWVPLQPLPES+Q+H LE +P IQ+YLWPRLCKLD +TLYELHYQLITFGKVFC
Sbjct: 570 VRLGWVPLQPLPESIQIHNLEKFPDPIKIQQYLWPRLCKLDHQTLYELHYQLITFGKVFC 629
Query: 588 TKSKPNCNACPMRGECRHFASAFASARLALP--GPEEKSIVSSTMPTMAERNPSVVINPM 645
TK PNCNACPM+ C+++AS+ A +LALP ++SIV++ M +
Sbjct: 630 TKRNPNCNACPMKDGCKYYASSLARTKLALPPKSTTDQSIVATQMD-----------HCF 678
Query: 646 PLPSPEKSSLAEV-RREIGKCEPIIEEPATPEQECTEITESDIEDAFY------------ 692
P +S + + +E +CEPI+E PA+P E + E D Y
Sbjct: 679 PYSDYWSNSTSTLFTKESKECEPIVEMPASP--ELIDDDEEIYHDYTYESDEEDIESDEE 736
Query: 693 ------EDPDEIPTIKLNIEEFTVNLQSYMQEKMELQE-CDMSKALVALNPDAASIPAPK 745
ED ++IPT ++ +E + L Y E + S++LVA +P+A + K
Sbjct: 737 DIESDEEDIEDIPTFNISSQESSSCLPMYGNSFEEFDHGVNASQSLVAFHPNATNSHLSK 796
Query: 746 LKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRS 805
+KN SRL+TE VY L D+HPLL RE DDPSPYLL +W P E +S + ++
Sbjct: 797 MKNASRLKTERTVYVLTDNHPLLAEYPSREHDDPSPYLLVVWRPAELESSGESSKTDLHE 856
Query: 806 KESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDS 865
+ES + ++TV GTLLIPCRTAMR FPLNGTYFQVNEVFAD+ S
Sbjct: 857 EESSQ-----------------TETVPGTLLIPCRTAMRARFPLNGTYFQVNEVFADYAS 899
Query: 866 SLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PI VPR+W+W+L +++ YFGT SS+ +GLS E I+ F KG
Sbjct: 900 MKKPIHVPRKWIWSLKKQIAYFGTGASSMTRGLSMEEIKDFFCKG 944
>gi|302818184|ref|XP_002990766.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
gi|300141504|gb|EFJ08215.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
Length = 470
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/463 (56%), Positives = 314/463 (67%), Gaps = 38/463 (8%)
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH 513
MNN+LA RMK FL+R+ EHGSIDLEW+RDVPP AKD+LLSIRGLGLKSVEC+RLL L
Sbjct: 1 MNNILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALD 60
Query: 514 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 573
HLAFPVDTNVGRI VRLGWVP+QPLPE L+LHLLELYPV E++QKY+WPRLC LD+ TLY
Sbjct: 61 HLAFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYIWPRLCTLDRLTLY 120
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
ELHYQ+ITFGKVFCTK++PNCNACPMR ECRHFASA+ASARLALP P +
Sbjct: 121 ELHYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQCQQQGDK-AG 179
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEI------TESDI 687
++ V+ P P+ P ++L V KCEPIIEEP +PE E T D+
Sbjct: 180 PQQQEEVLTLPPPVSLP-PATLTNVVATPKKCEPIIEEPGSPEPEPESESCEGSSTCPDM 238
Query: 688 EDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLK 747
ED + E T+ LN+ E T Y SK L+ L P+ A IP PKLK
Sbjct: 239 EDLLFTQGSE--TLHLNLIEQTQAPPQYTVASAS------SKELMVLPPEFAYIPVPKLK 290
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
N+ RLRT H VYELPD HPL++ ++ RE DDP YLLA+W+ E + QL
Sbjct: 291 NIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDEQPQNSQL--------- 341
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+ + + + V+GTLLIPCRTAMRGSFPLNGTYFQVNEVFAD ++
Sbjct: 342 -------------ENQQRVDDEFVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFADSETGN 388
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
P++V R LWNL R+ VYFGTSV +IF+GL+ + +Q CFWKG
Sbjct: 389 FPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKG 431
>gi|302809902|ref|XP_002986643.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|302809904|ref|XP_002986644.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145531|gb|EFJ12206.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145532|gb|EFJ12207.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
Length = 469
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/463 (55%), Positives = 312/463 (67%), Gaps = 39/463 (8%)
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH 513
MNN+LA RMK FL+R+ EHGSIDLEW+RDVPP AKD+LLSIRGLGLKSVEC+RLL L
Sbjct: 1 MNNILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALD 60
Query: 514 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 573
HLAFPVDTNVGRI VRLGWVP+QPLPE L+LHLLELYPV E++QKY+WPRLC LD+ TLY
Sbjct: 61 HLAFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYVWPRLCTLDRLTLY 120
Query: 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
ELHYQ+ITFGKVFCTK++PNCNACPMR ECRHFASA+ASARLALP P +
Sbjct: 121 ELHYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQCEQQGDKAGA 180
Query: 634 AERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEI------TESDI 687
++ + P+ LP ++L V KCEPIIEEP +PE E T D+
Sbjct: 181 QQQEVLTLPPPVSLPP---ATLTNVVATPKKCEPIIEEPRSPEPEPESESCEGSSTCPDM 237
Query: 688 EDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLK 747
ED + E T+ LN+ E Y SK L+ L P+ A IP PKLK
Sbjct: 238 EDLLFTQGSE--TLHLNLIEQPQAPPQYTVASAS------SKELMVLPPEFAYIPVPKLK 289
Query: 748 NVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKE 807
N+ RLRT H VYELPD HPL++ ++ RE DDP YLLA+W+ E + QL
Sbjct: 290 NIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDEQPQNSQL--------- 340
Query: 808 SGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 867
+ + + + V+GTLLIPCRTAMRGSFPLNGTYFQVNEVFAD ++
Sbjct: 341 -------------ENQQRVDDEFVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFADSETGN 387
Query: 868 NPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
P++V R LWNL R+ VYFGTSV +IF+GL+ + +Q CFWKG
Sbjct: 388 FPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKG 430
>gi|186516091|ref|NP_001119112.1| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|332660917|gb|AEE86317.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/484 (47%), Positives = 309/484 (63%), Gaps = 18/484 (3%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW +LR+ + + E MDS+++ +R +
Sbjct: 479 EDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEM---HMDSVNWSDVRLSGQNV 535
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ IK+RG +L+ER+ FLN V ++G+IDLEWLR+ P K YLL I G+GLKS
Sbjct: 536 LETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSA 595
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
ECVRLL L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRL
Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRL 655
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624
CKL Q TLYELHYQ+ITFGKVFCTK+ PNCNACPM+ EC++FASA+ S+++ L PEEK
Sbjct: 656 CKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM 715
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEIT 683
+T M + V ++ + + ++ + C +P++E P++P E E T
Sbjct: 716 HEPNTF--MNAHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST 773
Query: 684 ESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQS--YMQEKMELQECDMSKALVALNPD 737
DIED Y+ +P I +++ +++ + +M + ++SKALV P+
Sbjct: 774 --DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPE 831
Query: 738 AASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
A IP K+K +RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PGET++
Sbjct: 832 NACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSS 891
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+ +C S + KLC K C C ++RE NS RGT+LIPCRTAMRG+FPLNGTYF
Sbjct: 892 SFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 855 QVNE 858
Q NE
Sbjct: 951 QTNE 954
>gi|115446223|ref|NP_001046891.1| Os02g0496500 [Oryza sativa Japonica Group]
gi|48716417|dbj|BAD23025.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|48716542|dbj|BAD23146.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|113536422|dbj|BAF08805.1| Os02g0496500 [Oryza sativa Japonica Group]
Length = 1207
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/529 (42%), Positives = 307/529 (58%), Gaps = 69/529 (13%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
E+K+ W+ LR+E + G + + DS D+EA+ A EI+ +I RG + ++A
Sbjct: 670 EEKDTSHWDKLREEAY-SKGYKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 728
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVD 520
R++ FL R+ ++HG+ DL+WLR VP + AK+YL+SI GLG KSV+C+RLL+L H FPVD
Sbjct: 729 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPVD 788
Query: 521 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLI 580
NV RI RLGWV LQPLP S + HL+ LYP++ +QKYLWPRLC + + LYELH +I
Sbjct: 789 VNVARIVTRLGWVKLQPLPFSAEFHLVGLYPIMRDVQKYLWPRLCTISKEKLYELHCLMI 848
Query: 581 TFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPE-------EKSIVSSTMPTM 633
TFGK CTK PNC ACP +C+++ S+ ARL+LP E E+ ++T +
Sbjct: 849 TFGKAICTKVSPNCRACPFSAKCKYYNSSL--ARLSLPPAEGHGHEYGEEQASTATPGRL 906
Query: 634 AERNPSVVINPMPLPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFY 692
N S + + P+ K ++ R I KCEPIIE P +PE E ES E Y
Sbjct: 907 LLSNDSHIAGFQQVCQPQIKINMPAGRESIYKCEPIIEIPPSPEH---EYEESPYEQELY 963
Query: 693 EDP-----DEIPTIKLNIE------EFTVNLQSYMQEKMELQECDMSKALVALNPDAASI 741
ED D IP ++ + E + TVN S+ + K L +N AS+
Sbjct: 964 EDDLCDIEDTIPELQYDFEIDLCSLKHTVNNGSWTP--------NSGKDLALINSQHASV 1015
Query: 742 PAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPES 801
+LKN+ RLRTEH Y LPD H +LE + R P+DP PYLL +
Sbjct: 1016 QNKRLKNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVV--------------- 1060
Query: 802 RCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFA 861
SC ++ TV+GT+LIPCRTA RG+FPLNGTYFQ +EVFA
Sbjct: 1061 ----------------ISC-----SDEHTVKGTILIPCRTATRGNFPLNGTYFQDHEVFA 1099
Query: 862 DHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
DH SS +PI +PRE +WNL R +VYFG+S+ SI KG + + I+ C+ KG
Sbjct: 1100 DHSSSRSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKG 1148
>gi|52353713|gb|AAU44279.1| unknow protein [Oryza sativa Japonica Group]
Length = 375
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/338 (60%), Positives = 248/338 (73%), Gaps = 10/338 (2%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNP 638
+ITFGKVFCTKSKPNCNACPMR ECRHFASAFASARLALP P++K +V+ +
Sbjct: 1 MITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLSNQFAFHNGT 60
Query: 639 SVVINPMPLPSPEKSSLAEVRREI--GKCEPIIEEPATPEQECTEITE-SDIEDAFYEDP 695
N PLP E S A R++ PIIEEPA+P +E +DIED F ED
Sbjct: 61 MPTPNSTPLPQLEGSIHA---RDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDT 116
Query: 696 DEIPTIKLNIEEFTVNLQSYMQE-KMELQECDMSKALVALNPDAASIPAPKLKNVSRLRT 754
DEIP IKLN+E F+ NL++ ++E + Q D++KALVA++ +AASIP PKLKNV RLRT
Sbjct: 117 DEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRT 176
Query: 755 EHQVYELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLC 812
EH VYELPDSHPL++ +D+REPDDPSPYLLAIWTP E ++ + P+ C + G LC
Sbjct: 177 EHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLC 236
Query: 813 DEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDV 872
+ C +C S RE + VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS NPI++
Sbjct: 237 SNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINI 296
Query: 873 PREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PRE LWNL RRMVYFGTSV +IFKGL+TE IQ CFW+G
Sbjct: 297 PREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRG 334
>gi|224068973|ref|XP_002326244.1| DNA glycosylase [Populus trichocarpa]
gi|222833437|gb|EEE71914.1| DNA glycosylase [Populus trichocarpa]
Length = 257
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/224 (82%), Positives = 197/224 (87%)
Query: 687 IEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKL 746
+ED F EDPDEIP IKLNIEEFT NLQ+YMQE MELQE DMSKALVAL +AASIP PKL
Sbjct: 1 MEDTFCEDPDEIPIIKLNIEEFTQNLQNYMQENMELQEADMSKALVALTAEAASIPVPKL 60
Query: 747 KNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSK 806
KNVSRLRTEHQVYELPDSHPLL+ +DRREPDDP YLLAIWTPGETANSIQ E C
Sbjct: 61 KNVSRLRTEHQVYELPDSHPLLQRLDRREPDDPCSYLLAIWTPGETANSIQPLERSCSLH 120
Query: 807 ESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 866
E GKLCDEKTCFSCN++RE NSQ VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS
Sbjct: 121 ECGKLCDEKTCFSCNNIREENSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 180
Query: 867 LNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
LNPIDVPR W+WNLPRR VYFGTS+ +IFKGL+T GIQ CFW+G
Sbjct: 181 LNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLTTAGIQHCFWRG 224
>gi|297802586|ref|XP_002869177.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
gi|297315013|gb|EFH45436.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
Length = 1072
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/544 (40%), Positives = 309/544 (56%), Gaps = 61/544 (11%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW++LRK + R + MDS+++ +R + K
Sbjct: 535 EEHENTAKRKNEKTGIMEDETVDWKTLRKMYTKEGS---RPKMHMDSVNWSDVRLSGQKV 591
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I+ RG +L+ER+ FLN V+ +G++DLEWLR+ P D K YLL I G+GLKS
Sbjct: 592 FETTIRRRGQFRILSERILKFLNDEVQHNGTLDLEWLRNAPSDLVKRYLLEIEGIGLKSA 651
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH-LLELYPVLESIQKYLWPR 563
ECVRLL L H AFPVDTNVGRIAVRLGWVPL+PLP +Q+H L +L ++ I+K +
Sbjct: 652 ECVRLLGLKHHAFPVDTNVGRIAVRLGWVPLEPLPNGVQMHQLFQLCFLINLIKKIHYTF 711
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
Y L + +F +VFCTK PNCNACPM+ EC++FASA+ S+++ L GPEEK
Sbjct: 712 TNN------YLLSIKTNSF-QVFCTKVIPNCNACPMKSECKYFASAYVSSKVLLEGPEEK 764
Query: 624 SIVSSTMPTMAERNPSV-------VINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPE 676
T ++ V +I P ++ C+P++E P++P
Sbjct: 765 MHEPDTFMNAYSQDADVDMTSNINLIEECVSPGCSDQAIC--------CKPLVEFPSSPR 816
Query: 677 QECTEITESDIEDAFYEDPDE----IPTIKLNIEEFTVNLQSYMQEKMEL---QECDMSK 729
E E T DIED + +P + +P I +++ N++ + + + + ++SK
Sbjct: 817 AEIPEST--DIEDIPFINPYQLYARVPKIDFDMDALKKNVEDALVKGGRMLSSSDEEISK 874
Query: 730 ALVALNPDAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAI 786
ALV L P+ A IP K+K RLRTEH VY LPD+H LL +RRE DDPSPYLLAI
Sbjct: 875 ALVVLTPENACIPIKPPRKMKYYDRLRTEHVVYVLPDNHELLHDFERRELDDPSPYLLAI 934
Query: 787 WTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGS 846
W PGET++S P+ +C S + KLC K+C C ++RE +S T RGT+L
Sbjct: 935 WQPGETSSSFIPPKKKCNS-DGSKLCKIKSCSYCWTIREQSSNTFRGTIL---------- 983
Query: 847 FPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFC 906
VFADH++SL PI PRE L +R +Y G+SV+SIF+ L T IQ C
Sbjct: 984 ------------VFADHETSLKPIVFPRELCDGLEKRALYCGSSVTSIFRFLDTRRIQLC 1031
Query: 907 FWKG 910
FW G
Sbjct: 1032 FWTG 1035
>gi|357142346|ref|XP_003572541.1| PREDICTED: protein ROS1-like [Brachypodium distachyon]
Length = 992
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/515 (42%), Positives = 290/515 (56%), Gaps = 61/515 (11%)
Query: 408 WESLRKEVQRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+ LR E R G RS R+ D +D+EA+ A + E+++ I RG + +LA R++ FL
Sbjct: 476 WDRLRGEACRK-GYDNRSETRITDKVDWEAVLHAPLIEVAKCIAGRGQHYLLALRIQAFL 534
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ ++HGS DL+WL+ VP + AK+YLLS+ GLG KSV+C+RLL+L AFPVD NV RI
Sbjct: 535 ARIKKDHGSFDLDWLKYVPRESAKNYLLSVNGLGAKSVDCIRLLSLKQKAFPVDVNVSRI 594
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RL WV L+ PE + HL++LYP+++ IQ YLWPRLC + + LYELH +ITFGKV
Sbjct: 595 VTRLEWVELECSPE--EFHLVDLYPLMKDIQTYLWPRLCTIGKEKLYELHCLMITFGKVI 652
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLA-------LPGPEEKSIVSSTMPTMAERNPS 639
CTK+ PNC ACP R CR++ S A + L PG E+ S+V+S + N S
Sbjct: 653 CTKAAPNCKACPFRARCRYYKSNLARSLLPPAEESVHGPGEEQTSMVTSERLLLP--NGS 710
Query: 640 VVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITES----DIEDAFYEDP 695
+ + K S R CEPIIE P +PE E + E DIED +
Sbjct: 711 CTPGHLVCQNQIKESKTAGRVPTRNCEPIIEVPPSPECEHEALDEQEQCLDIEDMMSDGE 770
Query: 696 DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTE 755
I L + V++ + + K LV N S +PKLKN RLRTE
Sbjct: 771 QYDAKINLCSYKPMVSIGCWTPNR--------GKDLVLSNSHHTSYQSPKLKNPGRLRTE 822
Query: 756 HQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEK 815
H Y LPD H +LE ++R P+DP PYLL + I P+
Sbjct: 823 HHAYVLPDDHVILEEFEKRVPEDPCPYLLVV---------IPCPD--------------- 858
Query: 816 TCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRE 875
+ V+GT+LIPCRTA RG+FPLNGTYFQ +EVFAD+ SS PI + RE
Sbjct: 859 ------------DEVVKGTMLIPCRTASRGNFPLNGTYFQDHEVFADYTSSRFPITIHRE 906
Query: 876 WLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
+W L R +VYFG+S+ SI KG + + I+ CF KG
Sbjct: 907 LIWELERCIVYFGSSIHSITKGQTRQDIEDCFKKG 941
>gi|168003630|ref|XP_001754515.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694136|gb|EDQ80485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 413
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 209/392 (53%), Positives = 257/392 (65%), Gaps = 27/392 (6%)
Query: 530 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
LGWVPL+PLPE LQLHLLELYPV +IQKYLWPRLCKLD +TLYELHYQ+I+FGKVFCTK
Sbjct: 1 LGWVPLEPLPEELQLHLLELYPVQATIQKYLWPRLCKLDHQTLYELHYQMISFGKVFCTK 60
Query: 590 SKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPS 649
SKPNCNACPMR EC+HFASA +SA+LALP PE P++ + P + S
Sbjct: 61 SKPNCNACPMRPECKHFASAVSSAKLALPAPERP-----------HDRPTLALPPGTISS 109
Query: 650 PEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFY--EDPDEIPTIKLNIEE 707
+ L R C+P +EEP TPE E DIED + E+ +E + L E
Sbjct: 110 SGEDYLRPPRTVSQYCQPFVEEPMTPESEANVEDLDDIEDYPFSVEEVEEDAVMNLYQES 169
Query: 708 FTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPL 767
+ + M S+ +V + +AASIP PKLKNV RLRT H VYELPD+HPL
Sbjct: 170 PSTVTEQSMSGDANPNGSSGSQEMVLVPLEAASIPVPKLKNVGRLRTVHYVYELPDNHPL 229
Query: 768 LEGMDRREPDDPSPYLLAIWTPGETANSI---------QLPESRCRSKESGKLCDEKTCF 818
L+G+D REPDDP YLLAIW+P I ++PES ++ +E+ F
Sbjct: 230 LDGLDSREPDDPCTYLLAIWSPVTRLVLIVAYLELSVGKVPESIPNINDNA---NEENPF 286
Query: 819 SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
+ S ++++ TLL+PCRTAM+GSFPLNGTYFQVNEVFADH SSL PI VPR LW
Sbjct: 287 A--SSGSEGDESIKATLLVPCRTAMQGSFPLNGTYFQVNEVFADHASSLQPILVPRTLLW 344
Query: 879 NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
NL RR V+FGTSV+SIF+G++ E IQ CFW+G
Sbjct: 345 NLRRRFVFFGTSVTSIFRGMTAEEIQACFWRG 376
>gi|413936930|gb|AFW71481.1| hypothetical protein ZEAMMB73_696780 [Zea mays]
Length = 650
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 210/512 (41%), Positives = 282/512 (55%), Gaps = 49/512 (9%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
A +W+ L++E + + + D +D+E++ A E+++ I RG +N+LA R+
Sbjct: 123 ASNWKELQEEAYKKGYNNKSQTETSDVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILA 182
Query: 465 FLNRLVR-EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
FL+ + + + GS DL+WLR V +KAK +LLSI G+G+KS +C+ LL+L H AFPVD NV
Sbjct: 183 FLDHVKKAQDGSFDLDWLRFVSREKAKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNV 242
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583
RI RLGWV LQPL HL++LYP+L+ +Q+YLWPRLC +D+ LYELH +ITFG
Sbjct: 243 ARIVTRLGWVKLQPL-NGADFHLIDLYPILDDVQRYLWPRLCTIDKEKLYELHCLMITFG 301
Query: 584 KVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVIN 643
KV C K PNC ACP C+++ S+ A L LP E+ ++M PS
Sbjct: 302 KVVCRKKNPNCGACPFSASCKYYNSSLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSS--Q 359
Query: 644 PMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYED-----PDEI 698
M SS I CEPI+E P +PE E E T ++ ED FYED D
Sbjct: 360 QMYRYQIAISSTTTETPPIHSCEPIVEMPPSPEYEYNE-TPNEQED-FYEDYACDIEDFA 417
Query: 699 PTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQV 758
P ++ + E + + + C K L +NP + + KLKN RLRTEH
Sbjct: 418 PGVQYDSEINICSNKHTLNNNSWTPNC--GKDLAVINPKCSFGQSKKLKNTGRLRTEHNA 475
Query: 759 YELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCF 818
Y LPD H +LE + R P D PYLL +
Sbjct: 476 YVLPDGHVILEEFEDRVPGDRCPYLLVV-------------------------------I 504
Query: 819 SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
SC + V+GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS NPI VPRE +
Sbjct: 505 SC-----PDDYKVKGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPITVPRECIG 559
Query: 879 NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
L R +VYFG+S+ SI KG + + IQ C +G
Sbjct: 560 MLERSIVYFGSSIHSITKGQTRQDIQECLKEG 591
>gi|383100759|emb|CCG47990.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 216/517 (41%), Positives = 295/517 (57%), Gaps = 63/517 (12%)
Query: 408 WESLRKEVQRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+ LRKE G S+ R+ D +++EA++ A+ ++++ I RG + +LA R++ FL
Sbjct: 431 WDKLRKEAY-GKGYDNGSKTRITDKVNWEAVQKASFVDVAKCIAGRGQHYLLALRIQAFL 489
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ ++HGS DL+WLR +P + AK YLLSI GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 490 TRIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARI 549
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH +ITFGKV
Sbjct: 550 VTRLQWVELQCCSE--EFHSVDLYPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVI 607
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTK PNCNACP RG+CR++ S R LP P E+ + T + ++ N
Sbjct: 608 CTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSC 664
Query: 647 LPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDI--EDAFYEDPDEIPTIKL 703
+PS + + S R+ CEPIIE P +PE E + E + ED + D +P +
Sbjct: 665 MPSHQIEESRTAGRQPSRSCEPIIEVPPSPEYEYEALDEQEYPNEDDLVDIEDIMPGVHY 724
Query: 704 NIEEFTVNLQSYMQEKMELQEC----DMSKALVALNPDAASIPAPKLKNVSRLRTEHQVY 759
++E +NL S K + C + K L N S K+K++ RLRTEH Y
Sbjct: 725 DVE---INLCS---NKPMVSNCSWTPNHGKDLALSNSQHTS---RKMKHIGRLRTEHLAY 775
Query: 760 ELPDSHPLLEGMDRREPDDPSPYLLAIW------TPGETANSIQLPESRCRSKESGKLCD 813
LPD HPLLE + R P+DPSPYLL + PG N +
Sbjct: 776 VLPDDHPLLEEFEERVPEDPSPYLLVLHPCPDNPPPGAVENCM----------------- 818
Query: 814 EKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVP 873
V+GT+LIPCRTA RG+FPLNGTYFQ +EVFAD SS PID
Sbjct: 819 -----------------VKGTILIPCRTASRGNFPLNGTYFQDHEVFADDSSSRLPIDFS 861
Query: 874 REWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
E L +L + +VYFG+S+ SI KG + + I+ C+ KG
Sbjct: 862 SECLNDLGKCIVYFGSSIHSITKGQTRQDIEDCYKKG 898
>gi|293331251|ref|NP_001168988.1| uncharacterized protein LOC100382817 [Zea mays]
gi|223974285|gb|ACN31330.1| unknown [Zea mays]
Length = 650
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 209/512 (40%), Positives = 281/512 (54%), Gaps = 49/512 (9%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
A +W+ L++E + + + D +D+E++ A E+++ I RG +N+LA R+
Sbjct: 123 ASNWKELQEEAYKKGYNNKSQTETSDVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILA 182
Query: 465 FLNRLVR-EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
FL+ + + + GS DL+WLR V +KAK +LLSI G+G+KS +C+ LL+L H AFPVD NV
Sbjct: 183 FLDHVKKAQDGSFDLDWLRFVSREKAKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNV 242
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583
RI RLGWV LQPL HL++LYP+L+ +Q+YLWPRLC +D+ LYE H +ITFG
Sbjct: 243 ARIVTRLGWVKLQPL-NGADFHLIDLYPILDDVQRYLWPRLCTIDKEKLYEPHCLMITFG 301
Query: 584 KVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVIN 643
KV C K PNC ACP C+++ S+ A L LP E+ ++M PS
Sbjct: 302 KVVCRKKNPNCGACPFSASCKYYNSSLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSS--Q 359
Query: 644 PMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYED-----PDEI 698
M SS I CEPI+E P +PE E E T ++ ED FYED D
Sbjct: 360 QMYRYQIAISSTTTETPPIHSCEPIVEMPPSPEYEYNE-TPNEQED-FYEDYACDIEDFA 417
Query: 699 PTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQV 758
P ++ + E + + + C K L +NP + + KLKN RLRTEH
Sbjct: 418 PGVQYDSEINICSNKHTLNNNSWTPNC--GKDLAVINPKCSFGQSKKLKNTGRLRTEHNA 475
Query: 759 YELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCF 818
Y LPD H +LE + R P D PYLL +
Sbjct: 476 YVLPDGHVILEEFEDRVPGDRCPYLLVV-------------------------------I 504
Query: 819 SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
SC + V+GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS NPI VPRE +
Sbjct: 505 SC-----PDDYKVKGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPITVPRECIG 559
Query: 879 NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
L R +VYFG+S+ SI KG + + IQ C +G
Sbjct: 560 MLERSIVYFGSSIHSITKGQTRQDIQECLKEG 591
>gi|4581149|gb|AAD24633.1| hypothetical protein [Arabidopsis thaliana]
Length = 1207
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 204/449 (45%), Positives = 272/449 (60%), Gaps = 82/449 (18%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K K +K E+K A DW+ LR+E Q +G +E++R MD++D++A+R A+VKE
Sbjct: 815 KEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKE------- 867
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
+AE +K RG+ K E ++ LT
Sbjct: 868 ------VAETIKS--------------------------------RGMNHKLAERIQYLT 889
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
L+ + + R+ G + L+ W R D +
Sbjct: 890 LNMKI--MQGFLDRLVNDHGSIDLE------------------------WLRDVPPD-KA 922
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMP 631
YELHYQ+ITFGKVFCTKSKPNCNACPM+GECRHFASAFASARLALP E+ M
Sbjct: 923 KYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEK------GMG 976
Query: 632 TMAERNPSVVINPMPLPSPEKSSL---AEVRREIGKCEPIIEEPATPEQECTEITESDIE 688
T ++NP + P P + S + +E +++ CEPIIEEPA+PE E E++ +DIE
Sbjct: 977 T-PDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIE 1035
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKN 748
+AF+EDP+EIPTI+LN++ FT NL+ M+ ELQ+ +MS ALVAL + AS+P PKLKN
Sbjct: 1036 EAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKN 1095
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKES 808
+S+LRTEH+VYELPD HPLL +++REPDDP YLLAIWTPGETA+SIQ S C + +
Sbjct: 1096 ISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQAN 1155
Query: 809 GKLCDEKTCFSCNSMRETNSQTVRGTLLI 837
G LCDE+TCFSCNS++ET SQ VRGT+L+
Sbjct: 1156 GMLCDEETCFSCNSIKETRSQIVRGTILV 1184
>gi|242077266|ref|XP_002448569.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
gi|241939752|gb|EES12897.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
Length = 901
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 211/518 (40%), Positives = 274/518 (52%), Gaps = 58/518 (11%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
A DW+ LR+E + + + D +D+E++ A E+++ I RG +N+L+ R+++
Sbjct: 383 ASDWKELREEAYKKGYNDKSGTETSDVVDWESVLNAPFSEVAKCIAVRGQHNILSVRIRE 442
Query: 465 FLNRLVR-EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
L+ + + + GS DL+WLR + +KAK LLSI G G+KSV+C+ LL+L H AFPVD NV
Sbjct: 443 LLDHVQKAQDGSFDLDWLRFISHEKAKKILLSIHGFGVKSVDCICLLSLRHRAFPVDVNV 502
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583
RI RLGWV LQPL HL+ LYP+L+ +Q+YLWPRLC +D+ LYELH +ITFG
Sbjct: 503 ARIVTRLGWVKLQPL-NGADFHLINLYPLLDDVQRYLWPRLCTIDKEKLYELHCLMITFG 561
Query: 584 KVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVIN 643
KV CTK PNC ACP G C ++ S A L LP E +A + +
Sbjct: 562 KVVCTKQNPNCRACPFSGSCIYYNSLLARKPLPLPEKHEYEQGEQQAKMIASGSCTPSFQ 621
Query: 644 PMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITES-----------DIEDAFY 692
M SS E I CEPIIE P +PE E DIED
Sbjct: 622 QMYQYQIPISSTTET-PPIHNCEPIIEMPPSPEYEHNRTPNEQENSYGDYYVCDIEDFAP 680
Query: 693 EDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRL 752
E I + + N S+ + K L +NP + + KLKN+ RL
Sbjct: 681 EGVQYDAEINICSSKRVPNSNSWTPSR--------GKDLAVINPKGSFVRNKKLKNIGRL 732
Query: 753 RTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLC 812
RTEH Y LPD H +LE + R P D PYLL +
Sbjct: 733 RTEHNAYVLPDDHRILEEFEDRVPGDTCPYLLVV-------------------------- 766
Query: 813 DEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDV 872
SC + TV GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS NPI +
Sbjct: 767 -----LSC-----PDDFTVEGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPITI 816
Query: 873 PREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PRE + L R +VYFG+S+ SI KG + E IQ CF KG
Sbjct: 817 PRECIGLLKRSIVYFGSSIHSITKGQTREDIQECFKKG 854
>gi|300681535|emb|CBH32632.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 213/517 (41%), Positives = 292/517 (56%), Gaps = 63/517 (12%)
Query: 408 WESLRKEVQRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+ LR E R G S+ R+ D +++EA++ A+ ++++ I RG + +LA R++ FL
Sbjct: 431 WDKLRDEAYRK-GYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFL 489
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ ++HGS DL+WLR +P + AK YLLSI GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 490 TRIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARI 549
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH +ITFGKV
Sbjct: 550 VTRLQWVELQCCSE--EFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVI 607
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTK PNCNACP RG+CR++ S R LP P E+ + T + ++ N
Sbjct: 608 CTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSS 664
Query: 647 LPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDI--EDAFYEDPDEIPTIKL 703
+PS + + S R+ CEPIIE P +PE E + E + ED + D + +
Sbjct: 665 IPSHQIEESRTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNEDDLVDIEDIMSGVHY 724
Query: 704 NIEEFTVNLQSYMQEKMELQEC----DMSKALVALNPDAASIPAPKLKNVSRLRTEHQVY 759
++E +NL S K + C + K L N S K+K++ RLRTEH Y
Sbjct: 725 DVE---INLCS---NKPTVSNCSWTPNRGKDLALSNSQHTS---RKMKHIGRLRTEHLAY 775
Query: 760 ELPDSHPLLEGMDRREPDDPSPYLLAIW------TPGETANSIQLPESRCRSKESGKLCD 813
LPD HPLLE + R P+DPSPYLL + PG N +
Sbjct: 776 VLPDGHPLLEEFEERVPEDPSPYLLVLHPCPDNPPPGAVQNCM----------------- 818
Query: 814 EKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVP 873
V+GT+LIPCRTA G+FPLNGTYFQ +EVFAD SS PI
Sbjct: 819 -----------------VKGTILIPCRTASTGNFPLNGTYFQDHEVFADDSSSRLPIVFS 861
Query: 874 REWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
E L +L + +VYFG+S+ SI KG + + I+ C+ KG
Sbjct: 862 SECLNDLGKCIVYFGSSIHSITKGQTRQDIEDCYKKG 898
>gi|413945496|gb|AFW78145.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 565
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 158/214 (73%), Positives = 183/214 (85%), Gaps = 1/214 (0%)
Query: 385 ETNPNISKSKK-RKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK R + DWE LR++ ++RS +R DS+D+EA+RCA+V+
Sbjct: 343 DTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCADVR 402
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
IS AI+ERGMNN+LAER+++FLNRLVR+HGSIDLEWLR +PPD AKDYLLSIRGLGLKS
Sbjct: 403 RISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLGLKS 462
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
VECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKYLWPR
Sbjct: 463 VECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYLWPR 522
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
LCKLDQ+TLYELHYQ+ITFGKVFCTK +PNCNAC
Sbjct: 523 LCKLDQQTLYELHYQMITFGKVFCTKRQPNCNAC 556
>gi|7406462|emb|CAB85564.1| putative protein [Arabidopsis thaliana]
Length = 234
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/201 (78%), Positives = 178/201 (88%)
Query: 710 VNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE 769
+ L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQVYELPDSH LL+
Sbjct: 1 MTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLD 60
Query: 770 GMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQ 829
GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC CNS+RE NSQ
Sbjct: 61 GMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQ 120
Query: 830 TVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGT 889
TVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFGT
Sbjct: 121 TVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGT 180
Query: 890 SVSSIFKGLSTEGIQFCFWKG 910
SV+SIF+GLSTE IQFCFWKG
Sbjct: 181 SVTSIFRGLSTEQIQFCFWKG 201
>gi|7406461|emb|CAB85563.1| putative protein [Arabidopsis thaliana]
Length = 555
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 235/568 (41%), Positives = 313/568 (55%), Gaps = 42/568 (7%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 11 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 70
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 71 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 130
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 131 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 190
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
E N S+ F Q P+N + SS YE T +L+ E + G
Sbjct: 191 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 244
Query: 232 SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
SW SIS + KN++ R P E G+ + STP ++ LS S
Sbjct: 245 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 299
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q + H ++TF + ++ +E+ + +QN+
Sbjct: 300 VQEHQDDTQHNQ----------QDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 348
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G + ++T D N N L+E NS + +A + Y ETN I + K
Sbjct: 349 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 407
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
KK W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 408 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 467
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 468 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 527
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLEL 549
NVGRIAVR+GWVPLQPLPESLQLHLLEL
Sbjct: 528 NVGRIAVRMGWVPLQPLPESLQLHLLEL 555
>gi|48716531|dbj|BAD23135.1| putative transcriptional activator DEMETER [Oryza sativa Japonica
Group]
Length = 1552
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 205/450 (45%), Positives = 252/450 (56%), Gaps = 92/450 (20%)
Query: 392 KSKKRKADGEKK-NAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIK 450
+ K R G K DW++LRKEV N G ++RS D++D+EA
Sbjct: 1182 RPKARNVRGRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA-------------- 1227
Query: 451 ERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510
DFLNRLVR+HGSIDLEWLRD+ PDKAK +LLSIRGLGLKS ECVRLL
Sbjct: 1228 -------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLL 1274
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 570
TLH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1275 TLHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQL 1334
Query: 571 TLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTM 630
LYELHYQ+ITFGKVFC+KSKPNCN+CPMR EC+HFASAFAS P+E I++ +
Sbjct: 1335 ILYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASE-----DPDEIPIINLNV 1389
Query: 631 PTMAERNPSVV-INPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED 689
A+ S + N + + A++ + P + + P + + E
Sbjct: 1390 EEFAQNLKSYIHANNIEIED------ADMSNALVAISP--QAASVPTSKLKNVNRLRTEH 1441
Query: 690 AFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNV 749
YE PD P L+ + Q + PD P+P L ++
Sbjct: 1442 QVYELPDSHPL-----------LEGFDQRE----------------PDD---PSPYLLSI 1471
Query: 750 ---SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSK 806
+L H + L L+ + GETA S P++ C SK
Sbjct: 1472 WTPGKLMCSHPTFTLIQV-----------------ILMIKISTGETAQSTDAPKTFCNSK 1514
Query: 807 ESGKLCDEKTCFSCNSMRETNSQTVRGTLL 836
E+GKLC+ TCFSCNS RE SQ VRGTLL
Sbjct: 1515 ETGKLCESSTCFSCNSTREMQSQKVRGTLL 1544
>gi|413925772|gb|AFW65704.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1522
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/205 (70%), Positives = 168/205 (81%), Gaps = 2/205 (0%)
Query: 368 IEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427
+ +S ++ + K + N SK+K R KK DW+SLRK+V N G ++RS D
Sbjct: 1320 VASDSTQKFVDTQKGPSKARQNGSKAKVRGR--PKKKTDDWDSLRKKVLSNGGDKQRSHD 1377
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
D++D+EA+R A V+EISE I+ERGMNNMLAER+K+FLNRLV +HGSIDLEWLRDV PD
Sbjct: 1378 ARDTVDWEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPD 1437
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KAKD+LLSIRGLGLKSVECVRLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLL
Sbjct: 1438 KAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLL 1497
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTL 572
E+YP+LE IQKYLWPRLCKLDQRTL
Sbjct: 1498 EMYPMLEHIQKYLWPRLCKLDQRTL 1522
>gi|357445859|ref|XP_003593207.1| Repressor of silencing [Medicago truncatula]
gi|355482255|gb|AES63458.1| Repressor of silencing [Medicago truncatula]
Length = 731
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 178/230 (77%), Gaps = 6/230 (2%)
Query: 384 DETNPNISKSKKR--KADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCAN 441
+ET+ + KSKK+ K KK WE+LRK R+ +R D +DS+D+EA+R A
Sbjct: 462 EETHHDTKKSKKQEEKMMILKKKRQKWEALRKIHSRS----DRHIDHVDSIDWEAVRNAK 517
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V E++EAIK RG +N++A++++ LN+ + HG+ DLEWL+ +PP++AK+YLL+I GLGL
Sbjct: 518 VGEVAEAIKMRGQHNIIAKKIQLALNKFLEHHGTTDLEWLKYIPPNEAKEYLLNIFGLGL 577
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
KSVEC+RLLTL H++FPVD NVGRI VRLGWVPLQPLPES+Q+H LE +P IQ+YLW
Sbjct: 578 KSVECLRLLTLQHISFPVDVNVGRIVVRLGWVPLQPLPESIQIHNLEQFPDPIKIQQYLW 637
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
PRLCKLD TLYELHYQLITFGKVFCTK PNCNACPM+ C+++AS+ A
Sbjct: 638 PRLCKLDHHTLYELHYQLITFGKVFCTKRNPNCNACPMKDNCKYYASSLA 687
>gi|300681534|emb|CBH32631.1| conserved hypothetical protein [Triticum aestivum]
Length = 840
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/387 (42%), Positives = 230/387 (59%), Gaps = 23/387 (5%)
Query: 408 WESLRKEVQRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+ LR E R G S+ R+ D +++EA++ A+ ++++ I RG + +LA R++ FL
Sbjct: 431 WDKLRDEAYRK-GYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFL 489
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ ++HGS DL+WLR +P + AK YLLSI GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 490 TRIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARI 549
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH +ITFGKV
Sbjct: 550 VTRLQWVELQCCSE--EFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVI 607
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTK PNCNACP RG+CR++ S R LP P E+ + T + ++ N
Sbjct: 608 CTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSS 664
Query: 647 LPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDI--EDAFYEDPDEIPTIKL 703
+PS + + S R+ CEPIIE P +PE E + E + ED + D + +
Sbjct: 665 IPSHQIEESRTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNEDDLVDIEDIMSGVHY 724
Query: 704 NIEEFTVNLQSYMQEKMELQECDMS----KALVALNPDAASIPAPKLKNVSRLRTEHQVY 759
++E +NL S K + C + K L N S K+K++ RLRTEH Y
Sbjct: 725 DVE---INLCS---NKPTVSNCSWTPNRGKDLALSNSQHTS---RKMKHIGRLRTEHLAY 775
Query: 760 ELPDSHPLLEGMDRREPDDPSPYLLAI 786
LPD HPLLE + R P+DPSPYLL +
Sbjct: 776 VLPDGHPLLEEFEERVPEDPSPYLLVL 802
>gi|168067245|ref|XP_001785533.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662839|gb|EDQ49643.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1894
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 234/719 (32%), Positives = 329/719 (45%), Gaps = 180/719 (25%)
Query: 205 SDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKN-ESYARAQQPAEDIGETMV 263
SD+ E+L+ + SE C+S S + SS K+ +SY + + + T+V
Sbjct: 996 SDWNESEVELFEILDMQASETTTHRCASPHSRAGFSSHEKDSKSYKQLKHKPSQL--TLV 1053
Query: 264 QQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESIS 323
++N + + K S + P M+ + C + H + E I
Sbjct: 1054 EKNRVCSEVKESSLEE---VANPVMETDIHQKNYVNDAEFDKCSAVENHR----EAEQIP 1106
Query: 324 IAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVY 383
A Q + + ++ ++L E NL L + I ++ VL H+
Sbjct: 1107 SASQWNGKNAVIQEKF--ANVLQENVTNLS--------LLGKEKILAATLRLVLGKHQTA 1156
Query: 384 DETNPNISKS-------------KKRKADGEKKNAIDWESLRKEVQRN------------ 418
E N +K+ +KR + + + + LR E + N
Sbjct: 1157 TERNKVAAKAFKNTKLRPGRNALRKRTDNYRYRQTVSFRLLRGEARANWEAGFVMKSQKD 1216
Query: 419 ---------SGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
+Q SRD + D +D+ A++ A+V E+++ IK RG +N LA R+K FL+
Sbjct: 1217 KWEPLRARIVAEQTYSRDTLTEDCVDWNAVQQASVHEVADVIKNRGQHNALAGRLKAFLD 1276
Query: 468 RLVR-EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ R ++G IDLEW+R +PP+ AK +LLS RG+GLKSVEC+RLL LHH +FPVDTNVGRI
Sbjct: 1277 RVHRDQNGVIDLEWIRKLPPEDAKAFLLSFRGVGLKSVECIRLLCLHHPSFPVDTNVGRI 1336
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
AVRLGWVPL+PLPE Q L LYELHY +ITFGKVF
Sbjct: 1337 AVRLGWVPLEPLPEETQ-----------------------LHLLELYELHYHMITFGKVF 1373
Query: 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMP 646
CTKSKPNCNACP+R EC+H+AS++ASA+L L PE+ ST+ + E +P+ P
Sbjct: 1374 CTKSKPNCNACPLRSECKHYASSYASAKLLLKWPEKPQNKQSTVFALPEHHPA----PQA 1429
Query: 647 LPSPEKSSLAEVRREIGKCEPIIEEPATPE------------------------------ 676
S L EV+ C PIIEEP +PE
Sbjct: 1430 ESVISDSRLTEVQS--VACLPIIEEPCSPEPCIDNIPDIEENPFRIDNNESNSPVQTGTG 1487
Query: 677 ---------------QECTEITESDIEDAFYEDPDEIPTIKLNI------------EEFT 709
+ TE T I +D DE+ K+ I EE
Sbjct: 1488 QPSMFSVIIGELRSILDVTETTLDLITGPVPDDFDELSATKMRISAFNSVIEVDENEEAV 1547
Query: 710 VNLQSYMQEKMELQECDM----------SKALV------------ALNPDAASIPAPKL- 746
N+Q +++ +EL E + + +LV L D +P+ +L
Sbjct: 1548 KNIQVTIEKNIELHETMVANMDITEEAPANSLVIDKDNQEDVASPVLTEDFNHLPSQELI 1607
Query: 747 --------------KNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGE 791
KNV RLRT H VYELPD+HPLL MD REPDDP YLLAIW+PG+
Sbjct: 1608 LLPPCADLAPAPKLKNVQRLRTVHYVYELPDNHPLLFAMDEREPDDPCFYLLAIWSPGK 1666
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 68/82 (82%)
Query: 829 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 888
+TVRGTLLIPC+TAMRG FPLNGTYFQVNEVFADH SSL PI VPR LW+L RR VYF
Sbjct: 1761 RTVRGTLLIPCKTAMRGWFPLNGTYFQVNEVFADHTSSLQPISVPRTLLWSLRRRFVYFS 1820
Query: 889 TSVSSIFKGLSTEGIQFCFWKG 910
T+VS++FK +S E I+ CF KG
Sbjct: 1821 TAVSNLFKDMSLEEIRCCFQKG 1842
>gi|45935143|gb|AAS79601.1| putative endonuclease III protein [Ipomoea trifida]
gi|118562896|dbj|BAF37786.1| hypothetical protein [Ipomoea trifida]
Length = 1687
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 191/295 (64%), Gaps = 36/295 (12%)
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G ML E + + + N+L +E N+V +L+ + + T+ ++ K +
Sbjct: 1055 GGMLEEVAKASANSNTFLNELE--VAMEDNTV--LLNNTLLEENTSSKSTEKKGKVTKMM 1110
Query: 402 KKNAIDWESLRKEV---QRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458
K +DWE LR+ R G MDS+D+ A+RCA V EI++ I+ RGMNN+L
Sbjct: 1111 PKPDVDWEELRRTYYNPNRTPGTL------MDSIDWNAVRCAPVGEIAKVIENRGMNNVL 1164
Query: 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
AE++K FL+RLV +HGSIDLEWL+DVPP+KAK++LLSIRG+GLKS ECVRLLTL H AFP
Sbjct: 1165 AEKIKAFLDRLVEDHGSIDLEWLKDVPPEKAKEFLLSIRGVGLKSTECVRLLTLGHHAFP 1224
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VDTN+ RI VRLGWVPL+PLP LQ+HL LDQ Y LHYQ
Sbjct: 1225 VDTNIARIVVRLGWVPLEPLPGDLQIHL--------------------LDQ---YVLHYQ 1261
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTM 633
LITFGKV CTK PNCNACPMR EC+HFASAFAS+RL L G EK +S++ P +
Sbjct: 1262 LITFGKVICTKKNPNCNACPMRAECKHFASAFASSRLRLRGAPEKPGMSNSQPML 1316
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 177/264 (67%), Gaps = 25/264 (9%)
Query: 656 AEVRREIGKCEPIIEEPATPEQE--CTEITESDIEDAFYE---DPDEIPTIKLNIEEFTV 710
A + E CEPIIE PA+PE E T E DI + +E D DEIP IKL+ EEF
Sbjct: 1403 ASLEPESQTCEPIIEVPASPEPEPESTVSLERDISNILHETEDDDDEIPHIKLDTEEFKR 1462
Query: 711 NLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEG 770
NL++++ + E +E +S ALVAL P +IPAPK+K+V RLRT H+VY +PDSHPLL G
Sbjct: 1463 NLKTFLNSEFEDEE--VSNALVALTPQDTTIPAPKIKSVERLRTRHRVYIVPDSHPLLIG 1520
Query: 771 MDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSC----NSMRET 826
+RRE DDP PYLLAIW P+ KES C + + ++ +ET
Sbjct: 1521 FERRELDDPCPYLLAIW-----------PQESLNVKES---CSQDSLICSGDLDSAFQET 1566
Query: 827 NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVY 886
N+QTV GT+LIPCRTA +GSFPLNGTYFQVNEVFADH+SS+ PI++PR+W+WNL +R +Y
Sbjct: 1567 NNQTVCGTILIPCRTANKGSFPLNGTYFQVNEVFADHESSVCPINIPRKWIWNLTQRYLY 1626
Query: 887 FGTSVSSIFKGLSTEGIQFCFWKG 910
G++ S+I +G+ + IQ CFW G
Sbjct: 1627 CGSTASAIARGMQMDEIQHCFWNG 1650
>gi|31296708|gb|AAP46637.1| PG3 [Hordeum vulgare]
Length = 689
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 174/458 (37%), Positives = 255/458 (55%), Gaps = 57/458 (12%)
Query: 359 ANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSK---KRKADGEKKNAIDWESLRKEV 415
A+ +++ P E+V + D++ I K K K A ++ W+ LR+E
Sbjct: 199 ASDSTNSVFTNPIECEEVDYGEEATDKSGKPICKEKTLRKFIATLRLEDTAHWDKLREEA 258
Query: 416 QRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
R G S+ R+ D +++EA++ A+ ++++ I RG + +LA R++ FL R+ ++HG
Sbjct: 259 YRK-GYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLTRIKKDHG 317
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
S DL+WLR +P + AK YL+SI GLG KSV+C+RLL+L H AFPVD NV RI RL WV
Sbjct: 318 SFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVPRIVTRLQWVE 377
Query: 535 LQPLPESLQLHLLELYPVLESIQKY-LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
LQ E + H ++LY ++ K LWPRLC +D+ LYELH +ITFGKV CTK PN
Sbjct: 378 LQCCSE--EFHSVDLYQLMPGCGKITLWPRLCTIDKEKLYELHCLMITFGKVICTKVDPN 435
Query: 594 CNACPMRGECRHFASAFASARLALP--------GPEEKSIVSSTMPTMAERNPSVVINPM 645
CNACP RG+CR++ S R LP G E+KS+V+S ER ++ N
Sbjct: 436 CNACPFRGDCRYYKSKL--TRPLLPPAEEHVRGGEEKKSMVTS------ER---LLSNGS 484
Query: 646 PLPSPE------KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIP 699
+PS + + S A R+ CEPIIE P +PE E + E + Y + D++
Sbjct: 485 CMPSLQVWQHQIEESRAAGRQPSRSCEPIIEVPPSPEYEYEALDEQE-----YPNEDDL- 538
Query: 700 TIKLNIEEFTVNLQSYMQEKMELQECDMSKALV---ALNPDAASIPA--------PKLKN 748
++IE+ + + +E+ C +K +V + P+ A LK+
Sbjct: 539 ---VDIEDI---MSKRVHYDVEINLCS-NKPMVSNCSWTPNHGKDWALSNSQHTSRNLKH 591
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAI 786
+ RLRTEH Y LPD H LLE ++ R P+DPSPYLL +
Sbjct: 592 IGRLRTEHLAYVLPDGHALLEEVEERVPEDPSPYLLVL 629
>gi|222628678|gb|EEE60810.1| hypothetical protein OsJ_14411 [Oryza sativa Japonica Group]
Length = 1072
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 245/521 (47%), Gaps = 116/521 (22%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
+K + W SL E RN G R D D +D+EAL A ++ + IK+RG ++ +A
Sbjct: 268 KKNDTSHWHSLYDEA-RNRG-YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 325
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAF--- 517
R+ FL R+ R+HG+IDLEWLR +P KAK YL S+ GLG KSV+C+RLL+L H AF
Sbjct: 326 RILAFLIRMKRDHGNIDLEWLRFIPRAKAKQYLHSVIGLGHKSVDCIRLLSLRHRAFPAS 385
Query: 518 ---------PVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
P+DTN+ I RLGWV L+PLP S + H ++D
Sbjct: 386 YLFSNQIILPIDTNIAHIVTRLGWVQLRPLPSSQEFH--------------------RVD 425
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSS 628
+ YELH Q+ITFGK C KSKPNC ACP EC+++ S F A LALP ++
Sbjct: 426 K---YELHCQMITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKD 482
Query: 629 TMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQEC-TEITESDI 687
A + + + + E+ CEP+IE P TP E E ++ D
Sbjct: 483 -----ANMDDPAKTYDLIFKAHQYQIEYGKNTEMNYCEPVIEIPPTPLHENRGETSDEDD 537
Query: 688 EDAFYEDPD--EIPTIKLNIEEF------TVNLQSYMQEKMELQECDM-SKALVALNPDA 738
E+ +Y D D +I ++E+ V+L+S Q K ++ +NP A
Sbjct: 538 ENGYYFDDDMEDIGRHDYDMEDIEHDYDMEVDLRSAKPTTNTSQAGATPGKEMIPINPRA 597
Query: 739 ASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQL 798
S P +K S LRTE+ +PD H +L+ D R P D +PYLL
Sbjct: 598 KS--TPMVKKFS-LRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLV------------- 641
Query: 799 PESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE 858
R + TV+ T+L
Sbjct: 642 ------------------------FRSFDEHTVKATIL---------------------- 655
Query: 859 VFADHDSSLNPIDVPREWLWNLPRR--MVYFGTSVSSIFKG 897
VFADH SS +PI++ R+ +W L R+ +V+FGT V S+ KG
Sbjct: 656 VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVTKG 696
>gi|224138760|ref|XP_002326683.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
gi|222834005|gb|EEE72482.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
Length = 210
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Query: 727 MSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAI 786
MS+ALV++ + APK+K V+ LRTEHQVYELPD+H +L G+D+RE DD PYLLAI
Sbjct: 1 MSQALVSVG--TTPLSAPKMKRVTSLRTEHQVYELPDNHEILVGLDKRERDDSVPYLLAI 58
Query: 787 WTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGS 846
W PGET NS Q PE C S+ S +LCD+KTCF+C +RE + VRGT+LIPCRTA++GS
Sbjct: 59 WQPGETPNSSQQPEKLCSSQGS-QLCDQKTCFACEGIREQQAGIVRGTILIPCRTALKGS 117
Query: 847 FPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFC 906
FPLNGTYFQVNEVFADH SS +PI VPRE LWNL +R +Y G+S SIF+ LS + I
Sbjct: 118 FPLNGTYFQVNEVFADHKSSYDPIIVPRELLWNLVKRTLYVGSSTKSIFRDLSLKEIHQN 177
Query: 907 FWKG 910
FW G
Sbjct: 178 FWTG 181
>gi|326503606|dbj|BAJ86309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 723
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 144/202 (71%), Gaps = 4/202 (1%)
Query: 408 WESLRKEVQRNSGKQERSRDRM-DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
W+ LR+E R G S+ R+ D +++EA++ A+ ++++ I RG + +LA R++ FL
Sbjct: 485 WDKLREEAYRK-GYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFL 543
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ ++HGS DL+WLR +P + AK YL+SI GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 544 TRIKKDHGSFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVARI 603
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH +ITFGKV
Sbjct: 604 VTRLQWVELQCCSE--EFHSVDLYPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVI 661
Query: 587 CTKSKPNCNACPMRGECRHFAS 608
CTK PNCNACP RG+CR++ S
Sbjct: 662 CTKVDPNCNACPFRGDCRYYKS 683
>gi|218190781|gb|EEC73208.1| hypothetical protein OsI_07289 [Oryza sativa Indica Group]
Length = 1111
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 179/345 (51%), Gaps = 68/345 (19%)
Query: 585 VFCTKSKPNCNACPMRGECRHFASAFASARLALPGPE-------EKSIVSSTMPTMAERN 637
CTK PNC ACP +C+++ S+ A RL+LP E E+ ++T + N
Sbjct: 757 AICTKVSPNCRACPFSAKCKYYNSSLA--RLSLPPAEGHGHEYGEEQASTATPGRLLLSN 814
Query: 638 PSVVINPMPLPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDP- 695
S + + P+ K ++ R I KCEPIIE P +PE E ES E YED
Sbjct: 815 DSHIAGFQQVCQPQIKINMPAGRESIYKCEPIIEIPPSPEHE---YEESPYEQELYEDDL 871
Query: 696 ----DEIPTIKLNIE------EFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPK 745
D IP ++ + E + TVN S+ + K L +N AS+ K
Sbjct: 872 CDIEDTIPELQYDFEIDLCSLKHTVNNGSWTP--------NSGKDLALINSQHASVQNKK 923
Query: 746 LKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRS 805
LKN+ RLRTEH Y LPD H +LE + R P+DP PYLL +
Sbjct: 924 LKNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVV------------------- 964
Query: 806 KESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDS 865
SC ++ TV+GT+LIPCRTA RG+FPLNGTYFQ +EVFADH S
Sbjct: 965 ------------ISC-----SDEHTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSS 1007
Query: 866 SLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
S +PI +PRE +WNL R +VYFG+S+ SI KG + + I+ C+ KG
Sbjct: 1008 SRSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKG 1052
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
E+K+ W+ LR+E + G + + + DS D+EA+ A EI+ +I RG + ++A
Sbjct: 640 EEKDTSHWDKLREEAY-SKGYKIKGTGKSDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 698
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPV 519
R++ FL R+ ++HG+ DL+WLR VP + AK+YL+SI GLG KSV+C+RLL+L H FP
Sbjct: 699 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 757
>gi|224068969|ref|XP_002326243.1| predicted protein [Populus trichocarpa]
gi|222833436|gb|EEE71913.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 215 bits (547), Expect = 1e-52, Method: Composition-based stats.
Identities = 97/111 (87%), Positives = 107/111 (96%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
MDSLD+EA+RCA+V EI+ IKERGMNN+LAER+K+ LNRLVREHGSIDLEWLRD+PPDK
Sbjct: 1 MDSLDWEAVRCADVNEIANTIKERGMNNILAERIKNLLNRLVREHGSIDLEWLRDIPPDK 60
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
AK+YLLSIRGLGLKSVEC+RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP
Sbjct: 61 AKEYLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 111
>gi|224100671|ref|XP_002311969.1| predicted protein [Populus trichocarpa]
gi|222851789|gb|EEE89336.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 214 bits (545), Expect = 2e-52, Method: Composition-based stats.
Identities = 99/108 (91%), Positives = 104/108 (96%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
DSLDYEA+RCA V EISEAIKERGMN +LAER+++FLNRLVREHGSIDLEWLRDVPP KA
Sbjct: 1 DSLDYEAVRCAGVNEISEAIKERGMNKILAERIQEFLNRLVREHGSIDLEWLRDVPPGKA 60
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP
Sbjct: 61 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 108
>gi|222622899|gb|EEE57031.1| hypothetical protein OsJ_06813 [Oryza sativa Japonica Group]
Length = 1051
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 179/345 (51%), Gaps = 68/345 (19%)
Query: 585 VFCTKSKPNCNACPMRGECRHFASAFASARLALPGPE-------EKSIVSSTMPTMAERN 637
CTK PNC ACP +C+++ S+ A RL+LP E E+ ++T + N
Sbjct: 697 AICTKVSPNCRACPFSAKCKYYNSSLA--RLSLPPAEGHGHEYGEEQASTATPGRLLLSN 754
Query: 638 PSVVINPMPLPSPE-KSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDP- 695
S + + P+ K ++ R I KCEPIIE P +PE E ES E YED
Sbjct: 755 DSHIAGFQQVCQPQIKINMPAGRESIYKCEPIIEIPPSPEHE---YEESPYEQELYEDDL 811
Query: 696 ----DEIPTIKLNIE------EFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPK 745
D IP ++ + E + TVN S+ + K L +N AS+ +
Sbjct: 812 CDIEDTIPELQYDFEIDLCSLKHTVNNGSWTP--------NSGKDLALINSQHASVQNKR 863
Query: 746 LKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRS 805
LKN+ RLRTEH Y LPD H +LE + R P+DP PYLL +
Sbjct: 864 LKNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVV------------------- 904
Query: 806 KESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDS 865
SC ++ TV+GT+LIPCRTA RG+FPLNGTYFQ +EVFADH S
Sbjct: 905 ------------ISC-----SDEHTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSS 947
Query: 866 SLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
S +PI +PRE +WNL R +VYFG+S+ SI KG + + I+ C+ KG
Sbjct: 948 SRSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKG 992
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
E+K+ W+ LR+E + G + + DS D+EA+ A EI+ +I RG + ++A
Sbjct: 580 EEKDTSHWDKLREEAY-SKGYKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 638
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPV 519
R++ FL R+ ++HG+ DL+WLR VP + AK+YL+SI GLG KSV+C+RLL+L H FP
Sbjct: 639 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 697
>gi|14021063|dbj|BAB47587.1| putative FPPsynthase1 [Euphorbia tirucalli]
Length = 119
Score = 211 bits (538), Expect = 1e-51, Method: Composition-based stats.
Identities = 95/108 (87%), Positives = 104/108 (96%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D LD+EA+RCA+V EI+ IKERGMNN+LA+R+KDFLNRLVREHG+IDLEWLRDVPPDKA
Sbjct: 12 DYLDWEAVRCADVDEIANTIKERGMNNVLAKRIKDFLNRLVREHGNIDLEWLRDVPPDKA 71
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
K+YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP
Sbjct: 72 KEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 119
>gi|2911056|emb|CAA17566.1| hypothetical protein [Arabidopsis thaliana]
gi|7270355|emb|CAB80123.1| hypothetical protein [Arabidopsis thaliana]
Length = 917
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 37/282 (13%)
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VDTNVGRIAVRLG VPL+PLP +Q+H Q YELHYQ
Sbjct: 625 VDTNVGRIAVRLGLVPLEPLPNGVQMH-----------------------QLFEYELHYQ 661
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNP 638
+ITFGKVFCTK+ PNCNACPM+ EC++FASA+ S+++ L PEEK +T M +
Sbjct: 662 MITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKMHEPNTF--MNAHSQ 719
Query: 639 SVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEITESDIEDA----FYE 693
V ++ + + ++ + C +P++E P++P E E T DIED Y+
Sbjct: 720 DVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST--DIEDVPFMNLYQ 777
Query: 694 DPDEIPTIKLNIEEFTVNLQS--YMQEKMELQECDMSKALVALNPDAASIPAP---KLKN 748
+P I +++ +++ + +M + ++SKALV P+ A IP K+K
Sbjct: 778 SYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKY 837
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPG 790
+RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PG
Sbjct: 838 YNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPG 879
>gi|357445861|ref|XP_003593208.1| Transcriptional activator DEMETER [Medicago truncatula]
gi|355482256|gb|AES63459.1| Transcriptional activator DEMETER [Medicago truncatula]
Length = 251
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 150/245 (61%), Gaps = 34/245 (13%)
Query: 664 KCEPIIEEPATPEQECTEITESDIEDAFY-------EDPDEIPTIKLNIEE--FTVNLQS 714
+CEPI+E PA+PE E TE+ D E +Y ED +++ T+ L+IE F+ +
Sbjct: 29 ECEPIVEMPASPELESTELI--DDEKMYYDYVVENDEDIEDMMTLNLSIESSCFSKICDN 86
Query: 715 YMQEKMELQECDMS--KALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMD 772
QE + DM+ +LVAL+P+A K+KN SRL+TE VY L D+HPLL
Sbjct: 87 SFQEF----DHDMTAPTSLVALHPNATINRLSKMKNASRLKTERLVYVLTDNHPLLTEYP 142
Query: 773 RREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVR 832
RE DDPSPYLL IW P E +S + ++ +ES + ++TV
Sbjct: 143 PREHDDPSPYLLVIWLPDELESSDESSKTDLHEEESSQ-----------------TKTVL 185
Query: 833 GTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVS 892
GTLLIPCRTAM+ FPLNGTYFQVNEVFAD+ S + PI+VPR+W+W+L +R+ YFGT S
Sbjct: 186 GTLLIPCRTAMKACFPLNGTYFQVNEVFADYASMIQPINVPRQWIWSLEKRITYFGTGTS 245
Query: 893 SIFKG 897
+I +G
Sbjct: 246 TITRG 250
>gi|168050578|ref|XP_001777735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670836|gb|EDQ57397.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1992
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 119/146 (81%), Gaps = 3/146 (2%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
WE+LR +V ++ +++ S DS+D+EA+R A+V +++ IKERGMNN+L+ R+K L+
Sbjct: 1366 WEALRAKVLSDNFEKDYSIS--DSVDWEAVRLADVAVVADLIKERGMNNILSGRIKSLLD 1423
Query: 468 RLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R+ R+ GS+DLEW+R + P ++++L+++RGLG+KSVEC+RLLTLHH +FPVDTNVGRI
Sbjct: 1424 RIYRDQDGSLDLEWIRKLSPIDSQNFLINVRGLGIKSVECIRLLTLHHPSFPVDTNVGRI 1483
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPV 552
VRLGWVPL+PLPE ++LHLLE+Y V
Sbjct: 1484 LVRLGWVPLEPLPEKIRLHLLEMYFV 1509
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 114/216 (52%), Gaps = 62/216 (28%)
Query: 728 SKALVALNPDAASIPAPKLKNVSRLRTEHQVY---------------------------- 759
S+ L+ L P AAS PAP LK+V RLRT H VY
Sbjct: 1708 SQELILLPPYAASFPAPLLKSVQRLRTIHYVYVPLHGQFLSDFEIEQNVQVRYTVQLSFL 1767
Query: 760 ------------ELPDSHPLLE--GMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRS 805
ELPD HPLL MD+R+ DDP YLLAIW E ++
Sbjct: 1768 ALIHFNLVDCSYELPDHHPLLHQAKMDKRDSDDPCLYLLAIWNADEVPAAMP-------- 1819
Query: 806 KESGKLCDEKTC---FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 862
K+ D+ SCNS Q V GT+L+PCRTA +GSFPLNGTYFQVNEVFAD
Sbjct: 1820 ----KISDDDASNPFASCNS-----GQEVPGTILVPCRTANKGSFPLNGTYFQVNEVFAD 1870
Query: 863 HDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGL 898
H SS +P+ V R +WNL R+ VYFGTSV+SIF+ L
Sbjct: 1871 HASSHDPLRVSRTLMWNLKRKFVYFGTSVTSIFRDL 1906
>gi|357452085|ref|XP_003596319.1| Repressor of silencing [Medicago truncatula]
gi|355485367|gb|AES66570.1| Repressor of silencing [Medicago truncatula]
Length = 684
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 95/123 (77%), Gaps = 19/123 (15%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K+I +AIKERGMNN LA+R+++FL RLV +HGSIDLEWLRDVPPD+ K+YL SI
Sbjct: 545 KKIVDAIKERGMNNKLAKRVQNFLIRLVDDHGSIDLEWLRDVPPDQTKEYLSSI------ 598
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
AFP+DTNVGRIAVRLGWVPL PLPESLQLHLLELYP++ SIQK+LW
Sbjct: 599 -------------AFPIDTNVGRIAVRLGWVPLHPLPESLQLHLLELYPLVNSIQKHLWA 645
Query: 563 RLC 565
RLC
Sbjct: 646 RLC 648
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 19/158 (12%)
Query: 377 LSAHKVYDETNPN---ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLD 433
LS + + + NP+ S KRK++ K+ D +SLR Q +GK+E++ + MDS+D
Sbjct: 69 LSINNIKCDVNPSNQSGSNYNKRKSNAGKEQ-FDKDSLRLNAQAKAGKREKTENTMDSVD 127
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ +RC + K+I++AIKERG+NN LA+ +++FL RLV +HG IDLE + +
Sbjct: 128 WDDVRCVDCKKIADAIKERGINNKLAKHIQNFLIRLVDDHGRIDLECVAE---------- 177
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG 531
LGLKS +CV+LLTLH AFPV TN+GRI++ LG
Sbjct: 178 -----LGLKSAKCVQLLTLHQPAFPVATNIGRISIHLG 210
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 24/146 (16%)
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
I + GWVPLQPLPESLQLHLLEL P++ IQK+LW RL L Y I+ G +
Sbjct: 336 IQIVGGWVPLQPLPESLQLHLLELNPLVNFIQKHLWARLSTLP--------YDYISKGLM 387
Query: 586 FCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPM 645
+ + K NCNACPMR +CRHFASAFAS L P PE+ + ++ ++ ++ P VV
Sbjct: 388 Y--QKKTNCNACPMRADCRHFASAFASTTLMFPRPEQ-CFIGASGNSVTDKIPPVV---- 440
Query: 646 PLPSPEKSSLAEVRREIGKCEPIIEE 671
++++ ++ C+PIIEE
Sbjct: 441 ---------MSQLHFKVNICQPIIEE 457
>gi|297723055|ref|NP_001173891.1| Os04g0358000 [Oryza sativa Japonica Group]
gi|255675367|dbj|BAH92619.1| Os04g0358000 [Oryza sativa Japonica Group]
Length = 1310
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 156/542 (28%), Positives = 226/542 (41%), Gaps = 132/542 (24%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
+K + W SL E RN G R D D +D+EAL A ++ + IK+RG ++ +A
Sbjct: 464 KKNDTSHWHSLYDEA-RNRG-YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 521
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVD 520
R+ FL R+ R+HG+IDLEWLR +P KA R+ A
Sbjct: 522 RILAFLIRMKRDHGNIDLEWLRFIPRAKAN--------------YKARMGATPSFAIISG 567
Query: 521 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQL 579
+ GR +Q +P L R+C +QRT YELH Q+
Sbjct: 568 VSSGRQQNSKFSTLIQAMPGYLSFD-----------------RICLTNQRTNRYELHCQM 610
Query: 580 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPS 639
ITFGK C KSKPNC ACP EC+++ S F A LALP ++ A +
Sbjct: 611 ITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKD-----ANMDDP 665
Query: 640 VVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQEC-TEITESDIEDAFYEDPD-- 696
+ + + E+ CEP+IE P TP E E ++ D E+ +Y D D
Sbjct: 666 AKTYDLIFKAHQYQIEYGKNTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDME 725
Query: 697 EIPTIKLNIEEF------TVNLQSYMQEKMELQECDM-SKALVALNPDAASIPAPKLKNV 749
+I ++E+ V+L+S Q K ++ +NP A S P +K
Sbjct: 726 DIGRHDYDMEDIEHDYDMEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKS--TPMVKKF 783
Query: 750 SRLRTEH-----------------QVYE--LPDSHPLLEGMDRREPDDPSPYLLAIWTPG 790
S LRTE+ V+ +PD H +L+ D R P D +PYLL
Sbjct: 784 S-LRTEYTAIFYSWALIILVFFTIAVFRCIIPDGHIILKKFDPRVPGDRNPYLLV----- 837
Query: 791 ETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLN 850
R + TV+ T+L
Sbjct: 838 --------------------------------FRSFDEHTVKATIL-------------- 851
Query: 851 GTYFQVNEVFADHDSSLNPIDVPREWLWNLPRR--MVYFGTSVSSIFKGLSTEGIQFCFW 908
VFADH SS +PI++ R+ +W L R+ +V+FGT V S+ KG + EG+ +
Sbjct: 852 --------VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVTKGQTREGLYHFYN 903
Query: 909 KG 910
+G
Sbjct: 904 EG 905
>gi|412985467|emb|CCO18913.1| predicted protein [Bathycoccus prasinos]
Length = 2056
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 430 DSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
D +D+ L A++ +I E I+ RGM++MLA R+K L R++ E G + LE+LR+ ++
Sbjct: 1123 DCVDWHRVLHEASIDDIIECIRCRGMHSMLAHRIKKILRRVLDERGVLSLEFLREASTEE 1182
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
A YL I G+G K+ CV LL+L + FPVD NVGRI RLGWVPL+ + +L LLE
Sbjct: 1183 ANAYLNEIEGMGAKTSACVNLLSLENRDFPVDVNVGRIMARLGWVPLE---DDFKLELLE 1239
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
Y ES+ ++L RL D LYELHY +IT GKVFC K PNC +CPM +C +
Sbjct: 1240 QYAPEESVYEFLSERLNTFDVTMLYELHYHMITLGKVFCAKRDPNCASCPMNSDCEY 1296
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 831 VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTS 890
++ + A + SFPL+GTYFQVNEVF D S+ P+ V E L P+ + G S
Sbjct: 1757 IKCVFFVTALCACKRSFPLHGTYFQVNEVFLDLRSAAKPVSVDIETLKTSPKIVTLLGAS 1816
Query: 891 VSSIFKGLSTEGIQFCF 907
+ S+ +G++ + F
Sbjct: 1817 IGSVTRGMTRTEVTRLF 1833
>gi|224138764|ref|XP_002326684.1| DNA glycosylase [Populus trichocarpa]
gi|222834006|gb|EEE72483.1| DNA glycosylase [Populus trichocarpa]
Length = 121
Score = 163 bits (412), Expect = 4e-37, Method: Composition-based stats.
Identities = 75/120 (62%), Positives = 91/120 (75%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
MDS+D+EA+R A +++ I+ RG ++A R+K FL+R+V H SIDLEWLR PPD
Sbjct: 1 MDSVDWEAVRQAETSKVASIIEGRGQQTIIAGRIKQFLDRVVDMHKSIDLEWLRYAPPDD 60
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
KDYLL GLGLKSVECVRLL+L +AFPVD NV RIAVRLGWVPL+ LP SLQ HL+E
Sbjct: 61 VKDYLLEFMGLGLKSVECVRLLSLQQVAFPVDVNVARIAVRLGWVPLKALPGSLQFHLIE 120
>gi|224126427|ref|XP_002329551.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
gi|222870260|gb|EEF07391.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
Length = 121
Score = 160 bits (406), Expect = 2e-36, Method: Composition-based stats.
Identities = 74/120 (61%), Positives = 88/120 (73%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
MDS+D+EA+R A EI+ I+ RG ++A +K FLNR+V H SIDLEWLR PPD
Sbjct: 1 MDSVDWEAVRQAETSEIASIIEARGQQTIIAGSIKGFLNRVVEMHKSIDLEWLRYAPPDD 60
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
KDYLL GLGLKSVECVRLL++ H+AFPVD NV I RLGW PL+PLP SLQ HL+E
Sbjct: 61 VKDYLLEFTGLGLKSVECVRLLSIQHVAFPVDINVAWIVFRLGWAPLKPLPGSLQFHLIE 120
>gi|224113519|ref|XP_002316518.1| predicted protein [Populus trichocarpa]
gi|222865558|gb|EEF02689.1| predicted protein [Populus trichocarpa]
Length = 1312
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 203/394 (51%), Gaps = 50/394 (12%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEP 59
MSLA+ FPLK + C+ + T+I++EEP+ CI I+W+ +P +QSS+T H
Sbjct: 939 MSLASLFPLKLRSSGACDRERTSIVIEEPDTCILNPNDIKWNS---NPLYNQSSVTHHGS 995
Query: 60 TEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDS 119
E + E + + S+ E LEEE + SQDS S+ +Q+N G+RS SGSNSEAED
Sbjct: 996 AEPHKDSETLFIERASMVETQSHSLEEEFVLSQDSFDSSTVQAN-GVRSYSGSNSEAEDP 1054
Query: 120 PPGCKL----DNGSANFQQVGNATLFQDFYSCINDSSLF-QEGYHRFKQAEDGGNFQQES 174
GCK D + Q+ + TL +FY C SSLF +E H +QAED N Q
Sbjct: 1055 ATGCKPSMNDDLSFMDLLQMESPTLLGEFYGCEGGSSLFHKESRHEKEQAEDLQNRQPGP 1114
Query: 175 GLESIDNLGSSLTFTQLLNFNSPQ--NQVGFSSDYE-PHMTSYSELLEAEGSEIYNGE-C 230
GLE + NL T+ Q ++ +PQ +V SDY HMTS S + +AEG E+Y+ E
Sbjct: 1115 GLERLGNLNCFSTYNQHFDYCNPQMLGKVVPCSDYGLLHMTSQSNVQQAEGFELYSEENI 1174
Query: 231 SSWPSISS--ESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTM 288
SSW S SS + KA + Q AE +G+T +Q L
Sbjct: 1175 SSWLSYSSRFDKEKAATCTSKAVGQEAESVGKTAAKQYEL-------------------- 1214
Query: 289 QQPNASQTRSPPKYDQSCCDIYQHER-RTFQCESISIAEQMHHT-DLAKEQNVPSGSMLA 346
P Q+ S QSC + ER +T Q +S+S+ ++ +L K+QN ++
Sbjct: 1215 --PRYGQSSS-----QSCHERQVDERNKTLQWQSMSVGGPVNLAEELPKKQN-SYRQQVS 1266
Query: 347 EKTRNLGD--DISVANKLS--DNKLIEPNSVEQV 376
T N+ D I+ NK + +N +++PN+ E+V
Sbjct: 1267 SLTGNIFDVERITSVNKQTPLENNVVDPNTKEKV 1300
>gi|384251193|gb|EIE24671.1| hypothetical protein COCSUDRAFT_62092 [Coccomyxa subellipsoidea
C-169]
Length = 1568
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
LEWLRDV D A+ YL+ + GLG KSV CV LL L FPVDTNVGRI RLGW+PL
Sbjct: 722 LEWLRDVAEDDARQYLMGVMGLGRKSVACVMLLALCKHDFPVDTNVGRICARLGWIPLD- 780
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
L L+ Y + KYL RL D TLYELHYQ+IT GKVFC+K PNC AC
Sbjct: 781 --AEEALEDLDRYAPEPEVHKYLHSRLMHFDTETLYELHYQMITLGKVFCSKKDPNCRAC 838
Query: 598 PMRGECRH 605
P+R +C +
Sbjct: 839 PLRPQCEY 846
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 834 TLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSS 893
+L+PCRTAMRG FPLNGTYFQVNEVF D S +PI V E + RR VYFGTSV++
Sbjct: 1282 AVLVPCRTAMRGRFPLNGTYFQVNEVFLDETSLRSPIQVADEVVGAWVRRPVYFGTSVAA 1341
Query: 894 IFKGLSTEGIQFCFWKG 910
+ +G+ + F G
Sbjct: 1342 VCRGMGQSEVTRFFLDG 1358
>gi|255072753|ref|XP_002500051.1| DNA glycosylase [Micromonas sp. RCC299]
gi|226515313|gb|ACO61309.1| DNA glycosylase [Micromonas sp. RCC299]
Length = 2192
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLR 482
RS + D +D+ A+ A + ++ E I+ RGM+ M A R++ L R+ E G + LE+LR
Sbjct: 1387 RSENTYDMIDWRAVMNAPLGDVVECIRCRGMHFMQARRIQRILRRIHDERKGELSLEFLR 1446
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
+ + A+ YLLS+ G G+K+V C+ LL+L FPVD NVGRI RLGWVPL+
Sbjct: 1447 NCTVEIARGYLLSLEGFGVKTVSCITLLSLFRADFPVDVNVGRIMARLGWVPLE---TEQ 1503
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
L L Y ++ +L RL +TL+ELHY +IT GKVFC K PNC ACP+R
Sbjct: 1504 ALEELAEYAPEPAVYTFLRERLNSFGLQTLFELHYHMITLGKVFCEKRTPNCRACPLRDM 1563
Query: 603 CRHFASA 609
C + +S
Sbjct: 1564 CEYASSG 1570
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 834 TLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSS 893
T+++PCR AM G FPL+GTYFQ NEVF D ++++ P V L LP VY G+SV+S
Sbjct: 1871 TVMVPCRAAMNGKFPLHGTYFQTNEVFLDAETAVRPKLVAASELETLPTVSVYLGSSVAS 1930
Query: 894 IFKGLSTEGIQFCF 907
I +G+S + F
Sbjct: 1931 ICRGMSRAEVASSF 1944
>gi|308803847|ref|XP_003079236.1| DEMETER protein (ISS) [Ostreococcus tauri]
gi|116057691|emb|CAL53894.1| DEMETER protein (ISS), partial [Ostreococcus tauri]
Length = 856
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
+G N L R++ + G + LE+LR+ P D+A++YLL++ G+G+K+ CV LL
Sbjct: 227 KGKNFDLIVXXXXXXXRVMAQRGCLSLEFLREAPTDEAREYLLALDGMGVKTTSCVLLLA 286
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
LH FPVD NVGRI RLGWVPL+ L L Y ++ +L RL
Sbjct: 287 LHRTDFPVDVNVGRIMARLGWVPLE---SETALEELAQYAPEPAVYTFLRKRLNSFGIDM 343
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LYELHY +IT GKVFC K PNC ACP+R C +
Sbjct: 344 LYELHYHMITLGKVFCGKRLPNCGACPLRDICEY 377
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 819 SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
+ S+ E + + +L PC ++M FPL+GTYFQ NEVF D SS+ P+ + + L
Sbjct: 602 NATSIDEITKEKIAVAILTPCASSMGNKFPLHGTYFQTNEVFLDEKSSVVPLKILKGALV 661
Query: 879 NLPRRMVYFGTSVSSIFKGLSTEGIQFCF 907
R V GTS+ SI +G+S + F
Sbjct: 662 KCRRVRVLVGTSIGSITRGMSRAQVTAAF 690
>gi|38346441|emb|CAE04435.2| OSJNBa0018J19.2 [Oryza sativa Japonica Group]
gi|116309571|emb|CAH66631.1| OSIGBa0105P02.5 [Oryza sativa Indica Group]
Length = 798
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 164/370 (44%), Gaps = 52/370 (14%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
+K + W SL E RN G R D D +D+EAL A ++ + IK+RG ++ +A
Sbjct: 464 KKNDTSHWHSLYDEA-RNRGYI-RDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 521
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVD 520
R+ FL R+ R+HG+IDLEWLR +P KA R+ A
Sbjct: 522 RILAFLIRMKRDHGNIDLEWLRFIPRAKAN--------------YKARMGATPSFAIISG 567
Query: 521 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQL 579
+ GR +Q +P L R+C +QRT YELH Q+
Sbjct: 568 VSSGRQQNSKFSTLIQAMPGYLSFD-----------------RICLTNQRTNRYELHCQM 610
Query: 580 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPS 639
ITFGK C KSKPNC ACP EC+++ S F A LALP ++ A +
Sbjct: 611 ITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALPEYSQQDATKD-----ANMDDP 665
Query: 640 VVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECT-EITESDIEDAFYEDPD-- 696
+ + + E+ CEP+IE P TP E E ++ D E+ +Y D D
Sbjct: 666 AKTYDLIFKAHQYQIEYGKNTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDME 725
Query: 697 EIPTIKLNIEEF------TVNLQSYMQEKMELQE-CDMSKALVALNPDAASIPAPKLKNV 749
+I ++E+ V+L+S Q K ++ +NP A S P +K
Sbjct: 726 DIGRHDYDMEDIEHDYDMEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKSTPM--VKKF 783
Query: 750 SRLRTEHQVY 759
S LRTE+ Y
Sbjct: 784 S-LRTEYTAY 792
>gi|218194662|gb|EEC77089.1| hypothetical protein OsI_15494 [Oryza sativa Indica Group]
Length = 1253
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 138/510 (27%), Positives = 201/510 (39%), Gaps = 141/510 (27%)
Query: 401 EKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460
+K + W SL E RN G R D D +D+EAL A ++ + IK+RG ++ +A
Sbjct: 467 KKNDTSHWHSLYDEA-RNRG-YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 524
Query: 461 RMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVD 520
R+ FL R+ R+HG+IDLEWLR +P KA R+ A
Sbjct: 525 RILAFLIRMKRDHGNIDLEWLRFIPRAKAN--------------YKARMGATPSFAIISG 570
Query: 521 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQL 579
+ GR +Q +P L + R+C +QRT YELH Q+
Sbjct: 571 VSSGRQQNSKFSTLIQAMPGYLS-----------------FDRICLTNQRTNRYELHCQM 613
Query: 580 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPS 639
ITFGK A LALP ++ A +
Sbjct: 614 ITFGK----------------------------AALALPEYSQQDATKD-----ANMDDP 640
Query: 640 VVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQEC-TEITESDIEDAFYEDPD-- 696
+ + + E+ CEP+IE P TP E E ++ D E+ +Y D D
Sbjct: 641 AKTYDLIFKAHQYQIEYGKNTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDDME 700
Query: 697 EIPTIKLNIEEF------TVNLQSYMQEKMELQECDM-SKALVALNPDAASIPAPKLKNV 749
+I ++E+ V+L+S Q K ++ +NP A S P +K
Sbjct: 701 DIGRHDYDMEDIEHDYDMEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKS--TPMVKKF 758
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESG 809
S LRTE+ +PD H +L+ D R P D +PYLL
Sbjct: 759 S-LRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLV------------------------ 793
Query: 810 KLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNP 869
R + TV+ T+L VFADH SS +P
Sbjct: 794 -------------FRSFDEHTVKATIL----------------------VFADHSSSRSP 818
Query: 870 IDVPREWLWNLPRR--MVYFGTSVSSIFKG 897
I++ R+ +W L R+ +V+FGT V S+ KG
Sbjct: 819 IEINRDLVWELRRQTCIVHFGTRVHSVTKG 848
>gi|303277163|ref|XP_003057875.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460532|gb|EEH57826.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 108
Score = 115 bits (287), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDK 488
D +D+ A+ A ++++ E I+ RGM+ MLA R+K+ L R+ E G++ LE+LRDVP +
Sbjct: 1 DLIDWNAVLKAPIEDVVECIRCRGMHFMLARRIKNLLRRIASERDGALSLEFLRDVPTEL 60
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
A+ YLLS+ G G+K+V C+ LL L+ FPVD NVGRI RLGWVPL+
Sbjct: 61 ARGYLLSLEGYGVKTVSCILLLALYRADFPVDVNVGRIMARLGWVPLE 108
>gi|145346471|ref|XP_001417710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577938|gb|ABO96003.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 107
Score = 113 bits (282), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D +D+ A+ A + EI + I+ RGM+ MLA R+K L R++ + G + LE+LRD P A
Sbjct: 1 DQVDWYAVLDAPLVEIVKCIRCRGMHWMLARRIKGILKRVMAQRGCLSLEFLRDTPTRDA 60
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
+YLL++ G+G+K+ CV LL LH FPVD NVGRI RLGWVPL+
Sbjct: 61 NEYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIMARLGWVPLE 107
>gi|413949116|gb|AFW81765.1| hypothetical protein ZEAMMB73_889003 [Zea mays]
Length = 107
Score = 111 bits (277), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 843 MRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEG 902
M GSFPLNGTYFQVNEVF++H SS NPI V RE LWNL R MV+FGTSV +IF+GL+TE
Sbjct: 1 MGGSFPLNGTYFQVNEVFSNHRSSHNPIHVKREQLWNLQRCMVFFGTSVPTIFRGLTTEE 60
Query: 903 IQFCFWKG 910
IQ CFW+G
Sbjct: 61 IQHCFWRG 68
>gi|302856195|ref|XP_002959522.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
gi|300254966|gb|EFJ39413.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
Length = 108
Score = 110 bits (274), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 75/107 (70%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D +D+EA+R A + +++ I+ RGM+ MLA R+K FLN++ +I LEWLR+ ++A
Sbjct: 2 DIVDWEAVRTAPDELLADLIRCRGMHVMLARRIKAFLNQVRTGRSTISLEWLRNANVEEA 61
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
+YL+++ GLG KSV C+ LL LH FPVD NV R+ RLGW+P++
Sbjct: 62 TNYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE 108
>gi|361069805|gb|AEW09214.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 592 PNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA-ERNPSVVINPMPLPSP 650
PNCNACPMR +C+HFASAF SARL L +E S ++ M T+ + N + P+PLP+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKETSSDTNPMLTLPYKENENAPSTPLPLPTI 60
Query: 651 EKSSLAEVRREI------------GKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
++ E E+ KCEPIIEEP TPE E E T + +E+ Y DPDEI
Sbjct: 61 QQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEECAYTDPDEI 120
Query: 699 PTIKLNIEEFTVNLQ 713
P IKLN ++ +++Q
Sbjct: 121 PVIKLNFDQLALHIQ 135
>gi|361069807|gb|AEW09215.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 13/135 (9%)
Query: 592 PNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA-ERNPSVVINPMPLPSP 650
PNCNACPMR +C+HFASAF SARL L +E S ++ + T+ + N + P+PLP+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKESSSDTNPLLTLPYKENENAPSTPLPLPTI 60
Query: 651 EKSSLAEVRREI------------GKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
++ E E+ KCEPIIEEP TPE E E T + +E+ Y DPDEI
Sbjct: 61 QQDVNIEKPAEVLPLQLLESNPQDHKCEPIIEEPTTPEPEIIENTNTIVEECAYTDPDEI 120
Query: 699 PTIKLNIEEFTVNLQ 713
P IKLN ++ +++Q
Sbjct: 121 PVIKLNFDQLALHIQ 135
>gi|383158249|gb|AFG61482.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158250|gb|AFG61483.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158251|gb|AFG61484.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158252|gb|AFG61485.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158253|gb|AFG61486.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158254|gb|AFG61487.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158255|gb|AFG61488.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158256|gb|AFG61489.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158257|gb|AFG61490.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158258|gb|AFG61491.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158259|gb|AFG61492.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158260|gb|AFG61493.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158261|gb|AFG61494.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158262|gb|AFG61495.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158263|gb|AFG61496.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158264|gb|AFG61497.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158265|gb|AFG61498.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 13/135 (9%)
Query: 592 PNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMA-ERNPSVVINPMPLPSP 650
PNCNACPMR +C+HFASAF SARL L +E S + M T+ + N + P+PLP+
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKESSSDINPMLTLPYKENENAPSTPLPLPTI 60
Query: 651 EKSSLAEVRREI------------GKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
++ E E+ KCEPIIEEP TPE E E T + +E+ Y DPDEI
Sbjct: 61 QQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEECAYTDPDEI 120
Query: 699 PTIKLNIEEFTVNLQ 713
P IKLN ++ +++Q
Sbjct: 121 PVIKLNFDQLALHIQ 135
>gi|413945491|gb|AFW78140.1| hypothetical protein ZEAMMB73_391413 [Zea mays]
Length = 78
Score = 102 bits (255), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/55 (83%), Positives = 48/55 (87%)
Query: 843 MRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKG 897
MRGSFPLNGTYFQVNEVFADH SS NPI V RE LWNL RRMV+FGTSV +IFKG
Sbjct: 1 MRGSFPLNGTYFQVNEVFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIFKG 55
>gi|302837608|ref|XP_002950363.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f.
nagariensis]
gi|300264368|gb|EFJ48564.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f.
nagariensis]
Length = 1442
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ YL+++ GLG KSV C+ LL LH FPVD NV R+ RLGW+P++ L L+
Sbjct: 26 RSYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE---AEATLEQLDS 82
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
YP + KYL RL D TLYELHYQ IT GK+
Sbjct: 83 YPQEPEVHKYLRSRLMHFDLETLYELHYQSITLGKL 118
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 831 VRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNP 869
+R +L+PCR A+RG FPLNGTYFQ NEVF ++ P
Sbjct: 1269 LRAAVLMPCRVALRGGFPLNGTYFQTNEVFLVEHTAQQP 1307
>gi|365873799|ref|ZP_09413332.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
gi|363983886|gb|EHM10093.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
Length = 242
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+ ++ A V+E++EAIK G+ N A R+++ L + G +E ++ PPD+ +++L
Sbjct: 83 WGSVAVAPVEEVAEAIKVAGLGNSKAARIREILEVVRGRFGGYTMEPIKHWPPDRVREFL 142
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
LS+ G+G K+ CV L L AFPVDT+V R++ RLG+ PL P+ +Q+ VL
Sbjct: 143 LSLPGVGAKTTACVMLFDLGIPAFPVDTHVARLSSRLGFAPLGMEPKDIQV-------VL 195
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + K +R L H +I G+ C +PNC C + C
Sbjct: 196 EGLLK---------PERYLGA-HVNMICHGRAVCRARRPNCKGCVVTSLC 235
>gi|320159427|ref|YP_004172651.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
gi|319993280|dbj|BAJ62051.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
Length = 237
Score = 97.1 bits (240), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 19/181 (10%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
+R R+R + +E +R A ++++ EAI+ G+ N R+++ L ++ E G +DL +L+
Sbjct: 58 QRLRERFPT--WEDVRDAPLEQVIEAIRPAGLANQKGARLQEVLRQITAERGGLDLSFLQ 115
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
D+P ++A+ +LL +G+G+K+ V L +L+ AFPVDT+V R++ R+G P Q E
Sbjct: 116 DLPAEEARTWLLRFKGVGVKTASIVLLFSLNKPAFPVDTHVHRVSGRIGLRPPQMSAEDA 175
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+L +++ + ++Y H LI G+ C KP C CP+R
Sbjct: 176 HAYLAQVF----TPEQYA-------------AGHLNLIRLGREVCHARKPACPRCPLRAV 218
Query: 603 C 603
C
Sbjct: 219 C 219
>gi|269925878|ref|YP_003322501.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789538|gb|ACZ41679.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 236
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 19/199 (9%)
Query: 417 RNSGKQ-ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
+NSG +R D + D++ + A +E+++ IK G++N+ A R++ L + GS
Sbjct: 53 KNSGAAFDRLYDHFNG-DWKRVMEAPTEEVAQLIKSAGLSNIKAPRIQSVLKEIWSRLGS 111
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
DL++L+D+P + AK++L SI G+G K+ CV + +L PVDT+V R+++RLG +P
Sbjct: 112 FDLQFLKDMPINAAKEWLTSINGVGPKTAACVLMFSLGLPVMPVDTHVHRVSLRLGLIP- 170
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
P + + H +L I + Y H LI G+ C P C
Sbjct: 171 -PKTNADRAH-----DILAQI----------VSPERAYPFHINLIRHGRRVCKAPVPKCT 214
Query: 596 ACPMRGECRHFASAFASAR 614
CP+ C +F S R
Sbjct: 215 ICPLTCLCVYFHQNSLSIR 233
>gi|325968210|ref|YP_004244402.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
gi|323707413|gb|ADY00900.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
Length = 231
Score = 95.5 bits (236), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 20/173 (11%)
Query: 438 RCANVKE--ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
+ N+ E ++ AIK GM+ + A ++ + L+R++ E+ DL W++D+P D+A+ LL
Sbjct: 70 KLVNIGEDALANAIKPAGMHRIRARKIIE-LSRVILENYRGDLTWIKDLPLDEARKALLE 128
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ + + L+ L LAFPVDT++ RI++RLG + +S H
Sbjct: 129 LPGVGEKTADVI-LVNLGKLAFPVDTHITRISIRLG------IAKSRNYH---------E 172
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
IQ+ W R+ D E+H +LI FG+ C P C+ C R C ++ S
Sbjct: 173 IQR-AWMRILTPDPSRYLEIHLKLIQFGRDICIARNPRCDMCGFREVCTYYIS 224
>gi|374850043|dbj|BAL53042.1| HhH-GPD family protein [uncultured Chloroflexi bacterium]
Length = 235
Score = 95.5 bits (236), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 425 SRDR-MDSL-----DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL 478
+RDR D+L +EA+R A + E+ EAI+ G+ A R++ L + ++ G+++L
Sbjct: 55 NRDRAFDALRARFPTWEAVRDAPLDEVIEAIRLAGLAQQKAPRLQQVLREITQQRGALEL 114
Query: 479 EWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 538
++L D+P ++A+ +L+ +G+G K+ V L +L AFPVDT++ R++ R+G P +
Sbjct: 115 DFLADLPLEEARRWLMQFKGVGPKTAAIVLLFSLGRPAFPVDTHIYRVSGRIGLRPARMS 174
Query: 539 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACP 598
E L L+P T Y +H LI G+ C +P C CP
Sbjct: 175 VEEAHAFLEALFP-----------------PETYYAVHLNLIRLGREVCQARRPQCERCP 217
Query: 599 MRGECRH 605
+R C +
Sbjct: 218 IREWCDY 224
>gi|86605550|ref|YP_474313.1| base excision DNA repair protein [Synechococcus sp. JA-3-3Ab]
gi|86554092|gb|ABC99050.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-3-3Ab]
Length = 222
Score = 95.1 bits (235), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+EA+ A+ ++++ I+ G+ + A R+++ L +V+ GS+ L++LRD+ A YL
Sbjct: 63 WEAVLAADPTKLAQVIRPGGLAQLKAARIQEILAAIVKRQGSLSLDFLRDLDDADALAYL 122
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
LS++G+GLK+ CV L L PVDT+V R+A RLG V + ++ +L P
Sbjct: 123 LSLKGVGLKTAACVLLFGLGRDLCPVDTHVHRVANRLGLVRARHPDDTFA----QLSP-- 176
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ Y LH LI GK C P C CP+R EC
Sbjct: 177 ------------RIPAGKAYSLHVNLIRLGKRICKARMPECGRCPLRHEC 214
>gi|312880248|ref|ZP_07740048.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
gi|310783539|gb|EFQ23937.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
Length = 232
Score = 93.2 bits (230), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+E++ A+ E+ EAI+ G+ N ++ L RL + G+ L LR PD+A++Y
Sbjct: 69 DWESVALADPGEVQEAIRIAGLANAKGPSIQAILERLREDWGAPTLVPLRSWKPDRAREY 128
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ CV + L AFPVDT+V RI RLGWVP P +Q ++E
Sbjct: 129 LEALPGVGPKTAACVMVFDLGFPAFPVDTHVARICRRLGWVPANLPPHRIQ-RVMEETVA 187
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E Q H LI G+ C P C AC + G C
Sbjct: 188 RERFQG----------------AHLNLIAHGRAVCRARSPRCPACVLVGVC 222
>gi|390556756|ref|ZP_10243163.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
gi|390174670|emb|CCF82450.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
Length = 247
Score = 91.3 bits (225), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 23/184 (12%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW---LRDVPPDKAK 490
+EA+R A V ++++AI+ G+ A R++ L+R++ HG+ D EW L+ +P +AK
Sbjct: 74 WEAVRTAPVADVADAIRSGGLGARKAPRIQAALDRIL-SHGTED-EWSRALKTLPLAEAK 131
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
L+++ G+G K+ CV L A PVDT+V R++ RLG + +P+ + Q H
Sbjct: 132 ARLMALPGVGPKTAACVLLFACGRPALPVDTHVYRVSKRLGLI--EPVVTAEQAH----- 184
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
+ I+K L P +Y H +I G+ CT KP C CP+R C FA
Sbjct: 185 ---DQIEKLLNP-------EDVYSFHLNMIAHGRQVCTARKPRCEWCPLRSRCA-FAQGK 233
Query: 611 ASAR 614
A +R
Sbjct: 234 AGSR 237
>gi|193215044|ref|YP_001996243.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
gi|193088521|gb|ACF13796.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
Length = 227
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A V EI+++I+ G+ N A+R+K L LVR G++ L++L D ++L S +G+
Sbjct: 75 APVAEIAKSIEIGGLANQKAQRIKAILQELVRTQGALSLDFLADFSDKAVLEFLTSFKGV 134
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G+K+ CV L L PVDT++ RI RLG + E+ EL P + + +
Sbjct: 135 GVKTAGCVLLFGLGRDVCPVDTHIHRILNRLGIFSTKHADETFA----ELQPHIPTGKA- 189
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
Y LH LI GK C KPNC C + +C FA A
Sbjct: 190 -------------YSLHVNLIRHGKRVCCARKPNCQTCMLAEDC-EFARA 225
>gi|357419910|ref|YP_004932902.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
gi|355397376|gb|AER66805.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
Length = 244
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
E +DR S ++ + A V+E+++AI+ G+ N+ A+R+K L + GS L+ L+
Sbjct: 74 ESLKDRFPS--WQQVIDAKVEEVADAIRSAGIANVKAQRIKKILATVNGVWGSCSLKGLK 131
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
+ ++ +L S+ G+G K++ CV L L AFPVDT+V R++ RLG+V LPE +
Sbjct: 132 RLEKEEIISFLSSLPGVGPKTIACVLLFDLGIPAFPVDTHVARLSKRLGFVGGNTLPEDI 191
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+ L EL P ++R L H +I G+ C P C C +
Sbjct: 192 EKILEELVP----------------EERFLGG-HLNMIAHGRAICKALNPRCQLCSLAHL 234
Query: 603 CRHFASAFAS 612
C H S A+
Sbjct: 235 CEHLNSKGAA 244
>gi|116754221|ref|YP_843339.1| HhH-GPD family protein [Methanosaeta thermophila PT]
gi|116665672|gb|ABK14699.1| HhH-GPD family protein [Methanosaeta thermophila PT]
Length = 219
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
Y + A+ +EI++AI+ G+ ++ A R+K L RL + GS+DL L+ + +A++YL
Sbjct: 59 YTEILNASEEEIADAIRPGGLADIKAARIKGALERLRDDFGSVDLSPLKRMSAVEARNYL 118
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
SI G+G K+ + L A PVDT+V R++ R+G VP E Q L E+ P
Sbjct: 119 KSIPGIGPKTASVLMLFGFGMSAMPVDTHVYRVSRRMGLVPENASIEETQRILEEITPH- 177
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+KY+ LH LI G++ C P C C ++G CR+
Sbjct: 178 ---EKYI-------------SLHINLIRHGRLVCKARNPLCKKCELKGLCRY 213
>gi|86609598|ref|YP_478360.1| base excision DNA repair protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558140|gb|ABD03097.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 212
Score = 90.1 bits (222), Expect = 5e-15, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+EA+ A+ ++++ I+ G+ ++ A R+++ L + GS+ L++LRD+ A D+L
Sbjct: 55 WEAVLAADPADLAQVIRSGGLAHLKAARIQEILAAIQERQGSLSLDFLRDLDDAGALDFL 114
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
LS++G+GLK+ CV L L PVDT+V R+A RLG V + ++ +L P
Sbjct: 115 LSLKGVGLKTATCVLLFGLGRDLCPVDTHVHRVANRLGLVRAKHPDDTFA----QLSP-- 168
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ + Y LH + GK C P C CP+R C
Sbjct: 169 ------------QIPRGKAYSLHVNFVRLGKRICKARMPECGRCPLRPTC 206
>gi|289523004|ref|ZP_06439858.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503547|gb|EFD24711.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 255
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 415 VQRNSGKQERSRD----RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470
+ +N+ + R R R S +E + E++E IK G++N+ A R+K L +
Sbjct: 65 LSQNTNDKNRDRAYEFLRSRSPRWEDVLVTAETELAEVIKPAGLSNIKASRIKSVLGLIT 124
Query: 471 REHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 530
GS L+ L+ + ++ D+L S+ G+G K+V CV L L AFPVDT+V R+ R+
Sbjct: 125 ERFGSCSLKPLKGMKKEEIIDFLSSLPGVGPKTVACVLLFDLGIPAFPVDTHVNRLCKRI 184
Query: 531 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKS 590
GWV + PE Q + + P + H +I+ G+ C
Sbjct: 185 GWVSPKSTPEETQKIMGSVIP-----------------SDLYWSAHLDIISHGRNICVSR 227
Query: 591 KPNCNACPM 599
+P C CP+
Sbjct: 228 RPKCTICPL 236
>gi|383762204|ref|YP_005441186.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382472|dbj|BAL99288.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 239
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++A+R A + I EAI+ GM N A + L R+ + GS DL L P ++A Y
Sbjct: 69 DWDAVRTAPLDAIKEAIRPAGMYNQKAPAIVATLERIKADWGSYDLRPLAQKPVEEAFTY 128
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V L + AFPVDT++ RI+ R+G + + Y +
Sbjct: 129 LTSLPGVGHKTASIVILFCFNGAAFPVDTHIQRISQRVG----------ISRRRADAYTI 178
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K +W L ++ Y LH LI G+ C P C CP++ C ++
Sbjct: 179 -----KRIWESL--IEPSAFYALHINLIRHGRRTCQALTPRCELCPLQSMCDYY 225
>gi|269792590|ref|YP_003317494.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100225|gb|ACZ19212.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 232
Score = 86.7 bits (213), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 418 NSGKQERSRDRMDSL--DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
N ++R+ + +L +E++ A V+++ AI+ G+ A R+K+ L ++ G+
Sbjct: 57 NDVNRDRAYGNLRALFPSWESVMEAPVEDLEGAIRVAGLGASKARRIKEVLYKVKETLGT 116
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ L +R D+ + +L ++ G+G K+V CV + L AFPVDT+VGR++VR+G P
Sbjct: 117 LSLGAMRSWRRDEVEAFLSTLPGVGPKTVACVLVFDLGIPAFPVDTHVGRLSVRMGLAPG 176
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
P +QL L L +D H LI G+ C +P C
Sbjct: 177 GMKPWEIQLRLESL-----------------IDPERYLGAHVNLIFHGRRICKAQRPRCG 219
Query: 596 ACPMRGEC 603
CP+ G C
Sbjct: 220 DCPLLGTC 227
>gi|282856173|ref|ZP_06265456.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
gi|282585932|gb|EFB91217.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
Length = 234
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 423 ERSRDRMDSLDYEALRCANVKE--ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW 480
ER + R S D R A + + I+EAIK G+ N A + L + G L+
Sbjct: 68 ERLKSRYGSWD----RVAALPQDRIAEAIKPAGICNNKAATILRVLKTVKERFGEYSLKR 123
Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 540
L+ P A D++ I+G+G K+ CV L AFPVDT+V RI+ RLGW + P
Sbjct: 124 LKSGTPAAAWDFMTHIQGVGPKTAACVLAFDLGFPAFPVDTHVARISKRLGWADAKETPA 183
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
+Q L L P H +I GK C P C CP+R
Sbjct: 184 EIQARLERLVP-----------------DGMKCAGHLDVIQHGKNICKARAPKCGECPLR 226
Query: 601 GEC 603
G C
Sbjct: 227 GIC 229
>gi|374857375|dbj|BAL60228.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+YE++ A ++++EAIK G++ A+R+++ L R+ RE G DL +L+D+ + A
Sbjct: 60 NYESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVRE 119
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL G+G K+ V +L+ FPVDT++ RI RLG V + P
Sbjct: 120 LLKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDP------------- 166
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L P R Y+LH LI G+ C KP C+ C + C
Sbjct: 167 -HDVMNALVP------DRLKYQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|374852558|dbj|BAL55489.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
YE++ A ++++EAIK G++ A+R+++ L R+ RE G DL +L+D+ + A L
Sbjct: 61 YESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVREL 120
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
L G+G K+ V +L+ FPVDT++ RI RLG V + P
Sbjct: 121 LKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDP-------------- 166
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L P R Y+LH LI G+ C KP C+ C + C
Sbjct: 167 HDVMNALVP------DRLKYQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|440791540|gb|ELR12778.1| base excision DNA repair protein, HhHGPD subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 494
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKD 491
D+E +R A ++++ I+ G+ ++ LN+L E G + LE LRD+P ++ K
Sbjct: 228 DWERVRTAKPSQLADVIRTGGLAQRKGGIIQGLLNQLHEERDGELSLEHLRDMPTEEVKH 287
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +G+G K+ CV + + FPVDT+V R++ RLG+V ++ +
Sbjct: 288 ALTKYKGIGPKTASCVLMFNMKRADFPVDTHVHRVSTRLGFVRGTTREQTYEF------- 340
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K D +H LI GK C P C C +R +CR+
Sbjct: 341 -----MNATMPDEIKRD------MHVLLIRHGKQVCKARSPKCGECVLRDDCRY 383
>gi|294102031|ref|YP_003553889.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
gi|293617011|gb|ADE57165.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
Length = 233
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 31/191 (16%)
Query: 423 ERSRDRMDSLDYEALRC----------ANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
+R+RDR YE+LR A+ + I EAI+ G++++ ++R+K+ L +
Sbjct: 55 DRNRDRA----YESLRQLYPTWEEVAQADTERIKEAIRVAGLSDIKSKRIKEILVAVQDA 110
Query: 473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
GS ++ LR ++A+ +L + G+G K+V CV L L + AFPVDT++ R + R+GW
Sbjct: 111 FGSYSIKELRKRGREQARAFLFKLPGVGAKTVACVLLFDLGYPAFPVDTHIHRFSKRIGW 170
Query: 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
+ PE ++ L ++ P ++YL H +IT G+ C +P
Sbjct: 171 AHDRCKPEEIEGMLEQVVPE----ERYLGG-------------HINIITHGRNICLARQP 213
Query: 593 NCNACPMRGEC 603
C+ C + C
Sbjct: 214 RCDKCSVNDLC 224
>gi|297801424|ref|XP_002868596.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
gi|297314432|gb|EFH44855.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
Length = 93
Score = 85.1 bits (209), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 43/54 (79%)
Query: 843 MRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFK 896
M+ FPLNGTYFQ NEVFAD+DSS+NPIDVPR+ +W+L RR+ YFG+ S K
Sbjct: 1 MKSGFPLNGTYFQTNEVFADYDSSINPIDVPRKLIWDLDRRIAYFGSFYLSFVK 54
>gi|298242385|ref|ZP_06966192.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297555439|gb|EFH89303.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E +R A KE+ E I + A R++ + ++ E G+++L++L +P ++A +L
Sbjct: 81 WEGVRDAPTKEVEETIANVNFPEVKAPRIQAIMRQITEERGNLNLDFLCSLPVEEAAAWL 140
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+G+G K+ CV L + PVD +V R ++R+G + + ++ L L P
Sbjct: 141 NRFQGIGPKTTACVLLFSCKMPILPVDIHVHRTSIRIGLIGNKVTADNAHTLLQALLPN- 199
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
D RT+Y H L+ G+ C +P CN CP+ C ++ +
Sbjct: 200 --------------DARTIYNFHKGLLRLGQRICVYERPRCNQCPLTKLCDYYRTV 241
>gi|392407188|ref|YP_006443796.1| endoIII-related endonuclease [Anaerobaculum mobile DSM 13181]
gi|390620324|gb|AFM21471.1| putative endoIII-related endonuclease [Anaerobaculum mobile DSM
13181]
Length = 253
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 423 ERSRDRMDSL------DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
+++RDR +L ++ + A +EI+ I+ G++N+ A R+K+ L + G
Sbjct: 71 DKNRDRAYALLKARFPRWDEVLAATHEEIASVIRPAGLSNVKAMRIKEILKIVSDRFGDC 130
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
L LR + ++L S+ G+G K+V CV L L AFPVDT+VGR+ R+GWV +
Sbjct: 131 SLRDLRRMKKGDIVEFLSSLPGVGPKTVACVLLFDLGLPAFPVDTHVGRLCKRIGWVSAK 190
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
P +Q ++ESI + + + H LI+ G+ C +P C
Sbjct: 191 CSPPEIQ-------KIMESI----------IPEELYWSAHLDLISHGRNICLARRPQCGE 233
Query: 597 CPM 599
CP+
Sbjct: 234 CPL 236
>gi|449015802|dbj|BAM79204.1| similar to endonuclease III [Cyanidioschyzon merolae strain 10D]
Length = 276
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 87/197 (44%), Gaps = 42/197 (21%)
Query: 427 DRMDSLDYEALRC----------ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
D++ Y ALR A V EI E I+ G+ A+ ++D L L EH +
Sbjct: 85 DKLSGAAYRALRSRYKDWADVLHAPVGEIEETIRIGGLARTKAQHIQDILREL--EHNAA 142
Query: 477 ----------DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGR 525
LE+LR+VP + +YL G+G K+ CV + TL +FPVDT++ R
Sbjct: 143 TTGTDTDWTQGLEFLRNVPTAQVMEYLTRYPGVGPKTAACVAMFTLERDDSFPVDTHIFR 202
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL-YELHYQLITFGK 584
+A RLGWVP E Q+ L L P TL Y +H +I G+
Sbjct: 203 LAKRLGWVPNGHTREQAQVDLENLIP------------------STLHYPMHILMIEHGR 244
Query: 585 VFCTKSKPNCNACPMRG 601
CT P C C + G
Sbjct: 245 KVCTARGPRCQHCKLAG 261
>gi|307596439|ref|YP_003902756.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
gi|307551640|gb|ADN51705.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
Length = 232
Score = 83.2 bits (204), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 18/164 (10%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
++ AIK GM+ + A ++ + L+R++ E DL W+ D P D+A+ LL + G+G K+
Sbjct: 79 LANAIKPAGMHRIRARKIIE-LSRVILERYGGDLTWIVDSPLDEARKALLELPGVGEKTA 137
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
+ + L+ L FPVDT++ RI++RLG V + E IQK W +
Sbjct: 138 DVI-LVNLGKPTFPVDTHITRISIRLGIVKSRNYRE---------------IQK-AWMGI 180
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
D E+H +LI FG+ C P C+ C + C ++ S
Sbjct: 181 LTPDPSRYLEVHLKLIQFGRDVCRARNPRCDMCGFKEVCNYYMS 224
>gi|288575002|ref|ZP_06393359.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570743|gb|EFC92300.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 238
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 418 NSGKQERSRDRMDSLD--YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
N ++R+ D++ +L +E + E+++AI+ G+ N+ A RM D L + E G
Sbjct: 62 NDNNRDRAFDKLKTLYPLWEDVASVTPDELADAIRVAGIANVKAGRMLDVLKIIHDELGE 121
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
L L+ D + +L + G+G K+ CV + + AFPVDT+V R R+ WVP
Sbjct: 122 YGLTGLKYRDHDGVRAFLEGLPGVGPKTAACVLVFDMDIPAFPVDTHVARFCRRMEWVPR 181
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
P +Q ++ ++ P D+R H +I+ GK C KP C
Sbjct: 182 SATPVRIQEYMEKIVP----------------DERK-KGAHLNIISHGKSICKARKPICQ 224
Query: 596 ACPMRGEC 603
CP+ C
Sbjct: 225 RCPLIDLC 232
>gi|320333147|ref|YP_004169858.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
gi|319754436|gb|ADV66193.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
Length = 258
Score = 82.4 bits (202), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 23/218 (10%)
Query: 393 SKKRKADGEKKNAIDWESLRKEV-----QRNSGKQERS--RDRMDSLDYEALRCANVKEI 445
++ R A G+K E+L + + QR + + E + ++ + D++A+ A V+++
Sbjct: 25 ARTRDAYGQKLLVPRREALHELISTILSQRTNWRDEETAYQELVKIGDWDAIAEAPVEQV 84
Query: 446 SEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVE 505
+ AI+ + A R++ L + + G+ DL +L D+P + +L + G+G+K+
Sbjct: 85 AHAIRASNYPEVKAPRIQATLKAICAQRGNYDLSFLVDLPHEDGLKWLTDLPGVGVKTAS 144
Query: 506 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 565
V L FPVDT+V RI R+G +P E++ +L
Sbjct: 145 LVLLFNFSKPVFPVDTHVHRITTRVGAIPRMG----------------EAVAHKALLKLL 188
Query: 566 KLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D LYELH L+ G+ CT S+P C C +R C
Sbjct: 189 APDPPFLYELHINLLKHGQQVCTFSRPRCPKCVLRDLC 226
>gi|397691245|ref|YP_006528499.1| HhH-GPD family protein [Melioribacter roseus P3M]
gi|395812737|gb|AFN75486.1| HhH-GPD family protein [Melioribacter roseus P3M]
Length = 221
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ L A +KEI + IK+ G+ N A +K+ + L R++ +D+++++ + +A +Y
Sbjct: 48 DWNQLVKAPLKEIEKTIKKAGLTNQKAGAIKNLVVNLSRDN-RLDMKFIKKMDNKEALEY 106
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S +G+G+K+ CV L +L+ PVDT+V R R+G V + PE L + E P
Sbjct: 107 LTSFKGIGIKTASCVLLFSLYRNVCPVDTHVHRTLNRIGIVN-EKSPEKTFLRINENLP- 164
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
E I + LH LI G+ C + P+C CP+ C +
Sbjct: 165 -EGIA---------------HSLHTNLIKLGRGICRPTNPDCTVCPISDLCAY 201
>gi|303272857|ref|XP_003055790.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463764|gb|EEH61042.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 249
Score = 81.6 bits (200), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 425 SRDRMDSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRD 483
SRD L++ E +R A E+ AIK G+ + R+K LN LV E G+ +E+LRD
Sbjct: 104 SRDGRGRLNFWETIRAAPSAEVEAAIKCGGLAEIKTSRIKVILNTLVEERGAPCMEYLRD 163
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 543
+ D K L +G+G K++ CV + L FPVD +V +IA+ LGWVP ++
Sbjct: 164 MSDDDVKSELSRFKGVGPKTIACVLVFCLRR--FPVDAHVWKIAMALGWVPKSASRDAAY 221
Query: 544 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
HL P CKLD LH L+ GK +
Sbjct: 222 EHLNRRV-----------PDACKLD------LHVLLVEHGKAY 247
>gi|392966115|ref|ZP_10331534.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
gi|387845179|emb|CCH53580.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
Length = 255
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E +R A + ++ +AIK + A +++ L ++RE G + +++LRD+ + A +L
Sbjct: 66 WEQVRDAPLPDLIDAIKTANYPEVKAPYIQNVLAHIIRERGDVSIDFLRDLSTEAAMKWL 125
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ G+GLK+ + L PVDT+V R+ R+G + + E LL P
Sbjct: 126 TDLPGIGLKTATLLLLFNFRKPVLPVDTHVHRVTQRVGLIGPKVSAEKAYAMLLAYLPQ- 184
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
D + L+ H G+ CT P C+ C +R C ++ S
Sbjct: 185 --------------DAKDLFNFHKHFYWHGQRICTWYTPKCHECVLRDMCDYYQSGGTMM 230
Query: 614 RLALPGPEEKSIVSS 628
+ P P+ K + S+
Sbjct: 231 LSSTPVPKSKRVGSA 245
>gi|167997017|ref|XP_001751215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A+ K++ +AI+ G+ A+R+ + L+ + E GSI LE++R + D+ K L
Sbjct: 96 WEEVHAADPKKVEDAIRCGGLAETKAKRIINILDTIFTERGSICLEYVRSMNVDQIKAEL 155
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+G+G K+V CV + L FPVDT+V R++ LGWVP E LH+ P
Sbjct: 156 SRFKGVGPKTVACVLMFHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVP-- 213
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
Y+LH L+T GK
Sbjct: 214 ---------------DEVKYDLHCLLVTHGK 229
>gi|325283930|ref|YP_004256471.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
gi|324315739|gb|ADY26854.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
Length = 248
Score = 80.9 bits (198), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++A+ A V++++ AI+ + A R++ L + + G DL++L ++P +A +
Sbjct: 79 DWDAIVAAPVEQVAHAIRRSNYPDQKAPRIQATLRAIREKRGGYDLDFLAELPVAEALSW 138
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G+K+ V L FPVDT+V RI R+G +P + ++ LL L P
Sbjct: 139 LTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRINTRVGTIP-KMGEQTAHRALLTLLPS 197
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
D LY+LH L+ G+ CT + P C C +R C +A
Sbjct: 198 ---------------DPPLLYDLHVNLLKHGQQVCTWNNPKCGRCILRERCDAYA 237
>gi|386855256|ref|YP_006259433.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|379998785|gb|AFD23975.1| Endonuclease III [Deinococcus gobiensis I-0]
Length = 223
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A + ++ AI+ A R+++ L R+ G DL++LRD+P A +
Sbjct: 50 DWADIIAAPTEVVAHAIRRSNYPESKAPRIQETLRRIRDAPGGYDLDFLRDLPVKDALKW 109
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G+K+ V L H FPVDT+V RI +R+G +P +
Sbjct: 110 LTDLPGVGVKTASLVLLFNYHRPVFPVDTHVFRINIRVGTIP----------------QM 153
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E L D LYELH L++ G+ CT + P C C +R C
Sbjct: 154 TEQAAHRALLALLPPDPPFLYELHVNLLSHGRQVCTWTAPKCGECFIRERC 204
>gi|330508003|ref|YP_004384431.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosaeta concilii
GP6]
gi|328928811|gb|AEB68613.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Methanosaeta
concilii GP6]
Length = 224
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 17/177 (9%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D +YE+L A +E+++ I+E G+ N+ A R+++ L + R+ G++D+ +L + D+A
Sbjct: 59 DYGNYESLLLAPTEEVADCIREGGLANIKALRIQEVLLSIKRDRGAMDIGFLEGMDKDEA 118
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
YLL + G+G K+ V L PVDT+V R++ RLG VP PE Q
Sbjct: 119 MSYLLDLPGVGPKTASIVLLFAFGMPFMPVDTHVFRVSQRLGLVPENLSPEKAQ------ 172
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+++++ + P + H LI G+ C P C ++ C F
Sbjct: 173 ----KALERIVPP-------ECYHSFHLNLIRHGRQICRARGPKHEECALKECCDCF 218
>gi|242095290|ref|XP_002438135.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
gi|241916358|gb|EER89502.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
Length = 279
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LR++ D+ K L +G+G K
Sbjct: 118 KRLEDAIRCGGLATTKAARIRAMLRDVRERRGKICLEYLRELSVDEVKKELSRFKGIGPK 177
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+V CV + L FPVDT+V RI +GWVP E +HL P
Sbjct: 178 TVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHL-----------NNKIP 226
Query: 563 RLCKLDQRTLYELHYQLI--TFGKVFCTKSKPNCNACPMRGEC 603
K D L+ H +L KV KSK + ACP+ G C
Sbjct: 227 DDLKFDLNCLFVTHGKLCQSCTKKVVSDKSKNSNAACPLAGYC 269
>gi|397619559|gb|EJK65312.1| hypothetical protein THAOC_13838, partial [Thalassiosira oceanica]
Length = 527
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+N ++ AI+ G++ ERM+ L ++ E G + E+LRD D+ K LL +G+
Sbjct: 342 SNASRVAAAIRCAGLSKTRTERMQLMLQKVKEERGKANFEFLRDCSSDEIKKQLLQHKGM 401
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+V CV L L FPVDT+V RI+ + WVP ES +L + P
Sbjct: 402 GPKTVSCVLLFALLKPEFPVDTHVLRISKQNRWVPASFSRESAYSYLNGVIP-------- 453
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC---RHFASAFASAR 614
D+ L +LH L+ GK +CN C RG+ R F A+ R
Sbjct: 454 --------DEFKL-DLHCLLVAHGK--------HCNQCAARGKAQFPRDFDCPLAAMR 494
>gi|255074589|ref|XP_002500969.1| predicted protein [Micromonas sp. RCC299]
gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 216
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E +R A ++ +AI+ G+ + R++ LN L E G +E+LRD+ D K L
Sbjct: 81 WEQVRTAKPAKVEDAIRCGGLAEVKVSRIQVILNTLKEERGECSMEYLRDMSDDDVKAEL 140
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+G+G K+V CV + L FPVDT+V +IA LGW+P E HL
Sbjct: 141 SRFKGVGPKTVSCVLMFCLKRPDFPVDTHVWKIAKDLGWIPKGAGREDAYEHLNRRV--- 197
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
P CK D LH L+ GKV+
Sbjct: 198 --------PDDCKFD------LHVLLVEHGKVY 216
>gi|424780567|ref|ZP_18207440.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842969|gb|EKU27416.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 218
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A+++++ IK G+ A+ + +LV E G VP D+ + L+
Sbjct: 63 EKLANASIEDVISKIKTIGLYRNKAKNIIACSQKLVEEFGG-------KVPADRKQ--LM 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V + + AF VDT++ RIA RL VPL + ++ + + P
Sbjct: 114 SLPGVGRKTANVVLSVAFNIPAFAVDTHIQRIAKRLQIVPLDASVDEVEKTITSIMP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
+ T LH+QLI FG+ CT KP C+ CP EC ++ S A +
Sbjct: 171 --------------KETWNHLHHQLIYFGRYLCTAKKPKCDQCPFTKECLYYESEVAEKK 216
>gi|55378639|ref|YP_136489.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|55231364|gb|AAV46783.1| endonuclease III [Haloarcula marismortui ATCC 43049]
Length = 278
Score = 79.0 bits (193), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 420 GKQERSRDRMDSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--- 475
G+ S +DS D AL A+ E++E I G+ N +ER+ R+ E+G
Sbjct: 85 GEDANSEGDIDSTDLARALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAG 144
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP 534
D ++RD P+ + LL + G+G K+ +CV L FPVDT+V RIA R+G P
Sbjct: 145 FD-AFVRDSDPEAVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAP 203
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
E+++ +L P + C H +I FG+ +C+ KP C
Sbjct: 204 ADADHETVRAYLERDVPAAK----------CGFG-------HTAIIQFGREYCSARKPAC 246
Query: 595 ----NACPMRGEC 603
+ACP+ G C
Sbjct: 247 LDDPDACPLAGHC 259
>gi|229918737|ref|YP_002887383.1| endonuclease III [Exiguobacterium sp. AT1b]
gi|229470166|gb|ACQ71938.1| endonuclease III [Exiguobacterium sp. AT1b]
Length = 219
Score = 79.0 bits (193), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A+V EI IK G+ A+ +K ++V EHG I VP D+A L
Sbjct: 63 EAMAAADVSEIEALIKRIGLYRNKAKNVKALSEKIVNEHGGI-------VPSDRAS--LE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V + H AF VDT+V R++ RLG + ++ L++ +P E
Sbjct: 114 ALPGVGRKTANVVLSVAFHEPAFAVDTHVERVSKRLGICRWKDNVRQVEDTLMKKFPREE 173
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W +LH+Q I FG+ C +P C ACP+ CR
Sbjct: 174 ------WS-----------QLHHQFIFFGRYHCKAQRPGCEACPLLHMCR 206
>gi|326436846|gb|EGD82416.1| hypothetical protein PTSG_03059 [Salpingoeca sp. ATCC 50818]
Length = 495
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A+V + AI+ G+ + R+K L+ L EHG + LE+LR++P K+ L
Sbjct: 271 WEDVHSADVGALEAAIRSAGLAQTKSRRIKSILDTLHAEHGKLSLEYLRELPSHTVKEQL 330
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
+G+G K++ C+ L + VDT+V R+A R GWVP
Sbjct: 331 ARFKGVGPKTISCLLLFAMQRPDMAVDTHVFRLAKRAGWVP 371
>gi|195645374|gb|ACG42155.1| ROS1 protein [Zea mays]
gi|219887377|gb|ACL54063.1| unknown [Zea mays]
Length = 276
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LR++ D+ K L +G+G K
Sbjct: 116 KRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRFKGIGPK 175
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+V CV + L FPVDT+V RI +GWVP E +HL P + +
Sbjct: 176 TVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIP--DDL------ 227
Query: 563 RLCKLDQRTLYELHYQLI--TFGKVFCTKSKPNCNACPMRGEC 603
K D L+ H +L KV K K + +ACP+ G C
Sbjct: 228 ---KFDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 267
>gi|448684914|ref|ZP_21693001.1| endonuclease III [Haloarcula japonica DSM 6131]
gi|445782845|gb|EMA33686.1| endonuclease III [Haloarcula japonica DSM 6131]
Length = 277
Score = 77.8 bits (190), Expect = 3e-11, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 26/218 (11%)
Query: 414 EVQRNSGKQER--SRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVR 471
E+ R G E S DS AL A+ E++E I G+ N +ER+ R+
Sbjct: 77 ELMRRYGGDEEANSEGDTDSDLARALADADQPELAETISSAGLYNQKSERIIALAQRICE 136
Query: 472 EHG--SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAV 528
E+G S E++R+ P+ + LL + G+G K+ +CV L FPVDT+V RIA
Sbjct: 137 EYGGESGFDEFVREEDPEAVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIAR 196
Query: 529 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCT 588
R+G P E+++ +L P + C H +I FG+ +C+
Sbjct: 197 RMGLAPADADHETVREYLERDVPAEK----------CGFG-------HTAMIQFGREYCS 239
Query: 589 KSKPNC----NACPMRGECRHFASAFASARLALPGPEE 622
KP C +ACP+ G C AS + P E
Sbjct: 240 ARKPACLDDPDACPLAGHCDQIGVYPASGEVVDPAEAE 277
>gi|336375725|gb|EGO04061.1| hypothetical protein SERLA73DRAFT_175790 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388834|gb|EGO29978.1| hypothetical protein SERLADRAFT_458392 [Serpula lacrymans var.
lacrymans S7.9]
Length = 366
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 418 NSGKQERSRDRMDSL----DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH 473
+S R++ +D+ D+ A+ A ++ AI G+ N A+ ++D L + + H
Sbjct: 151 SSANSTRAKHSLDTAFGRNDFAAIAKAARPDVVAAIASGGLANKKAKTIQDILESVKQRH 210
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G+ +L+ L DVP ++A L+S G+G K+ CV L +F VDT+V R++ LGWV
Sbjct: 211 GAYNLQHLADVPDEEAMRELVSYNGVGPKTAACVLSFCLGRESFAVDTHVYRLSRLLGWV 270
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
P Q HL P Y LH ++ G++ K
Sbjct: 271 PQSADRVLAQAHLDVTLP-----------------GELKYALHVMMVKHGRICSGCKKDG 313
Query: 594 CNACPMR 600
+CP++
Sbjct: 314 KGSCPLK 320
>gi|307108459|gb|EFN56699.1| hypothetical protein CHLNCDRAFT_11543, partial [Chlorella
variabilis]
Length = 185
Score = 77.4 bits (189), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E +R A + +++AI+ G+ ++ A R++ L+ L E G LE LR +P AK L
Sbjct: 38 WEGVRTAPLAAVADAIRVGGLADIKAGRIQAILSTLAAERGECSLEHLRGLPAAAAKAEL 97
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+G+G K+ CV L L F VDT+V I+ LGWVP+ + H+ EL P
Sbjct: 98 SRFKGVGKKTAACVLLFALELPEFAVDTHVWEISKALGWVPVNATRDQAYDHMNELVP-- 155
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
Y+LH L+ GK C AC G +
Sbjct: 156 ---------------DELKYDLHVLLVRHGK--------QCPACAKAGSAKQ 184
>gi|413944180|gb|AFW76829.1| ROS1 protein [Zea mays]
Length = 340
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LR++ D+ K L +G+G K
Sbjct: 180 KRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRFKGIGPK 239
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+V CV + L FPVDT+V RI +GWVP E +HL P
Sbjct: 240 TVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHL-----------NNKIP 288
Query: 563 RLCKLDQRTLYELHYQLI--TFGKVFCTKSKPNCNACPMRGEC 603
K D L+ H +L KV K K + +ACP+ G C
Sbjct: 289 DDLKFDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 331
>gi|126458694|ref|YP_001054972.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
gi|126248415|gb|ABO07506.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
Length = 219
Score = 77.0 bits (188), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Query: 417 RNSGKQ-ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RN+ K ++ + R+ + EA+ + E++E IK GM + A ++ + +R
Sbjct: 49 RNAFKAYDQLKRRLGEITPEAVLQLSEDELAELIKPAGMYRIRARNIRALADAFIRH--K 106
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ E LR++ P +A+ +LLS+ G+G K+ + + L+ L AFPVDT++ RIA R G V
Sbjct: 107 VTPEKLREMGPVEARKFLLSLPGVGEKTADVI-LVNLGLPAFPVDTHIRRIAKRWGIVGN 165
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ +E P +KYL E+H +LI FG+ CT P C+
Sbjct: 166 H---GEISRRFMEAVPP----EKYL-------------EVHLKLIQFGRDICTARAPKCH 205
Query: 596 ACPMRGEC 603
CP+ +C
Sbjct: 206 ICPIGSKC 213
>gi|358060340|dbj|GAA93745.1| hypothetical protein E5Q_00391 [Mixia osmundae IAM 14324]
Length = 1544
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
+R DY A++ A+V++++E+I G+ N+ A+ +K L+++ + G +DL +L D+
Sbjct: 637 ERFGYGDYAAIQAASVEDVTESIATGGLANVKAKVIKKVLDQVQEKRGKLDLTYLHDMED 696
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
L+S G+G K+ CV L L +F VDT+V R+ L WVP + E+ HL
Sbjct: 697 IDVMRELISFDGVGFKTASCVLLFCLGRESFAVDTHVFRLTKALNWVPAKADRETTFQHL 756
>gi|297815970|ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321706|gb|EFH52127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 294
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
++E + A K I AI+ G+ A +K+ LNRL E G + LE+LR + ++ K
Sbjct: 127 NWEDVLAAESKSIESAIRCGGLAPKKAVCIKNILNRLQTERGVLCLEYLRGLSVEEVKTE 186
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
L +G+G K+V CV + L H FPVDT+V IA LGWVP
Sbjct: 187 LSHFKGIGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVP 228
>gi|448637456|ref|ZP_21675694.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|445764303|gb|EMA15458.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 278
Score = 76.3 bits (186), Expect = 8e-11, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 420 GKQERSRDRMDSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--- 475
G+ S ++S D AL A+ E++E I G+ N +ER+ R+ E+G
Sbjct: 85 GEDTNSEGNINSTDLARALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAG 144
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP 534
D ++RD +K + LL + G+G K+ +CV L FPVDT+V RIA R+G P
Sbjct: 145 FD-AFVRDSDSEKVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAP 203
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
E+++ +L P + C H +I FG+ +C+ KP C
Sbjct: 204 ADADHETVRAYLERDVPAAK----------CGFG-------HTAMIQFGREYCSARKPAC 246
Query: 595 ----NACPMRGEC 603
+ACP+ G C
Sbjct: 247 LDDPDACPLAGHC 259
>gi|384248095|gb|EIE21580.1| DNA glycosylase, partial [Coccomyxa subellipsoidea C-169]
Length = 257
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ EAI+ G+ ++ AER+K L L+ E G I +E+LR++ D+ K L +G+G K+
Sbjct: 105 KMEEAIRMGGLADIKAERIKAILATLLEERGKICMEYLREMSDDEIKAELF--KGVGKKT 162
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V CV + L FPVDT+V RI+ LGWVP + ++ HL P
Sbjct: 163 VACVLMFCLAREEFPVDTHVWRISKSLGWVPAKATRDAAYEHLNLHVPA----------- 211
Query: 564 LCKLDQRTLYELHYQLITFGK 584
D R Y+LH ++ GK
Sbjct: 212 ----DVR--YDLHVLMVEHGK 226
>gi|448671097|ref|ZP_21687089.1| endonuclease III [Haloarcula amylolytica JCM 13557]
gi|445766179|gb|EMA17313.1| endonuclease III [Haloarcula amylolytica JCM 13557]
Length = 278
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS---IDLEWLRDVPPDKAKDY 492
AL A+ E++E I G+ N +ER+ R+ E+G D E++RD P+ +
Sbjct: 102 ALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEAVRST 160
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL + G+G K+ +CV L FPVDT+V RIA R+G P E+++ +L P
Sbjct: 161 LLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVP 220
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H +I FG+ +C+ KP C +ACP+ G C
Sbjct: 221 AAK----------CGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHC 259
>gi|448626650|ref|ZP_21671429.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445760262|gb|EMA11526.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 277
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDYLLSIRGLGL 501
E++E I G+ N ++R+ R+ E+G D E++R+ PD+ + LL + G+G
Sbjct: 109 ELAETISSAGLYNQKSKRIITLAQRICEEYGGEDGFDEFVREGDPDEVRSTLLDMNGVGP 168
Query: 502 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L FPVDT+V RI R+G P + E+++ +L P +
Sbjct: 169 KTADCVLLFAGGRGGVFPVDTHVHRITRRMGLAPAEADHETVREYLERDVPAAK------ 222
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASAFASARLA 616
C H +I FG+ +C+ KP C +ACP+ G C AS +
Sbjct: 223 ----CGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPASGDVV 271
Query: 617 LP 618
P
Sbjct: 272 DP 273
>gi|15807425|ref|NP_296158.1| endonuclease III [Deinococcus radiodurans R1]
gi|6460251|gb|AAF11977.1|AE002073_7 endonuclease III [Deinococcus radiodurans R1]
Length = 259
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++A+ A ++ AI+ A R+++ L R+ G DL++LRD+P A +
Sbjct: 79 DWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKW 138
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G+K+ V L FPVDT+V R++ R+G +P
Sbjct: 139 LTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGVIPRMG--------------- 183
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E L D LYELH ++ G+ CT ++P C C +R C +A
Sbjct: 184 -EQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTRPKCGKCILRERCDAYA 237
>gi|413945494|gb|AFW78143.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 426
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 385 ETNPNISKSKK-RKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVK 443
+T SK KK R + DWE LR++ ++RS +R DS+D+EA+RCA+V+
Sbjct: 343 DTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCADVR 402
Query: 444 EISEAIKERGMNNMLAERMK 463
IS AI+ERGMNN+LAER++
Sbjct: 403 RISHAIRERGMNNVLAERIQ 422
>gi|18408516|ref|NP_566893.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
gi|332644814|gb|AEE78335.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
Length = 293
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A K I AI+ G+ A +K+ LNRL E G + LE+LR + ++ K L +G+
Sbjct: 134 AESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGV 193
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
G K+V CV + L H FPVDT+V IA LGWVP +HL
Sbjct: 194 GPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHL 240
>gi|448681086|ref|ZP_21691232.1| endonuclease III [Haloarcula argentinensis DSM 12282]
gi|445768144|gb|EMA19231.1| endonuclease III [Haloarcula argentinensis DSM 12282]
Length = 277
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 425 SRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG--SIDLEWLR 482
S DS AL A+ E++E I G+ N +ER+ R+ E+G S E++R
Sbjct: 90 SEGDTDSDLARALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGESGFDEFVR 149
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPES 541
+ P++ + LL + G+G K+ +CV L FPVDT+V RIA R+G P E+
Sbjct: 150 ESDPEEVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHET 209
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NAC 597
++ +L P + C H +I FG+ +C+ KP C +AC
Sbjct: 210 VREYLERDVPAEK----------CGFG-------HTAMIQFGREYCSARKPACLDDPDAC 252
Query: 598 PMRGECRHFASAFASARLALP 618
P+ G C ++ +A P
Sbjct: 253 PLAGHCDQVGVYPSTGEVADP 273
>gi|255540783|ref|XP_002511456.1| Endonuclease III, putative [Ricinus communis]
gi|223550571|gb|EEF52058.1| Endonuclease III, putative [Ricinus communis]
Length = 291
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ + A K I AI+ G+ A +K+ LN L+ + G I LE+LRD+ D+ K L
Sbjct: 118 WQDVLAAEPKWIENAIRCGGLAPAKASCIKNILNCLLEKKGKICLEYLRDMSVDEIKAEL 177
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+G+G K+V CV + L FPVDT+V IA LGWVP LHL + P
Sbjct: 178 SQFKGVGPKTVACVLMFHLQQEDFPVDTHVFEIAKALGWVPEVADRNKTYLHLNQRIP 235
>gi|357477261|ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
gi|355509971|gb|AES91113.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
Length = 280
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A KE+ AI+ G+ A+ +K+ L+ L+ G + LE+LRD+ D+ K L
Sbjct: 115 WEHVHGAESKELENAIRCGGLAPTKAKCIKNLLSCLLERKGKMCLEYLRDLSVDEVKAEL 174
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+G+G K+V CV + L FPVDT++ IA +GWVP LHL + P
Sbjct: 175 SLFKGIGPKTVSCVLMFNLQLDDFPVDTHIFEIAKTMGWVPAAADRNKTYLHLNQRIP 232
>gi|449541266|gb|EMD32251.1| hypothetical protein CERSUDRAFT_22472, partial [Ceriporiopsis
subvermispora B]
Length = 275
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 110/263 (41%), Gaps = 54/263 (20%)
Query: 370 PNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAID--------WESLRKEV--QRNS 419
P E+VL+ V E +P+++K + R DG NA ESL + Q S
Sbjct: 10 PKEAEEVLT---VLAEEHPHVAKEQTRPRDG--NNAARTCGSVPNVLESLIGTILSQNTS 64
Query: 420 GKQERSRD-----RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
GK + R D+ A+ A E+ EAI+ G+ N A ++ L + HG
Sbjct: 65 GKNSTAAKHSLDARFGRNDFAAIAEAPKSEVVEAIRMGGLANKKAGVIQQVLKEVRERHG 124
Query: 475 SIDLEWLRDVPPDKAKDY----------------LLSIRGLGLKSVECVRLLTLHHLAFP 518
S L+ L V +AK L+S G+G K+ CV L L +FP
Sbjct: 125 SYSLQHLAGVVEKEAKGKAKSSGTPVSDEEAMQELVSYDGVGPKTASCVLLFCLGRASFP 184
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VDT+V R++ LGWVP + + Q HL K+ Q Y LH
Sbjct: 185 VDTHVFRLSKLLGWVPAKADRVTAQAHL-----------------DLKIPQDLKYGLHVL 227
Query: 579 LITFG-KVFCTKSKPNCNACPMR 600
+I G + K+ + +CP++
Sbjct: 228 MIAHGRRCKGCKTSGSRTSCPLK 250
>gi|344212676|ref|YP_004796996.1| endonuclease III [Haloarcula hispanica ATCC 33960]
gi|343784031|gb|AEM58008.1| endonuclease III [Haloarcula hispanica ATCC 33960]
Length = 277
Score = 73.9 bits (180), Expect = 4e-10, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGS---IDLEWLRDVPPDKAKDYLLSIRGLG 500
E++E I G+ N +ER+ R+ E+G D E++RD P+K + LL + G+G
Sbjct: 109 ELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEKVRSTLLDMNGVG 167
Query: 501 LKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
K+ +CV L FPVDT+V RIA R+G P E+++ E +++
Sbjct: 168 PKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVR----------EYLERD 217
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H +I FG+ +C+ KP C +ACP+ G C
Sbjct: 218 VPGEKCGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHC 258
>gi|125596638|gb|EAZ36418.1| hypothetical protein OsJ_20749 [Oryza sativa Japonica Group]
Length = 277
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LRD+ D+ K L +G+G K
Sbjct: 118 KRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPK 177
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
+V CV + L FPVDT+V RI +GWVP E LHL
Sbjct: 178 TVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHL 221
>gi|51535148|dbj|BAD37860.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|51535812|dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|218197872|gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Group]
Length = 277
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LRD+ D+ K L +G+G K
Sbjct: 118 KRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPK 177
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
+V CV + L FPVDT+V RI +GWVP E LHL
Sbjct: 178 TVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHL 221
>gi|239906402|ref|YP_002953143.1| DNA glycosylase [Desulfovibrio magneticus RS-1]
gi|239796268|dbj|BAH75257.1| putative DNA glycosylase [Desulfovibrio magneticus RS-1]
Length = 216
Score = 73.6 bits (179), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD L A+++ ++E I+ G + A R+K+ + +V E G DL L D+A+D
Sbjct: 60 LDPHVLHAASLEAVAERIRPAGHFRVKAGRLKNLMALIVEELGG-DLTALAGYDLDQARD 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LLS++G+G ++ + + L L+ AF VD RI R G P + + L+ ++ P
Sbjct: 119 KLLSVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLAPEEAGYDELRELFMDALP 178
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
D R E H L+ G +C P C ACP+
Sbjct: 179 E---------------DVRLYNEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|340516169|gb|EGR46419.1| predicted protein [Trichoderma reesei QM6a]
Length = 274
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 417 RNSGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
RNS + +R+ D S ++ ++ +++ I G++ + + + D L++ +G
Sbjct: 100 RNSSRAKRAMDETYGGSDNWASIVEGGTEKLQRTIHSGGLSVVKSRVIMDILHQTKARYG 159
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
L+ L D D+A LLS +G+G K+ CV L L +F VDT+V RI+ LGW+P
Sbjct: 160 KYSLDHLLDASDDEAMRELLSFQGVGPKTASCVLLFCLRRDSFAVDTHVYRISSLLGWIP 219
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK--VFCTKSKP 592
E Q HL P Y LH ++T GK C
Sbjct: 220 PSATREQAQAHLEARVP-----------------DEDKYGLHILMVTHGKRCAECKARGK 262
Query: 593 NCNACPMRGECR 604
N C +R R
Sbjct: 263 NAGKCALRRAFR 274
>gi|440476191|gb|ELQ44813.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
Y34]
gi|440486908|gb|ELQ66733.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
P131]
Length = 375
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 22/198 (11%)
Query: 418 NSGKQERSRDRMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
NS + +RS DR ++ A+ V ++ EAI+ G++ + + + L + +G
Sbjct: 177 NSARAKRSMDRAYGGRHDNWPAVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYG 236
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
S L+ LR+ ++A +L+ +G+G K+ CV L L +F VDT+V R+ LGW P
Sbjct: 237 SYSLDHLREASDEEAMREMLAFKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRP 296
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK--VFCTKSKP 592
E LHL P Y LH LIT GK C
Sbjct: 297 AGTSREEAHLHLDARIP-----------------DEDKYGLHVLLITHGKRCAECKAGGK 339
Query: 593 NCNACPMRGECRHFASAF 610
+ C +R R F
Sbjct: 340 SSGKCELRRALREKDEGF 357
>gi|409048228|gb|EKM57706.1| hypothetical protein PHACADRAFT_251498 [Phanerochaete carnosa
HHB-10118-sp]
Length = 323
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDV-----PPD 487
++EA+ A E+ +A++ G+ N AE ++ L+ + HGS L+ L V P +
Sbjct: 124 NFEAIVNAPKSELVDALRTGGLANKKAEVIQRILHEVKERHGSYSLQHLAGVVESQEPGE 183
Query: 488 KAKDY--------LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
+AK + L+S G+G K+ CV L L +F VDT+V R++ LGWVP +
Sbjct: 184 EAKVFSDEDAMKELVSYNGVGPKTASCVLLFCLGRASFAVDTHVFRLSRLLGWVPARANR 243
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
+ Q HL P Y LH ++ G+ CN C
Sbjct: 244 VTAQAHLDLRVP-----------------NDLKYGLHVLMVGHGR--------QCNGCRG 278
Query: 600 RGEC 603
RGEC
Sbjct: 279 RGEC 282
>gi|354611948|ref|ZP_09029900.1| HhH-GPD family protein [Halobacterium sp. DL1]
gi|353191526|gb|EHB57032.1| HhH-GPD family protein [Halobacterium sp. DL1]
Length = 269
Score = 72.8 bits (177), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS---IDLEWLRDVPPDKAKDY 492
AL A+ E++E I G+ N +E + ++ E+G D E++R PD +D
Sbjct: 92 ALADAHQDELAETISSAGLYNQKSETLIRLAGQICEEYGGEAGFD-EFVRTEDPDAVRDA 150
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L + FPVDT+V RIA R+G P E ++
Sbjct: 151 LLDMKGVGPKTADCVLLFSGGRAGVFPVDTHVHRIARRMGLAPPDADHEGVR-------- 202
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
E+++ + C H +I FG+ +CT KP C ACP+ C
Sbjct: 203 --EALEAAVPAEACGFG-------HTAMIQFGREYCTARKPACLDGPEACPLYDYC 249
>gi|448411957|ref|ZP_21576313.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
gi|445669891|gb|ELZ22499.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
Length = 279
Score = 72.8 bits (177), Expect = 8e-10, Method: Composition-based stats.
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDY 492
E+L A+ +E++E I G+ N +ER+ R+ E+G D E+++ P+ ++
Sbjct: 100 ESLAAADQQELAETISSAGLYNQKSERIVALAERICEEYGGADGFDEFVKTGEPNVVRET 159
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL + G+G K+ +CV L + FPVDT+V RIA R+G P E ++
Sbjct: 160 LLDMNGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEGVR-------- 211
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
E+++ + C H +I FG+ +C+ KP C ACP+ C
Sbjct: 212 --EALEAAVPEEKCGFG-------HTAMIQFGREYCSARKPACLDDPEACPLADLCDQVG 262
Query: 608 SAFASARLALPG 619
+ + + P
Sbjct: 263 VSPGTGEVVDPA 274
>gi|389622827|ref|XP_003709067.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
gi|351648596|gb|EHA56455.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
Length = 382
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 22/198 (11%)
Query: 418 NSGKQERSRDRMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
NS + +RS DR ++ A+ V ++ EAI+ G++ + + + L + +G
Sbjct: 184 NSARAKRSMDRAYGGRHDNWPAVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYG 243
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
S L+ LR+ ++A +L+ +G+G K+ CV L L +F VDT+V R+ LGW P
Sbjct: 244 SYSLDHLREASDEEAMREMLAFKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRP 303
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK--VFCTKSKP 592
E LHL P Y LH LIT GK C
Sbjct: 304 AGTSREEAHLHLDARIP-----------------DEDKYGLHVLLITHGKRCAECKAGGK 346
Query: 593 NCNACPMRGECRHFASAF 610
+ C +R R F
Sbjct: 347 SSGKCELRRALREKDEGF 364
>gi|298252264|ref|ZP_06976067.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297546856|gb|EFH80724.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 242
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL---------VREHGSIDLEWLRDV 484
+E +R A E++EAIK G+ N+ A R++ L+ L R + + L+
Sbjct: 65 WEEVRDAPTHEVAEAIKSGGLANVKAPRIQSALHTLSEWQRAKGDTRSLSAFLQDELKGQ 124
Query: 485 PPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQL 544
P ++A YL + G+G K+ CV L + P+DT++ R+ RLG + P + Q
Sbjct: 125 PLEEAWRYLQQMPGVGPKTAACVLLFNMGRPLMPIDTHLHRLTHRLGLI--GPKVSADQA 182
Query: 545 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
H + L K L P Y LH LI G+ C +P C CP+ EC
Sbjct: 183 HTIFL--------KALPPEWA-------YTLHVNLIRHGRTICHAQRPKCPQCPLLSECA 227
Query: 605 HFASA 609
+ S
Sbjct: 228 YAGSV 232
>gi|159042442|ref|YP_001541694.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
gi|157921277|gb|ABW02704.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
Length = 230
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 26/188 (13%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
ER ++R+ S+ + + E+ ++ G A R+ + N V E + LE++R
Sbjct: 58 ERLKERLGSITPNTILSLSKSELENILRPIGSFRQRARRLIELANT-VNEKYNGSLEFIR 116
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
+ D+A+ L+++ G+G K+ + V LL L FPVDT++ RI+ RLG
Sbjct: 117 GMGTDEARRTLMNLPGVGPKTADVV-LLNLGKPVFPVDTHIMRISHRLG----------- 164
Query: 543 QLHLLELYPVLESIQKY--LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
V+ +K W +L K ++ + +H LI FG+ C +P C CP+R
Sbjct: 165 ---------VMGGYEKVSAFWIKLLKPNEYLM--VHLGLIAFGRAICRSRRPLCEHCPLR 213
Query: 601 GECRHFAS 608
+C+++ S
Sbjct: 214 VKCKYYLS 221
>gi|443896168|dbj|GAC73512.1| nitrogen permease regulator NLRG/NPR2, partial [Pseudozyma
antarctica T-34]
Length = 979
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 417 RNSGKQERS-RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RNS RS D ++EA+ A E+ EAI+ G+ N A +K L++ + +HG
Sbjct: 517 RNSAAAHRSLTDHFGRRNWEAIHAAPESELVEAIRCGGLANNKARTIKGILSQTMEKHGK 576
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ L+ L D+ L+S G+G K CV + + VDT+V R+ LGWVP
Sbjct: 577 LSLDHLHTATDDEIMQELVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKSLGWVPE 636
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + HL E P Y LH LI GK C
Sbjct: 637 KANRDQTYYHLHERVP-----------------GHLKYPLHVLLIQHGK--------RCA 671
Query: 596 ACPMRG 601
C +G
Sbjct: 672 NCSAKG 677
>gi|260655074|ref|ZP_05860562.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|424844920|ref|ZP_18269531.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
gi|260630185|gb|EEX48379.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|363986358|gb|EHM13188.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
Length = 234
Score = 72.8 bits (177), Expect = 9e-10, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G L LR P +A +++ SI+G+G+K+ CV + L AFPVDT+V R R+GW
Sbjct: 117 GQYSLGLLRKKKPAEAWNFMTSIKGVGVKTAACVMVFDLGFPAFPVDTHVARFCRRMGWA 176
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
P + P ++Q + L P D R H +IT G+ C P
Sbjct: 177 PEKASPAAIQEMMEGLVP----------------DSRKA-GAHLNIITHGRRVCKARGPL 219
Query: 594 CNACPMRGEC 603
C C +RG C
Sbjct: 220 CGDCLLRGLC 229
>gi|448385412|ref|ZP_21563918.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
gi|445656907|gb|ELZ09739.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
Length = 307
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 401 EKKNAIDWESLRKEVQRNS-GKQERSRDRMDSLDY-EALRCANVKEISEAIKERGMNNML 458
+ +A D R+E N+ G+ + R +D E+L A ++E I G+ N
Sbjct: 91 DANSASDARRERREGLDNANGEAVSGQPRAKDIDLAESLAAAEQSTLAETISGAGLYNQK 150
Query: 459 AERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
+E + D ++ E GS +++D PP + ++ LL +RG+G K+ +CV L
Sbjct: 151 SETIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRETLLGVRGVGPKTADCVLLFAGGRGG 210
Query: 517 -FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
FPVDT+V RI R+G P E+++ E +++ + C
Sbjct: 211 VFPVDTHVHRIYRRMGIAPPDADHEAVR----------EVLERDVPAAKCGFG------- 253
Query: 576 HYQLITFGKVFCTKSKPNC----NACPMRGEC 603
H I FG+ +C P C +ACPM C
Sbjct: 254 HTATIQFGREYCRARTPACLEDPDACPMADRC 285
>gi|403252796|ref|ZP_10919102.1| repair endonuclease [Thermotoga sp. EMP]
gi|402811884|gb|EJX26367.1| repair endonuclease [Thermotoga sp. EMP]
Length = 232
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 32/199 (16%)
Query: 409 ESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNR 468
E+++ EV+ N+ +E +DSL E +++E I+ G N+ +R+K+ L +
Sbjct: 60 ENIKNEVKGNNLLKE-----LDSLSEE--------KMAELIRPAGFFNIKTKRLKELL-K 105
Query: 469 LVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 528
++E+ + DL LRD+P ++ L I+G+G ++ + + L L F VD+ R+
Sbjct: 106 FLKEY-NYDLSRLRDLPTHILRERFLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLK 164
Query: 529 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCT 588
R+ + L E +L + YP E +Q Y E H ++ K FC+
Sbjct: 165 RIFNIELNDYDEVQRLFMTH-YP--EDVQLY-------------QEFHGLIVEHAKKFCS 208
Query: 589 KSKPNCNACPMRGECRHFA 607
K+ P C+ACP+R EC H +
Sbjct: 209 KT-PKCDACPLRKECYHVS 226
>gi|448572049|ref|ZP_21640138.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|448596871|ref|ZP_21654009.1| endonuclease III [Haloferax alexandrinus JCM 10717]
gi|445721082|gb|ELZ72751.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|445740752|gb|ELZ92257.1| endonuclease III [Haloferax alexandrinus JCM 10717]
Length = 268
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FCT KP C +ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVC 248
>gi|433424488|ref|ZP_20406484.1| endonuclease III [Haloferax sp. BAB2207]
gi|432198075|gb|ELK54399.1| endonuclease III [Haloferax sp. BAB2207]
Length = 268
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALEHDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FCT KP C +ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVC 248
>gi|229585498|ref|YP_002844000.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
gi|228020548|gb|ACP55955.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
Length = 233
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L AN+ +I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDANLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
L +LH+ LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 -----------------LLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|358381882|gb|EHK19556.1| hypothetical protein TRIVIDRAFT_24735, partial [Trichoderma virens
Gv29-8]
Length = 274
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 417 RNSGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
RNS + + + D S ++EA+ +++ I+ G++ + ++ + + L + ++G
Sbjct: 90 RNSSRAKLAMDETYGRSDNWEAIVDGGTEKLQRTIRSGGLSVVKSKVIINILRQTKAKYG 149
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
S L+ L D A LLS +G+G K+ CV L L +FPVDT+V RI LGW P
Sbjct: 150 SYSLDHLLHASNDSAMRELLSFQGVGPKTASCVLLFCLQRDSFPVDTHVYRITGLLGWRP 209
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKP 592
E Q HL P Y LH L+T GK C
Sbjct: 210 ETASREEAQAHLEARVP-----------------DEDKYGLHILLVTHGKTCNECRAGST 252
Query: 593 NCNACPMR 600
CP+R
Sbjct: 253 KSGKCPLR 260
>gi|284042265|ref|YP_003392605.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
gi|283946486|gb|ADB49230.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
Length = 241
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL--VREHGSIDLEW 480
ER R+R D+ A+ A E+ EAI+ G++ + ++R++ L + E +DL +
Sbjct: 71 ERLRERF--ADWRAVLEAPNAEVEEAIRPGGISKVKSKRIQQILRAIDDSPEGAGLDLSF 128
Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV-PLQPLP 539
LRD + YL S+ G+G K+ CV L PVDT+V R+ +RL + P P
Sbjct: 129 LRDASVPDGQRYLCSLPGVGRKTAACVLLFAYGLRDVPVDTHVSRVGMRLRLLRPGAPF- 187
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
E L +L+L P + + E H L+ G+ C +P+C AC +
Sbjct: 188 EELHDEMLDLSPRGQEL-----------------EFHVNLLRHGRRTCHARRPDCPACVL 230
Query: 600 RGEC 603
R C
Sbjct: 231 RRVC 234
>gi|307111853|gb|EFN60087.1| hypothetical protein CHLNCDRAFT_14787, partial [Chlorella
variabilis]
Length = 56
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
+ LEWLRD P + A++YL++I GLG KSV C+ LL L FPVDTNVGRI R WV
Sbjct: 1 LSLEWLRDAPDEVARNYLMNINGLGRKSVGCIMLLCLGKKEFPVDTNVGRICAR--WV 56
>gi|186511539|ref|NP_001118934.1| uncharacterized protein [Arabidopsis thaliana]
gi|332657049|gb|AEE82449.1| uncharacterized protein [Arabidopsis thaliana]
Length = 78
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 859 VFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQ 904
+FADH SSLNPIDVPRE +W+LPRR V+FGTS+ +IFK GIQ
Sbjct: 30 MFADHASSLNPIDVPRELIWDLPRRTVFFGTSIPTIFKDSKEAGIQ 75
>gi|379005350|ref|YP_005261022.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
gi|375160803|gb|AFA40415.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
Length = 218
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+ R+ S+ E+LR ++ E+ E IK GM A +K + + I E L +
Sbjct: 57 KKRLGSITPESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMG 114
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D A+ L+ + G+G K+ + V L+ L AFPVDT++ RIA R G
Sbjct: 115 ADAARKLLMGLPGVGRKTADVV-LVNLGLPAFPVDTHITRIAKRWG-------------- 159
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ E I ++ +L K +R L E H +LI FG+ C KP C CP+ C
Sbjct: 160 ---VGSRYEDISRWFMEQLQK--ERCL-EFHLKLIQFGRDICKARKPRCEECPIGERCPS 213
Query: 606 F 606
F
Sbjct: 214 F 214
>gi|297527052|ref|YP_003669076.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
gi|297255968|gb|ADI32177.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
Length = 234
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL-EWLRDVPPDKAKDYLLSIRGLG 500
+ ++ EA+K GM N A+R+ + ++ +L + + + +A+ YL+S+ G+G
Sbjct: 76 IDKLIEALKPAGMYNQRAQRIIELAKIFTEKNVEEELGKLIEEGKLREARKYLVSLPGVG 135
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
LK+ + V L+ FPVDT++ R+ RLG++ E+I +
Sbjct: 136 LKTADVVLLMYYGQPVFPVDTHIRRVTKRLGYIGKDD---------------YEAISSW- 179
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
W + +L E H LIT G+ C KP CN CP+R C+++
Sbjct: 180 WMK--QLKPNDYLETHLLLITHGRKTCKARKPLCNICPIRKYCKYY 223
>gi|15897075|ref|NP_341680.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus P2]
gi|284173420|ref|ZP_06387389.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus 98/2]
gi|384433576|ref|YP_005642934.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
gi|1707778|emb|CAA69576.1| endonuclease III [Sulfolobus solfataricus P2]
gi|13813246|gb|AAK40470.1| DNA endonuclease III, probable (ntH-1) [Sulfolobus solfataricus P2]
gi|261601730|gb|ACX91333.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
Length = 236
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV--REHGSIDLEWLRDVPPDKAKDY 492
E L AN+ +I A+K G+ A+R+K+ ++R++ R +G ID + A+D
Sbjct: 69 EKLSNANLADIESALKISGLYRTKAKRLKE-ISRIILERYNGLID----SLLNTSNARDE 123
Query: 493 LLSIRGLGLKSVECVRLLTLH----HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
LL + G+G K+ + V LLT + + FPVDT++ R++ RLG VP + L E
Sbjct: 124 LLKLEGIGEKTADVV-LLTCYGYYGYKVFPVDTHITRVSKRLGIVPTNAKYSLISSTLKE 182
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
L+ + L LH+ LI G+ C KP CN+C ++ C +++
Sbjct: 183 LFSAYD-----------------LLHLHHMLIAHGRQTCKARKPLCNSCIIKECCEYYS 224
>gi|374327779|ref|YP_005085979.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
gi|356643048|gb|AET33727.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
Length = 224
Score = 72.0 bits (175), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+ R+ + EAL + +E+ E I+ GM+ A +K + ++ I + L ++
Sbjct: 58 KKRLGGVTPEALLALSTEELEELIRPAGMHRQRARNLKALADAFIKL--GITPQRLVEMG 115
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P +A+ LLS+ G+G K+ + V L+ L AFPVDT++ RIA R G + +
Sbjct: 116 PGEARRLLLSLPGVGEKTADVV-LVNLGLPAFPVDTHITRIAKRWG---VGDRYGQISRW 171
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+E+ P ++YL E+H +LI FG+ C P C CP+ C
Sbjct: 172 FMEMVPP----ERYL-------------EIHLKLIQFGRYVCKARDPRCGVCPIGERCPS 214
Query: 606 FASAFASA 613
+ SA S+
Sbjct: 215 YRSAGRSS 222
>gi|297625112|ref|YP_003706546.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
gi|297166292|gb|ADI16003.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
Length = 241
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 422 QERSRDRMDSL--DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLE 479
+ER+ RM + +R A V E++EAI + A ++ + R++ DL
Sbjct: 64 EERAYRRMWERFGSWVGVRDAPVAELAEAIAPSNYPEVKAPNIQKTVARVLERSPEADLS 123
Query: 480 WLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
+LRD+P D+A +L S+ G+GLK+ V L PVDT+V R++ R+G
Sbjct: 124 FLRDLPLDEALAWLTSLPGVGLKTASLVLLFCFARPVLPVDTHVYRVSQRVG-------- 175
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
LL + L + LY H L+ G+ C P C+ CP+
Sbjct: 176 ------LLSARVKTPTAAHAPLLALLPPEPAVLYNFHMALLVHGQRLCVWRAPRCSRCPL 229
Query: 600 RGECRHF 606
CR F
Sbjct: 230 TARCRWF 236
>gi|126466261|ref|YP_001041370.1| HhH-GPD family protein [Staphylothermus marinus F1]
gi|126015084|gb|ABN70462.1| HhH-GPD family protein [Staphylothermus marinus F1]
Length = 228
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERM----KDFLNRLVREHGSIDLEWLRDVPPD--- 487
E + +++++ EA+K GM N A+R+ K F R V+E LR + +
Sbjct: 69 EKILSTSIEKLVEALKPAGMYNQRAQRIVELAKIFTERNVKEE-------LRKLVEEGKL 121
Query: 488 -KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
+A+ YL+++ G+GLK+ + V L+ FPVDT++ R++ RLG++
Sbjct: 122 REARKYLVNLPGVGLKTADVVLLMYYKQPVFPVDTHIRRVSKRLGYIEKDN--------- 172
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
E+I ++ W + +L E H LIT G+ C KP C+ CP+ C+++
Sbjct: 173 ------YETISRW-WMK--QLKPNEYLEAHLLLITHGRKTCKARKPLCDKCPINKYCKYY 223
>gi|71003520|ref|XP_756426.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
gi|46096031|gb|EAK81264.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
Length = 1875
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 417 RNSGKQERS-RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RNS RS + ++ A+ A E+ EAI+ G+ N A +K LN+ ++ HG
Sbjct: 1418 RNSAAAHRSLTEHFGVRNWHAIHAAPESELVEAIRCGGLANNKARTIKGILNQTLQRHGK 1477
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ L+ L D D+ L+S G+G K CV + + VDT+V R+ L WVP
Sbjct: 1478 LSLDHLHDATDDEIMQELVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALAWVPE 1537
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + HL E P Y LH LI GK+ C NC+
Sbjct: 1538 KANRDQTYYHLHERVP-----------------GPLKYALHVLLIKHGKM-CA----NCS 1575
Query: 596 A 596
A
Sbjct: 1576 A 1576
>gi|408403428|ref|YP_006861411.1| endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364024|gb|AFU57754.1| putative endonuclease III [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 223
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSI 496
L A++ EI + I G N+ AER+K L+ + G VP D D LL +
Sbjct: 69 LASADIDEIKKIIHSIGFYNIKAERIKQVSQMLISKFGG-------RVPSDI--DSLLKL 119
Query: 497 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ CV + A PVD +V RI+ RLG V + PE + L +L +
Sbjct: 120 PGVGRKTANCVLVYAFDKPAIPVDVHVHRISNRLGLVSTKT-PEQTEQDLSKL------V 172
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ LW + ++ + +G+ C +PNC AC ++ CR++
Sbjct: 173 DRKLWTK-----------VNDTFVMYGQNICLPVRPNCKACDLKKMCRYY 211
>gi|229581431|ref|YP_002839830.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
gi|228012147|gb|ACP47908.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
Length = 233
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A++ +I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
L +LH+ LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 -----------------LLQLHHLLIAHGRQICKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|326510563|dbj|BAJ87498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ +AI+ G+ A R++ L + + G+I LE+LRD+ D+ K L +G+G K+V
Sbjct: 125 LEDAIRCGGLAATKAARIRAMLRGVREKRGAICLEYLRDLSVDEVKRELSQFKGIGPKTV 184
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
CV + L FPVDT+V RI LGWVP E +H+
Sbjct: 185 ACVLMFYLQKDDFPVDTHVLRITKALGWVPPTATREKAYIHM 226
>gi|224133424|ref|XP_002321564.1| predicted protein [Populus trichocarpa]
gi|222868560|gb|EEF05691.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 34/183 (18%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A K I +AI+ G+ A +++ L+ L+ + G + LE+LRD+P + K L
Sbjct: 144 WENVLAAESKFIEDAIRCGGLAPTKAACIRNILSSLMEKKGRLCLEYLRDLPVAEIKAEL 203
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+G+G K+V CV + L FPVDT+V IA +GWVP PV
Sbjct: 204 SHFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKAIGWVP----------------PVA 247
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQ----LITFGKVF--CTK-------SKPNCNACPMR 600
+ + YL L+ R EL + L T GK+ CTK + + ++CP+
Sbjct: 248 DRNKTYL-----HLNHRIPKELKFDLNCLLYTHGKLCRKCTKKSGSQQRKETHDDSCPLL 302
Query: 601 GEC 603
C
Sbjct: 303 NYC 305
>gi|328858824|gb|EGG07935.1| hypothetical protein MELLADRAFT_77474 [Melampsora larici-populina
98AG31]
Length = 371
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 387 NPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSR------DRMDSLDYEALRCA 440
NP I+ ++ GE N ++ +R + +N+ +R +R + ++E +R +
Sbjct: 145 NPKINNLGTAESCGEVSNILEAL-IRTILSQNTSTSNSNRAYSKIIERYGNANFEDIRKS 203
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+KE++E I+ G+ ++ + LN+++ + G + L+ LR + ++ L+ G+
Sbjct: 204 GIKELTETIRVGGLAERKSKVIITILNQIISKGDGILSLDKLRLMSDEQVMQELVEFDGV 263
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
G+K+ CV + L FPVDT+V R++ LGWVP + + HL
Sbjct: 264 GIKTGACVSMFCLGRDTFPVDTHVHRLSKSLGWVPPKATRDQTFFHL 310
>gi|452208019|ref|YP_007488141.1| endonuclease III [Natronomonas moolapensis 8.8.11]
gi|452084119|emb|CCQ37452.1| endonuclease III [Natronomonas moolapensis 8.8.11]
Length = 271
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDYLLSIRGLGL 501
E++E I G+ N ++R+ D R++ E+G ++R+ PP + ++ LL + G+G
Sbjct: 97 ELAETISSAGLYNQKSKRIIDIAERVLAEYGDTAGFDRFVREEPPSEVRETLLEMNGVGP 156
Query: 502 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L FPVDT+V RIA RLG P E+++ ++++ +
Sbjct: 157 KTADCVLLFAGGRGGVFPVDTHVHRIARRLGIAPADADHEAVR----------DALETAV 206
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
C H +I FG+ +CT P C +ACPM C
Sbjct: 207 PEEKCGFG-------HTAMIQFGREYCTARTPACLEDPDACPMADVCEQ 248
>gi|310800884|gb|EFQ35777.1| base excision DNA repair protein [Glomerella graminicola M1.001]
Length = 389
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 418 NSGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
NS + +RS D + S ++E + V ++ EAIK G++ + ++ + LN++ ++GS
Sbjct: 200 NSTRAKRSMDAVYGGSDEWEKIVEGGVHKLQEAIKCGGLSQVKSKVIIGILNQVKEKYGS 259
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
L+ L + ++A L+S +G+G K+ CV L L +F VDT+V RI LGW P
Sbjct: 260 YTLDHLFNATNEEAMQELISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLLGWRPK 319
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKPN 593
+ HL P Y LH L+ GKV C +
Sbjct: 320 SASRDETHAHLDVRIP-----------------DEDKYGLHILLVKHGKVCDECKAGGKS 362
Query: 594 CNACPMRGECR 604
C +R R
Sbjct: 363 IGKCELRKAFR 373
>gi|374633877|ref|ZP_09706242.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373523665|gb|EHP68585.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 229
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 22/180 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+ L A+++EI++AI+ G++N A+ +++ +++++ E LE + + PDKA++ L+
Sbjct: 62 DKLASASIEEIAKAIRPAGLHNNKAKNIRE-ISKIIHESFHDLLEDILNQSPDKAREILV 120
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ + V L+ + FPVDT++ RI+ RLG Y +
Sbjct: 121 SMPGIGTKTADVVLLICKGYRTFPVDTHIFRISRRLGIEGRN-------------YSEIS 167
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
S+ W R K H LIT G+ C KP C C + C+++ S R
Sbjct: 168 SV----WVRHVK----DPLNAHLLLITHGRKTCKAVKPKCQECVLIDCCQYYLGVLRSER 219
>gi|227828269|ref|YP_002830049.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|229579909|ref|YP_002838308.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238620462|ref|YP_002915288.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
gi|227460065|gb|ACP38751.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|228010624|gb|ACP46386.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238381532|gb|ACR42620.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
Length = 233
Score = 70.5 bits (171), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A++ +I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
L +LH+ LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 -----------------LLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|227831027|ref|YP_002832807.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284998523|ref|YP_003420291.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
gi|227457475|gb|ACP36162.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284446419|gb|ADB87921.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
Length = 233
Score = 70.5 bits (171), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A++ +I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
L +LH+ LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 -----------------LLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|170288346|ref|YP_001738584.1| HhH-GPD family protein [Thermotoga sp. RQ2]
gi|170175849|gb|ACB08901.1| HhH-GPD family protein [Thermotoga sp. RQ2]
Length = 220
Score = 70.5 bits (171), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 407 DWESLRKEVQ--RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
+W+++ + ++ +N+ K +DSL E +++E IK G N+ +R+K
Sbjct: 39 NWKNVERVMENIKNAVKGNNLLKELDSLPEE--------KVAELIKPAGFFNIKTKRLKA 90
Query: 465 FLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVG 524
L + ++E+ + +L LRD+P ++ LL I+G+G ++ + + L L F VD+
Sbjct: 91 LL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTR 148
Query: 525 RIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
R+ R+ + L E +L + YP D R E H ++ K
Sbjct: 149 RLLKRIFNIELNDYDEVQKLFMTH-YPE---------------DVRLYQEFHGLIVEHAK 192
Query: 585 VFCTKSKPNCNACPMRGECRHFA 607
FC K+ P C CP+R EC H +
Sbjct: 193 KFCNKT-PKCGVCPLRKECYHVS 214
>gi|296420260|ref|XP_002839693.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635887|emb|CAZ83884.1| unnamed protein product [Tuber melanosporum]
Length = 441
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE----------H 473
+ R ++D++A+R A++ ++ +I++ GM R+K+ L+ +E
Sbjct: 187 KGRSDAGTVDWDAVRRADLDDVVNSIRKGGMAPTKGRRIKNLLDAKRKEPLSNPDKDDED 246
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G + L+++ + D+A+ L S G+G K+ CV L L +F VDT+V R++ L WV
Sbjct: 247 GDLSLDYIHKLSDDEARQKLTSFDGVGPKTASCVMLFCLRRDSFAVDTHVFRLSKFLKWV 306
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
P + E+ HL P Y LH LI G+ C +
Sbjct: 307 PAKATRETTYAHLDVRVPAEHK-----------------YALHNLLIRHGRT-CKE---- 344
Query: 594 CNACPMRGECRHFASAFASARLALPGPEEKSI 625
C A P + +S + PGP + +
Sbjct: 345 CKAGPKHKGKKRVSSETSLDLSPEPGPRMRKV 376
>gi|380494482|emb|CCF33119.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 385
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 418 NSGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
NS + +RS D + S ++E + V ++ EAIK G++ + ++ + LN++ ++GS
Sbjct: 196 NSTRAKRSMDAVYGGSDEWERIVDGGVSKLQEAIKCGGLSQVKSKVIIGILNQVREKYGS 255
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
L+ L + + A L+S +G+G K+ CV L L +F VDT+V RI +GW P
Sbjct: 256 YSLDHLFNASNEDAMQELISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLMGWRPR 315
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKPN 593
+ HL P Y LH L+ GKV C +
Sbjct: 316 SASRDETHAHLDVRIP-----------------DEDKYGLHILLVKHGKVCAECKAGGKS 358
Query: 594 CNACPMRGECRH 605
C +R R
Sbjct: 359 VGKCELRKAFRQ 370
>gi|448419884|ref|ZP_21580728.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
gi|445674798|gb|ELZ27335.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
Length = 283
Score = 70.1 bits (170), Expect = 5e-09, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 36/238 (15%)
Query: 373 VEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSL 432
V +LS + + P +R + GE ++A E +R+R D
Sbjct: 54 VRTILSQNTSDVASQPAHDSLMERYSSGEARSA----------SETRAGSEATRERSDLA 103
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAK 490
E+L A E++E I G+ N +E + R+ E G D ++ P + +
Sbjct: 104 --ESLAAAEQSELAETISSAGLYNQKSEMIIGAAERICEEFGGADGFDAFVTGGDPGEVR 161
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ LL I G+G K+ +CV L + FPVDT+V RIA R+G P E+++ HL
Sbjct: 162 ERLLDIHGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEAVREHLERD 221
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
P + C H +I FG+ +CT KP C ACP+ C
Sbjct: 222 VPAEK----------CGFG-------HTAMIQFGREYCTARKPACLDGPEACPLYDLC 262
>gi|429220080|ref|YP_007181724.1| endoIII-related endonuclease [Deinococcus peraridilitoris DSM
19664]
gi|429130943|gb|AFZ67958.1| putative endoIII-related endonuclease [Deinococcus peraridilitoris
DSM 19664]
Length = 263
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
+ +E + A+V ++EAI + A ++ L + G ++++L D+P ++
Sbjct: 96 VSWEGVEQADVTALAEAISPSNFAEVKAPNIQRTLRAIREARGEYNIDFLADLPVEEGLR 155
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+LL++ G+GLK+ V L PVDT+V R++ R+G + + + E+ LL L P
Sbjct: 156 WLLALPGVGLKTATLVLLFCFRKSVLPVDTHVHRVSQRVGLIGPKVMHEAAHRLLLALLP 215
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ LY H L+T G+ CT S+P C+ C +R C ++
Sbjct: 216 PEPA---------------LLYNFHLNLLTHGQKICTFSRPRCSKCVLREVCDYY 255
>gi|378733828|gb|EHY60287.1| endonuclease III [Exophiala dermatitidis NIH/UT8656]
Length = 442
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+EA+ ++ EAIK G++ + ++ + LN++ ++G L+ L + A +
Sbjct: 258 WEAIAAGGQAKLQEAIKSGGLSAVKSKVIISILNQVYEKYGVYSLDHLHSASSEDAMREM 317
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
LS +G+G K+ CV L L +F VDT+V RI LGW P + E Y L
Sbjct: 318 LSFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLLGWRPKSASRD-------ETYAHL 370
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKPNCNACPMRGECR 604
+S K+ Y LH L+T GK C N C +R R
Sbjct: 371 DS----------KIPDEDKYGLHILLVTHGKRCDECKAGGKNLGRCELRKAFR 413
>gi|15643148|ref|NP_228192.1| repair endonuclease [Thermotoga maritima MSB8]
gi|4980885|gb|AAD35467.1|AE001718_4 repair endonuclease, putative [Thermotoga maritima MSB8]
Length = 232
Score = 70.1 bits (170), Expect = 6e-09, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 409 ESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNR 468
E+++ EV+ N+ +E +DSL E +++E I+ G N+ +R+K+ L +
Sbjct: 60 ENIKNEVKGNNLLKE-----LDSLPEE--------KVAELIRPAGFFNIKTKRLKELL-K 105
Query: 469 LVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 528
++E+ + +L LRD+P ++ LL I+G+G ++ + + L L F VD+ R+
Sbjct: 106 FLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPVFVVDSYTRRLLK 164
Query: 529 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCT 588
R+ + L E +L + YP D R E H ++ K FC+
Sbjct: 165 RIFNIELNDYDEVQKLFMTH-YPE---------------DVRLYQEFHGLIVEHAKKFCS 208
Query: 589 KSKPNCNACPMRGECRHFA 607
K+ P C CP++ EC H +
Sbjct: 209 KT-PKCGVCPLKKECCHVS 226
>gi|225457138|ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vinifera]
Length = 310
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 62/118 (52%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ + A+ K I AI+ G+ A +K L+ L+ G + LE+LRD+ D+ K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+G+G K+V CV + L FPVDT+V +I +GWVP + LHL P
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHLNRRIP 256
>gi|119872647|ref|YP_930654.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
gi|119674055|gb|ABL88311.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
Length = 222
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
E + R+ ++ E+L + E++E IK GM A +K+ ++ I + L
Sbjct: 53 ENLKMRLGTITPESLNKMSEGELAELIKPAGMYRQRARVLKNLAETFLKY--DITPQRLL 110
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
++ ++A+ +LL++ G+G K+ + + L+ L AFPVDT++ RIA R G
Sbjct: 111 EMGAERARAFLLTLPGVGKKTADVI-LVNLGLPAFPVDTHITRIARRWG----------- 158
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+ + I ++ RL Q ELH +LI FG+ C P C+ CP+
Sbjct: 159 ------IGKSYDEISRWFIERL---PQHKYLELHLKLIQFGREICKARNPKCDVCPIGQR 209
Query: 603 CRHFASA 609
C + SA
Sbjct: 210 CPSYKSA 216
>gi|42557689|emb|CAF28664.1| putative endonuclease III [uncultured crenarchaeote]
Length = 219
Score = 69.7 bits (169), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 27/176 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A +K+I ++I G N+ A+R+K + L+ + S VP + +
Sbjct: 69 DIDGISKAELKDIRDSIHSIGFYNIKAKRIKQVVQLLIEKFDS-------KVPSNLEE-- 119
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL++ G+G K+ CV + + A PVD +V RI+ RLG V + + E+ +L L +
Sbjct: 120 LLTLPGVGRKTANCVLVYAFNQPAIPVDVHVHRISNRLGIVNTRKVEET-ELELCNI--- 175
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
I K +W E++ +T+G+ C KP CN C ++ C+ + S
Sbjct: 176 ---IDKEMW-----------IEVNDTFVTYGQNVCLPIKPKCNICQLKKMCKFYKS 217
>gi|448561313|ref|ZP_21634665.1| endonuclease III [Haloferax prahovense DSM 18310]
gi|445721545|gb|ELZ73213.1| endonuclease III [Haloferax prahovense DSM 18310]
Length = 268
Score = 69.7 bits (169), Expect = 7e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEADFDRYVREEVPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FCT KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVC 248
>gi|385776592|ref|YP_005649160.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
gi|323475340|gb|ADX85946.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
Length = 233
Score = 69.7 bits (169), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A++ I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDADLSNIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
L +LH+ LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 -----------------LLQLHHLLIAHGRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|159898923|ref|YP_001545170.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
gi|159891962|gb|ABX05042.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
Length = 222
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 417 RNSGKQERS-RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RNSG+ R + R + + A+ A E+ E I+ G+ + A R+++ L ++ + G
Sbjct: 45 RNSGRAFRELKGRYPT--WAAVLNAESSELEETIRVGGLAKIKAARIQNTLAVILEQRGE 102
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
L++LR++ +A+ +L ++ G+G K+ CV + A VDT++ R+A R+G +
Sbjct: 103 FSLDFLRELGLHEARAWLTALPGIGPKTAGCVLCFACNQPAMIVDTHIHRVAKRVGMIGP 162
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ ++ L PV DQ +Y+ H ++ G+ C +P C
Sbjct: 163 KVSADAAHDLLESAVPV---------------DQ--MYQFHVSVLLHGRQICHAQRPACE 205
Query: 596 ACPMRGECRHF 606
CP+ C +
Sbjct: 206 RCPLTEICDFY 216
>gi|260892299|ref|YP_003238396.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
gi|260864440|gb|ACX51546.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
Length = 240
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+E++E ++ G++ R L L RE DL+ L ++P +A+ LL + G+G K
Sbjct: 85 QELAEILRPVGLHR----RKAKLLRTLAREVVDFDLKALSNLPTFEARQRLLRLPGVGPK 140
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ + V LL L H FPVDT++ RI RL W +P E +Q +EL+ S + Y
Sbjct: 141 TAD-VLLLHLGHPLFPVDTHIARITWRLSWAK-RPCYEEIQKVWMELF----SPEDY--- 191
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E H +LI +G+ C KP C C +R C
Sbjct: 192 ----------QEAHLRLIQWGREICQARKPRCFTCFLRICC 222
>gi|385810254|ref|YP_005846650.1| endonuclease III [Ignavibacterium album JCM 16511]
gi|383802302|gb|AFH49382.1| Putative endonuclease III [Ignavibacterium album JCM 16511]
Length = 236
Score = 69.7 bits (169), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + +I IK G+ A+ +K+ L L + HG + L L+ D+ D L
Sbjct: 60 WEDVLSLKTSQIERIIKVAGLGKQKAKAIKNLLKNLKKYHGKLSLTHLKKKSDDEVLDEL 119
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ +G+G+K+ CV L PVDT+V RI R+G V PE
Sbjct: 120 ILHKGIGVKTASCVLLFAFDRNVCPVDTHVHRILNRVGVVETSN-PEK----------TF 168
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
I+ + + + + H L+ G+ +CT + P C CP+ C + F
Sbjct: 169 NEIKSH-------IPKGAAHSFHTNLLRLGREYCTPTNPKCYECPIENVCNYKEKNFTIK 221
Query: 614 RL 615
+L
Sbjct: 222 KL 223
>gi|337287836|ref|YP_004627308.1| HhH-GPD family protein [Thermodesulfobacterium sp. OPB45]
gi|334901574|gb|AEH22380.1| HhH-GPD family protein [Thermodesulfobacterium geofontis OPF15]
Length = 218
Score = 69.7 bits (169), Expect = 7e-09, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
+ D LD L ++ +S+ IK G N A+R+K+F+ L+ + DL L
Sbjct: 57 KKDLLDPFKLYNIPLESLSQIIKPSGFYNTKAKRLKNFVKFLIENYQG-DLNILFSKGLK 115
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
KA++ LL+I+GLG ++V+ + L + F VD RI R VP + E +Q +
Sbjct: 116 KAREELLNIKGLGKETVDSILLYAGNLPIFVVDAYTYRILHRHSLVPEEATYEEMQALFM 175
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
E P D + E H L+ GK FC K +P C CP++
Sbjct: 176 ENLP---------------QDPQLFNEFHALLVACGKNFCKKKEPLCETCPLK 213
>gi|395217179|ref|ZP_10401538.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
gi|394455098|gb|EJF09644.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
Length = 235
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+E + A E+++A+ A +++ L + + G I++++L D+P D+A +
Sbjct: 65 DWEGVLNAPEDELADAVSTTRYPLQKAPQIQQTLRMIKEDRGEINIDFLADLPIDEAMAW 124
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ + L PVDT+V R++ R+G + + LLE+ P
Sbjct: 125 LTRLPGVGPKTATLLLLFNFKKPVLPVDTHVFRVSQRVGLIGAKITANKAHDVLLEMLPK 184
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
D L+ H L G+ CT S P C C + G C +++ A
Sbjct: 185 ---------------DATELFNFHKHLFWHGQKVCTWSYPKCEKCVLNGICNYYSQVRAK 229
Query: 613 A 613
Sbjct: 230 G 230
>gi|147845261|emb|CAN79062.1| hypothetical protein VITISV_036428 [Vitis vinifera]
Length = 449
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 51/66 (77%)
Query: 520 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQL 579
DTN+GRI +LG VP QPL E LQL+LLEL +LE IQKYL RLCKLD TLYE YQL
Sbjct: 343 DTNIGRIXEKLGXVPFQPLLEPLQLYLLELCHMLEFIQKYLLLRLCKLDXXTLYEQCYQL 402
Query: 580 ITFGKV 585
ITFGK+
Sbjct: 403 ITFGKI 408
>gi|448582052|ref|ZP_21645556.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
gi|445731700|gb|ELZ83283.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
Length = 268
Score = 69.7 bits (169), Expect = 8e-09, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS---IDLEWLRDVPPDKAKD 491
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D ++R+ P +D
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEAGFD-RYVREEDPSTVRD 148
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L
Sbjct: 149 RLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDI 208
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
P D++ + H +I FG+ FCT KP C ACPM C
Sbjct: 209 P----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVC 248
>gi|345560267|gb|EGX43392.1| hypothetical protein AOL_s00215g128 [Arthrobotrys oligospora ATCC
24927]
Length = 531
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVR-------EHGSIDLEWLRDVPPDKAKDYL 493
+VKE+ +AI++ G+ N+ ++ +K L + + G I L++L + D+ + L
Sbjct: 182 DVKELYKAIEKGGLANIKSKAIKGILEEVCEGTKKRGGKDGEISLDYLHEKGDDEVMETL 241
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
+ +G+G+K+ CV + L AFPVDT+V RI+ LGWVP
Sbjct: 242 MGFKGVGVKTATCVLMFCLRRSAFPVDTHVFRISKLLGWVP 282
>gi|448542485|ref|ZP_21624719.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|448549955|ref|ZP_21628560.1| endonuclease III [Haloferax sp. ATCC BAA-645]
gi|445707085|gb|ELZ58948.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|445713003|gb|ELZ64784.1| endonuclease III [Haloferax sp. ATCC BAA-645]
Length = 270
Score = 69.3 bits (168), Expect = 8e-09, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIIEAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FCT KP C +ACP+ C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPLYDLC 248
>gi|418046315|ref|ZP_12684409.1| HhH-GPD family protein [Thermotoga maritima MSB8]
gi|351675868|gb|EHA59028.1| HhH-GPD family protein [Thermotoga maritima MSB8]
Length = 220
Score = 69.3 bits (168), Expect = 8e-09, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 409 ESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNR 468
E+++ EV+ N+ +E +DSL E +++E I+ G N+ +R+K+ L +
Sbjct: 48 ENIKNEVKGNNLLKE-----LDSLPEE--------KVAELIRPAGFFNIKTKRLKELL-K 93
Query: 469 LVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 528
++E+ + +L LRD+P ++ LL I+G+G ++ + + L L F VD+ R+
Sbjct: 94 FLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPVFVVDSYTRRLLK 152
Query: 529 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCT 588
R+ + L E +L + YP D R E H ++ K FC+
Sbjct: 153 RIFNIELNDYDEVQKLFMTH-YPE---------------DVRLYQEFHGLIVEHAKKFCS 196
Query: 589 KSKPNCNACPMRGECRHFA 607
K+ P C CP++ EC H +
Sbjct: 197 KT-PKCGVCPLKKECCHVS 214
>gi|356513571|ref|XP_003525486.1| PREDICTED: endonuclease III-like [Glycine max]
Length = 284
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A K++ AI+ G+ A +K+ L L G + LE+LRD+ D+ K L
Sbjct: 117 WEQVLWAESKDVENAIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAEL 176
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+G+G K+V CV + L FPVDT++ IA +GWVP LHL + P
Sbjct: 177 SLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTMGWVPAVANRNKSYLHLNQRVP 234
>gi|448346319|ref|ZP_21535205.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
gi|445632908|gb|ELY86114.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
Length = 310
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 24/191 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A ++E I G+ N +E + D ++ E GS +++D P ++
Sbjct: 126 ESLASAEQSTLAETISGAGLYNQKSETLIDTAEWVLEEFGSAPAFDAFVKDEGPSIVRET 185
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LLS+RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 186 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 237
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
E +++ + C H I FG+ +C KP C +ACPM C
Sbjct: 238 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 288
Query: 608 SAFASARLALP 618
A+ + P
Sbjct: 289 VFPATGEVVDP 299
>gi|380484040|emb|CCF40248.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 361
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
+ +YEA+ + ++ +A++ GM N A+ + L+ + HG DL+ L + ++A
Sbjct: 187 TFNYEAIVEGGMDKLVDALRPGGMQNRKAKILMRLLHDVKERHGKWDLQHLFNASDEEAV 246
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
++S GLG K C+ + L AF VDT++ RI GW P E Q HL
Sbjct: 247 KEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHIYRITGLWGWRPKDASKELAQAHLDARI 306
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
P Y LHYQ I G+ C AC G+ + A
Sbjct: 307 P-----------------NEIKYALHYQFIVHGR--------QCPACRGNGDSK----AR 337
Query: 611 ASARLALPGPEEKS 624
++AL E+KS
Sbjct: 338 CEYKVALKEVEKKS 351
>gi|297733838|emb|CBI15085.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ + A+ K I AI+ G+ A +K L+ L+ G + LE+LRD+ D+ K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
+G+G K+V CV + L FPVDT+V +I +GWVP + LHL
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHL 251
>gi|357124677|ref|XP_003564024.1| PREDICTED: endonuclease III-like [Brachypodium distachyon]
Length = 277
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G+I LE+LR++ D+ K L +G+G K
Sbjct: 118 KGLEDAIRCGGLAATKAARIRAMLRDVRERRGAICLEYLRELSVDEVKRELSQFKGIGPK 177
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
++ CV + L FPVDT+V RI +GWVP E +HL
Sbjct: 178 TMACVLMFYLQKDDFPVDTHVLRITKAIGWVPSTATREKAYIHL 221
>gi|399575316|ref|ZP_10769074.1| endoiii-related endonuclease [Halogranum salarium B-1]
gi|399239584|gb|EJN60510.1| endoiii-related endonuclease [Halogranum salarium B-1]
Length = 265
Score = 69.3 bits (168), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIR 497
A E++E I+ G+ N +E + +V E G D E++R+ P + LL I
Sbjct: 93 AEQSELAETIQSAGLYNQKSEMIVGAAEEIVDEFGGADEFDEFVREEDPQTVRTRLLEIH 152
Query: 498 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ +CV L + FPVDT+V RIA R+G P E ++ HL P +
Sbjct: 153 GVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEEVREHLERDVPAEK-- 210
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H +I FG+ +CT KP C ACP+ C
Sbjct: 211 --------CGFG-------HTAMIQFGREYCTARKPACLDGPEACPLYDLC 246
>gi|284036648|ref|YP_003386578.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
gi|283815941|gb|ADB37779.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
Length = 241
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E +R A + ++ +AI+ + A +++ L L RE G ++++L + + A +L
Sbjct: 65 WEQVRDAPLPDLIDAIRSANYPEIKAPYIQNLLTHLFRETGQANVDFLGQLSTEDAMAWL 124
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ G+G+K+ + L PVDT+V R+ RLG + + E LL P
Sbjct: 125 TKLPGIGMKTATILLLFKFQKPVLPVDTHVHRVTQRLGLIGPKVSAEKAHTILLSYLP-- 182
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
LD L+ H G+ CT P C+ C ++ C ++ S
Sbjct: 183 -------------LDALVLFNFHKHFYWHGQRVCTWYFPKCSECVLQTMCDYYQSG 225
>gi|359417776|ref|ZP_09209845.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
gi|358031869|gb|EHK00704.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
Length = 215
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+E +R A+ +E+ + I+ G+ AER+++ LN + E GS +E+L ++ D+ K +
Sbjct: 61 DFEEIRYADKEELIDTIRIAGLGPTKAERIQEALNIIYEEEGSYSVEFLDELSLDEGKKW 120
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L I G+G K+ + PVDT+V R+A R G VP + + +
Sbjct: 121 LTDIPGIGPKTASVILGFHFKKPTIPVDTHVHRLANRYGLVPEGSSRKR-------THDI 173
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE K+ Y H LI G+ C SK C C + E R
Sbjct: 174 LEE----------KVPDEIKYSFHRLLIEHGRAECKASKDECQ-CELCEEYR 214
>gi|383318935|ref|YP_005379776.1| EndoIII-related endonuclease [Methanocella conradii HZ254]
gi|379320305|gb|AFC99257.1| putative EndoIII-related endonuclease [Methanocella conradii HZ254]
Length = 291
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRD 483
R + R +D + CA+ +E+ E I+ G A M + +R + E LEW+R
Sbjct: 118 RLQRRYKGIDVHKMACADKRELEELIRFSGPYK--ASYMIE-CSRQIEERWGGSLEWMRR 174
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 543
P D+A+ LLS+ G+G K+ +CV L +L H PVDT++ R++ RLG L S+
Sbjct: 175 APTDEARRALLSLHGVGPKTADCVLLFSLGHSVVPVDTHICRVSQRLG------LSMSMG 228
Query: 544 LHLLELYPVLESIQKYL-WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
V E +++ L P + H +I G+ FC P + CP+
Sbjct: 229 DSEAAKRRVKEDLERGLKMPGMA----------HLLIINLGRDFCKALAPLHHICPVEEL 278
Query: 603 C 603
C
Sbjct: 279 C 279
>gi|258406277|ref|YP_003199019.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
gi|257798504|gb|ACV69441.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
Length = 218
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
+WE++R+ + + S + +LD E E++ I+ G + A R+K+FL
Sbjct: 44 NWENVRRALNALRAQNLLSAPALAALDTE--------ELAALIRPAGYYRVKAGRIKNFL 95
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
R D L+ +P + ++ LL + G+G ++ + + L L F VDT RI
Sbjct: 96 -RFFEHEAGFDFTVLQALPTPEIRERLLGVNGIGPETADSIALYALDKPTFVVDTYTARI 154
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
R G +P + LQ + E P D E H Q++ GK +
Sbjct: 155 FGRHGQIPEEISYADLQAYFTEALPE---------------DTALFNEFHAQIVRVGKHW 199
Query: 587 CTKSKPNCNACPM 599
C K +P C+ CP+
Sbjct: 200 CKKKQPQCHRCPL 212
>gi|292655041|ref|YP_003534938.1| endonuclease III [Haloferax volcanii DS2]
gi|448292657|ref|ZP_21483063.1| endonuclease III [Haloferax volcanii DS2]
gi|291372380|gb|ADE04607.1| endonuclease III [Haloferax volcanii DS2]
gi|445572413|gb|ELY26953.1| endonuclease III [Haloferax volcanii DS2]
Length = 268
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I EAI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FC KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMTDVC 248
>gi|116747801|ref|YP_844488.1| HhH-GPD family protein [Syntrophobacter fumaroxidans MPOB]
gi|116696865|gb|ABK16053.1| DNA-3-methyladenine glycosylase III [Syntrophobacter fumaroxidans
MPOB]
Length = 222
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L +EAL ++E I+ G N A ++K F R V E G L+ D +
Sbjct: 62 LSFEALCAVPEPLLAELIRSSGYYNQKARKLKAFC-RHVCETGHAGLDGFLAQDTDTLRS 120
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE-LY 550
LL IRG+G ++ + + L H +F VDT R+ R GWV P + L+ ++ L
Sbjct: 121 ELLRIRGVGPETADSIVLYAAHKPSFVVDTYTHRVFSRHGWVQESPSYDELRGFFMDCLE 180
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
P D ELH L+ G +FC K+ P C CP+ G
Sbjct: 181 P----------------DVGLFQELHALLVRTGHLFCRKT-PRCGGCPLEG 214
>gi|302680965|ref|XP_003030164.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
gi|300103855|gb|EFI95261.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
Length = 317
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 113/279 (40%), Gaps = 44/279 (15%)
Query: 339 VPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQV----LSAHKVYDETNPNIS-KS 393
VP S K L DD + + D P+ +V AH P+ S +
Sbjct: 25 VPPSSPHKAKKLKLQDDYATTSPFPDFPHPTPSDARRVHDLLTEAHGPRVRRTPDASSNA 84
Query: 394 KKRKADGEKKNAIDWESLRKEV--QRNSGKQERSRDRMDSLD-------YEALRCANVKE 444
K G N I ESL + Q SGK R SLD + A+ A
Sbjct: 85 NSAKTCGSVPNVI--ESLIGTILSQNTSGKNSSGAKR--SLDAAFGRNNFAAIADAPTSA 140
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD-KAKDYLLSIRGLGLKS 503
+++AI+ G+ N A ++ L + +HGS L+ L DV D + L++ G+G K+
Sbjct: 141 VADAIRSGGLANKKAATIQRVLRDIKAKHGSYSLQHLADVCADAEVMRELMAYDGVGPKT 200
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
CV L L +F VDT+V R++ LGWVP + Q HL P
Sbjct: 201 ASCVLLFCLGRESFAVDTHVFRLSKLLGWVPPKADRVQTQAHLDLRIPG----------- 249
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
D++ Y LH +I G++ C C +G+
Sbjct: 250 ----DRK--YGLHVLMIDHGRI--------CTGCKTKGK 274
>gi|70607241|ref|YP_256111.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
gi|68567889|gb|AAY80818.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
Length = 223
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 403 KNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERM 462
+N+ D +L + N E + DR ++ A++ I +AI+ G+ N A +
Sbjct: 45 QNSTDKSALIAFSKLNETVGEITPDR--------IKHADINTIIDAIRVAGLGNSKARYI 96
Query: 463 KDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 522
K+ + DL+ ++ K +D+L +I G+G K+ + V L FP+DT+
Sbjct: 97 KNVAEVIN------DLDLNIEIDCQKLRDFLTAIEGIGDKTADVVLLTCFRCREFPIDTH 150
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITF 582
+ R+ RLG+ L P + I +Y R D L LH+ LI
Sbjct: 151 IRRVISRLGF--------------LGSSPKYKDISEYFKTRFSSED---LLNLHHLLIAH 193
Query: 583 GKVFCTKSKPNCNACPMRGECRHF 606
G+ C KP C+ C +R C+++
Sbjct: 194 GRKTCKSRKPICDKCVIRDYCKYY 217
>gi|449067484|ref|YP_007434566.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449069758|ref|YP_007436839.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
gi|449035992|gb|AGE71418.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449038266|gb|AGE73691.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
Length = 225
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 403 KNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERM 462
+N+ D +L + N E + DR ++ A++ I +AI+ G+ N A +
Sbjct: 47 QNSTDKSALIAFSKLNETVGEITPDR--------IKHADINTIIDAIRVAGLGNSKARYI 98
Query: 463 KDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 522
K+ + DL+ ++ K +D+L +I G+G K+ + V L FP+DT+
Sbjct: 99 KNVAEVIN------DLDLNIEIDCQKLRDFLTAIEGIGDKTADVVLLTCFRCREFPIDTH 152
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITF 582
+ R+ RLG+ L P + I +Y R D L LH+ LI
Sbjct: 153 IRRVISRLGF--------------LGSSPKYKDISEYFKTRFSSED---LLNLHHLLIAH 195
Query: 583 GKVFCTKSKPNCNACPMRGECRHF 606
G+ C KP C+ C +R C+++
Sbjct: 196 GRKTCKSRKPICDKCVIRDYCKYY 219
>gi|403178239|ref|XP_003336685.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164069|gb|EFP92266.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 424
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 418 NSGKQERSRDR-MDSLDYEALRCANVKEISEAIKER--GMNNMLAERMKDFLNRL-VREH 473
NS + +++ D+ + +Y A+R A+V I+ +++ G+ + + LN + + +
Sbjct: 120 NSSRAKQALDQHFGTGNYHAIRRASVSSITAVLQDARVGLAARKSTTIHALLNHIHLNLN 179
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
+ LE+LR +P +A + L S +G+G K+ CV L L FPVDT+V RI LGW+
Sbjct: 180 PDLSLEFLRYLPDSEAMETLTSFKGVGAKTASCVLLFCLGRNFFPVDTHVFRITKALGWL 239
Query: 534 PLQPLP--ESLQLHLLELYP 551
P +P ES HL + P
Sbjct: 240 PPRPTATRESAFKHLNQAVP 259
>gi|159900799|ref|YP_001547046.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893838|gb|ABX06918.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
Length = 224
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
A ++ L +++ E G I +++L ++ + A +L +RG+G K+ V L P
Sbjct: 87 ANNIQAALAKILAERGEISIDFLAELSTEAAMAWLTGLRGVGPKTASLVLLFCFSKPILP 146
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VDT+V R++ RLG V + E+ ++ LW +L D L+ H
Sbjct: 147 VDTHVHRVSQRLGLVKAKTPTEAHEI---------------LW-QLLPHDAEWLFNYHVA 190
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
L+ G+ C +P CN CP+ +C
Sbjct: 191 LLRHGQRICLAKRPRCNQCPLTAQC 215
>gi|433638876|ref|YP_007284636.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
gi|433290680|gb|AGB16503.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
Length = 296
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIR 497
A+ +EI+E I G+ N + +++ + E G+ ++R+ P +D LLS+
Sbjct: 124 ADREEIAETISAAGLYNQKSRMIQEAAEWVRTEFGTAPAFDAYVRETAPATVRDELLSVH 183
Query: 498 GLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ +CV L +PVDT+V RI+ RLG P + E ++ E++
Sbjct: 184 GVGPKTADCVLLFAGGQDGVYPVDTHVHRISRRLGIAPPEAGHEGVR----------EAL 233
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ + C H +I FG+ +CT KP C ACP+ GEC
Sbjct: 234 ETTVPGPKCGFG-------HTAMIQFGREYCTARKPACLDGTEACPLAGEC 277
>gi|332796258|ref|YP_004457758.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
gi|332693993|gb|AEE93460.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
Length = 232
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 20/168 (11%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++++I+ I+ G+ + AER+K+ L ++++E + DL + D P +A++ LLS+ G+
Sbjct: 74 SSLEDIASCIRNIGIYRIKAERIKE-LAKIIKEKYNGDLNKILDKEPKEAREELLSLPGI 132
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ + V L + FPVDT++ RI+ RLG E + L+ L+
Sbjct: 133 GEKTADVVLLTCKGYPYFPVDTHIKRISQRLGIASGS--YEQISASLMRLF--------- 181
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
D + E H+ LI G+ C P C C + C +++
Sbjct: 182 --------DPKDYLEAHHLLIAHGRNVCKAKNPLCEKCILNDCCEYYS 221
>gi|145590366|ref|YP_001152368.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282134|gb|ABP49716.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
Length = 218
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+ R+ S+ E+LR ++ E+ E IK GM A +K + + I E L +
Sbjct: 57 KKRLGSITPESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMG 114
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D A+ L+S+ G+G K+ + V L L AFPVDT++ RIA R G
Sbjct: 115 ADAARKLLMSLPGVGRKTADVV-LANLGLPAFPVDTHITRIAKRWG-------------- 159
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ E I ++ +L K +R L E H +LI FG+ C P C CP+ C
Sbjct: 160 ---VGSRYEDISRWFMEQLPK--ERYL-EFHLKLIQFGRDICRARNPRCEECPIGERCPS 213
Query: 606 F 606
F
Sbjct: 214 F 214
>gi|410464085|ref|ZP_11317553.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409982800|gb|EKO39221.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 216
Score = 67.8 bits (164), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD AL A+++ ++E I+ G + A R+K+ + +V + G DL L +A+D
Sbjct: 60 LDPYALHAASLEAVAEPIRPAGHFRVKAGRLKNLMALIVEDLGG-DLTALAGYDLGQARD 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL+++G+G ++ + + L L+ AF VD RI R G VP + L+ ++ P
Sbjct: 119 KLLAVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLVPEDAGYDELRELFMDALP 178
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
E + Y E H L+ G +C P C ACP+
Sbjct: 179 --EDVGLY-------------NEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|389846321|ref|YP_006348560.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|448616059|ref|ZP_21664769.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|388243627|gb|AFK18573.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|445750714|gb|EMA02151.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
Length = 268
Score = 67.8 bits (164), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A+ + I +AI+ G+ N ++ ++ ++ + GS D ++R+ P +D
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNQKSKLIQGVAEEVLADFGSEDDFDRYVREADPSTVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA RLG P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGVAPADADHEGVRAALEREVP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
+ C H +I FG+ FC KP C + CPM C
Sbjct: 210 AEK----------CGFG-------HTAMIQFGREFCKARKPVCLDGKDECPMADVCEKVG 252
Query: 608 SAFASARLALPG 619
A + P
Sbjct: 253 VDVAGQSVVDPA 264
>gi|323507809|emb|CBQ67680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 638
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 26/186 (13%)
Query: 417 RNSGKQERS-RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RNS RS + ++ A+ A E+ +AI+ G+ N A +K L + + +HG
Sbjct: 183 RNSAAAHRSMTEHFGRANWAAIHAAPESELVDAIRCGGLANNKARTIKGILAQTLEKHGK 242
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ L+ L D D L++ G+G K CV + + VDT+V R+ LGWVP
Sbjct: 243 LSLDHLHDASDDDIMQQLVAFNGVGPKVASCVLAFCIGRDSMAVDTHVFRLCKALGWVPD 302
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + HL E P Y LH LI GK C
Sbjct: 303 KANRDQTYYHLHERVP-----------------GHLKYALHVLLIAHGK--------RCA 337
Query: 596 ACPMRG 601
C +G
Sbjct: 338 NCSAKG 343
>gi|448391644|ref|ZP_21566739.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
gi|445665056|gb|ELZ17734.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
Length = 274
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/203 (29%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 427 DRMDSLDY---EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWL 481
DR S D E+L A ++E I G+ N +E + ++ E GS ++
Sbjct: 79 DRYGSPDVDLAESLAAAERSRLAETISSAGLYNQKSEVLIRTAEWILEEFGSAAAFDAFV 138
Query: 482 RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPE 540
+D P + +D LLS+RG+G K+ +CV L FPVDT+V RI R+G P E
Sbjct: 139 KDEEPAEVRDTLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHE 198
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NA 596
++ L P + C H I FG+ +CT KP C +A
Sbjct: 199 DVRAVLEREVPAAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDA 241
Query: 597 CPMRGECRHFASAFASARLALPG 619
CPM C A+ + P
Sbjct: 242 CPMADVCDQVGVYPATGEVVDPA 264
>gi|282164121|ref|YP_003356506.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282156435|dbj|BAI61523.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 225
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 28/198 (14%)
Query: 418 NSGKQERSRDRMDSLDYEAL--------RCANVKE--ISEAIKERGMNNMLAERMKDFLN 467
N+ + + DR S+ ++ L + AN E I+E IK G+ + A R+K+ ++
Sbjct: 34 NTILSQNTTDRNSSVAFQRLFSVYDTPKKLANAPEDKIAELIKIGGLYTIKARRIKE-IS 92
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
RL+ + D++++ P+ A+ LLSI G+G K+ +CV L PVDT+V R+
Sbjct: 93 RLILDDYGGDIDFVCTANPEAARKELLSIEGVGPKTADCVLLFACGDDVIPVDTHVFRVT 152
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
RLG VP + E L+E P +R +H LI FG+ C
Sbjct: 153 KRLGIVPEKADHEETHRILMENVPA---------------GKRG--SVHVDLIRFGREIC 195
Query: 588 TKSKPNCNACPMRGECRH 605
P + C + C +
Sbjct: 196 RAQSPKHDECFLIDVCDY 213
>gi|148269671|ref|YP_001244131.1| HhH-GPD family protein [Thermotoga petrophila RKU-1]
gi|281411619|ref|YP_003345698.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
gi|147735215|gb|ABQ46555.1| DNA-3-methyladenine glycosylase III [Thermotoga petrophila RKU-1]
gi|281372722|gb|ADA66284.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
Length = 220
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 407 DWESLRKEVQ--RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
+W+++ + ++ +N+ K +DSL E +++E I+ G N+ +R+K
Sbjct: 39 NWKNVERVMENIKNAVKGNNLLKELDSLPEE--------KVAELIRPAGFFNIKTKRLKA 90
Query: 465 FLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVG 524
L + ++E+ + +L LRD+P ++ LL I+G+G ++ + + L L F VD+
Sbjct: 91 LL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTR 148
Query: 525 RIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
R+ R+ + L E +L + YP D R E H ++ K
Sbjct: 149 RLLKRIFNIELNDYDEVQRLFMTH-YPE---------------DVRLYQEFHGLIVEHAK 192
Query: 585 VFCTKSKPNCNACPMRGECRHFA 607
FC+K+ P C CP++ EC H +
Sbjct: 193 KFCSKT-PKCGVCPLKKECCHVS 214
>gi|409074630|gb|EKM75023.1| hypothetical protein AGABI1DRAFT_24137, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 235
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP------- 485
++EA+ A +++ +AI+ G+ N A ++ L + +HGS L+ L P
Sbjct: 82 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 141
Query: 486 ---PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
D+ D LLS G+G K+ CV L + +FPVDT+V R++ LGW+P + +
Sbjct: 142 ALGDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTA 201
Query: 543 QLHL 546
Q HL
Sbjct: 202 QAHL 205
>gi|448625246|ref|ZP_21671013.1| endonuclease III [Haloferax denitrificans ATCC 35960]
gi|445749008|gb|EMA00454.1| endonuclease III [Haloferax denitrificans ATCC 35960]
Length = 258
Score = 67.4 bits (163), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I +AI+ G+ N ++ ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FC KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMADVC 248
>gi|403170480|ref|XP_003329823.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168743|gb|EFP85404.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 400 GEKKNAIDWESLRKEVQR-NSGKQERSRDR-MDSLDYEALRCANVKEISEAIKER--GMN 455
GE + + L + R NS + +++ D+ + +Y A+R A+V I+ +++ G+
Sbjct: 99 GEVLDGLVRTILSQHTSRANSSRAKQALDQHFGTGNYHAIRRASVSSITAVLQDARVGLA 158
Query: 456 NMLAERMKDFLNRL-VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH 514
+ + LN + + + + LE+LR +P +A + L S +G+G K+ CV L L
Sbjct: 159 ARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEAMETLTSFKGVGAKTASCVLLFCLGR 218
Query: 515 LAFPVDTNVGRIAVRLGWVPLQPLP--ESLQLHLLELYP 551
FPVDT+V RI LGW+P P ES HL + P
Sbjct: 219 NFFPVDTHVFRITKALGWLPPGPTATRESAFKHLNQAVP 257
>gi|374385131|ref|ZP_09642640.1| endonuclease III [Odoribacter laneus YIT 12061]
gi|373226557|gb|EHP48881.1| endonuclease III [Odoribacter laneus YIT 12061]
Length = 211
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 32/175 (18%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSI--DLEWLRDVPPDKAKD 491
EA+ A V EI E IK N A+ + +LV + G + D+E L+ +P
Sbjct: 63 EAMAKAEVGEIYELIKSISYPNNKAKHLSAMAKKLVSDFDGKVPDDMELLQTLP------ 116
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
G+G K+ + + H A PVDT+V R+A R+G V P + L++ P
Sbjct: 117 ------GVGRKTANVIEAVAFHRPAMPVDTHVFRVADRIGLVTNATTPLETEKQLVKNIP 170
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
L H+ LI G+ CT +P C +C +R CR+F
Sbjct: 171 -----------------SEILSTAHHWLILHGRYTCTARRPKCESCGIRDYCRYF 208
>gi|426195516|gb|EKV45446.1| hypothetical protein AGABI2DRAFT_44066, partial [Agaricus bisporus
var. bisporus H97]
Length = 234
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP------- 485
++EA+ A +++ +AI+ G+ N A ++ L + +HGS L+ L P
Sbjct: 81 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 140
Query: 486 ---PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
D+ D LLS G+G K+ CV L + +FPVDT+V R++ LGW+P + +
Sbjct: 141 ALRDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTA 200
Query: 543 QLHL 546
Q HL
Sbjct: 201 QAHL 204
>gi|406911545|gb|EKD51317.1| Helix-hairpin-helix motif:HhH-GPD [uncultured bacterium]
Length = 212
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L +E L + ++E IK G N+ +R+K FL + RE G D + ++
Sbjct: 58 LSFERLLATPAQSVAELIKPAGYFNIKTKRLKSFLGAIKREQGDFDTL--SSLSTSSLRE 115
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+LLSI G+G ++ + + L F VD R+ R V E+ L
Sbjct: 116 FLLSISGIGPETADSMMLYAFERPVFVVDAYTNRMLTRHSLVD----EEADYFRL----- 166
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
Q+Y L K D E H ++ GK FC KS P C CP+R E
Sbjct: 167 -----QEYFEDHLEK-DVALFNEYHALIVKLGKEFCRKSNPKCEECPLREE 211
>gi|18312246|ref|NP_558913.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
gi|7141250|gb|AAF37269.1|AF222334_1 putative DNA glycosylase [Pyrobaculum aerophilum]
gi|18159688|gb|AAL63095.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
Length = 223
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++ + E IK GM A +K + + E L ++ P++A++ LLS+ G+G
Sbjct: 73 IEALEELIKPAGMYRQRARNLKALAEAFI--QLGLTPERLVEMGPERARELLLSLPGVGK 130
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ + V L+ L AFPVDT++ RIA R G + E Y + I ++
Sbjct: 131 KTADVV-LVNLGLPAFPVDTHITRIAKRWG--------------IGEKY---DEISRWFM 172
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
RL + + H +LI FG+ C P C CP+ +C F SA
Sbjct: 173 ERL---PRDKYLDFHLKLIQFGRDVCRARNPKCGQCPIGAKCPSFKSA 217
>gi|448590303|ref|ZP_21650179.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
gi|445734936|gb|ELZ86491.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
Length = 267
Score = 67.0 bits (162), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + + EAI+ G+ N ++ + ++ + GS D + ++R+ P+ ++
Sbjct: 89 ESLAAADREALVEAIRSAGLYNQKSKLIIGVAEAVLADFGSEADFDTYIREADPETVRER 148
Query: 493 LLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RI+ R+G P E ++
Sbjct: 149 LLEMKGVGPKTADCVLLFAGGRDGVFPVDTHVHRISRRIGLAPADADHEGVR-------- 200
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
E +++ + C H +I FG+ +CT KP C ACPM C
Sbjct: 201 --ERLERDVPGEACGFG-------HTAMIQFGREYCTARKPACLDGPEACPMADVC 247
>gi|114566352|ref|YP_753506.1| HhH-GPD [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337287|gb|ABI68135.1| DNA-3-methyladenine glycosylase III [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 222
Score = 67.0 bits (162), Expect = 4e-08, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 26/200 (13%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
A+ W+++ K + + K+ R LD+ ALR +E+++ IK + A R+K
Sbjct: 40 AVSWKNVEKAIA--ALKEARL------LDFPALRSIAEEELADFIKPALYHRQKARRLKI 91
Query: 465 FLNRLVREHG-SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
L+ + +G IDL + +P +A+ LL++ G+G ++ + + L ++ F VD
Sbjct: 92 LLDFIAENYGGDIDLMFSEPLPQIRAR--LLALWGIGPETADSILLYAGNYPVFVVDAYT 149
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583
RI RLGWV + E +Q + PV D + E H L+ G
Sbjct: 150 IRIFTRLGWVEDKCSYEKMQGLMQNHLPV---------------DTQIYNEYHALLVALG 194
Query: 584 KVFCTKSKPNCNACPMRGEC 603
+C K K C CP+ C
Sbjct: 195 ANYCKKKKALCQECPLAEYC 214
>gi|327310305|ref|YP_004337202.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
gi|326946784|gb|AEA11890.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
Length = 213
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+AL + ++E I+ GM+ + A ++ + L R +DL + D+ ++A+ +L
Sbjct: 62 QALLSLGEERLAELIRPAGMHRVRARKLIE----LSRSLSDVDLSRIADMDVEEARRFLT 117
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ + V L L AFPVDT++ RIA R W + E + + L P
Sbjct: 118 SLPGVGEKTADVV-LANLGKPAFPVDTHITRIARR--WGIGKRYGEISRWFMERLPP--- 171
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++YL E+H +LI FG+ +C P C CP+R C
Sbjct: 172 --ERYL-------------EVHLKLIQFGRDYCRARSPRCGECPVRDLC 205
>gi|448298656|ref|ZP_21488684.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
gi|445591326|gb|ELY45532.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
Length = 298
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYL 493
+L A E++E I G+ N +E + D ++ E GS ++++D P + + L
Sbjct: 118 SLENAEQSELAETISGAGLYNQKSETLIDTAEWVLEEFGSATAFDDYVKDEDPSEVRATL 177
Query: 494 LSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LS+RG+G K+ +CV L FPVDT+V RI RLG P E+++ L P
Sbjct: 178 LSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLERDIPA 237
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H I FG+ +CT KP C +ACPM C
Sbjct: 238 AK----------CGF-------AHTATIQFGREYCTARKPACLEDPDACPMGDLC 275
>gi|332295602|ref|YP_004437525.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
gi|332178705|gb|AEE14394.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
Length = 219
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLE-WLRDVPPDKAKDYLLSIRGLGLK 502
+I ++IK G+NN + + + ++ ++E + + + + + LSI G+GLK
Sbjct: 71 KIKDSIKIAGLNNQKTKTLHSLGKKFLQNKNYSNIEDYFKKMKISEIVEVFLSIDGIGLK 130
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+V C L LH AFPVDT++ RI R+ + +++ SI
Sbjct: 131 TVSCAILFGLHKPAFPVDTHISRIVQRVKKKKISKKDIQIEIE--------GSIH----- 177
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
D L LH LI G+ C K NC CP++ C + S
Sbjct: 178 -----DWEKLKALHLYLIELGRNICRAKKQNCQMCPIKELCEDYRS 218
>gi|390959927|ref|YP_006423684.1| putative endoIII-related endonuclease [Terriglobus roseus DSM
18391]
gi|390414845|gb|AFL90349.1| putative endoIII-related endonuclease [Terriglobus roseus DSM
18391]
Length = 258
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D + +E LR A++ EI + ++ + A ++K L R+ G++ L +L DK
Sbjct: 89 DEVRWERLRDASIPEIEDTLRLATFPDRKAVQLKQTLERITERAGTLSLAFLGKYRTDKV 148
Query: 490 KDYLLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
+ ++ + G G+K S V +L A +D + RIA+RLG VP ++ L+
Sbjct: 149 RAWIEELPGAGVKASAAVVNFSSLRRRAIAIDGHHQRIAIRLGVVPANATARQVEAALVP 208
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L P W + T+ E H + G+ CT + +CN CP+R C
Sbjct: 209 LAPA-------DWTAV------TMDEHHTLVKKLGQRVCTLREAHCNRCPLREVC 250
>gi|436837874|ref|YP_007323090.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
gi|384069287|emb|CCH02497.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
Length = 236
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+EA+R A + ++ +AI+ + A +++ L L+ E G+ ++++LR++ ++A +L
Sbjct: 61 WEAVRDAPLPDLIDAIQTANYPEIKAPYIQNVLRVLIAERGTANIDFLRELSTEEAMQWL 120
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
++ G+G K+ + L PVDT+V R+ R+G + P + + H L L
Sbjct: 121 TNLPGIGPKTATLLLLFAFQKPVLPVDTHVHRVTQRIG--AIGPKVSAAKAHDLLL---- 174
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
YL D L+ H G+ CT P C AC + +C + S
Sbjct: 175 ----SYL-----PADAPVLFNFHKHFYWHGQRVCTWYNPRCEACVLAPDCDYLQSGKTML 225
Query: 614 RLALPGPEEK 623
+ P + K
Sbjct: 226 LTSTPSKKPK 235
>gi|448306248|ref|ZP_21496157.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
gi|445598662|gb|ELY52717.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
Length = 270
Score = 66.6 bits (161), Expect = 7e-08, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 430 DSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPP 486
D +D E+L A+ ++E I G+ N +E + D ++ E GS +++D P
Sbjct: 86 DDIDLAESLASADQSMLAETISGAGLYNQKSETIIDTAAWVLEEFGSAAAFDRYVKDETP 145
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
++ LLS+RG+G K+ +CV L + FPVDT+V RI R+G P E+++
Sbjct: 146 SVVRETLLSVRGVGPKTADCVLLFSGGRSGVFPVDTHVHRIYRRMGIAPPDADHEAVR-- 203
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRG 601
E++++ + C H I FG+ +CT P C +ACPM
Sbjct: 204 --------ETLEQDVSAAKCGFG-------HTASIQFGREYCTARTPACLEDPDACPMGD 248
Query: 602 EC 603
C
Sbjct: 249 IC 250
>gi|407477461|ref|YP_006791338.1| endonuclease III [Exiguobacterium antarcticum B7]
gi|407061540|gb|AFS70730.1| Endonuclease III [Exiguobacterium antarcticum B7]
Length = 222
Score = 66.6 bits (161), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A V++I E IK G+ A+ +K RLV H +VP D+A L
Sbjct: 63 ERLAAAPVEQIEEKIKRLGLYRNKAKNIKALAERLVTLHDG-------EVPTDRAG--LE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V + AF VDT+V R++ RLG + +++ L+ +
Sbjct: 114 ALPGVGRKTANVVLSVAFDVPAFAVDTHVERVSKRLGICRWKDNVTQVEVTLMRRF---- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ W +L H+Q I FG+ C +PNC CP+ CR
Sbjct: 170 --KRERWSKL-----------HHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|358400221|gb|EHK49552.1| hypothetical protein TRIATDRAFT_26345, partial [Trichoderma
atroviride IMI 206040]
Length = 268
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 417 RNSGKQERSRDRM--DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
+NS + + S D+ S +++A+ ++ + IK G++ + ++ + + L + ++G
Sbjct: 84 KNSTRAKLSMDKTYGRSDNWDAIVQGGTDKLQQTIKSGGLSVVKSKVIMNILRQTKDQYG 143
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
+ L L + D+A LLS +G+G K+ CV L L +F VDT+V RI+ LGW P
Sbjct: 144 TYSLNHLLNASNDEAMRELLSFQGVGPKTASCVLLFCLQRDSFAVDTHVYRISGLLGWRP 203
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKP 592
+ E Q HL P Y LH ++T G+ C
Sbjct: 204 GEANREEAQAHLEATVP-----------------DEDKYGLHVLMVTHGRTCDECKAGGK 246
Query: 593 NCNACPMR 600
C +R
Sbjct: 247 IAGKCALR 254
>gi|15805952|ref|NP_294652.1| endonuclease III [Deinococcus radiodurans R1]
gi|6458651|gb|AAF10505.1|AE001945_9 endonuclease III, putative [Deinococcus radiodurans R1]
Length = 338
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP-----DKAKDYLLSIRGLGLKSVECV 507
G++ M A+ + L L HG + L +LR+ P ++A+ L ++ G+G K+V V
Sbjct: 177 GLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALV 236
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L L A PVD N+ R A RL VP ++ E+ P
Sbjct: 237 LLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPA--------------- 281
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D T + LH + G+ C P C CP+R C
Sbjct: 282 DWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFC 317
>gi|385802541|ref|YP_005838941.1| DNA-(apurinic or apyrimidinic site) lyase [Haloquadratum walsbyi
C23]
gi|339728033|emb|CCC39154.1| endonuclease III [Haloquadratum walsbyi C23]
Length = 223
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLEWLRDVPPDKAKD 491
DY A+ A +E+++ I+ G+ N A R++ L + +E G L +L + + A+
Sbjct: 58 DYRAMETAPHEELADVIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V F VDT+V R+A R G + + L EL P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
Y LH +IT G+ +CT PNC
Sbjct: 178 -----------------DDLKYSLHVLMITHGREYCTAQSPNC 203
>gi|171184578|ref|YP_001793497.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
gi|170933790|gb|ACB39051.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
Length = 222
Score = 66.2 bits (160), Expect = 9e-08, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 417 RNSGKQERSRDR-MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
+N+ K S R + S+ EA+ +E++ IK GM + A +K ++ HG
Sbjct: 46 KNAFKAFNSLKRALGSITPEAVAKLAEEELAALIKPAGMYRIRARALKALAEAFLK-HG- 103
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
I + L ++ ++A+ +L+S+ G+G K+ + V L+ + AFPVDT++ RIA R G
Sbjct: 104 ITPQRLLEMGAERARAFLMSLPGVGKKTADVV-LVNIGLPAFPVDTHITRIARRWG---- 158
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + I ++ RL R L E H +LI FG+ C P C
Sbjct: 159 -------------IGRSYDEISRWFMDRLPP--ARYL-EFHLKLIQFGRDVCRARSPRCG 202
Query: 596 ACPMRGECRHFASA 609
CP+ C F SA
Sbjct: 203 VCPIGERCPSFKSA 216
>gi|345870606|ref|ZP_08822557.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
gi|343921419|gb|EGV32135.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
Length = 247
Score = 66.2 bits (160), Expect = 9e-08, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
W ++ + + R + + + S + + SLD EAL ++A++ G N+ A+R++DF +
Sbjct: 65 WTNVERALGRLAERIDLSAESILSLDVEAL--------ADALRPAGYFNLKAQRLRDFCS 116
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
V G L+ L + D+ +D LL+++G+G ++ + + L F VD R+
Sbjct: 117 FYVASGG---LDALSRIETDRLRDQLLAVKGIGPETADDMLLYAFDRPVFVVDAYTRRLF 173
Query: 528 VRLGWVPLQPLPESLQLHLLELYP-VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
RLG QL E Y + + + L P D L E H L+ K
Sbjct: 174 SRLG-----------QLSGDEGYEGIRAAFEAVLGP-----DVAMLKEYHALLVRHAKEA 217
Query: 587 CTKSKPNCNACPMRGECRHFASAF 610
C P C+ C +R +C AF
Sbjct: 218 CRSRHPRCSTCSLRSDCPAGLDAF 241
>gi|94986389|ref|YP_605753.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94556670|gb|ABF46584.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
Length = 242
Score = 65.9 bits (159), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++A+ A + ++ AI+ A R++ L + E GS DL++L ++P A +
Sbjct: 72 DWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATLRAIRDERGSYDLDFLAELPVKDALKW 131
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G+K+ V L FPVDT+V R+ R+G +
Sbjct: 132 LTALPGVGIKTASLVLLFNYARPVFPVDTHVHRVTTRVGVIGRMG--------------- 176
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E +L D L+ELH L+ G+ CT +P C C +R C
Sbjct: 177 -EQAAHRALLQLLPPDPPFLFELHLNLLRHGQKVCTWVRPKCPVCVLRARC 226
>gi|217076701|ref|YP_002334417.1| nth endonuclease III [Thermosipho africanus TCF52B]
gi|217036554|gb|ACJ75076.1| nth endonuclease III [Thermosipho africanus TCF52B]
Length = 203
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSI 496
L A ++I E IK G+ A+R+ + +V ++ I PD ++ LL +
Sbjct: 58 LSKAKEEDIYELIKPAGLYRQKAKRIIEISKIIVEKYSGI--------VPDSLEE-LLKL 108
Query: 497 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ V ++ A VDT+V RI+ RLGWV + PE + L+E+ P
Sbjct: 109 PGVGRKTANIVLYVSFSKSALAVDTHVHRISNRLGWVNTKT-PEETEFKLMEILP----- 162
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW ++ ++ FGK C PNC CP+ C+
Sbjct: 163 -KNLWG-----------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|333987518|ref|YP_004520125.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
gi|333825662|gb|AEG18324.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
Length = 212
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A ++ I IK+ G ++ A+R+K+ +++++ E DV PD K+ LLS+ G+
Sbjct: 67 APIENIEILIKKSGFYHVKAKRVKE-VSKIIHEEYD-------DVVPDDMKE-LLSLPGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + H A PVD +V RI+ R+G V + PE ++ L++ P +KY
Sbjct: 118 GRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVDTKT-PEQTEVELMKTVP-----RKY 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L+ L+ FG+ C P CP+ C ++
Sbjct: 172 WLP------------LNDLLVQFGQTICRPIGPKHEICPIADLCDYY 206
>gi|367471322|ref|ZP_09470967.1| Endonuclease III [Patulibacter sp. I11]
gi|365813601|gb|EHN08854.1| Endonuclease III [Patulibacter sp. I11]
Length = 248
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 38/189 (20%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS---------------ID 477
D+E + A V+EI AI+ G++ + + R+ L+ + G +D
Sbjct: 75 DWELVARAPVEEIEAAIRPGGISKVKSVRIAAILDAIAERSGPTARALGLDPAPDASPLD 134
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG-WVPLQ 536
L W+ P +D+L + G+G K+ CV L PVDT+V R+ RL + P
Sbjct: 135 LTWMEAAPVAAGRDFLCELPGVGRKTAACVLLFAYGLHDVPVDTHVQRVGTRLALFRPGA 194
Query: 537 PLPESLQLHLLELYPVLESIQKYLW--PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
PL E LH + LW P L ELH L+ G+ C +P C
Sbjct: 195 PLDE---LH-----------DEMLWITPEGAGL------ELHVNLLRHGRRTCHARRPAC 234
Query: 595 NACPMRGEC 603
+ C +R C
Sbjct: 235 SECALRRMC 243
>gi|110667125|ref|YP_656936.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Haloquadratum walsbyi DSM 16790]
gi|109624872|emb|CAJ51281.1| endonuclease III [Haloquadratum walsbyi DSM 16790]
Length = 223
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLEWLRDVPPDKAKD 491
DY A+ A +E+++ I+ G+ N A R++ L + +E G L +L + + A+
Sbjct: 58 DYRAMETAPHEELADIIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V F VDT+V R+A R G + + L EL P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
Y LH +IT G+ +CT PNC
Sbjct: 178 -----------------DDLKYSLHVLMITHGREYCTAQSPNC 203
>gi|419759441|ref|ZP_14285740.1| endonuclease III [Thermosipho africanus H17ap60334]
gi|407515451|gb|EKF50196.1| endonuclease III [Thermosipho africanus H17ap60334]
Length = 203
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSI 496
L A ++I E IK G+ A+R+ + +V ++ I PD ++ LL +
Sbjct: 58 LSKAKEEDIYELIKPAGLYRQKAKRIIEISKIIVEKYSGIV--------PDSLEE-LLKL 108
Query: 497 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ V ++ A VDT+V RI+ RLGWV + PE + L+E+ P
Sbjct: 109 PGVGRKTANIVLYVSFSKPALAVDTHVHRISNRLGWVNTK-TPEETEFKLMEILP----- 162
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW ++ ++ FGK C PNC CP+ C+
Sbjct: 163 -KNLWG-----------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|85375167|ref|YP_459229.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
gi|84788250|gb|ABC64432.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+EA+ A V+E+ ++ + ++ A+R+KD LN ++ E G++DL L ++ + A ++L
Sbjct: 58 WEAVAAAPVEELEVRLQRQTFPSVAAQRLKDCLNAIIAERGAVDLRHLSNLAIEDAMEWL 117
Query: 494 LSIRGLGLKSVECVRLLTL-HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
+ G+ K+ V +L A VD + RI R+G VP P ++ + Y
Sbjct: 118 ERLPGVARKNSAGVMNASLFERKAMVVDGHHRRIMQRMGMVP--PKADTAR-----TYDA 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
L I W + E H L G+ C P+C CP+R +CR A A+
Sbjct: 171 LMPIVPEEW------SAADMDEHHLLLKKLGQTHCRPRAPHCEGCPVRADCRTGTGARAA 224
>gi|167043370|gb|ABZ08073.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_ANIW141O9]
Length = 217
Score = 65.5 bits (158), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNR-LVREHGSIDLEWLRDVPPDKAKDYL 493
+ L A K++ + IK G ++ + R+ + N L + HG VP D D L
Sbjct: 67 QKLANAKAKDVEKIIKSVGFYHVKSRRIIEVANIILTKYHGK--------VPADI--DKL 116
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ I G+G K+ CV + A PVDT+V RI+ RLG V + PE ++ L + P
Sbjct: 117 VEIPGVGRKTANCVLVYAFEKPAIPVDTHVHRISNRLGLVDTKT-PEETEMELRKKVP-- 173
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
+KY P ++ + +G+ C P C+ C +R C +F + AS
Sbjct: 174 ---KKYWLP------------INNTFVMYGQNICKPISPMCSVCKIRNSCNYFKTKNAS 217
>gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1]
gi|116062229|dbj|BAA79061.2| endonuclease III [Aeropyrum pernix K1]
Length = 229
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A+ ++ EAI+E G+ A +K +VR G +L PP++ ++ L+
Sbjct: 76 EAILEASYDDLVEAIREAGLPRQKASALKALAEAVVRWGGE---NYLLKAPPEELREKLM 132
Query: 495 SIRGLGLKSVEC-VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
SIRG+G K+ + + L+ F VDT+ R+A R G V + + +
Sbjct: 133 SIRGIGPKTADVFLSLVRKAPGVFAVDTHAARVARRWGLVGEKAGYDEIS---------- 182
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++ Y P + E H +I G+ +C +P C CP+R C
Sbjct: 183 KALYNYFGPGNSE-------EAHRLIIALGRTYCKARRPRCRECPLRSVC 225
>gi|365174645|ref|ZP_09362085.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
gi|363614442|gb|EHL65936.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
Length = 231
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A+++E+ E ++ GM++ R++ L + + G L+ LR + ++YL
Sbjct: 65 WEEVAHADLEELKEVLRIAGMSSTKPPRIQQILAAVKEKFGGYTLKELRGWKQPEVREYL 124
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
S+ G+G K+ V L FPVDT++ R++ R GW + P+ +Q L P
Sbjct: 125 TSLPGVGPKTSAIVECFDLGMPGFPVDTHITRLSKRFGWADEKSPPDKIQARLEAALP-- 182
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
H + G+ C+ KP+C C + C
Sbjct: 183 ---------------PERFRGGHLNFLDHGRSICSARKPDCARCALAKWC 217
>gi|336121084|ref|YP_004575859.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
gi|334855605|gb|AEH06081.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
Length = 217
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 25/206 (12%)
Query: 406 IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
I W+++ K + N+ K E D +D + + N +++ E IK G N+ AER+K+
Sbjct: 35 ISWKNVEKAL--NNLKNE------DLIDEKRILKINTEKLKELIKPAGFYNIKAERLKNI 86
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
+V + + D + + ++ LL+I+G+G ++ + + L L F VD R
Sbjct: 87 TKYIVDNYKTTDELAKTEKDTNILRNELLNIKGVGKETADSILLYALDRKIFVVDAYTRR 146
Query: 526 IAVRLGWVPLQPLPESLQLHLLE-LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
I R G + + ++L + + P L ++Y H ++ GK
Sbjct: 147 IFSRYGIINKDMDYDEIRLIFEDNIIPSLNIYKEY----------------HALIVELGK 190
Query: 585 VFCTKSKPNCNACPMRGECRHFASAF 610
+C K P CN CP+ CR + F
Sbjct: 191 NYCKKKNPLCNTCPLNLYCRKLFNKF 216
>gi|383788526|ref|YP_005473095.1| DNA glycosylase [Caldisericum exile AZM16c01]
gi|381364163|dbj|BAL80992.1| DNA glycosylase [Caldisericum exile AZM16c01]
Length = 241
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 33/182 (18%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L+ L +++E+S IKE G + A+R+K+FL+ + + +L L + + ++
Sbjct: 70 LEPRTLYNLDIQELSNYIKESGFYRLKAQRLKNFLDFFKKYN--FELLDLTHIEIENLRN 127
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL+I+G+G ++ + + L L F VD R AVR G
Sbjct: 128 ELLNIKGVGKETADSIILYALEKPIFVVDNYTKRFAVRFG-------------------- 167
Query: 552 VLESIQKYLWPRLCKLD-------QRTLY---ELHYQLITFGKVFCTKSKPNCNACPMRG 601
+LE++ Y RL D + TL E+H ++ GK FC K +PNC+ACP+
Sbjct: 168 ILENMSSYDEIRLLFEDALKSENEKETLIRFKEMHALIVELGKNFC-KKEPNCSACPLGN 226
Query: 602 EC 603
C
Sbjct: 227 LC 228
>gi|167628251|ref|YP_001678750.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
gi|167590991|gb|ABZ82739.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
Length = 231
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD AL A ++++ ++ N AER++ F R+V E+G LE L + + +
Sbjct: 61 LDISALAEAPREQVARLVRSTRYYNQKAERLQGFARRIVDEYGG-RLENLLSLEAGELRK 119
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE-LY 550
LL I+G+G ++ +C+ L F VD RI RLG+ + + +Q E L
Sbjct: 120 RLLDIKGIGKETADCIILYGAQQPIFVVDAYTRRIFSRLGYFSEKVGYDEMQAFFAERLE 179
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L Q+Y H Q+ G +C P+C CP+ C ++
Sbjct: 180 PDLYLFQEY----------------HAQIDGLGNRYCLAKGPSCAECPLGDCCTYY 219
>gi|257389114|ref|YP_003178887.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
gi|257171421|gb|ACV49180.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
Length = 270
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 26/188 (13%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG---SIDLEWLRDVPPDKAKDYLLSI 496
A+ + ++E I+ G++N +E + R+ E+G D ++R P + LL +
Sbjct: 97 ADQQRLAETIQPAGLHNQKSETIVRLAGRVCEEYGFGAEFD-AFVRGGDPGDVRSALLDM 155
Query: 497 RGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+G+G K+ +CV L FPVDT+V RIA R+G P E ++ L + P +
Sbjct: 156 KGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALEDDIPAEK- 214
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASAFA 611
C H +I FG+ +C+ KP C ACP+ +C + A
Sbjct: 215 ---------CGFG-------HTAMIQFGREYCSARKPACLDDPEACPLADQCEQLGVSPA 258
Query: 612 SARLALPG 619
+ + P
Sbjct: 259 TGEVFDPA 266
>gi|392588793|gb|EIW78124.1| DNA glycosylase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 276
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 99/257 (38%), Gaps = 53/257 (20%)
Query: 372 SVEQVLSAHKVYDETNPNISKSKKRK---------ADGEKKNAIDWESLRKEVQRNSGKQ 422
S E V + + + T PN + K RK G N +D SL + +
Sbjct: 30 STEDVNAIYDLLASTFPNGAAPKHRKPLDSANSGATCGATPNVLD--SLIGTILSQNTSN 87
Query: 423 ERSRDRMDSLD---------YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH 473
S +SLD + + A ++ EAIK G+ N A +++ L + H
Sbjct: 88 ANSSSAKNSLDAAFGRGEKAFAKMATAPAADVVEAIKHGGLANRKARIIQNLLVSVKEAH 147
Query: 474 --GSIDLEWL--RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
G DL+ L DV ++ L+ G+G K+ CV + AF VDT+V RI
Sbjct: 148 PEGRYDLQHLLAGDVSDEEVMRSLVQYNGVGPKTAACVLAFCMGRDAFAVDTHVFRITRM 207
Query: 530 LGWVPLQPLPESLQLHL-LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCT 588
LGWVP S Q HL L + P L+ Y LH + G+
Sbjct: 208 LGWVPRHADRVSTQAHLELRVPPELK------------------YGLHVMFVKHGRA--- 246
Query: 589 KSKPNCNACP--MRGEC 603
C C RGEC
Sbjct: 247 -----CKGCKNGSRGEC 258
>gi|448302984|ref|ZP_21492934.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445593991|gb|ELY48158.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 270
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 430 DSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPP 486
D +D E+L A ++E I G+ N +E + D ++ E GS +++D P
Sbjct: 86 DDIDLAESLASAEQSILAETISGAGLYNQKSETIIDTAAWVLEEFGSAAAFDTFVKDEAP 145
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
+D LLS+RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 146 STVRDTLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVRAV 205
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRG 601
L P + C H I FG+ +CT P C +ACPM
Sbjct: 206 LERDVPAAK----------CGFG-------HTASIQFGREYCTARTPACLEDPDACPMGD 248
Query: 602 ECRH 605
C
Sbjct: 249 ICEQ 252
>gi|392410783|ref|YP_006447390.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
gi|390623919|gb|AFM25126.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
Length = 225
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 19/183 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSI 476
N K + +LD A+ ++ ++++ I+ G N+ A R+++F+N LV H GS+
Sbjct: 49 NVAKAIANLKEASALDPLAIYHSSHEQLAAWIRPAGYYNIKAVRLRNFINYLVERHSGSL 108
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
D + DV + LLSI+G+G ++ + + L H F +D GR+ R G VP
Sbjct: 109 DSLFSDDVQVLRTN--LLSIKGIGKETADSMILYAAHKPIFVIDAYTGRVMKRHGIVPYS 166
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
+ +Q E PV D + H Q + G +C K P C+
Sbjct: 167 ANYDVMQELFHENLPV---------------DVELYNDFHAQFVALGHHYCKKV-PLCHF 210
Query: 597 CPM 599
CP+
Sbjct: 211 CPL 213
>gi|162447100|ref|YP_001620232.1| endonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985207|gb|ABX80856.1| endonuclease III [Acholeplasma laidlawii PG-8A]
Length = 214
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+V ++ + IK G+ ++ + RLV ++ + P + KD L S+ G+
Sbjct: 67 ADVDDVMDTIKTIGLYKTKSKNIIGLAKRLVEDYDGL--------VPSERKD-LESLPGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V A VDT++ RI+ RLG +++ L + +P K
Sbjct: 118 GRKTANVVLSNAFGIPALAVDTHILRISKRLGLADETDDVLEVEMKLNKQFP------KE 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
LW ++LH+QLI FG+ C KPNC+ C M+ C HF + +
Sbjct: 172 LW-----------HKLHHQLIFFGRYHCIARKPNCDTCKMQDMCPHFKNVIS 212
>gi|222099288|ref|YP_002533856.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
gi|221571678|gb|ACM22490.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
Length = 396
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 413 KEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
K V+R E + + D L E L + + I+ I+ G N+ A+R+K L +RE
Sbjct: 218 KNVERAMRNIEEALGKDDIL--EKLSSLSTERIAHLIRPAGFFNIKAKRLKALLE-FLRE 274
Query: 473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
+ + +L+ L+ +P ++ LL I+G+G ++ + + L L F VD+ R+ R+
Sbjct: 275 Y-NFNLKLLKRMPLGALRELLLKIKGIGKETADAILLYALEKPIFVVDSYTKRLLARIFN 333
Query: 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
+ L+ E +Q + YP D R ELH ++ K FC+K+ P
Sbjct: 334 IELKDYDE-IQKLFMSCYPH---------------DVRLYQELHGLIVEHAKRFCSKN-P 376
Query: 593 NCNACPMRGEC 603
C CP++ +C
Sbjct: 377 KCRECPLKKKC 387
>gi|385805176|ref|YP_005841574.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
gi|383795039|gb|AFH42122.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
Length = 225
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD+ L ++ E+ E I+ G+ AE +K L ++ + L+ L PP++A+
Sbjct: 70 LDFRKLNSMSLGELEEIIRISGLYKSKAETIKRLAGFLSKDE--LFLKNLCKKPPEEARR 127
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L SI+G+G K+ + + + FPVD ++ R+ RL L+
Sbjct: 128 ELTSIKGIGKKTADLFLSVYCNMPLFPVDRHIKRVTERL----------------LDKKM 171
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
E + ++ W + LD+ L E HY+LI G+ FC C+ CP+ CR
Sbjct: 172 DYEEVSQF-WREV--LDRNLLKEAHYKLIYVGRKFCRPKGEKCDLCPLADICR 221
>gi|448702713|ref|ZP_21700146.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
gi|445777274|gb|EMA28244.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
Length = 268
Score = 64.7 bits (156), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 427 DRMDSLDY---EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWL 481
+R D+ D E+L A ++E I G+ N +E + + ++ E GS ++
Sbjct: 81 ERYDAPDVDLAESLAGAEQSALAETISSAGLYNQKSEIIIETAEWVLEEFGSAAAFDAFV 140
Query: 482 RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPE 540
+D P ++ LL +RG+G K+ +CV L FPVDT+V RI RLG P E
Sbjct: 141 KDENPGTVRETLLEVRGVGPKTADCVLLFAGGRTGVFPVDTHVHRIYRRLGIAPADADHE 200
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NA 596
++ L + P + C H I FG+ +CT KP C +A
Sbjct: 201 EVRAVLEDEVPAAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDA 243
Query: 597 CPMRGEC 603
CPM C
Sbjct: 244 CPMGDLC 250
>gi|76802666|ref|YP_330761.1| repair DNA N-glycosylase / DNA-(apurinic or apyrimidinic site)
lyase [Natronomonas pharaonis DSM 2160]
gi|76558531|emb|CAI50123.1| endonuclease III [Natronomonas pharaonis DSM 2160]
Length = 268
Score = 64.7 bits (156), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDYLLSIRGLGLK 502
++E I G+ N + R+ +V +G D ++ + PPD+ ++ LL + G+G K
Sbjct: 98 LAETISGAGLYNQKSTRLIALAEFVVETYGGADGFDGFVTEAPPDEVRETLLELNGVGPK 157
Query: 503 SVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
+ +CV L + FPVDT+V RIA R+G P E+++ L P
Sbjct: 158 TADCVLLFSGGRDGVFPVDTHVHRIARRMGLAPADADHEAVRSALEADVP---------- 207
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H +I FG+ +CT KP C ACP+ C
Sbjct: 208 GEKCGFG-------HTAMIQFGREYCTARKPACLDDPEACPLADRC 246
>gi|448400249|ref|ZP_21571316.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
gi|445667789|gb|ELZ20429.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
Length = 270
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Query: 430 DSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPP 486
D LD E+L A ++E I G+ N +E + D ++ E GS +++D P
Sbjct: 86 DDLDLAESLAHAEQSTLAETISSAGLYNQKSETIIDTAEWVLEEFGSAAAFDTFVKDEAP 145
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
++ LL +RG+G K+ +CV L FPVDT+V RI RLG P E+++
Sbjct: 146 AAVRETLLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHETVR-- 203
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRG 601
E +++ + C H I FG+ +CT KP C ACPM
Sbjct: 204 --------EILERDVPAAKCGFG-------HTATIQFGREYCTARKPACLDDPEACPMAD 248
Query: 602 EC 603
C
Sbjct: 249 LC 250
>gi|448313759|ref|ZP_21503471.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
gi|445597069|gb|ELY51147.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
Length = 286
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYL 493
AL A ++E I G+ N +E + ++ E GS E+++D P+ ++ L
Sbjct: 93 ALAEAERSALAETISSAGLYNQKSEVIIATAEWVIEEFGSAVAFDEYVKDEAPETVRETL 152
Query: 494 LSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L +RG+G K+ +CV L FPVDT+V RI RLG P E ++ L P
Sbjct: 153 LDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEDVRAVLEREVPA 212
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
+ C H I FG+ +CT KP C ACPM C
Sbjct: 213 AK----------CGFG-------HTATIQFGREYCTARKPACLEDPEACPMADRCEQ 252
>gi|402075883|gb|EJT71306.1| hypothetical protein GGTG_10565 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 393
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
LE +RD+P A LLS RG+G K+ CV L L +F VDT+V RIA LGW P +
Sbjct: 278 LEHIRDLPTADAMRELLSFRGVGPKTASCVLLFCLGRDSFAVDTHVHRIAGLLGWRPPRA 337
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
+ LHL P + Y LH ++T GK C + K A
Sbjct: 338 TRDETHLHLDARVPDTDK-----------------YGLHVLMVTHGK-RCAECKAGGRAA 379
Query: 598 PMRGEC 603
G C
Sbjct: 380 ---GRC 382
>gi|448605866|ref|ZP_21658459.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
gi|445741189|gb|ELZ92693.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
Length = 268
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I +AI+ G+ N + ++ ++ + GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSNLIQGVAEEVLADFGSEADFDRYVREEDPATVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
D++ + H +I FG+ FC P C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARTPACLDGPGACPMADVC 248
>gi|448337176|ref|ZP_21526258.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
gi|445626522|gb|ELY79865.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
Length = 284
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A ++E I G+ N +E + D ++ E GS +++D P ++
Sbjct: 100 ESLASAERATLAETISGAGLYNQKSETLIDTAEWVLEEFGSASAFDTFVKDEEPSVVRET 159
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LLS+RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 160 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 211
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
E +++ + C H I FG+ +C KP C +ACPM C
Sbjct: 212 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 262
Query: 608 SAFASARLALPG 619
A+ + P
Sbjct: 263 VFPATGEVVDPA 274
>gi|172057780|ref|YP_001814240.1| endonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990301|gb|ACB61223.1| endonuclease III [Exiguobacterium sibiricum 255-15]
Length = 222
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+ L A V+EI E IK G+ A+ +K +L+ HG +VP D+A L
Sbjct: 63 DRLAAAPVEEIEEKIKRLGLYRNKAKNIKALAEQLLVLHGG-------EVPTDRAG--LE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V + AF VDT+V R++ RLG + ++ L++ +
Sbjct: 114 ALPGVGRKTANVVLSVAFDVPAFAVDTHVERVSKRLGICRWKDNVMQVEQTLMKRF---- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ W +L H+Q I FG+ C +PNC CP+ CR
Sbjct: 170 --KRERWSKL-----------HHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|448574894|ref|ZP_21641417.1| endonuclease III [Haloferax larsenii JCM 13917]
gi|445732573|gb|ELZ84155.1| endonuclease III [Haloferax larsenii JCM 13917]
Length = 267
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 447 EAIKERGMNNMLAERMKDFLNRLVREHGS-IDL-EWLRDVPPDKAKDYLLSIRGLGLKSV 504
EAI+ G+ N ++ + ++ + GS D +W+R+ P+ ++ LL ++G+G K+
Sbjct: 101 EAIRSAGLYNQKSKLIIGVAEAVLSDFGSEADFDQWVREGDPETVRERLLEMKGVGPKTA 160
Query: 505 ECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+CV L FPVDT+V RI+ R+G P E ++ E +++ +
Sbjct: 161 DCVLLFAGGRDGVFPVDTHVHRISRRIGLAPADADHEGVR----------ERLERDVPGE 210
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H +I FG+ +CT KP C ACPM C
Sbjct: 211 ACGFG-------HTAMIQFGREYCTARKPACLDGPEACPMDDVC 247
>gi|269837103|ref|YP_003319331.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
gi|269786366|gb|ACZ38509.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
Length = 247
Score = 63.9 bits (154), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ + A V+E+++AI+ G+ A R++ L + L L +P +AK L
Sbjct: 77 WDEVVAAPVEEVADAIRSGGLARQKAPRIQAALAAALNSGEDPPLASLFTLPLPEAKRRL 136
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
S+ G+G K+ CV L A PVDT+V R++ R+G + Q + E+ LE P+L
Sbjct: 137 TSLPGIGPKTAACVLLFACGRPALPVDTHVYRVSRRVGLID-QGVSEAAAHDRLE--PLL 193
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
+ + +Y H LI G+ C ++P C+ C + C ++ + S+
Sbjct: 194 KPDE--------------VYPFHVGLIRHGRRVCKATRPRCDECCISDLCDYYQAGCQSS 239
Query: 614 R 614
R
Sbjct: 240 R 240
>gi|433590937|ref|YP_007280433.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334470|ref|ZP_21523645.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
gi|433305717|gb|AGB31529.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|445619802|gb|ELY73319.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
Length = 272
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 430 DSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPP 486
D +D E+L A ++E I G+ N +E + D ++ E GS +++D PP
Sbjct: 86 DDIDLVESLAAAEQSTLAETISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDAFVKDEPP 145
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
+ ++ LL +RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 146 AEVRETLLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-- 203
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRG 601
E +++ + C H I FG+ +C P C +ACPM
Sbjct: 204 --------EVLERDVPAAKCGFG-------HTATIQFGREYCRARTPACLEDPDACPMAD 248
Query: 602 EC 603
C
Sbjct: 249 RC 250
>gi|386002355|ref|YP_005920654.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
gi|357210411|gb|AET65031.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
Length = 133
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
IDLE+LR ++A+ +L+S+ G+G K+ V L PVDT+V R++ RLG+VP
Sbjct: 13 IDLEFLRGADAEEARQFLVSLPGVGPKTAAVVLLFAFRMPLLPVDTHVNRLSRRLGFVPA 72
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
E + L E+ P +KY H LI G+ C P+C
Sbjct: 73 GASIEEAERILEEITPR----EKYC-------------SFHVNLIRHGRAVCRARSPSCG 115
Query: 596 ACPMRGEC 603
AC + C
Sbjct: 116 ACVLAEVC 123
>gi|406886945|gb|EKD33865.1| hypothetical protein ACD_75C02568G0003 [uncultured bacterium]
Length = 223
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
+N K ++ + YE L + +EI+ IK G N+ A R+++ LN ++ EH
Sbjct: 52 QNVTKAIKNLKEAGLMTYETLSLCSAEEIAVYIKPAGYYNLKAGRLRNLLN-MIAEHYDG 110
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
L+ A++ LL ++G+G ++ + + L + H F VD R+ R V +
Sbjct: 111 QLDCFLQEKLAVARERLLDVKGIGPETADSILLYSCGHPIFVVDMYTHRVFSRHNLVAEE 170
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
++Q ++ +L P D E H ++ FC K+ P C
Sbjct: 171 TDYHAMQALFMD----------HLSP-----DPVLFNEFHALVVRVAATFCKKTNPQCET 215
Query: 597 CPMRG 601
CP+RG
Sbjct: 216 CPLRG 220
>gi|400601349|gb|EJP68992.1| base excision DNA repair protein [Beauveria bassiana ARSEF 2860]
Length = 361
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 418 NSGKQERSRDRMDSL-----DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
+S R++ MD++ +EA+ ++ AI+ G+ + + D L + +
Sbjct: 185 SSANSTRAKQSMDTVYGGSDQWEAIAAGGQAKLQRAIQSGGLAATKSRVIIDILAAVRAK 244
Query: 473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
+G L+ L +A + LL+ G+G K+ C+ L L +F VDT+V R+ LGW
Sbjct: 245 YGVYSLDHLFTAGDAEAMEELLAFPGVGPKTASCILLFCLQRPSFAVDTHVYRLTGVLGW 304
Query: 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
P + E Q HL K+ Y LH LI G+ C+
Sbjct: 305 RPYEATREQAQAHL-----------------DAKVPDELKYPLHVLLIAHGRT-CS---- 342
Query: 593 NCNACPMRGECRHFASAF 610
CNA G+ AF
Sbjct: 343 ACNAKAAAGQTCKLREAF 360
>gi|344997006|ref|YP_004799349.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965225|gb|AEM74372.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 232
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 406 IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
I W S+ K + + R + L E + + ++++E IK G N +R+K+F
Sbjct: 53 ISWNSVEKAIC--------NLKRANILSIEGILQTSDEKLAELIKPAGYYNQKTKRLKEF 104
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
N L RE S DLE L + + LLS +G+G ++ + + L F VD+ R
Sbjct: 105 CNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKR 163
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
+ RLG L ES ++ +L + I L P+ + E H ++ K
Sbjct: 164 LFYRLG------LIESEKISYNDLQAI---IMANLTPQ-----TKFFNEFHALIVKHCKE 209
Query: 586 FCTKSKPNCNACPMRGECRHF 606
C KP CN C +R C +F
Sbjct: 210 ICKSKKPICNKCCLRLICNYF 230
>gi|302349120|ref|YP_003816758.1| endoIII-related endonuclease [Acidilobus saccharovorans 345-15]
gi|302329532|gb|ADL19727.1| predicted EndoIII-related endonuclease [Acidilobus saccharovorans
345-15]
Length = 230
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 34/174 (19%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D L+ R V++ + AI+E + + ER DFL EHG I+ +
Sbjct: 81 DGLEQVIRRAGMVRQKARAIRE--LARLALERGVDFL-----EHGDIN----------EV 123
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ LLSIRG+G K+V+ L F VDT+ RIA R G E + LL
Sbjct: 124 ERALLSIRGIGSKTVDVFLSLYRKVPRFAVDTHAKRIAARWGLTRKGASYEEVSGALLNF 183
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ S E H LI FG+ +CT P C+ CP+R C
Sbjct: 184 FGPERS-----------------DEAHRLLIAFGRAYCTARNPRCSECPLRQYC 220
>gi|291294869|ref|YP_003506267.1| endonuclease III [Meiothermus ruber DSM 1279]
gi|290469828|gb|ADD27247.1| endonuclease III [Meiothermus ruber DSM 1279]
Length = 235
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A +E+ IK G+ A + RLV +HG +VP DKAK
Sbjct: 86 DAFALAQATPEEVEPYIKTIGLYRSKARNIVLLARRLVEQHGG-------EVPVDKAK-- 136
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT++ R+A RLG + Q PE + L L+P
Sbjct: 137 LRALPGVGWKTATVVLGAAFGVPGIAVDTHLTRLAARLG-LSAQKDPEKIGGDLERLFPK 195
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +H+ LI FG+ CT KP C CP+ +C
Sbjct: 196 ----EKWVF-------------VHHALILFGRYRCTARKPQCPGCPLYDDC 229
>gi|320354681|ref|YP_004196020.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
gi|320123183|gb|ADW18729.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
Length = 214
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
+ E L ++E I+ G N+ A R+ + L+ + ++HG +L+ + P + ++
Sbjct: 60 MSLEGLSALPTGLLAEYIRPAGYYNIKAGRLHNLLSTINQQHGG-NLQAFLEQPLPQLRE 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL+I+G+G ++ + + L F VD RI VR L++
Sbjct: 119 QLLAIKGIGRETADSILLYAAGLPIFVVDAYTHRILVRH--------------QLIDEEC 164
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
E+IQ+ L D R E H L+ G V+C K P+C +CP++G
Sbjct: 165 GYEAIQELFMDNLA-CDPRLYNEYHALLVRVGNVYCKKKHPDCASCPLQG 213
>gi|302871235|ref|YP_003839871.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574094|gb|ADL41885.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
Length = 234
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
R + L E + ++++E IK G N A+R+K+F N L RE S DLE L +
Sbjct: 68 RANILSVEGILQTPDEKLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDIL 126
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ LLS +G+G ++ + + L F VD+ R+ RLG L ES ++
Sbjct: 127 SLRKILLSQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYS 180
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLY--ELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+L ++ + KL +T + E H ++ K C KP CN C +R C +
Sbjct: 181 DLQAII----------MAKLTPQTKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNY 230
Query: 606 F 606
F
Sbjct: 231 F 231
>gi|147919100|ref|YP_687169.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110622565|emb|CAJ37843.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 243
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A I++ I+ G++ A+ +K+ ++ E+ L+++ + P+ A+ LL
Sbjct: 63 EQLASAPESAIADLIRIGGLHEQKAKLIKNISQLVIDEYDGT-LDFVCETDPEVARKELL 121
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+I+G+G K+ +CV L + PVDT+V RI RLG VP + E + L+E P E
Sbjct: 122 TIKGVGPKTADCVLLFSCDRDVIPVDTHVFRITKRLGIVPEKADHEKARQILMEKVP--E 179
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
++ H LI FG+ C P + C + C +A +AR
Sbjct: 180 GLRG---------------STHVALIKFGREICKAQNPRHDQCFLLDLC-DYARQVGTAR 223
Query: 615 LALPGPE 621
GPE
Sbjct: 224 ----GPE 226
>gi|390601386|gb|EIN10780.1| DNA glycosylase [Punctularia strigosozonata HHB-11173 SS5]
Length = 359
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 100/242 (41%), Gaps = 44/242 (18%)
Query: 380 HKVYDETNPNISKSKKRKADGEKKNAID--------WESL-----RKEVQRNSGKQERSR 426
H++ P ++ +KKRKAD EK NA ESL +NS +RS
Sbjct: 83 HRLLLSQFPELA-TKKRKAD-EKNNAAGTCGGVPNVIESLIGMSRHNTSSKNSTGAKRSL 140
Query: 427 DR-MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
D ++ A+ A + + +AI+ G+ N A +++ L + HG L+ L P
Sbjct: 141 DAAFGRNNFAAIADAPRERVVDAIRHGGLANKKAGVIQNLLKEIKARHGDYSLQHLASRP 200
Query: 486 P------DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
D+ L+S G+G K+ CV L L +F VDT+V R++ LGWVP +
Sbjct: 201 SKSALSDDEIMHELVSYDGVGPKTASCVLLFCLERPSFAVDTHVFRLSKMLGWVPAKSDR 260
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
Q HL P Y LH + G+V C P C A P
Sbjct: 261 VLAQAHLDARIP-----------------GELKYGLHCGFVKHGRV-C----PACKAGPS 298
Query: 600 RG 601
G
Sbjct: 299 GG 300
>gi|406893033|gb|EKD38207.1| hypothetical protein ACD_75C00822G0003 [uncultured bacterium]
Length = 223
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
+ YE+L V EI++ IK G N+ A R+++ L+ ++ H L+ D A++
Sbjct: 67 MTYESLSQCGVDEIAQYIKPSGYYNLKARRLRNLLD-MIGNHYDGQLDRFLDDDAQAARE 125
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL ++G+G ++ + + L H F VD R+ R V + +++Q + P
Sbjct: 126 MLLGVKGIGPETADSILLYACGHPIFVVDMYTHRVFSRHNMVDEETDYQTMQAVFMNQLP 185
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
D E H ++ +C K+ P C+ CP++G
Sbjct: 186 C---------------DAELFNEFHALVVRVAVTYCKKTIPLCDRCPLQG 220
>gi|448728587|ref|ZP_21710911.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
gi|445796772|gb|EMA47269.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
Length = 272
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EW 480
+R DR+D AL + ++E I+ G+ N + M R+V E+GS +
Sbjct: 81 DRYGDRVDGDLAAALANDDQPTLAETIQSAGLYNQKSATMIAIAERVVDEYGSAAEFDAF 140
Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
+ + P+ +D LL G+G K+ +CV L + FPVDT+V RI RLG P
Sbjct: 141 VTEKDPETVRDALLDFSGVGPKTADCVLLFSGGREGVFPVDTHVHRIYRRLGIAPSDADH 200
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----N 595
E ++ + + P + C H I FG+ +C+ KP C +
Sbjct: 201 EEVRTVVEDQVPAAK----------CGFG-------HTASIQFGREYCSARKPACLDDPD 243
Query: 596 ACPMRGEC 603
ACPM C
Sbjct: 244 ACPMADLC 251
>gi|386857015|ref|YP_006261192.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|380000544|gb|AFD25734.1| Endonuclease III, putative [Deinococcus gobiensis I-0]
Length = 213
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
G+ + A+ + L L G + L +L D+ ++A+ L + G+G ++ V L L
Sbjct: 50 GLTRIKADYLYGILAALEGSRGELSLRFLHDLGDEEARAVLEGLPGVGQRTASLVLLFDL 109
Query: 513 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 572
A PVDTN+ R+A RL V PE+ + E + + ++ D T
Sbjct: 110 VRPAMPVDTNIARMAARLDLV-----PETWSTNRTEAW----------FGQVIARDWETR 154
Query: 573 YELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEK 623
Y LH + G CT +P C C +R C A+ F + P P ++
Sbjct: 155 YALHLSGVRHGHETCTPRRPLCGRCVLRDLCPS-AALFLEGEVPEPSPTKR 204
>gi|346321129|gb|EGX90729.1| HhH-GPD family base excision DNA repair protein [Cordyceps
militaris CM01]
Length = 330
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 418 NSGKQERSRD----RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH 473
NS + +RS D R D+ +EA+ ++ AI+ G+ + + + L + ++
Sbjct: 154 NSTRAKRSMDAAYGRSDA--WEAIAAGGQPQLQAAIRCGGLAATKSRVIVNLLAAVHSKY 211
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G L+ L +A + LL+ G+G K+ CV L L +F VDT+V RIA LGW
Sbjct: 212 GMYSLDHLFHASDTEAMEELLAFPGVGPKTASCVLLFCLQRPSFAVDTHVYRIAGILGWR 271
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
P + E Q HL P ++++ Y LH LI G+
Sbjct: 272 PPEATREQAQAHLDASIP--DALK---------------YPLHVLLIAHGR--------T 306
Query: 594 CNACPMR---GECRHFASAFA 611
C AC + GE AFA
Sbjct: 307 CRACGAKAAAGESCKLRKAFA 327
>gi|303246513|ref|ZP_07332792.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
gi|302492223|gb|EFL52098.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
Length = 216
Score = 63.5 bits (153), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL V+E++E I+ G + A R+++ L +V E G D+ L D D A++ LL
Sbjct: 63 EALYALPVEELAELIRPAGYFRVKAARLRNLLALIVHELGG-DITALADGGLDAARERLL 121
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+++G+G ++ + + L L +F VD RI R P E L+ ++ P
Sbjct: 122 AVKGVGPETADSILLYGLSLPSFVVDAYTARICNRHALAPEDAGYEELRELFMDALP--- 178
Query: 555 SIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCNACPM 599
+ LY E H L+ G +C P C++CP+
Sbjct: 179 -------------EDTALYNEFHALLVRVGNGWCRPRAPRCDSCPL 211
>gi|335430781|ref|ZP_08557667.1| endonuclease III [Haloplasma contractile SSD-17B]
gi|334887321|gb|EGM25653.1| endonuclease III [Haloplasma contractile SSD-17B]
Length = 210
Score = 63.5 bits (153), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRG 498
A + E+ + +K G+ A+ +K L+ E+ G + PD ++ L + G
Sbjct: 67 APIVELEQDLKRIGLYKTKAKNVKKMSQILIDEYDGKV---------PD-TREELEKLPG 116
Query: 499 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
+G K+ V + AF VDT+V R++ RLG P ++ L++++P
Sbjct: 117 VGRKTANVVLSVCFDQPAFAVDTHVARVSKRLGIANENDTPLKIEKKLIDVFP------- 169
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ LH+Q+I FG+ CT KPNC+ C ++ C F
Sbjct: 170 ----------EEKWCALHHQMIFFGRYHCTARKPNCDECKLKDICTEF 207
>gi|284165866|ref|YP_003404145.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
gi|284015521|gb|ADB61472.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
Length = 269
Score = 63.2 bits (152), Expect = 6e-07, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYL 493
+L A ++E I G+ N +E + ++ E GS +++D P ++ L
Sbjct: 92 SLADAEQSRLAETISSAGLYNQKSEVLIRTAEWVLEEFGSAAAFDAFVKDEDPAAVRETL 151
Query: 494 LSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LSIRG+G K+ +CV L FPVDT+V RI R+G P E ++ L P
Sbjct: 152 LSIRGIGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHEGVRAVLEREVPA 211
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFAS 608
+ C H I FG+ +CT KP C +ACPM C
Sbjct: 212 AK----------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMADVCEQVGV 254
Query: 609 AFASARLALPG 619
A+ + P
Sbjct: 255 YPATGEVVDPA 265
>gi|448510854|ref|ZP_21616067.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|448523661|ref|ZP_21618848.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
gi|445695608|gb|ELZ47710.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|445700734|gb|ELZ52725.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
Length = 233
Score = 63.2 bits (152), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P
Sbjct: 69 DRYD--DFAAVESADHEELKETIRVAGLTDQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D+AKD+L I+G+G K+ V VDT+V R++ R G VP E
Sbjct: 127 TDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEA 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
L E P D+ T Y LH LI G+ C+ +C+
Sbjct: 187 LDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|85375166|ref|YP_459228.1| endonuclease III [Erythrobacter litoralis HTCC2594]
gi|84788249|gb|ABC64431.1| endonuclease III [Erythrobacter litoralis HTCC2594]
Length = 224
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
M +LD EA I++AIK G+ NM ++ F L+ EH R V PD
Sbjct: 72 MLALDDEA--------IAQAIKPCGLYNMKTRNIRKFNQALLAEH--------RGVVPD- 114
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
++ LLS+ G+G K + V T VDT+V R+ R+G + ++ + L E
Sbjct: 115 TREGLLSLPGIGRKCADIVMSFTFGKDVIAVDTHVHRVCNRIGLTDAKTADKTAE-QLEE 173
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
P + W LI FGK CT P C CP+ C +A
Sbjct: 174 RAPRWAHADGHFW-----------------LIQFGKRVCTSRAPKCERCPVSDLCLWYAE 216
Query: 609 AFASA 613
A A
Sbjct: 217 QQAQA 221
>gi|335437951|ref|ZP_08560708.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
gi|334893555|gb|EGM31766.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
Length = 281
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
+AL A E++E I G+ N + R+ R+ ++G D ++R+ P + ++
Sbjct: 102 DALADAEQAELAETISGAGLYNQKSARISQIAERVREKYGGEDEFDAFVREEPAEAVRET 161
Query: 493 LLSIRGLGLKSVECVRLLTL-HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL++ G+G K+ +CV L FPVDT+V RI RLG P E+++ L E P
Sbjct: 162 LLAMTGVGPKTADCVLLFAGGRDGVFPVDTHVHRIYRRLGVAPPDADHEAVRAVLEETVP 221
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H I FG+ +C+ KP C ACP+ C
Sbjct: 222 ----------EKKCGFG-------HTATIQFGREYCSARKPACLDGPEACPLDDLC 260
>gi|448317595|ref|ZP_21507145.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
gi|445602986|gb|ELY56956.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
Length = 271
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDY 492
E+L A E++E I G+ N +E + ++ E GS +++R+ P+ +
Sbjct: 92 ESLADAERSELAETISSAGLYNQKSEMIIGAAEEILEEFGSAAGFDDFVREEEPEDVRQR 151
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL I G+G K+ +CV L FPVDT+V RI RLG P E ++ L P
Sbjct: 152 LLEIHGVGPKTADCVLLFASGRGGVFPVDTHVHRIYRRLGIAPPDADHEVVRAVLEREVP 211
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
+ C H I FG+ +CT KP C +ACPM C
Sbjct: 212 AAK----------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMADVCEQVG 254
Query: 608 SAFASARLALPGPEEKS 624
A+ + P +S
Sbjct: 255 VYPATGEVVDPAEAPES 271
>gi|222528627|ref|YP_002572509.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
gi|222455474|gb|ACM59736.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
Length = 225
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 25/202 (12%)
Query: 406 IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
I W S+ K + + R + L E + + + +SE IK G N A+R+K+F
Sbjct: 45 ISWNSVEKAIC--------NLKRANILSIEGIFQTSDEMLSELIKPAGYYNQKAKRLKEF 96
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
N L RE S DLE L + + LLS +G+G ++ + + L F VD+ R
Sbjct: 97 CNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKR 155
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGK 584
+ RLG L ES ++ +L + + L P Q LY E H ++ K
Sbjct: 156 LFYRLG------LIESEKISYNDLQAI---VMTNLTP------QTQLYNEFHALIVKHCK 200
Query: 585 VFCTKSKPNCNACPMRGECRHF 606
C KP CN C ++ C ++
Sbjct: 201 EICKSKKPICNKCCLKLICNYY 222
>gi|448480701|ref|ZP_21604703.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
gi|445822018|gb|EMA71793.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
Length = 233
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P
Sbjct: 69 DRYD--DFAAVESADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D+AKD+L I+G+G K+ V VDT+V R++ R G VP E
Sbjct: 127 TDEAKDWLTEIKGVGPKTASVVLNFHFGKPTIAVDTHVERVSKRFGLVPESASNERAHEA 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
L E P D+ T Y LH LI G+ C+ +C+
Sbjct: 187 LDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|386811544|ref|ZP_10098769.1| putative glycosylase [planctomycete KSU-1]
gi|386403814|dbj|GAB61650.1| putative glycosylase [planctomycete KSU-1]
Length = 214
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 31/196 (15%)
Query: 408 WESLRKEVQ--RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
W ++ K ++ +N+GK L EA+ NV E+S+ I+ G N+ A R+K F
Sbjct: 44 WSNVEKAIRNLKNTGK----------LTPEAIHELNVTELSQLIRPSGFFNVKARRIKTF 93
Query: 466 LNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVG 524
++ L + GS+ + +D+ +++ LL+++G+G ++ + + L + F VDT
Sbjct: 94 MDWLFSNYGGSLSRLFAQDLQTLRSE--LLAVKGIGPETADSILLYAGNLPTFVVDTYTY 151
Query: 525 RIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
RI R G++P + + ++ L E E++ K D + E H L+ GK
Sbjct: 152 RIFSRHGFIPEESSYDEIK-SLFE-----ENLPK---------DVKLFNEYHALLVNTGK 196
Query: 585 VFCTKSKPNCNACPMR 600
+FC K K C CP++
Sbjct: 197 MFC-KPKKFCEQCPLK 211
>gi|388852390|emb|CCF54005.1| uncharacterized protein [Ustilago hordei]
Length = 635
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 36/200 (18%)
Query: 417 RNSGKQERS-RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
RNS RS + ++EA+ A E+ EAI+ G+ N A +K L + + HG
Sbjct: 176 RNSSAAHRSMTEHFGVQNWEAIHSAPESELVEAIRCGGLANNKARTIKGILAQTMERHGK 235
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+ L+ L + D+ L+ G+G K CV + + VDT+V R+ L WVP
Sbjct: 236 LSLDHLHNATDDEIMQELVRFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALRWVPE 295
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + HL E P Y LH LI GK+
Sbjct: 296 KANRDQTYYHLHERVP-----------------GDLKYALHVLLIKHGKM---------- 328
Query: 596 ACPMRGECRH-FASAFASAR 614
CRH A FA+ R
Sbjct: 329 -------CRHCSAKRFATVR 341
>gi|448652011|ref|ZP_21681024.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445769414|gb|EMA20488.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 238
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 420 GKQERSRDRMDSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--- 475
G+ S +DS D AL A+ E++E I G+ N +ER+ R+ E+G
Sbjct: 85 GEDANSEGDIDSTDLARALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAG 144
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP 534
D ++RD +K + LL + G+G K+ +CV L FPVDT+V RIA R+G P
Sbjct: 145 FD-AFVRDSDSEKVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAP 203
Query: 535 LQPLPESLQLHL 546
E+++ +L
Sbjct: 204 ADAAHETVRAYL 215
>gi|448428859|ref|ZP_21584485.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
gi|445675837|gb|ELZ28365.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
Length = 233
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P
Sbjct: 69 DRYD--DFAAIEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D+AKD+L I+G+G K+ V VDT+V R++ R G VP E
Sbjct: 127 TDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEA 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
L E P D+ T Y LH LI G+ C+ +C+
Sbjct: 187 LDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|448726638|ref|ZP_21709032.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
gi|445793968|gb|EMA44532.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
Length = 267
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGLK 502
++E I+ G+ N +E M R+V E+GS E++ D P ++ LL G+G K
Sbjct: 100 LAETIEPAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTDEEPATVRETLLDFSGVGPK 159
Query: 503 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
+ +CV L + FPVDT+V RI RLG P E ++ E ++ +
Sbjct: 160 TADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADADHEKVR----------EVLEAQVP 209
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASAFASARLAL 617
C H I FG+ +CT P C +ACPM C A+ +
Sbjct: 210 AEKCGFG-------HTATIQFGREYCTARSPACLDDPDACPMGDLCEQVGVYPATDEVVD 262
Query: 618 PG 619
P
Sbjct: 263 PA 264
>gi|289580004|ref|YP_003478470.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|448281243|ref|ZP_21472550.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|289529557|gb|ADD03908.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|445579173|gb|ELY33569.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
Length = 278
Score = 62.8 bits (151), Expect = 9e-07, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGL 501
+++E I G+ N + + D + E GS D ++ D PD ++ LL +RG+G
Sbjct: 109 QLAETISSAGLYNQKSAMLIDAAEWVCDEFGSADEFDRFVTDETPDTVRETLLDVRGVGP 168
Query: 502 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L FPVDT+V RI R+G P + E ++ L P +
Sbjct: 169 KTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPEADHEEVRTVLEAEVPAAK------ 222
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
C H I FG+ FCT KP C ACPM C
Sbjct: 223 ----CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADICEQ 260
>gi|258570499|ref|XP_002544053.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904323|gb|EEP78724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1143
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE---------------HGS 475
S+D+ +R A V EI +AIK G+ ++ ++ +K+ L + E HG+
Sbjct: 244 SVDWNKVRHAPVGEIRDAIKSGGLADIKSKHIKEILTMVYEENIARRNELQTDGKAKHGN 303
Query: 476 ---------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
+ L+++ + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 304 RVDHADEHMLSLDYMHALSKDEAMQRFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRL 363
Query: 527 AVRLGWVPLQPLPESLQLHLLEL 549
+ LGW+P + + E LE+
Sbjct: 364 SKWLGWIPSEKVNEITAFRHLEV 386
>gi|448330815|ref|ZP_21520091.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
gi|445610651|gb|ELY64420.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
Length = 272
Score = 62.8 bits (151), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A ++E I G+ N +E + D ++ E GS +++D P ++
Sbjct: 92 ESLASAEQSTLAETISGAGLYNQKSETLIDTAEWVLAEFGSAAAFDTFVKDEEPSAVRET 151
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LLS+RG+G K+ +CV L FPVDT+V RI R+G P E+++ L P
Sbjct: 152 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVRAVLERDVP 211
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
+ C H I FG+ +CT P C +ACPM C
Sbjct: 212 AEK----------CGFG-------HTATIQFGREYCTARTPACLEDPDACPMADICDQVG 254
Query: 608 SAFASARLALP--GPEEK 623
A+ + P PE++
Sbjct: 255 VYPATDEVVDPAAAPEDE 272
>gi|312134533|ref|YP_004001871.1| hhh-gpd family protein [Caldicellulosiruptor owensensis OL]
gi|311774584|gb|ADQ04071.1| HhH-GPD family protein [Caldicellulosiruptor owensensis OL]
Length = 234
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
R + L E + ++++E IK G N A+R+K+F N L RE S DLE L +
Sbjct: 68 RANILSVEGILQTPDEKLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDIS 126
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ LLS +G+G ++ + + L F VD+ R+ RLG L ES ++
Sbjct: 127 SLRKALLSQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYS 180
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLY--ELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+L ++ + KL +T + E H ++ K C KP CN C +R C +
Sbjct: 181 DLQAII----------MAKLTPQTKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNY 230
Query: 606 F 606
Sbjct: 231 L 231
>gi|392561532|gb|EIW54713.1| DNA glycosylase [Trametes versicolor FP-101664 SS1]
Length = 307
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 349 TRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKAD--------G 400
T +LGD +A+ D P +V H + T+P+++K + ++ G
Sbjct: 12 TPSLGD---IASPFPDYPHPTPTEAAEV---HALLSATHPDLAKRPRVPSEANDSARTCG 65
Query: 401 EKKNAIDWESLRKEV------QRNSGKQERSRDR-MDSLDYEALRCANVKEISEAIKERG 453
N + ESL + RNS +R D ++ A+ A ++ EAIK G
Sbjct: 66 SVPNVL--ESLIGTILSQNTSSRNSMAAKRGLDAAFGRNNFAAIADAKTADVVEAIKTGG 123
Query: 454 MNNMLAERMKDFLNRLVREHGSIDLEWLR--DVPP------------DKAKDYLLSIRGL 499
+ N A ++ L + R HG+ L+ L DV + A L+S G+
Sbjct: 124 LANKKAGVIQKILAEVHRRHGAYSLQHLAGADVKGKGKAAGGAPASDEAAMQELVSYDGV 183
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
G K+ CV L L +FPVDT+V R++ LGWVP + + Q HL
Sbjct: 184 GPKTASCVLLFCLGRSSFPVDTHVFRLSRLLGWVPQKADRVTAQAHL 230
>gi|225871801|ref|YP_002753255.1| base excision DNA repair protein, HhH-GPD family [Acidobacterium
capsulatum ATCC 51196]
gi|225793588|gb|ACO33678.1| base excision DNA repair protein, HhH-GPD family [Acidobacterium
capsulatum ATCC 51196]
Length = 239
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D L ++AL E+ E I+ G A ++ L + E+G LE + P + A
Sbjct: 58 DLLQFDALLALPEDELRELIRPSGFMQRKAATLRALLELVANEYGG-SLERFAEAPAETA 116
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ LL+I G+G ++ + + L L A VD + R+ VR G P + +Q L L
Sbjct: 117 RAQLLAITGIGPETADAILLYALGQPAMVVDEYLRRVVVRHGLAPERVRYAEVQQ--LAL 174
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
E C E H ++ GK C ++ PNC CP+RG+ ++
Sbjct: 175 AAFAEETDPAALADHCN-------EFHALVVQVGKAHCGRT-PNCAQCPLRGDLEYY 223
>gi|312623064|ref|YP_004024677.1| hhh-gpd family protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203531|gb|ADQ46858.1| HhH-GPD family protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 225
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
+++ L E + ++++E IK G N A+R+K+F N L RE S DLE L +
Sbjct: 59 KLNILSVEGILQTPEEKLAELIKAAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDIS 117
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ LLS +G+G ++ + + L F VD+ R+ RLG L ES ++
Sbjct: 118 SLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYN 171
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+L + I L P+ + E H ++ K C KP CN C +R C ++
Sbjct: 172 DLQAI---IMANLTPQ-----TKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYY 222
>gi|448737131|ref|ZP_21719183.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
gi|445804344|gb|EMA54601.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
Length = 267
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGLK 502
++E I+ G+ N +E M R+V E+GS E++ + P ++ LL G+G K
Sbjct: 100 LAETIESAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTEEEPATVRETLLDFSGVGPK 159
Query: 503 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
+ +CV L + FPVDT+V RI RLG P E ++ E ++ +
Sbjct: 160 TADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADADHEDVR----------EVLEAQVP 209
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASAFASARLAL 617
C H I FG+ +CT P C +ACPM C A+ +
Sbjct: 210 AEKCGFG-------HTATIQFGREYCTARSPACLDDPDACPMGDRCEQVGVYPATDEVVD 262
Query: 618 P 618
P
Sbjct: 263 P 263
>gi|322371204|ref|ZP_08045756.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
gi|320549194|gb|EFW90856.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
Length = 268
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E L A+ E+++ I+ G+ N A+ + + R++ + GS E++R+ P++ +
Sbjct: 90 ETLAKADHGELADTIRSAGLYNQKADVIIESAERVLADFGSAAAFDEFVREEEPNEVRSE 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL + G+G K+ +CV L + FPVDT+V RI R+G P E ++
Sbjct: 150 LLDMNGVGPKTADCVLLFSGGQSGVFPVDTHVHRIYRRMGIAPADADHEDVR-------- 201
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
E +++ + C H I FG+ +C+ KP C ACPM C
Sbjct: 202 --EVLEREVPAEKCGFG-------HTASIQFGREYCSARKPACLDGPEACPMFDLCEQ 250
>gi|220931064|ref|YP_002507972.1| HhH-GPD family protein [Halothermothrix orenii H 168]
gi|219992374|gb|ACL68977.1| HhH-GPD family protein [Halothermothrix orenii H 168]
Length = 224
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 446 SEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVE 505
++ IK G NM A ++K F+N L ++G L+ + P K +D LL + G+G ++ +
Sbjct: 84 AKMIKPAGYYNMKARKIKAFINFLFEDYGG-SLDEMFQEPLSKIRDKLLEVYGIGPETAD 142
Query: 506 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 565
+ L F +D RI R+G++ +LQ +++ P I
Sbjct: 143 SILLYAGEFPVFVIDAYTKRIFSRIGYIEENIGYHTLQKMIMDNLPARTGIYN------- 195
Query: 566 KLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
E H L+ GK C K+ P C CP+
Sbjct: 196 --------EYHALLVALGKEICKKNNPLCEKCPL 221
>gi|448449860|ref|ZP_21591955.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
gi|445812626|gb|EMA62617.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
Length = 233
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P
Sbjct: 69 DRYD--DFAAVEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D+AKD+L I+G+G K+ V VDT+V R++ R G VP E
Sbjct: 127 TDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEA 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
L E P D+ T Y LH LI G+ C+ +C+
Sbjct: 187 LDEQVP----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|297585115|ref|YP_003700895.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
gi|297143572|gb|ADI00330.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
Length = 211
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E +R +E+ E I+ G M A+R++ FL HG D+ L+ V D ++ LL
Sbjct: 58 ERIRAMTDEELEERIRPSGFFRMKAQRLRAFLE-WFESHGD-DVRALQQVETDVLREELL 115
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++G+G ++ + + L L+ F +D RI R+G+ P+
Sbjct: 116 QVKGIGAETADSILLYALYRPVFVIDAYTHRIMNRIGY----QFPKKYN----------- 160
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Q + L K D+ + H Q + K C K KP C CP+ EC
Sbjct: 161 QAQAFFEEALPK-DEALYNDFHAQFVRHAKEHC-KKKPVCEGCPLEPEC 207
>gi|226356223|ref|YP_002785963.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226318213|gb|ACO46209.1| putative DNA-(apurinic or apyrimidinic site) lyase (Endonuclease
III) [Deinococcus deserti VCD115]
Length = 237
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
G+ M A + L L G++DL +R + +A+ L + G+G+K+ + L L
Sbjct: 75 GLAQMKAGYIHGILVHLDERLGTLDLSAVRKLNDQEARTLLEGLPGVGMKTASLILLFDL 134
Query: 513 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 572
A PVDTN+ RIA RL VP + PE ++ +++ + W +R
Sbjct: 135 LRPALPVDTNIERIAKRLELVPQRWTPEKVERW-------FDAVVRRDWA------ERAT 181
Query: 573 YELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ H + G++ C P C+ C +RG C
Sbjct: 182 F--HVAGVRHGRLTCRPRDPRCDQCVLRGLC 210
>gi|288560832|ref|YP_003424318.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
gi|288543542|gb|ADC47426.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
Length = 215
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D A+ A V+ + E IK G + A R+ + L+ ++G +VP + D
Sbjct: 64 DIYAVADAPVEHVQELIKPAGFYRVKAARILEVSRILIDQYGG-------EVP--REMDE 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
+L + G+G K+ CV + A PVDT+V RI+ R G + E+ Q+ +
Sbjct: 115 MLKLPGVGRKTANCVIVFAFQDAAIPVDTHVHRISNRWGIADTKDPEETEQV-------L 167
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+E + K LW L L ++ FG+ C P C+ CP+ C + S
Sbjct: 168 MEKVPKDLWVDLNDL-----------MVQFGQTICRPIGPQCDKCPISDLCDYDVS 212
>gi|330502366|ref|YP_004379235.1| DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
[Pseudomonas mendocina NK-01]
gi|328916652|gb|AEB57483.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina NK-01]
Length = 212
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HGS V PD +D L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS--------VVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ L + H+ LI G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|226357357|ref|YP_002787097.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226319347|gb|ACO47343.1| putative DNA-(apurinic or apyrimidinic site) lyase (endonuclease
III) [Deinococcus deserti VCD115]
Length = 247
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++A+ A + ++ AI+ A R++ L + G +L++LR++P A +
Sbjct: 72 DWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATLRAIRDAPGGYNLDFLRELPVKDALKW 131
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G+K+ V L FPVDT+V R+ R+G +P
Sbjct: 132 LTDLPGVGIKTASLVLLFNYARPVFPVDTHVHRVNTRVGTIPRMG--------------- 176
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E L D LYELH L+ G+ CT S+P C C +R C FA
Sbjct: 177 -EQAAHRALLGLLPPDPPLLYELHINLLKHGQKVCTWSRPRCLQCVLRERCDAFA 230
>gi|415719736|ref|ZP_11467775.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
gi|388058996|gb|EIK81763.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
Length = 223
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKD 491
D +L A+VK++ IK G + A+ + RL + HG V P + +D
Sbjct: 66 DSRSLSAASVKQVESIIKPLGFYRVKAQHIIALSVRLESDFHG---------VVPSRMED 116
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L S+ G+G K+ VR FPVDT+V R+ RLGW P+ Y
Sbjct: 117 -LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRRDCNKPKK--------YA 167
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
ESI+K + D L ++LI G+ CT P C +CP++ C
Sbjct: 168 NPESIEKEI---TSYFDPADWTNLSHRLILHGRKICTARNPRCASCPLKTTC 216
>gi|313127078|ref|YP_004037348.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|448288454|ref|ZP_21479653.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|312293443|gb|ADQ67903.1| predicted endoIII-related endonuclease [Halogeometricum borinquense
DSM 11551]
gi|445569605|gb|ELY24177.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
Length = 277
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGL 501
E++E I G+ N +E + R+ G D E+++D PD + LL I G+G
Sbjct: 109 ELAETIASAGLYNQKSEMIIGAAERICESFGGADGFDEFVKDEDPDTVRKRLLDIHGVGP 168
Query: 502 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L + FPVDT+V RI R+G E ++ HL P +
Sbjct: 169 KTADCVLLFSGGRGGVFPVDTHVHRIGRRMGLASADADHEDVREHLEADVPAEK------ 222
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H +I FG+ +C KP C ACP+ C
Sbjct: 223 ----CGFG-------HTAMIQFGREYCKARKPACLDGPEACPLYDLC 258
>gi|448322514|ref|ZP_21511984.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
gi|445601272|gb|ELY55261.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
Length = 270
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 427 DRMDSLDY---EALRCANVKEISEAIKERGMNN----MLAERMKDFLNRLVREHGSIDLE 479
DR LD E+L A E++E I G+ N M+ ++ L G D
Sbjct: 81 DRYGGLDRDLAESLADAEQSELAETISSAGLYNQKSAMIVGAAEEILEEFDSAAGFDD-- 138
Query: 480 WLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPL 538
++R+ P+ ++ LL I G+G K+ +CV L FPVDT+V RI RLG P
Sbjct: 139 FVREAEPETVRERLLEIHGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADAD 198
Query: 539 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC---- 594
E+++ L P + C H I FG+ +CT KP C
Sbjct: 199 HEAVRAVLERDIPAAK----------CGFG-------HTASIQFGREYCTARKPACLEDP 241
Query: 595 NACPMRGEC 603
+ACPM C
Sbjct: 242 DACPMADVC 250
>gi|78043065|ref|YP_359967.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|77995180|gb|ABB14079.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 210
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
E+S I+ G+ A + L RE HG + PD + LL + G+G K
Sbjct: 71 ELSRQIRSLGLYRNKARNLIKIAEILDREYHGQV---------PDSFAE-LLKLPGVGPK 120
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ E + + + +FPVDT+V R+A RLG + PE + L +++P
Sbjct: 121 TAEVIVGVGFNKPSFPVDTHVFRVARRLGLSKART-PEGVSFDLKKIFP----------- 168
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +LH++LI FG+ C KP+CN CP C+
Sbjct: 169 ------PNSWIDLHHRLIFFGRRICKAQKPSCNICPFPEFCQ 204
>gi|448627973|ref|ZP_21672205.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445758595|gb|EMA09901.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 233
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+EA+ A+ ++++ I+ G+ + A R++ L + E G + L +L +P ++AK
Sbjct: 74 DFEAIESADHDKLADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPAEEAKG 133
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G V + L L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDALIP 193
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
D+ T Y LH LIT G+ FC+ +P+C+
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARRPDCS 220
>gi|312792801|ref|YP_004025724.1| hhh-gpd family protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179941|gb|ADQ40111.1| HhH-GPD family protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 232
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 406 IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
I W S+ K + + R + L E + + ++++E +K G N +R+K+F
Sbjct: 53 ISWNSVEKAIC--------NLKRANILSIEGILQTSDEKLAELVKPAGYYNQKTKRLKEF 104
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
N L +E S DLE L + + LLS +G+G ++ + + L F VD+ R
Sbjct: 105 CNFLKKEFNS-DLEKLFALDISSLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKR 163
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
+ RLG L ES ++ +L + I L P+ + E H ++ K
Sbjct: 164 LFYRLG------LIESEKISYNDLQAI---IMANLTPQ-----TKFFNEFHALIVKHCKE 209
Query: 586 FCTKSKPNCNACPMRGECRHF 606
C KP CN C +R C +F
Sbjct: 210 ICKSKKPICNKCCLRLICNYF 230
>gi|257053763|ref|YP_003131596.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
gi|256692526|gb|ACV12863.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
Length = 274
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 30/206 (14%)
Query: 427 DRMDSLDYE------ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL-- 478
DR S D E AL A E++E I G+ N + R+ + R+ E+G D
Sbjct: 81 DRYGSEDEEEVDLVDALADAEQAELAETISGAGLYNQKSARIIEIAQRIREEYGGEDDFD 140
Query: 479 EWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQP 537
++R+ P + ++ LL++ G+G K+ +CV L FPVDT+V RI RLG P
Sbjct: 141 AFVREEPAEAVRETLLAMNGVGPKTADCVLLFAGGRDGVFPVDTHVHRIYRRLGIAPPGA 200
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC--- 594
E+++ E ++K + C H I FG+ +C+ +P C
Sbjct: 201 DHEAVR----------EVLEKKVPEGKCGFG-------HTASIQFGREYCSAREPACLDG 243
Query: 595 -NACPMRGECRHFASAFASARLALPG 619
ACP+ C AS + P
Sbjct: 244 PEACPLYDLCDRVGIEPASGDVVDPA 269
>gi|330995722|ref|ZP_08319620.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329574781|gb|EGG56342.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 222
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A + I E ++ N A+ + LV + S +VP D D L+
Sbjct: 63 EAMAAATPETIYEYVRSVSYPNNKAKHLVGMARMLVENYHS-------EVPSDL--DELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPESLQLHLLELYPVL 553
+ G+G K+ ++ + A VDT+V R++ R+G VP P S++ L+ +P
Sbjct: 114 KLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPATCTTPYSVEKQLVRYFPA- 172
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
P + K H+ LI G+ CT P C AC ++ CRH+ +A
Sbjct: 173 --------PIIPKA--------HHWLILHGRYTCTARTPKCEACGLKMICRHYLRTHGAA 216
Query: 614 R 614
R
Sbjct: 217 R 217
>gi|20093633|ref|NP_613480.1| EndoIII-related endonuclease [Methanopyrus kandleri AV19]
gi|19886502|gb|AAM01410.1| Predicted EndoIII-related endonuclease [Methanopyrus kandleri AV19]
Length = 233
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
N+K++ E +++ G+ A+ +K+ R++ + +DLE + P ++A+ L+ + G+G
Sbjct: 84 NLKDLVETLRDAGLYRQKAKMIKECCERILAD--GLDLEEIVQKPTEEARRELMRLPGVG 141
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ + V L H PVDT+V R++ RLG + E + V E++ +
Sbjct: 142 PKTADVVLLFAGGHDVCPVDTHVARVSRRLGLTDSK-----------EYFEVQEAVHEM- 189
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + + H LI FG+ C KP C C +R C
Sbjct: 190 ------VPEGERGKAHLALIQFGREICRPRKPQCELCFVRRFC 226
>gi|337283826|ref|YP_004623300.1| endonuclease III [Pyrococcus yayanosii CH1]
gi|334899760|gb|AEH24028.1| endonuclease III [Pyrococcus yayanosii CH1]
Length = 234
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 29/168 (17%)
Query: 456 NMLAERMKDFL-----------NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
N E+M++FL R + E I LE PD ++ L+ + G+G K
Sbjct: 85 NASVEKMQEFLRSLKVGLWRSKGRWIVEVSRIILERYDGRVPDTLEE-LMKLPGIGRKCA 143
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V A PVDT+V R++ RLG PL+ PE ++ +L L P E W
Sbjct: 144 NIVLAYGFGKPAIPVDTHVNRVSKRLGLAPLEASPEKVEEYLKVLIPKEE------W--- 194
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
LY +++ ++ GK C KP CN CP+R C F +
Sbjct: 195 -------LY-VNHAMVDHGKKVCRPIKPKCNECPVRNLCPKVGIKFGT 234
>gi|312128249|ref|YP_003993123.1| hhh-gpd family protein [Caldicellulosiruptor hydrothermalis 108]
gi|311778268|gb|ADQ07754.1| HhH-GPD family protein [Caldicellulosiruptor hydrothermalis 108]
Length = 235
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 23/202 (11%)
Query: 406 IDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
I W S+ K + + R + L E + + +++SE IK G N A+R+K+F
Sbjct: 53 ISWNSVEKAIC--------NLKRANILSIEGILQTSDEKLSELIKPAGYYNQKAKRLKEF 104
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
N L RE S DLE L + + LLS +G+G ++ + + L F VD+ R
Sbjct: 105 CNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFETADSIILYGAEKPIFVVDSYTKR 163
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
+ RLG + + E IQ + L +LD E H ++ K
Sbjct: 164 LFYRLGLIESEKAK-------------YEDIQNLVMQNL-ELDTYIFNEFHALIVKHCKE 209
Query: 586 FCTKSKPNCNACPMRGECRHFA 607
C KP C C + C + +
Sbjct: 210 RCKSKKPMCKNCCLSAFCIYLS 231
>gi|374673082|dbj|BAL50973.1| endonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 218
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + ANV+EI + I+ G+ A+ + LV + G + L D+P DK
Sbjct: 61 DAQTMSQANVEEIEKLIRTIGLYKTKAKNILRTSQMLVTDFGDL----LPDLPKDK--KV 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL VP + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMQLIPE 174
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +Q H+ LI FG+ CT KP C CP+ C+
Sbjct: 175 EKWVQA-----------------HHHLIFFGRYHCTAKKPKCADCPVLDYCK 209
>gi|448362246|ref|ZP_21550857.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
gi|445648767|gb|ELZ01715.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
Length = 293
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 24/190 (12%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLL 494
L A +++E I G+ N +E + R+ E GS ++ D P + ++ LL
Sbjct: 117 LGAAEQTQLAETISSAGLYNQKSEVIIGAAERVCDEFGSAAAFDAFVTDEAPGEVRETLL 176
Query: 495 SIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+RG+G K+ +CV L FPVDT+V RI RLG P E ++ L + P
Sbjct: 177 DVRGVGPKTADCVLLFAGGRSGVFPVDTHVHRIYRRLGIAPPDADHEDVREVLEDEVPTA 236
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASA 609
+ C H I FG+ FCT KP C ACPM C
Sbjct: 237 K----------CGFG-------HTATIQFGREFCTARKPACLDDPEACPMADICDQVGVY 279
Query: 610 FASARLALPG 619
A+ + P
Sbjct: 280 PATGEVVDPA 289
>gi|409728179|ref|ZP_11271049.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|448722675|ref|ZP_21705208.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|445789100|gb|EMA39793.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
Length = 270
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYL 493
AL + +++E I+ G+ N +E + R+V E+G E++ P +D L
Sbjct: 92 ALSETDQDDLAETIQPAGLYNQKSETLGRIAGRVVEEYGGAAAFDEFVTAEDPATVRDTL 151
Query: 494 LSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L G+G K+ +CV L + FPVDT+V RI R+G P E ++ L + P
Sbjct: 152 LDFSGVGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRIGVAPPDADHEGVRAVLEDQVPA 211
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H I FG+ FC KP C +ACPM C
Sbjct: 212 EK----------CGFG-------HTATIQFGREFCKARKPACLDDPDACPMADLC 249
>gi|356565037|ref|XP_003550751.1| PREDICTED: DEMETER-like protein 2-like [Glycine max]
Length = 172
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 448 AIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
+I+ G+ A +K+ L L G + LE+LRD+ D+ K L +G+G K+V CV
Sbjct: 19 SIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACV 78
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVP 534
+ L FPVDT++ IA +GWVP
Sbjct: 79 LMFNLQQDDFPVDTHIFEIAKTMGWVP 105
>gi|239618511|ref|YP_002941833.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
gi|239507342|gb|ACR80829.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
Length = 210
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D A+ A +++ IK GM AER + E I +E PD ++
Sbjct: 57 DVFAIAKAKPEDLYNLIKAAGMYRQKAER--------IVEISKIIVETYNGKVPDTLEE- 107
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ V ++ A VDT+V RI+ RLGW+ + PE + L ++ P
Sbjct: 108 LTKLPGVGRKTANIVLNVSFGKAALAVDTHVHRISNRLGWIKTKQ-PEQSEFELQKILP- 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
+ LW L+ ++ FG+ C P CN CP+ CR+F+
Sbjct: 166 -----EELWG-----------PLNGSMVEFGRRVCKPVNPQCNECPINSCCRYFSDV 206
>gi|338731336|ref|YP_004660728.1| endonuclease III [Thermotoga thermarum DSM 5069]
gi|335365687|gb|AEH51632.1| endonuclease III [Thermotoga thermarum DSM 5069]
Length = 208
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 27/177 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ E+L A +EI + IK GM AER+ + ++ ++ VP D D
Sbjct: 57 NVESLAKAKPEEIYDLIKPSGMYRQKAERIIEVSKIILEKYNG-------KVPSDL--DE 107
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G K+ V A VDT+V RI+ RLG+V + PE + L ++ P
Sbjct: 108 LLKLPGVGRKTANIVLFQGFSIPAIAVDTHVHRISNRLGFVKTK-TPEQTEEELSKVLP- 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
K LW ++ ++ FG+ C P C CP EC++ SA
Sbjct: 166 -----KRLWG-----------PINVAMVNFGRNICLPRNPRCEKCPFSKECKYHNSA 206
>gi|148642332|ref|YP_001272845.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
gi|148551349|gb|ABQ86477.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A ++ E I+ G + A R+K+ L+ ++G PD K+ L+ + G+
Sbjct: 71 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGG--------EVPDNLKE-LVELPGV 121
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVDT+V RI+ R+G V + PE ++ L ++ P K
Sbjct: 122 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 174
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LW +L L ++ FG+ C P C CP+ C +
Sbjct: 175 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 209
>gi|254424749|ref|ZP_05038467.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
gi|196192238|gb|EDX87202.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
Length = 254
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D++ +R A + + AI A R++ L ++ +E G++ +++L D+P +A+ +
Sbjct: 83 DWKLVRDAKTEAVQAAIAPCTWPEQKAPRIQQILQQITKERGTLSIDFLADIPVAEARAW 142
Query: 493 LLSIRGLGLKSVECVRLL-TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L ++ G+G K+ V TL A PVD++ R+AVR +P ++ + +
Sbjct: 143 LETLTGVGPKTSAAVLAFSTLRRRALPVDSHHHRVAVRTELIP-------KKVTVGPSHA 195
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+LE+ W + +Y+ H L+ G+ C P C+ C + C
Sbjct: 196 ILEAQLPEDW------SAQQVYDNHEVLMLHGQHCCHYRNPTCDRCVILDLC 241
>gi|222444488|ref|ZP_03607003.1| hypothetical protein METSMIALI_00099 [Methanobrevibacter smithii
DSM 2375]
gi|261350964|ref|ZP_05976381.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434053|gb|EEE41218.1| endonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860304|gb|EFC92602.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 208
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A ++ E I+ G + A R+K+ L+ ++G PD K+ L+ + G+
Sbjct: 69 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGG--------EVPDNLKE-LVELPGV 119
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVDT+V RI+ R+G V + PE ++ L ++ P K
Sbjct: 120 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LW +L L ++ FG+ C P C CP+ C +
Sbjct: 173 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 207
>gi|114566493|ref|YP_753647.1| endonuclease III [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337428|gb|ABI68276.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 207
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 433 DY---EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
DY EAL ++ + E I+ G+ A +K +V ++ +VP D
Sbjct: 55 DYGTPEALAAIDLSLLEEKIRGVGLYRNKARHLKKMAQIIVEQYQG-------EVPSDF- 106
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
D LLS+ G+G KS +R + VDT+V R+A RLG V LPE + L E
Sbjct: 107 -DELLSLPGVGRKSANVIRSVVFKKPGLGVDTHVHRVANRLGLVN-SKLPEQTEKALKEQ 164
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P ++ E H+ LI G+ C KP CN C + G C
Sbjct: 165 IP-----------------EKCWSEAHHLLIFHGRRICQARKPQCNNCVLEGLC 201
>gi|333911156|ref|YP_004484889.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
gi|333751745|gb|AEF96824.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
Length = 220
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 23/198 (11%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
W+++ K ++ + ++ +D E L+ + IK G N+ AER+K+ +
Sbjct: 40 WKNVEKAIENLKKENLIDERKILEIDTEKLK--------KLIKPAGFYNIKAERLKNITH 91
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
+V+ +GS + + + + LL+++G+G ++ + + L L F VD RI
Sbjct: 92 HIVKNYGSTENLAKLPIKLEDLRKELLNVKGIGKETADSILLYALDRPIFVVDAYTKRIF 151
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
RLG + + ++ H+ E E++ K D + E H ++ GK +C
Sbjct: 152 SRLGVIEGGEEYDEIR-HIFE-----ENLPK---------DLKIYKEYHALIVELGKHYC 196
Query: 588 TKSKPNCNACPMRGECRH 605
K P C CP+ C +
Sbjct: 197 KKRNPACEKCPLSDLCDY 214
>gi|305664312|ref|YP_003860600.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
gi|304378881|gb|ADM28720.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
Length = 239
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I AI G+ N + + + L+R ++E+ L+++ D A+ LLSI G+G K+
Sbjct: 92 IINAINVAGLANRRLQSLLE-LSRHIKENPKF-FNDLKNLSVDDARKALLSIYGIGYKTA 149
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
+ L+ FP+DT++ R+ RLG V H Y E I+K++ +
Sbjct: 150 DVFLLMIYKKPTFPIDTHIMRVLKRLGIV-----------HEDMGY---EDIRKFILG-V 194
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + L LH LI G++ C P C+ CP+ +C
Sbjct: 195 VEHNPEELLSLHISLIAHGRMICKARNPRCSECPINTKC 233
>gi|325958693|ref|YP_004290159.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
gi|325330125|gb|ADZ09187.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
Length = 216
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A +E+ + IK+ G ++ A R+++ ++R++ E ++ VP D A+ LL
Sbjct: 63 EEIANAPTEEVEKLIKKSGFYHVKASRVRE-VSRIIHE------DYNDTVPEDMAE--LL 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ CV + H A PVD +V RI+ R+G V P+ + L+++ P
Sbjct: 114 SLPGVGRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVN-TGTPDETEEKLMKIVP--- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K W L L + FG+ C P CP+ C ++
Sbjct: 170 ---KKFWLPLNDL-----------FVQFGQTICKPIGPKHEICPIAEYCDYY 207
>gi|384440189|ref|YP_005654913.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
gi|359291322|gb|AEV16839.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
Length = 215
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A+ + + I+ G+ A+ + RLV EHG +VP DK L+
Sbjct: 68 EALAAASPEAVEPYIRRIGLYKTKAKNLVALARRLVAEHGG-------EVPRDKKA--LM 118
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT+V R++ RLG + L PE + L L+P
Sbjct: 119 ALPGVGWKTATVVLGAAFGVPGIAVDTHVARVSRRLG-LSLAKRPEQVGAELEALFP--- 174
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W LH+ L+ G+ CT KP C CP+ C
Sbjct: 175 ---KEDW-----------VFLHHALVLHGRYVCTARKPRCRDCPLAPSC 209
>gi|429853280|gb|ELA28361.1| HhH-GPD family base excision DNA repair protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 502
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 51/191 (26%)
Query: 413 KEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
KE+ + G ++ S+D+ A+R + ++++ +A+ G++ + +E+MK+ L ++ E
Sbjct: 216 KEIIKAYGVLDKDGLGAGSIDWNAVRLSPIQKLRKAMITGGLSKVKSEQMKEILEKVFEE 275
Query: 473 H---------------------------------------GSIDLEWLRDVPPDKAKDYL 493
+ G + L+ +R +P +A +
Sbjct: 276 NQLRKAAFVKEKESGEAASVKGAAKMSQGQKDHQLLKIDNGILTLDHIRTMPAAEAMPEI 335
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP------------LPES 541
L +G+G+K+ C+ L L +F VDT+V R + LGWVP + +P+
Sbjct: 336 LQYKGIGIKTTSCLLLFCLQQPSFAVDTHVWRFCLWLGWVPRKASADKTFKHCDYRVPDE 395
Query: 542 LQLHLLELYPV 552
L+ L +L+ V
Sbjct: 396 LKYGLHQLFIV 406
>gi|304314918|ref|YP_003850065.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
gi|302588377|gb|ADL58752.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
Length = 215
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 27/174 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A V+++ + +++ G ++ A R+++ L+ E+G VP D D LL
Sbjct: 61 EDVAYAPVEKLEQLVRKAGFYHVKARRIREVSRILLEEYGG-------RVPDDI--DELL 111
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ CV + + PVDT+V RI+ R+G V + PE + L+E+ P
Sbjct: 112 KLPGVGRKTANCVLVYAFNKPVVPVDTHVHRISNRIGLVNTRT-PEETERVLMEVIP--- 167
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+KY W EL+ ++ FG+ C P CP+ EC ++ S
Sbjct: 168 --RKY-W-----------IELNDLMVQFGQDICRPVGPRHEECPIADECDYYKS 207
>gi|170751703|ref|YP_001757963.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658225|gb|ACB27280.1| helix-hairpin-helix motif protein [Methylobacterium radiotolerans
JCM 2831]
Length = 253
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 421 KQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW 480
K R+R R D+EA+ A+V EI AI + A R++D L L G +DL +
Sbjct: 77 KALRARFR----DWEAVIDADVPEIEAAIAGVTWPELKAPRIRDVLRALRDRCGGLDLAF 132
Query: 481 LRDVPPDKAKDYLLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
L D+ + A+ +L +I G+G K S + TL A PVD++ R+A RLG +
Sbjct: 133 LADMEVEAARVWLQAIPGVGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLI------ 186
Query: 540 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
+ + +P+L + W + LY+ H L+ G+ C +P C C +
Sbjct: 187 -GKTVDVGPSHPILRAQLPADW------SAQDLYDNHEILMLHGQKVCHHRRPACGRCVL 239
Query: 600 RGECRHFASAFASARLALPGP 620
C SARL P
Sbjct: 240 VDLC-------PSARLPTREP 253
>gi|385830614|ref|YP_005868427.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|326406622|gb|ADZ63693.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
Length = 218
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+EI + I+ G+ A+ + LV + G + L D+P DK
Sbjct: 61 DAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLVTDFGDL----LPDLPKDK--KV 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL VP + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIP- 173
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
Q+ + H+ LI FG+ CT KP C CP+ C+
Sbjct: 174 ----------------QKKWVQAHHHLIFFGRYHCTAKKPKCADCPVLDYCK 209
>gi|399216845|emb|CCF73532.1| unnamed protein product [Babesia microti strain RI]
Length = 392
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 36/177 (20%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDV----PPD 487
L E + A+V+EI + I + G +N A+ +K E LRD PD
Sbjct: 239 LTIEKILTASVEEIDKHIGKVGFHNTKAKNLKKIC------------EILRDKFDKKIPD 286
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
D L S+ G+G K + L + VD +V RIA RLGWV PE + L
Sbjct: 287 NFND-LTSLPGIGPKMAHLILQLGFGKVEGIAVDVHVNRIANRLGWVKSNS-PEGTREQL 344
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ P K W +L L L+ FG++ CTK+ P C+ C C
Sbjct: 345 EKIIP------KKFWAQLNVL-----------LVGFGQMICTKAGPGCSTCLANSYC 384
>gi|336252280|ref|YP_004595387.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
gi|335336269|gb|AEH35508.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
Length = 274
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A ++E I+ G+ N +E + D ++ GS E+++D P + ++
Sbjct: 91 ESLAGAEQSILAETIQPAGLYNQKSEIIIDTAEWVLEAFGSAAAFDEFVKDEDPAEVRET 150
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL +RG+G K+ +CV L FPVDT+V RI RLG P E+++ L P
Sbjct: 151 LLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLEREVP 210
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
+ C H I FG+ +C+ KP C ACPM C
Sbjct: 211 AEK----------CGFG-------HTASIQFGREYCSARKPACLEDPEACPMADLCEQ 251
>gi|374308995|ref|YP_005055425.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
gi|358751005|gb|AEU34395.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
Length = 261
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
++E++R A V EI AI + A R+K L + +GS+ L++L DK + +
Sbjct: 85 NWESVRDATVAEIERAIAVVTFPEVKAPRLKAALMGITERYGSLTLDFLARYRTDKIRSW 144
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L G+G + S V TL A +D N R+ RL VP + + L+ L P
Sbjct: 145 LEQFEGVGPQVSAAVVNFSTLRRRAISIDANHLRVVQRLCVVPRADAAIT-EERLMRLVP 203
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
W D L E H + G+ CT S+P C ACP+ C
Sbjct: 204 -------ETW------DAEMLDEHHSLVKLHGQTLCTFSEPRCEACPLLDICPTGKRNTG 250
Query: 612 SARLALPGP 620
+L P P
Sbjct: 251 ELKLTAPTP 259
>gi|448473653|ref|ZP_21601795.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
gi|445819165|gb|EMA69014.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
Length = 232
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ E++E I+ G+ + A R++ L + E G + L +L +
Sbjct: 69 DRYD--DFAAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMA 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D AK +L I+G+G K+ V VDT+V R++ R G VP ++
Sbjct: 127 TDAAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPASASNQAAHNR 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN--ACPMRGEC 603
L E+ P +Y LH LI G+ C+ +C+ C +C
Sbjct: 187 LDEIVP-----------------DELIYPLHVLLIRHGREHCSARGADCDNPVCATYCDC 229
Query: 604 RH 605
+
Sbjct: 230 EY 231
>gi|395325971|gb|EJF58386.1| DNA glycosylase [Dichomitus squalens LYAD-421 SS1]
Length = 353
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 109/281 (38%), Gaps = 77/281 (27%)
Query: 370 PNSVEQVLSAHKVYDETNPNISKSKKRKAD-------------GEKKNAIDWESLRKEV- 415
P EQV H + T+P+I+ S R++ G+ + +D SL +
Sbjct: 59 PAEAEQV---HALLATTHPDIASSSARRSKPSDDSSSNSARTCGKVSSVLD--SLIGTIL 113
Query: 416 -----QRNSGKQERSRDR-MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL 469
RNS + D +++A+ A+ ++ EAIK G+ N A ++ L +
Sbjct: 114 SQNTSSRNSTAAKHGLDAAFGRHNFQAIAEASKDQVVEAIKTGGLANKKAAVIQKILREV 173
Query: 470 VREHGSIDLEWL-RDVPPD-----KAK-----------------DYLLSIRGLGLKSVEC 506
HG L+ L R V D KAK L+S G+G K+ C
Sbjct: 174 YDRHGEYSLQHLARVVQSDVDVNSKAKAEGSSQGRAAVSDEEAMQELVSYDGVGPKTASC 233
Query: 507 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 566
V L L +FPVDT+V R++ LGWVP + + Q HL K
Sbjct: 234 VLLFCLGRSSFPVDTHVFRLSRLLGWVPARADRVTAQAHL-----------------DLK 276
Query: 567 LDQRTLYELHYQLITFGKVFCTKSKPNCNACPM----RGEC 603
+ Y LH ++ G+ C C +GEC
Sbjct: 277 VPDHLKYGLHVLMVGHGR--------RCKGCKSTSSGKGEC 309
>gi|325279570|ref|YP_004252112.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
gi|324311379|gb|ADY31932.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
Length = 212
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 32/179 (17%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSI--DLEWLRDVPPDKA 489
D +A+ V++I IK N A+ + + +L R+ G + D+E L+ +P
Sbjct: 61 DAKAMAAGTVEDIYHLIKSISYPNNKAKHLHEMAQKLERDFQGKVPEDMELLQTLP---- 116
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
G+G K+ V + H A PVDT+V R++ R+G V P + L++
Sbjct: 117 --------GVGRKTANVVMAVAFHKPAMPVDTHVFRVSNRIGLVNNTKTPLETEKQLVKN 168
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
P L H+ LI G+ C KP C C +R CR F S
Sbjct: 169 IPA-----------------EILSTAHHWLILHGRYVCLARKPKCEECGIRQWCRFFQS 210
>gi|11499282|ref|NP_070520.1| endonuclease III [Archaeoglobus fulgidus DSM 4304]
gi|2648861|gb|AAB89556.1| endonuclease III (nth) [Archaeoglobus fulgidus DSM 4304]
Length = 209
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 28/159 (17%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+EI+E IK G + A+R+K+ +LV ++ S +VP + + L+ + G+G K
Sbjct: 72 EEIAELIKGVGFYRVKAKRLKELAKKLVEDYSS-------EVP--LSFEELVKLPGIGRK 122
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
S V L A PVDT+V RIA RLGW PE + L L+P+ W
Sbjct: 123 SANVV-LAYSDIPAIPVDTHVHRIANRLGWARTTK-PEETEEVLKRLFPL------EFWE 174
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
++ + ++ FG+ C KP C+ CP++G
Sbjct: 175 KVNR-----------AMVGFGQTVCKPQKPLCDECPIKG 202
>gi|115375240|ref|ZP_01462505.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|310820220|ref|YP_003952578.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115367707|gb|EAU66677.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|309393292|gb|ADO70751.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 237
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSI 476
+SG+ R R + +EA+R A E+ EAI A R++ L + R G +
Sbjct: 54 DSGRAFRQL-RARFVTWEAVRDAPCAEVQEAIAPVTWPEQKAPRLQHILREITARRGGDM 112
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPL 535
L++L +P +A+ +L S+ G+G K+ V L + L A PVD++ R+AVRLG +
Sbjct: 113 ALDFLGALPVPQARAWLESLPGVGPKTSAAVLLFSRLRRPALPVDSHHYRVAVRLGLL-- 170
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
S ++ + + +L ++ W + +Y+ H L+ G+ C P C
Sbjct: 171 -----SARIPVGPSHALLAALLPQEW------GAQQVYDHHEVLMLHGQRCCYHQSPACG 219
Query: 596 ACPMRGECRH 605
CP+ C H
Sbjct: 220 RCPVLELCPH 229
>gi|346314278|ref|ZP_08855799.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906636|gb|EGX76360.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 215
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ A++++I + I+ G+ A +++ L LE V P+ K+ L
Sbjct: 59 QAMAEADIRDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFDGVVPESMKE-LT 109
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + + VDT+V RI+ RLG +Q E ++ L
Sbjct: 110 SLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------ 163
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+++ W R H+ I FG+ FCT P C CP + C+
Sbjct: 164 KLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|323489718|ref|ZP_08094945.1| endonuclease III [Planococcus donghaensis MPA1U2]
gi|323396849|gb|EGA89668.1| endonuclease III [Planococcus donghaensis MPA1U2]
Length = 226
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ EH S+ VP D+ D
Sbjct: 64 DYVAV---SLEELQQDIRSIGLFRNKAKNIQALSQILIDEHNSV-------VPADR--DL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V + A VDT+V R+A RLG + P ++ +++ P
Sbjct: 112 LMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVAKRLGLSRWKDNPLQVEETIMKKTPA 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W + H+Q+I FG+ C P C+ CP+ CR
Sbjct: 172 DD------WSKT-----------HHQIIFFGRYHCKSQNPGCHICPLFDRCR 206
>gi|309775704|ref|ZP_07670702.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916543|gb|EFP62285.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 215
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ A +++I + I+ G+ A +++ L L+ V P+ KD L
Sbjct: 59 QAMAEAQLQDIEDKIRRIGLYRNKAHSIQNLSRSL--------LDSFDGVVPESMKD-LT 109
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + + VDT+V RI+ RLG +Q E ++ L
Sbjct: 110 SLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------ 163
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+++ W R H+ I FG+ FCT P C CP R C+
Sbjct: 164 KLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEECPFREFCK 202
>gi|223995635|ref|XP_002287491.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976607|gb|EED94934.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 251
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS-IRG 498
+ I AI+ G+ + A R++ L + +E + E+L+ D+ LS +G
Sbjct: 95 VDTTRIETAIRVAGLAKIRAARIQGMLKTVQQERNDANFEYLQFYDSDEEIQKELSRFKG 154
Query: 499 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
+G K++ CV L L FPVDT+V RI ++GW+ ES +L E
Sbjct: 155 MGPKTISCVLLFALGRPDFPVDTHVLRITKQIGWIGASHSRESAYEYLNERV-------- 206
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGK 584
P CK+D LH L+T GK
Sbjct: 207 ---PNECKMD------LHCLLVTHGK 223
>gi|55376682|ref|YP_134533.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|448642537|ref|ZP_21678496.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|55229407|gb|AAV44827.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|445759337|gb|EMA10615.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 233
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ E+++ I+ G+ + A R++ L + E G + L +L +P D+AK
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G V + L + P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
D+ T Y LH LIT G+ FC+ P+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDC 219
>gi|456012482|gb|EMF46170.1| Endonuclease III [Planococcus halocryophilus Or1]
Length = 226
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ EH S+ VP D+ D
Sbjct: 64 DYVAV---SLEELQQDIRSIGLFRNKAKNIQALSRILIDEHNSV-------VPADR--DL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V + A VDT+V R+A RLG + P ++ +++ P
Sbjct: 112 LMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVAKRLGLSRWKDNPLQVEETIMKKTPA 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W + H+Q+I FG+ C P C+ CP+ CR
Sbjct: 172 DD------WSKT-----------HHQIIFFGRYHCKSQNPGCHICPLFDRCR 206
>gi|448613277|ref|ZP_21663157.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
gi|445740174|gb|ELZ91680.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
Length = 268
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLE-WLRDVPPDKAKDY 492
E+L A+ + I +AI+ G+ N ++ ++ ++ GS D + ++R+ P +D
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNRKSKLIQGVAEDVLTNFGSEADFDRYVREEDPSTVRDR 149
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL + G+G K+ +CV L FPVDT+V RIA RLG + E+++ L P
Sbjct: 150 LLEMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGIASVDADHEAVRATLEREVP 209
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
+ C H +I FG+ FCT P C + CPM C
Sbjct: 210 AEK----------CGFG-------HTAMIQFGREFCTARSPVCLDDDDECPMADVCEQ 250
>gi|403175797|ref|XP_003334554.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|375171758|gb|EFP90135.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 465
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 38/174 (21%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
DSL ++LR A++ EI I + G A+ +K + L +H S DVP K
Sbjct: 163 DSLTVDSLRNASLTEIENCINKVGFWKKKAQYIKLMADDLFLKHES-------DVP--KT 213
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQL 544
D L++++G+G K + L L + L VDT+V RI+ RLGW+ PE+ ++
Sbjct: 214 LDELVALKGVGPK----MAFLALSNAWAINLGIGVDTHVHRISNRLGWLQTSD-PEATRI 268
Query: 545 HLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCNAC 597
+L P R L+ E+++ L+ FG+V C P C C
Sbjct: 269 NLESWLP------------------RDLFQEINHLLVGFGQVICLPVGPKCEDC 304
>gi|448501053|ref|ZP_21612062.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
gi|445695794|gb|ELZ47894.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
Length = 233
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRSLTAIREETGGAYSLAFLDALPTDDAKA 132
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHDVLDERVP 192
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN--ACPMRGECRH 605
+Y LH LI G+ C+ +C+ C +C H
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNADCDNPVCEAYCDCEH 231
>gi|448651578|ref|ZP_21680628.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445770458|gb|EMA21521.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 233
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ E+++ I+ G+ + A R++ L + E G + L +L +P D+AK
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G V + L + P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
D+ T Y LH LIT G+ FC+ P+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDC 219
>gi|448352659|ref|ZP_21541440.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
gi|445641938|gb|ELY95009.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
Length = 278
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGL 501
+++E I G+ N + + D + E GS ++ D PD ++ LL +RG+G
Sbjct: 109 QLAETISSAGLYNQKSGMLIDAAEWVCDEFGSAAEFDRFVTDEAPDTVRETLLDVRGVGP 168
Query: 502 KSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L + FPVDT+V RI R+G P + E ++ L P +
Sbjct: 169 KTADCVLLFAGGRNGVFPVDTHVHRIYRRMGIAPPEADHEEVRAVLEAEVPAAK------ 222
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRH 605
C H I FG+ FCT KP C ACPM C
Sbjct: 223 ----CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADLCEQ 260
>gi|428671556|gb|EKX72474.1| endonuclease III family member protein [Babesia equi]
Length = 666
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 33/212 (15%)
Query: 398 ADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISE-----AIKER 452
AD ++++L + + K + + MD L L ++ EISE I
Sbjct: 471 ADSPDPATYEFQTLVACMLSSQTKDQVTAQTMDVLKKRGLTLDSIMEISEEELDTLISRV 530
Query: 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
G +N A+ +K + +I E PD ++ L+S+ G+G K V L
Sbjct: 531 GFHNTKAKNIK--------KTATIIHEKFGGRVPDTMEE-LVSLPGVGPKMANLVIQLAF 581
Query: 513 HHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
+ VD +V RI+ RLGWV + P+ +L L EL P Q+
Sbjct: 582 KRIDGISVDLHVHRISNRLGWVKTK-TPDETRLQLQELIP-----------------QKL 623
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E+++ L+ FG+ CT + P C C C
Sbjct: 624 WAEVNHLLVGFGQTICTAAGPGCATCGANKWC 655
>gi|410668198|ref|YP_006920569.1| ultraviolet N-glycosylase/AP lyase Pdg [Thermacetogenium phaeum DSM
12270]
gi|409105945|gb|AFV12070.1| ultraviolet N-glycosylase/AP lyase Pdg [Thermacetogenium phaeum DSM
12270]
Length = 219
Score = 60.1 bits (144), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 27/177 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A+V E+++ IK G+ A + ++ EHG +VP D
Sbjct: 67 DVTALARASVDEVADVIKSTGLYRSKAAHLVAAAKKIAAEHGG-------EVPSDLHP-- 117
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G K+ V VDT+V R+A R+G + PE + L EL P
Sbjct: 118 LLELPGVGRKTANVVLANAFGKPGLGVDTHVHRVANRIGLCS-EKHPEGTEKRLKELLP- 175
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
+R H+ LI G+ FC KP C +C +R CR SA
Sbjct: 176 ----------------ERDWGRAHHLLIFHGRRFCRARKPECPSCVLRDICRSSPSA 216
>gi|255513717|gb|EET89982.1| HhH-GPD family protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 252
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ + I+ G A+R+K ++ GS+ +D + + LLS+ G+G ++
Sbjct: 104 LQKLIRSSGFYRQKAKRLKAVSKHIISSSGSVKAFLSKDKAALRKE--LLSMDGIGPETA 161
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
+ V L F VD RI RL + + LQ H P SI K
Sbjct: 162 DSVLLYAAGKRIFVVDAYTKRIMSRLYGTNPKIGYDELQSHFHAELPKSVSIYK------ 215
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
++H QL+ GK +C K+KP C+ CP++G C+++ + A
Sbjct: 216 ---------DMHAQLVELGKNYC-KTKPECSPCPLKGGCKYYKANIA 252
>gi|240103334|ref|YP_002959643.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
gi|239910888|gb|ACS33779.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
Length = 230
Score = 60.1 bits (144), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E + V E+ E +++RG+ L + +++ + R I LE PD K+
Sbjct: 71 DIETIANTPVDEMREFLRKRGVG--LWKTKGEWIVKASR----IILEKYGGKVPDDIKE- 123
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +L+EL P
Sbjct: 124 LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVPPEKVEEYLMELIPK 183
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +++ ++ G+ C +P C +CP++ C
Sbjct: 184 ----EKWIY-------------VNHAMVDHGRSICRPIRPKCESCPLKELC 217
>gi|282165629|ref|YP_003358014.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282157943|dbj|BAI63031.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 293
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
R + +D + A+ KE+ E I G A + + +++ G LEW++ V +
Sbjct: 124 RYNGIDVHKMAGADKKELEELIHYSGPYK--AAYIIECSRQIIERWGG-SLEWMKKVSTE 180
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+A++ LLS+ G+G K+ +CV L +L H PVDT++ R++ RLG E+ +
Sbjct: 181 EAREALLSLYGVGPKTADCVLLFSLGHSVTPVDTHICRVSQRLGLSTSTGDSEAAK---- 236
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
V E ++K R H +I G+ FC P + CP+ C
Sbjct: 237 --RKVKEDLEK---------KHRIPGMAHLLIINLGRDFCKALVPLHHICPVEDIC 281
>gi|156041124|ref|XP_001587548.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980]
gi|154695924|gb|EDN95662.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 347
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFL------NRLVREHGSI--------- 476
+D+EA+R A ++++ EAIK GM N+ + K L N + R+ G +
Sbjct: 213 VDWEAVRLAPLEKLYEAIKTEGMGNVKSRSCKAILDMVHEENVIRRQRGKVATNSRGIDL 272
Query: 477 -DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
LE +R + D+A D ++ G+G K+ C+ + + H AF VDT+V +I+ R
Sbjct: 273 LSLEHMRSLSKDEAFDKFITFPGVGPKTAACIISICMQHNAFAVDTHVYQISDR 326
>gi|296133481|ref|YP_003640728.1| HhH-GPD family protein [Thermincola potens JR]
gi|296032059|gb|ADG82827.1| HhH-GPD family protein [Thermincola potens JR]
Length = 232
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGS 475
RN K + L EA+ A ++EI + I M A++++ F+N ++ HG
Sbjct: 50 RNVSKAIENLRAAGILTLEAMYKAPIEEIEKHIVPTLYWRMKAKKLRAFVNHIMDNYHGD 109
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
+D +D ++ + LLS+ G+G ++ + + L F VD RI RLG+
Sbjct: 110 LDKFLQKD--KEELRRELLSLYGIGPETADSIILYAAEQPVFVVDAYTRRIFHRLGFFEE 167
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ +Q ++ P D R E H ++ G FC+ KP+C
Sbjct: 168 SVSYDEMQQFFMKHIPP---------------DVRYYNEYHALIVGIGNRFCSNKKPDCG 212
Query: 596 ACPMRGECR 604
CP++ CR
Sbjct: 213 NCPIQSVCR 221
>gi|337286496|ref|YP_004625969.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
gi|335359324|gb|AEH45005.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
Length = 217
Score = 60.1 bits (144), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYL 493
+AL + + +++ I+ G + A+R+K+F++ LV E HG +LE L + +KA++ L
Sbjct: 64 QALYEISHETLAKLIRPAGYFRVKAKRLKNFVHLLVEEYHG--ELEALFSLGLEKAREKL 121
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
L ++G+G ++ + + L + F +D RI +R G E LQ ++ P
Sbjct: 122 LLVKGIGPETADSMLLYAGNLPIFVIDAYTRRILLRHGLAHEDMSYEDLQSLFMKNLPK- 180
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
D + E H L+ GK FC KP C CP++G
Sbjct: 181 --------------DVKLFNEYHALLVACGKNFCRPKKPLCEECPLKG 214
>gi|449469507|ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucumis sativus]
Length = 234
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E + A K I +AI+ G+ + A +K+ L+ L + G + LE+LRD+ D+ K L
Sbjct: 143 WEDVLSAESKCIEDAIRCGGLASTKASCIKNILSSLSKRRGKLCLEFLRDLSIDEIKAEL 202
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
+ +G+G K+V CV + L FPVDT+V
Sbjct: 203 STFKGIGPKTVACVLMFNLQKDDFPVDTHV 232
>gi|300770189|ref|ZP_07080068.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762665|gb|EFK59482.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 228
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYL 493
EAL A+V E+ I+ N A+ + N L+ + +G + P++ +D L
Sbjct: 63 EALAAASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEV---------PEQIED-L 112
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ + G+G K+ + + + A VDT+V R++ RLG P +++ L++ P
Sbjct: 113 IKLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVKFLP-- 170
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
+ T+ H+ LI G+ C KP C CP+ C+++ + F
Sbjct: 171 ---------------EETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYYETQF 212
>gi|448456097|ref|ZP_21594950.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
gi|445812932|gb|EMA62918.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
Length = 233
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKDY 492
+EA+ A+ E++E I+ G+ + A R++ L + E G + L +L + D AK++
Sbjct: 74 FEAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKEW 133
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L +I+G+G K+ V VDT+V R++ R G VP + L EL P
Sbjct: 134 LTAIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNRAAHDALDELVP- 192
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN--ACPMRGECRHFA 607
+Y LH LI G+ C+ +C+ C +C A
Sbjct: 193 ----------------DELIYPLHVLLIRHGRTHCSARGADCDNPVCEAHCDCEFCA 233
>gi|389861151|ref|YP_006363391.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
gi|388526055|gb|AFK51253.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
Length = 227
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+ R+ L E + +V E+++ IK G++ A R+ + + L + E +R +
Sbjct: 58 KSRLGKLTPEKVLSLDVGELAQLIKPAGLHLQRARRIVELASYLRDRLEEFESE-VRRMD 116
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
+A++ L+++ G+G K+ + V L+ AFPVDT++ RI RLG+V +
Sbjct: 117 VLEAREVLMNLPGVGDKTADVVLLVYFGKPAFPVDTHIKRITTRLGFVKGGSYKKVSGFW 176
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L P KYL E H LI G+ C KP C+ CP++ C +
Sbjct: 177 QSCLPP-----DKYL-------------ETHLLLIQHGRAICKARKPLCHECPIKEFCEY 218
Query: 606 FAS 608
+ S
Sbjct: 219 YKS 221
>gi|423091165|ref|ZP_17079423.1| endonuclease III [Clostridium difficile 70-100-2010]
gi|357555447|gb|EHJ37097.1| endonuclease III [Clostridium difficile 70-100-2010]
Length = 350
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 256
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 257 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMETIP------KERW 309
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 310 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|336421321|ref|ZP_08601480.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
gi|336001507|gb|EGN31644.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
Length = 208
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A A++KE+ + IK G + A+ + + +V ++ +VP K+ + L S
Sbjct: 63 AFASADLKELEQDIKPTGFYHNKAKNIISCMKDIVDKYDG-------EVP--KSLEELTS 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ +R H + VDT+V RI+ RLG Q PE ++ L++ P
Sbjct: 114 LAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKELPK--- 169
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 ------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|218281634|ref|ZP_03488042.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
gi|218217269|gb|EEC90807.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
Length = 208
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKDYLLSIRG 498
A V E+ IK G+ A + + LV R HG + P KD L+S+ G
Sbjct: 64 ATVSELEPYIKRIGLYRNKARSISNLSKDLVERYHGQV---------PYTYKD-LMSLAG 113
Query: 499 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
+G K+ VR + +F VDT+V R++ RLG E ++ E +++
Sbjct: 114 VGRKTANVVRSVAFDIPSFAVDTHVNRVSKRLGLAKYNDSVEKVE----------EKLKR 163
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K+D+ + H+ I FG+ C P C CP + C+
Sbjct: 164 -------KIDRSRWNQGHHDFIFFGRYLCHSRNPECERCPFKSFCK 202
>gi|425773936|gb|EKV12261.1| Base excision DNA repair protein [Penicillium digitatum PHI26]
gi|425782386|gb|EKV20298.1| Base excision DNA repair protein [Penicillium digitatum Pd1]
Length = 307
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ ++ + G++ A+ + L ++ H + L L + ++ +
Sbjct: 143 DYNAISKGGETKLQNVLSCGGLHIRKAKFIMSILRQVKARHDAYTLNHLWPLDDEQVMEE 202
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LS G+G K+ CV LTL+ F VDT++ RI LGW PL PE + HL
Sbjct: 203 FLSYNGVGPKTASCVLALTLNRQRFVVDTHIYRITGFLGWRPLHATPEQARAHL------ 256
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA-CPMRGEC 603
K+ Y LH IT G + P C A ++G C
Sbjct: 257 -----------ETKIPDEFKYSLHLLFITHG-----RECPECKAGGKLKGSC 292
>gi|51892440|ref|YP_075131.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51856129|dbj|BAD40287.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 232
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 469 LVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
L+R+ G++ LE LR P D+ +L+S+ G+G+K+ CV L L FP D + R+
Sbjct: 91 LLRDRFGAVTLEPLRQWPDDECLAFLMSLPGMGMKTALCVMLYGLDRPVFPADAHCIRVL 150
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
R+G + + Q L + P Y LH L+ G+ C
Sbjct: 151 KRMGVIDARLAHRPAQRELARIVP-----------------GHLGYVLHVNLVAHGQQIC 193
Query: 588 TKSKPNCNACPMRGECRHFASAFASARLALP 618
T P C C + C +A +A LP
Sbjct: 194 TARCPRCAECVVANYCLLGEAAQQAAEGQLP 224
>gi|423083243|ref|ZP_17071818.1| endonuclease III [Clostridium difficile 002-P50-2011]
gi|423086615|ref|ZP_17075014.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546324|gb|EHJ28255.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546344|gb|EHJ28274.1| endonuclease III [Clostridium difficile 002-P50-2011]
Length = 350
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 256
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 257 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 309
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 310 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|448733380|ref|ZP_21715625.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
gi|445803114|gb|EMA53414.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
Length = 279
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIR 497
A+ ++E I+ G+ N + M R+V E+G + ++ + P+ +D LL
Sbjct: 105 ADQPTLAETIESAGLYNQKSATMIAIAERIVDEYGGAEEFNGFVAEGDPETVRDALLDFS 164
Query: 498 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ +CV L + FPVDT+V RI RLG P + E ++ + + P +
Sbjct: 165 GVGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPPEADHEEVRAVVEDQVPAEK-- 222
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H I FG+ +CT KP C +ACPM C
Sbjct: 223 --------CGFG-------HTASIQFGREYCTARKPACLDDPDACPMADLC 258
>gi|281491571|ref|YP_003353551.1| endonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375289|gb|ADA64802.1| Endonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 218
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+EI + I+ G+ A+ + LV + G + L D+P DK
Sbjct: 61 DAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLVTDFGDL----LPDLPKDK--KV 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL VP + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIP- 173
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
Q + H+ LI FG+ CT KP C CP+ C+
Sbjct: 174 ----------------QEKWVQAHHHLIFFGRYHCTAKKPKCADCPVLDYCK 209
>gi|15673053|ref|NP_267227.1| endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|418037871|ref|ZP_12676231.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
gi|12724026|gb|AAK05169.1|AE006340_2 endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|354693995|gb|EHE93702.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
Length = 218
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+EI + I+ G+ A+ + LV + G + L D+P DK
Sbjct: 61 DAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLVTDFGDL----LPDLPKDK--KV 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL VP + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIP- 173
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
Q + H+ LI FG+ CT KP C CP+ C+
Sbjct: 174 ----------------QEKWVQAHHHLIFFGRYHCTAKKPKCADCPVLDYCK 209
>gi|332876792|ref|ZP_08444550.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047392|ref|ZP_09108999.1| endonuclease III [Paraprevotella clara YIT 11840]
gi|332685351|gb|EGJ58190.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529993|gb|EHG99418.1| endonuclease III [Paraprevotella clara YIT 11840]
Length = 222
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A + I E I+ N A+ + LV + S +VP D D L+
Sbjct: 63 EAMAAATPETIYEYIRSVSYPNNKAKHLVGMARMLVENYHS-------EVPSDL--DELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYPVL 553
+ G+G K+ ++ + A VDT+V R++ R+G VP P S++ L+ +P
Sbjct: 114 KLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPDTCTTPYSVEKQLVRYFP-- 171
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
+ + H+ LI G+ CT P C C ++ CRH+ +A
Sbjct: 172 ---------------DPIIPKAHHWLILHGRYTCTARTPKCEVCGLKMICRHYLRTHGAA 216
Query: 614 R 614
R
Sbjct: 217 R 217
>gi|313901141|ref|ZP_07834629.1| endonuclease III [Clostridium sp. HGF2]
gi|373121433|ref|ZP_09535301.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|312954099|gb|EFR35779.1| endonuclease III [Clostridium sp. HGF2]
gi|371665451|gb|EHO30616.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 215
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ A++ +I + I+ G+ A +++ L LE V P+ K+ L
Sbjct: 59 QAMAEADIHDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFNGVVPESMKE-LT 109
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + + VDT+V RI+ RLG +Q E ++ L
Sbjct: 110 SLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------ 163
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+++ W R H+ I FG+ FCT P C CP + C+
Sbjct: 164 KLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|15789648|ref|NP_279472.1| endonuclease III [Halobacterium sp. NRC-1]
gi|169235361|ref|YP_001688561.1| DNA-(apurinic or apyrimidinic site) lyase endonuclease III
[Halobacterium salinarum R1]
gi|10580010|gb|AAG18952.1| endonuclease III [Halobacterium sp. NRC-1]
gi|167726427|emb|CAP13212.1| endonuclease III [Halobacterium salinarum R1]
Length = 265
Score = 59.7 bits (143), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSID--LEWLRDVPPDKAKDYLLSIRGLGLK 502
+++ I G+ N + + +R+ E+G D ++R+ PD + LL + G+G K
Sbjct: 98 LADTISMAGLYNQKSATIIRIADRVCEEYGGADGFDAFVREGDPDAVRAALLDMTGVGPK 157
Query: 503 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
+ +CV L FPVDT+V RIA R+G P E+++ L P
Sbjct: 158 TADCVLLFAGGAPGVFPVDTHVHRIARRMGIAPAAADHEAVRAALEAAVP---------- 207
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFASAFASARLAL 617
C H +I FG+ +CT P C ACP+ C A+ +
Sbjct: 208 DAACGFG-------HTAMIQFGREYCTARDPACLDDPAACPLAEHCDRVGVDAATGAVVD 260
Query: 618 PG 619
P
Sbjct: 261 PA 262
>gi|257388060|ref|YP_003177833.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
gi|257170367|gb|ACV48126.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
Length = 236
Score = 59.7 bits (143), Expect = 6e-06, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 23/212 (10%)
Query: 390 ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSL-----DYEALRCANVKE 444
+++++ AD + + L + + E +R +SL D+ A+ A+ E
Sbjct: 26 VAQTEAHGADADAEPGEGVRQLVTTILSQNVADENTRRASESLFETYEDFAAIEAADHDE 85
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++E I+ G+ + A R++ L + E G + L +L +P +AK +L I+G+G K+
Sbjct: 86 LAETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDALPTAEAKAWLTDIKGVGPKT 145
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V VDT+V R++ R G VP E L + P
Sbjct: 146 ASVVLNFHFGKPTMAVDTHVERVSKRFGLVPEDASNERAHDALDAVVP------------ 193
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
D+ T Y LH LI G+ C+ P+C+
Sbjct: 194 ----DELT-YPLHVLLIRHGRTHCSARNPDCD 220
>gi|255654585|ref|ZP_05399994.1| endonuclease III [Clostridium difficile QCD-23m63]
gi|296449359|ref|ZP_06891141.1| endonuclease III [Clostridium difficile NAP08]
gi|296880707|ref|ZP_06904659.1| endonuclease III [Clostridium difficile NAP07]
gi|296261829|gb|EFH08642.1| endonuclease III [Clostridium difficile NAP08]
gi|296428280|gb|EFH14175.1| endonuclease III [Clostridium difficile NAP07]
Length = 285
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 141 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 191
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 192 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 244
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 245 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 278
>gi|167758647|ref|ZP_02430774.1| hypothetical protein CLOSCI_00987 [Clostridium scindens ATCC 35704]
gi|167663843|gb|EDS07973.1| endonuclease III [Clostridium scindens ATCC 35704]
Length = 208
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A A++KE+ + IK G + A+ + + +V ++ +VP K+ + L S
Sbjct: 63 AFASADLKELEQDIKPTGFYHNKAKNIISCMKDIVDKYDG-------EVP--KSLEELTS 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ +R H + VDT+V RI+ RLG Q PE ++ L++ P
Sbjct: 114 LAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKELPK--- 169
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 ------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|330834042|ref|YP_004408770.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
gi|329566181|gb|AEB94286.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
Length = 224
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSI 496
L A+++ I IK G+ N + +++ L R ++E D+ L DV P+ A+ L I
Sbjct: 72 LSNADLEVIKFCIKSIGLYNNKSITIRE-LARFIQETYHGDINKLLDVDPELARKELTRI 130
Query: 497 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
+G+G K+V+ V L + FPVDT++ RI+ RLG + Y V+
Sbjct: 131 KGIGNKTVDVVLLTCKGYKTFPVDTHIFRISKRLG--------------IKGNYKVVSEF 176
Query: 557 QKYLWPRLCKLDQRTLYEL---HYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K ++Y+ H LIT G+ C P C +C + CR++
Sbjct: 177 WK-----------NSVYDTLNAHLILITHGRKTCKAINPKCESCMINDCCRYY 218
>gi|296242399|ref|YP_003649886.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
gi|296094983|gb|ADG90934.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
Length = 230
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNN----MLAERMKDFLN-----RLVREH 473
E R R ++ E++ ++E+++ IK G++ +L E K F +L+RE
Sbjct: 55 ENLRKRFGVINPESVLNVGIEELADLIKPAGIHRERSRILLELAKIFCENMFEEKLIREV 114
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
D+E R + L+ + G+G K+ + V L+ FPVDT++ RI RLG+V
Sbjct: 115 EKNDVEASRKI--------LMRLPGVGPKTADVVLLVFFGKPVFPVDTHIRRITKRLGYV 166
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
E I + W Q LH LI G+ C KP
Sbjct: 167 KKDNYYE---------------ISNF-WA--SNTSQTNYMSLHLLLIAHGRRTCRALKPF 208
Query: 594 CNACPMRGECRH 605
C CP+ G C H
Sbjct: 209 CETCPINGFCEH 220
>gi|429216868|ref|YP_007174858.1| endoIII-related endonuclease [Caldisphaera lagunensis DSM 15908]
gi|429133397|gb|AFZ70409.1| putative endoIII-related endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 235
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD E + V +SE I+ G+ + + + L + V+E G ++L + P + K+
Sbjct: 81 LDPEKIVDLGVDNVSEIIRTAGLPKQKSHSIIE-LAKFVKEKGE---KYLLEKDPLQLKN 136
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L+ I G+G K+ + T ++ FPVDT++ RIA+R G +S+ L+E
Sbjct: 137 ELMRIPGIGEKTSDVFLSFTRNYPVFPVDTHIRRIALRWGLSDKNSY-KSISQALIE--- 192
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ P L + H LITFG+++C P C C ++ C
Sbjct: 193 -------FFGPDLSN-------KAHKLLITFGRIYCKAKNPRCKECFLKEIC 230
>gi|114704391|ref|ZP_01437299.1| endonuclease III [Fulvimarina pelagi HTCC2506]
gi|114539176|gb|EAU42296.1| endonuclease III [Fulvimarina pelagi HTCC2506]
Length = 222
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ + + +++AIK G+ N + +K L+ E+ R VP + ++ L+
Sbjct: 72 DAILALDDEAVAKAIKPCGLYNNKTKSLKKLCTALIEEYD-------RTVP--QTREGLM 122
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K + V T VDT+V R++ R+G + ++ L E P
Sbjct: 123 SLPGVGRKCADIVMSFTFGADVIAVDTHVHRVSNRIGLTDAKTADQTAA-QLEENAPA-- 179
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
W ++ H+ LI FGK C KP C CP+ CR++ + A+
Sbjct: 180 ------W---------AFHDGHFWLIQFGKAICVSRKPKCETCPVNDLCRYYTATGAA 222
>gi|380300663|ref|ZP_09850356.1| endonuclease III [Brachybacterium squillarum M-6-3]
Length = 224
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A ++++ ++ GM AER++ L+R+H VP D+A L ++ G+
Sbjct: 77 AEQEDLARLLRPLGMGATRAERVRGLAAALLRDHDGA-------VPDDQAA--LEALPGV 127
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ VR + H VDT+VGR+A RLGW P ++ +LE
Sbjct: 128 GRKTAHVVRGVWFGHPLLAVDTHVGRLARRLGWTTASD-PRRIEEDVLE----------- 175
Query: 560 LWPRLCKLD--QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
C+ D + L +LI G+ CT P C C + +C
Sbjct: 176 ----RCREDGAGADVTGLGLRLILHGRRVCTARAPRCGDCALAADC 217
>gi|255305554|ref|ZP_05349726.1| endonuclease III [Clostridium difficile ATCC 43255]
Length = 405
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 261 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 311
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 312 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 364
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 365 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|116748504|ref|YP_845191.1| endonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|116697568|gb|ABK16756.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Syntrophobacter fumaroxidans MPOB]
Length = 227
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A ++++ +K G A +K+ L EHG ++PP+ D L+ + G+
Sbjct: 81 APLEQLETDVKSTGFYRNKARNIKEACRVLAEEHGG-------EIPPNL--DILVKLPGI 131
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ + VDT+VGR++ RLG + PE ++ L+E+ P +
Sbjct: 132 GRKTANVILGNAFGIPGIVVDTHVGRVSERLGLTS-EKDPEKIERDLMEIIP------RE 184
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
W + C +QLI G+ C KP CP+R C H A+
Sbjct: 185 KWIKFC-----------HQLIGLGREICQARKPKTGVCPLRPHCDHAAA 222
>gi|422327448|ref|ZP_16408475.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371663288|gb|EHO28478.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
Length = 215
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ A++ +I + I+ G+ A +++ L LE V P+ K+ L
Sbjct: 59 QAMAEADIHDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFNGVVPESMKE-LT 109
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + + VDT+V RI+ RLG +Q E ++ L
Sbjct: 110 SLAGVGRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------ 163
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+++ W R H+ I FG+ FCT P C CP + C+
Sbjct: 164 KLKRERWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|291288604|ref|YP_003505420.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
gi|290885764|gb|ADD69464.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
Length = 210
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+++++++ IK GM M ++ + LV HG +VP D D LL++ G+
Sbjct: 68 ADIEDVAKIIKSTGMYKMKSKNIIGMAKALVENHGG-------EVPQDM--DELLALSGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ VR VDT+V RI+ R+G PE ++ L +L
Sbjct: 119 GRKTANVVRGNFWQKPGVVVDTHVKRISGRVGLTD-NTTPEKVEKDLEKLIK-------- 169
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+ C R +Y FG+ CT P C C + C+++AS
Sbjct: 170 -GEKQCDWCHRVIY--------FGREICTARSPKCGICGVSHVCKYYAS 209
>gi|330837763|ref|YP_004412404.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329749666|gb|AEC03022.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 237
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
++I AI G A + + +LV EHG + VPPDK + L+S+ G+G K
Sbjct: 95 EQIETAIAPAGFFRTKARNILEISKKLVEEHGGL-------VPPDK--EALVSLPGVGTK 145
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ L A VD +V IA R GWV + PE + L ++ P
Sbjct: 146 TANLTLNLGFGIDAICVDCHVHTIANRTGWVSTKN-PEQTEKELEKILP----------- 193
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+R L+ L+++G+ CT P C+ CP+ C
Sbjct: 194 ------RRFWIPLNELLVSYGQKICTSVSPRCSICPIASTC 228
>gi|255099671|ref|ZP_05328648.1| endonuclease III [Clostridium difficile QCD-63q42]
Length = 405
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 261 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 311
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 312 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 364
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 365 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|315230941|ref|YP_004071377.1| endonuclease III [Thermococcus barophilus MP]
gi|315183969|gb|ADT84154.1| endonuclease III [Thermococcus barophilus MP]
Length = 236
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 416 QRNSGKQERSRDRMDSLDY------EALRCANVKEISEAIKERGMNNMLAERMKDFLNRL 469
QRN ++ DR+ L + AL A ++++ + ++E G+ + +
Sbjct: 55 QRN---RDEVTDRVSELLFNRYPTVHALANAKIEDVQKLLRENGVG------LWKNKGKW 105
Query: 470 VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
+ E I LE PD ++ L+ + G+G K V A PVDT+V RI+ R
Sbjct: 106 IVECSRIILEKYGGKVPDMLEE-LVKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKR 164
Query: 530 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
LG P + PE ++ +L EL P K LW +Y +++ ++ GK C
Sbjct: 165 LGLAPPKAPPEKVEEYLKELIP------KELW----------IY-VNHAMVDHGKAICRP 207
Query: 590 SKPNCNACPMRGECRHFASAFAS 612
P C+ CP++ C +A F S
Sbjct: 208 ISPRCDECPLKTLC-PYAKGFIS 229
>gi|146306430|ref|YP_001186895.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina ymp]
gi|421504740|ref|ZP_15951681.1| endonuclease III [Pseudomonas mendocina DLHK]
gi|145574631|gb|ABP84163.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas mendocina
ymp]
gi|400344698|gb|EJO93067.1| endonuclease III [Pseudomonas mendocina DLHK]
Length = 212
Score = 59.7 bits (143), Expect = 8e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HGS PD +D L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ L + H+ LI G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|385773949|ref|YP_005646516.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
gi|323478064|gb|ADX83302.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
Length = 233
Score = 59.7 bits (143), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A++ +I A+K G+ A+R+K ++ ++ + L P ++ LL
Sbjct: 69 EKLSDADLSDIENALKISGLYKTKAKRLKIISKIILEKYNGLIDNLLNSSNP---REELL 125
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G+G K+ + V L + FP+DT++ R++ RLG VP+ E + L EL+ +
Sbjct: 126 KFEGIGEKTADVVLLTCRGYEVFPIDTHITRVSKRLGIVPMNAKYELISSTLKELFSAYD 185
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR 614
+Q +L LI G+ C KP CN+C ++ C +++ AR
Sbjct: 186 LLQLHL-----------------LLIAHGRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|227538653|ref|ZP_03968702.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241572|gb|EEI91587.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
Length = 228
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYL 493
EAL A+V E+ I+ N A+ + N L+ + +G + P++ +D L
Sbjct: 63 EALAVASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEV---------PEQIED-L 112
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+ + G+G K+ + + + A VDT+V R++ RLG P +++ L++ P
Sbjct: 113 IKLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVKFLP-- 170
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
+ T+ H+ LI G+ C KP C CP+ C+++ + F
Sbjct: 171 ---------------EETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYYETQF 212
>gi|170101314|ref|XP_001881874.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643229|gb|EDR07482.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 308
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 416 QRNSGKQ-ERSRDRMDSL----DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470
Q SG+ R++ +D++ ++ A+ A + + +AI+ G+ N A +++ L+ +
Sbjct: 112 QNTSGQNCHRAKTSLDAVFGRNNFVAIAQAPRERLVDAIRSGGLANKKAATIQNLLHSIR 171
Query: 471 REHGSIDLEWL-------RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
+HG L+ L R + D+ L+S G+G K+ CV L L +F VDT+V
Sbjct: 172 GKHGEYSLQHLAAAESSGRRMSDDEIMKELISYDGVGPKTASCVLLFCLGRNSFAVDTHV 231
Query: 524 GRIAVRLGWVPLQPLPESLQLHL 546
R++ LGWVP + Q HL
Sbjct: 232 FRLSKLLGWVPQKSDRVLAQAHL 254
>gi|448377863|ref|ZP_21560559.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
gi|445655807|gb|ELZ08652.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
Length = 153
Score = 59.3 bits (142), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 480 WLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPL 538
++R+ P +D LLS+ G+G K+ +CV L FPVDT+V RI+ RLG P
Sbjct: 23 YVRETEPATVRDELLSVHGVGPKTADCVLLFAGGQDGVFPVDTHVHRISRRLGIAP---- 78
Query: 539 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC---- 594
PE+ + V E+++ + C H +I FG+ +C+ KP C
Sbjct: 79 PEA------DHEGVREALEAAVPGPKCGFG-------HTAMIQFGREYCSARKPACLDGP 125
Query: 595 NACPMRGEC 603
ACP+ +C
Sbjct: 126 EACPLAADC 134
>gi|41615185|ref|NP_963683.1| hypothetical protein NEQ398 [Nanoarchaeum equitans Kin4-M]
gi|40068909|gb|AAR39244.1| NEQ398 [Nanoarchaeum equitans Kin4-M]
Length = 212
Score = 59.3 bits (142), Expect = 8e-06, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY+ L A ++EI + IK G+ A+ +K R + D ++R++P
Sbjct: 66 DYKNLAKAPIEEIEDLIKNVGLYKQKAKWIKTIAQRW-DYNKKCDESFIRNLP------- 117
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
G+G K L + VD +V RIA RLGWV + PE + L ++ P
Sbjct: 118 -----GVGRKVGNVYLNLVCNKPYIAVDVHVHRIANRLGWVKTKT-PEETEKQLYKIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
K WP+L ++ L+ FG+ C SKP C+ CP+
Sbjct: 171 -----KEYWPKL-----------NHMLVLFGRNICLPSKPKCDICPL 201
>gi|254974165|ref|ZP_05270637.1| endonuclease III [Clostridium difficile QCD-66c26]
gi|255091566|ref|ZP_05321044.1| endonuclease III [Clostridium difficile CIP 107932]
gi|255313292|ref|ZP_05354875.1| endonuclease III [Clostridium difficile QCD-76w55]
gi|255515983|ref|ZP_05383659.1| endonuclease III [Clostridium difficile QCD-97b34]
gi|255649074|ref|ZP_05395976.1| endonuclease III [Clostridium difficile QCD-37x79]
gi|306519188|ref|ZP_07405535.1| endonuclease III [Clostridium difficile QCD-32g58]
gi|384359832|ref|YP_006197684.1| endonuclease III [Clostridium difficile BI1]
Length = 350
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVGR 256
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 257 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 309
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ LI G+ C P C +CP++ +C ++
Sbjct: 310 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|397772834|ref|YP_006540380.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|448340522|ref|ZP_21529493.1| HhH-GPD family protein [Natrinema gari JCM 14663]
gi|397681927|gb|AFO56304.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|445629955|gb|ELY83225.1| HhH-GPD family protein [Natrinema gari JCM 14663]
Length = 276
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDY 492
E+L A ++E I G+ N +E + D ++ E S +++D P ++
Sbjct: 92 ESLASAERSTLAETISGAGLYNQKSETLIDTAEWVLAEFDSASAFDAFVKDEEPSVVRET 151
Query: 493 LLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LLS+RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 152 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 203
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGECRHFA 607
E +++ + C H I FG+ +C P C +ACPM C
Sbjct: 204 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARTPACLEDPDACPMADVCEQVG 254
Query: 608 SAFASARLALPG 619
A+ + P
Sbjct: 255 VFPATGEVVDPA 266
>gi|167645377|ref|YP_001683040.1| HhH-GPD family protein [Caulobacter sp. K31]
gi|167347807|gb|ABZ70542.1| HhH-GPD family protein [Caulobacter sp. K31]
Length = 242
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 390 ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAI 449
+S+ K G K+A+ W +R ++R + +E L E+ + I
Sbjct: 35 VSQLVKSSISGRTKDAVSW-----------AVYQRLKERFAT--WEDLAETPAAEVQDLI 81
Query: 450 KERGMNNMLAERMKDFLNRL-VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK-SVECV 507
K+ A + L + VR + L+ L ++ D A+ +L + G+G+K + +
Sbjct: 82 KDVTFPEEKARHLPHALRLIQVRSGWKLSLDHLAELELDSARWWLQGLPGVGVKVAASVL 141
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L+ A VDT+V R+A R+G VP L++L P + +
Sbjct: 142 NFSPLNMRALVVDTHVHRVASRMGLVPASYDTAHAYRALMDLVPDSWTAED--------- 192
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LYELH+ + G++ C+ P C AC ++ C
Sbjct: 193 ----LYELHWLMKGLGQLLCSHHAPRCGACALKATC 224
>gi|389844120|ref|YP_006346200.1| endonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858866|gb|AFK06957.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Mesotoga prima MesG1.Ag.4.2]
Length = 220
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 30/193 (15%)
Query: 417 RNSGKQERSRDRMDSL--DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG 474
R+ +E SR R+ S+ D ++L A +++ + IK GM A R+ + +V
Sbjct: 42 RDENTEEASR-RLFSVYPDPQSLIDAKPEDLYDLIKASGMYRQKAARIINCARMIV---- 96
Query: 475 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 534
E V PD ++ L++I G+G K+ V ++ A VDT+V RIA RLGWV
Sbjct: 97 ----ESFAGVVPDTLEE-LVTIPGVGRKTANIVLNVSFKKEALAVDTHVHRIANRLGWVK 151
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
+ P+ + L+++ P +W ++ ++ FG+ C P C
Sbjct: 152 TK-TPDDTEFALMKILP------PSIWG-----------PVNGSMVEFGREICRPIGPKC 193
Query: 595 NACPMRGECRHFA 607
N C + C +F+
Sbjct: 194 NLCGISQCCEYFS 206
>gi|332800460|ref|YP_004461959.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|438003859|ref|YP_007273602.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698195|gb|AEE92652.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|432180653|emb|CCP27626.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 217
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 28/201 (13%)
Query: 405 AIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKD 464
++ W+++ K + K S D + ++D + L + IK N A ++K+
Sbjct: 40 SVSWKNVEKAIDNLKAKGLLSLDAILAVDKDKL--------AALIKSTMYYNQKALKLKN 91
Query: 465 FLNRLVREHGSIDLEWL--RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 522
F + + +G D+ L + +P +A+ LLSI+G+G ++ + + L F VD
Sbjct: 92 FCRYIKQNYGG-DIYSLFEKSIPNMRAE--LLSIKGIGPETADSIILYAAAKPIFVVDAY 148
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITF 582
RI RLG++P +Q + P D E H ++
Sbjct: 149 TRRIFSRLGFLPDDAKYSQMQDFFMSNLPS---------------DVNLFNEYHALIVRL 193
Query: 583 GKVFCTKSKPNCNACPMRGEC 603
GK +C KP CN CP++ C
Sbjct: 194 GKDYCKNKKPLCNECPVKNHC 214
>gi|222479474|ref|YP_002565711.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
gi|222452376|gb|ACM56641.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
Length = 233
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +
Sbjct: 69 DRYD--DFAAIEAADHEELKETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMA 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D AK++L+ I+G+G K+ V VDT+V R++ R G VP ++
Sbjct: 127 TDDAKEWLMEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDA 186
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
L +L P +Y LH LI G+ C+ +C+
Sbjct: 187 LDKLVP-----------------DELIYPLHVLLIRHGRERCSARGADCD 219
>gi|300712085|ref|YP_003737899.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|448295774|ref|ZP_21485838.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|299125768|gb|ADJ16107.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|445583873|gb|ELY38202.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
Length = 267
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 26/177 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW---LRDVPPDKAKD 491
EAL A+ E++E I G+ N ++ M + E GS + E+ +R+ P+ +
Sbjct: 90 EALAEAHRDELAETISSAGLYNQKSDVMIAAAEEIREEFGS-EAEFDAFVRESEPETVRS 148
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
LL I G+G K+ +CV L + FPVDT+V RI R+G P + E+++ L E
Sbjct: 149 RLLEINGVGPKTADCVLLFSGGRGGVFPVDTHVHRIYRRMGIAPPEADHEAVREVLEEQV 208
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
P + C H I FG+ FC+ KP C ACP+ C
Sbjct: 209 PAEK----------CGFG-------HTASIQFGREFCSARKPACLDGPEACPLYDCC 248
>gi|399519845|ref|ZP_10760636.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112242|emb|CCH37195.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 212
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HGS PD +D L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ L + H+ LI G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|429192463|ref|YP_007178141.1| endoIII-related endonuclease [Natronobacterium gregoryi SP2]
gi|448325876|ref|ZP_21515254.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
gi|429136681|gb|AFZ73692.1| putative endoIII-related endonuclease [Natronobacterium gregoryi
SP2]
gi|445613968|gb|ELY67653.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
Length = 270
Score = 59.3 bits (142), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGLK 502
++E I G+ N + + +V E GS E++ + P+ ++ LL +RG+G K
Sbjct: 102 LAETISSAGLYNQKSRVLITTAEWVVSEFGSATAFDEFVTEKAPETVRETLLEVRGVGPK 161
Query: 503 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
+ +CV L FPVDT+V RI RLG E ++ L E+ P
Sbjct: 162 TADCVLLFAGGRTGVFPVDTHVHRIYRRLGIASPDADHEEVRTVLEEVVPA--------- 212
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H I FG+ +CT KP C +ACP+ C
Sbjct: 213 -KKCGFG-------HTATIQFGREYCTARKPACLEDPDACPLGDRC 250
>gi|348684342|gb|EGZ24157.1| hypothetical protein PHYSODRAFT_478985 [Phytophthora sojae]
Length = 278
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
+ ++ L E L + +E+SE +K G + A+++K R + ++ D+P
Sbjct: 107 ENVEGLTIETLLATSEEELSEVLKPVGFYHRKAQQLK-------RVAAILRTQFHGDIP- 158
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
++ D L + G+G K + LL H+ VDT+V R+A RLGW PE +
Sbjct: 159 -RSLDELQQLPGIGPKIGRVITLLAWGHVDGIVVDTHVHRLAQRLGWASTS-TPEDTRRE 216
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L + P + W +L ++ FG+ CT P+C++CP+ +C
Sbjct: 217 LEDWIP------REHWGKLS-----------LAVVGFGQTVCTAKHPSCSSCPLAPKC 257
>gi|399069064|ref|ZP_10749265.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
gi|398045317|gb|EJL38052.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
Length = 242
Score = 59.3 bits (142), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 390 ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAI 449
+S+ K G K+A+ W + R +DR + +E L A + E I
Sbjct: 35 VSQLVKSAISGRTKDAVSWAAY-----------HRLKDRFAT--WEDLAEAPDAVVLELI 81
Query: 450 KERGMNNMLAERMKDFLNRL-VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK-SVECV 507
KE A + L + VR + L+ L ++ D A+ +L + G+G+K + +
Sbjct: 82 KEVSYPEDKARHLPHALRLIQVRSGWKLSLDHLSELELDSARWWLQGLPGVGVKVAASVL 141
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L+ A VDT+V R+A RLG +P L++L P + +
Sbjct: 142 NFSPLNMRALVVDTHVHRVAGRLGLIPASYDTAHAYRALMDLVPDSWTAED--------- 192
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LYELH+ + G++ C P C AC ++ C
Sbjct: 193 ----LYELHWLMKGLGQLLCGHHAPRCGACSLKATC 224
>gi|322708253|gb|EFY99830.1| base excision DNA repair protein [Metarhizium anisopliae ARSEF 23]
Length = 364
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ ++I+ G+ ++ + L + ++G L+ L + + A ++S +G+G K+
Sbjct: 196 LEKSIQTGGLAATKSKVIIGILQQTKAKYGLYSLDHLFEASDEDAMKEMISFQGVGPKTA 255
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
CV L L +F VDT+V RI LGW P E Q HL + P E
Sbjct: 256 SCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDEEK--------- 306
Query: 565 CKLDQRTLYELHYQLITFGKVF--CTKSKPNCNACPMR 600
Y LH +T G+ C N C +R
Sbjct: 307 --------YPLHVLFVTHGRQCEECKAGGSNAKTCELR 336
>gi|125624307|ref|YP_001032790.1| endonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|389854667|ref|YP_006356911.1| endonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
gi|124493115|emb|CAL98079.1| putative endonuclease III (DNA repair) [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071089|gb|ADJ60489.1| putative endonuclease III (DNA repair) [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 218
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A+ A V+EI I+ G+ A+ + LV + G I L D+P DK
Sbjct: 61 DAQAMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLVADFGGI----LPDLPKDK--KL 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL V + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVAQKATVLEVEEKLMKLIPE 174
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +Q H+ LI FG+ CT KP C CP+ C+
Sbjct: 175 DKWVQS-----------------HHHLIFFGRYHCTAKKPKCAGCPVLDYCK 209
>gi|322700299|gb|EFY92055.1| base excision DNA repair protein [Metarhizium acridum CQMa 102]
Length = 364
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ ++I+ G+ ++ + L + ++G L+ L + + A ++S +G+G K+
Sbjct: 196 LEKSIQTGGLAATKSKVIIGILQQTKAKYGVYSLDHLFEASDEDAMKEMISFQGVGPKTA 255
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
CV L L +F VDT+V RI LGW P E Q HL + P E
Sbjct: 256 SCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDEEK--------- 306
Query: 565 CKLDQRTLYELHYQLITFGKVF--CTKSKPNCNACPMR 600
Y LH +T G+ C N C +R
Sbjct: 307 --------YPLHVLFVTHGRQCEECKAGGRNAKICELR 336
>gi|389690704|ref|ZP_10179597.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
gi|388588947|gb|EIM29236.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
Length = 255
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ A+ A +E+ E I+ A R++ L + HGS+ L++L +P D+A+ +
Sbjct: 66 DWRAMMDAPTEEVEETIQGVTWPEQKAPRLQAVLRAIEERHGSLSLDFLDTMPVDEARAW 125
Query: 493 LLSIRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L SI G+G K+ V + L A PVD++ R+A R G +P L L P
Sbjct: 126 LESIPGVGPKTSAAVLSFSKLRKAALPVDSHHHRVAQRTGLIPQSTAVGPSHAVLAALLP 185
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D + +Y+ H ++ G+ C P C C + C
Sbjct: 186 E-------------DWDAQQVYDHHEVMMLHGQRCCFFKSPACERCAILDLC 224
>gi|20093393|ref|NP_619468.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19918762|gb|AAM07948.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 216
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A+V+EI IK+ G + + R+K+ L+ E+ +VP D + LL
Sbjct: 70 EEMVGADVEEIEALIKDVGFYRVKSGRIKEISGILLEEYDG-------EVPDDM--ETLL 120
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ CV A VDT+V RI+ RLG V + PE +L L +++P
Sbjct: 121 KLPGVGRKTANCVLAHAFLKDALAVDTHVHRISNRLGLVETKT-PEETELELKKIFP--- 176
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
QKY W + L L+ G+ C P C C + C
Sbjct: 177 --QKY-WKHINLL-----------LVKLGQNICRPISPKCEVCVLNDMC 211
>gi|389817685|ref|ZP_10208278.1| endonuclease III [Planococcus antarcticus DSM 14505]
gi|388464453|gb|EIM06784.1| endonuclease III [Planococcus antarcticus DSM 14505]
Length = 226
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I+ G+ A+ ++ L+ E G I VP D+ D L+++ G+
Sbjct: 68 VSLEELQQDIRSIGLFRNKAKNIQALSRILIDEQGGI-------VPADR--DLLMTLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R+A RLG + P ++ +++ P +
Sbjct: 119 GRKTANVVVSVAFGIPALAVDTHVERVAKRLGLNRWKDNPLQVEETIMKKTPADD----- 173
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + H+Q+I FG+ C KP C+ CP+ CR
Sbjct: 174 -WSKT-----------HHQIIFFGRYHCKSQKPGCHICPLFDRCR 206
>gi|383319923|ref|YP_005380764.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
gi|379321293|gb|AFD00246.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
Length = 240
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID 477
N+ K + R L L +V++I+ IK N A ++K+F+ +E+G D
Sbjct: 55 NASKAISNLKREGKLSPSTLYECSVEDIAPLIKPARFYNSKAVKIKNFMEFFFKEYGG-D 113
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
L + + LL+++GLG ++V+C+ L F VD RI +R G + P
Sbjct: 114 LAAMSSEDSASLRKKLLAVKGLGKETVDCILLYACGKPVFVVDAYTKRIFLRYGILNGDP 173
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCNA 596
+ +Q + + P LY + H Q++ G C + KP C +
Sbjct: 174 TYDEIQGYFMASLP----------------PNAALYNDYHAQIVHLGSSIC-RPKPLCGS 216
Query: 597 CPM 599
CP+
Sbjct: 217 CPI 219
>gi|317035622|ref|XP_001396714.2| HhH-GPD family base excision DNA repair protein [Aspergillus niger
CBS 513.88]
Length = 472
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG---SIDLEWLRDVPPD 487
S+D++A+R A +K++ EAIK G+ ++ ++++K L+ + E+ + L+ RD P D
Sbjct: 247 SVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQD 306
Query: 488 KAK--------------DYLLSIR------------------GLGLKSVECVRLLTLHHL 515
K + LS+ G+G K+ CV L L
Sbjct: 307 LIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRP 366
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 367 CFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKYSL 410
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H LI G KS P C A
Sbjct: 411 HQLLIRHG-----KSCPRCRA 426
>gi|134082233|emb|CAL00988.1| unnamed protein product [Aspergillus niger]
Length = 475
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG---SIDLEWLRDVPPD 487
S+D++A+R A +K++ EAIK G+ ++ ++++K L+ + E+ + L+ RD P D
Sbjct: 250 SVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQD 309
Query: 488 KAK--------------DYLLSIR------------------GLGLKSVECVRLLTLHHL 515
K + LS+ G+G K+ CV L L
Sbjct: 310 LIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRP 369
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 370 CFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKYSL 413
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H LI G KS P C A
Sbjct: 414 HQLLIRHG-----KSCPRCRA 429
>gi|448716619|ref|ZP_21702549.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
gi|445786833|gb|EMA37595.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
Length = 321
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 37/211 (17%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGLK 502
++E I G+ N +E + D ++ GS + ++ D PD + LL + G+G K
Sbjct: 104 LAETISGAGLYNQKSEVLIDVAEWVLETFGSAEAFDAFVTDEEPDTVRKTLLEVSGVGPK 163
Query: 503 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES--IQKY 559
+ +CV L FPVDT+V RI RLG P + E+++ L E P + +
Sbjct: 164 TADCVLLFAGGRPGVFPVDTHVHRIYRRLGVAPPEADHEAVRAVLEEAVPAAKCGFGPQN 223
Query: 560 LWPRLCKLDQR--------TLYEL--------------------HYQLITFGKVFCTKSK 591
+ R + DQ YE+ H I FG+ +CT K
Sbjct: 224 IAKRYNEGDQSEEEGFHKGGTYEVNGEVVAFAHGGVPPEKCGFGHTATIQFGREYCTARK 283
Query: 592 PNC----NACPMRGECRHFASAFASARLALP 618
P C +CP+ C + + P
Sbjct: 284 PACLDGPESCPLFDLCDRVGVNLETGEVVDP 314
>gi|340975657|gb|EGS22772.1| hypothetical protein CTHT_0012470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 628
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 398 ADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNM 457
AD KN + LRK V +G S+D++ +R + +E++E IK G
Sbjct: 354 ADAAVKNLVQHYGLRK-VGTGAG----------SIDWDKVRLGSHRELAETIKIAGNGPK 402
Query: 458 LAERMKDFLNRLVRE-------------------HGS-----IDLEWLRDVPPDKAKDYL 493
A +K L+ + E HG+ + L+++ + D+A L
Sbjct: 403 KASHIKQILDMVYAENLEHIEAQTVDKGSEPGGKHGTDRQDLLSLDYMHRMTKDEAMAKL 462
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
++ G+G+K+ CV L L F VDT+V + LGWVP P++ H + P
Sbjct: 463 VTYPGVGIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGWVPPNADPDNCFRHGDVMVP 520
>gi|260587425|ref|ZP_05853338.1| endonuclease III [Blautia hansenii DSM 20583]
gi|260542292|gb|EEX22861.1| endonuclease III [Blautia hansenii DSM 20583]
Length = 217
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A A++KE+ + IK G + A+ + R+ + +G +VP ++ +
Sbjct: 60 DMQAFAKADLKELEQDIKPTGFYHNKAKNIIGCAQRICQVYGG-------EVP--RSLED 110
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+S+ G+G K+ +R H + VDT+V RI+ RLG+ + PE ++ L+++ P
Sbjct: 111 LVSLPGVGRKTANVIRGNIFHEPSVVVDTHVKRISKRLGFTKEED-PEKIEQDLMKVLP- 168
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K W LY + Q+ITFG+ C P C C + C+ +
Sbjct: 169 -----KEHW---------ILYNI--QIITFGRQICFARSPKCEECFLTEYCKEY 206
>gi|319790239|ref|YP_004151872.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
gi|317114741|gb|ADU97231.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
Length = 214
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 22/160 (13%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E+ EAI+ GM +++ ++R R E LR++PP++ L + +G K+
Sbjct: 72 ELVEAIRPCGMFKQKERALRELVSRWPRLE-----EKLRELPPEEGIKLLTELPYIGPKT 126
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ FP+DT+ ++ RLG P E + +K+ R
Sbjct: 127 ARVILTFGFGKNTFPIDTHCKKVLSRLGIFPKGWSTEEIS----------RFFEKHFSAR 176
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ ELHY LI G+ C KP C CP+R C
Sbjct: 177 FNR-------ELHYNLIRLGRRVCKARKPECERCPLRNLC 209
>gi|350636184|gb|EHA24544.1| hypothetical protein ASPNIDRAFT_129349 [Aspergillus niger ATCC
1015]
Length = 1031
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG---SIDLEWLRDVPPD 487
S+D++A+R A +K++ EAIK G+ ++ ++++K L+ + E+ + L+ RD P D
Sbjct: 819 SVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQD 878
Query: 488 KAK--------------DYLLSIR------------------GLGLKSVECVRLLTLHHL 515
K + LS+ G+G K+ CV L L
Sbjct: 879 LIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRP 938
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 939 CFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKYSL 982
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H LI G KS P C A
Sbjct: 983 HQLLIRHG-----KSCPRCRA 998
>gi|448358879|ref|ZP_21547553.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
gi|445644559|gb|ELY97572.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
Length = 299
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYL 493
AL A +++E I G+ N +E + + E GS ++ D PD ++ L
Sbjct: 122 ALAHAEQSQLAETISSAGLYNQKSEMLIGAAEWVCDEFGSAAEFDRFVTDEAPDTVRETL 181
Query: 494 LSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L +RG+G K+ +CV L FPVDT+V RI R+G P + E ++ L P
Sbjct: 182 LDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAEADHEEVRAVLEAEVPA 241
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
+ C H I FG+ CT KP C ACPM C
Sbjct: 242 AK----------CGFG-------HTATIQFGRECCTARKPACLEDPEACPMADIC 279
>gi|354603229|ref|ZP_09021228.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
gi|353349106|gb|EHB93372.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
Length = 242
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI---DLEWLRDVPPDKAKD 491
+A+ A+ +EI I+ N A+ + L E G D+E L+ +P
Sbjct: 65 QAMADADPEEIYPYIRSISYPNNKAKNLSGMARMLCEEFGGAVPEDIEQLQRLP------ 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
G+G K+ V ++ A PVDT+V R+A RLG P ++ L E +P
Sbjct: 119 ------GVGRKTANVVGIVAFGKRAMPVDTHVFRVADRLGLSTGAKTPLQTEMQLTEGFP 172
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
P + L H+ LI G+ CT KP+C AC + CR++A+
Sbjct: 173 ----------PEVLPL-------AHHWLILHGRYVCTARKPHCEACGLTPWCRYYATQQK 215
Query: 612 SA 613
+A
Sbjct: 216 TA 217
>gi|160915277|ref|ZP_02077490.1| hypothetical protein EUBDOL_01286 [Eubacterium dolichum DSM 3991]
gi|158433076|gb|EDP11365.1| endonuclease III [Eubacterium dolichum DSM 3991]
Length = 215
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKDYL 493
EA+ A++++I IK G+ A+ ++ LV R H + P KD L
Sbjct: 59 EAMANASLEDIEACIKRIGLYRNKAKSVQALSKALVERFHSEV---------PHAHKD-L 108
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
S+ G+G K+ V+ + A VDT+V RI+ RLG L ++Y +
Sbjct: 109 TSLAGVGRKTANVVQSVCFDIPAIAVDTHVERISKRLG--------------LAKVYDNV 154
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
E+++K L K+ + + H+ I FG+ +CT P+C CP C+
Sbjct: 155 ETVEKKLKR---KIRKERWNKAHHLFIFFGRYYCTAKNPHCEGCPFVSICK 202
>gi|14520880|ref|NP_126355.1| endonuclease III [Pyrococcus abyssi GE5]
gi|5458097|emb|CAB49586.1| nth endonuclease III [Pyrococcus abyssi GE5]
gi|380741424|tpe|CCE70058.1| TPA: endonuclease III [Pyrococcus abyssi GE5]
Length = 222
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 459 AERMKDFLNRL-----------VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
E M++FL L + E I LE + PDK ++ L+ + G+G K V
Sbjct: 74 VEEMQNFLRSLKVGLWRSKGKWIVETSRIILEKYKGRVPDKFEE-LIKLPGIGRKCANIV 132
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
A PVDT+V RI+ RLG P PE ++ L EL P E I
Sbjct: 133 LAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEERLKELIPREEWIY---------- 182
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++ ++ GK C KP C+ CP++ C
Sbjct: 183 -------VNHAMVDHGKSVCRPIKPRCDECPLKELC 211
>gi|376295286|ref|YP_005166516.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
gi|323457847|gb|EGB13712.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
Length = 217
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L+ E L +V ++E I+ G N+ A+R+ +FL + +++ DL L+D + +
Sbjct: 60 LEAEPLHALSVPRLAELIRPAGYYNIKAKRIHNFL-QFLKDEAEFDLLALKDRELAELRP 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR--LGWVPLQPLPESLQLHLLEL 549
+LSI G+G ++ +C+ L L F VD RI R L W E + H
Sbjct: 119 KVLSINGIGPETGDCILLYALDFPTFVVDAYTARILGRHGLAW-------EDIDYH---- 167
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
L+SI P D E H ++ G +C K C+ACP++
Sbjct: 168 --GLQSIFMDALPE----DVALYNEYHALIVRVGANWCRKKAGLCDACPLQ 212
>gi|210623502|ref|ZP_03293847.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
gi|210153560|gb|EEA84566.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
Length = 213
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI E IK G+ A+++K L ++ S +VP + + L+ + G+G K+
Sbjct: 73 EIGEMIKTCGLYKSKAKKIKMTSEILYNDYNS-------EVP--DSLEELIKLPGVGRKT 123
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V H A PVDT+V RI R+G V PE + L+++ P K W +
Sbjct: 124 AGVVLSNAFGHPAIPVDTHVFRIVNRIGIVETST-PEKTEFELMKVLP------KERWSK 176
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+ I G+ C KP C CP++ C +F
Sbjct: 177 A-----------HHLFIFLGRRMCKARKPECTDCPIKKHCNYF 208
>gi|84489308|ref|YP_447540.1| endonuclease III [Methanosphaera stadtmanae DSM 3091]
gi|84372627|gb|ABC56897.1| putative endonuclease III [Methanosphaera stadtmanae DSM 3091]
Length = 219
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A V +I+ +++ G N+ A R+K+ N L+ E+ V PD ++ LL
Sbjct: 69 EEIADAPVDDIANLVRQAGFYNVKAARIKEVSNILLEEYDG--------VVPDTLEE-LL 119
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ CV + A PVD +V RI+ RLG V PE + L E+ P
Sbjct: 120 KLPGVGRKTANCVLVFGFQKDAIPVDVHVHRISNRLGLVHTDK-PEDTEEVLREIVP--- 175
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
Q+Y P ++ ++ FG+ C P CP C+ + S
Sbjct: 176 --QEYWLP------------INDLMVQFGQNICKPINPQHIECPFTDLCQLYKS 215
>gi|389852800|ref|YP_006355034.1| endonuclease III [Pyrococcus sp. ST04]
gi|388250106|gb|AFK22959.1| endonuclease III [Pyrococcus sp. ST04]
Length = 216
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 24/164 (14%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+++E+ E +K G+ + R + E I LE V P+ ++ L+ + G+
Sbjct: 71 ASIEEMQEFLKNLGIG------LWKTKGRWIVESTRIILEKYGGVVPNTLEE-LMKLPGI 123
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K V A PVDT+V R++ RLG VP PE +E I K
Sbjct: 124 GRKCANIVLAYGFGIPAIPVDTHVNRVSKRLGLVPPNATPEK-----------VEEILKK 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L P+ LY +++ ++ GK C KP C+ CP+R C
Sbjct: 173 LLPK-----DEWLY-VNHAMVDHGKAVCRPIKPKCDECPLRDIC 210
>gi|126698144|ref|YP_001087041.1| endonuclease III [Clostridium difficile 630]
gi|260682265|ref|YP_003213550.1| endonuclease iii [Clostridium difficile CD196]
gi|260685864|ref|YP_003216997.1| endonuclease iii [Clostridium difficile R20291]
gi|115249581|emb|CAJ67398.1| Endonuclease III [Clostridium difficile 630]
gi|260208428|emb|CBA60983.1| endonuclease iii [Clostridium difficile CD196]
gi|260211880|emb|CBE02318.1| endonuclease iii [Clostridium difficile R20291]
Length = 201
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 27/166 (16%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
+++EIS+ IK G+ ++++KD +L + +VP K L+ + G+G
Sbjct: 56 SIEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDG-------EVPDSLEK--LIKLPGVG 106
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K
Sbjct: 107 RKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KER 159
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
W H+ LI G+ C P C +CP++ +C ++
Sbjct: 160 WSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 194
>gi|161527564|ref|YP_001581390.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
gi|160338865|gb|ABX11952.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
Length = 218
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 27/173 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +K++ + IK G ++ ++R ++ ID ++ VP D D L+ + G+
Sbjct: 73 AKLKDVEKIIKSIGFYHVKSKR-------IIEVAKIIDSKYKGKVPEDL--DTLVQLPGV 123
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ RLG V + PE + L++
Sbjct: 124 GRKTANCVLVYAFEKPAIPVDIHVHRISNRLGLVETKN-PEETEQELMK----------- 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
K+D++ +++ + +G+ C P C+ C ++ C+ + S AS
Sbjct: 172 ------KVDKKFWIDINDTFVMYGQNICKPISPMCDVCKIKRSCKFYKSKNAS 218
>gi|415726092|ref|ZP_11470593.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
gi|388063965|gb|EIK86533.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
Length = 223
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKD 491
D +L A+V+++ IK G + A+ + RL HG + P K +D
Sbjct: 66 DSHSLSEASVEQVESIIKPLGFYRVKAQHVIALSLRLESAFHGVV---------PSKMED 116
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L S+ G+G K+ VR FPVDT+V R+ RLGW P+ Y
Sbjct: 117 -LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKPKK--------YA 167
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
ESI+K + D L ++LI G+ CT P C CP++ C
Sbjct: 168 NPESIEKEI---TSYFDPADWANLSHRLILHGRKICTARNPKCALCPLKTTC 216
>gi|294508391|ref|YP_003572449.1| endonuclease III [Salinibacter ruber M8]
gi|294344720|emb|CBH25498.1| Endonuclease III [Salinibacter ruber M8]
Length = 386
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLEL 549
D L ++ G+G K+ V + A PVDT+V R+A R+G V P+ ++ L +
Sbjct: 214 DDLETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIGLVKEDATTPKKVEQQLKRV 273
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
P E W E H+ LI G+ CT P+C+ CP+ EC+H+
Sbjct: 274 IPKAE------WG-----------EAHHLLILHGRYTCTARSPDCHDCPIHEECKHYG 314
>gi|392530023|ref|ZP_10277160.1| endonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 214
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA V+ I + IK G+ A ++ +L+ E +VP K + L
Sbjct: 63 EAFLAVPVEAIMDDIKTIGLFRNKARHIQGCCRKLIEEFNG-------EVP--KTRKELT 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G+K+ V A VDT+V R+ RLG L+ ++ L++
Sbjct: 114 SLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLMK------ 167
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
KL + E H++LI FG+ CT P C+ CP+ ECR
Sbjct: 168 -----------KLPESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|341583175|ref|YP_004763667.1| endonuclease III [Thermococcus sp. 4557]
gi|340810833|gb|AEK73990.1| endonuclease III [Thermococcus sp. 4557]
Length = 238
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PD K+ L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 126 PDDIKE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQPEKVEEY 184
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L EL P +K+++ +++ ++ GK C P C+ CP+R C
Sbjct: 185 LAELIPY----EKWIY-------------VNHAMVDHGKSICRPIGPKCDECPLRELC 225
>gi|390938170|ref|YP_006401908.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
gi|390191277|gb|AFL66333.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
Length = 234
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
++A+ L+ + G+G K+ + V L FPVDT++ RI +R+G+ + H+
Sbjct: 125 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYK-----HI 179
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ S + YL +LH LIT G+ C KP CN C +R CR+
Sbjct: 180 SRFWMDNTSPENYL-------------DLHLYLITHGRRTCRARKPLCNKCVLRDMCRYG 226
Query: 607 ASA 609
A
Sbjct: 227 VDA 229
>gi|336264806|ref|XP_003347179.1| hypothetical protein SMAC_05479 [Sordaria macrospora k-hell]
gi|380093873|emb|CCC08838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 560
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 384 DETNPNISKSKKRKADGEKKNAIDWESLRKE--------VQRNSGKQERSRDRMDSLDYE 435
D+ N+++ + G +I+WE + E ++ + +++++ LD
Sbjct: 350 DQAIRNVAQEYGIREHGSGAGSINWEKVATEPQEKLAQAIKVSGNGNQKAKNIKLILDMV 409
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
AL E+++ +E+ +NN E+ F +++L+ + + D+A L+
Sbjct: 410 AL------EMAQMAREKSVNNGGGEQEVAFPE-------TLNLDHMHTLTKDEAMTKLVR 456
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
G+G+KS CV L L F VDT+V R LGWVP + PE H
Sbjct: 457 YPGIGIKSAACVTLFCLRKPCFGVDTHVHRFCRWLGWVPEKANPEDCFRH 506
>gi|239947055|ref|ZP_04698808.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921331|gb|EER21355.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
Length = 212
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P+ K+ L+ + G+G K+ V VDT+V R+A R+G+ PE ++
Sbjct: 105 PNDFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIGFAKGNS-PEIVEKE 162
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LL++ +D++ L HY LI G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------IDEKWLTHAHYWLILHGRYICKARKPDCDICPIKEYCEY 205
Query: 606 FASAFAS 612
+ +AF+S
Sbjct: 206 YINAFSS 212
>gi|146304857|ref|YP_001192173.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
gi|145703107|gb|ABP96249.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
Length = 230
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 27/205 (13%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
+ + K D+ + E L A+ + I I++ G++N + +K+ +++ E+G
Sbjct: 51 KGAKKAYEELDKEVGITAEGLSRADPEVIKRCIRKVGLHNNKTKVIKEVSTKILNEYGG- 109
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
D+ + D+ KA++ L+ + G+G K+ + + + + FP+DT++ RI+ RLG
Sbjct: 110 DINKVLDLGLPKAREKLVELPGVGKKTADVLLITCRDYPVFPIDTHIFRISKRLG----- 164
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
+ Y + S + ++ H LIT G+ C KP C+
Sbjct: 165 ---------IDGNYDKVSSFWR-------EVSDNLRLRAHLLLITHGRATCKAIKPKCDT 208
Query: 597 CPMRGECRHFASAFASARLALPGPE 621
C + C ++A S GPE
Sbjct: 209 CVLNDCCEYYARLRGSQ-----GPE 228
>gi|425736476|ref|ZP_18854780.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
gi|425478146|gb|EKU45347.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
Length = 245
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL AN+ E+ E I+ G A + N LV ++ +VP + +
Sbjct: 77 DAHALAVANLGEVEELIRSTGFYRAKARNIVKLANDLVDDYDG-------EVP--RTMEE 127
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT++GR+A R GW + P + + L+P
Sbjct: 128 LVKLAGVGRKTANVVLGNAFDTPGITVDTHMGRLARRFGWTT-ETDPVKAEEDIAALFPT 186
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E L L +++I G+ C KP C ACP+ C F
Sbjct: 187 KE-----------------LTLLSHRVIFHGRRICHSRKPACGACPLMALCPSFG 224
>gi|212224145|ref|YP_002307381.1| endonuclease III [Thermococcus onnurineus NA1]
gi|212009102|gb|ACJ16484.1| endonuclease III [Thermococcus onnurineus NA1]
Length = 243
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMN--NMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
D E + ++E+ +KE G+ E + +++E+G VP D +
Sbjct: 79 DIETIARTPIEEMQTFLKENGVGLWKTKGEWIVKASQIILKEYGG-------KVPDDIHE 131
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +L EL
Sbjct: 132 --LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQPERVEDYLRELI 189
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P +K+++ +++ ++ GK C KP C+ CP+R C
Sbjct: 190 PR----EKWIY-------------VNHAMVDHGKTICRPIKPRCDECPLRELC 225
>gi|452976633|gb|EME76448.1| endonuclease III [Bacillus sonorensis L12]
Length = 220
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ L+ E+G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLCKMLIEEYGG-------EVPRDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ + ++ L++ P E W
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWKDSVTEVEKTLMKKIPESE------W 174
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALP 618
H++LI FG+ C +P C CP+ CR + + LP
Sbjct: 175 S-----------ATHHRLIFFGRYHCKAQRPKCEECPLFSLCREGQKRYKKGLVKLP 220
>gi|448488148|ref|ZP_21607078.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
gi|445696410|gb|ELZ48499.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
Length = 233
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVP 485
DR D D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L +P
Sbjct: 69 DRYD--DFAAVEAADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMP 126
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D+AK +L I+G+G K+ V VDT+V R++ R G VP E
Sbjct: 127 TDEAKGWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNE----- 181
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ VL+ ++ Y LH LI G+ C+ +C+
Sbjct: 182 --RAHEVLDG----------RIPDELTYPLHVLLIRHGRERCSARGADCD 219
>gi|320105404|ref|YP_004180994.1| iron-sulfur cluster loop [Terriglobus saanensis SP1PR4]
gi|319923925|gb|ADV81000.1| iron-sulfur cluster loop [Terriglobus saanensis SP1PR4]
Length = 258
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
++ LR A V EI E+I + A ++K L + R G + L+ L +K + +L
Sbjct: 84 WDKLRDAPVAEIEESIALATFPDRKAPQLKQTLEEITRRVGKLSLDSLATYKTEKIRAWL 143
Query: 494 LSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
G+G+K S V LH A +D++ RIA+RLG P +++ L+ + P
Sbjct: 144 EQFPGVGVKTSGAVVNFSWLHRKAICIDSHHQRIAIRLGLAPKGADARAVEEQLMAIAPE 203
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITF-GKVFCTKSKPNCNACPMRGEC 603
+ + ++D+ H+ L+ G+ CT +P C+ C +R C
Sbjct: 204 EWTAE--------QMDE------HHSLVKLHGQERCTFREPRCSRCALREVC 241
>gi|453088940|gb|EMF16980.1| DNA glycosylase [Mycosphaerella populorum SO2202]
Length = 489
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--------------- 475
S+D+ A+R A +++ +AI+ G+ N+ ++ +K+ L + E+
Sbjct: 228 SVDWNAVRLAPQQDVFKAIERGGLANVKSKDIKNILQMVYEENQERRAALLTSNDNASES 287
Query: 476 --------------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
I L+ L + + A D L++ G+G K+ CV L L
Sbjct: 288 QSAPESSTQTEEITKADQDVISLDHLHLMSTNDAIDKLITYPGIGPKTASCVALFCLQRP 347
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
+F VDT+V R+ LGWVP ++ Y ++ K+ Y+L
Sbjct: 348 SFAVDTHVFRLVQYLGWVPKSTKKGQPKVDRNTTYSHCDA----------KIPDEYKYKL 397
Query: 576 HYQLITFGKVFCTKSKPNCNAC 597
HY LI GK C P C A
Sbjct: 398 HYLLIKHGKT-C----PRCRAA 414
>gi|157364361|ref|YP_001471128.1| endonuclease III [Thermotoga lettingae TMO]
gi|157314965|gb|ABV34064.1| endonuclease III [Thermotoga lettingae TMO]
Length = 217
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +L A +I + IK GM AER + + I +E P D
Sbjct: 60 DVYSLSMAKPSQIYDLIKASGMYRQKAER--------IIKVSQIIVEKFNGKIPANLHD- 110
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LLS+ G+G K+ V A VDT+V RI+ RLG+V + PE + L ++ P
Sbjct: 111 LLSLPGVGRKTANIVLYHCFCQPALAVDTHVHRISNRLGFVKTK-TPEQTEEGLKKIIP- 168
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+K+ P ++ ++ FGK C KP C CP+ C +F S
Sbjct: 169 ----EKFWGP------------INGAMVEFGKKVCLPRKPKCQECPVNKYCEYFNS 208
>gi|83816451|ref|YP_446456.1| endonuclease III [Salinibacter ruber DSM 13855]
gi|83757845|gb|ABC45958.1| endonuclease III [Salinibacter ruber DSM 13855]
Length = 324
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLEL 549
D L ++ G+G K+ V + A PVDT+V R+A R+G V P+ ++ L +
Sbjct: 152 DDLETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIGLVKEDATTPKKVEQQLKRV 211
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P E W E H+ LI G+ CT P+C+ CP+ EC+H+
Sbjct: 212 IPKAE------WG-----------EAHHLLILHGRYTCTARSPDCHDCPIHEECKHY 251
>gi|429858184|gb|ELA33014.1| base excision dna repair protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 309
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 447 EAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVEC 506
EAIK G++ + ++ + LN++ ++G L+ L + A L+S +G+G K+ C
Sbjct: 183 EAIKCGGLSAVKSKVIISILNQVKEKYGKYSLDHLFSASNEDAMQELISFQGVGPKTASC 242
Query: 507 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
V L L +F VDT+V RI LGW P + HL
Sbjct: 243 VLLFCLQRESFAVDTHVWRITGLLGWRPKSASRDETHAHL 282
>gi|320335030|ref|YP_004171741.1| endonuclease III [Deinococcus maricopensis DSM 21211]
gi|319756319|gb|ADV68076.1| endonuclease III [Deinococcus maricopensis DSM 21211]
Length = 224
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A V+++ I+ G+ A + LV HG DVP D D
Sbjct: 72 DAFALAAARVEDVEGFIRTIGLYRNKARNLVALAGLLVERHGG-------DVPNDF--DA 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
++++ G G K+ V A VDT+VGR+A RLG+ + P+ +++ L L+P
Sbjct: 123 VVALPGAGRKTANVVLSNAFGFPAIAVDTHVGRLARRLGFTA-ETNPDKVEVQLQRLFPR 181
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++++ LH+ LI G+ C +P C+AC + C
Sbjct: 182 ----EQWVF-------------LHHALILHGRRVCLARRPVCSACALAAVC 215
>gi|217967235|ref|YP_002352741.1| HhH-GPD family protein [Dictyoglomus turgidum DSM 6724]
gi|217336334|gb|ACK42127.1| HhH-GPD family protein [Dictyoglomus turgidum DSM 6724]
Length = 223
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGS 475
RN K R+ + LD L N +++S IK G + A+R+K+F+N V+E HG
Sbjct: 42 RNVEKAIRNLKEENLLDPFKLYSLNEEKLSVLIKPVGFYKIKAQRLKNFINYFVKEYHG- 100
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
DL + P + ++ LL I+GLG ++V+ + L + F +D RI LG
Sbjct: 101 -DLLAMNRNPTRELREELLKIKGLGKETVDSILLYVFNRPVFVIDNYTKRIFSCLGIGSF 159
Query: 536 Q-PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
P + ++ L+P+ + Q+Y H ++ GK C K +C
Sbjct: 160 DLPYEDWQKIFHNSLFPIYQLFQEY----------------HALIVEHGKRSCKKCPNHC 203
>gi|159041229|ref|YP_001540481.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
gi|157920064|gb|ABW01491.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
Length = 233
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 467 NRLVREHGSI----DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 522
+RLVR +I L L + D+ + LLS+ G+G ++ + + L L+ + P+ T
Sbjct: 99 SRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTY 158
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYE---LHYQL 579
R+ R+ + L E +L L++L P R LYE H +
Sbjct: 159 TIRVIKRI-YGYLGGGYEDWRLTLMKLLP------------------RGLYEYKLFHAGV 199
Query: 580 ITFGKVFCTKSKPNCNACPMRGECRH 605
+T GK +C K P C CP+R +CR
Sbjct: 200 VTTGKEWCLKETPRCIECPLRNQCRF 225
>gi|319790406|ref|YP_004152039.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
gi|317114908|gb|ADU97398.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
Length = 221
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID 477
N+ + + + + L EAL + E+ IK G A +K+ +VRE G
Sbjct: 45 NASRAVGNLKKANLLTPEALSSTDEGELQNLIKPAGFFRQKARYLKELSRFVVREGG--- 101
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
+E L+ P + LL+++G+G ++ + + L L +F VD R+ RLG + +
Sbjct: 102 IEGLKAQPLKVLRPKLLNVKGIGPETADSILLYALDKPSFVVDKYTKRLLYRLGVLEGES 161
Query: 538 LPESLQLHLL--ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+ + L+ E+ P E +++Y ELH ++ K +C K++PNC
Sbjct: 162 VSYNRVKTLVEGEIPPTEEHLKEY-------------KELHALIVELCKRYC-KTRPNCR 207
Query: 596 ACPMRGEC 603
CP+R C
Sbjct: 208 ECPLRELC 215
>gi|332157727|ref|YP_004423006.1| endonuclease III [Pyrococcus sp. NA2]
gi|331033190|gb|AEC51002.1| endonuclease III [Pyrococcus sp. NA2]
Length = 220
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 452 RGMNNMLAERMKDFLNRL-----------VREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
R + N + M++FL L + E I LE PDK D LL + G+G
Sbjct: 67 RDIANASIDEMREFLRSLKVGLWKNKGKWIVEVSRILLEKYDGKVPDKF-DELLKLPGIG 125
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K V A PVDT+V RI+ RLG P PE ++ L L P E I
Sbjct: 126 RKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEERLKSLIPREEWIY--- 182
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++ ++ GK C +P CN CP+R C
Sbjct: 183 --------------VNHAMVDHGKRICRPVEPRCNECPLRDLC 211
>gi|414083690|ref|YP_006992398.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997274|emb|CCO11083.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 214
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA V+ I + IK G+ A ++ +L+ E +VP K + L
Sbjct: 63 EAFLAVPVEAIMDDIKTIGLFRNKARHIQGCCRKLIDEFNG-------EVP--KTRKELT 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G+K+ V A VDT+V R+ RLG L+ ++ L++
Sbjct: 114 SLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLMK------ 167
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
KL + E H++LI FG+ CT P C+ CP+ ECR
Sbjct: 168 -----------KLPESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|147920603|ref|YP_685600.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110620996|emb|CAJ36274.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 307
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 28/185 (15%)
Query: 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNR-----LVREHGSIDL 478
R + +D + A+ KE+ E I+ G DF+ R + R GS L
Sbjct: 130 RLQHHYKGIDVYKMASADKKELEELIRTSGPYK------ADFIIRCSQEIIDRWGGS--L 181
Query: 479 EWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 538
EW+R P +A++ L+S+ G+G K+ +CV L L H VDT++ R++ R G
Sbjct: 182 EWMRTAPTQEAREALMSLYGVGPKTADCVLLFALGHSVVAVDTHICRVSERTGLSLATGD 241
Query: 539 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACP 598
E+ + + E + +K+ P + H +I G+ FC P + CP
Sbjct: 242 SEAAKRRVKE-----DLERKHRIPGMA----------HLLIINLGRDFCKAVLPLHHECP 286
Query: 599 MRGEC 603
+ C
Sbjct: 287 VEDIC 291
>gi|283768320|ref|ZP_06341232.1| endonuclease III [Bulleidia extructa W1219]
gi|283104712|gb|EFC06084.1| endonuclease III [Bulleidia extructa W1219]
Length = 213
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKD 491
+ E+L A +E+ I G+ A + F +V R HG I P +D
Sbjct: 60 NLESLANAKAREVESYIARLGLYRAKAANIIGFAKGVVDRFHGEI---------PSSMED 110
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L S+ G+G K ++ H + VDT+V RIA RLG V + E ++ L + P
Sbjct: 111 -LTSLPGVGRKCANVIQGECFHLPSLAVDTHVSRIAKRLGLVYQKDSVEVIERKLKKKLP 169
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W + H+Q+I FG+ C KP C CP C
Sbjct: 170 ------KERWTKA-----------HHQMIFFGRYLCQARKPQCYRCPFVEHC 204
>gi|432328581|ref|YP_007246725.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135290|gb|AGB04559.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 209
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +L+ A V EI+ I G A ++K+ + R+ ID E+ VP + D
Sbjct: 57 DPSSLKNAPVDEIARLIYPAGFYKQKARKIKE-IARI------IDEEYDGVVP--RTLDE 107
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G K+ V VD +V RI+ RLGWV + PE + L+++ P
Sbjct: 108 LLKLPGVGRKTANIVLSRCFDQDVIAVDVHVHRISNRLGWVSTRT-PEETERELMKILP- 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+KY W R + EL L+ FG+ C P C+ CP+ C +F
Sbjct: 166 ----KKY-W--------REINEL---LVMFGRTICRPVGPKCDECPVSDFCDYF 203
>gi|390961830|ref|YP_006425664.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
gi|390520138|gb|AFL95870.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
Length = 238
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E + V+E+ ++ERG+ L + +++ + R I LE PD +
Sbjct: 79 DIETIANTPVEEMQRFLRERGVG--LWKTKGEWIVKASR----IILEEYGGKVPDDIHE- 131
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +L EL P
Sbjct: 132 LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVPPEKVEEYLRELIPR 191
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +++ ++ GK C +P C CP++ C
Sbjct: 192 ----EKWIY-------------VNHAMVDHGKNICNPIRPKCGECPLKELC 225
>gi|435848105|ref|YP_007310355.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
gi|433674373|gb|AGB38565.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
Length = 270
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDL--EWLRDVPPDKAKDYLLSIRGLGL 501
E++E I G+ N +E + ++ E S +++R+ P+ ++ LL I G+G
Sbjct: 101 ELAETISSAGLYNQKSEMIIGAAEEILAEFESAAGFDDFVREAAPEGVRERLLEIHGVGP 160
Query: 502 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ +CV L FPVDT+V RI RLG P E ++ L P +
Sbjct: 161 KTADCVLLFAGGRGGVFPVDTHVHRIYRRLGVAPPDADHEDVRAVLEREVPAAK------ 214
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMRGEC 603
C H I FG+ +CT KP C +ACPM C
Sbjct: 215 ----CGFG-------HTASIQFGREYCTARKPACLEDPDACPMGDVC 250
>gi|313886400|ref|ZP_07820122.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
gi|312924146|gb|EFR34933.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
Length = 219
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A+V ++ + N A+ + R+ ++H I VP ++ L
Sbjct: 63 EAMARASVDDLLAFMGSVSYPNNKAKHLIGLSERITQKHHGI-------VP--STREELE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLELYPVL 553
++ G+G KS + + A PVDT+V R+A R+G + P +++ L++ P
Sbjct: 114 ALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVKRIP-- 171
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
Q L H+QLI G+ C KP C C + CRH+A+A
Sbjct: 172 ---------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYATA 212
>gi|116511912|ref|YP_809128.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Lactococcus lactis subsp. cremoris SK11]
gi|385838143|ref|YP_005875773.1| Endonuclease III [Lactococcus lactis subsp. cremoris A76]
gi|116107566|gb|ABJ72706.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris SK11]
gi|358749371|gb|AEU40350.1| Endonuclease III [Lactococcus lactis subsp. cremoris A76]
Length = 218
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+EI I+ G+ A+ + LV + G I L D+P DK
Sbjct: 61 DAQTMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLVADFGGI----LPDLPKDK--KL 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL V + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVAQKATVLEVEEKLMKLIPE 174
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +Q H+ LI FG+ CT KP C CP+ C+
Sbjct: 175 DKWVQS-----------------HHHLIFFGRYHCTAKKPKCAGCPVLDYCK 209
>gi|228476057|ref|ZP_04060765.1| endonuclease III [Staphylococcus hominis SK119]
gi|228269880|gb|EEK11360.1| endonuclease III [Staphylococcus hominis SK119]
Length = 223
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ IK G+ A+ +K L+ ++G P KD L S+ G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG--------QVPHTHKD-LESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 219
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
RN K + D L A+ + E++E I+ G N+ A R+++FLN L E G
Sbjct: 45 RNVEKAIANLKARDLLSARAMHALDTGELAELIRPAGYYNIKAARLRNFLNFLNDEAG-F 103
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
++E L+ D+ + +LSI G+G ++ + + L L F VD R+ R G
Sbjct: 104 EIESLKTQGMDELRSKVLSINGVGPETADSILLYALEMPTFVVDAYTYRMMDRHGLA--- 160
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCN 595
E + H L SI P + +LY E H ++ GK +C K C
Sbjct: 161 --HEGIDYH------GLRSIFMDALP-----EDVSLYNEFHALIVRVGKDWCRKKAGLCA 207
Query: 596 ACPMR 600
CP++
Sbjct: 208 TCPLQ 212
>gi|418620110|ref|ZP_13182921.1| endonuclease III [Staphylococcus hominis VCU122]
gi|374823673|gb|EHR87668.1| endonuclease III [Staphylococcus hominis VCU122]
Length = 223
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ IK G+ A+ +K L+ ++G P KD L S+ G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG--------QVPHTHKD-LESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|71027073|ref|XP_763180.1| endonuclease III [Theileria parva strain Muguga]
gi|68350133|gb|EAN30897.1| endonuclease III, putative [Theileria parva]
Length = 418
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
Query: 421 KQERSRDRMDSLDYEALRCANV-----KEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
K E + M +L L N+ +E+ I + G + A+ +K L ++G
Sbjct: 246 KDEITALTMKNLKKRGLTLDNILKMDEEELDSIISKVGFHKTKAKNIKKAAQILKDQYGG 305
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVP 534
VP +K KD L S+ G+G K + + + + VD +V RI RLGWV
Sbjct: 306 -------KVPSNK-KD-LESLPGIGPKMANLILQVAFNMVDGVAVDIHVHRITNRLGWVK 356
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
+ PE L L EL P K LW ++ L L+ FG+ FCT + P C
Sbjct: 357 TKT-PEETSLKLQELLP------KDLWSKINPL-----------LVGFGQTFCTAAGPGC 398
Query: 595 NACPMRGEC 603
CP+ C
Sbjct: 399 PTCPVNKWC 407
>gi|314936413|ref|ZP_07843760.1| endonuclease III [Staphylococcus hominis subsp. hominis C80]
gi|313655032|gb|EFS18777.1| endonuclease III [Staphylococcus hominis subsp. hominis C80]
Length = 223
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ IK G+ A+ +K L+ ++G P KD L S+ G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG--------QVPHTHKD-LESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|403223295|dbj|BAM41426.1| endonuclease III [Theileria orientalis strain Shintoku]
Length = 426
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L E + V E+ I + G + ++ +K L ++G VP +K KD
Sbjct: 268 LTLENMLKMEVSELDSLISKVGFHATKSKNIKKVAEILKEKYGG-------KVPSNK-KD 319
Query: 492 YLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
L S+ G+G K ++ + + + VD +V RI RLGWV + PE ++ L EL
Sbjct: 320 -LESLPGIGPKMANLIQQIAFNIVDGIAVDLHVHRITNRLGWVKTKT-PEETRVKLEELL 377
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P K LW E++ L+ FG+ FCT + P C CP+ C
Sbjct: 378 P------KSLWS-----------EVNPLLVGFGQTFCTAAGPGCPTCPVNKWC 413
>gi|167044454|gb|ABZ09130.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_APKG6D9]
Length = 216
Score = 57.0 bits (136), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A VK++ + IK G ++ ++R ++ I+ ++ VP + D L+ + G+
Sbjct: 71 AKVKDVEKIIKSIGFFHVKSKR-------IIEVAKIINTKYKGKVPDNL--DTLVELPGV 121
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ RLG V + PE + L++ P +KY
Sbjct: 122 GRKTANCVLVYAFEKPAIPVDIHVHRISNRLGLVDTKN-PEETEQELMKKIP-----KKY 175
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
W +++ + +G+ C P C+ C ++ C+++ + +AS
Sbjct: 176 -W-----------IDINDTFVMYGQNICKPISPMCDVCKIKKNCKYYKTKYAS 216
>gi|320451065|ref|YP_004203161.1| endonuclease III [Thermus scotoductus SA-01]
gi|320151234|gb|ADW22612.1| endonuclease III [Thermus scotoductus SA-01]
Length = 217
Score = 57.0 bits (136), Expect = 4e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I+ G+ A+ + RLV EHG +VP DK
Sbjct: 69 DPQALAKATPEEVEPYIRRIGLYRTKAKNLVALARRLVEEHGG-------EVPRDKKA-- 119
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + L PE + L L+P
Sbjct: 120 LMKLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRL-CLSLAKAPERIGAELEALFPK 178
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + +H+ L+ G+ C KP C AC + C
Sbjct: 179 EEWVF-----------------VHHALVLHGRYVCLARKPRCGACSLAPHC 212
>gi|303324187|ref|XP_003072081.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111791|gb|EER29936.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320037075|gb|EFW19013.1| helix-hairpin-helix domain-containing protein [Coccidioides
posadasii str. Silveira]
Length = 444
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN-----RLVREHGSID-------- 477
S+++ +R A V+EI +AIK G+ + ++ +K+ L + R +D
Sbjct: 238 SVNWNKVREATVQEIRDAIKSGGLADTKSKHIKEILTMVYEQNIARRKDLVDAKQGGDET 297
Query: 478 ----------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
L+ + + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 298 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 357
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
LGWVP + + E LE+ ++ Y LH I GK
Sbjct: 358 KWLGWVPPEKVNEITAFRHLEV----------------RVPDHLKYSLHQLFIFHGK 398
>gi|225848427|ref|YP_002728590.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644019|gb|ACN99069.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Sulfurihydrogenibium azorense Az-Fu1]
Length = 216
Score = 57.0 bits (136), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 37/190 (19%)
Query: 424 RSRDRMDSLDYEAL-RCANVKEISEAIKERGMNNMLAERMKDFL---------NRLVREH 473
R++D++ +L + L + A+ E M N+ AE ++ + + ++E
Sbjct: 47 RTKDQITALASDRLFKVADTPE--------KMVNLPAEEIEKLIYPVGFYKNKAKTIKEI 98
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
I LE PD +D LLS++G+G K+ V A VD +V RI+ RLG V
Sbjct: 99 SKIILEKYAGKVPDNLED-LLSLKGVGRKTANLVLSEGYKKPAICVDVHVHRISNRLGVV 157
Query: 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
+ PE + L+E+ P +KY W ++++ L+ FG+ C KP
Sbjct: 158 KTKT-PEETEFKLMEILP-----KKY-W-----------RDVNWVLVAFGQTICKPIKPM 199
Query: 594 CNACPMRGEC 603
C+ CP++ C
Sbjct: 200 CDICPVKNFC 209
>gi|357054857|ref|ZP_09115936.1| endonuclease III [Clostridium clostridioforme 2_1_49FAA]
gi|355383794|gb|EHG30869.1| endonuclease III [Clostridium clostridioforme 2_1_49FAA]
Length = 231
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
+ D+L+ A+ A++KE+ + I G +M A+ + LV G +VP
Sbjct: 80 KYDTLEKFAM--ADLKELEQDIHSIGFYHMKAKNIIACCRDLVERFGG-------EVP-- 128
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
K+ D L S+ G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+
Sbjct: 129 KSIDELTSLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYALM 187
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ P D L+ +H +IT G+ C +P C C +R EC
Sbjct: 188 KVLPK---------------DHWILWNIH--IITLGRTICVARRPKCCECFLREEC 226
>gi|355640219|ref|ZP_09051638.1| endonuclease III [Pseudomonas sp. 2_1_26]
gi|354831431|gb|EHF15446.1| endonuclease III [Pseudomonas sp. 2_1_26]
Length = 212
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HG PD +D L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|415728037|ref|ZP_11471640.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
6119V5]
gi|388065563|gb|EIK88045.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
6119V5]
Length = 223
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKD 491
D +L A+V+++ IK G + A+ + RL HG + P + +D
Sbjct: 66 DSHSLSEASVEQVESIIKPLGFYRVKAQHIIALSLRLESAFHGVV---------PSRMED 116
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L S+ G+G K+ VR FPVDT+V R+ RLGW P+ Y
Sbjct: 117 -LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKPKK--------YA 167
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
ESI+K + D L ++LI G+ CT P C CP++ C
Sbjct: 168 NPESIEKEI---TSYFDPADWTNLSHRLILHGRKVCTARNPKCALCPLKTTC 216
>gi|288556139|ref|YP_003428074.1| endonuclease III [Bacillus pseudofirmus OF4]
gi|288547299|gb|ADC51182.1| endonuclease III [Bacillus pseudofirmus OF4]
Length = 218
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A A ++E+ E I+ G+ A+ +K LV ++ +VP D+ D
Sbjct: 64 DYIA---APLEELEEDIRRIGLFRSKAKNIKKLSQSLVEQYNG-------EVPKDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + ++ L++ P+
Sbjct: 112 LVKLAGVGRKTANVVTSVAFGVPAIAVDTHVERVSKRLGICRWKDNVNVVEQTLMKKIPI 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LW + H++LI FG+ C P C CP+ CR
Sbjct: 172 ------ELWS-----------DSHHRLIFFGRYHCKAQSPKCETCPLLDRCR 206
>gi|407465823|ref|YP_006776705.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
gi|407049011|gb|AFS83763.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
Length = 216
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +K++ + IK G ++ ++R ++ ID ++ VP + + L+ + G+
Sbjct: 71 AKIKDVEKIIKSIGFFHVKSKR-------IIEVAKIIDKKYKGKVPDNL--ETLVELPGV 121
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ RLG V + E+ Q +++ IQK
Sbjct: 122 GRKTANCVLVYAFEKPAIPVDIHVHRISNRLGLVDTKNPEETEQ-------ELMKKIQKK 174
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
W +++ + +G+ C P CN C ++ C+ + S AS
Sbjct: 175 YW-----------IDINDTFVMYGQNICKPISPMCNVCKIKKSCKFYKSKNAS 216
>gi|49078760|gb|AAT49817.1| PA3495, partial [synthetic construct]
Length = 213
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HG PD +D L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|293400780|ref|ZP_06644925.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305806|gb|EFE47050.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 215
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH--GSIDLEWLRDVPPDKAKDY 492
EAL AN KE+ I+ G+ A ++ LV EH G + P K+
Sbjct: 59 EALASANSKEVEAKIRRIGLYRNKARSIQALSASLV-EHFDGQV---------PQSMKE- 107
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ VR + A VDT+V RIA RLG + E ++ L
Sbjct: 108 LTSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKVGDSVEVVEQKLKR---- 163
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
I++ W R H+ I FG+ CT P C+ CP C+
Sbjct: 164 --KIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|342732970|ref|YP_004771809.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384456337|ref|YP_005668934.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417967782|ref|ZP_12608847.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|418015623|ref|ZP_12655188.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418373221|ref|ZP_12965312.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330425|dbj|BAK57067.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505958|gb|EGX28252.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984682|dbj|BAK80358.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380340820|gb|EIA29370.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|380341610|gb|EIA30084.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 209
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
KE+ + IK G+ M ++ + + L R++ E + +VP + +D L+++ G+G K
Sbjct: 69 KELQDKIKSIGLYRMKSKNIIN-LCRILEER------FDSEVP--RTRDELITLPGVGRK 119
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V AF VD +V R++ R+G + P PE +L L++ +I + LW
Sbjct: 120 TANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMK------NIDENLWT 172
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+C H+ +I G+ CT KPNC C + C+++
Sbjct: 173 -IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
Length = 657
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 11/179 (6%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
+E L A +E+ + G+ + L LV GS L + +++L
Sbjct: 88 WEELLRAPEREVEAIVHRGGLGKRKTASLVGALQALVDRFGSCTLRPALQWKDEALEEFL 147
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
S+ + KS C+ + ++ FPVDT+VGR+ RLG L L+ +
Sbjct: 148 CSLPEISRKSAYCIMMYSMGRSVFPVDTHVGRVLQRLGIYK----GTGFSLEGLDHKQLQ 203
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
++ + P L + LH L+ G+ C P C+AC +R C H+ AS
Sbjct: 204 RTLADVVPPNLRR-------SLHINLVLHGREVCKAVAPACDACELRQLCSHYRDHEAS 255
>gi|417960104|ref|ZP_12602758.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
gi|380331776|gb|EIA22753.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
Length = 209
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
KE+ + IK G+ M ++ + + L R++ E + +VP + +D L+++ G+G K
Sbjct: 69 KELKDKIKSIGLYRMKSKNIIN-LCRILEER------FDSEVP--RTRDELITLPGVGRK 119
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V AF VD +V R++ R+G + P PE +L L++ +I + LW
Sbjct: 120 TANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMK------NIDENLWT 172
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+C H+ +I G+ CT KPNC C + C+++
Sbjct: 173 -IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|119719059|ref|YP_919554.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
gi|119524179|gb|ABL77551.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
Length = 236
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 20/196 (10%)
Query: 416 QRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS 475
+ N+ K S + ++ E +R A + E++EAI+ G+ A+ +K + L ++G
Sbjct: 58 ENNTLKAFASLEERVGVECEKIRKAGLSELAEAIRPAGLQEQKAKAIKQVASLLYEKYGC 117
Query: 476 IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
D+ L ++ L I G+G K+++ V L + P+DT+V R++VRLG
Sbjct: 118 -DIGKLLSRGVEEVIRELKQIEGIGDKTID-VLLANYGYPVLPIDTHVRRVSVRLGLAR- 174
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
P S Y ++ + +LD H LI G+ C P C+
Sbjct: 175 ---PGS--------YRAMQKSLHGFFREEARLDA------HLYLIKLGRTLCRAKNPLCD 217
Query: 596 ACPMRGECRHFASAFA 611
CP+ C ++ ++ A
Sbjct: 218 ECPLSDLCCYYRTSRA 233
>gi|406861525|gb|EKD14579.1| base excision DNA repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 607
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 400 GEKKNAIDWE-------SLRKEVQRNSGKQERSRD---RMDSLDYE--ALRCANV---KE 444
G +IDW+ SL E + G QE+ D R S+ YE +R + + KE
Sbjct: 223 GAGAGSIDWDRVYRAERSLVVEATKRGGSQEKKTDEIQRTMSMIYENNCIRYSALLRQKE 282
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
E RG+ +E + + + +E + + ++ + + A + L+ G+G+K+
Sbjct: 283 TGEPCTFRGLKPESSEEIDAEIMKFEKE--PLTMHYVFQMTDEDAMEELIQYYGVGVKTA 340
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
CV L L +F VDT+V R LGWVP +
Sbjct: 341 SCVMLFCLQRNSFAVDTHVHRFCRWLGWVPFR 372
>gi|167754535|ref|ZP_02426662.1| hypothetical protein CLORAM_00037 [Clostridium ramosum DSM 1402]
gi|237733826|ref|ZP_04564307.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705367|gb|EDS19946.1| endonuclease III [Clostridium ramosum DSM 1402]
gi|229383164|gb|EEO33255.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 220
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A++ E+ + IK G+ A+ + + L+ + I VP D+ + L
Sbjct: 69 EAVSQASLPELEQDIKTIGLYRNKAKNLLALSHVLIEQFDGI-------VPSDQKQ--LE 119
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 120 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKRDDNVLTVEKKLCR------ 173
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
SI + W + H+Q I FG+ FC + P+C C + C+
Sbjct: 174 SIPRNRWNKS-----------HHQFIFFGRYFCKATNPSCTECKLFDMCK 212
>gi|408420792|ref|YP_006762206.1| endonuclease III Nth [Desulfobacula toluolica Tol2]
gi|405108005|emb|CCK81502.1| Nth: endonuclease III [Desulfobacula toluolica Tol2]
Length = 210
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D EAL A++ I + I G N A+ +K ++ H + VP D +K
Sbjct: 62 DPEALSHASLDNIKKIIYSTGFYNNKAKNIKACAKAILERHEGM-------VPEDISK-- 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V H A VDT+V RI+ RLG + P ++ L+++ P
Sbjct: 113 LVNLPGVGRKTANVVLSAAFGHQAIVVDTHVLRISKRLGLTD-KTDPVKVEHELMQIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +L QLI FG+ C KP C CP+ C
Sbjct: 171 -----KVSWS-----------DLSLQLIYFGREICDAKKPLCQDCPLFKIC 205
>gi|284161459|ref|YP_003400082.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
gi|284011456|gb|ADB57409.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
Length = 211
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
+I E IK G + A+ +K LV +G PD ++ LL + G+G K
Sbjct: 71 DIDELIKPVGFHRTKAKNLKKLAEVLVNNYGG--------KVPDNLEE-LLKLPGVGRKV 121
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V L L A VDT+V RIA RLG V + PE + L ++ P K LW R
Sbjct: 122 ANIV-LAHLGKPAIAVDTHVHRIANRLGVVRTKR-PEETEKELKKIVP------KDLWSR 173
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
L K + FG+ C KP C CP + C +F
Sbjct: 174 LNK-----------AFVGFGQTVCKPLKPLCEECPFKSFCEYF 205
>gi|223477172|ref|YP_002581604.1| Endonuclease III [Thermococcus sp. AM4]
gi|214032398|gb|EEB73228.1| Endonuclease III [Thermococcus sp. AM4]
Length = 239
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E + V E+ E +++RG+ L + +++ + R I LE PD +
Sbjct: 71 DIETIANTPVDEMREFLRKRGVG--LWKTKGEWIVKASR----IILEKYNGKVPDDINE- 123
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +L EL P
Sbjct: 124 LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVPPEKVEEYLRELIPK 183
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +++ ++ G+ C +P C +CP++ C
Sbjct: 184 ----EKWIY-------------VNHAMVDHGRSICKPIRPKCESCPLKELC 217
>gi|23098497|ref|NP_691963.1| DNA-lyase [Oceanobacillus iheyensis HTE831]
gi|22776723|dbj|BAC12998.1| DNA-(apurinic or apyrimidinic site) lyase [Oceanobacillus iheyensis
HTE831]
Length = 222
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E++E I+ G + A R+K F+ R++ + D+ ++ +P DK + LLSI+G+G ++
Sbjct: 70 ELAEKIRPSGFYRIKAARIKAFITWF-RKY-NYDVSIVQQIPHDKLRSELLSIKGIGDET 127
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ + + AF D RI R+G L + S+QK + R
Sbjct: 128 ADVMLVYAFKKQAFIADQYANRIFNRIG---------------LNVPSTYRSLQKVV-ER 171
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D E H L+ K+ C K KP CN CP++ C
Sbjct: 172 DLPNDSLLYQEYHALLVEHAKIHC-KVKPICNTCPVQTIC 210
>gi|224476573|ref|YP_002634179.1| putative endonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421180|emb|CAL27994.1| putative endonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 223
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I+ G+ A+ +K + L+ + VP D+A L S+ G+
Sbjct: 68 VSLEELEQDIRSIGLYRNKAKNIKKLCHSLIDKFDG-------KVPHDRAD--LESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + + ++ L + P K
Sbjct: 119 GRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVKEVESRLCSIIP------KD 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + H+QLI FG+ C P C+ CP+ ECR
Sbjct: 173 RWTKS-----------HHQLIFFGRYHCLARAPKCDICPLFDECR 206
>gi|452847106|gb|EME49038.1| hypothetical protein DOTSEDRAFT_49374 [Dothistroma septosporum
NZE10]
Length = 497
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 399 DGEKKNAIDWESLR--------KEVQRNSGKQERSRD--RMDSLDYEALRCANVKEISEA 448
DG K ++DW+ +R K ++R Q +S+D + + YE + +
Sbjct: 232 DGIGKGSVDWDVVRRAPQKEVFKAIERGGLAQVKSKDIQAILQIAYEENQARKAAFTDPS 291
Query: 449 IKERGMNNMLAERMKDFLNRLVR-EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
G N E K+ N + + + I L+ L + D A + +LS+ G+G K+ CV
Sbjct: 292 DNPAGAEN---EPEKEKQNEVTKAKQNIISLDHLHLLSTDDAINKMLSLPGIGPKTASCV 348
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L L +F VDT+V R+ LGWVP ++ Y + ++
Sbjct: 349 ALFCLQRPSFAVDTHVFRLCQYLGWVPKSTRKGQSKVDRNTTYSHCD----------VRI 398
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
Y LH LI GKV C P C A
Sbjct: 399 PDELKYPLHQLLIKHGKV-C----PRCRAA 423
>gi|407929765|gb|EKG22575.1| hypothetical protein MPH_00043 [Macrophomina phaseolina MS6]
Length = 342
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYL 493
Y+ + +++ E I+ G++ + L + R HG DL+ L D + A L
Sbjct: 11 YDNIYAGGPEKLQETIRCGGLHVRKTRIIMSILEEVRRRHGRWDLDHLLDASDEDAMKEL 70
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
+S + +G KS V L F VDT+V RIA GW P + E Q HL + PV
Sbjct: 71 MSYKYIGPKSAFVVMGWCLKRNRFTVDTHVYRIAGLWGWRPKEATREKTQSHLDAVIPV- 129
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKV--FCTKSKPNCNACPMRGECR 604
++LH+ LI G+ C + C ++ E +
Sbjct: 130 ----------------ELKFKLHFFLIQHGRTCPACRGGSKGDHQCAVQAEVK 166
>gi|15598691|ref|NP_252185.1| endonuclease III [Pseudomonas aeruginosa PAO1]
gi|107103025|ref|ZP_01366943.1| hypothetical protein PaerPA_01004094 [Pseudomonas aeruginosa PACS2]
gi|116051512|ref|YP_789652.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|218890260|ref|YP_002439124.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|254236439|ref|ZP_04929762.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|254242175|ref|ZP_04935497.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|296387984|ref|ZP_06877459.1| endonuclease III [Pseudomonas aeruginosa PAb1]
gi|313108859|ref|ZP_07794842.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|386057540|ref|YP_005974062.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|386067541|ref|YP_005982845.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|392982768|ref|YP_006481355.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|416867830|ref|ZP_11916116.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|416875861|ref|ZP_11918934.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|418584272|ref|ZP_13148336.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|418591842|ref|ZP_13155728.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|419754900|ref|ZP_14281258.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|420138609|ref|ZP_14646508.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|421152679|ref|ZP_15612257.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|421158996|ref|ZP_15618178.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|421166302|ref|ZP_15624564.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|421173249|ref|ZP_15631001.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|421179340|ref|ZP_15636932.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|421518036|ref|ZP_15964710.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|424939679|ref|ZP_18355442.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|451987559|ref|ZP_21935715.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|9949641|gb|AAG06883.1|AE004770_8 endonuclease III [Pseudomonas aeruginosa PAO1]
gi|115586733|gb|ABJ12748.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168370|gb|EAZ53881.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|126195553|gb|EAZ59616.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|218770483|emb|CAW26248.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|310881344|gb|EFQ39938.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|334833542|gb|EGM12621.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|334841489|gb|EGM20117.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|346056125|dbj|GAA16008.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|347303846|gb|AEO73960.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|348036100|dbj|BAK91460.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|375046119|gb|EHS38687.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|375049324|gb|EHS41825.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|384398718|gb|EIE45123.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|392318273|gb|AFM63653.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|403248618|gb|EJY62175.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|404347518|gb|EJZ73867.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|404524991|gb|EKA35279.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|404536198|gb|EKA45844.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|404538732|gb|EKA48254.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|404547208|gb|EKA56220.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|404548847|gb|EKA57786.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|451754792|emb|CCQ88238.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|453047484|gb|EME95198.1| endonuclease III [Pseudomonas aeruginosa PA21_ST175]
Length = 212
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HG PD +D L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|403069784|ref|ZP_10911116.1| HhH-GPD family protein [Oceanobacillus sp. Ndiop]
Length = 213
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 21/164 (12%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
++ E+++ I+ G N+ A+R+K F+N R H +I E ++ + ++ + LL + G+G
Sbjct: 65 SIDELAQLIRSSGYFNIKAKRIKAFMNWFKRYHYNI--EEIKKMDSNQLRYELLKVNGIG 122
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES-IQKY 559
++ + + L F VD RI R+G+ +P + L++ L S +Q+Y
Sbjct: 123 KETADVMLLYAFDKPIFVVDAYARRIFYRIGY----DMPTAYDGFRLDVEKQLPSHLQQY 178
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E H L+ KV C KS P C CP+ C
Sbjct: 179 -------------NEYHALLVEHAKVHC-KSSPICKGCPLHSIC 208
>gi|410668427|ref|YP_006920798.1| endonuclease [Thermacetogenium phaeum DSM 12270]
gi|409106174|gb|AFV12299.1| putative endonuclease [Thermacetogenium phaeum DSM 12270]
Length = 261
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L + +E++ ++ +N A++++ F +V E G +LE + + + LL
Sbjct: 65 EGLLSCSQEELAALVRPARYHNQKAKKLQSFCRVVVEEFGG-ELEDFLALEMKELRKRLL 123
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G ++ + + L F +D GRI RLG+ + E +Q + P
Sbjct: 124 AVYGIGPETADAIILYAAEKPIFVIDAYTGRIFSRLGFFSEKAGYEEMQRFFMTHLPP-- 181
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
D R E H + G C KS+P C CP+ C+
Sbjct: 182 -------------DVRLYNEYHALIDALGHYTCCKSQPRCGECPLEYRCK 218
>gi|156742725|ref|YP_001432854.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
gi|156234053|gb|ABU58836.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
Length = 219
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + + +EI+E I G A ++ RL+ EHG VP D D LL
Sbjct: 69 EKMLALSEEEIAELIYPVGFYRNKARTIRAICRRLIEEHGG-------KVPADL--DALL 119
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT+V RI R G+V + PE ++ L E+ P
Sbjct: 120 ALPGVGRKTANLVLTAGFDLPGICVDTHVHRICNRWGYVQTRT-PEETEMKLREILPF-- 176
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+Y W E++ L+T G+ C + P C+ACP+ C
Sbjct: 177 ---EY-WK-----------EINGLLVTLGQNICHPTSPRCSACPLAHLC 210
>gi|260905496|ref|ZP_05913818.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Brevibacterium linens BL2]
Length = 246
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +L AN+ E+ E I G A + N LV + +VP + D
Sbjct: 78 DAHSLAVANLIEVEELIHSTGFYRAKARNIVKLANELVDTYDG-------EVP--NSLDR 128
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT++GR+A RLGW + P + + L+P
Sbjct: 129 LVKLAGVGRKTANVVLGNAFDTPGLTVDTHMGRLARRLGWTE-EDDPVKAEHEIAALFP- 186
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
++ L L +++I G+ C +P C ACP+ C F
Sbjct: 187 ----------------KKDLTLLSHRVIFHGRRICHSRRPACGACPLMALCPSFG 225
>gi|417961869|ref|ZP_12604193.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
gi|380331928|gb|EIA22866.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
Length = 155
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
KE+ + IK G+ M ++ + + L R++ E + +VP + +D L+++ G+G K
Sbjct: 15 KELQDKIKSIGLYRMKSKNIIN-LCRILEE------RFDSEVP--RTRDELITLPGVGRK 65
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V AF VD +V R++ R+G + P PE +L L++ +I + LW
Sbjct: 66 TANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLMK------NIDENLWT 118
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+C H+ +I G+ CT KPNC C + C+++
Sbjct: 119 -IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 151
>gi|225849644|ref|YP_002729878.1| endonuclease III [Persephonella marina EX-H1]
gi|225645619|gb|ACO03805.1| endonuclease III [Persephonella marina EX-H1]
Length = 213
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK- 488
D +D E + C + +++ E IK G + + +F R +D+ DK
Sbjct: 60 DLVDLEKVSCIHEEKLQEIIKPAGFYKRKSRTLIEFSRRF------------KDIEKDKI 107
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
+D LLS++G+G ++ + + L L+ F VD R+ R+G+ + +Q
Sbjct: 108 TRDLLLSVKGIGKETADSILLYALNRPYFVVDAYTRRVFSRIGFFDKNLSYDEIQ----- 162
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
E +K L P D E H ++ GK FC K KP C CP+ C+
Sbjct: 163 -----ELFEKNL-PE----DTDIYKEYHALIVELGKSFCRK-KPLCKDCPLFANCK 207
>gi|153815003|ref|ZP_01967671.1| hypothetical protein RUMTOR_01218 [Ruminococcus torques ATCC 27756]
gi|317501555|ref|ZP_07959751.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088583|ref|ZP_08337494.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440472|ref|ZP_08620059.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847571|gb|EDK24489.1| endonuclease III [Ruminococcus torques ATCC 27756]
gi|316897066|gb|EFV19141.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407540|gb|EGG87040.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012917|gb|EGN42808.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
Length = 207
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A A++KE+ + IK G A+ + + + + G +VP ++ + L
Sbjct: 62 DAFADADLKELEQDIKPTGFYRNKAKNIIACMKDIREKFGG-------EVP--RSLEDLT 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ +R H + VDT+V RI+ RLG+ Q PE ++ L++ P
Sbjct: 113 SLAGVGRKTANVIRGNIYHDASVVVDTHVKRISNRLGFTK-QSDPEKIEQDLMKELPK-- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D LY + Q+ITFG+ CT P C C ++ C
Sbjct: 170 -------------DHWILYNI--QIITFGRSICTARNPKCGECFLKKYC 203
>gi|336436197|ref|ZP_08615910.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008237|gb|EGN38256.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 211
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 35/180 (19%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAER----MKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
+A A+++E+ + IK G + A+ M+D +R E VP ++
Sbjct: 62 DAFADADLRELEQDIKPTGFYHNKAKNIISCMRDVRDRFGGE-----------VP--RSL 108
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
+ L S+ G+G K+ +R H + VDT+V RI+ RLG Q PE ++ L++
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYHDASVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKEL 167
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
P D LY + Q+ITFG+ CT P C C +R C+ + +
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARSPKCEECFLRAYCKTISKSI 210
>gi|365830798|ref|ZP_09372361.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|374627265|ref|ZP_09699672.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
gi|365262808|gb|EHM92680.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|373913288|gb|EHQ45126.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
Length = 213
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A++ E+ + IK G+ A+ + + L+ + I VP D+ + L
Sbjct: 62 EAVSQASLPELEQDIKTIGLYRNKAKNLLALSHVLIEQFDGI-------VPSDQKQ--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 113 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKRDDNVLTVEKKLCR------ 166
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
SI + W + H+Q I FG+ FC + P+C C + C+
Sbjct: 167 SIPRNRWNKS-----------HHQFIFFGRYFCKATNPSCTECKLVDMCK 205
>gi|228469748|ref|ZP_04054714.1| endonuclease III [Porphyromonas uenonis 60-3]
gi|228308683|gb|EEK17416.1| endonuclease III [Porphyromonas uenonis 60-3]
Length = 214
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A+V ++ + N A+ + R+ +EH + VP ++ L
Sbjct: 63 EAMARASVDDLLAFMGSVSYPNNKAKHLIGLSERIAQEHHGV-------VP--STREELE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G KS + + A PVDT+V R+A R+G L S L + L
Sbjct: 114 ALPGVGRKSASVMLAVCFDTPAMPVDTHVFRVAKRIG------LASSRATTPLAVEQALR 167
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
++ + L H+QLI G+ C KP C+ C + CRH+A+A
Sbjct: 168 R----------RIPREQLIRAHHQLILLGRYICKARKPLCDECTLTACCRHYATA 212
>gi|333901551|ref|YP_004475424.1| endonuclease III [Pseudomonas fulva 12-X]
gi|333116816|gb|AEF23330.1| endonuclease III [Pseudomonas fulva 12-X]
Length = 212
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V +SE IK G+ N A+ + + L+ +HGS PD +D L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------RDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|14591284|ref|NP_143362.1| endonuclease III [Pyrococcus horikoshii OT3]
gi|3257923|dbj|BAA30606.1| 222aa long hypothetical endonuclease III [Pyrococcus horikoshii
OT3]
Length = 222
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 459 AERMKDFLNRL-----------VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
E M++FL L + E I L+ PDK ++ L+ + G+G K V
Sbjct: 74 VEEMQNFLKSLKVGLWRSKGKWIVETSRIILKKYNGRVPDKFEE-LIKLPGIGRKCANIV 132
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
A PVDT+V RI+ RLG P PE ++ L L P E I
Sbjct: 133 LAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEERLKSLIPREEWIY---------- 182
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++ ++ GK C KP C CP+RG C
Sbjct: 183 -------VNHAMVDHGKSVCKPIKPRCWECPLRGLC 211
>gi|386867584|ref|YP_006280578.1| EndoIII-related endonuclease [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701667|gb|AFI63615.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 247
Score = 56.2 bits (134), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A ++++ I+ G ++ AE + ++V G +VP + + L
Sbjct: 69 EALADARLEDVESIIRPLGFYHVKAEHIIAVARQIVERFGG-------EVP--QTMEELT 119
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL----GWVPLQPLPESLQLHLLELY 550
S+ G+G K+ V H FPVDT+V R+ RL W+ PE ++ + +
Sbjct: 120 SLPGVGRKTANVVLGNAFHVPGFPVDTHVIRVTGRLHWRDDWMKANTTPERIEQEITGCF 179
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P E W +L ++LI FG+ CT P C CP+ C
Sbjct: 180 PESE------WT-----------DLSHRLIIFGRNICTSRSPECETCPLLPTC 215
>gi|15805320|ref|NP_294012.1| endonuclease III [Deinococcus radiodurans R1]
gi|6457961|gb|AAF09870.1|AE001890_2 endonuclease III [Deinococcus radiodurans R1]
Length = 225
Score = 56.2 bits (134), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A +I I+ G+ A+ + LV HG +VP D D
Sbjct: 72 DAHALSQATADDIEPYIRSIGLYRGKAKNLAALARLLVERHGG-------EVPNDF--DA 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
++++ G G K+ V + A VDT+VGR+A RLG + +Q P+ ++ L +L+P
Sbjct: 123 VVALPGAGRKTANVVLSNAYDYPAIAVDTHVGRLARRLG-LSVQTNPDKVEADLQKLFP- 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
R ++ LH+ LI G+ C KP C +C + C
Sbjct: 181 ---------------RDRWVF-LHHALILHGRRVCHARKPQCPSCELASFC 215
>gi|340354779|ref|ZP_08677477.1| endonuclease III [Sporosarcina newyorkensis 2681]
gi|339623031|gb|EGQ27540.1| endonuclease III [Sporosarcina newyorkensis 2681]
Length = 215
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I+ G+ ++ ++ L+ EHG +VP ++D ++++ G+
Sbjct: 68 VSIEELQQDIRSIGLYRNKSKNIQALSGILIEEHGG-------EVPA--SRDVMMTLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V A VDT+V R+A RLG + P ++ ++ P+ + Q
Sbjct: 119 GRKTANVVVSNAFGVPALAVDTHVERVAKRLGMNRWKDRPIDVEEKIMRWTPMEKWTQT- 177
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
H+Q+I FG+ C PNC CP+ CR
Sbjct: 178 ----------------HHQIIFFGRYHCKAQNPNCPECPLLHLCR 206
>gi|332299912|ref|YP_004441833.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
gi|332176975|gb|AEE12665.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
Length = 219
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ A+V ++ + N A+ + R+ ++H I VP ++ L
Sbjct: 63 EAMARASVDDLLAFMGSVSYPNNKAKHLIGLSERITQKHHGI-------VP--STREELE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLELYPVL 553
++ G+G KS + + A PVDT+V R+A R+G + P +++ L++ P
Sbjct: 114 ALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVKRIP-- 171
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
Q L H+QLI G+ C KP C C + CRH+A A
Sbjct: 172 ---------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYAVA 212
>gi|225569891|ref|ZP_03778916.1| hypothetical protein CLOHYLEM_05985 [Clostridium hylemonae DSM
15053]
gi|225161361|gb|EEG73980.1| hypothetical protein CLOHYLEM_05985 [Clostridium hylemonae DSM
15053]
Length = 208
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA A++KE+ + IK G + A + + + G +VP + + L+
Sbjct: 62 EAFAQADLKELEQDIKPTGFYHTKARNIIACMKEIRDRFGG-------EVP--RELEELV 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ +R H + VDT+V RI+ RLG PE ++ L++ P
Sbjct: 113 SLAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTENND-PEKIEQDLMKELP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
D LY + Q+ITFG+ CT KP C C ++ C+ +
Sbjct: 169 ------------RDHWILYNI--QIITFGRSVCTARKPKCRDCFLQKYCKEY 206
>gi|167042822|gb|ABZ07540.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine microorganism HF4000_ANIW137I15]
Length = 257
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 13/178 (7%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L E LR ++ I+ N+ A+R+K F+ L H DL L +P D +
Sbjct: 69 LSPEGLRRIPKFRLAHLIRPARFFNVKADRLKAFVRFLWVGHQG-DLNLLFGLPADLLRK 127
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
YLL ++G+G ++ + + L F VD RI RLG Q P + +
Sbjct: 128 YLLELKGIGPETADSILLYAAEFPVFVVDAYTHRIFSRLGL--YQGPPSGRKGY------ 179
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
E++Q+ + R D E H L+ GK +C + +P C CP+ C + ++A
Sbjct: 180 --EALQEG-FHRFLSRDAPLYNEYHALLVELGKEYC-RPRPKCEFCPLSSICAYPSAA 233
>gi|429331422|ref|ZP_19212179.1| endonuclease III [Pseudomonas putida CSV86]
gi|428763895|gb|EKX86053.1| endonuclease III [Pseudomonas putida CSV86]
Length = 212
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV +HGS +VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILVEQHGS-------EVP--QTREALEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKALLKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KAYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|397780479|ref|YP_006544952.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
gi|396938981|emb|CCJ36236.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
Length = 233
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD + L A+ +I+ I N AER+++F V E + D + V ++
Sbjct: 63 LDPDLLAAADTGDIARLIIPSRFYNQKAERIQEFAGIYVAEFQA-DPAVMAAVETGALRE 121
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL++RG G ++V+ + L F VD RI R G +P + + Q + P
Sbjct: 122 RLLAVRGFGKETVDTILLYACRKPVFVVDAYTRRIFSRYGLLPEKVSYDRTQRLFSDHLP 181
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
D + + H Q++ GK C KS P C+ CP+R C A A
Sbjct: 182 P---------------DVKLFNDYHAQIVRLGKTACRKS-PLCDRCPIRRVCGSLRCAAA 225
>gi|119173285|ref|XP_001239121.1| hypothetical protein CIMG_10143 [Coccidioides immitis RS]
Length = 434
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN-----RLVREHGSID-------- 477
S+++ +R A V+EI +AIK G+ + ++ +K+ L + R +D
Sbjct: 228 SVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNET 287
Query: 478 ----------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
L+ + + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 288 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 347
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
LGWVP + + E LE+ ++ Y LH I GK
Sbjct: 348 KWLGWVPPEKVNEITAFRHLEV----------------RVPDHLKYSLHQLFIFHGK 388
>gi|392869327|gb|EAS27228.2| HhH-GPD family base excision DNA repair protein [Coccidioides
immitis RS]
Length = 444
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN-----RLVREHGSID-------- 477
S+++ +R A V+EI +AIK G+ + ++ +K+ L + R +D
Sbjct: 238 SVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNET 297
Query: 478 ----------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
L+ + + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 298 VHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLC 357
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584
LGWVP + + E LE+ ++ Y LH I GK
Sbjct: 358 KWLGWVPPEKVNEITAFRHLEV----------------RVPDHLKYSLHQLFIFHGK 398
>gi|373856599|ref|ZP_09599343.1| endonuclease III [Bacillus sp. 1NLA3E]
gi|372453578|gb|EHP27045.1| endonuclease III [Bacillus sp. 1NLA3E]
Length = 236
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I+ G+ A+ ++ L+ E+ + VP K++D L+ + G+
Sbjct: 86 VSLEELQQDIRSIGLFRNKAKNIQKLCQMLLDEYDGV-------VP--KSQDELMRLPGV 136
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG+ + PVLE ++K
Sbjct: 137 GRKTANVVASVAFGVPAIAVDTHVERVSKRLGYCRWKD-------------PVLE-VEKT 182
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L ++ K + H++LI FG+ C P C ACP+ CR
Sbjct: 183 LMKKIPKEEWSVT---HHRLIFFGRYHCKAQNPQCKACPLLDVCR 224
>gi|347758515|ref|YP_004866077.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591033|gb|AEP10075.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 211
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ + IK G+ N A+ + LVR++G VP D+ D L+ + G+G K+
Sbjct: 72 LKDHIKTIGLYNTKAKNVMAAAEMLVRDYGG-------KVPEDR--DELVKLPGVGRKTA 122
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + H VDT++ R++ R G P PE+++ L ++ P P
Sbjct: 123 NVVLNIAFGHETIAVDTHLFRVSNRTGLAP-GATPEAVEAKLEKVIP----------PEF 171
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ H+ LI G+ C KP+C CP+R C
Sbjct: 172 RR-------HAHHWLILHGRYICKARKPSCPVCPVRDVC 203
>gi|331083706|ref|ZP_08332817.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
gi|330403917|gb|EGG83469.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
Length = 217
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A A++KE+ + IK G + A+ + R+ + + +VP ++ +
Sbjct: 60 DMQAFAKADLKELEQDIKPTGFYHNKAKNIIGCAQRICQVYSG-------EVP--RSLED 110
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+S+ G+G K+ +R H + VDT+V RI+ RLG+ + PE ++ L+++ P
Sbjct: 111 LVSLPGVGRKTANVIRGNIFHEPSVVVDTHVKRISKRLGFTKEED-PEKIEQDLMKVLP- 168
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K W LY + Q+ITFG+ C P C C + C+ +
Sbjct: 169 -----KEHW---------ILYNI--QIITFGRQICFARSPKCEECFLTEYCKEY 206
>gi|15643134|ref|NP_228177.1| endonuclease III [Thermotoga maritima MSB8]
gi|403252815|ref|ZP_10919120.1| endonuclease III [Thermotoga sp. EMP]
gi|418046300|ref|ZP_12684394.1| endonuclease III [Thermotoga maritima MSB8]
gi|8134433|sp|Q9WYK0.1|END3_THEMA RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|4980869|gb|AAD35453.1|AE001716_16 endonuclease III [Thermotoga maritima MSB8]
gi|351675853|gb|EHA59013.1| endonuclease III [Thermotoga maritima MSB8]
gi|402811577|gb|EJX26061.1| endonuclease III [Thermotoga sp. EMP]
Length = 213
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +++ + IKE GM AER+ + LV ++G PD ++ LL + G+
Sbjct: 60 AKPEDLYDLIKESGMYRQKAERIVEISRILVEKYGG--------RVPDSLEE-LLKLPGV 110
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V RI+ RLGWV + PE + L +L P +
Sbjct: 111 GRKTANIVLWVGFKKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------ED 163
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
LW ++ ++ FG+ C P C C ++ C +
Sbjct: 164 LWG-----------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|313679175|ref|YP_004056914.1| DNA-(apurinic or apyrimidinic site) lyase [Oceanithermus profundus
DSM 14977]
gi|313151890|gb|ADR35741.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Oceanithermus profundus DSM 14977]
Length = 223
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A E+ I+ G+ A + +LV EHG +VP DK + L+
Sbjct: 76 EALAAATPGEVEPFIRRIGLFRTKARNLVALARKLVEEHGG-------EVPRDK--EALM 126
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT++ R+A RL + PE + L L+P
Sbjct: 127 ALPGVGWKTATVVLGAAFGVPGIAVDTHLARLAHRL-CLSRARTPEKIGAELEALFPR-- 183
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +H+ LI G+ CT KP C+AC + +C
Sbjct: 184 --EKWVF-------------VHHALILHGRYVCTARKPKCDACVLADDC 217
>gi|254168132|ref|ZP_04874979.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|197622898|gb|EDY35466.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
Length = 211
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 19/121 (15%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PD +D LL + G+G K+ V VDT+V RI+ RLGWV + PE +
Sbjct: 104 PDNLED-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L+++ P +KY W + +L L+ FG+ C P C+ CP++ C++
Sbjct: 162 LMKVLP-----KKY-WKDINEL-----------LVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 606 F 606
+
Sbjct: 205 Y 205
>gi|358374017|dbj|GAA90612.1| HhH-GPD family base excision DNA repair protein [Aspergillus
kawachii IFO 4308]
Length = 458
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH---------GSID---- 477
S+D++A+R A +K++ EAIK G+ ++ ++++K L+ + E+ GS D
Sbjct: 234 SVDWDAVRRAPLKDVFEAIKRGGLADVKSKKIKAILDMVYEENQQRRDMLLKGSQDAPQD 293
Query: 478 ----------------------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
L L + + A L+ G+G K+ CV L L
Sbjct: 294 LLTKSEGGKQYEIACADQNFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRP 353
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 354 CFAVDTHIFRICKWLGWVPPDKATEITAFSHLEV----------------RIPDHLKYSL 397
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H LI G KS P C A
Sbjct: 398 HQLLIRHG-----KSCPRCRA 413
>gi|358449635|ref|ZP_09160117.1| endonuclease III [Marinobacter manganoxydans MnI7-9]
gi|385331026|ref|YP_005884977.1| endonuclease III [Marinobacter adhaerens HP15]
gi|311694176|gb|ADP97049.1| endonuclease III [Marinobacter adhaerens HP15]
gi|357226157|gb|EHJ04640.1| endonuclease III [Marinobacter manganoxydans MnI7-9]
Length = 212
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + L+ +HG P++ +D L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGG--------QVPERRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H+A VDT++ R++ R G P + + E ++ L+ L P
Sbjct: 113 ALPGVGRKTANVVLNTAFGHMAMAVDTHIYRVSNRTGIAPGKNVLE-VENRLMRLVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ CT KP C AC + C
Sbjct: 169 --------------KEFLLDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|312899629|ref|ZP_07758955.1| endonuclease III [Enterococcus faecalis TX0470]
gi|311293308|gb|EFQ71864.1| endonuclease III [Enterococcus faecalis TX0470]
Length = 215
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI + IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIDKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|218782481|ref|YP_002433799.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218763865|gb|ACL06331.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 210
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+KE+ E I G + A+R+K+ L+ +HG + VP D + LL++ G+G
Sbjct: 71 LKELEELIHATGFFHTKAKRVKECAAALMEKHGGV-------VPRDM--ESLLALPGVGR 121
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V VDT+V RI+ RLG+ + P ++ L++L P K W
Sbjct: 122 KTANVVLNAAFEIPGIVVDTHVQRISQRLGFTKFKD-PVKIEFDLMKLLP------KESW 174
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+D + LH LI G+ CT KP C C + C+
Sbjct: 175 -----ID----FSLH--LIYHGRAVCTARKPKCGECTLAEWCK 206
>gi|300779992|ref|ZP_07089848.1| DNA-(apurinic or apyrimidinic site) lyase [Corynebacterium
genitalium ATCC 33030]
gi|300534102|gb|EFK55161.1| DNA-(apurinic or apyrimidinic site) lyase [Corynebacterium
genitalium ATCC 33030]
Length = 275
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 414 EVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH 473
+V+ NS E R D+ Y A ANV EI+E I+ G A +K LV +H
Sbjct: 79 DVRVNSVTPELFRRYPDAASYAA---ANVDEIAEIIRPTGFFRAKAGHLKGIGEALVDKH 135
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533
G DVP A + L+ + G+G K+ VR VDT+ R+ R+ +
Sbjct: 136 GG-------DVP--TAIEDLVKLPGVGRKTAHVVRGNAFGMPGLTVDTHFQRLVHRMMLI 186
Query: 534 PLQPL-PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
P +++ + + I+K W T++ +++I G+ C KP
Sbjct: 187 DASITDPVAIE------HAIASVIEKREW---------TMFS--HRIIFHGRRVCHARKP 229
Query: 593 NCNACPMRGECRHFASA---FASARLALPGPEEKSIV 626
C ACP+ +C F + + A + GPE + I+
Sbjct: 230 ACGACPVAFDCPSFGTGPVEWDEAEKLVTGPEREHIL 266
>gi|451996449|gb|EMD88916.1| hypothetical protein COCHEDRAFT_1226992 [Cochliobolus
heterostrophus C5]
Length = 525
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH---------------GS 475
S+D+ +R A+ KEI EAIK G+ ++ ++ +K L + E+ GS
Sbjct: 243 SVDWNKVRQADQKEIFEAIKSGGLADVKSKDIKKILQMVWEENQARRKELQSSSHKAPGS 302
Query: 476 -------------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
+ L+ L + + A + L G+G K+ CV L L +
Sbjct: 303 ANEAEEEKNTEIEKANQDVVSLDHLHLLSSEDAFNALTKYPGIGPKTASCVLLFCLQRPS 362
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY--PVLESIQKYLWPRLCKLDQRTLYE 574
F VDT+V R+ LGWVP L + P S + R + Y+
Sbjct: 363 FAVDTHVFRLCKWLGWVPPPGDSRGLAPGAKGTFAGPTRNSTYAHCEVR---IPDHLKYQ 419
Query: 575 LHYQLITFGKVFCTKSKPNCNA 596
LHY LI G KS P C A
Sbjct: 420 LHYLLIKHG-----KSCPRCRA 436
>gi|299538661|ref|ZP_07051944.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|424736041|ref|ZP_18164502.1| endonuclease III [Lysinibacillus fusiformis ZB2]
gi|298726248|gb|EFI66840.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|422950070|gb|EKU44440.1| endonuclease III [Lysinibacillus fusiformis ZB2]
Length = 220
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ RL+ E+G ++P ++
Sbjct: 64 DYLAV---SLEELQQDIRSIGLYRNKAKNIQALCQRLLDEYGG-------EIPA--TREA 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V + A VDT+V R++ RLG + + V
Sbjct: 112 LVTLPGVGRKTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKD----------SVLEV 161
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
E+I K K + H+QLI FG+ C P C CP+ +CR
Sbjct: 162 EETIMK-------KTPMEKWSKTHHQLIFFGRYHCKAQNPGCRTCPLLNDCR 206
>gi|189423447|ref|YP_001950624.1| HhH-GPD family protein [Geobacter lovleyi SZ]
gi|189419706|gb|ACD94104.1| HhH-GPD family protein [Geobacter lovleyi SZ]
Length = 225
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 449 IKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
I+ G N+ A R++ F L +++ GS+D L P + + LL+++G+G ++ + +
Sbjct: 76 IRPAGYFNVKAVRLQAFTTFLQQQYQGSLDR--LFAAPWQQTRTELLAVKGIGPETADSI 133
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L H +F VD RI RLG V + + L+ H ++ RL L
Sbjct: 134 LLYAGHKPSFVVDAYTRRIFSRLGLVDERISYDGLRRHFMD--------------RL-TL 178
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
D E H L+ GK C + +P C++C + +C + A+
Sbjct: 179 DTALFNEYHALLVELGKQAC-RPRPQCSSCCLAAQCSYNAT 218
>gi|15678789|ref|NP_275906.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621854|gb|AAB85267.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 233
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A ++EI I++ G ++ A R VRE I LE PD + LL
Sbjct: 78 EDVAYAPLEEIEALIRKAGFYHVKARR--------VREVSRIILEEYDGKVPDDINE-LL 128
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ CV + A PVDT+V RI+ R+G V + PE + L+++ P
Sbjct: 129 KLPGVGRKTANCVLVYAFGRPAIPVDTHVHRISNRIGLVDTRT-PEETERALMKVIP--- 184
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ W EL+ ++ FG+ C P CP+ C ++
Sbjct: 185 ---REYW-----------IELNDLMVQFGQDICRPLGPRHEECPIADHCDYY 222
>gi|398399341|ref|XP_003853090.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
gi|339472972|gb|EGP88066.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
Length = 484
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 399 DGEKKNAIDWESLR--------KEVQRNSGKQERSRDRMDSLD--YEALRCANVKEISEA 448
+G K ++DW+++R K ++R + +S+D L YE + A
Sbjct: 230 EGVGKGSVDWDAVRTASNHDVFKAIERGGLAKIKSKDIQSILQIAYEENQERKAALTGSA 289
Query: 449 IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508
G + +D + + E I L+ L + D A ++ G+GLK+ CV
Sbjct: 290 EDPAGAEHAQESEKQDEIEKA--EQNVISLDHLHLLSRDDAIRKMVEFPGIGLKTASCVA 347
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVP 534
L + H +F VDT+V R+ LGWVP
Sbjct: 348 LFCMGHASFAVDTHVFRLCQYLGWVP 373
>gi|237756607|ref|ZP_04585124.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691238|gb|EEP60329.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 215
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
KEI E I G A+ +K+ LV + S VP D + LLS +G+G K
Sbjct: 76 KEIEELIYPVGFYRNKAKIIKEISKILVEKFNS-------KVPDDL--ETLLSFKGVGRK 126
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V A VD +V RI+ R+G V + PE + L+E+ P +KY W
Sbjct: 127 TANLVLSEGFGKPAICVDVHVHRISNRIGLVKTKN-PEETEFKLMEILP-----KKY-WK 179
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++++ + FG+ C KP CN CP+ C +
Sbjct: 180 -----------DINFVFVAFGQTICKPVKPKCNQCPIIKYCEY 211
>gi|160902966|ref|YP_001568547.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
gi|160360610|gb|ABX32224.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
Length = 216
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID 477
N K + + D L+ E L ++++ I+ G N+ ++R+K+FL L + + D
Sbjct: 43 NVEKSIENLKQRDLLEPEKLSKIKEDDLAQLIRSSGFYNLKSKRLKNFLEWLKKY--NYD 100
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
++ +++ ++ LLSI+G+G ++ + + L F +D R+ RLG +
Sbjct: 101 IDKIKNKSVTSLREELLSIKGIGKETADSILLYAFEMPVFVIDAYTKRMFSRLGLI---- 156
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
L + Q + L K D + E H ++ KV+C K+ P C+ C
Sbjct: 157 -----------LSREYDEFQDFFEKNLTK-DVQLYNEYHALIVKHSKVYCKKT-PKCSDC 203
Query: 598 PMRGEC 603
++ +C
Sbjct: 204 FLKEKC 209
>gi|367021722|ref|XP_003660146.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
gi|347007413|gb|AEO54901.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
Length = 573
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 47/212 (22%)
Query: 398 ADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNM 457
AD KN D LR+E +G S+D+ +R ++ +E+++ IK G M
Sbjct: 329 ADAAIKNLADHYGLRQE---GTG--------AGSIDWNKIRLSSHQELAQVIKVAGNGPM 377
Query: 458 LAERMKDFLNRLVREHGS------------------IDLEWLRDVPPDKAKDYLLSIRGL 499
++ +K L+ + E+ + L+++ + D+A +S G+
Sbjct: 378 KSKHIKQILDIVFDENVQRAMMQDPAPEAGKKAQDLLSLDYMHGMTKDEAMAKFVSYPGV 437
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G+K+ CV L L F VDT+V + LGWVP P++ H +
Sbjct: 438 GIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGWVPENADPDNCFRH-----------GDF 486
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSK 591
+ P K Y LH I G+V C K +
Sbjct: 487 MVPDHLK------YGLHQLFIRHGQV-CFKCR 511
>gi|225574096|ref|ZP_03782707.1| hypothetical protein RUMHYD_02161 [Blautia hydrogenotrophica DSM
10507]
gi|225038696|gb|EEG48942.1| endonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 210
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+++E+ + IK G + A+ + RLV E+G +VP D + L+S+ G+
Sbjct: 68 ADLRELEQDIKPTGFYHNKAKNIIGCAQRLVNEYGG-------EVPSDL--EALVSLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R H + VDT+V RI+ RLG + P ++ L+++ P +
Sbjct: 119 GRKTANVIRGNIFHEPSVVVDTHVKRISRRLGLTREED-PVKIEKDLMKVLP------RE 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
W LY + Q+ITFG+ C P C C + C +
Sbjct: 172 HW---------ILYNI--QIITFGRQICFARSPKCEECFLTKYCSEY 207
>gi|169831405|ref|YP_001717387.1| HhH-GPD family protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638249|gb|ACA59755.1| HhH-GPD family protein [Candidatus Desulforudis audaxviator MP104C]
Length = 250
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 16/193 (8%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
RN K + DSL E + E+ I+ N +R+KD + ++RE
Sbjct: 59 RNVEKAIANLKARDSLSVEGILALPHAELGLLIRPTRYYNQKTQRLKD-VCLVIREDFGG 117
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
D P + LL++RG+G ++ + + L F +D RI RLG
Sbjct: 118 DTGLFLQQEPGALRRRLLAVRGIGKETADSILLYAAGRPVFVIDHYTHRILKRLGLAHGG 177
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
+ LQ HL E + L+ E H L+T G C K+ P C
Sbjct: 178 ESYDQLQ-HLFEAH--------------LPLNAALFNEYHALLVTHGHRLCLKTGPRCPE 222
Query: 597 CPMRGECRHFASA 609
CP+ C H + A
Sbjct: 223 CPLSDLCAHASQA 235
>gi|154505234|ref|ZP_02041972.1| hypothetical protein RUMGNA_02748 [Ruminococcus gnavus ATCC 29149]
gi|336433960|ref|ZP_08613767.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794432|gb|EDN76852.1| endonuclease III [Ruminococcus gnavus ATCC 29149]
gi|336014865|gb|EGN44696.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
Length = 208
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + IK G + A+ + L+ G +VP ++ + L S+ G+
Sbjct: 67 ADLKELEQDIKPTGFYHNKAKNIIACTRDLLYRFGG-------EVP--RSLEDLTSLAGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R H + VDT+V RI+ RLG + PE ++ L++ P
Sbjct: 118 GRKTANVIRGNIYHDPSVVVDTHVKRISRRLGLTKNED-PEKIETDLMKELPK------- 169
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
D LY + Q+ITFG+ CT P C C ++ C+ F
Sbjct: 170 --------DHWILYNI--QIITFGRSICTARSPKCEQCFLQKYCKEF 206
>gi|78356480|ref|YP_387929.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
gi|78218885|gb|ABB38234.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
Length = 221
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 16/183 (8%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID 477
N+G+ + D L + A + E ++ G A ++ + + + E D
Sbjct: 46 NAGQALQRMRSADMLSESGVAAAAPDTLEELVRPAGFYRQKAATLRRLV-QFLYEEADGD 104
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
+ L D + LL I+G+G ++ + + L L +F VD RI VR G +P
Sbjct: 105 IRNLAGTSMDSLRARLLDIKGIGPETADSILLYALDMPSFVVDAYTRRICVRHGLLPEDV 164
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
++ +++ P D E H L+ K +C K+ P C++C
Sbjct: 165 QYAEMREFFMDVLPA---------------DVSVYNEYHALLVRVAKEWCRKTHPRCDSC 209
Query: 598 PMR 600
P+R
Sbjct: 210 PLR 212
>gi|73668473|ref|YP_304488.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395635|gb|AAZ69908.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 204
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A+V EI IK+ G + A R+K+ L+ ++G VP D + LL
Sbjct: 58 EEMVRADVSEIETLIKDVGFYRVKAGRIKEISRLLLEKYGG-------RVPDDM--EALL 108
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ CV A VDT+V RI+ RLG V + +PE + L +++P
Sbjct: 109 ELPGVGRKTANCVLAHAFLKDALAVDTHVHRISNRLGLVETK-VPEETETELKKIFP--- 164
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
QKY W + L L+ G+ C P C C + C
Sbjct: 165 --QKY-WRHVNLL-----------LVKLGQNTCRPISPRCKTCTLDDIC 199
>gi|414074236|ref|YP_006999453.1| Endonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974156|gb|AFW91620.1| Endonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
Length = 218
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+EI I+ G+ A+ + LV + G I L D+P DK
Sbjct: 61 DAQTMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLVADFGGI----LPDLPKDK--KL 114
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL V + ++ L++L P
Sbjct: 115 LQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRLDIVAQKATVLEVEEKLMKLIPE 174
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +Q H+ LI FG+ C KP C CP+ C+
Sbjct: 175 DKWVQS-----------------HHHLIFFGRYHCKAKKPKCAGCPVLDYCK 209
>gi|386857869|ref|YP_006262046.1| putative endonuclease III [Deinococcus gobiensis I-0]
gi|380001398|gb|AFD26588.1| putative endonuclease III [Deinococcus gobiensis I-0]
Length = 229
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A+ ++I I+ G+ A + LV HG +VP D A
Sbjct: 72 DAHALSTASPEDIEPYIRRIGLYRGKARNLAALARLLVERHGG-------EVPDDFAA-- 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
++++ G G K+ V + A VDT+VGR+A RLG + Q P+ ++ L L+P
Sbjct: 123 VVALPGAGRKTANVVLSNAYGYPAIAVDTHVGRLARRLG-LSTQTHPDKVEADLERLFP- 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
R ++ LH+ LI G+ C +P C C MR C
Sbjct: 181 ---------------RGRWVF-LHHALILHGRRVCAARRPLCGECVMRPFC 215
>gi|170741581|ref|YP_001770236.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. 4-46]
gi|168195855|gb|ACA17802.1| helix-hairpin-helix motif [Methylobacterium sp. 4-46]
Length = 239
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ L A V E+ I A R++ L + HGS+ L++LRD+ A+ +
Sbjct: 63 DWAELIAAPVAEVEAVITGVTWPEQKAPRLQAVLRAVRERHGSLSLDFLRDLDVASARAW 122
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGW----VPLQPLPESLQLHLL 547
L +I G+G K S + TL A PVD++ R+A RLG V + P L+ L
Sbjct: 123 LEAIPGIGPKTSAAVLSFSTLRRPALPVDSHHHRVAQRLGLIGPKVDVGPAHAILRAQLP 182
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + + LY+ H ++ G+ C P C C + C
Sbjct: 183 EAWSA-----------------QDLYDNHEVMMLHGQRCCFHRAPACGTCVLLDLC 221
>gi|421874622|ref|ZP_16306225.1| endonuclease III [Brevibacillus laterosporus GI-9]
gi|372456478|emb|CCF15774.1| endonuclease III [Brevibacillus laterosporus GI-9]
Length = 190
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 26/164 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I++ G+ A+ ++ L+ E+G +VP + L+ + G+
Sbjct: 36 VSLEELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVP--NKHEELVKLPGV 86
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V RI+ RLG+ P P ++ L++
Sbjct: 87 GRKTANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMK----------- 135
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K+ ++ + H+++I FG+ C P C+ CP+ C
Sbjct: 136 ------KIPKKDWSDTHHRMIFFGRYHCKAQSPQCDICPLEDVC 173
>gi|330934949|ref|XP_003304766.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
gi|311318473|gb|EFQ87134.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
Length = 527
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL------NRLVREH---------GS 475
S+D+ +R A+ KEI EAIK G+ ++ ++ +K L N+ RE GS
Sbjct: 246 SVDWNRVRQADQKEIFEAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSGKAPGS 305
Query: 476 ID-------------------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
D L+ L + D A + L G+G K+ CV L L +
Sbjct: 306 ADEAEGEKHAEVEKAEQNIVSLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 365
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY--PVLESIQKYLWPRLCKLDQRTLYE 574
F VDT+V R+ LGWVP P L + P S + R + Y
Sbjct: 366 FAVDTHVFRLCKWLGWVPPPGDPAGLAPGAKGTFTGPTRNSTYAHCEVR---VPDHLKYP 422
Query: 575 LHYQLITFGKVFCTKSKPNCNA 596
LH LI GK C P C A
Sbjct: 423 LHQLLIRHGKT-C----PRCRA 439
>gi|258648124|ref|ZP_05735593.1| endonuclease III [Prevotella tannerae ATCC 51259]
gi|260852003|gb|EEX71872.1| endonuclease III [Prevotella tannerae ATCC 51259]
Length = 215
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D A+ A +E+ E IK N A+ + LV +VP +
Sbjct: 61 DAAAMAQATPEELLEYIKSVSYPNSKAKHLAGLAQMLVEAFNG-------EVP--TTLEE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ V+ + H A VDT+V R++ RLG VP Y V
Sbjct: 112 LTRLPGVGRKTANVVQAVAFHKAALAVDTHVFRVSHRLGLVPKTANTP---------YKV 162
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+++KY + + + H+ L+ G+ CT +P C+ C +RG C+
Sbjct: 163 EMALKKY-------IPEEKVAPSHFWLLLHGRYVCTALRPKCDKCDLRGLCK 207
>gi|154249096|ref|YP_001409921.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153032|gb|ABS60264.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 221
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ E++ A +E+ E IK G+ AER+ I LE V P+K ++
Sbjct: 67 NVESIANAKPEELYELIKPAGLYREKAERIIIV--------SKILLEKYDGVVPNKLEE- 117
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G K+ V ++ A VDT+V RI+ RLGWV + PE +
Sbjct: 118 LLELPGVGRKTANIVLHVSFDQAALAVDTHVHRISNRLGWVKTKT-PEQTE--------- 167
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
E ++K + P+L ++ ++ FGK C P C C + C F + + S
Sbjct: 168 -EELKKIMSPQL-------WGPINGSMVEFGKNICKPISPRCEQCFLTECCDFFKNKYNS 219
>gi|397906310|ref|ZP_10507123.1| Endonuclease III [Caloramator australicus RC3]
gi|397160659|emb|CCJ34460.1| Endonuclease III [Caloramator australicus RC3]
Length = 208
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 472 EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG 531
E I +E P+K +D L+ + G+G K+ V A VDT+V R+A RLG
Sbjct: 89 EASKIIVEQFNGNVPNKMED-LIKLPGVGRKTANVVLSNAFGKDAIAVDTHVFRVANRLG 147
Query: 532 WVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSK 591
L + LQ ++E+I K W R H+ LI G+ CT K
Sbjct: 148 ---LANAKDVLQTE----KQLMENIPKSYWSRA-----------HHWLIWHGRKICTARK 189
Query: 592 PNCNACPMRGECRHFA 607
P C+ C +R C++FA
Sbjct: 190 PKCDLCKLRDFCKYFA 205
>gi|404398986|ref|ZP_10990570.1| endonuclease III [Pseudomonas fuscovaginae UPB0736]
Length = 212
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ HGS +VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIELHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVLE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 --KQYL------LDS------HHWLILLGRYVCQARKPRCGSCRIEDLCEY 205
>gi|222054193|ref|YP_002536555.1| HhH-GPD family protein [Geobacter daltonii FRC-32]
gi|221563482|gb|ACM19454.1| HhH-GPD family protein [Geobacter daltonii FRC-32]
Length = 223
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDL----EWLR 482
+ D L LR V+E+++ IK G N+ + R+KDF+ L + G ++ +WL
Sbjct: 62 KADLLSAITLRDVPVEELAQVIKPAGFFNVKSARLKDFVGWLFERYLGRLESMFAGDWL- 120
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
+ ++ LL +RG+G ++ + + L + +F VD R+ LG V + E++
Sbjct: 121 -----ELREELLKVRGIGRETCDSILLYAGNKPSFVVDAYTKRLFTHLGLVSAKDDYEAV 175
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+ ++ P D E H ++ KV C K KP C+ C +
Sbjct: 176 RALFMDNLPA---------------DAALFNEFHALIVQHCKVHCRK-KPLCSGCRLHSS 219
Query: 603 C 603
C
Sbjct: 220 C 220
>gi|373451906|ref|ZP_09543824.1| endonuclease III [Eubacterium sp. 3_1_31]
gi|371967338|gb|EHO84809.1| endonuclease III [Eubacterium sp. 3_1_31]
Length = 215
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH--GSIDLEWLRDVPPDKAKDY 492
+AL AN KE+ I+ G+ A ++ LV EH G + P K+
Sbjct: 59 KALASANSKEVEAKIRRIGLYRNKARSIQALSASLV-EHFDGQV---------PQSMKE- 107
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ VR + A VDT+V RIA RLG + E ++ L
Sbjct: 108 LTSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKVGDSVEVVEQKLKR---- 163
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
I++ W R H+ I FG+ CT P C+ CP C+
Sbjct: 164 --KIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|424814711|ref|ZP_18239889.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339758327|gb|EGQ43584.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 239
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 25/179 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG---SIDLEWLRDVPPDKA 489
+Y+ + ++V +++ I G+ A+R+K L L REHG +++L D+ A
Sbjct: 63 NYKEIENSDVGRLADTINPAGLPQTKAQRLKRTLTAL-REHGEKEDYSVDFLGDMEDSNA 121
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLA--FPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+++L I+G+G K+ LL H A PVDT+V RI+ R +P + L
Sbjct: 122 QEWLEQIKGIGPKTASV--LLNFHFDADVIPVDTHVERISKRFRLIPFSASNQKAHDLLN 179
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
E P I+ H +I GK CT P C ++ C +
Sbjct: 180 ESVP--HDIKN---------------SFHKLVIEHGKNNCTARNPTCGNTKLKKYCSRY 221
>gi|390443653|ref|ZP_10231441.1| endonuclease III [Nitritalea halalkaliphila LW7]
gi|389666256|gb|EIM77710.1| endonuclease III [Nitritalea halalkaliphila LW7]
Length = 233
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP-LPESLQLHLLELYP 551
L+ + G+G K+ + + H VDT+V R++ RLG PL P ++ HL+ P
Sbjct: 112 LIKLPGVGRKTANVITSVIWHQPNMAVDTHVFRVSRRLGLAPLTAKTPLEVEKHLIRHIP 171
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
+ +++ H+ LI G+ C P C+AC + C+HF
Sbjct: 172 -----------------KEHVHQAHHWLILHGRYTCLARSPKCSACSITHLCKHFERGLR 214
Query: 612 SARLALPGP 620
+ R P P
Sbjct: 215 AKRKKDPLP 223
>gi|448529547|ref|ZP_21620567.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
gi|445708716|gb|ELZ60554.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
Length = 232
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 18/164 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L + D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDAMATDDAKA 132
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G VP L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDEQVP 192
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+Y LH LI G+ C+ P+C+
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDCD 219
>gi|448446559|ref|ZP_21590781.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
gi|445683703|gb|ELZ36093.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
Length = 232
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ +E+ E I+ G+ + A R++ L + E G + L +L + D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G VP ++ L L P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDALDALVP 192
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN--ACPMRGECRH 605
D+ T Y LH LI G+ C+ +C+ C +C +
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCDNPVCEAYCDCEY 231
>gi|307288541|ref|ZP_07568525.1| endonuclease III [Enterococcus faecalis TX0109]
gi|422703006|ref|ZP_16760834.1| endonuclease III [Enterococcus faecalis TX1302]
gi|306500448|gb|EFM69781.1| endonuclease III [Enterococcus faecalis TX0109]
gi|315165565|gb|EFU09582.1| endonuclease III [Enterococcus faecalis TX1302]
Length = 215
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMILFGRYHCLARAPKCEACPLLYMCQ 206
>gi|16126511|ref|NP_421075.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|221235291|ref|YP_002517728.1| endonuclease III [Caulobacter crescentus NA1000]
gi|13423785|gb|AAK24243.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|220964464|gb|ACL95820.1| endonuclease III [Caulobacter crescentus NA1000]
Length = 241
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 29/216 (13%)
Query: 390 ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAI 449
IS+ K G +A+ W + R R + +E L A ++ AI
Sbjct: 35 ISQLVKSSISGRTPDAVSWAAFL-------------RLRAEFKSWEDLAEAKTARVAMAI 81
Query: 450 KERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV-R 508
++ A R+ L + + G + L L+ + D+A+ L ++ G+G+K CV
Sbjct: 82 QDVTFPEDKARRLITALRMIEEKVGWLSLSHLKTLEVDQARWELQALPGVGVKVAACVLN 141
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
L A VDT+V R+A R+G V + Y L ++ W
Sbjct: 142 FSDLAMRALVVDTHVDRVARRIGLVGSGDTTNT--------YHTLMAMAPASW------T 187
Query: 569 QRTLYELHYQLIT-FGKVFCTKSKPNCNACPMRGEC 603
L+ELH+ + G++ C P C ACP++ C
Sbjct: 188 ADDLFELHWLMKRGLGQMLCGAEAPKCGACPVKQMC 223
>gi|398830894|ref|ZP_10589075.1| endonuclease III [Phyllobacterium sp. YR531]
gi|398213474|gb|EJN00068.1| endonuclease III [Phyllobacterium sp. YR531]
Length = 252
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ + I+ G+ A+ + L+ ++GS V PD ++D L+ + G+G K+
Sbjct: 99 KVGDYIRTIGLWRNKAKNVITLSQTLINDYGS--------VVPD-SRDELVKLPGVGRKT 149
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ RI RLG P + PE ++ L+++ P
Sbjct: 150 ANVVLSMAFGQATMAVDTHIFRIGNRLGLAPGK-TPEQVEDKLMKIIPA----------- 197
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LY H+ LI G+ C KP C AC + C+
Sbjct: 198 ------EYLYHAHHWLILHGRYTCKARKPECPACIIADICK 232
>gi|325968642|ref|YP_004244834.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
gi|323707845|gb|ADY01332.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
Length = 230
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
++E IK A+R+ F + G L DV +D+LL+ G+G ++
Sbjct: 85 LAEVIKGVNYRFTKAQRLVKFAKNVTMIGGLGKLRLRGDV-----RDFLLNQEGVGRETA 139
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
+ + L L+ P+ R+ RL L L L + Y + + + L PR
Sbjct: 140 DSIMLFALNIPTMPISQYTKRVFSRL-----------LGLKLGDNYDMWKEFLEGLLPR- 187
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D T +H +IT GK +C + P CN CP+R C
Sbjct: 188 ---DLYTYKLIHASIITIGKKYCLPTDPLCNKCPLRDVC 223
>gi|322418099|ref|YP_004197322.1| HhH-GPD family protein [Geobacter sp. M18]
gi|320124486|gb|ADW12046.1| HhH-GPD family protein [Geobacter sp. M18]
Length = 221
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L EA++ + ++E I+ G N+ + R+K F+ L+ HGS+D + D +D
Sbjct: 63 LSVEAIQEIHRDRLAELIRPSGFFNVKSVRLKGFVGWLLERHGSLDAMFRGDW--RALRD 120
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L+ +RG+G ++ + + L +F VD R+ RLG V + +
Sbjct: 121 ELIKVRGVGPETCDSILLYAGEKPSFVVDAYTRRLFSRLGVVKEDD----------DYHR 170
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
V ++L P D E H ++ K C K KP+C+ CP+R C H
Sbjct: 171 VRSLFMEHLPP-----DVPLFNEYHALIVEQCKRHCRK-KPSCDGCPLRHVCSH 218
>gi|340345847|ref|ZP_08668979.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520988|gb|EGP94711.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 217
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A VK+I + I+ G ++ + R ++ ID ++ VP D L+ + G+
Sbjct: 73 AKVKDIEKIIRSIGFYHVKSRR-------IIEVSKIIDSKYSGIVP--DTLDELIQLPGV 123
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ RLG V + PE +L L++ P +KY
Sbjct: 124 GRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVNTKS-PEETELVLMKKIP-----KKY 177
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
W +++ + +G+ C P CN C ++ C+++
Sbjct: 178 -W-----------IKINDTFVMYGQNICKPINPMCNVCKIKKNCKYY 212
>gi|302385477|ref|YP_003821299.1| endonuclease III [Clostridium saccharolyticum WM1]
gi|302196105|gb|ADL03676.1| endonuclease III [Clostridium saccharolyticum WM1]
Length = 218
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A ++EI EAI+ G+ A +K ++ E G VP D D +L
Sbjct: 62 EQMAEAPLEEIEEAIRTIGLYKNKARNLKKCCGQIANEFGG-------QVPGDI--DKIL 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ VDT+V RI+ RLGW + P +++ L + P
Sbjct: 113 TLAGVGRKTATLFLADAYGIPGITVDTHVFRISRRLGWASGKN-PAQVEMELQRILP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W R+ ++QLI G+ CT K NC C +R C
Sbjct: 169 ---KDHWNRI-----------NFQLIYHGREVCTARKANCGECMVREWC 203
>gi|398380961|ref|ZP_10539074.1| endonuclease III [Rhizobium sp. AP16]
gi|397720025|gb|EJK80586.1| endonuclease III [Rhizobium sp. AP16]
Length = 259
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I + IK G+ A+ + +L+R+ +VP + ++ L+++ G+G K+
Sbjct: 101 IRDYIKTIGLYRNKAKNVVALSEKLLRDFDG-------EVP--QTREELMTLPGVGRKTA 151
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + H VDT+V RIA RL P + P+ ++ LL++ P
Sbjct: 152 NVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLLKVIP------------- 197
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
DQ LY H+ LI G+ C KP C C + CR
Sbjct: 198 ---DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|320334742|ref|YP_004171453.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
gi|319756031|gb|ADV67788.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
Length = 247
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 472 EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG 531
E G + L+ LR + A+ L S+ G+G+K+ + L L A PVD ++ R++ RL
Sbjct: 121 ERGDLSLQHLRHLDDADARTALESLPGVGMKTASALLLFDLARPAMPVDGHIDRVSKRLH 180
Query: 532 WVPLQPLPESLQLHLLELYPVLESIQKY--LWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
+P E + VL++ + Y + PR D Y H I G+ C
Sbjct: 181 LIP-------------ERWNVLKAERWYDEVLPR----DWAQRYAYHVATIRHGRETCLT 223
Query: 590 SKPNCNACPMRGEC 603
P CNAC +R C
Sbjct: 224 RAPRCNACVLRDLC 237
>gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
Length = 212
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
K L I+G+G K+ + V L++ H FPVDT+V R+A RLG V E
Sbjct: 111 KGVLTRIKGIGEKTADVV-LMSFGHEEFPVDTHVKRVAKRLGLVDGNAYKE--------- 160
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ RL +L + E H LI G+ +C KP C+ CP+ C
Sbjct: 161 ----------VSSRLKELFKGRTREAHMYLILLGRKYCKAKKPLCSECPLSDLC 204
>gi|242279095|ref|YP_002991224.1| HhH-GPD family protein [Desulfovibrio salexigens DSM 2638]
gi|242121989|gb|ACS79685.1| HhH-GPD family protein [Desulfovibrio salexigens DSM 2638]
Length = 217
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL-VREHGSI 476
N K ++ D L + LR +++E+ E IK G M A R+ +FL+ L V I
Sbjct: 46 NVEKAIKNLKENDGLTPQGLRKFSIEELQELIKPSGFFRMKAIRLNNFLDFLDVNSAKCI 105
Query: 477 -DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535
DLE D + ++ LL++ G+G ++ + + L L+ F VD RI R V
Sbjct: 106 TDLE---DAETFELREKLLAVNGIGPETADSILLYALNKPVFVVDAYTRRIFNRHMLVH- 161
Query: 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
E + H L+ Y L P D E H ++ K +C KSKP+C
Sbjct: 162 ----EDIDYHELQDY-----FMDVLDP-----DVEMYNEYHALIVRTAKEWCKKSKPDCE 207
Query: 596 ACPM 599
CP+
Sbjct: 208 NCPL 211
>gi|422696813|ref|ZP_16754764.1| endonuclease III [Enterococcus faecalis TX1346]
gi|315174673|gb|EFU18690.1| endonuclease III [Enterococcus faecalis TX1346]
Length = 215
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDVFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|433462947|ref|ZP_20420515.1| endonuclease III [Halobacillus sp. BAB-2008]
gi|432188084|gb|ELK45302.1| endonuclease III [Halobacillus sp. BAB-2008]
Length = 224
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + IK G+ A+ +K L+ L++ VPP + + L S+ G+
Sbjct: 68 VSLEELQDDIKRIGLFRNKAKNIKKLSETLI-------LQFDGQVPPTQKE--LESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVASVAFGEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L + K+ + + H+++I FG+ C +PNC ACP+ CR
Sbjct: 165 L---MRKIPREEWSDTHHRMIFFGRYHCKAQRPNCEACPLLDLCR 206
>gi|29375731|ref|NP_814885.1| endonuclease III [Enterococcus faecalis V583]
gi|227518409|ref|ZP_03948458.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227552941|ref|ZP_03982990.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229550352|ref|ZP_04439077.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255973123|ref|ZP_05423709.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255976166|ref|ZP_05426752.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256618739|ref|ZP_05475585.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256762163|ref|ZP_05502743.1| endonuclease III [Enterococcus faecalis T3]
gi|256958651|ref|ZP_05562822.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256962250|ref|ZP_05566421.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256965444|ref|ZP_05569615.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|257077995|ref|ZP_05572356.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|257082883|ref|ZP_05577244.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|257085585|ref|ZP_05579946.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|257086509|ref|ZP_05580870.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|257089566|ref|ZP_05583927.1| endonuclease III [Enterococcus faecalis CH188]
gi|257415773|ref|ZP_05592767.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257418983|ref|ZP_05595977.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257422928|ref|ZP_05599918.1| endonuclease III [Enterococcus faecalis X98]
gi|293383279|ref|ZP_06629194.1| endonuclease III [Enterococcus faecalis R712]
gi|293387564|ref|ZP_06632113.1| endonuclease III [Enterococcus faecalis S613]
gi|294781025|ref|ZP_06746377.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|300859914|ref|ZP_07106002.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|307274543|ref|ZP_07555723.1| endonuclease III [Enterococcus faecalis TX2134]
gi|307278810|ref|ZP_07559873.1| endonuclease III [Enterococcus faecalis TX0860]
gi|312903687|ref|ZP_07762863.1| endonuclease III [Enterococcus faecalis TX0635]
gi|312905786|ref|ZP_07764806.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|312909159|ref|ZP_07768018.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|312951406|ref|ZP_07770304.1| endonuclease III [Enterococcus faecalis TX0102]
gi|384512896|ref|YP_005707989.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|384518260|ref|YP_005705565.1| endonuclease III [Enterococcus faecalis 62]
gi|397699542|ref|YP_006537330.1| endonuclease III [Enterococcus faecalis D32]
gi|421512166|ref|ZP_15958979.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|422689556|ref|ZP_16747665.1| endonuclease III [Enterococcus faecalis TX0630]
gi|422691633|ref|ZP_16749666.1| endonuclease III [Enterococcus faecalis TX0031]
gi|422694151|ref|ZP_16752155.1| endonuclease III [Enterococcus faecalis TX4244]
gi|422700613|ref|ZP_16758459.1| endonuclease III [Enterococcus faecalis TX1342]
gi|422705899|ref|ZP_16763690.1| endonuclease III [Enterococcus faecalis TX0043]
gi|422711028|ref|ZP_16767962.1| endonuclease III [Enterococcus faecalis TX0027]
gi|422712347|ref|ZP_16769117.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|422718091|ref|ZP_16774763.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|422721186|ref|ZP_16777781.1| endonuclease III [Enterococcus faecalis TX0017]
gi|422721893|ref|ZP_16778473.1| endonuclease III [Enterococcus faecalis TX2137]
gi|422726706|ref|ZP_16783150.1| endonuclease III [Enterococcus faecalis TX0312]
gi|422729113|ref|ZP_16785518.1| endonuclease III [Enterococcus faecalis TX0012]
gi|422733017|ref|ZP_16789343.1| endonuclease III [Enterococcus faecalis TX0645]
gi|422734872|ref|ZP_16791154.1| endonuclease III [Enterococcus faecalis TX1341]
gi|422739571|ref|ZP_16794747.1| endonuclease III [Enterococcus faecalis TX2141]
gi|424671493|ref|ZP_18108492.1| endonuclease III [Enterococcus faecalis 599]
gi|424678455|ref|ZP_18115294.1| endonuclease III [Enterococcus faecalis ERV103]
gi|424681894|ref|ZP_18118678.1| endonuclease III [Enterococcus faecalis ERV116]
gi|424685054|ref|ZP_18121760.1| endonuclease III [Enterococcus faecalis ERV129]
gi|424687158|ref|ZP_18123808.1| endonuclease III [Enterococcus faecalis ERV25]
gi|424692115|ref|ZP_18128629.1| endonuclease III [Enterococcus faecalis ERV31]
gi|424693250|ref|ZP_18129696.1| endonuclease III [Enterococcus faecalis ERV37]
gi|424697506|ref|ZP_18133833.1| endonuclease III [Enterococcus faecalis ERV41]
gi|424700671|ref|ZP_18136854.1| endonuclease III [Enterococcus faecalis ERV62]
gi|424703642|ref|ZP_18139775.1| endonuclease III [Enterococcus faecalis ERV63]
gi|424712278|ref|ZP_18144470.1| endonuclease III [Enterococcus faecalis ERV65]
gi|424718347|ref|ZP_18147596.1| endonuclease III [Enterococcus faecalis ERV68]
gi|424721223|ref|ZP_18150317.1| endonuclease III [Enterococcus faecalis ERV72]
gi|424725925|ref|ZP_18154614.1| endonuclease III [Enterococcus faecalis ERV73]
gi|424727389|ref|ZP_18156021.1| endonuclease III [Enterococcus faecalis ERV81]
gi|424739690|ref|ZP_18168107.1| endonuclease III [Enterococcus faecalis ERV85]
gi|424751534|ref|ZP_18179562.1| endonuclease III [Enterococcus faecalis ERV93]
gi|428766664|ref|YP_007152775.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|430360541|ref|ZP_19426330.1| endonuclease III [Enterococcus faecalis OG1X]
gi|430369976|ref|ZP_19428832.1| endonuclease III [Enterococcus faecalis M7]
gi|29343192|gb|AAO80955.1| endonuclease III [Enterococcus faecalis V583]
gi|227074087|gb|EEI12050.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227177911|gb|EEI58883.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229304474|gb|EEN70470.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255964141|gb|EET96617.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255969038|gb|EET99660.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256598266|gb|EEU17442.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256683414|gb|EEU23109.1| endonuclease III [Enterococcus faecalis T3]
gi|256949147|gb|EEU65779.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256952746|gb|EEU69378.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256955940|gb|EEU72572.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|256986025|gb|EEU73327.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|256990913|gb|EEU78215.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|256993615|gb|EEU80917.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|256994539|gb|EEU81841.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|256998378|gb|EEU84898.1| endonuclease III [Enterococcus faecalis CH188]
gi|257157601|gb|EEU87561.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257160811|gb|EEU90771.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257164752|gb|EEU94712.1| endonuclease III [Enterococcus faecalis X98]
gi|291079302|gb|EFE16666.1| endonuclease III [Enterococcus faecalis R712]
gi|291083074|gb|EFE20037.1| endonuclease III [Enterococcus faecalis S613]
gi|294451971|gb|EFG20421.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|295112731|emb|CBL31368.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Enterococcus sp. 7L76]
gi|300850732|gb|EFK78481.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|306504481|gb|EFM73688.1| endonuclease III [Enterococcus faecalis TX0860]
gi|306508695|gb|EFM77785.1| endonuclease III [Enterococcus faecalis TX2134]
gi|310628125|gb|EFQ11408.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|310630666|gb|EFQ13949.1| endonuclease III [Enterococcus faecalis TX0102]
gi|310633040|gb|EFQ16323.1| endonuclease III [Enterococcus faecalis TX0635]
gi|311290583|gb|EFQ69139.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|315028111|gb|EFT40043.1| endonuclease III [Enterococcus faecalis TX2137]
gi|315031632|gb|EFT43564.1| endonuclease III [Enterococcus faecalis TX0017]
gi|315034925|gb|EFT46857.1| endonuclease III [Enterococcus faecalis TX0027]
gi|315144668|gb|EFT88684.1| endonuclease III [Enterococcus faecalis TX2141]
gi|315148491|gb|EFT92507.1| endonuclease III [Enterococcus faecalis TX4244]
gi|315150361|gb|EFT94377.1| endonuclease III [Enterococcus faecalis TX0012]
gi|315153677|gb|EFT97693.1| endonuclease III [Enterococcus faecalis TX0031]
gi|315156505|gb|EFU00522.1| endonuclease III [Enterococcus faecalis TX0043]
gi|315158331|gb|EFU02348.1| endonuclease III [Enterococcus faecalis TX0312]
gi|315160901|gb|EFU04918.1| endonuclease III [Enterococcus faecalis TX0645]
gi|315168422|gb|EFU12439.1| endonuclease III [Enterococcus faecalis TX1341]
gi|315171005|gb|EFU15022.1| endonuclease III [Enterococcus faecalis TX1342]
gi|315573746|gb|EFU85937.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|315577515|gb|EFU89706.1| endonuclease III [Enterococcus faecalis TX0630]
gi|315582639|gb|EFU94830.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|323480393|gb|ADX79832.1| endonuclease III [Enterococcus faecalis 62]
gi|327534785|gb|AEA93619.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|397336181|gb|AFO43853.1| endonuclease III [Enterococcus faecalis D32]
gi|401674735|gb|EJS81080.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|402350027|gb|EJU84940.1| endonuclease III [Enterococcus faecalis ERV116]
gi|402351433|gb|EJU86317.1| endonuclease III [Enterococcus faecalis ERV103]
gi|402358521|gb|EJU93189.1| endonuclease III [Enterococcus faecalis 599]
gi|402359907|gb|EJU94527.1| endonuclease III [Enterococcus faecalis ERV129]
gi|402360640|gb|EJU95236.1| endonuclease III [Enterococcus faecalis ERV31]
gi|402365539|gb|EJU99958.1| endonuclease III [Enterococcus faecalis ERV25]
gi|402373403|gb|EJV07480.1| endonuclease III [Enterococcus faecalis ERV62]
gi|402374735|gb|EJV08739.1| endonuclease III [Enterococcus faecalis ERV37]
gi|402376056|gb|EJV10026.1| endonuclease III [Enterococcus faecalis ERV41]
gi|402381314|gb|EJV15023.1| endonuclease III [Enterococcus faecalis ERV65]
gi|402381902|gb|EJV15595.1| endonuclease III [Enterococcus faecalis ERV68]
gi|402384517|gb|EJV18069.1| endonuclease III [Enterococcus faecalis ERV63]
gi|402390268|gb|EJV23623.1| endonuclease III [Enterococcus faecalis ERV73]
gi|402391893|gb|EJV25171.1| endonuclease III [Enterococcus faecalis ERV72]
gi|402396860|gb|EJV29904.1| endonuclease III [Enterococcus faecalis ERV81]
gi|402402961|gb|EJV35657.1| endonuclease III [Enterococcus faecalis ERV85]
gi|402405448|gb|EJV38039.1| endonuclease III [Enterococcus faecalis ERV93]
gi|427184837|emb|CCO72061.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|429512818|gb|ELA02414.1| endonuclease III [Enterococcus faecalis OG1X]
gi|429515703|gb|ELA05213.1| endonuclease III [Enterococcus faecalis M7]
Length = 215
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|229546166|ref|ZP_04434891.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256852805|ref|ZP_05558175.1| endonuclease III [Enterococcus faecalis T8]
gi|307291137|ref|ZP_07571022.1| endonuclease III [Enterococcus faecalis TX0411]
gi|422684523|ref|ZP_16742757.1| endonuclease III [Enterococcus faecalis TX4000]
gi|424759883|ref|ZP_18187541.1| endonuclease III [Enterococcus faecalis R508]
gi|229308690|gb|EEN74677.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256711264|gb|EEU26302.1| endonuclease III [Enterococcus faecalis T8]
gi|306497791|gb|EFM67323.1| endonuclease III [Enterococcus faecalis TX0411]
gi|315030680|gb|EFT42612.1| endonuclease III [Enterococcus faecalis TX4000]
gi|402404286|gb|EJV36916.1| endonuclease III [Enterococcus faecalis R508]
Length = 215
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|339008005|ref|ZP_08640579.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
gi|338775208|gb|EGP34737.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
Length = 221
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I++ G+ A+ ++ L+ E+G +VP + L+ + G+
Sbjct: 67 VSLEELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVP--NKHEELVKLPGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V RI+ RLG+ P P ++ L++ P K
Sbjct: 118 GRKTANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMKKIP------KK 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
W + H+++I FG+ C P C+ CP+ C
Sbjct: 172 DWS-----------DTHHRMIFFGRYHCKAQSPQCDICPLEDVC 204
>gi|13541635|ref|NP_111323.1| endonuclease III [Thermoplasma volcanium GSS1]
gi|14325034|dbj|BAB59960.1| endonuclease III [Thermoplasma volcanium GSS1]
Length = 215
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A+V ++ I + G + A+++ + E+GS VP + D LL
Sbjct: 63 EGLASADVSDVGSIISKVGFWRVKAKKIIMIAQIIRDEYGS-------KVPA--SMDQLL 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G+K+ V L VDT+V RI+ R+GW + PE L+++ P
Sbjct: 114 SLPGVGVKTASVVLAEGLGIPMIAVDTHVFRISHRIGWSSSKT-PEQTAQDLMQIIP--- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K LW + L+ FGK C P C+ C + C ++
Sbjct: 170 ---KDLW-----------IGFNPTLVEFGKAVCRPVSPKCSMCRINEFCEYY 207
>gi|15614261|ref|NP_242564.1| endonuclease III [Bacillus halodurans C-125]
gi|10174315|dbj|BAB05417.1| endonuclease III (DNA repair) [Bacillus halodurans C-125]
Length = 218
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ +K L+ ++G +VP D+ D L+ + G+G
Sbjct: 70 LEELEQDIRSIGLYRNKAKNIKKLCQSLLEQYGG-------EVPQDR--DELVKLAGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + ++ L++ P
Sbjct: 121 KTANVVASVAFGVPAIAVDTHVERVSKRLGICRWKDNVTQVEQTLMKKIP---------- 170
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+D+ ++ H++LI FG+ C P C+ CP+ CR
Sbjct: 171 -----MDEWSIS--HHRLIFFGRYHCKAQNPQCDICPLLDMCR 206
>gi|188997187|ref|YP_001931438.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932254|gb|ACD66884.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 215
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
++++E I +E PD + LLS +G+G K+ V A VD +V RI+
Sbjct: 93 KIIKEISKILVEKFNSKVPDDL-ETLLSFKGVGRKTANLVLSEGFGKPAICVDVHVHRIS 151
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
R+G V + PE + L+++ P +KY W ++++ L+ FG+ C
Sbjct: 152 NRIGLVKTKN-PEETEFKLMKILP-----KKY-WK-----------DINFVLVAFGQTIC 193
Query: 588 TKSKPNCNACPMRGECRH 605
KP C CP+ C H
Sbjct: 194 KPVKPKCKECPIVKYCEH 211
>gi|387772456|ref|ZP_10128400.1| endonuclease III [Haemophilus parahaemolyticus HK385]
gi|386906375|gb|EIJ71110.1| endonuclease III [Haemophilus parahaemolyticus HK385]
Length = 211
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ + E IK G+ N AE + L+ +H I VP D+ D L
Sbjct: 62 EAILALGVEGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNGI-------VPEDR--DALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R++ R G+ P + + E ++ LL++ P
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKNVVE-VEKKLLKVVPAEF 171
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ ++H+ LI G+ C KP C +C + C +
Sbjct: 172 KV-----------------DVHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>gi|222087212|ref|YP_002545747.1| endonuclease III [Agrobacterium radiobacter K84]
gi|221724660|gb|ACM27816.1| endonuclease III [Agrobacterium radiobacter K84]
Length = 259
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I + IK G+ A+ + +L+R+ +VP + ++ L+++ G+G K+
Sbjct: 101 IRDYIKTIGLYRNKAKNVVALSEKLLRDFDG-------EVP--QTREELMTLPGVGRKTA 151
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + H VDT+V RIA RL P + P+ ++ L+++ P
Sbjct: 152 NVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLMKVIP------------- 197
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
DQ LY H+ LI G+ C KP C C + CR
Sbjct: 198 ---DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|193212151|ref|YP_001998104.1| endonuclease III [Chlorobaculum parvum NCIB 8327]
gi|193085628|gb|ACF10904.1| endonuclease III [Chlorobaculum parvum NCIB 8327]
Length = 214
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D EA+ +V +I I+ N A+ + RLV E G DVP +++
Sbjct: 63 DAEAMSRMDVDDIKTIIRPINYYNNKAKNILAMSQRLVDEFGG-------DVP--ASREA 113
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V PVDT+V R++ R+G PE + LL++ P
Sbjct: 114 LESLPGVGRKTANVVLSNAFGVPTMPVDTHVHRVSNRIGLCKTSK-PEQTEEALLKIIP- 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + + H+ L+ G+ C KP C+ CP+ C
Sbjct: 172 ----------------ESRMIDFHHYLVLHGRYTCKAKKPECSKCPIIEAC 206
>gi|300088667|ref|YP_003759189.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528400|gb|ADJ26868.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 224
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 26/184 (14%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
+L +R +E++ I+ G N A ++K + L D+E L+D P + +
Sbjct: 63 ALSAAQIRRMRPEELAPVIRSSGYYNAKASKLKALADWLAGYDD--DIESLKDRDPAEFR 120
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
LL++ G+G ++ + + L L F +D R+ RLG VP + +
Sbjct: 121 RELLAVHGVGPETADSILLYALDVPVFVIDAYTRRLFSRLGIVPPRDTYDE--------- 171
Query: 551 PVLESIQKYLWPRL--CKLDQRT--LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
W RL L+Q+ E H ++ K C +S+P+C C + GECR+
Sbjct: 172 ----------WQRLFETNLEQQAGLFNEYHALIVRHAKEVC-RSRPDCAECCLAGECRYL 220
Query: 607 ASAF 610
+
Sbjct: 221 KRGY 224
>gi|359406392|ref|ZP_09199085.1| endonuclease III [Prevotella stercorea DSM 18206]
gi|357556157|gb|EHJ37776.1| endonuclease III [Prevotella stercorea DSM 18206]
Length = 212
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D ++ A+ E+ E +K N A + + + E+G +VP D D
Sbjct: 61 DARSMAEADEFEVYEYVKSVSYPNAKARHLVELARMIQNEYGG-------EVPHDF--DS 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYP 551
LL + G+G K+ + + A PVDT+V R++ RLG VP P ++ HL++ P
Sbjct: 112 LLRLPGVGRKTANVMLAVAFGEAAMPVDTHVFRVSHRLGLVPRTADTPLKVEQHLVKHIP 171
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ L+ G+ CT K +C C + C
Sbjct: 172 ADD-----------------LAKAHHWLLLHGRYICTSRKAHCEKCEFKAVC 206
>gi|410697701|gb|AFV76769.1| endonuclease III [Thermus oshimai JL-2]
Length = 217
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 28/155 (18%)
Query: 449 IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508
IK G+ A + RLV EHG +VP DK L+ + G+G K+ V
Sbjct: 85 IKRIGLYRTKARNLVALARRLVEEHGG-------EVPRDKKA--LMRLPGVGWKTATVV- 134
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
L L VDT+V R+A RL + PE + L L+P
Sbjct: 135 LGVLGVPGIAVDTHVARLARRL-CLSQAKRPEKIGADLEALFP----------------- 176
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Q +H+ L+ G+ CT KP C ACP+ C
Sbjct: 177 QEDWVFVHHALVLHGRYVCTARKPKCAACPLAPHC 211
>gi|409387026|ref|ZP_11239323.1| Endonuclease III [Lactococcus raffinolactis 4877]
gi|399205796|emb|CCK20238.1| Endonuclease III [Lactococcus raffinolactis 4877]
Length = 214
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D ++L A+V ++ IK G+ A+ +VR I+ E+ ++P DK D
Sbjct: 61 DSQSLASADVSDVENLIKTIGLYRSKAKN-------IVRTAEMIETEFGGEIPRDK--DL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V VDT+V R++ RL V ++ L+++ P
Sbjct: 112 LQTLPGVGRKTANVVLGDAFGIPGIAVDTHVERVSKRLQLVKQSATVTEVEEKLMKVVPE 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E + H++LI FG+ CT P C ACP+ C HF
Sbjct: 172 SEWVVT-----------------HHRLIFFGRYHCTARAPKCVACPVLPYC-HFG 208
>gi|325107269|ref|YP_004268337.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces
brasiliensis DSM 5305]
gi|324967537|gb|ADY58315.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces
brasiliensis DSM 5305]
Length = 231
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ AIK G+ N A+ + F L+ E VP +A+ L+S+ G+G K
Sbjct: 88 EIAAAIKPCGLYNSKAKNIHRFCEVLLSEFDG-------RVPRTRAE--LMSLPGIGRKC 138
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ V+ VDT+V R+ R G L + ++ + L R
Sbjct: 139 ADIVQQFAFDIDVIAVDTHVHRVCNRTG---------------LAVGKTADATARSLEER 183
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+ TL+E H+ LI FGK C P C C + CR++ S
Sbjct: 184 A---PEWTLHEGHFWLIQFGKQICHARTPRCENCSLNHLCRYYRS 225
>gi|307268732|ref|ZP_07550100.1| endonuclease III [Enterococcus faecalis TX4248]
gi|306514860|gb|EFM83407.1| endonuclease III [Enterococcus faecalis TX4248]
Length = 215
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVDEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|294496431|ref|YP_003542924.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
gi|292667430|gb|ADE37279.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
Length = 206
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+V++I IK+ G + A R+K+ L+ E+ S VP + LL + G+
Sbjct: 63 ADVEKIEILIKDVGFYRVKAGRIKEISQILIDEYDS-------QVPASMVE--LLKLPGV 113
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV A VDT+V RI+ RLG V P+ ++ L + PV
Sbjct: 114 GRKTANCVLSYAFLEKAIAVDTHVHRISNRLGLVD-TVTPDQTEIELQKQVPV------S 166
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
W R + EL Q FGK C P C C + C
Sbjct: 167 YW--------REVNELFVQ---FGKTVCKPLSPACEVCAIEDLC 199
>gi|189200344|ref|XP_001936509.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983608|gb|EDU49096.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 522
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL------NRLVREH---------GS 475
S+D+ +R A+ KE+ EAIK G+ ++ ++ +K L N+ RE GS
Sbjct: 241 SVDWNRVRQADQKEVFEAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSDKAPGS 300
Query: 476 -------------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
I L+ L + D A + L G+G K+ CV L L +
Sbjct: 301 ANEAEGEKHAEVAKAEQNIISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 360
Query: 517 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY--PVLESIQKYLWPRLCKLDQRTLYE 574
F VDT+V R+ LGWVP P L + P S + R + Y
Sbjct: 361 FAVDTHVFRLCKWLGWVPPPGDPAGLAPGAKGTFAGPTRNSTYAHCEVR---VPDHLKYP 417
Query: 575 LHYQLITFGKVFCTKSKPNCNA 596
LH LI GK C P C A
Sbjct: 418 LHQLLIRHGKT-C----PRCRA 434
>gi|307273846|ref|ZP_07555068.1| endonuclease III [Enterococcus faecalis TX0855]
gi|306509531|gb|EFM78579.1| endonuclease III [Enterococcus faecalis TX0855]
Length = 215
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLAIAPKCEACPLLYMCQ 206
>gi|52424971|ref|YP_088108.1| Nth protein [Mannheimia succiniciproducens MBEL55E]
gi|52307023|gb|AAU37523.1| Nth protein [Mannheimia succiniciproducens MBEL55E]
Length = 211
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ + E IK G+ N AE + L+ +H S VP D+A L
Sbjct: 62 EAILALGVEGLKEYIKTIGLYNAKAENIIKTCRDLIEKHQS-------QVPEDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R++ R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C +C + C +
Sbjct: 162 KLNKVV-PNEFKVD------VHHWLILLGRYTCIARKPRCGSCIIEDLCEY 205
>gi|302410315|ref|XP_003002991.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
gi|261358015|gb|EEY20443.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
Length = 327
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 447 EAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVEC 506
EAIK G+ + ++ + L + +G+ L+ + D ++A L+ +G+G K+ C
Sbjct: 161 EAIKCGGLAAVKSKVILGILEQAKARYGAYSLDHMFDKTDEEAMRELIGFQGVGPKTASC 220
Query: 507 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 566
V L L +F VDT+V RI LGW P + HL P +
Sbjct: 221 VLLFCLRRESFAVDTHVWRITGLLGWRPKTASRDETYAHLDVRIPDEDK----------- 269
Query: 567 LDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
Y LH L+ GKV C+ C G+
Sbjct: 270 ------YGLHILLVKHGKV--------CDECKAGGK 291
>gi|153853551|ref|ZP_01994931.1| hypothetical protein DORLON_00920 [Dorea longicatena DSM 13814]
gi|149753706|gb|EDM63637.1| endonuclease III [Dorea longicatena DSM 13814]
Length = 208
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAER----MKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
EA A++KE+ + IK G + A+ MKD ++ +G + P + +
Sbjct: 62 EAFADADLKELEQDIKPTGFYHNKAKNIIACMKDIRDKY---NGEV---------PSELE 109
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LLS+ G+G K+ +R H + VDT+V RI+ RLG Q P+ ++ L++
Sbjct: 110 D-LLSLAGVGRKTANVIRGNIYHVPSVVVDTHVKRISNRLGLTKNQD-PDKIEQDLMKEL 167
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P D L+ +H +ITFG+ C+ P C C ++ C+ +
Sbjct: 168 PE---------------DHWILWNIH--IITFGRTICSARSPKCEDCFLQKYCKEY 206
>gi|330811337|ref|YP_004355799.1| DNA lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|423698896|ref|ZP_17673386.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
gi|327379445|gb|AEA70795.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996602|gb|EIK57932.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
Length = 212
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ HGS +VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|425773861|gb|EKV12186.1| HhH-GPD family base excision DNA repair protein [Penicillium
digitatum PHI26]
gi|425782437|gb|EKV20346.1| HhH-GPD family base excision DNA repair protein [Penicillium
digitatum Pd1]
Length = 512
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 38/142 (26%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMK------------------------DFL 466
S++++A+R A VK++ EAIK G+ ++ ++ +K D L
Sbjct: 259 SVNWDAVRQATVKDVFEAIKSGGLADVKSKNLKAILDIVHEDNQARRATLLDSESKIDSL 318
Query: 467 NRLVREHGSIDLEW--------------LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
++LV E D ++ L ++ ++A L+ G+G K+ CV L L
Sbjct: 319 SKLVPEKAETDKQYEIACADQNFLSLNHLHNLSTEEAMTNLIKYPGIGPKTAACVILFCL 378
Query: 513 HHLAFPVDTNVGRIAVRLGWVP 534
F VDT++ R+ LGW+P
Sbjct: 379 QRPCFAVDTHIFRLCRWLGWIP 400
>gi|312136836|ref|YP_004004173.1| endonuclease iii ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
gi|311224555|gb|ADP77411.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
Length = 209
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 28/198 (14%)
Query: 409 ESLRKEVQRNSGKQERSRDRMDSLD-YEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
E++ + ++ ++ S+ D E + A K++ + IK G + A+R+K
Sbjct: 33 ETILSQRTKDENTKKASKKLFSKYDTIEKIANAQEKDLEKLIKCVGFYRVKAKRIKKISK 92
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
L+ ++ VP + + LL + G+G K+ CV + + A PVDT+V R+A
Sbjct: 93 ILINKYDG-------KVPKNLKE--LLKLPGVGRKTANCVLVYGFNEDAIPVDTHVHRVA 143
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
R+G V + PE + L ++ P + W + KL + FGK C
Sbjct: 144 NRIGLVNTKT-PEETEKTLRKIIP------RDYWKEVNKL-----------FVEFGKNIC 185
Query: 588 TKSKPNCNACPMRGECRH 605
+ P CP++ C++
Sbjct: 186 KPTNPKHEKCPIKKFCKY 203
>gi|410454551|ref|ZP_11308486.1| DNA-lyase [Bacillus bataviensis LMG 21833]
gi|409931832|gb|EKN68807.1| DNA-lyase [Bacillus bataviensis LMG 21833]
Length = 213
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++++++ I+ G N+ A+R+K ++ IDL ++ + ++ LLSI+G+G
Sbjct: 66 IEDLAQLIRPSGFFNIKAKRIKSYMAWFKTLEYDIDL--IKKIDKHLLRNELLSIKGIGR 123
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
++ + + L F VD RI RLG+ +PES + I+K L
Sbjct: 124 ETGDVILLYAFDTPIFIVDAYARRIFYRLGY----DMPESYD-------AFRKQIEKEL- 171
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
PR D E H ++ K C K+KP C CP+ G C
Sbjct: 172 PR----DLVLYNEFHALVVEHAKEHC-KAKPICEGCPLLGIC 208
>gi|218883640|ref|YP_002428022.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
gi|218765256|gb|ACL10655.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
Length = 238
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
++A+ L+ + G+G K+ + V L FPVDT++ RI +R+G+ + H+
Sbjct: 129 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYK-----HI 183
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ S YL +LH LIT G+ C KP CN C +R C++
Sbjct: 184 SRFWMDNTSPGNYL-------------DLHLYLITHGRRTCRARKPLCNKCVLRDMCKYG 230
Query: 607 ASAFASAR 614
R
Sbjct: 231 VDTLDDKR 238
>gi|269986417|gb|EEZ92704.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 229
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+ +I + I G + A+ +K N L++E S VP K K L++I G+G
Sbjct: 69 INQIEKLIYPVGFFHTKAKLVKSACNVLIKEFNS-------KVPSTKEK--LMTIPGVGN 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K V + VDT+V RI+ RLG VP PE +L +LESI
Sbjct: 120 KVASLVLEWGFNLPYIAVDTHVNRISQRLGIVPEGTKPEKTEL-------ILESI----- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L+ + +Y + FG+ C P C CP+ C
Sbjct: 168 -----LNPKLRITTNYSFVKFGREICRPINPLCGKCPVYSYC 204
>gi|325106521|ref|YP_004276175.1| endonuclease III [Pedobacter saltans DSM 12145]
gi|324975369|gb|ADY54353.1| endonuclease III [Pedobacter saltans DSM 12145]
Length = 239
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 543
+ P+ KD L + G+G K+ + + H A VDT+V R+A R+G P +++
Sbjct: 104 IVPEDVKD-LQKMPGVGRKTANVISSVIYHAPAMAVDTHVFRVANRIGLTTNAKTPLAVE 162
Query: 544 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L+ P Q ++ H+ LI G+ C P C+ CP+ G C
Sbjct: 163 KQLVAHLP-----------------QDKIHIAHHWLILHGRYICLARSPKCDICPLTGFC 205
Query: 604 RHFASAFASARLALPGPEE 622
+++A + L G E
Sbjct: 206 KYYAQHNTPSALKRKGELE 224
>gi|449328842|gb|AGE95118.1| endonuclease III [Encephalitozoon cuniculi]
Length = 238
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 39/178 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
L E + ++VK I+E IK+ G +N A +K + ++RE G P + K
Sbjct: 90 GLTIERVANSDVKHINECIKKVGFHNRKAANLKK-IAEILREKG----------LPREMK 138
Query: 491 DYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D L+S+ G+G K + LL + H + VDT+V RI+ R+G V + + ES +
Sbjct: 139 D-LISLPGIGNK----MALLYMSHACNRTVGISVDTHVHRISNRIGLVKTRDV-ESTRRE 192
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L + P E W +T+ + L+ FG+ C +P C C +RG C
Sbjct: 193 LERVVPREE------W--------KTINNI---LVGFGQTICVAKRPKCEECCIRGRC 233
>gi|218295273|ref|ZP_03496109.1| endonuclease III [Thermus aquaticus Y51MC23]
gi|218244476|gb|EED11001.1| endonuclease III [Thermus aquaticus Y51MC23]
Length = 217
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I++ G+ A + RL+ ++G +VP DK +
Sbjct: 69 DAKALAAATPEEVEPYIRKIGLYRTKARNLVALARRLLEDYGG-------EVPRDK--EA 119
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + PE + L L+P
Sbjct: 120 LMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCLSEART-PEKIAEDLEALFP- 177
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +H+ L+ G+ CT +P C ACP+ C
Sbjct: 178 -----KDHW-----------VFVHHALVLHGRYVCTARRPRCGACPLAPHC 212
>gi|383785899|ref|YP_005470468.1| DNA-(apurinic or apyrimidinic site) lyase [Fervidobacterium
pennivorans DSM 9078]
gi|383108746|gb|AFG34349.1| endonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 220
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ E L A +E+ + I+ G+ AER+ ++ ++G PD ++
Sbjct: 70 NVEQLAQAKPEELYDLIRPSGLYKEKAERIIAVSKIILEKYGG--------RVPDNLEE- 120
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LLS+ G+G K+ V ++ A VDT+V RI+ RLGWV + PE +
Sbjct: 121 LLSLPGVGRKTANIVLHVSFGQQALAVDTHVHRISNRLGWVNTKT-PEQTE--------- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
E ++K L P L ++ ++ FGK C P C C + C++F
Sbjct: 171 -EELKKILDPNLWG-------PVNGSMVEFGKQICRPISPKCEECFLTACCKYF 216
>gi|21227382|ref|NP_633304.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905743|gb|AAM30976.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 205
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
ANV++I E I++ G + A R+K+ L+ ++ VP D + LL + G+
Sbjct: 63 ANVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------KVPDD--METLLKLPGV 113
Query: 500 GLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
G K+ CV L A VDT+V RI+ RLG V + PE ++ L +L P QK
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGRV-VTKNPEETEMELKKLLP-----QK 167
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Y W + L L+ FG+ C P C C + C
Sbjct: 168 Y-WRHVNIL-----------LVKFGQNVCRPISPRCGICILNDIC 200
>gi|88602750|ref|YP_502928.1| HhH-GPD [Methanospirillum hungatei JF-1]
gi|88188212|gb|ABD41209.1| DNA-3-methyladenine glycosylase III [Methanospirillum hungatei
JF-1]
Length = 226
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D +D + L A I+ I+ N A ++ FL+ + E D+ + +P D+
Sbjct: 60 DLMDADILYQAGQDTIAPLIRSSRYYNQKARKIMTFLSWFL-ETCDGDVSRMASLPTDQV 118
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
++ LL++ G G ++V+ + L L F VD RI R GW E
Sbjct: 119 REELLNLSGFGPETVDSILLYALEKPVFVVDAYTRRIGSRQGW--------------FED 164
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
+ +Q++ RL D + H Q++ G C K+ P C+ CP+R
Sbjct: 165 DASYDQMQEFFMNRLSP-DVPLYNDYHAQIVYLGNKLCKKT-PLCSICPVR 213
>gi|85114220|ref|XP_964657.1| hypothetical protein NCU02035 [Neurospora crassa OR74A]
gi|10303298|emb|CAC10093.1| conserved hypothetical protein [Neurospora crassa]
gi|28926447|gb|EAA35421.1| predicted protein [Neurospora crassa OR74A]
Length = 572
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-------------- 474
+ S+++E + +++++AIK G N A+ +K L+ + E
Sbjct: 376 IGSINWEKVASEPEEKLAQAIKVSGNGNQKAKHIKLILDMVALEMAQMAMENKGTGGKRE 435
Query: 475 -----SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
+++L+ + V D+A L+ G+G+KS CV L L F VDT+V R
Sbjct: 436 VAFSETLNLDHMHTVTKDEAMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRW 495
Query: 530 LGWVP 534
LGWVP
Sbjct: 496 LGWVP 500
>gi|218530896|ref|YP_002421712.1| endonuclease III FCL domain-containing protein [Methylobacterium
extorquens CM4]
gi|218523199|gb|ACK83784.1| Endonuclease III FCL domain protein [Methylobacterium extorquens
CM4]
Length = 254
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A+VKEI I + A R+K L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIDAASVKEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +I G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
VL + W + LY+ H L+ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|227494411|ref|ZP_03924727.1| endonuclease III [Actinomyces coleocanis DSM 15436]
gi|226832145|gb|EEH64528.1| endonuclease III [Actinomyces coleocanis DSM 15436]
Length = 226
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+ +++ + G N A ++++ LV E+ +VP ++ + L + G+
Sbjct: 82 ADHADLASITRVLGFQNKRATQLQELSQALVAEYAG-------EVPANR--EALQKLPGV 132
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V A VDT+VGR+ RLGW + P +++ + +L P Y
Sbjct: 133 GRKTAHVVLGNAFGIPAITVDTHVGRVTTRLGWSQAKT-PLAIEKDIAKLLP------GY 185
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
W LC ++LI G+ C KP C CP++ C A A
Sbjct: 186 DWTLLC-----------HRLIEHGRAICDARKPLCGQCPLQQLCPASADYLA 226
>gi|410459338|ref|ZP_11313089.1| endonuclease III [Bacillus azotoformans LMG 9581]
gi|409930314|gb|EKN67315.1| endonuclease III [Bacillus azotoformans LMG 9581]
Length = 217
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ I+ G+ A+ ++ N L+ E+G + VP D+
Sbjct: 64 DYLAV---SLEELQNDIRSIGLFRNKAKNIQKLCNMLLEEYGGV-------VPKDRLS-- 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + ++ L++ P
Sbjct: 112 LMKLPGVGRKTANVVMSVAYGIPAIAVDTHVERVSKRLGICRWKDSVLEVEETLMKKVP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ LW + H++LI FG+ C +P C CP+ CR
Sbjct: 171 -----EELWS-----------QTHHRLIFFGRYHCKAQRPQCEICPLLDICR 206
>gi|212526396|ref|XP_002143355.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
gi|210072753|gb|EEA26840.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
Length = 449
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 63/208 (30%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN-----RLVR-------------- 471
S+D+ A+R A + E+ EA+K G+ ++ +K LN L R
Sbjct: 234 SVDWNAVRVAPINEVFEAMKSGGLATTKSKYIKGILNMVYEENLARKAAHLKSEEEPGKP 293
Query: 472 -----EHGS---------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
EH S + L+W+ + ++A L+ G+G K+ CV L
Sbjct: 294 GPVGAEHESKAQKEVEIALTDENVLSLDWIHALDKEEAMLELIKYPGIGPKTAACVVLFC 353
Query: 512 LHHLAFPVDTNVGRIAVRLGWVP---LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
L F VDT++ RI LGW+P + + E + LE+ ++
Sbjct: 354 LQRPCFAVDTHIFRICKWLGWLPSSDTKRVTEIMAFSHLEV----------------RIP 397
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNA 596
Y LH LI G KS P C A
Sbjct: 398 DHLKYPLHQLLIRHG-----KSCPRCRA 420
>gi|255037376|ref|YP_003087997.1| endonuclease III [Dyadobacter fermentans DSM 18053]
gi|254950132|gb|ACT94832.1| endonuclease III [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKD 491
D E+L +N +E+ I+ N A+ + LV + H + P +D
Sbjct: 61 DPESLAASNTEEVFTYIRSISYPNNKAKHLVGMARMLVEQFHSEV---------PSTVED 111
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ---PLPESLQLHLLE 548
L + G+G K+ + + A VDT+V R++ RLG VP+ PL +L
Sbjct: 112 -LQKMPGVGRKTANVIASVIFSMPAMAVDTHVFRVSRRLGLVPMTAKTPLAVEREL---- 166
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ I K+L +++ H+ LI G+ CT P C CP+ CR+F
Sbjct: 167 ----VTHIPKHL-----------IHKAHHWLILHGRYVCTARNPQCFQCPLSPFCRYF 209
>gi|406025340|ref|YP_006705641.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404432939|emb|CCM10221.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 212
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + C + + + I+ G+ N A+ + N L+ + S VP D L+
Sbjct: 62 EKIVCLGEERLKQYIRSIGLFNHKAKNIIALSNLLINHYNS-------RVP--NHFDALV 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ V + VDT+V R+A R+G + PE ++ LL
Sbjct: 113 QLPGVGRKTANVVLNCLFNQPTIAVDTHVFRVAKRIG-LAKGITPEKVEQELL------- 164
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
+DQ+ H+ LI G+ C KPNC CP++ C ++ +
Sbjct: 165 ----------AAIDQKWRKHAHHWLILHGRYICKARKPNCTICPIQTYCTYYQKS 209
>gi|392377719|ref|YP_004984878.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
gi|356879200|emb|CCD00104.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
Length = 230
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
A ++ R++ EH +VP D L++ G+G K + A
Sbjct: 104 ARDIRALSRRIITEHDG-------EVP--DTPDALMAFHGVGPKIAALTLAVGFGIPAVA 154
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
VD +V RI R G+V P PE + L+EL P ++ W E++ +
Sbjct: 155 VDVHVHRIVNRWGFVA-APTPERTMVALMELLP------RHYW-----------VEINER 196
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRH 605
L+ FGK CT +P C+ C M CR
Sbjct: 197 LVPFGKWICTGDRPRCSTCAMLSMCRQ 223
>gi|301105551|ref|XP_002901859.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
gi|262099197|gb|EEY57249.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
Length = 287
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 30/176 (17%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL-VREHGSIDLEWLRDVPPDK 488
+ L E ++ + +++SEA+K G + A ++K L R HG D+P +
Sbjct: 109 EGLTIEVVQSVSEEKLSEALKPVGFYHRKAHQLKRVAAILRTRFHG--------DIP--R 158
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ D LL + G+G K + LL + VDT+V R+A RLGW PE + L
Sbjct: 159 SLDELLQLPGIGPKIGRVITLLAWGQVDGIVVDTHVHRLAQRLGWSSTTT-PEDTRKELE 217
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ P K W +L + ++ FG+ CT P+C+ CP+ +C
Sbjct: 218 DWIP------KEHWGKLSLV-----------VVGFGQTVCTAKHPSCSKCPLATKC 256
>gi|313672755|ref|YP_004050866.1| hhh-gpd family protein [Calditerrivibrio nitroreducens DSM 19672]
gi|312939511|gb|ADR18703.1| HhH-GPD family protein [Calditerrivibrio nitroreducens DSM 19672]
Length = 212
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
RN + + + + L E + + E++ I+ G N AER+ F +R + E +
Sbjct: 38 RNVERSIENLKKFELLSPEKILGLDFSELANLIRPSGFYNQKAERLIIF-SRFILEECNG 96
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR--LGWVP 534
D+++L + A+ LL ++G+G ++ + + L H F +D R+ R +GW
Sbjct: 97 DIKYLNKLETADARKRLLLLKGVGPETADSILLYACDHTIFVIDKYTMRMFNRVGMGWSE 156
Query: 535 LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC 594
+ Q +++EL P +I ++ H ++ K +C +SKP C
Sbjct: 157 KYDI---FQKNIMELLPHDLNIYRH---------------YHALIVENSKNYC-RSKPFC 197
Query: 595 NACPMRGECR 604
CP+ C+
Sbjct: 198 EGCPIAKICK 207
>gi|169827624|ref|YP_001697782.1| endonuclease III [Lysinibacillus sphaericus C3-41]
gi|168992112|gb|ACA39652.1| Probable endonuclease III [Lysinibacillus sphaericus C3-41]
Length = 220
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ RL+ E+ ++P ++ L+++ G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQALCQRLLDEYNG-------EIPA--TREALVTLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + + V E+I K
Sbjct: 121 KTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKD----------SVLEVEETIMK--- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K + H+QLI FG+ C P C+ACP+ +CR
Sbjct: 168 ----KTPMDKWSKTHHQLIFFGRYHCKAQNPGCHACPLLSDCR 206
>gi|407461561|ref|YP_006772878.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045183|gb|AFS79936.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
Length = 215
Score = 53.9 bits (128), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +K++ + IK G ++ ++R ++ ID ++ VP D + L+ + G+
Sbjct: 71 AKLKDVEKIIKPIGFYHVKSKR-------IIEVAKIIDSKYKGKVPEDL--ETLVELPGV 121
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ R+G V + PE + L++
Sbjct: 122 GRKTANCVLVYAFEKPAIPVDIHVHRISNRIGLVDTKN-PEETEQELMK----------- 169
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
K+D++ +++ + +G+ C P C+ C ++ C+ + S
Sbjct: 170 ------KIDKKFWIDINDTFVMYGQNICKPISPMCDVCKIKRNCKFYKS 212
>gi|19173415|ref|NP_597218.1| ENDONUCLEASE III [Encephalitozoon cuniculi GB-M1]
gi|74621135|sp|Q8SRB8.1|NTH1_ENCCU RecName: Full=Endonuclease III homolog; AltName: Full=DNA-(apurinic
or apyrimidinic site) lyase
gi|19171004|emb|CAD26394.1| ENDONUCLEASE III [Encephalitozoon cuniculi GB-M1]
Length = 238
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 39/178 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
L E + ++VK I+E IK+ G +N A +K + ++RE G P + K
Sbjct: 90 GLTIERVANSDVKHINECIKKVGFHNRKAANLKK-IAEILREKG----------LPREMK 138
Query: 491 DYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D L+S+ G+G K + LL + H + VDT+V RI+ R+G V + + ES +
Sbjct: 139 D-LISLPGIGNK----MALLYMSHACNRTVGISVDTHVHRISNRIGLVRTRDV-ESTRRE 192
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L + P E W +T+ + L+ FG+ C +P C C +RG C
Sbjct: 193 LERVVPRKE------W--------KTINNI---LVGFGQTICVAKRPRCEECCIRGRC 233
>gi|365127857|ref|ZP_09340279.1| endonuclease III [Subdoligranulum sp. 4_3_54A2FAA]
gi|363623787|gb|EHL74889.1| endonuclease III [Subdoligranulum sp. 4_3_54A2FAA]
Length = 221
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A I IK G+ A + N L+RE+G VP +A + LL
Sbjct: 63 EALAAAGPDAIEAIIKPCGLGKSKARDLAGMANMLLREYGG-------KVP--QAMEDLL 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G KS +R H A DT+ R+A R+G+V P ++ L+++ P E
Sbjct: 114 RLPGVGRKSANLIRGDIFHLPAVVADTHCIRMANRIGFVTDTTDPVQVERALVKVLPPEE 173
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
S + ++ + G+V CT K C C ++ CR
Sbjct: 174 S-----------------NDFCHRCVMHGRVVCTARKALCEVCCLQDVCR 206
>gi|393796716|ref|ZP_10380080.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 437 LRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSI 496
L A K++ + IK G ++ ++R ++ I+ ++ VP + K L+ +
Sbjct: 27 LASAKTKDVEKIIKSIGFYHVKSKR-------IIEVAKIINSKYKGKVPDNLEK--LVEL 77
Query: 497 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 556
G+G K+ CV + A PVD +V RI+ RLG V + PE + L+ + P
Sbjct: 78 PGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVNTKT-PEETEQELMRIIP----- 131
Query: 557 QKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
K W +++ + +G+ C P CN C ++ C+ + +
Sbjct: 132 -KKFW-----------IDINDTFVMYGQNICKPISPMCNVCKIKNNCKFYKT 171
>gi|393201411|ref|YP_006463253.1| EndoIII-related endonuclease [Solibacillus silvestris StLB046]
gi|406665654|ref|ZP_11073426.1| Endonuclease III [Bacillus isronensis B3W22]
gi|327440742|dbj|BAK17107.1| predicted EndoIII-related endonuclease [Solibacillus silvestris
StLB046]
gi|405386519|gb|EKB45946.1| Endonuclease III [Bacillus isronensis B3W22]
Length = 219
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ I+ G+ A+ ++ RL+ E+G +VP +++ L+++ G+
Sbjct: 68 VSLEELQNDIRSIGLYRNKAKNIQLLCARLINEYGG-------EVPA--SREELVTLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + ++ +++ P+
Sbjct: 119 GRKTANVVLSVAFDIPAMAVDTHVERVSKRLGLCRWKDSVLEVEETIMKKTPIER----- 173
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W R H+Q+I FG+ C P C CP+ +CR
Sbjct: 174 -WSRA-----------HHQIIFFGRYHCKAQNPGCGTCPLLDDCR 206
>gi|429214593|ref|ZP_19205756.1| endonuclease III [Pseudomonas sp. M1]
gi|428154879|gb|EKX01429.1| endonuclease III [Pseudomonas sp. M1]
Length = 212
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V +SE IK G+ N A+ + + L+ +HGS VP ++ L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRILIEKHGS-------KVPENRED--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R+A R P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTNIAPGKNVLE-VERKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|325860068|ref|ZP_08173194.1| endonuclease III [Prevotella denticola CRIS 18C-A]
gi|325482353|gb|EGC85360.1| endonuclease III [Prevotella denticola CRIS 18C-A]
Length = 234
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+E+ E +K N A+ + + LV + G +VP D D
Sbjct: 80 DAKTMAKATVEEVLEYVKSVSYPNAKAKHLVEMSKMLVEKFGG-------EVPSDP--DA 130
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYP 551
L+ + G+G K+ ++ + VDT+V R++ RLG VP P ++ +L++ P
Sbjct: 131 LVMLPGVGRKTANVIQAVWFGKPTLAVDTHVYRVSHRLGLVPSTANTPRKVEDYLMKNIP 190
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + + H+ ++ G+ C +KP+C CP C
Sbjct: 191 TEE-----------------VSDAHHWILLHGRYICKSAKPDCEHCPFDDIC 225
>gi|227528843|ref|ZP_03958892.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
gi|227351236|gb|EEJ41527.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
Length = 213
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K V + AFPVDT+V R+A RLG V +P LQ+ +
Sbjct: 112 LTSLAGVGRKVANVVLAECFNIPAFPVDTHVSRVARRLGMV--KPNATVLQIE----KRL 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
E++ K W LD H+ +I FG+ CT P C CP+ C++
Sbjct: 166 KEAVPKDEW-----LDA------HHAMIFFGRYQCTAKNPKCTKCPLLPICKY 207
>gi|393796715|ref|ZP_10380079.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 27/173 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A K++ + IK G ++ ++R ++ I+ ++ VP + K L+ + G+
Sbjct: 30 AKTKDVEKIIKSIGFYHVKSKR-------IIEVAKIINSKYKGKVPDNLEK--LVELPGV 80
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV + A PVD +V RI+ RLG V + PE + L+ + P K
Sbjct: 81 GRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVDTKT-PEETEQELMRIIP------KK 133
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
W +++ + +G+ C P C+ C ++ +C+ + + AS
Sbjct: 134 FW-----------IDINDTFVMYGQNICKPISPMCSVCKIKNDCKFYKTKNAS 175
>gi|160937835|ref|ZP_02085194.1| hypothetical protein CLOBOL_02727 [Clostridium bolteae ATCC
BAA-613]
gi|158439274|gb|EDP17027.1| hypothetical protein CLOBOL_02727 [Clostridium bolteae ATCC
BAA-613]
Length = 273
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E A++KE+ + I G +M A+ + LV G +VP + + L
Sbjct: 127 EKFAAADLKELEQDIHSIGFYHMKAKNIIACCRDLVERFGG-------EVP--RTIEELT 177
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P
Sbjct: 178 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEEE-PEKIEYDLMKVLPK-- 234
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D L+ +H +IT G+ C +P C C +R EC
Sbjct: 235 -------------DHWILWNIH--IITLGRTICIARRPKCCECFLREEC 268
>gi|398989592|ref|ZP_10692829.1| endonuclease III [Pseudomonas sp. GM24]
gi|399015076|ref|ZP_10717352.1| endonuclease III [Pseudomonas sp. GM16]
gi|398109087|gb|EJL99026.1| endonuclease III [Pseudomonas sp. GM16]
gi|398147214|gb|EJM35929.1| endonuclease III [Pseudomonas sp. GM24]
Length = 212
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HGS+ VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHGSV-------VP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VENKLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|325663087|ref|ZP_08151537.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470541|gb|EGC73771.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 275
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNV 523
G +DL+ +R +P KAK LL + G+G K +C+ L LHHL AFP+DT++
Sbjct: 183 GEVDLDAIRHLPYAKAKKELLKLFGVGEKVADCICLFALHHLQAFPIDTHI 233
>gi|375084054|ref|ZP_09731064.1| endonuclease III [Thermococcus litoralis DSM 5473]
gi|374741220|gb|EHR77648.1| endonuclease III [Thermococcus litoralis DSM 5473]
Length = 237
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PDK ++ L+ + G+G K V PVDT+V RI+ RLG P + PE ++ +
Sbjct: 125 PDKIEE-LMKLPGIGRKCANIVLAYGFGKQTIPVDTHVNRISKRLGLAPPKVSPEKVEEY 183
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L +L P K LW +Y +++ ++ GK C P C CP++ C
Sbjct: 184 LKQLIP------KDLW----------IY-VNHAMVDHGKRICKPINPKCTECPLQDLC 224
>gi|123505745|ref|XP_001329048.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121911998|gb|EAY16825.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 238
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQP 537
D+P K L S G+G+K + L + H + VD +V RI+ LGWV +
Sbjct: 120 DIP--KTLKELTSFNGVGVK----MGTLAMAHCWGEQIGIGVDVHVHRISNLLGWVKTKK 173
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
P+ +L L ++ P K +W E+++ L+ FG+ C KP C+ C
Sbjct: 174 -PDDTELALQKILP------KEIWS-----------EVNHTLVGFGQTICDAKKPKCDEC 215
Query: 598 PMRGECRHFASAFAS 612
P++ C AS
Sbjct: 216 PIKDTCPALQRGSAS 230
>gi|440227974|ref|YP_007335065.1| endonuclease III [Rhizobium tropici CIAT 899]
gi|440039485|gb|AGB72519.1| endonuclease III [Rhizobium tropici CIAT 899]
Length = 259
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I E IK G+ A+ + +L+ + G +VP + ++ L+++ G+G K+
Sbjct: 101 IREYIKTIGLYRNKAKNVVALSEKLITDFGG-------EVP--RTREELITLPGVGRKTA 151
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + VDT++ RIA RL P + P+ ++ L+++ P
Sbjct: 152 NVVLSMAFGQATMAVDTHIFRIANRLLLAPGK-TPDEVEHRLMKIIP------------- 197
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
DQ LY H+ LI G+ C KP C C + CR
Sbjct: 198 ---DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|46580743|ref|YP_011551.1| HhH-GPD family DNA repair protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601969|ref|YP_966369.1| HhH-GPD family protein [Desulfovibrio vulgaris DP4]
gi|387154013|ref|YP_005702949.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
gi|46450163|gb|AAS96811.1| DNA repair protein, HhH-GPD family [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562198|gb|ABM27942.1| DNA-3-methyladenine glycosylase III [Desulfovibrio vulgaris DP4]
gi|311234457|gb|ADP87311.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
Length = 226
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP---DKA 489
D AL A+ + + I+ G M R++D + E + DL+ L D
Sbjct: 64 DVGALLAASPQLVEACIRPSGYFRMKTTRLRDLM-LFFDEACAGDLDALSASAGEDGDAL 122
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ---LHL 546
++ LLS++G+G ++ + + L H +F VD RI R G +P + ++ + +
Sbjct: 123 RERLLSVKGIGPETADSILLYAFGHPSFVVDAYTRRILSRHGLLPEDVHYDEMRDFFMDV 182
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
L+ PVL + E H ++ K +C KS+P+C ACP+
Sbjct: 183 LDPDPVLYN------------------EFHALIVRVAKGWCHKSRPDCAACPL 217
>gi|422868162|ref|ZP_16914710.1| endonuclease III [Enterococcus faecalis TX1467]
gi|329576491|gb|EGG58001.1| endonuclease III [Enterococcus faecalis TX1467]
Length = 215
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V EI IK G+ A+ +K +L+ +VP + +D L+
Sbjct: 63 EALAAAPVLEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW + H+ +I FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|163852137|ref|YP_001640180.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
gi|163663742|gb|ABY31109.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
Length = 254
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A+V+EI I + A R+K L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +I G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
VL + W + LY+ H L+ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPTCGRCVLLDIC 244
>gi|388543463|ref|ZP_10146754.1| endonuclease III [Pseudomonas sp. M47T1]
gi|388278775|gb|EIK98346.1| endonuclease III [Pseudomonas sp. M47T1]
Length = 212
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A + + LV HG +VP D+ + L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLYNSKARNVIEACRMLVELHGG-------EVPQDR--ESLEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E ++ +LL+ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVIE-VEKNLLKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++YL LD H+ LI G+ C KP C +C + C
Sbjct: 169 -RQYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|398850623|ref|ZP_10607324.1| endonuclease III [Pseudomonas sp. GM80]
gi|398248446|gb|EJN33860.1| endonuclease III [Pseudomonas sp. GM80]
Length = 212
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HGS +VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHGS-------EVP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|94268173|ref|ZP_01291108.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
gi|93451700|gb|EAT02475.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
Length = 217
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E++ I+ G N+ A R+++ L R+ EH S L + LL I+G+G ++
Sbjct: 75 ELAALIRPAGYYNIKAGRLQNLLGRIHAEHDS--LAAFLAQQSTTLRRQLLEIKGIGPET 132
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ + L F VDT RI R G +P + +Q + P
Sbjct: 133 ADSIMLYAAQRPVFVVDTYTHRIFSRHGLLPEEADYHQVQEIFHDALPA----------- 181
Query: 564 LCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCNACPM 599
+ LY E H ++ GK +C KS P C CP+
Sbjct: 182 -----EAPLYNEYHALIVRLGKEYCRKSNPRCPTCPL 213
>gi|120553864|ref|YP_958215.1| endonuclease III [Marinobacter aquaeolei VT8]
gi|120323713|gb|ABM18028.1| endonuclease III [Marinobacter aquaeolei VT8]
Length = 212
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + L+ +HGS +VP ++ L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGS-------EVP--ARREDLE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V A VDT++ R++ R G P + + E ++ LL L P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKNVLE-VEKRLLRLVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ CT KP C AC + C
Sbjct: 169 --------------KEFLMDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|357454617|ref|XP_003597589.1| Repressor of silencing 2b [Medicago truncatula]
gi|355486637|gb|AES67840.1| Repressor of silencing 2b [Medicago truncatula]
Length = 136
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 395 KRKADGEKKNAIDW-ESLRKEVQRN-------------SGKQERSRDRMDSLDYEALRCA 440
K + G KN +++ SL+ ++Q + +GK+E++ MD L +EA+ A
Sbjct: 29 KASSSGSSKNKLEFFNSLKAKLQLSILTFKNIHAQAAKAGKREKTEMTMDFLYWEAMSRA 88
Query: 441 NVKEISEAIKERGMNNMLAERMK-DFLNRLVREHGSIDLEWLRDVPPD 487
NV EI+E K+ L + +LN LV H + DL WLRDV PD
Sbjct: 89 NVNEIAEHSKKEAWITCLQNLFRVSYLNLLVDAHRATDLVWLRDVSPD 136
>gi|121703826|ref|XP_001270177.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
gi|119398321|gb|EAW08751.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
Length = 465
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--------------- 475
S++++A+R A +K++ EAIK G+ ++ ++ +K L+ + E+ +
Sbjct: 244 SVNWDAVRQAPLKDVFEAIKRGGLADVKSKNLKAILDMVYEENQARRNILVEGEPGESAN 303
Query: 476 --------------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
+ L L + ++A L+ G+G K+ CV L L
Sbjct: 304 VKLKTEGAKEYEIACADQNFLSLNHLHHLSTEEAMTELVKYPGIGPKTAACVLLFCLQRP 363
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI+ LGWVP E LE+ ++ Y L
Sbjct: 364 CFAVDTHIFRISKWLGWVPAGKATEVTAFSHLEV----------------RIPDHLKYSL 407
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H I GK C P C A
Sbjct: 408 HQLFIRHGKT-C----PRCRA 423
>gi|409095774|ref|ZP_11215798.1| endonuclease III [Thermococcus zilligii AN1]
Length = 242
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E + ++E+ E ++++G+ L + +++ R I LE P+ +
Sbjct: 71 DIETIAATPIEEMQEFLRKQGVG--LWKTKGEWIVRA----SQILLEKYNGKVPEDINE- 123
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P PE ++ +L L P
Sbjct: 124 LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPGVAPEKVEEYLAGLIP- 182
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + +Y +++ ++ G+ C KP C+ CP+R C
Sbjct: 183 ---------------EDKWIY-VNHAMVDHGRSICRPIKPKCDECPLRELC 217
>gi|18977601|ref|NP_578958.1| glycosylase [Pyrococcus furiosus DSM 3638]
gi|397651727|ref|YP_006492308.1| endonuclease III [Pyrococcus furiosus COM1]
gi|18893320|gb|AAL81353.1| glycosylase putative; mutY-nth family [Pyrococcus furiosus DSM
3638]
gi|393189318|gb|AFN04016.1| endonuclease III [Pyrococcus furiosus COM1]
Length = 225
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P+ PE ++ L L PV
Sbjct: 127 LMKLPGIGRKCANIVLAYGFGKPAIPVDTHVYRISRRLGLAPINSTPEKVEEILKTLIPV 186
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E I +++ ++ GK C KP C CP+ C
Sbjct: 187 EEWIY-----------------VNHAMVDHGKSICRPIKPKCELCPLNELC 220
>gi|347525379|ref|YP_004832127.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
gi|345284338|gb|AEN78191.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
Length = 213
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
K ++ L+ + G+G K+ AF VDT+V R+A RL V +P L++
Sbjct: 107 KTREELMDLTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIE-- 162
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
++E + + W E H+ LI +G+ C KP C CP+ EC++F
Sbjct: 163 --RQLMEQVDESRW-----------IEAHHLLIAWGRNQCLARKPKCETCPLSFECKYF 208
>gi|378952456|ref|YP_005209944.1| hypothetical protein PSF113_4559 [Pseudomonas fluorescens F113]
gi|359762470|gb|AEV64549.1| Nth [Pseudomonas fluorescens F113]
Length = 212
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + V+ +SE IK G+ N A+ + + L+ HGS +VP + ++ L
Sbjct: 62 ETIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|418517133|ref|ZP_13083300.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706190|gb|EKQ64653.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 357
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLWP----RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLAIIHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER +V++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATVLL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + + D YE DE+P I + ++LQ + K+ L+
Sbjct: 268 SLWTLPQAETESGMRAWFAAHIDGNYERADEMPPIVHAFSHYRLHLQPWRLRKVALR 324
>gi|302530869|ref|ZP_07283211.1| endonuclease III [Streptomyces sp. AA4]
gi|302439764|gb|EFL11580.1| endonuclease III [Streptomyces sp. AA4]
Length = 253
Score = 53.1 bits (126), Expect = 6e-04, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+ E+ E ++ G A + LV +G +VP K D L+++ G+
Sbjct: 85 ADRAELEEYLRTTGFFRAKANSLMGLGAALVERYGG-------EVP--KKLDDLVTLPGV 135
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V VDT+ GR+ R GW + P ++ + EL P E
Sbjct: 136 GRKTANVVLGNAFDVPGITVDTHFGRLVRRWGWTAEED-PVKVEHAVGELIPRKE----- 189
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA---FASARLA 616
W L +++I G+ C KP C ACP+R +C F + F A
Sbjct: 190 -WTMLS-----------HRVIFHGRRVCHARKPACGACPLRKDCPSFGAGPTEFEVAAKL 237
Query: 617 LPGPEEKSIV 626
+ GPE+ I+
Sbjct: 238 VKGPEKDHIL 247
>gi|51245760|ref|YP_065644.1| endonuclease III [Desulfotalea psychrophila LSv54]
gi|50876797|emb|CAG36637.1| probable endonuclease III [Desulfotalea psychrophila LSv54]
Length = 206
Score = 53.1 bits (126), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
L+Y+AL K ++E IK G N+ A R+ + L + +G ++ L +A+
Sbjct: 47 LNYDALLALPEKALAELIKPAGFFNVKAARLGNLLVMIAENYGG-KIDALLADELGQARQ 105
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL +RG+G ++ + + L F +D+ RI R V + +++Q +
Sbjct: 106 ALLKVRGVGEETADAILLYAAGKPIFVIDSYTHRIFSRHNMVDEETDYQTMQKTFMA--- 162
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG--EC 603
+I++ + E H ++ K FC K+KP C CP+ G EC
Sbjct: 163 ---NIEE---------EASIFNEYHALIVMTAKKFCKKNKPLCPNCPLYGLNEC 204
>gi|409417881|ref|ZP_11257900.1| endonuclease III [Pseudomonas sp. HYS]
Length = 212
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +H S VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIEQHES-------RVP--ETREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E V +
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVLE-----------VEK 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++ K++ P+ LD H+ LI G+ C KP C +C + C +
Sbjct: 162 ALMKFV-PKAYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|407363495|ref|ZP_11110027.1| endonuclease III [Pseudomonas mandelii JR-1]
Length = 212
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HG +VP ++ L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--HTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E +++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEMKLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 -KQYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|336463475|gb|EGO51715.1| hypothetical protein NEUTE1DRAFT_89368 [Neurospora tetrasperma FGSC
2508]
gi|350297308|gb|EGZ78285.1| DNA glycosylase [Neurospora tetrasperma FGSC 2509]
Length = 381
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-------------- 474
+ S+++E + +++++AIK G N A+ +K L+ + E
Sbjct: 185 VGSINWEKVASEPEEKLAQAIKVSGNGNQKAKHIKLILDMVALEMAQLAMENNGTGGKRE 244
Query: 475 -----SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
+++L+ + V D+A L+ G+G+KS CV L L F VDT+V R
Sbjct: 245 VAFPETLNLDHMHTVTKDEAMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRW 304
Query: 530 LGWVP 534
LGWVP
Sbjct: 305 LGWVP 309
>gi|195437932|ref|XP_002066893.1| GK24310 [Drosophila willistoni]
gi|194162978|gb|EDW77879.1| GK24310 [Drosophila willistoni]
Length = 351
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWV--PLQPLPESL 542
PD KD L+ + G+G K + H + VD +V RI+ RLGW+ P + PE
Sbjct: 237 PDNVKD-LIGLPGVGPKMAHICMSVAWHKITGIGVDVHVHRISNRLGWLKTPTKE-PEQT 294
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+L L + P K LW E+++ + FG+ CT KPNC C R
Sbjct: 295 RLGLEKWLP------KSLW-----------SEVNHLFVGFGQTICTPVKPNCAQCLNRDV 337
Query: 603 C 603
C
Sbjct: 338 C 338
>gi|153808497|ref|ZP_01961165.1| hypothetical protein BACCAC_02791 [Bacteroides caccae ATCC 43185]
gi|423219425|ref|ZP_17205921.1| endonuclease III [Bacteroides caccae CL03T12C61]
gi|149128819|gb|EDM20036.1| endonuclease III [Bacteroides caccae ATCC 43185]
gi|392625320|gb|EIY19389.1| endonuclease III [Bacteroides caccae CL03T12C61]
Length = 225
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL + + E I+ N A+ + LV E S PD +D L+
Sbjct: 63 EALAATTPEVVFEYIRSVSYPNNKAKHLVGMAKMLVNEFNS--------QVPDNMED-LI 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPESLQLHLLELYPVL 553
+ G+G K+ ++ + H A VDT+V R++ R+G VP P S++ L++ P
Sbjct: 114 KLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEKELMKNIP-- 171
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613
++ + H+ LI G+ C P C+ C ++ C++F + +
Sbjct: 172 ---------------EKLVPIAHHWLILHGRYVCQARTPKCDTCGLQMMCKYFCNTYKVT 216
Query: 614 RLA 616
+ A
Sbjct: 217 KEA 219
>gi|124027163|ref|YP_001012483.1| EndoIII-related endonuclease [Hyperthermus butylicus DSM 5456]
gi|123977857|gb|ABM80138.1| predicted EndoIII-related endonuclease [Hyperthermus butylicus DSM
5456]
Length = 242
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 417 RNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
RNS + M + EA+ A + EAI+ G+ A +++ R++ G
Sbjct: 60 RNSIRAYLQLREMVGVSPEAVLSAPEDRLIEAIRPAGLARQKARALREAARRILEAGGE- 118
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
+ L ++P + +++LLSI G+G K+ + L F VDT+ RIA R G V +
Sbjct: 119 --KVLLEMPWRELREFLLSIPGVGKKTADVFLQLVRKAPVFAVDTHAARIAKRWGLVGEK 176
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
+ LLE + S H LI G+ +C P C+
Sbjct: 177 AGYDETSRALLEFFGPERS-----------------ENAHRLLIALGRTYCRARNPRCDV 219
Query: 597 CPMRGEC 603
CP+R C
Sbjct: 220 CPLRDIC 226
>gi|121997381|ref|YP_001002168.1| HhH-GPD family protein [Halorhodospira halophila SL1]
gi|121588786|gb|ABM61366.1| HhH-GPD family protein [Halorhodospira halophila SL1]
Length = 234
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD AL A+ +E++ AI+ G N+ R+++ ++E ++ R + ++
Sbjct: 70 LDPVALIEADPEEVATAIRPAGYFNVKTRRLRNLCITYLQEGCMEGMQLQRT---EALRE 126
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL++ G+G ++ + + L H F VD RI RLGW+ E L+
Sbjct: 127 KLLAVNGVGRETADDILLYAFHRPVFVVDAYTRRILQRLGWIQGDEGYERLR-------- 178
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
++ L P + ELH Q++ GK C + P C CP+
Sbjct: 179 --GGVEAALGPNTAAFN-----ELHAQIVALGKDTC-RPTPRCPDCPL 218
>gi|266619530|ref|ZP_06112465.1| endonuclease III [Clostridium hathewayi DSM 13479]
gi|288868941|gb|EFD01240.1| endonuclease III [Clostridium hathewayi DSM 13479]
Length = 217
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + I G +M A+ + L+ G VP + + L S+ G+
Sbjct: 76 ADLKELEKDIHSIGFYHMKAKNIISCCQGLLERFGG-------QVP--RTIEELTSLAGV 126
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R H + VDT+V RI+ +LG+ + PE +++ L+++ P I
Sbjct: 127 GRKTANVIRGNIYHEPSIVVDTHVKRISRKLGFAKAED-PEKIEMELMKVLPKEHWI--- 182
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LW + Q+IT G+ C P C C +R C
Sbjct: 183 LW--------------NIQIITLGRSICFARSPKCKECFLREYC 212
>gi|420236383|ref|ZP_14740869.1| endonuclease III [Parascardovia denticolens IPLA 20019]
gi|391880559|gb|EIT89050.1| endonuclease III [Parascardovia denticolens IPLA 20019]
Length = 318
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
AL AN E++E I G A+ N L+ G +VP + + L +
Sbjct: 166 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 216
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ + FPVDT+V R+ RL W + + PV +
Sbjct: 217 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHW--------RSDWNKTKDDPV--A 266
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
I+K + + R +L ++LI FG+ C KP C CP+R C F
Sbjct: 267 IEKEVTAAFEPTEWR---DLSHRLIDFGRDTCHARKPECLICPLRDTCPSFG 315
>gi|87312107|ref|ZP_01094213.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
gi|87285203|gb|EAQ77131.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
Length = 221
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V+E++E I+ G + A+R+++ + +V H S DLE + D ++ LL++ G+G
Sbjct: 68 VEELAEIIRPAGYYRLKAKRLQNLMRYVVDVH-SGDLEAMFACSVDSLREDLLALNGIGP 126
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
++ + + L + F VDT R+ R GW+ + +Q + P
Sbjct: 127 ETADAILLYAGNLPTFVVDTYTSRVLKRHGWIEQEADYHQIQDQFVSQLPE--------- 177
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
D E H L+ G C K+ P C CP+
Sbjct: 178 ------DVALFNEYHALLVRVGNGHCRKT-PKCETCPL 208
>gi|440292608|gb|ELP85795.1| endonuclease III, putative [Entamoeba invadens IP1]
Length = 236
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + +++ + + IK G ++R+K+ + ++ VP D L
Sbjct: 83 EIINHTSLETLQKCIKMVGFAKTKSKRLKECCKIFIEKYDG-------KVP--STFDELC 133
Query: 495 SIRGLGLKSVECVRLLTLH-HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
++ G+G K + + H+A PVDT+V I+ RL W PES ++ L E P
Sbjct: 134 ALPGVGTKIASLILAIAFDCHVAIPVDTHVFTISNRLEWAD-ATTPESTRIQLEEWLP-- 190
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
K W K+ L++FG+ CTK P C+ CP++
Sbjct: 191 ----KDKWSTFNKV-----------LVSFGQCCCTKKSPKCSECPLQ 222
>gi|255994514|ref|ZP_05427649.1| endonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993227|gb|EEU03316.1| endonuclease III [Eubacterium saphenum ATCC 49989]
Length = 211
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A+V ++ + I GM + ++ + N+L ++G DVP + + L
Sbjct: 62 EALAKADVNDVMDIIHTIGMYKVKSKNIIALANKLQNDYGG-------DVP--SSYEELE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ VR + + + VDT+V R R+G+ + + ++ L+++ P
Sbjct: 113 SLPGVGRKTANVVRAVGFNIPSLAVDTHVFRTGKRIGFSNGNTV-DKVERDLMKIIP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
K W R H+ LI G+ CT P CN C + C +
Sbjct: 169 ---KKRWIRA-----------HHSLIFHGRNLCTARNPKCNLCDIMKYCEY 205
>gi|298675584|ref|YP_003727334.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
gi|298288572|gb|ADI74538.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
Length = 203
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
EI IK G + +R+K ++ E+ G + PD D LL + G+G K
Sbjct: 67 EIESLIKNVGFYRVKTQRIKQISEMILDEYDGQV---------PDNLND-LLKLPGVGRK 116
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ CV A VDT+V RI+ RLG V + PE + L ++ P + LW
Sbjct: 117 TANCVLTYAFSKKAIAVDTHVHRISNRLGLVETKT-PEKTEKDLKKIVP------ENLWN 169
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ +L + FG+ C P C+ C + C
Sbjct: 170 KINEL-----------FVRFGQNTCRPVSPRCDVCVLNDTC 199
>gi|407978795|ref|ZP_11159622.1| endonuclease III [Bacillus sp. HYC-10]
gi|407414666|gb|EKF36301.1| endonuclease III [Bacillus sp. HYC-10]
Length = 220
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ L+ E+G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLSKMLIEEYGG-------EVPRDR--DELMKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE +++ L
Sbjct: 121 KTANVVVSVAFGIPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEQTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C +P C +CP+ CR
Sbjct: 167 KKVPKEDWSVT---HHRLIFFGRYHCKAQRPQCESCPLLDMCR 206
>gi|398857977|ref|ZP_10613672.1| endonuclease III [Pseudomonas sp. GM79]
gi|399001819|ref|ZP_10704528.1| endonuclease III [Pseudomonas sp. GM18]
gi|398126760|gb|EJM16186.1| endonuclease III [Pseudomonas sp. GM18]
gi|398239983|gb|EJN25678.1| endonuclease III [Pseudomonas sp. GM79]
Length = 212
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HG +VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREALEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KEYLLDAHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|374324412|ref|YP_005077541.1| endonuclease III [Paenibacillus terrae HPL-003]
gi|357203421|gb|AET61318.1| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Paenibacillus terrae HPL-003]
Length = 224
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ + + L+ ++G ++P + D L+ + G+G
Sbjct: 69 IEELEQDIRRIGLYRNKAKHIHNLCRLLIDQYGG-------EIPSEH--DELVKLPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ VLE ++K L
Sbjct: 120 KTANVVVSTAFNVPAIAVDTHVERVSKRLGFAGWDD-------------SVLE-VEKKLM 165
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARL 615
R+ + D+ +L H++LI FG+ C P C CP+ CR ++R+
Sbjct: 166 KRVPR-DEWSL--THHRLIFFGRYHCKAQNPQCQVCPLLDVCREGKKRMKTSRI 216
>gi|374636071|ref|ZP_09707655.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
gi|373560329|gb|EHP86596.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
Length = 218
Score = 53.1 bits (126), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
W+++ K ++ + K+E D + L+ +++++ + IK G N+ AER+K+
Sbjct: 40 WKNVEKAIE--NLKKENLIDEIKILN------TDIEKLKKLIKPAGFYNIKAERLKNITK 91
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
+V + + + + + + +L+++G+G ++ + + L L F +D RI
Sbjct: 92 FIVENYKNTENLAKLSIKLEDLRKEILNVKGIGKETADSILLYALDREIFVIDAYTRRIF 151
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
R L ++E + I+ L K D + E H ++ GK +C
Sbjct: 152 SR--------------LRIIEGGEEYDEIRGIFEKNLPK-DLKIYKEYHALIVELGKHYC 196
Query: 588 TKSKPNCNACPMRGEC 603
K P C CP+ C
Sbjct: 197 KKKNPVCEKCPLHNLC 212
>gi|393766633|ref|ZP_10355188.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
gi|392727951|gb|EIZ85261.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
Length = 253
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+E++ A V EI AI + A R+++ L + GS+DL +L D+ A+ +
Sbjct: 85 DWESVIDAEVPEIQAAIAGVTWPELKAPRIREVLIAVRERCGSLDLAFLGDMDVAAARAW 144
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +I G+G K S + TL A PVD++ R+A RLG + ++ + +
Sbjct: 145 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLI-------GPRVDVGPSHA 197
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+L + W + LY+ H L+ G+ C +P C C + C
Sbjct: 198 ILRAQLPADW------SAQALYDNHEILMLHGQQVCHHRRPACGRCVLVDLC 243
>gi|323339826|ref|ZP_08080095.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417974103|ref|ZP_12614927.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092699|gb|EFZ35302.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346329558|gb|EGX97853.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 213
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
K ++ L+ + G+G K+ AF VDT+V R+A RL V +P L++
Sbjct: 107 KTREELMELTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIE-- 162
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
++E + + W E H+ LI +G+ C KP C CP+ EC++F
Sbjct: 163 --RQLMEQVDESRW-----------IEAHHLLIAWGRHQCLARKPKCETCPLSFECKYF 208
>gi|398993563|ref|ZP_10696509.1| endonuclease III [Pseudomonas sp. GM21]
gi|398134559|gb|EJM23709.1| endonuclease III [Pseudomonas sp. GM21]
Length = 212
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HG +VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 -KQYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|398839352|ref|ZP_10596600.1| endonuclease III [Pseudomonas sp. GM102]
gi|398902044|ref|ZP_10650755.1| endonuclease III [Pseudomonas sp. GM50]
gi|398113069|gb|EJM02920.1| endonuclease III [Pseudomonas sp. GM102]
gi|398179053|gb|EJM66678.1| endonuclease III [Pseudomonas sp. GM50]
Length = 212
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV HG +VP + ++ L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREALEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KEYLLDAHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|325298553|ref|YP_004258470.1| endonuclease III [Bacteroides salanitronis DSM 18170]
gi|324318106|gb|ADY35997.1| endonuclease III [Bacteroides salanitronis DSM 18170]
Length = 214
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYL 493
EA+ + E I+ N A+ + LVR++ G + PD ++ L
Sbjct: 63 EAMAATTPDVVYEYIRSVSYPNNKAKHLVGMAQMLVRDYEGQV---------PDTLEE-L 112
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYPV 552
+ + G+G K+ ++ + H A VDT+V R++ R+G VP P + + HL P
Sbjct: 113 VKLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPGTCTTPLATEKHLTRYIP- 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ L P+ H+ LI G+ CT P C+ C + G C+
Sbjct: 172 -----EALIPK-----------AHHWLILHGRYVCTARNPKCDKCGLNGICQ 207
>gi|320100933|ref|YP_004176525.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
gi|319753285|gb|ADV65043.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
Length = 223
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
++A+ L+ + G+G K+ + V L FPVDT++ RI R+G+ + +
Sbjct: 114 NEARRRLMELPGVGEKTADVVLLRYFGIPVFPVDTHISRITRRMGFTETGRYSDVSSFWM 173
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P W L ELH LIT G+ C KP C+ C +R C+H+
Sbjct: 174 ENTSP---------WNYL---------ELHLYLITHGRRICKARKPLCDECVLRDLCKHY 215
>gi|223986376|ref|ZP_03636383.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
gi|223961667|gb|EEF66172.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
Length = 226
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A +++I + I+ G+ + A+ ++ +V + G + + + + L
Sbjct: 59 EALAEAPLEDIEDCIRRIGLYHNKAKSIQGLARGVVEQFGGVMPQTMEE---------LT 109
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G KS + + A VDT+V R++ RLG P+ VLE
Sbjct: 110 SLPGVGRKSANVIMSVCFGMPAIAVDTHVERVSKRLGLAA----PKDT---------VLE 156
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+K + KL + H+ I FG+ FC P C CP CR + +
Sbjct: 157 VEKKLMR----KLPKAEWSHAHHLFIFFGRYFCKAKNPQCPDCPFTSFCREYKA 206
>gi|315227180|ref|ZP_07868967.1| endonuclease III [Parascardovia denticolens DSM 10105 = JCM 12538]
gi|315119630|gb|EFT82763.1| endonuclease III [Parascardovia denticolens DSM 10105 = JCM 12538]
Length = 327
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
AL AN E++E I G A+ N L+ G +VP + + L +
Sbjct: 175 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 225
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ + FPVDT+V R+ RL W + + PV +
Sbjct: 226 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHW--------RSDWNKTKDDPV--A 275
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
I+K + + R +L ++LI FG+ C KP C CP+R C F
Sbjct: 276 IEKEVTAAFEPTEWR---DLSHRLIDFGRDTCHARKPECLICPLRDTCPSFG 324
>gi|452963265|gb|EME68342.1| EndoIII-related endonuclease [Magnetospirillum sp. SO-1]
Length = 211
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ + ++E I+ G+ A + + RL+ HG VP D+A L
Sbjct: 62 EAMVALGEEGLAECIRTIGLYKTKARNVVELSRRLLARHGG-------KVPHDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V + VDT+ R+A R G P + + E+++ L+ P
Sbjct: 113 ALPGVGRKTANVVLNIAFGEPTIAVDTHCFRVANRTGLAPGRTV-EAVEEGLMRATPA-- 169
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
R L H+ LI G+ C KP+C AC +R C
Sbjct: 170 ---------------RWLQHAHHWLILHGRYVCKARKPDCGACVVRDLC 203
>gi|150391360|ref|YP_001321409.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149951222|gb|ABR49750.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 216
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E+ + IK G NM ++ + + L+ +HG +VP ++ + L+++ G+G K+
Sbjct: 76 ELGQWIKSCGFYNMKSKNILATCHLLMEKHGG-------EVPEER--EALMALPGVGRKT 126
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V A VDT+V R++ RLG + ++ Q +++SI K +W
Sbjct: 127 ANVVISNVFGQDAIAVDTHVFRVSNRLGLAHSDNVDDTEQ-------DLMKSIPKSMWS- 178
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ H+ +I G+ C +P C CP+ C H+
Sbjct: 179 ----------DAHHWIILHGRRICKARRPLCEECPLTTYCLHY 211
>gi|383787605|ref|YP_005472174.1| putative endonuclease III-like protein [Fervidobacterium
pennivorans DSM 9078]
gi|383110452|gb|AFG36055.1| putative endonuclease III-like protein [Fervidobacterium
pennivorans DSM 9078]
Length = 315
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EIS IK G N+ A+R+K+ L L + + DLE ++ ++ +D LLS++G+G ++
Sbjct: 169 EISFLIKPAGFFNVKAQRLKNLLTWL--KSYNFDLEKIKTKSIEEIRDELLSVKGIGKET 226
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ + L L F VD R+ RL + L+ E L + +PR
Sbjct: 227 ADSIILYALELPVFVVDAYTKRLLDRLLGIKLKEYDEYRLLF------------EKTYPR 274
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L Q E H ++ K C ++ P C CP+ C++
Sbjct: 275 DVALYQ----EFHGLIVEHAKALC-RTNPLCATCPVES-CKY 310
>gi|260437726|ref|ZP_05791542.1| endonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809748|gb|EFF68953.1| endonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 211
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 27/165 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ E I+ G + A+ +K L+ H +VP D + L ++ G+
Sbjct: 69 ADIKELEEDIRSTGFYHNKAKNIKACATELLERHNG-------EVPRDI--ESLTALSGV 119
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R H + VDT+V RI+ +LG + P ++ L+++ P
Sbjct: 120 GRKTANVIRGNIYHEPSIVVDTHVKRISRKLGLTK-EDDPVKIEFDLMKVLPK------- 171
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
D LY + Q+I G+ C P C C +R C+
Sbjct: 172 --------DHWILYNI--QIIRLGRNICFARNPKCEECFLRDLCK 206
>gi|154686481|ref|YP_001421642.1| hypothetical protein RBAM_020490 [Bacillus amyloliquefaciens FZB42]
gi|384265830|ref|YP_005421537.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385265206|ref|ZP_10043293.1| HhH-GPD superfamily base excision DNA repair protein [Bacillus sp.
5B6]
gi|387898837|ref|YP_006329133.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus
amyloliquefaciens Y2]
gi|429505620|ref|YP_007186804.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452855993|ref|YP_007497676.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|154352332|gb|ABS74411.1| Nth [Bacillus amyloliquefaciens FZB42]
gi|380499183|emb|CCG50221.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|385149702|gb|EIF13639.1| HhH-GPD superfamily base excision DNA repair protein [Bacillus sp.
5B6]
gi|387172947|gb|AFJ62408.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus
amyloliquefaciens Y2]
gi|429487210|gb|AFZ91134.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452080253|emb|CCP22015.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 219
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVNLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMKKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|83590725|ref|YP_430734.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Moorella thermoacetica ATCC 39073]
gi|83573639|gb|ABC20191.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Moorella thermoacetica ATCC 39073]
Length = 233
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 66/170 (38%), Gaps = 27/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A+ +E++ IK G+ A + LVRE+G PDK +D LL
Sbjct: 84 EVLAAADPEEVAACIKSLGLYRTKAAHLVAACRTLVREYGG--------RVPDKLED-LL 134
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K V VDT+V R+A RLG + E+ + + L P
Sbjct: 135 RLHGVGRKVANVVLSNAFGRDVIAVDTHVFRVANRLGLARAGDVRETERQLMAALPPGSR 194
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
E H+ LI G+ C P C C +R CR
Sbjct: 195 G------------------EAHHLLIYHGREVCRARNPRCRDCTLRSYCR 226
>gi|451941382|ref|YP_007462019.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900769|gb|AGF75231.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 246
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ G+ A + N L+ ++G P+K +D L+S+ G+G K+
Sbjct: 89 EIACHIRTIGLWRAKARNVYALCNFLIDQYGG--------KVPEKRED-LMSLPGVGRKT 139
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + H VDT++ R+ RLG P + PE ++ LL++ P+
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPI----------- 187
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
R L+ H+ LI G+ C K C C + C+
Sbjct: 188 ------RYLHHAHHWLILHGRYICQARKVQCTQCIIADLCK 222
>gi|423349662|ref|ZP_17327318.1| endonuclease III [Scardovia wiggsiae F0424]
gi|393702778|gb|EJD64981.1| endonuclease III [Scardovia wiggsiae F0424]
Length = 210
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E+L A V+++ + I+ G + A+R N LV+ S +VP + L
Sbjct: 57 ESLADAPVQDVEQIIRTIGFYHTKAQRAIIIANELVQRFNS-------EVP--HTMEELT 107
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL----GWVPLQPLPESLQLHLLELY 550
++ G+G K+ V + FPVDT+V R+ RL W + P ++ + +
Sbjct: 108 TLPGVGRKTANVVLGNAFNLPGFPVDTHVIRVTKRLHWRSDWRSAKSDPVRIEKEVTAAF 167
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
P E W +L ++LI FG+ C KP C CP+R C F
Sbjct: 168 PPQE------WK-----------DLSHRLINFGRDTCHARKPECLICPLRETCPSFG 207
>gi|383642104|ref|ZP_09954510.1| endonuclease III [Sphingomonas elodea ATCC 31461]
Length = 221
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 27/159 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ E IK G+ N A+ + L+R+HG VP D+ D L + G+G K+
Sbjct: 72 LKEHIKTIGLFNTKAKNVIALSEALIRDHGGA-------VPEDR--DALEQLPGVGRKTA 122
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V H F VDT++ R+ R G P + P +++L L + P
Sbjct: 123 NVVMNTAFGHETFAVDTHIFRVGNRTGLAPGKT-PLAVELKLEKAVP------------- 168
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Q H+ LI G+ C P C CP+ C
Sbjct: 169 ----QPFRLHAHHWLILHGRYICKARTPECWRCPVADLC 203
>gi|325264606|ref|ZP_08131336.1| endonuclease III [Clostridium sp. D5]
gi|324030268|gb|EGB91553.1| endonuclease III [Clostridium sp. D5]
Length = 208
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+++E+ + IK G + A+ + L+ G +VP ++ + L S+ G+
Sbjct: 67 ADLEELEQDIKPTGFYHTKAKNIIACTRALINRFGG-------EVP--RSLEDLTSLAGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + + VDT+V RI+ RLG + PE ++ L++ P
Sbjct: 118 GRKTANVIRGNIYYEPSVVVDTHVKRISKRLGLTKHED-PEKIEQDLMKELPK------- 169
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 --------DHWILYNI--QIITFGRSICTARSPKCGECFLQKYCKEY 206
>gi|13472772|ref|NP_104339.1| endonuclease III [Mesorhizobium loti MAFF303099]
gi|14023519|dbj|BAB50125.1| endonuclease III [Mesorhizobium loti MAFF303099]
Length = 238
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ + I+ G+ A+ + L+R+HG V PD +D L+ + G+G K+
Sbjct: 77 KVGDYIRTIGLWRNKAKNVIALSEALIRDHGG--------VVPD-GRDELVKLPGVGRKT 127
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 128 ANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGKT-PEQVEQGLLKIIP------------ 174
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ H+ LI G+ C KP+C AC + C+
Sbjct: 175 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 210
>gi|448432620|ref|ZP_21585676.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
gi|445686876|gb|ELZ39180.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
Length = 232
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHG-SIDLEWLRDVPPDKAKD 491
D+ A+ A+ + + E I+ G+ + A R++ L + E G + L +L + D AK
Sbjct: 73 DFAAIEAADHEALRETIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L I+G+G K+ V VDT+V R++ R G VP L E P
Sbjct: 133 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDERVP 192
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCN 595
+Y LH LI G+ C+ P+C+
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDCD 219
>gi|347521618|ref|YP_004779189.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|385832997|ref|YP_005870772.1| endonuclease III [Lactococcus garvieae Lg2]
gi|343180186|dbj|BAK58525.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|343182150|dbj|BAK60488.1| endonuclease III [Lactococcus garvieae Lg2]
Length = 214
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E+L A++ ++ + I+ G+ A+ + LV S ++P DK
Sbjct: 61 DPESLAQADIADVEQCIRTIGLYKTKAKNIVKTSQMLVENFNS-------ELPRDK--KL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V T VDT+V RI+ RL VP + ++ L++L P
Sbjct: 112 LQTLSGVGRKTANVVLGETYGIPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ E H+ LI FG+ CT P C CP+ C+
Sbjct: 171 ----------------EERWVESHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|257069732|ref|YP_003155987.1| endonuclease III [Brachybacterium faecium DSM 4810]
gi|256560550|gb|ACU86397.1| endonuclease III [Brachybacterium faecium DSM 4810]
Length = 230
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 20/159 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
++E ++ GM A R+ L+ HG +VP D+A L ++ G+G K+
Sbjct: 86 VTEVVRPLGMGATRARRLIGLAQGLLARHGG-------EVPDDQAA--LEALPGVGRKTA 136
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
VR H VDT+VGR+A RLGW P ++ E + +
Sbjct: 137 HVVRGAWFGHSLLAVDTHVGRLAQRLGWTT-ATTPRRVE----------EDVVARVEADG 185
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L L +LI G+ CT P C C + C
Sbjct: 186 TGAPEEDLTILGLRLILHGRRVCTARAPRCGQCALVDLC 224
>gi|416086449|ref|ZP_11587460.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|444335005|ref|ZP_21150385.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|444337345|ref|ZP_21151335.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348577|ref|ZP_21156200.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|348009901|gb|EGY50003.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|443546693|gb|ELT56313.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443547093|gb|ELT56655.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|443549577|gb|ELT58319.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 180
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 38 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 88
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 89 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 136
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 137 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 174
>gi|387120034|ref|YP_006285917.1| endonuclease III, partial [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|385874526|gb|AFI86085.1| endonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 147
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 5 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 55
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 56 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 103
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 104 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 141
>gi|10640069|emb|CAC11921.1| endonuclease III related protein [Thermoplasma acidophilum]
Length = 197
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + L A+ E+ I + G + + ++ + + R++R+ + + PD D
Sbjct: 42 DIDGLADADPDEVGRIISKVGFWRVKSRKVVE-IARIIRDRYNYRV-------PDSI-DE 92
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+S+ G+GLK+ + V + A VDT+V RI+ R+GW + PE L + PV
Sbjct: 93 LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFRISHRIGWSSART-PEETSEELERIIPV 151
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+Q P ++ FGK C +P C+ CP+ CR++
Sbjct: 152 --DLQVGFNP---------------MMVEFGKAICRPVRPLCDRCPVSEYCRYY 188
>gi|395792597|ref|ZP_10472021.1| endonuclease III [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395432154|gb|EJF98143.1| endonuclease III [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 246
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ G+ A + N L+ ++G PDK +D L+S+ G+G K+
Sbjct: 89 EIARHIRTIGLWRAKARNVYALCNFLIDQYGG--------KVPDKRED-LMSLPGVGRKT 139
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + H VDT++ R+ RLG P + PE ++ LL++ PV
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPV----------- 187
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L H+ LI G+ C K C C + C+
Sbjct: 188 ------HYLRHAHHWLILHGRYICQARKTQCTRCIIADLCK 222
>gi|395648781|ref|ZP_10436631.1| endonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 212
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ HGS +VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIARGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 --KQYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|451346582|ref|YP_007445213.1| endonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449850340|gb|AGF27332.1| endonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 219
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMKKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|150020336|ref|YP_001305690.1| endonuclease III [Thermosipho melanesiensis BI429]
gi|149792857|gb|ABR30305.1| endonuclease III [Thermosipho melanesiensis BI429]
Length = 203
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYL 493
+ L A +++ E IK G+ A+R+ + +V + G + PD ++ L
Sbjct: 56 QTLLKAKEEDLYELIKPAGLYRQKAKRIIEISKIIVNKFSGKV---------PDTLEE-L 105
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
L++ G+G K+ V ++ A VDT+V RI+ RLGW + P + L++L P
Sbjct: 106 LTLPGVGRKTANIVLYVSFSKPALAVDTHVHRISNRLGWCKTKN-PNETEFALMKLLP-- 162
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K LW ++ ++ FGK C P C+ CP+ C+
Sbjct: 163 ----KDLWG-----------PINGSMVKFGKNVCLPRNPKCDICPIYDYCK 198
>gi|359689881|ref|ZP_09259882.1| endonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418749244|ref|ZP_13305536.1| putative endonuclease III [Leptospira licerasiae str. MMD4847]
gi|418757752|ref|ZP_13313939.1| putative endonuclease III [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115529|gb|EIE01787.1| putative endonuclease III [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404276313|gb|EJZ43627.1| putative endonuclease III [Leptospira licerasiae str. MMD4847]
Length = 231
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E+L A +K+I + I G A+ + F N L+ E+G +P K+ L+
Sbjct: 81 ESLASAPLKKIEKIIYPTGFYRNKAKSVSGFANLLLHEYGG-------KLP--KSIKELI 131
Query: 495 SIRGLGLKSVECVRLLTLHHLA--FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
+ G+G K+ V L +HH++ F VDT+V R++ +LG Q P ++ L++
Sbjct: 132 KLPGIGRKTANVV-LNEIHHISEGFVVDTHVKRVSKKLGLTK-QTDPVKVEKDLMQ---- 185
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++Q W L +LY I G+ +C K C C +R EC
Sbjct: 186 --NVQPEYWMDL------SLY-----FIFLGRKYCKAHKTFCETCILRKEC 223
>gi|91201716|emb|CAJ74776.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 216
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSI 476
N K + +++ L + + ++ E++E ++ G N+ A+R+K F+N L ++ G++
Sbjct: 48 NVEKAINNIKKVNKLTPKGIHSLSLPELAELVRPSGFFNVKAKRVKTFVNWLFSKYEGNL 107
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
+ +D ++ LLSI G+G ++ + + L + F +D RI R G VP +
Sbjct: 108 TAMFHQDC--RTLREELLSINGIGPETADSILLYAGNMPTFVIDAYTHRIFSRHGLVPEE 165
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
+ ++ + P D + E H ++ GK+FC K K C
Sbjct: 166 SAYDEMKSFFEDNLPE---------------DTKLFNEYHALIVNIGKLFC-KPKRVCEQ 209
Query: 597 CPM 599
CP+
Sbjct: 210 CPL 212
>gi|222099270|ref|YP_002533838.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
gi|221571660|gb|ACM22472.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
Length = 208
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYL 493
E L A +++ + IKE GM AER+ +V ++ G + PD ++ L
Sbjct: 55 EDLAKAKPEDLYDLIKESGMYRQKAERIVKISKIIVEKYSGKV---------PDTLEE-L 104
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
L + G+G K+ V + A VDT+V RI+ RLGWV + PE + L L P
Sbjct: 105 LRLPGVGRKTANIVLWVGFRKPALAVDTHVHRISNRLGWVKTKT-PEETEKALKRLLP-- 161
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ LW ++ ++ FG+ C P C C ++ C ++
Sbjct: 162 ----EKLWG-----------PINGSMVEFGRNVCRPVNPKCEDCFLKKHCEYY 199
>gi|374628503|ref|ZP_09700888.1| endonuclease III [Methanoplanus limicola DSM 2279]
gi|373906616|gb|EHQ34720.1| endonuclease III [Methanoplanus limicola DSM 2279]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 36/174 (20%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A + +I E I+ G ++ ++ LVRE+ V PD ++ L+ + G+
Sbjct: 70 AEISKIEEIIRPTGFYRAKSKNIRGASEMLVREYDG--------VVPDSMEE-LIKLPGV 120
Query: 500 GLKSVECVRLLTLHHL-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
G K+ V L+H VDT+V R++ RLG P+ ++ L LYP
Sbjct: 121 GRKTANIV----LNHAYGIDAGIAVDTHVKRVSYRLGMTD-NTDPDKIERDLTALYP--- 172
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
Q ++++ LI+ G+ C KP C C ++ CR++++
Sbjct: 173 --------------QEVWGKMNFLLISHGRAVCDAKKPACERCCIKDYCRYYSN 212
>gi|335996612|ref|ZP_08562529.1| DNA lyase [Lactobacillus ruminis SPM0211]
gi|335351682|gb|EGM53173.1| DNA lyase [Lactobacillus ruminis SPM0211]
Length = 213
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQL--H 545
K ++ L+ + G+G K+ AF VDT+V R+A RL V +P L++
Sbjct: 107 KTREELMELTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIERQ 164
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L+E ++D+ E H+ LI +G+ C KP C CP+ EC++
Sbjct: 165 LME-----------------QVDENRWIEAHHLLIAWGRHQCLARKPKCETCPLSFECKY 207
Query: 606 F 606
F
Sbjct: 208 F 208
>gi|148269689|ref|YP_001244149.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170288365|ref|YP_001738603.1| endonuclease III [Thermotoga sp. RQ2]
gi|281411600|ref|YP_003345679.1| endonuclease III [Thermotoga naphthophila RKU-10]
gi|147735233|gb|ABQ46573.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170175868|gb|ACB08920.1| endonuclease III [Thermotoga sp. RQ2]
gi|281372703|gb|ADA66265.1| endonuclease III [Thermotoga naphthophila RKU-10]
Length = 213
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +++ IKE GM A R+ + LV +G PD ++ LL + G+
Sbjct: 60 AKPEDLYNLIKESGMYRQKAARIVEISRILVERYGG--------RVPDSLEE-LLKLPGV 110
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V RI+ RLGWV + PE + L +L P +
Sbjct: 111 GRKTANIVLWVGFRKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------ED 163
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
LW ++ ++ FG+ C P C C ++ C +
Sbjct: 164 LWG-----------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|429218033|ref|YP_007179677.1| endonuclease III [Deinococcus peraridilitoris DSM 19664]
gi|429128896|gb|AFZ65911.1| endonuclease III [Deinococcus peraridilitoris DSM 19664]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A ++I I+ G+ A + LV H +VP D +
Sbjct: 68 DARALALATAEQIEPHIRTIGLYRAKARNLVRLAQLLVERHAG-------EVPNDF--EA 118
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
++++ G G K+ V A VDT+VGR+A RLG+ Q P ++ L+ L+P
Sbjct: 119 VVALPGAGRKTANVVLSNAFGRPAIAVDTHVGRLARRLGFSS-QLDPNKVERDLMILFP- 176
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++R ++ LH+ LI G+ C KP C++C + C
Sbjct: 177 ---------------EERWIF-LHHALILHGRRVCLARKPLCHSCVLEPHC 211
>gi|218290429|ref|ZP_03494559.1| endonuclease III [Alicyclobacillus acidocaldarius LAA1]
gi|218239557|gb|EED06751.1| endonuclease III [Alicyclobacillus acidocaldarius LAA1]
Length = 220
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E A+ E++E I+E G+ ++ + + LV E+G +VP K++D L+
Sbjct: 65 EGFAKASPDEVAEDIREVGLFRSKSKHIVETARILVDEYGG-------EVP--KSRDRLM 115
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPESLQLHLLELYPVL 553
+ G+G K+ V AF VDT+V R+ R+G PL Q V
Sbjct: 116 ELPGVGRKTANVVVSNAYGVPAFAVDTHVQRVTNRIGLAQSNDPLKTEQQ--------VC 167
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ LW + H+ LI G+ CT KP C+ CP+ C++
Sbjct: 168 AKLPPELWTKA-----------HHALILHGRRVCTARKPKCHICPVADLCQY 208
>gi|452209864|ref|YP_007489978.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099766|gb|AGF96706.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 205
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+V++I E I++ G + A R+K+ L+ ++ VP D + LL + G+
Sbjct: 63 ADVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------RVPDDM--ETLLKLPGV 113
Query: 500 GLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
G K+ CV L A VDT+V RI+ RLG V + PE ++ L +L P QK
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGLVVTKN-PEETEMELKKLLP-----QK 167
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Y W + L L+ FG+ C P C C + C
Sbjct: 168 Y-WRHVNIL-----------LVKFGQNVCRPISPRCGICVLNDIC 200
>gi|254561880|ref|YP_003068975.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
gi|254269158|emb|CAX25124.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
Length = 254
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A+V+EI I + A R+K L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIGAASVEEIETTIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVDEARGW 145
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +I G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
VL + W + LY+ H L+ G+ C P C+ C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACDRCVLLDIC 244
>gi|415709635|ref|ZP_11463260.1| endonuclease III [Gardnerella vaginalis 6420B]
gi|388056307|gb|EIK79183.1| endonuclease III [Gardnerella vaginalis 6420B]
Length = 224
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 543
+ P +D L+S+ G+G K+ V FPVDT+V R+ RLGW +Q P +
Sbjct: 116 IVPSNMED-LISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVA 174
Query: 544 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ I Y P+ L ++LI G+ CT P C +CP+ C
Sbjct: 175 IE--------REITAYFAPK-------EWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|384430471|ref|YP_005639831.1| endonuclease III [Thermus thermophilus SG0.5JP17-16]
gi|386361223|ref|YP_006059468.1| endonuclease III [Thermus thermophilus JL-18]
gi|333965939|gb|AEG32704.1| endonuclease III [Thermus thermophilus SG0.5JP17-16]
gi|383510250|gb|AFH39682.1| endonuclease III [Thermus thermophilus JL-18]
Length = 220
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I+ G+ A+ + RLV E+G +VP K K+
Sbjct: 72 DAKALASATPEEVEPYIRRIGLYRTKAKNLVALARRLVEEYGG-------EVP--KEKEA 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + + PE + L L+P
Sbjct: 123 LMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCFSEAKA-PERIGKDLEALFP- 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +H+ L+ G+ CT +P C AC + C
Sbjct: 181 -----KEDW-----------VFVHHALVLHGRYVCTARRPRCGACVLAPYC 215
>gi|317055920|ref|YP_004104387.1| DNA-(apurinic or apyrimidinic site) lyase [Ruminococcus albus 7]
gi|315448189|gb|ADU21753.1| DNA-(apurinic or apyrimidinic site) lyase [Ruminococcus albus 7]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++ EI E +K G+ A+ +K+ +L E+G V PD + L + G+
Sbjct: 71 ADIAEIEEIVKPCGLYKTKAKSIKEMCIQLRDEYGG--------VLPDTLEG-LTKLSGI 121
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ + H A DT+ RI RLG V + P ++ L ++ P +S
Sbjct: 122 GRKTANLIMGDIYHKPAVVTDTHCIRITGRLGLVKNKE-PAKVEAELWKILPPEKS---- 176
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+L ++L+ FG+ +CT P C CP+ C
Sbjct: 177 -------------SDLCHRLVLFGREYCTARSPKCGGCPLNDIC 207
>gi|423713258|ref|ZP_17687518.1| endonuclease III [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395423299|gb|EJF89494.1| endonuclease III [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 246
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ G+ A + N L+ ++G PDK +D L+S+ G+G K+
Sbjct: 89 EIARHIRTIGLWRAKARNVYALCNFLIDQYGG--------KVPDKRED-LMSLPGVGRKT 139
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + H VDT++ R+ RLG P + PE ++ LL++ PV
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPV----------- 187
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L H+ LI G+ C K C C + C+
Sbjct: 188 ------HYLRHAHHWLILHGRYICQARKTQCTRCIIADLCK 222
>gi|297243033|ref|ZP_06926971.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
gi|296889244|gb|EFH27978.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
Length = 224
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 543
+ P +D L+S+ G+G K+ V FPVDT+V R+ RLGW +Q P +
Sbjct: 116 IVPSNMED-LISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVA 174
Query: 544 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ I Y P+ L ++LI G+ CT P C +CP+ C
Sbjct: 175 IE--------REITAYFAPK-------EWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|291280018|ref|YP_003496853.1| endonuclease III [Deferribacter desulfuricans SSM1]
gi|290754720|dbj|BAI81097.1| endonuclease III [Deferribacter desulfuricans SSM1]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
++E + A+++EI E I+ G A+ +K ++ ++ + +P D +
Sbjct: 62 NFEDFKNADLEEIMEDIRPTGFFRNKAKNIKKLSEVILEKYEGV-------IPVDI--NE 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ + + VDT+V RI+ RLG P+ ++ L+E+ P
Sbjct: 113 LVKLPGIGRKTANVLLGNCFNIPGIVVDTHVKRISQRLGLTD-NDNPDKIEQDLMEVIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
K W + +Q+I FG+ CT KP C+ C MR C+ FA++ A
Sbjct: 171 -----KEKWTKWS-----------HQVIDFGRKICTAKKPKCDICEMRDVCK-FANSEA 212
>gi|398875557|ref|ZP_10630728.1| endonuclease III [Pseudomonas sp. GM67]
gi|398885581|ref|ZP_10640490.1| endonuclease III [Pseudomonas sp. GM60]
gi|398192306|gb|EJM79464.1| endonuclease III [Pseudomonas sp. GM60]
gi|398206914|gb|EJM93671.1| endonuclease III [Pseudomonas sp. GM67]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +SE IK G+ N A+ + + LV HG +VP + ++ L
Sbjct: 62 QAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREELE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 --KEYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|325263223|ref|ZP_08129958.1| 8-oxoguanine-DNA-glycosylase [Clostridium sp. D5]
gi|324031616|gb|EGB92896.1| 8-oxoguanine-DNA-glycosylase [Clostridium sp. D5]
Length = 269
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 411 LRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470
+R+ +Q K ++ D Y A V E + + N L R K ++ R
Sbjct: 121 IRRCIQNICQKYGERKEDADGNIYYTFPSAEVLACLEEDELKACN--LGYRSK-YVVRTA 177
Query: 471 RE--HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGR 525
R +G I L+ +R +P KAK+ LL + G+G K +C+ L LHHL AFPVDT++ +
Sbjct: 178 RSVANGEISLDAIRKMPYKKAKEELLKLYGVGEKVADCICLFALHHLAAFPVDTHINQ 235
>gi|375362747|ref|YP_005130786.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731269|ref|ZP_16170395.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|371568741|emb|CCF05591.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407075423|gb|EKE48410.1| endonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 219
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMKKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|224541854|ref|ZP_03682393.1| hypothetical protein CATMIT_01026 [Catenibacterium mitsuokai DSM
15897]
gi|224525204|gb|EEF94309.1| endonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D L+S+ G+G K+ V + A VDT+V RI+ RLG+ PE L + +
Sbjct: 109 DALISLPGVGRKTANVVMAEGFGYPAIAVDTHVERISKRLGFAK----PEDTVLTVEK-- 162
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++++I K W + H+Q+I FG+ C P+C CP+ C+
Sbjct: 163 KLMKTIPKNRWIKT-----------HHQMIFFGRYHCKAMSPHCKECPLVDICK 205
>gi|16082555|ref|NP_394252.1| endonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + L A+ E+ I + G + + ++ + + R++R+ + + PD D
Sbjct: 62 DIDGLADADPDEVGRIISKVGFWRVKSRKVVE-IARIIRDRYNYRV-------PDSI-DE 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+S+ G+GLK+ + V + A VDT+V RI+ R+GW + PE L + PV
Sbjct: 113 LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFRISHRIGWSSART-PEETSEELERIIPV 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+Q P ++ FGK C +P C+ CP+ CR++
Sbjct: 172 --DLQVGFNP---------------MMVEFGKAICRPVRPLCDRCPVSEYCRYY 208
>gi|308174025|ref|YP_003920730.1| endonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|384158761|ref|YP_005540834.1| endonuclease III [Bacillus amyloliquefaciens TA208]
gi|384164798|ref|YP_005546177.1| endonuclease III [Bacillus amyloliquefaciens LL3]
gi|384167825|ref|YP_005549203.1| endonuclease III [Bacillus amyloliquefaciens XH7]
gi|307606889|emb|CBI43260.1| endonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|328552849|gb|AEB23341.1| endonuclease III [Bacillus amyloliquefaciens TA208]
gi|328912353|gb|AEB63949.1| endonuclease III [Bacillus amyloliquefaciens LL3]
gi|341827104|gb|AEK88355.1| endonuclease III [Bacillus amyloliquefaciens XH7]
Length = 219
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ ++ E+G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE ++K L
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C P C CP+ CR
Sbjct: 167 KKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|375308945|ref|ZP_09774226.1| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Paenibacillus sp. Aloe-11]
gi|375078254|gb|EHS56481.1| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Paenibacillus sp. Aloe-11]
Length = 224
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ + + L+ ++G ++P + D L+ + G+G
Sbjct: 69 IEELEQDIRRIGLYRNKAKHIHNLCRILIDQYGG-------EIPSEH--DQLIKLPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ VLE ++K L
Sbjct: 120 KTANVVVSTAFNVPAIAVDTHVERVSKRLGFAGWDD-------------SVLE-VEKKLM 165
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
R+ + D+ +L H++LI FG+ C P C CP+ CR
Sbjct: 166 KRVPR-DEWSL--THHRLIFFGRYHCKAQNPQCQVCPLLDVCR 205
>gi|239623210|ref|ZP_04666241.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522176|gb|EEQ62042.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 261
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E A++KE+ + I G +M A+ + LV + G PD +D L
Sbjct: 115 EKFAAADLKELEKDIHSTGFYHMKAKNIIACCKDLVEKFGG--------QVPDTIED-LT 165
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P
Sbjct: 166 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYDLMKVLPK-- 222
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D L+ +H +IT G+ C +P C C +R +C
Sbjct: 223 -------------DHWILWNIH--IITLGRTICIARRPGCGQCFLREDC 256
>gi|126651184|ref|ZP_01723394.1| Nth [Bacillus sp. B14905]
gi|126592022|gb|EAZ86088.1| Nth [Bacillus sp. B14905]
Length = 220
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ RL+ E+ ++P ++ L+++ G+G
Sbjct: 70 LEELQQEIRSIGLYRNKAKNIQALCQRLLDEYNG-------EIPA--TREALVTLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + + V E+I K
Sbjct: 121 KTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKD----------SVLEVEETIMK--- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K + H+QLI FG+ C P C+ CP+ +CR
Sbjct: 168 ----KTPMDKWSKTHHQLIFFGRYHCKAQNPGCHTCPLLSDCR 206
>gi|169853989|ref|XP_001833672.1| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
gi|116505322|gb|EAU88217.1| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
Length = 450
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 30/160 (18%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK-S 503
ISEAI + G R D+L + + E+ DVP K D L S+ G+G K +
Sbjct: 238 ISEAIAKVG----FWRRKTDYLKQTA---AKLQEEFEGDVP--KTVDELCSLPGVGPKMA 288
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGW--VPLQPLPESLQLHLLELYPVLESIQKYLW 561
C+++ +L VD +V RI+ RLGW P + PE +L+L P
Sbjct: 289 FLCLQVAWNLNLGIGVDVHVHRISNRLGWHRKPTKD-PEETRLNLQSWLP---------- 337
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
+L Q E++ L+ FG+V CT P C+ C + G
Sbjct: 338 ---SELHQ----EINPLLVGFGQVVCTPVNPKCDQCTLSG 370
>gi|21243286|ref|NP_642868.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108824|gb|AAM37404.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 357
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLWPR----LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQHAIIHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATALL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + + D YE DE+P I + ++LQ + K+ L+
Sbjct: 268 SLWTLPQAETESGMRAWFAAHIDGNYERADEMPPIVHTFSHYRLHLQPWRLRKVALR 324
>gi|410657012|ref|YP_006909383.1| Endonuclease III [Dehalobacter sp. DCA]
gi|410660050|ref|YP_006912421.1| Endonuclease III [Dehalobacter sp. CF]
gi|409019367|gb|AFV01398.1| Endonuclease III [Dehalobacter sp. DCA]
gi|409022406|gb|AFV04436.1| Endonuclease III [Dehalobacter sp. CF]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+E E I G+ A+ + L+ EH DVP + D L+ + G+G K
Sbjct: 77 REFEEIIHPIGLFRTKAKNILQTCELLIEEHHG-------DVPSNL--DDLVKMPGVGRK 127
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V A PVDT+V R+A RLG + + P ++ L L P+ LW
Sbjct: 128 TAGVVLANAYGIPALPVDTHVLRVANRLG-LSREKDPSKVEKELTALIPM------ELW- 179
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
+ H++LI G+ C KP C CP++ C F SA
Sbjct: 180 ----------IDTHHRLIFHGRKLCHARKPECPVCPLKDCCPAFTSA 216
>gi|406967816|gb|EKD92806.1| hypothetical protein ACD_28C00327G0009 [uncultured bacterium]
Length = 224
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 449 IKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507
I+ G N A+ + +L+ + HG I P +D L S+ G+GLKS V
Sbjct: 77 IRSCGYFNQKAKNIIKASQKLIEKYHGEI---------PQSLED-LTSLPGVGLKSAGVV 126
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
AFPVDT+V R+A R+G V H +++K L P+ C +
Sbjct: 127 LSQAFAIPAFPVDTHVFRVANRIGLV-----------HEKTRDKTAYALEKTL-PQDCWI 174
Query: 568 DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
D H QLI G+ C KP C CP++ C +
Sbjct: 175 D------FHLQLIFHGRKTCKSQKPRCYECPVKDLCEY 206
>gi|51893925|ref|YP_076616.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51857614|dbj|BAD41772.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
+V EI E I++ G+ A+ ++ L+ +HG +VP + L+ + G+G
Sbjct: 70 SVDEIGEMIRDCGLWKSKAKNIQGLSQMLLEKHGG-------EVP--STMEELIQLPGVG 120
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ V A VDT+V R+A RLG + PE + L+E P +
Sbjct: 121 RKTANVVLSNAFGIPAIAVDTHVFRVANRLGLAEAKT-PEETERQLMERIP------REY 173
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGP 620
W + H+ LI G+ C P C+ CP+ CR R A G
Sbjct: 174 WS-----------QAHHWLIYHGRQVCHARNPQCSQCPLLPHCRF-------GRQAGKGS 215
Query: 621 EEKSIVSS 628
+++ VSS
Sbjct: 216 VQRARVSS 223
>gi|339500707|ref|YP_004698742.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
gi|338835056|gb|AEJ20234.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
Length = 229
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYL 493
EAL EI+++I G AE + + L+ ++ G + PD + L
Sbjct: 79 EALVKLTKDEIAQSIYPAGFYRTKAEHLHTIADLLIHQYDGKV---------PDTL-EVL 128
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 553
LS+ G+G K+ V A VDT+V RI R GWV + +PE + L + P
Sbjct: 129 LSLPGVGRKTANLVLSEGFGQDAICVDTHVHRICNRTGWV-VTKVPEETEQALRHILP-- 185
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W R +++ L+ FG+ C P C+ CP+ C+
Sbjct: 186 ----RPYWRR-----------INWLLVQFGQQICRPQSPLCSQCPLTSFCK 221
>gi|448350252|ref|ZP_21539071.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
gi|445637759|gb|ELY90907.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
Length = 276
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQL 544
P + ++ LL +RG+G K+ +CV L FPVDT+V RI RLG P E ++
Sbjct: 151 PGEVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHEDVR- 209
Query: 545 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNC----NACPMR 600
E ++ + C H I FG+ FCT KP C ACPM
Sbjct: 210 ---------EVVEDEVPTAKCGFG-------HTATIQFGREFCTARKPACLDDPEACPMA 253
Query: 601 GEC 603
C
Sbjct: 254 DIC 256
>gi|373461989|ref|ZP_09553722.1| endonuclease III [Prevotella maculosa OT 289]
gi|371950166|gb|EHO68024.1| endonuclease III [Prevotella maculosa OT 289]
Length = 236
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYL 493
EA+ A+ +EI + IK N A + + LV + +G + PD D L
Sbjct: 71 EAMAKADWEEIFQLIKSVSYPNAKAHHLSEMAKMLVAQFNGEV---------PDNTDD-L 120
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYPV 552
+ G+G K+ V+ + VDT+V R++ RLG VP P ++L L++ P
Sbjct: 121 TRLPGVGRKTANVVQAVWFGKPTLAVDTHVFRVSHRLGLVPETANTPLKVELELMKYIPE 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ + + H+ L+ G+ C KP C +CP C
Sbjct: 181 VD-----------------VSDAHHWLLLHGRYVCKSQKPQCESCPFNAFC 214
>gi|104780422|ref|YP_606920.1| endonuclease III [Pseudomonas entomophila L48]
gi|95109409|emb|CAK14109.1| endonuclease III [Pseudomonas entomophila L48]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +S+ IK G+ N A+ + + LV +H +VP + ++ L
Sbjct: 62 QAIHALGVEGLSDYIKTIGLYNSKAKNVIETCRLLVEQHDG-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|421767561|ref|ZP_16204310.1| Endonuclease III [Lactococcus garvieae DCC43]
gi|407623979|gb|EKF50770.1| Endonuclease III [Lactococcus garvieae DCC43]
Length = 214
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E+L A++ ++ + I+ G+ A+ + LVR+ ++P DK
Sbjct: 61 DPESLAQADIADVEQCIRTIGLYKTKAKNIVKTAQMLVRDFNG-------ELPRDK--KL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V T VDT+V R++ RL VP + ++ L+ L P
Sbjct: 112 LQTLPGVGRKTANVVLGETYGIPGIAVDTHVERVSKRLDIVPQKASVLEVEEKLMRLIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ + H+ LI FG+ CT P C CP+ C+
Sbjct: 171 ----------------EDRWVKTHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|363896810|ref|ZP_09323359.1| endonuclease III [Oribacterium sp. ACB7]
gi|361960375|gb|EHL13624.1| endonuclease III [Oribacterium sp. ACB7]
Length = 240
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E N+KE+ E I G + A+ +K LV E+G +VP D D L
Sbjct: 72 EDFASCNLKELEEDIHSTGFYHNKAKNIKACATVLVEEYGG-------EVPKDI--DSLT 122
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ + H + VDT+V RI+ RLG P + L+++ P
Sbjct: 123 ALPGVGRKTGNLILGNIFHIPSIVVDTHVKRISNRLGLADSSD-PTKTEFQLMDVLP--- 178
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ W R + +I G+ CT KP C C + C
Sbjct: 179 ---EEFWIRW-----------NTHIIALGRTLCTSQKPKCELCYLNDLC 213
>gi|152987876|ref|YP_001347018.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452880555|ref|ZP_21957510.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
gi|150963034|gb|ABR85059.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452183029|gb|EME10047.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
Length = 212
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ +HGS PD +D L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRILIEKHGS--------QVPDNRED-LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------RDYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|387814765|ref|YP_005430252.1| DNA glycosylase and apyrimidinic (AP) lyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339782|emb|CCG95829.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 212
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + L+ +HGS +VP ++ L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGS-------EVP--ARREDLE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V A VDT++ R++ R G P + + E ++ L+ L P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKNVLE-VEKRLVRLVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ CT KP C AC + C
Sbjct: 169 --------------KEFLMDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|451850889|gb|EMD64190.1| hypothetical protein COCSADRAFT_36763 [Cochliobolus sativus ND90Pr]
Length = 526
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH---------------GS 475
S+D+ +R A+ KEI EAIK G+ ++ ++ +K L + E+ GS
Sbjct: 245 SVDWNKVRQADQKEIFEAIKSGGLADVKSKDIKRILEMVWEENQTRRKELQSSSNKAPGS 304
Query: 476 -------------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA 516
I L+ L + D A + L G+G K+ CV L L +
Sbjct: 305 ANEAEEEKSAEIEKASQDVISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPS 364
Query: 517 FPVDTNVGRIAVRLGWVP 534
F VDT+V R+ LGWVP
Sbjct: 365 FAVDTHVFRLCQWLGWVP 382
>gi|325283633|ref|YP_004256174.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
gi|324315442|gb|ADY26557.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
Length = 227
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP---VDTN 522
L RL E G L +L +PP +A+ L ++ G+G ++ LL L HLA P VD+N
Sbjct: 92 LRRLEEERGRPSLRFLHRLPPAEARTVLQALPGVGQRTAS---LLLLFHLAQPAAAVDSN 148
Query: 523 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR-LCKLDQRTLYELHYQLIT 581
+ R+ RL VP P ++ ++ LW + D H +
Sbjct: 149 IERLLHRLEVVP----------------PGWKADRQELWLEGVLPADAPLRAAFHRAGVR 192
Query: 582 FGKVFCTKSKPNCNACPMRGEC 603
G+ CT+ P C AC +R C
Sbjct: 193 HGREICTRHAPRCPACVLREWC 214
>gi|317148991|ref|XP_003190266.1| HhH-GPD family base excision DNA repair protein [Aspergillus oryzae
RIB40]
Length = 457
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S++++A+R A +K++ EAIK G+ ++ ++ +K L+ + +E+
Sbjct: 229 SVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPPD 288
Query: 474 ------GS------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
GS + L L + ++ + L+ G+G K+ CV L L
Sbjct: 289 LMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRP 348
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 349 CFAVDTHIFRICKWLGWVPPDKATEITAFGHLEV----------------RIPDHLKYSL 392
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H I GK C P C A
Sbjct: 393 HQLFIRHGKT-C----PRCRA 408
>gi|259480217|tpe|CBF71146.1| TPA: hypothetical base excision DNA repair protein (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 502
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 62/207 (29%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S++++A+R A VK++ EAIK G+ + ++ +K L+ + +E+
Sbjct: 276 SVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNSDS 335
Query: 474 ------------------------GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRL 509
+ L +L +P ++ L+ G+G K+ CV L
Sbjct: 336 GKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACVLL 395
Query: 510 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 569
L F VDT++ RI L WVP E LE+ ++
Sbjct: 396 FCLQRPCFAVDTHIFRICKWLNWVPPDRATEITAFSHLEV----------------RIPD 439
Query: 570 RTLYELHYQLITFGKVFCTKSKPNCNA 596
Y LH LI G KS P C A
Sbjct: 440 HLKYPLHQLLIRHG-----KSCPRCRA 461
>gi|171684933|ref|XP_001907408.1| hypothetical protein [Podospora anserina S mat+]
gi|170942427|emb|CAP68079.1| unnamed protein product [Podospora anserina S mat+]
Length = 813
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 38/212 (17%)
Query: 389 NISKSKKRKADGEKKNAIDWESLRKEVQ-------RNSGKQERSRDRMDSLDYEALRCAN 441
N+ K + +G +IDWE +R R SG + + +
Sbjct: 458 NLGKDFGIRTEGSGAGSIDWEKVRVSSPQALVNSIRISGNGPK-------------KAQH 504
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+K I + + E + M + ++ + L+++ + D+A + +S G+G+
Sbjct: 505 IKLILDKVYEENLERMKQAGTAENTDKDGAPPDLLSLDYMHAMTKDQAMEKFVSFPGIGI 564
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ CV L L F VDT+V + LGW P++ P+++ H ++
Sbjct: 565 KTAACVSLFCLRMPCFAVDTHVHKFCRWLGWTPVKADPDNVFRH-----------GDFMV 613
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPN 593
P K Y LH I G+ C K + N
Sbjct: 614 PDHLK------YGLHQLFIRHGQT-CFKCRKN 638
>gi|335357361|ref|ZP_08549231.1| endonuclease III [Lactobacillus animalis KCTC 3501]
Length = 212
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
K + L+S+ G+G K+ + V AF VDT+V R+A RLG VP +++ L+
Sbjct: 107 KTRKELMSLSGVGRKTADVVLAECFGIPAFAVDTHVSRVAKRLGMVPADSDVLTIEKILM 166
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ P + LW + H+++I +G+ C P C++CP+ C
Sbjct: 167 QKVP------QDLW-----------IKGHHRMIFWGRYQCMARNPKCSSCPLLDIC 205
>gi|396464023|ref|XP_003836622.1| hypothetical protein LEMA_P041580.1 [Leptosphaeria maculans JN3]
gi|312213175|emb|CBX93257.1| hypothetical protein LEMA_P041580.1 [Leptosphaeria maculans JN3]
Length = 512
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL------NRLVREH-------GS-- 475
S+D+ +R A+ KE+ EAIK G+ ++ ++ +K L N+ RE GS
Sbjct: 245 SVDWNKVRLADQKEVFEAIKSGGLADVKSKDIKKILQMVWEENQARREELISKEATGSKG 304
Query: 476 -----------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
+ L+ L + + A L G+G K+ CV L L +F
Sbjct: 305 EAAKDKENEIEKAESNIVSLDHLHGLSSEDAFTALTKYPGIGPKTASCVLLFCLQRPSFA 364
Query: 519 VDTNVGRIAVRLGWVP 534
VDT+V R+ LGWVP
Sbjct: 365 VDTHVFRLCRWLGWVP 380
>gi|386714544|ref|YP_006180867.1| endonuclease III [Halobacillus halophilus DSM 2266]
gi|384074100|emb|CCG45593.1| endonuclease III [Halobacillus halophilus DSM 2266]
Length = 220
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ IK G+ A+ +K LV + VPP K+ L S+ G+
Sbjct: 68 VSLEELQNDIKRIGLYRNKAKNIKKLSQTLVDQFNG-------QVPP--TKEELESLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVASVAFNEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L ++ K + H+++I FG+ C +PNC CP+ CR
Sbjct: 165 LMRKVPKEEWSVT---HHRMIFFGRYHCKAKRPNCEECPLLVLCR 206
>gi|344341598|ref|ZP_08772516.1| HhH-GPD family protein [Thiocapsa marina 5811]
gi|343798530|gb|EGV16486.1| HhH-GPD family protein [Thiocapsa marina 5811]
Length = 242
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 423 ERSRDRM---DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLE 479
ER+ +R+ SLD E++ + E+++A++ G N+ ++R++ F + G L
Sbjct: 47 ERALERLRLRSSLDAESILALDPPELADALRPSGYFNVKSQRVRGFCAAYLEAGGHPGLA 106
Query: 480 WLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 539
L PD + LL+I+G+G ++ + + L F VD RI RLG
Sbjct: 107 AL--ATPD-LRARLLAIKGIGPETADDILLYAFDRPVFVVDAYTRRIFERLGL------- 156
Query: 540 ESLQLHLLELYPVL-ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACP 598
L E Y V+ ++ L P D L E H +++ GK C +++P C C
Sbjct: 157 ----LAGGETYEVIRRGFEQALGP-----DVPMLKEYHALIVSQGKEVC-RTRPACERCA 206
Query: 599 MRGEC 603
+R C
Sbjct: 207 LRRTC 211
>gi|359783795|ref|ZP_09287004.1| endonuclease III [Pseudomonas psychrotolerans L19]
gi|359368255|gb|EHK68837.1| endonuclease III [Pseudomonas psychrotolerans L19]
Length = 212
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 27/166 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V+ +SE IK G+ N A + + L+ HG +VP + ++ L ++ G+G
Sbjct: 69 VEGLSEYIKTIGLYNSKARNVIETCRLLLERHGG-------EVP--QTREELEALPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V LA VDT++ R++ R P + + E ++L LL++ P
Sbjct: 120 KTANVVLNTAFRQLAMAVDTHIFRVSNRTNLAPGKNVVE-VELRLLKVVP---------- 168
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ L + H+ LI G+ C KP C +C + C + A
Sbjct: 169 -------RDFLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEYKA 207
>gi|403383159|ref|ZP_10925216.1| endonuclease III [Kurthia sp. JC30]
Length = 219
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ I+ G+ A+ ++ RL+ +G ++P ++ + L+++ G+G
Sbjct: 70 LEELENDIRSIGLFRSKAKNIQKLCARLLEVYGG-------EIPAEREE--LVTLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + + A VDT+V RI RLG + ++ ++ P+ W
Sbjct: 121 KTANVVLSVAFNVPAMAVDTHVERITKRLGLCRWKDSVLEVEQTIMRKTPIER------W 174
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ H+Q+I FG+ C +P C+ CP+ +CR
Sbjct: 175 NKA-----------HHQMIFFGRYHCKAQRPQCDTCPLFDDCR 206
>gi|317128625|ref|YP_004094907.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315473573|gb|ADU30176.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 221
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A + E+ I+ G+ A+ +K L+ ++ ++P +K++ L+ + G+
Sbjct: 68 APLDELENDIRSIGLFRSKAKNIKKLCQSLIEDYNG-------EIPKEKSE--LVKLAGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVASVAFNEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L +L K + H++LI FG+ C P CN CP+ CR
Sbjct: 165 LMKKLPKEEWSVS---HHRLIFFGRYHCKAQSPRCNECPLLSLCR 206
>gi|157692734|ref|YP_001487196.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus pumilus
SAFR-032]
gi|157681492|gb|ABV62636.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus pumilus
SAFR-032]
Length = 220
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ L+ E+G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLSKMLIEEYGG-------EVPKDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE Q +
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLEVEQTLMK 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K+ + H++LI FG+ C +P C +CP+ CR
Sbjct: 168 ----KVPEEDWSVTHHRLIFFGRYHCKAQRPQCESCPLLDMCR 206
>gi|386389330|ref|ZP_10074146.1| endonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695709|gb|EIG26260.1| endonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 211
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + L+ +H I VP D+ + L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNGI-------VPEDR--EALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R++ R G+ P + + E ++ LL++ P
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKNVVE-VEKKLLKVVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
D+ + ++H+ LI G+ C KP+C +C + C +
Sbjct: 169 -------------DEFKV-DVHHWLILHGRYTCIARKPHCGSCIIEDLCEY 205
>gi|390453557|ref|ZP_10239085.1| endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Paenibacillus peoriae KCTC 3763]
Length = 224
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ + + L+ ++G ++P + D L+ + G+G
Sbjct: 69 IEELEQDIRRIGLYRNKAKHIHNLCRILIDQYGG-------EIPSEH--DQLVKLPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ VLE ++K L
Sbjct: 120 KTANVVVSTAFNVPAIAVDTHVERVSKRLGFAGWDD-------------SVLE-VEKKLM 165
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
R+ + D+ +L H++LI FG+ C P C CP+ CR
Sbjct: 166 KRVPR-DEWSL--THHRLIFFGRYHCKAQNPQCQVCPLLDVCR 205
>gi|225850162|ref|YP_002730396.1| endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
gi|225646537|gb|ACO04723.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Persephonella marina EX-H1]
Length = 219
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 410 SLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL 469
SLR + Q + ER R+ Y+ L+ K I+EAI G A+ +K+ ++
Sbjct: 46 SLRTKDQVTAEVSERLF-RLADNPYDMLKIPEEK-IAEAIYPAGFYRNKAKVIKEISGKI 103
Query: 470 VREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 529
V++ G VP + D LL ++G+G K+ V L A VDT+V RI+ R
Sbjct: 104 VKDFGG-------KVP--DSIDELLKLKGVGRKTANLVVALGYGKPAICVDTHVHRISNR 154
Query: 530 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589
LG+V + E+ ++ L + P + W + L + FG+ C
Sbjct: 155 LGFVKTKTAEET-EMALRKKVP------REYWNEINDL-----------FVAFGQTICKP 196
Query: 590 SKPNCNACPMRGEC 603
P C+ CP+ C
Sbjct: 197 VSPKCSECPVSSYC 210
>gi|436842028|ref|YP_007326406.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170934|emb|CCO24305.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 217
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS--IDLEWLRDVPPD 487
D L + LR + +++ E I+ G M A R+ +FL+ L R DLE V
Sbjct: 58 DGLTMQGLRKFSEEKLQELIRPSGFFRMKAARLNNFLDFLSRNSAECITDLE---TVETY 114
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ ++ LL ++G+G ++ + + L L+ F VD RI R V E + H
Sbjct: 115 ELREKLLEVKGIGPETADSILLYALNKPVFVVDAYTRRIFNRHMLVH-----EEIDYH-- 167
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
+Q++ L D E H ++ K +C K+ P+C CP+
Sbjct: 168 -------ELQEFFMDVLSH-DVNLFNEYHALIVMTAKNWCKKTSPDCEKCPL 211
>gi|283782700|ref|YP_003373454.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|298253131|ref|ZP_06976923.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
gi|283442104|gb|ADB14570.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|297532526|gb|EFH71412.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
Length = 224
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
+ L+S+ G+G K+ V FPVDT+V R+ RLGW +Q P + +
Sbjct: 122 EALISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 551 PVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
I Y P+ L ++LI G+ CT P C +CP+ C
Sbjct: 177 ---REITAYFAPK-------EWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|15605819|ref|NP_213196.1| endonuclease III [Aquifex aeolicus VF5]
gi|2982981|gb|AAC06594.1| endonuclease III [Aquifex aeolicus VF5]
Length = 213
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
KEI E I G + A+++K+ L+ ++G PD ++ LL + G+G K
Sbjct: 76 KEIEELIYPVGFYRVKAKQLKEIGKILIEKYGG--------KVPDTLEE-LLKLPGVGRK 126
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
V + A VD +V RI R V + PE + L+E+ P K LW
Sbjct: 127 VANLVLSKGFNKPAIVVDVHVHRIVNRWCLVKTKT-PEETERKLMEIVP------KELWS 179
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+++Y L+ FG+ C KP C CP+ C
Sbjct: 180 -----------DINYLLVAFGQTICLPRKPKCEECPVEKYC 209
>gi|283796626|ref|ZP_06345779.1| endonuclease III [Clostridium sp. M62/1]
gi|291076049|gb|EFE13413.1| endonuclease III [Clostridium sp. M62/1]
Length = 271
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 428 RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPD 487
+ D+L E A+++E+ + I G + A + LV + G VP
Sbjct: 65 KYDTL--EKFAAADIRELEQDIHSIGFYHSKARNIIACCRALVEQFGG-------RVP-- 113
Query: 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
+ + L S+ G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+
Sbjct: 114 ETMEELTSLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYALM 172
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ P D L+ +H +IT G+ CT P C C +R +C
Sbjct: 173 KVLP---------------RDHWILWNIH--IITLGRTICTARNPRCRECFLRYDC 211
>gi|403667443|ref|ZP_10932749.1| endonuclease III [Kurthia sp. JC8E]
Length = 219
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ RL+ +G ++P ++ L+++ G+G
Sbjct: 70 LEELEQDIRSIGLFRSKAKNIQKLCQRLLDVYGG-------EIPA--VREELVTLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V RIA RLG + ++LE V ++I K
Sbjct: 121 KTANVVLSVAFGEPAMAVDTHVERIAKRLGLCRWKD-------NVLE---VEQTIMK--- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K + + H+Q+I FG+ C KP C CP+ CR
Sbjct: 168 ----KTPRERWSKAHHQMIFFGRYHCKSQKPGCGECPLFTLCR 206
>gi|315646506|ref|ZP_07899624.1| endonuclease III [Paenibacillus vortex V453]
gi|315278149|gb|EFU41469.1| endonuclease III [Paenibacillus vortex V453]
Length = 228
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LDY ++ ++E+ + I+ G+ A+ +++ + L+ ++G +VP +A D
Sbjct: 62 LDYVSV---PIEELEQDIRRIGLYRNKAKHIQNLCSILIEQYGG-------EVP--EAHD 109
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L+ + G+G K+ V A VDT+V R++ RLG +
Sbjct: 110 ELVKLPGVGRKTANVVVSNAFGVPAIAVDTHVERVSKRLGLAGWKD-------------S 156
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
VLE ++K L R+ + ++ TL H+++I FG+ C P C CP+ CR
Sbjct: 157 VLE-VEKKLMKRVPR-EEWTL--THHRIIFFGRYHCKAQNPQCQVCPLLDVCR 205
>gi|394993581|ref|ZP_10386326.1| endonuclease III [Bacillus sp. 916]
gi|393805693|gb|EJD67067.1| endonuclease III [Bacillus sp. 916]
Length = 219
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + IK G+ A+ ++ ++ E+G +VP D+ D L+++ G+
Sbjct: 68 VSLEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPKDR--DELVNLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 165 LMKKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLPLCR 206
>gi|433773185|ref|YP_007303652.1| endonuclease III [Mesorhizobium australicum WSM2073]
gi|433665200|gb|AGB44276.1| endonuclease III [Mesorhizobium australicum WSM2073]
Length = 270
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ + I+ G+ A+ + L+R+HG +VP D+ D L+ + G+G K+
Sbjct: 109 KVGDHIRTIGLWRNKAKNVIALSQALIRDHGG-------EVPDDR--DELVKLPGVGRKT 159
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 160 ANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGKT-PEQVEQGLLKIIP------------ 206
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ H+ LI G+ C KP+C AC + C+
Sbjct: 207 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|255021570|ref|ZP_05293613.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
gi|254968958|gb|EET26477.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
Length = 238
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G ++ + + L L VD R+A RLGW +
Sbjct: 120 LLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGWA--------------DARVS 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++Q + +L + D R ELH ++ GK +C +S+P C CP+ +CRH
Sbjct: 166 YAALQSRMEAQLRRNDVRGRQELHALIVVHGKTYC-RSRPVCADCPLLRDCRH 217
>gi|420144137|ref|ZP_14651625.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
gi|391855589|gb|EIT66138.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
Length = 214
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E+L A++ ++ + I+ G+ A+ + LV S ++P DK
Sbjct: 61 DPESLAQADIADVEQCIRTIGLYKTKAKNIVKTSQMLVENFNS-------ELPRDK--KL 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V T VDT+V RI+ RL VP + ++ L++L P
Sbjct: 112 LQTLPGVGRKTANVVLGETYGIPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ E H+ LI FG+ CT P C CP+ C+
Sbjct: 171 ----------------EERWVESHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|398355789|ref|YP_006401253.1| endonuclease III [Sinorhizobium fredii USDA 257]
gi|390131115|gb|AFL54496.1| endonuclease III [Sinorhizobium fredii USDA 257]
Length = 275
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
++M +L E LR +AIK G+ A + +L+ + GS +VP
Sbjct: 109 EKMLALGEEKLR--------DAIKTIGLYRNKATNVIALSEKLLADFGS-------EVP- 152
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
K ++ L+++ G+G K+ V + VDT++ RIA R+ P + P+ ++ +L
Sbjct: 153 -KTREELMTLPGVGRKTANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEANL 210
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ + P +KYL Y H+ LI G+ C +P C C + C+
Sbjct: 211 MRVIP-----EKYL------------YHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|430750009|ref|YP_007212917.1| endonuclease III [Thermobacillus composti KWC4]
gi|430733974|gb|AGA57919.1| endonuclease III [Thermobacillus composti KWC4]
Length = 215
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY--LLSIRGL 499
++E+ + I+ G+ A ++ L+ +HG +VP +DY L+ + G+
Sbjct: 69 IEELEQDIRRIGLYRNKAANIQKLCRMLIEKHGG-------EVP----RDYESLVELPGV 117
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V A VDT+V R++ RLG P+ VLE +K
Sbjct: 118 GRKTANVVISNAFGVPAIAVDTHVERVSKRLGIAK----PDD---------SVLEVEKKL 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ RL D+ T+ H++LI FG+ C +PNC CP+ C+
Sbjct: 165 M--RLVPRDEWTIT--HHRLIFFGRYHCKAQRPNCPECPLLDLCK 205
>gi|258510450|ref|YP_003183884.1| endonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477176|gb|ACV57495.1| endonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 220
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E A+ E++E I+E G+ ++ + + LV E+G +VP K++D L+
Sbjct: 65 EGFAKASPDEVAEDIREVGLFRSKSKHIVETARILVDEYGG-------EVP--KSRDRLM 115
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPESLQLHLLELYPVL 553
+ G+G K+ V AF VDT+V R+ R+G PL Q V
Sbjct: 116 ELPGVGRKTANVVVSNAYGVPAFAVDTHVQRVTNRIGLAKSNDPLKTEQQ--------VC 167
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ LW + H+ LI G+ CT KP C+ CP+ C+
Sbjct: 168 AKLPPELWTKA-----------HHALILHGRRVCTARKPKCHICPVADLCQ 207
>gi|238494280|ref|XP_002378376.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
gi|220695026|gb|EED51369.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
Length = 468
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S++++A+R A +K++ EAIK G+ ++ ++ +K L+ + +E+
Sbjct: 240 SVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPSD 299
Query: 474 ------GS------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL 515
GS + L L + ++ + L+ G+G K+ CV L L
Sbjct: 300 LMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRP 359
Query: 516 AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 575
F VDT++ RI LGWVP E LE+ ++ Y L
Sbjct: 360 CFAVDTHIFRICKWLGWVPPDKATEITAFGHLEV----------------RIPDHLKYSL 403
Query: 576 HYQLITFGKVFCTKSKPNCNA 596
H I GK C P C A
Sbjct: 404 HQLFIRHGKT-C----PRCRA 419
>gi|365967585|ref|YP_004949147.1| endonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|415765627|ref|ZP_11482819.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|415768390|ref|ZP_11483692.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416036134|ref|ZP_11573628.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|416048847|ref|ZP_11576433.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|416073952|ref|ZP_11584368.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416107504|ref|ZP_11590471.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|429734757|ref|ZP_19268761.1| endonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|444346704|ref|ZP_21154668.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|347992135|gb|EGY33555.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347996773|gb|EGY37827.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|348005053|gb|EGY45542.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007012|gb|EGY47358.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348653798|gb|EGY69474.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348657959|gb|EGY75537.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
gi|365746498|gb|AEW77403.1| endonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|429151278|gb|EKX94152.1| endonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|443541522|gb|ELT51949.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 211
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 69 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 168 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 205
>gi|261867807|ref|YP_003255729.1| endonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413139|gb|ACX82510.1| endonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 211
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 69 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 167
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 168 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 205
>gi|416057155|ref|ZP_11580096.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348001225|gb|EGY41978.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 224
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 82 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 132
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 133 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 180
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 181 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 218
>gi|416070527|ref|ZP_11583641.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|347999105|gb|EGY39982.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 224
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V + E IK G+ N AE + L+ +H DVP D+A L ++ G+G
Sbjct: 82 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------DVPEDRAA--LEALAGVGR 132
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V H VDT++ R+ R G+ P + ++ V E + K +
Sbjct: 133 KTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEEKLIKVV- 180
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 181 PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 218
>gi|126179382|ref|YP_001047347.1| HhH-GPD family protein [Methanoculleus marisnigri JR1]
gi|125862176|gb|ABN57365.1| DNA-3-methyladenine glycosylase III [Methanoculleus marisnigri JR1]
Length = 226
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD L A+ +I+ I N AER+++F VRE + D + + + ++
Sbjct: 62 LDPRLLAEADTADIAPLIVPSRYYNQKAERIREFSRVYVREFRA-DPAAMAAMETGELRE 120
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL++RG G ++ + + L F VD RI R G+ LPE L +
Sbjct: 121 RLLALRGFGKETTDTILLYVCEKPVFVVDAYTRRIFSRYGF-----LPEGASYDLTQ--- 172
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
L+ + D + H Q++ G C +S P C+ CP+R
Sbjct: 173 -------RLFAENLEPDAELFNDYHAQIVRLGNTICKRS-PLCDRCPIR 213
>gi|420145504|ref|ZP_14652968.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398402878|gb|EJN56169.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 216
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D D EA+ A+ + I G+ A+ MK L+ + + VP +A
Sbjct: 58 DFPDPEAMAAASETALQADIHSIGLYRNKAKHMKAASQALLDDFNGV-------VPSTRA 110
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ L+ + G+G K+ + V AF VDT+V R+ RL VP + ++ +++L
Sbjct: 111 E--LMQLPGVGRKTADVVLADAFGIPAFAVDTHVTRVTKRLRMVPQKATVLEIEQRMMKL 168
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P + LW H+++I FG+ C P C CP+ C
Sbjct: 169 LP------EDLW-----------VTAHHRMIYFGRYHCLARAPKCEQCPLLSMC 205
>gi|254168035|ref|ZP_04874883.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289596043|ref|YP_003482739.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
gi|197623078|gb|EDY35645.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289533830|gb|ADD08177.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
Length = 211
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 19/121 (15%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PD ++ LL + G+G K+ V VDT+V RI+ RLGWV + PE +
Sbjct: 104 PDNLEE-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L+++ ++KY W + +L L+ FG+ C P C+ CP++ C++
Sbjct: 162 LMKVL-----LKKY-WKDINEL-----------LVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 606 F 606
+
Sbjct: 205 Y 205
>gi|331086694|ref|ZP_08335771.1| hypothetical protein HMPREF0987_02074 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409860|gb|EGG89295.1| hypothetical protein HMPREF0987_02074 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 275
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNV 523
G +DL+ ++ +P KAK LL + G+G K +C+ L LHHL AFP+DT++
Sbjct: 183 GEVDLDAIQHLPYAKAKKELLKLFGVGEKVADCICLFALHHLQAFPIDTHI 233
>gi|297584383|ref|YP_003700163.1| endonuclease III [Bacillus selenitireducens MLS10]
gi|297142840|gb|ADH99597.1| endonuclease III [Bacillus selenitireducens MLS10]
Length = 217
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 440 ANV--KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIR 497
ANV +E+ + I+ G+ A+ +K ++ ++ ++P K+K L +
Sbjct: 66 ANVPLEELEQDIRSIGLYRSKAKNIKKLAQSVIDDYQG-------EIP--KSKTELKKLA 116
Query: 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 557
G+G K+ V + A VDT+V R++ RLG + VLE ++
Sbjct: 117 GVGRKTANVVASVAFDEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VE 162
Query: 558 KYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K L + K+ + H+++I FG+ C PNC ACP+ CR
Sbjct: 163 KTL---MKKIPREEWSVTHHRMIFFGRYHCKAQNPNCTACPLSDMCR 206
>gi|333384285|ref|ZP_08475925.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
gi|332826778|gb|EGJ99595.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
Length = 211
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + ++ I IK N A+ + +LV + G PD ++ L
Sbjct: 63 EVMAVSSTDAIYHYIKSVSYPNNKAKNLLGMAKKLVDDFGG--------KVPDSMEE-LE 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+I G+G K+ + ++ + A PVDT+V R++ R+G PE + L++ P
Sbjct: 114 TIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKNPEQTERELIKYIPT-- 171
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
KY L + H+ LI G+ C KP C C + C+ F+
Sbjct: 172 ---KY------------LSKAHHWLILHGRYICVARKPKCEECGLTPYCKFFS 209
>gi|327401491|ref|YP_004342330.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus veneficus
SNP6]
gi|327316999|gb|AEA47615.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus veneficus
SNP6]
Length = 211
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L V+EI I+ G + A ++K+ LV E GS+ PD D L+
Sbjct: 64 EDLATMPVEEIERLIRGVGFYRVKARKLKELAKVLV-EMGSV---------PD-TYDELV 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ V A VDT+V R++ R+G V + PE + L ++ P
Sbjct: 113 KLPGVGRKTANVVLASAFGKAAIGVDTHVHRVSNRMGLVRTKK-PEETENELKKIIP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ LW R+ + ++ FG+ C KP C+ CP C
Sbjct: 169 ---RELWTRVNR-----------AMVGFGQTVCRPLKPLCDECPFTDWC 203
>gi|319892444|ref|YP_004149319.1| endonuclease III [Staphylococcus pseudintermedius HKU10-03]
gi|317162140|gb|ADV05683.1| Endonuclease III [Staphylococcus pseudintermedius HKU10-03]
Length = 224
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ ++ I VP +
Sbjct: 64 DYLAV---DLEELQQDIRSIGLYRNKAKNIQKLSQSLLDQYDGI-------VP--HTHEQ 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ V + A VDT+V R++ RLG + ++ L + P
Sbjct: 112 LEGLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVAEVERRLTSIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W + H+QLI FG+ C KP C CP+ +CR
Sbjct: 171 -----RERWTKS-----------HHQLIFFGRYHCLAKKPKCGVCPLFEDCR 206
>gi|381189828|ref|ZP_09897353.1| endonuclease III [Thermus sp. RL]
gi|380452405|gb|EIA40004.1| endonuclease III [Thermus sp. RL]
Length = 218
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I+ G+ A+ + RLV EHG +VP +KA
Sbjct: 69 DAKALAEATPEEVEPFIRRIGLYKTKAKNLVALAQRLVAEHGG-------EVPREKAA-- 119
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + PE + L L+P
Sbjct: 120 LMRLPGVGWKTATVVLGAAFGIPGIAVDTHVARLARRLCLSEAKS-PEKIGAELEGLFP- 177
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +H+ L+ G+ CT KP C C + C
Sbjct: 178 -----KEDW-----------VFVHHALVLHGRYVCTARKPKCATCVLAPHC 212
>gi|335046189|ref|ZP_08539212.1| endonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759975|gb|EGL37532.1| endonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
Length = 240
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
++KE+ E I G + A+ +K LV E+G +VP D D L ++ G+G
Sbjct: 78 DLKELEEDIHSTGFYHNKAKNIKACAAALVEEYGG-------EVPKDI--DSLTALPGVG 128
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ + H + VDT+V RI+ RLG P + L+E+ P +
Sbjct: 129 RKTGNLILGNIFHIPSIVVDTHVKRISNRLGLADSSD-PTKTEFQLMEVLP------EEF 181
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
W R + +I G+ CT KP C C + C
Sbjct: 182 WIRW-----------NTHIIALGRTLCTSQKPKCELCYLNDLC 213
>gi|85710083|ref|ZP_01041148.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
gi|85688793|gb|EAQ28797.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
Length = 217
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
N + I++AIK G+ N + ++ F L+ EH V PD ++ L+S+ G+G
Sbjct: 73 NDEAIAKAIKPCGLYNNKTKNIRKFCTALIEEHDG--------VVPD-TREGLMSLPGIG 123
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K + V T VDT+V R+ R+G + ++ Q L E P
Sbjct: 124 RKCADIVMSFTFGKDVIAVDTHVHRVCNRIGLTDAKTAEKTAQ-QLEERSP--------- 173
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI FGK C P C+ C + C
Sbjct: 174 --------EWALADGHFWLIQFGKRVCRSRIPKCDICVVSDLC 208
>gi|340782445|ref|YP_004749052.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
gi|340556597|gb|AEK58351.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
Length = 238
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G ++ + + L L VD R+A RLGW +
Sbjct: 120 LLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGWA--------------DARVS 165
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++Q + +L + D R ELH ++ GK +C +S+P C CP+ +CRH
Sbjct: 166 YAALQSRMEAQLRRNDVRGRQELHALIVVHGKTYC-RSRPVCADCPLLRDCRH 217
>gi|169350613|ref|ZP_02867551.1| hypothetical protein CLOSPI_01384 [Clostridium spiroforme DSM 1552]
gi|169292667|gb|EDS74800.1| endonuclease III [Clostridium spiroforme DSM 1552]
Length = 214
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A++ ++ E IK G+ A+ + L+ ++ VP +
Sbjct: 60 DVKTMSQASLIQLQEDIKTIGLYRNKAKNLLAMSKMLIDKYDG-------KVP--SVQKE 110
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 111 LESLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKKDDNVLNVEKKLCR---- 166
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
SI K W + H+Q I FG+ FC + PNC C + C+
Sbjct: 167 --SIPKERWNKA-----------HHQFIFFGRYFCKATNPNCKECKLFDMCK 205
>gi|386319282|ref|YP_006015445.1| endonuclease III [Staphylococcus pseudintermedius ED99]
gi|323464453|gb|ADX76606.1| endonuclease III [Staphylococcus pseudintermedius ED99]
Length = 224
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ ++ I VP +
Sbjct: 64 DYLAV---DLEELQQDIRSIGLYRNKAKNIQKLSQSLLDQYDGI-------VP--HTHEQ 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ V + A VDT+V R++ RLG + ++ L + P
Sbjct: 112 LEGLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVTEVERRLTSIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W + H+QLI FG+ C KP C CP+ +CR
Sbjct: 171 -----RERWTKS-----------HHQLIFFGRYHCLAKKPKCGVCPLFEDCR 206
>gi|312959249|ref|ZP_07773767.1| endonuclease III [Pseudomonas fluorescens WH6]
gi|311286509|gb|EFQ65072.1| endonuclease III [Pseudomonas fluorescens WH6]
Length = 212
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V +SE IK G+ N A+ + + L+ +HGS +VP + ++ L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRLLIEQHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIARGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 --KPYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|402850491|ref|ZP_10898688.1| Endonuclease III [Rhodovulum sp. PH10]
gi|402499258|gb|EJW10973.1| Endonuclease III [Rhodovulum sp. PH10]
Length = 259
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ + IK G+ N A+ + RL+ EHG I VP ++ L ++ G+G K+
Sbjct: 114 LRDYIKTIGLFNTKAKNVIALSERLIAEHGGI-------VP--ATREALETLPGVGRKTA 164
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + F VDT++ R++ R G P + LE+ LE + P+
Sbjct: 165 NVVLNIAYGQETFAVDTHIFRVSNRTGLAPGKTP--------LEVEQKLEQVV----PKD 212
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLA 616
+L H+ LI G+ CT +P C CP+ CR+ SA A
Sbjct: 213 FRL------HAHHWLILHGRYVCTALRPRCPVCPIADLCRYPDKTVPSAGTA 258
>gi|46128543|ref|XP_388825.1| hypothetical protein FG08649.1 [Gibberella zeae PH-1]
Length = 486
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 39/155 (25%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S+D+ +R A + I E+IK G++ + + +K L + E+
Sbjct: 261 SVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKAILELVYEENTKRREAFLEEKSGGKAT 320
Query: 474 ----------GSIDLEWLR------------DVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
G DLE L+ + PD+A L G+G+K+ CV L
Sbjct: 321 GITGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFC 380
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
L +F VDT+V RI+ L W+P + + HL
Sbjct: 381 LQQPSFAVDTHVHRISGWLKWMPRKATRDQTFSHL 415
>gi|149185053|ref|ZP_01863370.1| endonuclease III [Erythrobacter sp. SD-21]
gi|148831164|gb|EDL49598.1| endonuclease III [Erythrobacter sp. SD-21]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 35/178 (19%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ + I+ AIK G+ N ++ F L+ EHG V PD ++ L+
Sbjct: 67 EAMLELDDSAIAAAIKPCGLYNTKTRSIRRFCEALLAEHGG--------VVPD-TREGLM 117
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K + V T VDT+V R+ R+G + ++
Sbjct: 118 RLPGIGRKCADIVLSFTFGKDVIAVDTHVHRVCNRIGLTAAKTAEKTAA----------- 166
Query: 555 SIQKYLWPRLCKLDQRT----LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+LD+R+ L + H+ L+ FGK CT P C CP+ C + +
Sbjct: 167 -----------QLDERSPEWALGDGHFWLVQFGKRICTARAPKCQTCPVGSLCEAYPA 213
>gi|418032607|ref|ZP_12671090.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471470|gb|EHA31591.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 185
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ ++ ++G +VP D+ D L+ + G+G
Sbjct: 36 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DELVKLPGVGR 86
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE ++K L
Sbjct: 87 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTLM 132
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C P C CP+ CR
Sbjct: 133 RKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 172
>gi|374622424|ref|ZP_09694949.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
gi|373941550|gb|EHQ52095.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
Length = 221
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 27/177 (15%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD E+L +++ I+ G N+ A R++ F + + + G L R + +
Sbjct: 59 LDAESLAALPRNDLAGLIRPSGYFNVKAGRLQAFCHWYLEQGGETAL---RGWSTEALRR 115
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL----GWVPLQPLPESLQLHLL 547
LLS++G+G ++ + + L F VD R+ RL G P L ++ L
Sbjct: 116 GLLSVKGVGPETADDILLYAFERPVFVVDAYTRRLFARLELAGGDEPYDVLRTGVEAVLG 175
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
PVL E H ++ GK FC + +P+C CP+R C+
Sbjct: 176 ADVPVLN-------------------EFHALIVAHGKTFC-RPRPSCEGCPLRAMCQ 212
>gi|289192102|ref|YP_003458043.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
gi|288938552|gb|ADC69307.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
Length = 222
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
W+++ K + N+ K E + LD E + + ++ E IK G N+ A+R+K+
Sbjct: 46 WKNVEKAI--NNLKNE------NLLDEEKILNVDEDKLKELIKPAGFYNLKAKRLKNVTK 97
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
+V +G+ + D + LLSI G+G ++ + + L L +F VD R+
Sbjct: 98 FIVDNYGNTEEMAKTDKDTLTLRAELLSINGVGKETADSILLYALDRESFVVDAYTKRMF 157
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587
RLG + + + ++ E +K L P+ D E H ++ K FC
Sbjct: 158 SRLGIINEKAKYDEIK----------EIFEKSL-PK----DLEIYKEYHALIVEHCKKFC 202
Query: 588 TKSKPNCNACPM 599
K KP C+ CP+
Sbjct: 203 RK-KPLCDNCPI 213
>gi|110635893|ref|YP_676101.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
gi|110286877|gb|ABG64936.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
Length = 268
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
+++ E I+ G+ A+ + L+R+HG VP D+ + L + G+G K
Sbjct: 103 EKLGEYIRTIGLWRNKAKNVIALCEALIRDHGG-------QVPEDR--EALTKLPGVGRK 153
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V + H VDT++ RI+ R+ P + PE ++ LL++ P
Sbjct: 154 TANVVLNVAFGHPTMAVDTHIFRISNRILLAPGKT-PEEVEQALLKVIP----------- 201
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
Q L H+ LI G+ C KP+C AC + C+
Sbjct: 202 ------QHYLLHAHHWLILHGRYVCKARKPDCPACVIADLCK 237
>gi|82596217|ref|XP_726170.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481466|gb|EAA17735.1| Drosophila melanogaster CG9272 gene product [Plasmodium yoelii
yoelii]
Length = 386
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLH-HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L+ + G+G K + + L+ H VD +V RI+ RL WV + ++ Q+ L
Sbjct: 273 LIKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLNWVYTKNEADT-QIKLKSF-- 329
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
+ K LW EL++ L+ FG+V C KP C C + C+++ F
Sbjct: 330 ----VDKELWS-----------ELNHLLVGFGQVICKGKKPLCEKCTLTDYCQYYNDNFV 374
>gi|48477970|ref|YP_023676.1| endonuclease III [Picrophilus torridus DSM 9790]
gi|48430618|gb|AAT43483.1| endonuclease III [Picrophilus torridus DSM 9790]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 29/176 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKD 491
D L A +++ + IK G +N+ ++R+ D +++ + G++ PD ++
Sbjct: 56 DAAGLAMAKPEDVKKIIKNVGFSNVKSKRVIDAAKYILKNYNGNV---------PDTYEE 106
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L+ I+G+G K+ V + + A PVDT+V RI R+G+V + PE + L ++ P
Sbjct: 107 -LMKIKGVGTKTANIVLTQSFNKPAIPVDTHVHRIVNRIGFVNTR-TPEETETELKKIIP 164
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ I E + L+ FGK C P C+ C +R C +++
Sbjct: 165 LEYQI-----------------EFNPVLVEFGKNICKPVSPKCDMCLVRDCCDYYS 203
>gi|390991280|ref|ZP_10261549.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|418520509|ref|ZP_13086558.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|372554007|emb|CCF68524.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|410703890|gb|EKQ62378.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 357
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLWP----RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLAIIHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATALL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + + D YE DE+P I + ++LQ + K+ L+
Sbjct: 268 SLWTLPQAETESGMRAWFAAHIDGNYERADEMPPIVHAFSHYRLHLQPWRLRKVALR 324
>gi|330836808|ref|YP_004411449.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329748711|gb|AEC02067.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 224
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +L A++ ++ E I+ G N A + D L + +G W+ P ++
Sbjct: 66 DVRSLAGADINKVKEIIRSTGHFNTKARHIIDCATILQKTYGG----WI----PSTMEE- 116
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ CV VDT+ GR++ RL V PE ++ + EL P
Sbjct: 117 LTALPGVGRKTASCVLGEVYGQPVIIVDTHFGRVSQRLELV-TSARPEIIEQQMKELLP- 174
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+Q Y L FG+ CT KP C+ CP+ C
Sbjct: 175 -PDMQ---------------YRFSMTLNLFGRNCCTARKPQCHNCPLYALC 209
>gi|298530217|ref|ZP_07017619.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298509591|gb|EFI33495.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 407 DWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466
+W +++K + + ++M SLD E L +E I+ G + A R+K+ L
Sbjct: 43 NWSNVQKAINNLKSRDLLHPEKMASLDDELL--------AELIRPSGYFRIKARRLKNLL 94
Query: 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 526
+R + L L + +D LL ++G+G ++ + + L L +F VD RI
Sbjct: 95 E-FLRLECAYHLPDLSSQDLQQLRDKLLQVKGIGPETADSILLYALEKPSFVVDAYTSRI 153
Query: 527 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586
R V E + H ++ + RL + D E H L+ GK +
Sbjct: 154 LNRHLLVH-----EDIDYH---------ELRDFFMDRLPR-DVALYNEYHALLVRTGKKW 198
Query: 587 CTKSKPNCNACPM 599
C K+ P C+ CP+
Sbjct: 199 CNKNNPRCDGCPL 211
>gi|398306834|ref|ZP_10510420.1| endonuclease III [Bacillus vallismortis DV1-F-3]
Length = 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ ++G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPEDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|347753384|ref|YP_004860949.1| endonuclease III [Bacillus coagulans 36D1]
gi|347585902|gb|AEP02169.1| endonuclease III [Bacillus coagulans 36D1]
Length = 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ L+ E+G R+VP + ++ L+ + G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLCRMLIEEYG-------REVP--QTREELMKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ + ++ L++ P E W
Sbjct: 121 KTANVVLSVAFGIPAIAVDTHVERVSKRLGFCRYKDSVLEVEQTLMKKVPKEE------W 174
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
H+++I FG+ C +P C CP+ CR
Sbjct: 175 S-----------ITHHRMIFFGRYHCKAQRPQCEICPLLDLCR 206
>gi|389573143|ref|ZP_10163219.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus sp. M 2-6]
gi|388427300|gb|EIL85109.1| DNA-(apurinic or apyrimidinic site) lyase [Bacillus sp. M 2-6]
Length = 220
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ L+ ++G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLSQMLIEDYGG-------EVPRDR--DELIKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE +++ L
Sbjct: 121 KTANVVVSVAFGIPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEQTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C +P C +CP+ CR
Sbjct: 167 KKVPKEDWSVT---HHRLIFFGRYHCKAQRPQCESCPLLDMCR 206
>gi|198276951|ref|ZP_03209482.1| hypothetical protein BACPLE_03156 [Bacteroides plebeius DSM 17135]
gi|198270476|gb|EDY94746.1| endonuclease III [Bacteroides plebeius DSM 17135]
Length = 221
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 31/173 (17%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL + + E I+ N A+ + LVR+ + PD ++ L+
Sbjct: 63 EALAATTPEVVFEYIRSVSYPNNKAKHLVGMAQMLVRD--------FQSTVPDTLEE-LI 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP---LQPLPESLQLHLLELYP 551
+ G+G K+ ++ + + A VDT+V R++ R+G VP PL QL
Sbjct: 114 KLPGVGRKTANVIQSVVFNKAAMAVDTHVFRVSHRIGLVPRTCTTPLATEKQL------- 166
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ I + L P H+ LI G+ CT P C +C + G C+
Sbjct: 167 -VKYIPESLIP-----------TAHHWLILHGRYVCTARAPKCESCGLNGICK 207
>gi|149183171|ref|ZP_01861619.1| endonuclease III [Bacillus sp. SG-1]
gi|148849106|gb|EDL63308.1| endonuclease III [Bacillus sp. SG-1]
Length = 216
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + I+ G+ A+ ++ L+ E+G +VP +++D L+ + G+
Sbjct: 68 VSLEELQQDIRSIGLYRNKAKNIRSLCELLLEEYGG-------EVP--QSRDELVKLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVVSVAFGEPALAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L + K+ + + H++LI FG+ C P C CP+ CR
Sbjct: 165 L---MRKIPREKWTDTHHRLIFFGRYHCKAQSPQCEICPLLHLCR 206
>gi|116193597|ref|XP_001222611.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
gi|88182429|gb|EAQ89897.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
Length = 549
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 15/165 (9%)
Query: 389 NISKSKKRKADGEKKNAIDWESLR-------KEVQRNSGKQ-ERSRDRMDSLDYEALRCA 440
N+ + R G +I+WE +R +V + +G RS+ LD
Sbjct: 300 NLVRYYGRGQVGTSAGSINWEKVRLSTHAELTQVIKVAGNGPNRSQHIKRILDMVHEENV 359
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
++ E G +AE K L+ L +H +R + D+A LS G+G
Sbjct: 360 QRAKMQRPETEAGQTQAVAEAGKTALHLLSLDH-------MRAMSKDEAMAKFLSYPGIG 412
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
+K+ CV L L F VDT+V + LGWVP + P++ H
Sbjct: 413 IKTAACVTLFCLQKPCFAVDTHVHKFCRWLGWVPDKADPDNCFRH 457
>gi|70726461|ref|YP_253375.1| endonuclease-like protein [Staphylococcus haemolyticus JCSC1435]
gi|68447185|dbj|BAE04769.1| endonuclease-like protein [Staphylococcus haemolyticus JCSC1435]
Length = 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVTQVEDRLCSIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K W R H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 171 -----KERWSRS-----------HHQLIFFGRYHCLARKPKCDICPLLDDCR 206
>gi|408381370|ref|ZP_11178919.1| endonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815837|gb|EKF86400.1| endonuclease III [Methanobacterium formicicum DSM 3637]
Length = 213
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 441 NVKEISEA--------IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ EI+EA I+ G ++ A+R+ + +L L+ + PD K+
Sbjct: 59 TINEIAEADPTLLEPLIRPAGFYHVKAQRIVEVSRKL--------LDKFKGQVPDDMKN- 109
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G K+ CV + A PVD +V RI+ RLG V + PE + L ++ P
Sbjct: 110 LLELPGVGRKTANCVLVYGFQIPAIPVDVHVHRISNRLGLVNTKT-PEETEAELEKIVP- 167
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ W EL+ ++ FG+ C P CP++ C ++
Sbjct: 168 -----REYW-----------IELNDLMVQFGQTICRPQSPRHEECPLQELCDYY 205
>gi|52080742|ref|YP_079533.1| endonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645300|ref|ZP_07999533.1| nth protein [Bacillus sp. BT1B_CT2]
gi|404489625|ref|YP_006713731.1| endonuclease 3 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682708|ref|ZP_17657547.1| endonuclease III [Bacillus licheniformis WX-02]
gi|52003953|gb|AAU23895.1| endonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348615|gb|AAU41249.1| endonuclease 3 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317393109|gb|EFV73903.1| nth protein [Bacillus sp. BT1B_CT2]
gi|383439482|gb|EID47257.1| endonuclease III [Bacillus licheniformis WX-02]
Length = 220
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ L+ ++G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLCKMLLEDYGG-------EVPRDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + ++ L++ P E W
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKDSVMEVEKTLMKKVPESE------W 174
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
H++LI FG+ C +P C CP+ CR
Sbjct: 175 S-----------VTHHRLIFFGRYHCKAQRPKCEECPLFSLCR 206
>gi|355682119|ref|ZP_09062320.1| endonuclease III [Clostridium citroniae WAL-17108]
gi|354811228|gb|EHE95862.1| endonuclease III [Clostridium citroniae WAL-17108]
Length = 223
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + I G +M A+ + LV + G VP + + L S+ G+
Sbjct: 82 ADLKELEQDIHSIGFYHMKAKNIIACCRDLVEKFGG-------KVP--ETIEELTSLAGV 132
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + + VDT+V RI+ +LG + PE ++ L+ + P
Sbjct: 133 GRKTANVIRGNIYNEPSIVVDTHVKRISGKLGLTKEED-PEKIEYDLMRVLPK------- 184
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D L+ +H +IT G+ C +P C C +R EC
Sbjct: 185 --------DHWILWNIH--IITLGRTICIARRPKCVECFLRDEC 218
>gi|319781489|ref|YP_004140965.1| endonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167377|gb|ADV10915.1| endonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 274
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ E I+ G+ A+ + L+R+HG +VP ++ D L+ + G+G K+
Sbjct: 110 VGEYIRTIGLWRNKAKNVIALSQALIRDHGG-------EVPDNR--DELVKLPGVGRKTA 160
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 161 NVVLNMAFGQHTMAVDTHILRIGNRLGLAPGKT-PEQVEQGLLKIIP------------- 206
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ H+ LI G+ C KP+C AC + C+
Sbjct: 207 ----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|255946089|ref|XP_002563812.1| Pc20g13320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588547|emb|CAP86661.1| Pc20g13320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 513
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 50/170 (29%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMK------------------------DFL 466
S++++A+R A VK++ EAIK G+ ++ ++ +K D +
Sbjct: 260 SVNWDAVRQATVKDVFEAIKSGGLADIKSKNLKAILDIVHKDNQARRASLLDSESKNDSV 319
Query: 467 NRLVREHGSID--------------LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTL 512
++L+ E D L L ++ ++A L+ G+G K+ CV L L
Sbjct: 320 SKLLPEKAGKDKQYEIACADQNFLSLNHLHNLTTEEAMTDLIKYPGIGPKTAACVILFCL 379
Query: 513 HHLAFPVDTNVGRIAVRLGWVPLQP------------LPESLQLHLLELY 550
F VDT++ R+ LGW+P + +P+ L+ L +L+
Sbjct: 380 QRPCFAVDTHIFRLCRWLGWIPARSNEVTAFSHLEVRIPDHLKYSLHQLF 429
>gi|372270183|ref|ZP_09506231.1| endonuclease III [Marinobacterium stanieri S30]
Length = 211
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + L+ HGS +VP D+A L
Sbjct: 62 EAMLALGVDGVKEHIKTIGLFNTKAENVIKTCRMLIELHGS-------EVPQDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ V VDT++ R++ R G P + VL+
Sbjct: 113 KLPGVGRKTANVVLNTAFGQPTMAVDTHIFRVSNRTGIAPGKT--------------VLD 158
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K L + + L + H+ LI G+ CT KP C +C + C
Sbjct: 159 VEKKLLR----HVPKPFLVDAHHWLILHGRYVCTARKPKCGSCLIEDLC 203
>gi|57641076|ref|YP_183554.1| endonuclease III [Thermococcus kodakarensis KOD1]
gi|57159400|dbj|BAD85330.1| endonuclease III [Thermococcus kodakarensis KOD1]
Length = 246
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E + V+E+ E ++++G+ + + + I LE PD +
Sbjct: 78 DIETIANTPVEEMQEFLRKQGVG------LWKTKGEWIVKASKIILERYGGKVPDDIHE- 130
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K V A PVDT+V RI+ RLG P + PE ++ +L L P
Sbjct: 131 LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVAPEKVEEYLTALIPK 190
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+K+++ +++ ++ G+ C P C CP+R C
Sbjct: 191 ----EKWIY-------------VNHAMVDHGRSICRPINPKCEECPLREFC 224
>gi|223043195|ref|ZP_03613242.1| endonuclease III [Staphylococcus capitis SK14]
gi|314933636|ref|ZP_07841001.1| endonuclease III [Staphylococcus caprae C87]
gi|417907904|ref|ZP_12551671.1| endonuclease III [Staphylococcus capitis VCU116]
gi|222443406|gb|EEE49504.1| endonuclease III [Staphylococcus capitis SK14]
gi|313653786|gb|EFS17543.1| endonuclease III [Staphylococcus caprae C87]
gi|341594991|gb|EGS37669.1| endonuclease III [Staphylococcus capitis VCU116]
Length = 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V + + VDT+V R++ RLG + ++ L ++ P
Sbjct: 112 LESLAGVGRKTANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCDIIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W R H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 171 -----RERWNRS-----------HHQLIFFGRYHCLARKPKCDICPLLDDCR 206
>gi|347542986|ref|YP_004857623.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986022|dbj|BAK81697.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 209
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 479 EWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 538
E+ +VP K +D L+++ G+G K+ V AF VD +V R++ R+G +
Sbjct: 98 EFNGEVP--KTRDELITLPGVGRKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSKT 154
Query: 539 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACP 598
PE +L L++ +I + LW +C H+ +I G+ CT KPNC C
Sbjct: 155 PEQTELELMK------NIDESLWT-IC----------HHTIIFHGRRCCTSRKPNCGECK 197
Query: 599 MRGECRHF 606
++ C+++
Sbjct: 198 IKEYCKYY 205
>gi|345863907|ref|ZP_08816114.1| putative endonuclease [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125017|gb|EGW54890.1| putative endonuclease [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 189
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
+D+LD + E+++ I+ G N+ A R+K + L G L+ L D +
Sbjct: 26 IDALDLHQIDRMPPDELAQLIRPAGYFNVKARRLKHLCSFLCAHAGQ--LQPLSDKALRR 83
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
A LS+ G+G ++ + + L F +D RI RLG VP E+L+L
Sbjct: 84 A---FLSVNGIGPETADDILLYAFERPVFVIDAYTRRIFSRLGMVPTHLAYEALRL---- 136
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ ++ L P D E H ++ K C K +P+C C + EC
Sbjct: 137 ------AFERALGP-----DPELFNEYHALIVRHAKEACRK-QPDCTVCCLAREC 179
>gi|295690296|ref|YP_003593989.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
gi|295432199|gb|ADG11371.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
Length = 241
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 31/217 (14%)
Query: 390 ISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAI 449
IS+ K G ++A+ W++ R R +++ L A V ++ I
Sbjct: 35 ISQLVKSSISGRTQDAVSWDAFL-------------RLRAAFKNWDDLADAPVAAVARII 81
Query: 450 KERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV- 507
++ A + L R++R+ G + L L+ + D+A+ L ++ G+G+K CV
Sbjct: 82 EDVTFPADKARYLTTAL-RMIRDKVGWLSLSHLKGLTVDQARWELQALPGVGVKVAACVL 140
Query: 508 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 567
L A VD++V R+A R+G V + Y L + W
Sbjct: 141 NFSDLAMRALVVDSHVDRVAKRIGLVGAGDTTHT--------YHTLMGLAPDAW------ 186
Query: 568 DQRTLYELHYQLIT-FGKVFCTKSKPNCNACPMRGEC 603
L+ELH+ + G++ C P C ACP++ C
Sbjct: 187 TADDLFELHWLMKRGLGQMLCPHEGPKCGACPVKAMC 223
>gi|423093915|ref|ZP_17081711.1| endonuclease III [Pseudomonas fluorescens Q2-87]
gi|397888622|gb|EJL05105.1| endonuclease III [Pseudomonas fluorescens Q2-87]
Length = 212
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + V+ +SE IK G+ N A+ + + L+ HG ++P + ++ L
Sbjct: 62 ETIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGG-------EIP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|387770312|ref|ZP_10126495.1| endonuclease III [Pasteurella bettyae CCUG 2042]
gi|386904674|gb|EIJ69463.1| endonuclease III [Pasteurella bettyae CCUG 2042]
Length = 211
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + V + E IK G+ N AE + L+ +H S VP ++ + L
Sbjct: 62 EDILALGVDGLKEYIKTIGLYNAKAENIIKTCRTLIEKHHS-------QVPENR--EALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R++ R G+ P + + E V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKDVLE-----------VEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI FG+ C KP C +C + C +
Sbjct: 162 KLNKVV-PDEFKMD------VHHWLILFGRYTCIARKPRCGSCLIEDLCEY 205
>gi|345882993|ref|ZP_08834444.1| endonuclease III [Prevotella sp. C561]
gi|345044205|gb|EGW48249.1| endonuclease III [Prevotella sp. C561]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 27/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A EI + +K N A+ + + LV + G +VP D +
Sbjct: 61 DAKTMATATSDEIFDYVKSVSYPNSKAKHLVEMSKMLVEKFGG-------EVPSDP--NA 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYP 551
L+++ G+G K+ ++ + VDT+V R++ RLG VP P ++ +L++ P
Sbjct: 112 LITLPGVGRKTANVIQAVWFGKPTLAVDTHVYRVSHRLGLVPSTANTPRKVEDYLMKNIP 171
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + W ++ G+ C +KP+C CP C
Sbjct: 172 TEEVTDAHHW-----------------ILLHGRYVCKSAKPDCEHCPFDDMC 206
>gi|15921690|ref|NP_377359.1| endonuclease III [Sulfolobus tokodaii str. 7]
gi|342306469|dbj|BAK54558.1| DNA glycosylase/AP lyase [Sulfolobus tokodaii str. 7]
Length = 224
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 21/164 (12%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E+ E IK G++N A +K+ L + ID L +P DK ++ L++ G+G K+
Sbjct: 77 ELKEVIKIVGLSNSKARYIKNI--ALFFKRNKID--ELTRLPCDKLRELFLTVDGIGEKT 132
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
+ V + FPVDT++ R+ RLG +L P + I +
Sbjct: 133 ADVVLVNCFKCKFFPVDTHIKRVMSRLG--------------ILGSKPQYKEIADFF--- 175
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
+ L++ L ELH LI G+ CT KP C+ C + C +F+
Sbjct: 176 ISSLNEDELLELHQLLILHGRKTCTAKKPLCDKCVINYCCEYFS 219
>gi|312110487|ref|YP_003988803.1| endonuclease III [Geobacillus sp. Y4.1MC1]
gi|336234949|ref|YP_004587565.1| endonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423719504|ref|ZP_17693686.1| endonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311215588|gb|ADP74192.1| endonuclease III [Geobacillus sp. Y4.1MC1]
gi|335361804|gb|AEH47484.1| endonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383367596|gb|EID44873.1| endonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 216
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ ++ L+ ++G VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLCAMLIEKYGG-------QVPQDR--DELMKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ + VLE ++K L
Sbjct: 121 KTANVVVSVAFGIPAIAVDTHVERVSKRLGFCRWED-------------SVLE-VEKTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K + H+++I FG+ C P C+ CP+ CR
Sbjct: 167 KKIPKEEWSIT---HHRMIFFGRYHCKAQSPQCHVCPLLDLCR 206
>gi|357638488|ref|ZP_09136361.1| endonuclease III [Streptococcus urinalis 2285-97]
gi|418416712|ref|ZP_12989911.1| endonuclease III [Streptococcus urinalis FB127-CNA-2]
gi|357586942|gb|EHJ56350.1| endonuclease III [Streptococcus urinalis 2285-97]
gi|410874530|gb|EKS22461.1| endonuclease III [Streptococcus urinalis FB127-CNA-2]
Length = 218
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P+ KD L S+ G+G K+ V VDT+V R++ RL +
Sbjct: 107 PNNHKD-LESLPGVGRKTANVVLAEVYGVPVIAVDTHVARVSKRL--------------N 151
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ E + I+K L + K+ ++ H++LI FG+ C KP C+ CP++ CR+
Sbjct: 152 ISEESADVTQIEKDL---MAKIPKKDWIATHHRLIFFGRYHCLAKKPKCDICPLQSYCRY 208
Query: 606 FASAFASAR 614
+ + R
Sbjct: 209 YQTQVVKTR 217
>gi|327314646|ref|YP_004330083.1| endonuclease III [Prevotella denticola F0289]
gi|326945099|gb|AEA20984.1| endonuclease III [Prevotella denticola F0289]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + + A V+E+ E +K N A+ + + LV + G +VP D +
Sbjct: 61 DAKTMAKATVEEVLEYVKSVSYPNAKAKHLVEMSKMLVEKFGG-------EVPSDP--NA 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYP 551
L+ + G+G K+ ++ + VDT+V R++ RLG VP P ++ +L++ P
Sbjct: 112 LVMLPGVGRKTANVIQAVWFGKPTLAVDTHVYRVSHRLGLVPSTANTPRKVEDYLMKNIP 171
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E + + H+ ++ G+ C +KP+C CP C
Sbjct: 172 TEE-----------------VSDAHHWILLHGRYICKSAKPDCEHCPFDDIC 206
>gi|67540934|ref|XP_664241.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
gi|40738976|gb|EAA58166.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
Length = 1085
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 62/207 (29%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S++++A+R A VK++ EAIK G+ + ++ +K L+ + +E+
Sbjct: 859 SVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNSDS 918
Query: 474 ------------------------GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRL 509
+ L +L +P ++ L+ G+G K+ CV L
Sbjct: 919 GKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACVLL 978
Query: 510 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 569
L F VDT++ RI L WVP E LE+ ++
Sbjct: 979 FCLQRPCFAVDTHIFRICKWLNWVPPDRATEITAFSHLEV----------------RIPD 1022
Query: 570 RTLYELHYQLITFGKVFCTKSKPNCNA 596
Y LH LI G KS P C A
Sbjct: 1023 HLKYPLHQLLIRHG-----KSCPRCRA 1044
>gi|393216983|gb|EJD02473.1| DNA glycosylase [Fomitiporia mediterranea MF3/22]
Length = 570
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 33/192 (17%)
Query: 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
A R+ ++V+E+G + PD AKD + ++ G+G S + + +H
Sbjct: 172 AARLLSGAQKIVKEYGGLF--------PDNAKDMMANVPGIGRYSAGAISSIAYNHCESV 223
Query: 519 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL--DQRTLYELH 576
+D NV R+ R+ L LH P ++ LW + D ++
Sbjct: 224 LDGNVNRLLSRV-----------LALH---ANPKSKATLDVLWDGAAAMVKDTEEPGNIN 269
Query: 577 YQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSI---VSSTMPTM 633
LI G C P+C ACP+R C + + RL PEE I + P +
Sbjct: 270 QALIELGSTVCKPRDPDCAACPLRDYCNAYRE--SKGRL----PEEDDIEELCTLCEPVL 323
Query: 634 AERNPSVVINPM 645
+ + V PM
Sbjct: 324 SSEDTGVTRYPM 335
>gi|315425726|dbj|BAJ47382.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
gi|343484521|dbj|BAJ50175.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
Length = 217
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + A+V+ ++ IK G A+R+K + + G VP ++A+
Sbjct: 62 DPRDIASADVRTVARLIKPVGFYRQKAKRIKQLAKIVYGKLGG-------RVPDNRAE-- 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
LL + G+G KS + V + + VDT+V +A RLG + +
Sbjct: 113 LLKLPGVGPKSADIVLSIAFNRPEIAVDTHVETVAKRLG--------------IADGKAG 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
E ++K L L K D L +++ + FG+ C + +P C+ CP+ CR++ A
Sbjct: 159 YEEVKKAL-TTLSKPDDIRL--INHLFVKFGREICRRPRPRCSLCPITEYCRYYREVIA 214
>gi|118395856|ref|XP_001030273.1| HhH-GPD superfamily base excision DNA repair protein [Tetrahymena
thermophila]
gi|89284570|gb|EAR82610.1| HhH-GPD superfamily base excision DNA repair protein [Tetrahymena
thermophila SB210]
Length = 371
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 34/164 (20%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E+ E IK+ N E +K+ + + V PD+ +D L+ I+G+G K
Sbjct: 225 ELKEIIKQVNFNGKKVEYIKNAAEVIKNTYNY--------VIPDQYED-LIKIKGIGPKV 275
Query: 504 ----VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
++C T+ VDT+V RI+ RL WV + PE ++ L +L
Sbjct: 276 ANLFLQCAYNKTV---GIAVDTHVHRISNRLEWVSTKT-PEQTRIELEKL---------- 321
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LD++ +++ L+ +G+ C P C CP++ +C
Sbjct: 322 -------LDKKYWEDVNNLLVGYGQSVCKPQNPQCQICPVKDKC 358
>gi|46200194|ref|YP_005861.1| endonuclease III [Thermus thermophilus HB27]
gi|46197822|gb|AAS82234.1| endonuclease III [Thermus thermophilus HB27]
Length = 220
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I+ G+ A+ + RLV E+G +VP K K+
Sbjct: 72 DAKALAEATPEEVEPYIRRIGLYRTKAKNLVALARRLVEEYGG-------EVP--KEKEA 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + + PE + L L+P
Sbjct: 123 LMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCFSEAKA-PERIGKDLEALFP- 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +H+ L+ G+ CT +P C AC + C
Sbjct: 181 -----KEDW-----------VFVHHALVLHGRYVCTARRPRCGACVLAPYC 215
>gi|302890387|ref|XP_003044078.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
gi|256724997|gb|EEU38365.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWL-RDVPPDKAKDY 492
Y ++ ++ +A++ GM N A+ + L + ++G DL+ L D+ D
Sbjct: 86 YSSIVKGGNDKLVDALRPGGMQNRKAKILMTLLKDVEAKYGKWDLQHLFTKTDDDEVIDE 145
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
+ G+G K C+ + L F VDT++ R++ GW P + + Q HL P
Sbjct: 146 VTKFWGIGPKCAHCLLSICLKRDVFAVDTHIYRLSGLWGWRPAKATKLTAQAHLDARIP- 204
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ LHY +I+ G C K + N N RG C+
Sbjct: 205 ----------------NELKFPLHYLMISHGSS-CPKCRGNGNP---RGHCK 236
>gi|438000126|ref|YP_007183859.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451813058|ref|YP_007449511.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339360|gb|AFZ83782.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451779027|gb|AGF49907.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 210
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 27/163 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
E+ I++ G+ +M A + + +V + G+ VP ++++ L S+ G+G K+
Sbjct: 72 EMENLIRKIGLYHMKARNILKTCDLIVNKFGN-------KVP--ESREELESLPGVGRKT 122
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + + VDT+V R+A R G + P ++ L++ P +KYL
Sbjct: 123 ANVVLNVAFNQPTIAVDTHVFRVANRTG-IAKGKNPLDVEKKLIKNIP-----KKYL--- 173
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ H+ L+ FG+ CTK P C+ C ++ C ++
Sbjct: 174 ---------HNAHHSLVLFGRYICTKRNPKCDQCTIKNLCEYY 207
>gi|55980081|ref|YP_143378.1| endonuclease III [Thermus thermophilus HB8]
gi|55771494|dbj|BAD69935.1| endonuclease III [Thermus thermophilus HB8]
Length = 220
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +AL A +E+ I+ G+ A+ + RLV E+G +VP K K+
Sbjct: 72 DAKALAEATPEEVEPYIRRIGLYRTKAKNLVALARRLVEEYGG-------EVP--KEKEA 122
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A RL + + PE + L L+P
Sbjct: 123 LMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCFSEAKA-PERIGKDLEALFP- 180
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K W +H+ L+ G+ CT +P C AC + C
Sbjct: 181 -----KEDW-----------VFVHHALVLHGRYVCTARRPRCRACVLAPYC 215
>gi|345878749|ref|ZP_08830448.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344224215|gb|EGV50619.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 229
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDK 488
+D+LD + E+++ I+ G N+ A R+K L +R H L+ L D +
Sbjct: 66 IDALDLHQIDRMPPDELAQLIRPAGYFNVKARRLKH-LCSFLRAHAG-QLQPLSDKALRR 123
Query: 489 AKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 548
A LS+ G+G ++ + + L F +D RI RLG VP E+L+L
Sbjct: 124 A---FLSVNGIGPETADDILLYAFERPVFVIDAYTRRIFSRLGMVPTHLAYEALRL---- 176
Query: 549 LYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ ++ L P D E H ++ K C K +P+C C + EC
Sbjct: 177 ------AFERALGP-----DPELFNEYHALIVRHAKEACRK-QPDCTVCCLAREC 219
>gi|307595236|ref|YP_003901553.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
gi|307550437|gb|ADN50502.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
Length = 307
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ-- 543
P + K YLL I+ L L+ + V+ + P+D ++ RIA RLG V L+ L
Sbjct: 170 PVRKKAYLL-IKFLVLRGLLKVKQ---QEIKLPIDNHLTRIAYRLGIVKLEDWVLELMRR 225
Query: 544 -LHL-LELYPVLESIQKYLWP---RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACP 598
+H EL L + W R+ KLD L + ++ FG+ C + KP C+ CP
Sbjct: 226 DVHFSRELDVELRLAVRDAWDAVIRIGKLDPIALDDFLWR---FGRTICVRDKPQCDKCP 282
Query: 599 MRGECRHFA 607
++G C +A
Sbjct: 283 LKGVCSAYA 291
>gi|383788949|ref|YP_005473518.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
gi|381364586|dbj|BAL81415.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
Length = 218
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K+I + I G A+++K+ L+ ++ VP D + LL ++G+G K
Sbjct: 76 KDIEKLIYPVGFYKRKAKQIKEVAKTLIEKYDG-------RVPNDLEE--LLKLKGVGRK 126
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V VDT+V RI+ RLGWV + PE ++ L ++ P +KY W
Sbjct: 127 TANLVITEAFDDYGICVDTHVHRISNRLGWVKTKN-PEQTEMELRKILP-----KKY-WK 179
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + L+TFG+ C P C+ CP+ C
Sbjct: 180 TINPI-----------LVTFGQNICKPISPLCSKCPIEPLC 209
>gi|308069414|ref|YP_003871019.1| endonuclease III [Paenibacillus polymyxa E681]
gi|305858693|gb|ADM70481.1| Probable endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Paenibacillus polymyxa E681]
Length = 224
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A+ + + L+ ++G ++P + D L+ + G+G
Sbjct: 69 LEELEQDIRRIGLYRNKAKHIYNLCRILIDQYGG-------EIPSEH--DQLVKLPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V RI+ RLG+ VLE ++K L
Sbjct: 120 KTANVVVSTAFNVPAIAVDTHVERISKRLGFAGWDD-------------SVLE-VEKKLM 165
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
R+ + D+ +L H++LI FG+ C P C CP+ CR
Sbjct: 166 KRVPR-DEWSL--THHRLIFFGRYHCKAQNPQCQVCPLLDVCR 205
>gi|227873069|ref|ZP_03991363.1| DNA-(apurinic or apyrimidinic site) lyase [Oribacterium sinus
F0268]
gi|227841050|gb|EEJ51386.1| DNA-(apurinic or apyrimidinic site) lyase [Oribacterium sinus
F0268]
Length = 250
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A ++KE+ E I G + A+ MK LV E+G +VP + +
Sbjct: 70 DLQAFVDCDLKELEEDIHSTGFYHNKAKNMKACAKALVEEYGG-------EVP--RNIEA 120
Query: 493 LLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L + G+G K+ + L ++H+ + VDT+V RI+ RLG + P P ++ L+E P
Sbjct: 121 LTGLPGVGRKTGNLI-LGNIYHIPSIVVDTHVKRISNRLG-LADSPDPTKVEFQLMEHLP 178
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ W R + +I G+ CT P C C ++ C
Sbjct: 179 ------EEFWIRW-----------NTHIIALGRTLCTSQNPKCGECYLQDLC 213
>gi|401827350|ref|XP_003887767.1| endonuclease III [Encephalitozoon hellem ATCC 50504]
gi|392998774|gb|AFM98786.1| endonuclease III [Encephalitozoon hellem ATCC 50504]
Length = 238
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 39/182 (21%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
D + L E + ++ + I+E IK G +N AE +K + ++++ G P
Sbjct: 86 DTHNGLTIENVINSSAEHINECIKRVGFHNRKAENLKK-IAEILKKKG----------LP 134
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPES 541
+ +D L S+ G+G K + +L ++H + VDT+V RI+ R+G V + + ES
Sbjct: 135 ENMED-LTSLPGVGNK----MAILYMNHACNKVVGISVDTHVHRISNRIGLVKTKDV-ES 188
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
+ L ++ P +R ++ L+ +G+ C +P C C +RG
Sbjct: 189 TRKELEKIVP-----------------KREWGSINRTLVGYGQTICVAKRPRCKECCIRG 231
Query: 602 EC 603
EC
Sbjct: 232 EC 233
>gi|296004674|ref|XP_966134.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
gi|225631743|emb|CAG25386.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
Length = 437
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 354 DDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRK 413
D+ V K+ D K +E +L+ +K+ + I+ K D + D + R
Sbjct: 186 DEKGVDKKIIDEKNVEFKRAHFLLTYNKLKEMRKDIIAPVDKYGCDKLSEKTNDMKVFRF 245
Query: 414 EVQRNSGKQERSRDR-----MDSLDYEALRCANV-----KEISEAIKERGMNNMLAERMK 463
+ + R++D MD L L N+ +++ + I G N+ A+++
Sbjct: 246 QTLISCMLSSRTKDEVTAMVMDKLKKHGLTVHNILNTTEEQLKKLIYGIGFYNVKAKQIL 305
Query: 464 DFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLH-HLAFPVDTN 522
+ L ++ S D+P + L + G+G K + + L+ H VD +
Sbjct: 306 QICHILKNKYNS-------DIPH--TYEELKKLPGIGEKIAQLILQTALNKHEGIAVDIH 356
Query: 523 VGRIAVRLGWVPLQ-PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
V RIA RL WV + L ++L +QK LW E+++ L+
Sbjct: 357 VHRIANRLNWVNSKNELDTQMKLK--------SYVQKELWS-----------EINHVLVG 397
Query: 582 FGKVFCTKSKPNCNACPMRGECRHF 606
FG+V C KP C C + +C+++
Sbjct: 398 FGQVICKGKKPLCEKCTLTNKCQYY 422
>gi|225390500|ref|ZP_03760224.1| hypothetical protein CLOSTASPAR_04255 [Clostridium asparagiforme
DSM 15981]
gi|225043429|gb|EEG53675.1| hypothetical protein CLOSTASPAR_04255 [Clostridium asparagiforme
DSM 15981]
Length = 293
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREH--GSIDLEWLRDVPPDKAKDYLLSIRGLG 500
KE++ A E ++ L R K +++RL ++ G +DL+ L + +A +YL G+G
Sbjct: 153 KELARASLEELLDLKLGYRAK-YIHRLSQDAAAGILDLKNLETMEYGQAMEYLTGFYGIG 211
Query: 501 LKSVECVRLLTLHHL-AFPVDTNVGRIAVR 529
K CV L LHH+ AFPVDT + +I +R
Sbjct: 212 KKVANCVCLFGLHHIEAFPVDTWIEKILLR 241
>gi|383757390|ref|YP_005436375.1| endonuclease III Nth [Rubrivivax gelatinosus IL144]
gi|381378059|dbj|BAL94876.1| endonuclease III Nth [Rubrivivax gelatinosus IL144]
Length = 214
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+++++E I+ G+ A+ + LV +HG VP ++++ L ++ G+G
Sbjct: 69 LEQVTELIRTIGLFRTKAKNLVQTCRILVEQHGGA-------VP--RSREALEALPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + VDT++ R+A R G P + P +++L LLE P ++ + W
Sbjct: 120 KTANVVLNVAFGEPTMAVDTHIFRVANRTGLAPGKN-PLAVELKLLERVPAKYAVDAHHW 178
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
LI G+ C +P C C +R C AS +
Sbjct: 179 -----------------LILHGRYVCQARRPQCERCAVRRWCDTAASTMPA 212
>gi|78048308|ref|YP_364483.1| A/G-specific adenine glycosylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036738|emb|CAJ24431.1| A/G-specific adenine glycosylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 357
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLARF--------------HGIAGY 161
Query: 551 PVLESIQKYLW----PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT+ KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLATSHVAHVPAGRLADYTQAQMDFGATLCTRGKPACVLCPLQADCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RDGLVE---ALPTPKPGK-------QLPEREATALL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + D YE DE+P I + ++LQ K+ L+
Sbjct: 268 ALWTLPQADTHSGMRAWFAAHIDGNYERADEMPLIVHTFSHYRLHLQPLRLRKVALR 324
>gi|408388582|gb|EKJ68263.1| hypothetical protein FPSE_11566 [Fusarium pseudograminearum CS3096]
Length = 486
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 39/155 (25%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREH----------------- 473
S+D+ +R A + I E+IK G++ + + +K L + E+
Sbjct: 261 SVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKTILELVYEENTKRREAFLEEKSGGKAT 320
Query: 474 ----------GSIDLEWLR------------DVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
G DLE L+ + PD+A L G+G+K+ CV L
Sbjct: 321 GLTGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFC 380
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
L +F VDT+V RI+ L W+P + + HL
Sbjct: 381 LQQPSFAVDTHVHRISGWLKWMPPKATRDQTFSHL 415
>gi|398848557|ref|ZP_10605368.1| endonuclease III [Pseudomonas sp. GM84]
gi|398248014|gb|EJN33443.1| endonuclease III [Pseudomonas sp. GM84]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +SE IK G+ N A+ + + L+ HG +VP + ++ L
Sbjct: 62 QAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGG-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V A VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKTVLE-VEKKLLKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|295703517|ref|YP_003596592.1| endonuclease III [Bacillus megaterium DSM 319]
gi|294801176|gb|ADF38242.1| endonuclease III [Bacillus megaterium DSM 319]
Length = 223
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIRSIGLYRNKAKNIQKLCRMLIDEYGG-------EVPTDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V + + VDT+V R++ RLG + V
Sbjct: 112 LTNLPGVGRKTANVVVSVAFGVPSIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D+ ++ H++LI FG+ C P C+ CP+ CR
Sbjct: 159 LE-VEKTLMRKIPK-DEWSVT--HHRLIFFGRYHCKAQSPQCHVCPLLDLCR 206
>gi|402846670|ref|ZP_10894979.1| endonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267362|gb|EJU16757.1| endonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 220
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E + A V +I E ++ A + RLV ++ +VP ++ + L+
Sbjct: 63 EIMARAEVDDIFELVRSVSYPRAKAGYLVAMAQRLVADYQG-------EVPEEREE--LM 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ G+G K+ + + + VDT+V R++ R+G P +L L++ P
Sbjct: 114 KLPGVGRKTANVIASVIYNRPTMAVDTHVFRVSNRIGLTTNSKTPLETELTLIKYIP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
++L P+ H+ LI G+ CT KP C C + CR+FA+
Sbjct: 171 ---EHLIPKA-----------HHWLILHGRYVCTARKPQCMTCGLAPYCRYFAA 210
>gi|379023259|ref|YP_005299920.1| endonuclease III [Rickettsia canadensis str. CA410]
gi|376324197|gb|AFB21438.1| endonuclease III [Rickettsia canadensis str. CA410]
Length = 209
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ + IK G+ N+ + + L+ E+ + P+ K+ L+ + G+G K+
Sbjct: 72 LKKYIKSIGLFNIKGKNIIALCKILINEYD--------NTVPNSFKE-LVKLPGVGRKTA 122
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V VDT+V R+A R+G + PE ++ LL++
Sbjct: 123 NVVLNCLFGMPTMAVDTHVFRVAKRIG-LAQGSTPEVVEKELLQI--------------- 166
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
L+++ L H+ LI G+ C KP+C+ CP++ C ++ +A
Sbjct: 167 --LNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKYCEYYLNA 209
>gi|404496830|ref|YP_006720936.1| endonuclease III-like DNA glycosidase [Geobacter metallireducens
GS-15]
gi|418065220|ref|ZP_12702594.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
gi|78194435|gb|ABB32202.1| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter metallireducens GS-15]
gi|373562398|gb|EHP88609.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
Length = 218
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I +AI G A ++ D LV ++ VP D D LL+ RG+G K+
Sbjct: 78 IEQAIYPVGFYRNKAAQILDICRTLVDKYDG-------QVPDDL--DELLTFRGVGRKTA 128
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V L LA VDT+V RI R G+ + P + L P QKY WP
Sbjct: 129 NLVLTLGFGKLAICVDTHVHRICNRWGYTSTKT-PAETEFALRAKLP-----QKY-WP-- 179
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
++ L+TFG+ CT P C+ C + C
Sbjct: 180 ---------VINDYLVTFGQNQCTPVSPRCSTCVLVCFC 209
>gi|220931920|ref|YP_002508828.1| endonuclease III [Halothermothrix orenii H 168]
gi|219993230|gb|ACL69833.1| endonuclease III [Halothermothrix orenii H 168]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + I G+ ++ + + N L++E+G VP + + LL + G+G K
Sbjct: 71 KTLEREINSIGLYRNKSKYIIEVSNILIKEYGG-------KVPGTRKE--LLKLPGVGRK 121
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V + FPVDT+V RI+ RLG V + E+ + L+E+ P
Sbjct: 122 TANVVLACAFNKKTFPVDTHVFRISNRLGLVSAKRTNEA-EKQLMEVIP----------- 169
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+ ++H+ LI G+ C P C+ C ++ C ++
Sbjct: 170 ------EEKWVDMHHWLIFHGREVCKARNPACHFCELKPFCNYY 207
>gi|386758812|ref|YP_006232028.1| endonuclease III [Bacillus sp. JS]
gi|384932094|gb|AFI28772.1| endonuclease III [Bacillus sp. JS]
Length = 219
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ ++ E+G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEEYGG-------EVPRDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE ++K L
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C P C CP+ CR
Sbjct: 167 RKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|294626163|ref|ZP_06704769.1| A/G-specific adenine glycosylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599515|gb|EFF43646.1| A/G-specific adenine glycosylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 357
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D+NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDSNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLW----PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLATTHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATALL----LHNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + D YE DE+P I + ++LQ K+ L+
Sbjct: 268 SLWTLPQADTESGMRAWFGAHIDGNYERADEMPPIVHTFSHYRLHLQPLRLRKVALR 324
>gi|422336392|ref|ZP_16417365.1| endonuclease III [Aggregatibacter aphrophilus F0387]
gi|353346578|gb|EHB90863.1| endonuclease III [Aggregatibacter aphrophilus F0387]
Length = 211
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V + E IK G+ N AE + L+ +H +VP D+A L
Sbjct: 62 QAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------EVPEDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R+ R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 162 KLIKVV-PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 205
>gi|296333028|ref|ZP_06875485.1| endonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674868|ref|YP_003866540.1| endonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
gi|350266406|ref|YP_004877713.1| endonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|296149879|gb|EFG90771.1| endonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413112|gb|ADM38231.1| endonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
gi|349599293|gb|AEP87081.1| endonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 219
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ ++G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|339442257|ref|YP_004708262.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
gi|338901658|dbj|BAK47160.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
Length = 214
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 27/165 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A+V+E+ + I+ G A + + +L+ + G +VP A + L+S+ G+
Sbjct: 69 ADVEEMEQDIRSIGFYRNKARNIINCARKLISDFGG-------EVPS--ALEDLISLPGV 119
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + VDT+V RI+ RLG+ Q PE ++ L++ P K
Sbjct: 120 GRKTANVIRGNIYKDPSIVVDTHVKRISNRLGFTKEQD-PEKIEYDLMKKLP------KD 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
W + Q+IT G+ CT P C C + C+
Sbjct: 173 HW-----------ISYNMQIITLGRTICTARSPKCGECFLSDLCK 206
>gi|269129033|ref|YP_003302403.1| endonuclease III [Thermomonospora curvata DSM 43183]
gi|268313991|gb|ACZ00366.1| endonuclease III [Thermomonospora curvata DSM 43183]
Length = 246
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A A+ +E+ + I+ G A+ + +L HG PD+ +D
Sbjct: 83 DYAA---ADREELEKIIRPTGFFRAKADNIIKLGQQLCERHGG--------QVPDRMED- 130
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+ GR+A R GW Q P ++ + EL P
Sbjct: 131 LVELAGVGRKTANVVLGNAFEVPGITVDTHFGRLARRFGWTS-QTDPVKVEREVAELIPR 189
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA--- 609
E W L +++I G+ C +P C CP+ C F
Sbjct: 190 KE------WTILS-----------HRMIWHGRRICHARRPACGVCPLARLCPSFGEGPTD 232
Query: 610 -FASARLALPGP 620
A+A+L GP
Sbjct: 233 PEAAAKLVRTGP 244
>gi|167035313|ref|YP_001670544.1| endonuclease III [Pseudomonas putida GB-1]
gi|166861801|gb|ABZ00209.1| endonuclease III [Pseudomonas putida GB-1]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ HGS +VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIYRVSNRTGIAPGKTVLE-VEKKLVKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|386772508|ref|ZP_10094886.1| endonuclease III [Brachybacterium paraconglomeratum LC44]
Length = 231
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 20/159 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
++E ++ GM A R+ L+ +H +VP D+A L + G+G K+
Sbjct: 86 VTEQVRPLGMGATRARRIIGLSRALLVDHDG-------EVPDDQAA--LERLPGVGRKTA 136
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
VR H VDT+VGR++ RLGW P +++ E + +
Sbjct: 137 HVVRGAWFGHSLLAVDTHVGRLSRRLGWTTATD-PRAVE----------EDVVARVEADG 185
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D L L +LI G+ CT P C C + C
Sbjct: 186 TGADAEDLTMLGLRLILHGRRVCTARAPRCGECVLADLC 224
>gi|334129620|ref|ZP_08503424.1| Endonuclease III [Methyloversatilis universalis FAM5]
gi|333445305|gb|EGK73247.1| Endonuclease III [Methyloversatilis universalis FAM5]
Length = 219
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + + IK G+ A+ + ++L+ +HG +VP D+A L
Sbjct: 69 EAIVSLGVAGVEDYIKTIGLFRAKAKNVVALSHQLLEKHGG-------EVPNDRAA--LE 119
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V + VDT++ RIA R+G P + + +++ LL++ P
Sbjct: 120 ALPGVGRKTANVVLNIVFGEPTMAVDTHIFRIANRIGLAPGKDV-LAVEHALLKVVP--- 175
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ + H+ LI G+ CT KP C C + CR+
Sbjct: 176 --------------KAFMLHAHHWLILHGRYVCTARKPLCERCSIVDICRY 212
>gi|398311183|ref|ZP_10514657.1| endonuclease III [Bacillus mojavensis RO-H-1]
Length = 219
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
+++E+ + IK G+ A+ ++ ++ ++G +VP D+ D L+ + G+
Sbjct: 68 VSLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPKDR--DELVKLPGV 118
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 165 LMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|416014967|ref|ZP_11562684.1| endonuclease III [Pseudomonas syringae pv. glycinea str. B076]
gi|320325635|gb|EFW81697.1| endonuclease III [Pseudomonas syringae pv. glycinea str. B076]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +SE IK G+ N A+ + + LV H S +VP + ++ L
Sbjct: 62 QAIYDLGVEGLSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V +A VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ C KP C +C + C
Sbjct: 169 --------------ENYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|302654297|ref|XP_003018956.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
gi|291182646|gb|EFE38311.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 80/215 (37%), Gaps = 50/215 (23%)
Query: 411 LRKEVQRNSGKQERSRDRMDSLDYEALRCAN--------VKEISEAIKE--RGMNNMLAE 460
L+K + + S + R+ YEA++C +K+I E + E + + L E
Sbjct: 230 LKKGIGKGSVDWNKVREAPVEDIYEAMKCGGLGVAKSKYIKQILEMVYEENKARRDALVE 289
Query: 461 RMKDFLNRLVREHGSID-------------------LEWLRDVPPDKAKDYLLSIRGLGL 501
L R GSI+ L L + D+A + G+G+
Sbjct: 290 SKTGREIDLTRAPGSINETEEQKDNEIAMANENVLSLNHLHSLSKDEAMLEFVKYPGIGV 349
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ CV L L F VDT++ R++ LGW+P + E LE+
Sbjct: 350 KTAACVVLFCLQRPCFAVDTHIFRLSKWLGWIPSDKVNEITAFSHLEV------------ 397
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
K+ Y LH I GK C P C A
Sbjct: 398 ----KIPDHLKYSLHQLFIRHGKA-C----PRCRA 423
>gi|408906624|emb|CCM12186.1| Endonuclease III [Helicobacter heilmannii ASB1.4]
Length = 208
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
+L AN+ E+ E IK N A+ + N++V+ +P +A+ L S
Sbjct: 60 SLANANLPEVQECIKSISYPNAKAKHLITMANQVVQNFQG-------QIPQTQAE--LKS 110
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G KS V + VDT+V R+A RLG L E
Sbjct: 111 LAGIGQKSANVVMSVAFGANLLAVDTHVFRVAHRLG---------------LSTAKSAEQ 155
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+K L L L LH+ LI FG+ C +P C++C ++ CR A+
Sbjct: 156 TEK----DLSALFVHDLSALHHALILFGRRICMALRPKCHSCFLQDFCRSRAN 204
>gi|357051748|ref|ZP_09112914.1| endonuclease III, partial [Enterococcus saccharolyticus 30_1]
gi|355379183|gb|EHG26349.1| endonuclease III, partial [Enterococcus saccharolyticus 30_1]
Length = 216
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI E I+ G+ A+ +K ++L+ VP + ++ L+
Sbjct: 63 EALAAAPVEEIIEKIRTIGLYRNKAKNIKACASQLIERFNG-------QVP--RTREELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL- 553
S+ G+G K+ V A VDT+V R+ RL L ++LE+ L
Sbjct: 114 SLPGVGRKTANVVLGDAFGIPAIAVDTHVERVTKRLRIC-------RLDANVLEVEQTLM 166
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ + + LW + H+ LI FG+ CT P C CP+ C+
Sbjct: 167 KKVPEDLWVKT-----------HHTLIFFGRYHCTARAPKCEVCPLLTMCQ 206
>gi|251792846|ref|YP_003007572.1| endonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|247534239|gb|ACS97485.1| endonuclease III [Aggregatibacter aphrophilus NJ8700]
Length = 213
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V + E IK G+ N AE + L+ +H +VP D+A L
Sbjct: 62 QAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------EVPEDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R+ R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 162 KLIKVV-PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 205
>gi|67479287|ref|XP_655025.1| endonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|56472130|gb|EAL49639.1| endonuclease III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707262|gb|EMD46954.1| endonuclease III, putative [Entamoeba histolytica KU27]
Length = 241
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
++ + + L + + +++ + IK G A+R+K + ++ +
Sbjct: 80 KKLHETLGELSVDVINNTSLEVLINCIKGVGFYTTKAKRLKHCCVIMKEQYNN------- 132
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPES 541
VP + K LL++ G+G K + + L + +DT+V I+ RLGW PE
Sbjct: 133 QVP--QTKQQLLTLPGVGPKIASLILSIGFDRLESLAIDTHVFVISQRLGWAD-GSTPEK 189
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
++L L P E WP K L+ FG+ C K+ P C CP++
Sbjct: 190 VRLQLESWLPKEE------WPLFNK-----------SLVAFGQCCCRKTHPKCKQCPIQD 232
Query: 602 ECRHF 606
+C+++
Sbjct: 233 KCQYY 237
>gi|294787263|ref|ZP_06752516.1| endonuclease III [Parascardovia denticolens F0305]
gi|294484619|gb|EFG32254.1| endonuclease III [Parascardovia denticolens F0305]
Length = 244
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
AL AN E++E I G A+ N L+ G +VP + + L +
Sbjct: 92 ALSQANPSEVAEIINSIGFFRTKAQHAVMIANDLITRFGG-------EVP--RTMEELTT 142
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ + FPVDT+V R+ RL W + + PV +
Sbjct: 143 LPGVGRKTANVILGNAFDLPGFPVDTHVMRVTKRLHW--------RSDWNKTKDDPV--A 192
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
I+K + + R +L ++LI FG+ C KP C CP+R C F
Sbjct: 193 IEKEVTAAFEPTEWR---DLSHRLIDFGRDTCHARKPECLICPLRDTCPSFG 241
>gi|257486632|ref|ZP_05640673.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422680768|ref|ZP_16739039.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331010113|gb|EGH90169.1| endonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 212
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +SE IK G+ N A+ + + LV H S +VP + ++ L
Sbjct: 62 QAMYDLGVEGLSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V +A VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ C KP C +C + C
Sbjct: 169 --------------KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|225419859|ref|ZP_03762162.1| hypothetical protein CLOSTASPAR_06200 [Clostridium asparagiforme
DSM 15981]
gi|225041483|gb|EEG51729.1| hypothetical protein CLOSTASPAR_06200 [Clostridium asparagiforme
DSM 15981]
Length = 219
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + I G +M A+ + LV +HGS +VP + + L ++ G+
Sbjct: 76 ADLKELEQDIHSTGFYHMKAKNIIACCRDLVDKHGS-------EVP--RTIEELTALAGV 126
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + + VDT+V RI+ +LG + P ++ L++ P
Sbjct: 127 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKSED-PVKIEQDLMKALP-------- 177
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
D L+ +H +IT G+ C +P C C +R C
Sbjct: 178 -------RDHWILWNIH--IITLGRSICIARRPKCGECFLREFC 212
>gi|443634847|ref|ZP_21119019.1| endonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443345272|gb|ELS59337.1| endonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 219
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + IK G+ A+ ++ ++ ++G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V + A VDT+V R++ RLG + V
Sbjct: 112 LVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D H++LI FG+ C P C CP+ CR
Sbjct: 159 LE-VEKTLMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>gi|380490652|emb|CCF35867.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 143
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
HG DL+ L + ++A ++S GLG K C+ + L AF VDT++ RI GW
Sbjct: 11 HGKWDLQHLFNASDEEAVKEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHIYRITGLWGW 70
Query: 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
P E Q HL P Y LHYQ I G+
Sbjct: 71 RPKDASKELAQAHLDARIP-----------------NEIKYALHYQFIVHGR-------- 105
Query: 593 NCNACPMRGECRHFASAFASARLALPGPEEKS 624
C AC G+ + A ++AL E+KS
Sbjct: 106 QCPACRGNGDSK----ARCEYKVALKEVEKKS 133
>gi|417644265|ref|ZP_12294273.1| endonuclease III [Staphylococcus warneri VCU121]
gi|445059639|ref|YP_007385043.1| endonuclease III [Staphylococcus warneri SG1]
gi|330685004|gb|EGG96679.1| endonuclease III [Staphylococcus epidermidis VCU121]
gi|443425696|gb|AGC90599.1| endonuclease III [Staphylococcus warneri SG1]
Length = 219
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V + + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFNEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K W + H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 171 -----KERWNKS-----------HHQLIFFGRYHCLARKPKCDICPLFNDCR 206
>gi|160902834|ref|YP_001568415.1| endonuclease III [Petrotoga mobilis SJ95]
gi|160360478|gb|ABX32092.1| endonuclease III [Petrotoga mobilis SJ95]
Length = 210
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 29/164 (17%)
Query: 441 NVKEISEAIKERGMNNMLAERMKDFLNRLVREH-GSIDLEWLRDVPPDKAKDYLLSIRGL 499
N +++ + IK GM +ER+ + L+ ++ G + PD+ ++ L+ + G+
Sbjct: 64 NPQDLYDLIKPAGMYKQKSERIINISKILIEKYNGKV---------PDELEE-LIELPGV 113
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V ++ A VDT+V RI+ RLGWV + PE + L ++ P
Sbjct: 114 GRKTANIVLYVSFGKEALAVDTHVHRISNRLGWVKTK-TPEETEEQLKKIIP------SE 166
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LW L+ ++ FG+ C P C+ C + C
Sbjct: 167 LWG-----------PLNGSMVNFGQKICKPISPKCDECFLNEVC 199
>gi|94498908|ref|ZP_01305446.1| endonuclease III [Bermanella marisrubri]
gi|94428540|gb|EAT13512.1| endonuclease III [Oceanobacter sp. RED65]
Length = 211
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ E IK G+ N A+ + L+ +H S VP + +D L+++ G+G K+
Sbjct: 72 LKEYIKTIGLFNSKAKNVVAMCKILMEKHNS-------QVP--ETRDELVALPGVGRKTA 122
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V + +A VDT++ R++ R P + + E ++ L+ L P
Sbjct: 123 NVVLNTAFNQIAMAVDTHIFRVSNRTKIAPGKDVLE-VEKRLIRLVP------------- 168
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ CT KP C +C + C
Sbjct: 169 ----KEFLMDAHHWLILHGRYVCTARKPKCGSCTIEDLC 203
>gi|157804115|ref|YP_001492664.1| endonuclease III [Rickettsia canadensis str. McKiel]
gi|157785378|gb|ABV73879.1| Endonuclease III [Rickettsia canadensis str. McKiel]
Length = 209
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P+ K+ L+ + G+G K+ V VDT+V R+A R+G + PE ++
Sbjct: 105 PNSFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG-LAQGSTPEVVEKE 162
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
LL++ L+++ L H+ LI G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------LNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKYCEY 205
Query: 606 FASA 609
+ +A
Sbjct: 206 YLNA 209
>gi|366088586|ref|ZP_09455059.1| endonuclease III [Lactobacillus acidipiscis KCTC 13900]
Length = 217
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
E L A+VKE+ + IK G+ A+ + L+ + S VP + L
Sbjct: 63 EDLAVADVKEVEQYIKNIGLYKNKAKYLVACSRSLMENYHS-------QVP--QTMKELT 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
S+ G+G K+ + V + VDT+V RI RL V + P ++ L++ P
Sbjct: 114 SLAGVGRKTADVVLADCFNIPTIAVDTHVARICKRLRIVSQKDTPAQIEQILMKKLP--- 170
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ +W R H+ LI +G+ C KP C CP+ C+
Sbjct: 171 ---RSMWIRA-----------HHTLIFWGRYRCQARKPLCETCPLFSVCQ 206
>gi|398944702|ref|ZP_10671410.1| endonuclease III [Pseudomonas sp. GM41(2012)]
gi|398157884|gb|EJM46253.1| endonuclease III [Pseudomonas sp. GM41(2012)]
Length = 212
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + L+ HG +VP + ++ L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLMERHGG-------EVP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 -KEYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|302384786|ref|YP_003820608.1| endonuclease III [Clostridium saccharolyticum WM1]
gi|302195414|gb|ADL02985.1| endonuclease III [Clostridium saccharolyticum WM1]
Length = 225
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + I G +M A+ + LV ++G +VP + + L S+ G+
Sbjct: 76 ADLKELEKDIHSLGFYHMKAKNIISCCQDLVEKYGG-------EVP--RTMEELTSLAGV 126
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + + VDT+V RI+ +LG+ + PE ++ L+++ P I
Sbjct: 127 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGFAREED-PEKIEFELMKVLPKDHWI--- 182
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LW + Q+IT G+ C P C C ++ C
Sbjct: 183 LW--------------NIQIITLGRSICVARNPKCCQCFLQTLC 212
>gi|294498166|ref|YP_003561866.1| endonuclease III [Bacillus megaterium QM B1551]
gi|294348103|gb|ADE68432.1| endonuclease III [Bacillus megaterium QM B1551]
Length = 223
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIRSIGLYRNKAKNIQKLCRMLIDEYGG-------EVPTDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V + + VDT+V R++ RLG + V
Sbjct: 112 LTNLPGVGRKTANVVVSVAFGVPSIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D+ ++ H++LI FG+ C P C+ CP+ CR
Sbjct: 159 LE-VEKTLMRKVPK-DEWSVT--HHRLIFFGRYHCKAQSPQCHVCPLLDLCR 206
>gi|71735109|ref|YP_273633.1| endonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|289626585|ref|ZP_06459539.1| endonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289647569|ref|ZP_06478912.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
gi|416028815|ref|ZP_11571704.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|422404345|ref|ZP_16481398.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|422582407|ref|ZP_16657543.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422594538|ref|ZP_16668828.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
gi|71555662|gb|AAZ34873.1| endonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298156815|gb|EFH97906.1| Endonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|320327082|gb|EFW83096.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330867250|gb|EGH01959.1| endonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330876898|gb|EGH11047.1| endonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330984845|gb|EGH82948.1| endonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 212
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V+ +SE IK G+ N A+ + + LV H S +VP + ++ L
Sbjct: 62 QAIYDLGVEGLSEYIKTIGLYNSKAKNVIETCRMLVELHNS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V +A VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ L + H+ LI G+ C KP C +C + C
Sbjct: 169 --------------KNYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|383453350|ref|YP_005367339.1| endonuclease III [Corallococcus coralloides DSM 2259]
gi|380733643|gb|AFE09645.1| endonuclease III [Corallococcus coralloides DSM 2259]
Length = 236
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A ++ I+ G+ A+ + LV EHG VP +D
Sbjct: 82 DAQAYARVEPTDVEPFIRTCGLYRAKAKNIVATARALVAEHGG-------QVP--LTRDT 132
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+GLK+ V + AFPVDT+V R+A RLG+ P + P+ ++ L L P
Sbjct: 133 LAQLPGVGLKTAGVVCIHLGGDAAFPVDTHVKRLAYRLGFTPHED-PDKVEKDLQALLP- 190
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITF-GKVFCTKSKPNCNACPMRGEC 603
R + L +QL+ + G+ C P+C +C + C
Sbjct: 191 -----------------RERWTLGHQLLVWHGRRTCFARSPDCGSCVVADRC 225
>gi|327311608|ref|YP_004338505.1| iron-sulfur cluster loop containing protein [Thermoproteus
uzoniensis 768-20]
gi|326948087|gb|AEA13193.1| iron-sulfur cluster loop containing protein [Thermoproteus
uzoniensis 768-20]
Length = 294
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 447 EAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS--IRGLGLKSV 504
+A++ G ++ + + + + RL R D P K LL+ + G GL
Sbjct: 128 KALRAGGFEALIPDAVSEMVERLRRIRAYED--------PVGKKALLLAKFLDGRGL--- 176
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGW--VPLQPLPESLQLHLLELYPVLESIQKYLWP 562
V+ + PVD ++ RIA RLG V + L E L+L E V + + K W
Sbjct: 177 --VKFKDPENFDVPVDNHLSRIAYRLGIADVDYRQLFEGLELSREEDAEVRQKV-KLAWR 233
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ K + L L +FG+ CT+ P C CP R C+
Sbjct: 234 LVAKFSGVDPFTLDDFLWSFGRRVCTREAPKCGQCPFRSVCK 275
>gi|313888481|ref|ZP_07822148.1| endonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845510|gb|EFR32904.1| endonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 213
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 32/226 (14%)
Query: 382 VYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCAN 441
V +ET P+ + K+ E A + +V+ N +E + D+ + +
Sbjct: 16 VLEETYPDAKCELEHKSPFELLVATILSAQCTDVRVNKVTEEMFKKYNKPEDFANM---D 72
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVRE-HGSIDLEWLRDVPPDKAKDYLLSIRGLG 500
+K + +KE G+ A+ +K N ++ E +G + P+ KD L+ + G+G
Sbjct: 73 IKTLEGLVKECGLYRNKAKNIKASSNVILEEFNGKV---------PETIKD-LMKLPGVG 122
Query: 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 560
K+ V A VDT+V R++ R+G+V + ++ + LE+
Sbjct: 123 KKTANVVASTCFGVPAIAVDTHVFRVSNRIGFVSENNVEKTEK--------ALEN----- 169
Query: 561 WPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
K+D++ + H+ I G+ CT P C ACP++ CR++
Sbjct: 170 -----KIDRKRWTKAHHLFIFHGRRCCTARSPKCQACPIKDFCRYY 210
>gi|239636874|ref|ZP_04677873.1| endonuclease III [Staphylococcus warneri L37603]
gi|239597548|gb|EEQ80046.1| endonuclease III [Staphylococcus warneri L37603]
Length = 219
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V + + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFNEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
K W + H+QLI FG+ C KP C+ CP+ +CR
Sbjct: 171 -----KERWNKS-----------HHQLIFFGRYHCLARKPKCDICPLFNDCR 206
>gi|451947518|ref|YP_007468113.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
gi|451906866|gb|AGF78460.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
Length = 218
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
++++E I+ G N+ A R+K+ L +++ + +L + +++++ LL ++G+G +
Sbjct: 73 EQLAEYIRPSGYYNIKARRLKNLL-QMISDKYEGELTYFLKDSLEESRENLLKVKGVGPE 131
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ + + L F +DT R+ R V +LQ ++ P
Sbjct: 132 TADAILLYAAEKPVFVIDTYTHRVFSRHQLVEEDTDYFTLQQEFMDNLPE---------- 181
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
D E H ++ K FC K+KP C+ CP++
Sbjct: 182 -----DPVLFNEFHALIVAVAKEFCKKAKPRCSDCPLQ 214
>gi|381170921|ref|ZP_09880073.1| A/G-specific adenine glycosylase [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688644|emb|CCG36560.1| A/G-specific adenine glycosylase [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 357
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLWP----RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ C
Sbjct: 162 PGLPAIEKQLWQLAIIHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTNCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATALL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + + D YE DE+P I + ++LQ + K+ L+
Sbjct: 268 SLWTLPQAETESGMRAWFAAHIDGNYERADEMPPIVHAFSHYRLHLQPWRLRKVALR 324
>gi|405972859|gb|EKC37606.1| N-glycosylase/DNA lyase [Crassostrea gigas]
Length = 364
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNR----LVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
E+SE E + N+ ++N+ ++ + G L LR++P +AK LL++ G+
Sbjct: 189 ELSEDGVESELRNLGFGYRAKYINKSAQQILEKGGETWLRALREIPYAEAKKELLALNGV 248
Query: 500 GLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVP 534
G K +CV L++L A PVDT+V +IA R G++P
Sbjct: 249 GAKVADCVCLMSLDKTDALPVDTHVWQIAAR-GYMP 283
>gi|225848833|ref|YP_002728997.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644602|gb|ACN99652.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
Length = 208
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 29/186 (15%)
Query: 418 NSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID 477
N K ++ + + L +E + +++++ IK G N + +KD + +
Sbjct: 46 NVEKSIKNLIKENCLSFECIDKIDIEKLKNLIKPSGFYNQKSRTLKDLAKLFLSKK---- 101
Query: 478 LEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537
D ++ LLSI+G+G ++ E + L L F VD R+ RLG+
Sbjct: 102 ---------DIGREDLLSIKGIGQETAESILLYALDKPYFVVDNYTKRLFYRLGFT---- 148
Query: 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNAC 597
E++ +QK++ RL +D E H ++ K FC K KP C C
Sbjct: 149 -AENIS---------YSDLQKFITGRL-PVDLEIYKEFHALIVKHCKEFCQK-KPKCENC 196
Query: 598 PMRGEC 603
+ +C
Sbjct: 197 FLSHKC 202
>gi|333378080|ref|ZP_08469812.1| endonuclease III [Dysgonomonas mossii DSM 22836]
gi|332883585|gb|EGK03866.1| endonuclease III [Dysgonomonas mossii DSM 22836]
Length = 225
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PD ++ L SI G+G K+ + ++ + A PVDT+V R++ R+G P +
Sbjct: 119 PDTLEE-LESIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKKPAQTERE 177
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L++ P R L + H+ LI G+ C KP C C + C++
Sbjct: 178 LIKYIP-----------------SRYLSKAHHWLILHGRYVCLARKPKCEECGLTPFCKY 220
Query: 606 FAS 608
F +
Sbjct: 221 FTN 223
>gi|404494240|ref|YP_006718346.1| endonuclease III-like protein [Pelobacter carbinolicus DSM 2380]
gi|77546248|gb|ABA89810.1| endonuclease III-related protein [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+AL +++ E I+ G A+R++ F L+ +H DL+ + P + + LL
Sbjct: 77 QALCALQRQDLEELIRPAGFFRQKAQRLQLFATCLLEKHQG-DLDAMLSGPLSQVRQTLL 135
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
+ +G+G ++ + + L H +F VD R+ R G +LE E
Sbjct: 136 TFKGIGPETADSILLYAGHRPSFVVDAYTRRLFKRYG--------------VLEGDETYE 181
Query: 555 SIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
I+ L + Q L+ E H ++ K FC K +P C CP++ EC
Sbjct: 182 DIRALFMAHLPR--QVDLFNEYHALIVEQCKTFCRK-RPLCENCPLQPEC 228
>gi|240139469|ref|YP_002963944.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|418059134|ref|ZP_12697091.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
gi|240009441|gb|ACS40667.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|373567329|gb|EHP93301.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
Length = 254
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A+V+EI I + A R+K L + G++ L++L D+ ++A+ +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVNEARGW 145
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
L +I G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
VL + W + LY+ H L+ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|160880161|ref|YP_001559129.1| 8-oxoguanine DNA glycosylase [Clostridium phytofermentans ISDg]
gi|160428827|gb|ABX42390.1| 8-oxoguanine DNA glycosylase domain protein [Clostridium
phytofermentans ISDg]
Length = 272
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 526
GS DLE L ++ + AK L+ + G+G+K EC+ L LHH AFP+DT++ ++
Sbjct: 183 GSFDLEGLPNLSYEDAKKELMKLYGVGIKVSECICLYALHHFDAFPIDTHIQKV 236
>gi|378828254|ref|YP_005190986.1| endonuclease III [Sinorhizobium fredii HH103]
gi|365181306|emb|CCE98161.1| putative endonuclease III protein [Sinorhizobium fredii HH103]
Length = 275
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
++M +L E LR +AIK G+ A+ + RL+ + G VP
Sbjct: 109 EKMLALGEEKLR--------DAIKTIGLYRNKAKNVIALSERLIADFGGA-------VP- 152
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
K ++ L+++ G+G K+ V + VDT++ RIA R+ P + P+ ++ +L
Sbjct: 153 -KTREELMTLPGVGRKTANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGKT-PDEVEANL 210
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ + P QKYL Y H+ LI G+ C +P C C + C+
Sbjct: 211 MRVIP-----QKYL------------YHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|188582085|ref|YP_001925530.1| HhH-GPD family protein [Methylobacterium populi BJ001]
gi|179345583|gb|ACB80995.1| HhH-GPD family protein [Methylobacterium populi BJ001]
Length = 259
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D+ + A+V++I I+ + A R+K L + G++ L++L D+ D+A+ +
Sbjct: 86 DWAEIEQASVEDIEATIRSVTWPELKAPRIKAVLAAVRERVGALSLDFLGDMSVDEARGW 145
Query: 493 LLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGW----VPLQPLPESLQLHLL 547
L +I G+G K S + TL A PVD++ R+A R G V + P L+ L
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGSKVDVGPSHAVLRAQL- 204
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P S QK LY+ H L+ G+ C P C C + C
Sbjct: 205 ---PDDWSAQK-------------LYDNHEVLMLHGQRVCFHHSPACGRCVLLDIC 244
>gi|383479909|ref|YP_005388803.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|383493824|ref|YP_005411500.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
gi|378927899|gb|AFC66105.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|378929552|gb|AFC67969.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
Length = 218
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ E L A + ++ A++ G+ K+ +++ +I ++ VP K +
Sbjct: 62 EIEDLAFAELSDVENALRTIGL-------YKNKAKNIIKTAQAIRDDFKGQVP--KTHEE 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V A VDT+V R++ RL L + ++ L+
Sbjct: 113 LESLPGVGRKTANVVLAEVYGVPAIAVDTHVARVSKRLNISSLDADVKQIEADLM----- 167
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
K+ ++ H++LI FG+ C KP C CP++ C+++ + +
Sbjct: 168 ------------AKIPKKDWIITHHRLIFFGRYHCLAKKPKCEICPVQSYCKYYQNTYGK 215
Query: 613 AR 614
++
Sbjct: 216 SK 217
>gi|294667548|ref|ZP_06732763.1| A/G-specific adenine glycosylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292602668|gb|EFF46104.1| A/G-specific adenine glycosylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 357
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLTRF--------------HGIAGY 161
Query: 551 PVLESIQKYLW----PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLAITHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
+ ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RNGLVD---ALPTPKPGK-------QLPEREATALL----LHNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + + D YE DE+P I + ++LQ K+ L+
Sbjct: 268 SLWTLPQADTESGMRAWFAAHIDGNYERADEMPPIVHTFSHYRLHLQPLRLRKVALR 324
>gi|359300236|ref|ZP_09186075.1| endonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
Length = 211
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + LV +H S VP ++ + L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLVEKHHS-------QVPENR--EALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R+A R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVANRTGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C +C + C +
Sbjct: 162 KLNKVV-PSEFKVD------VHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>gi|334339915|ref|YP_004544895.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091269|gb|AEG59609.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 224
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
+++ IK G+ ++ + + LV ++G +VP D+ + L+ + G+G K+
Sbjct: 81 QLANDIKGCGLFRNKSKHLVETSRILVEQYGG-------EVPQDR--ESLMLLPGVGRKT 131
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + FPVDT+V R+A RLG + PE +L L L P + W R
Sbjct: 132 ANVVLGVVFGQATFPVDTHVHRLAHRLGLSSGKS-PEQTELDLCALIPPEQ------WQR 184
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
H+QLI G+ C KP C C + C
Sbjct: 185 -----------AHHQLIYHGRRVCDARKPKCPDCCVNDLC 213
>gi|449094729|ref|YP_007427220.1| endonuclease III [Bacillus subtilis XF-1]
gi|449028644|gb|AGE63883.1| endonuclease III [Bacillus subtilis XF-1]
Length = 203
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ ++ ++G +VP D+ D L+ + G+G
Sbjct: 54 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DELVKLPGVGR 104
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R+ RLG + VLE ++K L
Sbjct: 105 KTANVVVSVAFGVPAIAVDTHVERVTKRLGICRWKD-------------SVLE-VEKTLM 150
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C P C CP+ CR
Sbjct: 151 RKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 190
>gi|402305793|ref|ZP_10824852.1| endonuclease III [Haemophilus sputorum HK 2154]
gi|400376906|gb|EJP29793.1| endonuclease III [Haemophilus sputorum HK 2154]
Length = 211
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V + E IK G+ N AE + LV +H S VP ++ + L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLVEKHHS-------QVPENR--EALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R+A R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVANRTGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C +C + C +
Sbjct: 162 KLNKVV-PSEFKVD------VHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>gi|367042070|ref|XP_003651415.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
gi|346998677|gb|AEO65079.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
Length = 588
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN-----RLVREHGS---------- 475
S+++E +R ++ +E+ E IK G A +K L+ L R G
Sbjct: 365 SINWEKVRLSSHQELVEVIKIAGNGPKKARHIKQILDMVYEENLQRAQGQPSLTKANPIQ 424
Query: 476 ------------IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNV 523
+ L+ + + D+A +S G+G+K+ CV L L F VDT+V
Sbjct: 425 RGDGTCVATQNLLSLDHMHSMSKDEAMAKFVSYPGIGIKTAACVTLFCLRMPCFAVDTHV 484
Query: 524 GRIAVRLGWVPLQPLPESLQLHLLELYP 551
+ LGWVP + P++ H + P
Sbjct: 485 HKFCRWLGWVPAKADPDNCFRHGEVMVP 512
>gi|302921021|ref|XP_003053199.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
gi|256734139|gb|EEU47486.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
Length = 485
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 17/163 (10%)
Query: 399 DGEKKNAIDWESLRK-------EVQRNSG-KQERSRDRMDSLDYEALRCANVKEISEAIK 450
+G K ++DW +R E + G Q + +D L E + NVK I+
Sbjct: 255 EGIGKGSVDWNKVRTAPLTTIVEAIKTGGLAQVKGKDIKAIL--ELVHEENVKRRDAFIQ 312
Query: 451 ERGMNNMLAERMKDF-------LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
ER M D L L E + L+ + + PD+A L G+G+K+
Sbjct: 313 ERKSGKMSGAFKADGKTQGQKDLEILKTEQDILSLDHIHGMHPDEAMQTLTKFPGIGVKT 372
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
CV L L +F VDT+V R+ L W+P + + HL
Sbjct: 373 ASCVILFCLQQPSFAVDTHVHRLTGWLKWMPPKATRDQTFSHL 415
>gi|413944179|gb|AFW76828.1| hypothetical protein ZEAMMB73_573219 [Zea mays]
Length = 264
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
K + +AI+ G+ A R++ L + G I LE+LR++ D+ K L +G+G K
Sbjct: 180 KRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRFKGIGPK 239
Query: 503 SVECVRLLTLHHLAFPVDTN 522
+V CV + L FPVDT+
Sbjct: 240 TVACVLMFYLQKDDFPVDTH 259
>gi|395496886|ref|ZP_10428465.1| endonuclease III [Pseudomonas sp. PAMC 25886]
Length = 212
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + LV HGS +VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVELHGS-------EVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V L VDT++ R++ R G + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIARGKNVVE-VEKQLMKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 --KPYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|389685832|ref|ZP_10177155.1| endonuclease III [Pseudomonas chlororaphis O6]
gi|399005502|ref|ZP_10708082.1| endonuclease III [Pseudomonas sp. GM17]
gi|425901222|ref|ZP_18877813.1| endonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|388550174|gb|EIM13444.1| endonuclease III [Pseudomonas chlororaphis O6]
gi|397883764|gb|EJL00251.1| endonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398125990|gb|EJM15443.1| endonuclease III [Pseudomonas sp. GM17]
Length = 212
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV H S +VP + ++ L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHNS-------EVP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
++YL LD H+ LI G+ C KP C +C + C +
Sbjct: 169 -KEYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|338972439|ref|ZP_08627812.1| endonuclease III [Bradyrhizobiaceae bacterium SG-6C]
gi|338234224|gb|EGP09341.1| endonuclease III [Bradyrhizobiaceae bacterium SG-6C]
Length = 287
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 35/178 (19%)
Query: 427 DRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPP 486
++M +L E LR + IK G+ A+ + +L+ HGS +VP
Sbjct: 139 EKMVALGEEKLR--------DYIKTIGLYRTKAKNVIALSEQLIALHGS-------EVPR 183
Query: 487 DKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 546
D+A L ++ G+G K+ V + VDT++ R+ R G P + P +++L L
Sbjct: 184 DRAA--LEALPGVGRKTANVVLNIAFGEPTIAVDTHLFRVGNRTGLAPGKT-PLAVELGL 240
Query: 547 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE+ P PR + H+ LI G+ C KP C C + CR
Sbjct: 241 LEIVP----------PRFAR-------HAHHWLILHGRYTCVARKPRCEVCIINDLCR 281
>gi|163867394|ref|YP_001608588.1| endonuclease III [Bartonella tribocorum CIP 105476]
gi|161017035|emb|CAK00593.1| endonuclease III [Bartonella tribocorum CIP 105476]
Length = 253
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 32/177 (18%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI+ I+ G+ A + N L+ ++G PD + L+S+ G+G K+
Sbjct: 96 EIAHHIRSIGLWRAKARNVYALSNCLIDQYGG--------QVPDTC-EALMSLPGVGRKT 146
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ R++ RLG P + PE ++ LL++ PV
Sbjct: 147 ANVVLNVAFGQPTLAVDTHIFRLSNRLGLAPGKT-PEIVEKKLLKIIPV----------- 194
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGP 620
L H+ LI G+ C KP C C + C+ AS A+P P
Sbjct: 195 ------HYLRHAHHWLILHGRYICQARKPQCTQCIIADLCKA-----ASKTNAIPAP 240
>gi|146295729|ref|YP_001179500.1| HhH-GPD family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409305|gb|ABP66309.1| HhH-GPD family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 224
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+++ I+ G N A+R+KDF + L E S DL+ L + + ++ LLS +G+G ++
Sbjct: 75 LAQLIRPTGYYNQKAKRLKDFCSFLKNEFNS-DLQKLFSLEISELREKLLSQKGIGYETA 133
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP-ESLQLHLLELYPVLESIQKYLWPR 563
+ + L F VD R+ RLG + + + LQ ++E
Sbjct: 134 DSIILYGAEKPIFVVDAYTKRLFFRLGLIESEKIDYNQLQSTIME--------------- 178
Query: 564 LCKLDQRT--LYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L+ +T E H ++ K C KP C C + C
Sbjct: 179 --NLEHKTSLFNEFHALIVKHCKEICKNKKPECKKCCLHKMC 218
>gi|336476216|ref|YP_004615357.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
gi|335929597|gb|AEH60138.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
Length = 203
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A V EI E IK+ G + + R+K+ L+ +G +VP + + LL + G+
Sbjct: 63 AEVSEIEELIKDVGFYRVKSRRVKEIAEILMYRYGG-------EVPDNC--ELLLELPGV 113
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ CV L VDT+V RI+ RLG V E+ E K
Sbjct: 114 GRKTANCVLLYAFSKETIAVDTHVHRISNRLGLVKSSTPDET------------EEKLKK 161
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ PR D L+ + FG+ C P C+ C + C
Sbjct: 162 ILPRSSWKDINELF------VQFGQNICRPVSPKCDICVLCNIC 199
>gi|333396087|ref|ZP_08477904.1| endonuclease III [Lactobacillus coryniformis subsp. coryniformis
KCTC 3167]
Length = 216
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D D +A+ A+ + I G+ A+ MK L+ + + VP +A
Sbjct: 58 DFPDPQAMAAASETALQADIHSIGLYRNKAKHMKAASQALLDDFNGV-------VPSTRA 110
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ L+ + G+G K+ + V AF VDT+V R+ RL VP + ++ +++L
Sbjct: 111 E--LMQLPGVGRKTADVVLADAFGIPAFAVDTHVTRVTKRLRMVPQKATVLEIEQRMMKL 168
Query: 550 YPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
P + LW H+++I FG+ C P C CP+ C
Sbjct: 169 LP------EDLW-----------VTAHHRMIYFGRYHCLARAPKCEQCPLLSMC 205
>gi|390449495|ref|ZP_10235100.1| endonuclease III [Nitratireductor aquibiodomus RA22]
gi|389663992|gb|EIM75503.1| endonuclease III [Nitratireductor aquibiodomus RA22]
Length = 246
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 28/188 (14%)
Query: 418 NSGKQERSRDRMDSLDY-EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSI 476
++G + +RD D E + +++ E I+ G+ A+ + L+R+HGS
Sbjct: 67 DAGVNKATRDLFKVADTPEKMLALGEQKVGEYIRTIGLWRNKAKNVIALSEALIRDHGS- 125
Query: 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 536
VP +++ L+++ G+G K+ V ++ VDT++ RI R+G P +
Sbjct: 126 ------QVP--DSREALVTLPGVGRKTANVVLNMSFGQPTMAVDTHILRIGNRIGLAPGK 177
Query: 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNA 596
PE ++ L+++ P + H+ LI G+ C KP+C A
Sbjct: 178 T-PEQVEDTLVKIIPA-----------------EFMRHAHHWLILHGRYVCKARKPDCPA 219
Query: 597 CPMRGECR 604
C + C+
Sbjct: 220 CVIADICK 227
>gi|418562457|ref|ZP_13126914.1| endonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|371973561|gb|EHO90909.1| endonuclease III [Staphylococcus aureus subsp. aureus 21262]
Length = 219
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L S+ G+G K+ V + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ W R H+QLI FG+ C KP C+ CP+ ECR
Sbjct: 171 -----RDRWNR-----------SHHQLIFFGRYHCLARKPKCDICPLLEECR 206
>gi|146276253|ref|YP_001166412.1| endonuclease III [Rhodobacter sphaeroides ATCC 17025]
gi|145554494|gb|ABP69107.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides ATCC 17025]
Length = 214
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
L+RL+ +H + +VP +A L S+ G+G K+ V + H A VDT++ R
Sbjct: 96 LSRLLVDH------YDGEVPASRAA--LQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
+A R G P + + E+++ L + P ++ + W LI G+
Sbjct: 148 VANRTGIAPGRDV-EAVERALEDHVPAPFALHAHHW-----------------LILHGRY 189
Query: 586 FCTKSKPNCNACPMRGEC 603
C KP C CP+R C
Sbjct: 190 ICVARKPKCGICPIRDLC 207
>gi|157826170|ref|YP_001493890.1| endonuclease III [Rickettsia akari str. Hartford]
gi|157800128|gb|ABV75382.1| endonuclease III [Rickettsia akari str. Hartford]
Length = 228
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V+ VDT+V R+A R+G PE ++ LL++
Sbjct: 111 LVKLPGVGRKTANVVQNCLFGMPTMAVDTHVFRVAKRIGLAKGNS-PEIVEKELLQI--- 166
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+D + L H+ LI G+ C KP+C+ CP++ +C ++
Sbjct: 167 --------------IDGKWLTHAHHWLILHGRYICKARKPDCDICPIKDDCEYY 206
>gi|410090685|ref|ZP_11287273.1| endonuclease III [Pseudomonas viridiflava UASWS0038]
gi|409762058|gb|EKN47094.1| endonuclease III [Pseudomonas viridiflava UASWS0038]
Length = 212
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ H +VP + ++ L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLMERHNG-------EVP--ETREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V +A VDT++ R++ R G P + + E V +
Sbjct: 113 ALPGVGRKTANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVVE-----------VEK 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ K++ PR LD H+ LI G+ C KP C +C + C
Sbjct: 162 QLMKFV-PRGYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|393241149|gb|EJD48672.1| DNA glycosylase [Auricularia delicata TFB-10046 SS5]
Length = 253
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
R+ + L + + A+ IS AI + G E +K +L E S DVP
Sbjct: 76 REALGGLTVDNILAADDSVISGAIAKVGFWRRKTEYLKKAAQKLRDEFDS-------DVP 128
Query: 486 PDKAKDYLLSIRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGW-VPLQPLPESLQ 543
K D L S+ G+G K + C++ ++ VDT+V RI RLGW P PE +
Sbjct: 129 --KTVDELCSLPGVGPKMAFLCLQSAWKLNVGIGVDTHVHRITNRLGWHKPTTTTPEQTR 186
Query: 544 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
L+L P + Y++++ L+ FG+ C P C+ C + +
Sbjct: 187 LNLQSWLP-----------------KDLHYDVNHMLVGFGQTICLPVGPKCDVCELSAK 228
>gi|325925083|ref|ZP_08186503.1| A/G-specific DNA-adenine glycosylase [Xanthomonas perforans 91-118]
gi|346725423|ref|YP_004852092.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
citrumelo F1]
gi|325544499|gb|EGD15862.1| A/G-specific DNA-adenine glycosylase [Xanthomonas perforans 91-118]
gi|346650170|gb|AEO42794.1| A/G-specific adenine glycosylase [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 357
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 32/237 (13%)
Query: 491 DYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 550
D LL++ G+G + + + +D NV R+ R H + Y
Sbjct: 116 DALLALPGIGRSTAGAILSQAWNDRFAIMDGNVKRVLARF--------------HGIAGY 161
Query: 551 PVLESIQKYLW----PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
P L +I+K LW + + L + + FG CT++KP C CP++ +C
Sbjct: 162 PGLPAIEKQLWQLATSHVAHVPAGRLADYTQAQMDFGATLCTRAKPACVLCPLQTDCIAR 221
Query: 607 ASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCE 666
ALP P+ + ER + ++ L + E L + R G
Sbjct: 222 RDGLVE---ALPTPKPGK-------QLPEREATALL----LQNAEGHILLQRRPPTGIWA 267
Query: 667 PIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQ 723
+ P + D YE DE+P I + ++LQ K+ L+
Sbjct: 268 ALWTLPQADTHSGMRAWFAAHIDGNYERADEMPPIVHTFSHYRLHLQPLRLRKVALR 324
>gi|281423216|ref|ZP_06254129.1| endonuclease III [Prevotella oris F0302]
gi|281402552|gb|EFB33383.1| endonuclease III [Prevotella oris F0302]
Length = 229
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV-REHGSIDLEWLRDVPPDKAKDYL 493
EA+ A+ ++I + IK N A + + LV R +G + PD D L
Sbjct: 63 EAMAQADWEDIFQLIKSVSYPNSKAHHLSEMAKILVERFNGEV---------PDNTDD-L 112
Query: 494 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYPV 552
+ G+G K+ V+ + VDT+V R++ RLG VP P ++L L++ P
Sbjct: 113 TQLPGVGRKTANVVQAVWFGKPTLAVDTHVYRVSHRLGLVPETANTPLKVELELMKYIP- 171
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
K D + H+ L+ G+ C KP C CP C
Sbjct: 172 -------------KAD---VGNAHHWLLLHGRYICKSQKPQCQDCPFNTFC 206
>gi|256830633|ref|YP_003159361.1| HhH-GPD family protein [Desulfomicrobium baculatum DSM 4028]
gi|256579809|gb|ACU90945.1| HhH-GPD family protein [Desulfomicrobium baculatum DSM 4028]
Length = 232
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD AL +E++ I+ G + A R+++FL L R +D++ LR + +
Sbjct: 60 LDPRALARLTDEELATFIRPAGAFRVKAARVRNFLLFLHRT-CDLDMDGLRGETVETLRP 118
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL + G+G ++ + + L L +F VD RI R G VP L+ +++ P
Sbjct: 119 ALLEVSGIGPETADSILLYALGLPSFVVDAYTRRILNRHGLVPEDIAYGELREFFMDVLP 178
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611
D E H ++ GK +C K + C CP+ F+
Sbjct: 179 P---------------DPALYNEYHALIVRTGKNWCAKRQGKCPDCPLAVFLEEFSPLTC 223
Query: 612 SARLALPGP 620
+ + +P P
Sbjct: 224 TGKSIIPHP 232
>gi|337266339|ref|YP_004610394.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
gi|336026649|gb|AEH86300.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 266
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ + I+ G+ A+ + L+R+HG VP D+ D L+ + G+G K+
Sbjct: 109 KVGDHIRTIGLWRNKAKNVIALSEALIRDHGGA-------VPDDR--DELVKLPGVGRKT 159
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 160 ANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGKT-PEQVEHGLLKIIP------------ 206
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ H+ LI G+ C KP+C AC + C+
Sbjct: 207 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|384048003|ref|YP_005496020.1| endonuclease III-like protein [Bacillus megaterium WSH-002]
gi|345445694|gb|AEN90711.1| Endonuclease III-like protein [Bacillus megaterium WSH-002]
Length = 223
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 29/172 (16%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
DY A+ +++E+ + I+ G+ A+ ++ L+ E+G +VP D+ D
Sbjct: 64 DYLAV---SLEELQQDIRSIGLYRNKAKNIQKLCRMLIDEYGG-------EVPRDR--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L ++ G+G K+ V + + VDT+V R++ RLG + V
Sbjct: 112 LTNLPGVGRKTANVVVSVAFGVPSIAVDTHVERVSKRLGICRWKD-------------SV 158
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
LE ++K L ++ K D+ ++ H++LI FG+ C P C+ CP+ CR
Sbjct: 159 LE-VEKTLMRKIPK-DEWSVT--HHRLIFFGRYHCKAQSPQCHVCPLLDLCR 206
>gi|307352991|ref|YP_003894042.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156224|gb|ADN35604.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 215
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D AL A +++ IK+ G A+ + + L + G +VP + +
Sbjct: 63 DPAALSQAKQEDVETIIKKTGFFRAKAKNIIESSKILCSDFGG-------EVP--RTMEE 113
Query: 493 LLSIRGLGLKSVECVRLLTLHHL-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 547
L+++ G+G K+ V L+H VDT+V R++ R+G P +++ L
Sbjct: 114 LVTLPGVGRKTANIV----LNHAFGIDEGIAVDTHVKRVSWRIGLTD-NTDPVKIEMDLT 168
Query: 548 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
L+P K W ++ +Y LI+ G+ CT KP+C C ++ CR+F
Sbjct: 169 ALFP------KDAWGKM-----------NYLLISHGRAICTARKPDCERCVIKDFCRYF 210
>gi|323485385|ref|ZP_08090733.1| hypothetical protein HMPREF9474_02484 [Clostridium symbiosum
WAL-14163]
gi|323694147|ref|ZP_08108326.1| endonuclease III [Clostridium symbiosum WAL-14673]
gi|355625585|ref|ZP_09048320.1| endonuclease III [Clostridium sp. 7_3_54FAA]
gi|323401248|gb|EGA93598.1| hypothetical protein HMPREF9474_02484 [Clostridium symbiosum
WAL-14163]
gi|323501864|gb|EGB17747.1| endonuclease III [Clostridium symbiosum WAL-14673]
gi|354821278|gb|EHF05669.1| endonuclease III [Clostridium sp. 7_3_54FAA]
Length = 218
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + I G +M A+ + LV G +VP + + L S+ G+
Sbjct: 75 ADLKELEKDIHSTGFYHMKAKNIIACCKSLVENFGG-------EVP--RTLEELTSLAGV 125
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P I
Sbjct: 126 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYDLMKVLPKEHWI--- 181
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
LW + Q+IT G+ C P C C +R C
Sbjct: 182 LW--------------NIQIITLGRSICIARSPKCGECFLRENC 211
>gi|163785187|ref|ZP_02179872.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159879544|gb|EDP73363.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502
++I+E I G A+ +KD I LE PD + LL +G+G K
Sbjct: 76 EKIAELIYPAGFYKNKAKTIKDI--------SKIILEKYNGKVPDTLEK-LLKFKGVGRK 126
Query: 503 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562
+ V + A VD +V RI+ RLG+V + PE + L+E P +KY W
Sbjct: 127 TANLVLSEGFNKPAICVDIHVHRISNRLGFVKTKT-PEKTEFALMEKLP-----EKY-WN 179
Query: 563 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ KL L+ FG+ C P C+ CP+ C+
Sbjct: 180 KINKL-----------LVGFGQTICKPVSPYCSKCPVENLCK 210
>gi|342873258|gb|EGU75465.1| hypothetical protein FOXB_14013 [Fusarium oxysporum Fo5176]
Length = 552
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 41/144 (28%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE------------------ 472
S+D+ +R A + I E+IK G+ + + +K L LV E
Sbjct: 326 SVDWNKVRVAPLPTIVESIKTGGLAQVKGKDIKAILE-LVHEENTKRREAFMQEKKGGNL 384
Query: 473 ----------HGSIDLEWLR------------DVPPDKAKDYLLSIRGLGLKSVECVRLL 510
G DLE L+ + PD+A L G+G+K+ CV L
Sbjct: 385 SGITGADNKTQGQKDLEILKTEQDILSLDHIHGMAPDEAMQTLTKFPGIGVKTASCVILF 444
Query: 511 TLHHLAFPVDTNVGRIAVRLGWVP 534
L +F VDT+V RI+ L W+P
Sbjct: 445 CLQQPSFAVDTHVHRISGWLKWIP 468
>gi|125973798|ref|YP_001037708.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Clostridium thermocellum ATCC 27405]
gi|256004530|ref|ZP_05429509.1| endonuclease III [Clostridium thermocellum DSM 2360]
gi|385778329|ref|YP_005687494.1| endonuclease III [Clostridium thermocellum DSM 1313]
gi|419722223|ref|ZP_14249371.1| endonuclease III [Clostridium thermocellum AD2]
gi|419724321|ref|ZP_14251389.1| endonuclease III [Clostridium thermocellum YS]
gi|125714023|gb|ABN52515.1| endonuclease III [Clostridium thermocellum ATCC 27405]
gi|255991535|gb|EEU01638.1| endonuclease III [Clostridium thermocellum DSM 2360]
gi|316940009|gb|ADU74043.1| endonuclease III [Clostridium thermocellum DSM 1313]
gi|380772327|gb|EIC06179.1| endonuclease III [Clostridium thermocellum YS]
gi|380781794|gb|EIC11444.1| endonuclease III [Clostridium thermocellum AD2]
Length = 213
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A++KE+ + IK G + A+ +K+ +V + G PD +D LL++ G+
Sbjct: 69 ADLKELEQDIKPTGFYHNKAKNIKETCKIIVEKFGG--------KVPDNMED-LLTLPGV 119
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ + VDT+ R++ R+G V P+ ++ L+E+ P K
Sbjct: 120 GRKTANVILGDAFGIPGIVVDTHAKRLSNRIGLVNTDD-PKKIEFELMEIVP------KE 172
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
W C +QL+ G+ C KP C+ C + C +
Sbjct: 173 KWSLFC-----------HQLVYHGRAVCKARKPECDKCAIIDYCDY 207
>gi|416892847|ref|ZP_11924171.1| endonuclease III [Aggregatibacter aphrophilus ATCC 33389]
gi|347814545|gb|EGY31194.1| endonuclease III [Aggregatibacter aphrophilus ATCC 33389]
Length = 211
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
+A+ V + E IK G+ N AE + L+ +H +VP D+A L
Sbjct: 62 QAILALGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG-------EVPEDRAA--LE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V H VDT++ R+ R G+ P + ++ V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRSGFAPGK-----------DVVKVEE 161
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ K + P K+D +H+ LI G+ C KP C AC + C +
Sbjct: 162 KLIKVV-PAEFKVD------VHHWLILHGRYTCVARKPRCGACIIEDLCEY 205
>gi|422441779|ref|ZP_16518588.1| putative endonuclease III [Propionibacterium acnes HL037PA3]
gi|422473103|ref|ZP_16549584.1| putative endonuclease III [Propionibacterium acnes HL037PA2]
gi|422573388|ref|ZP_16648950.1| putative endonuclease III [Propionibacterium acnes HL044PA1]
gi|313835761|gb|EFS73475.1| putative endonuclease III [Propionibacterium acnes HL037PA2]
gi|314928435|gb|EFS92266.1| putative endonuclease III [Propionibacterium acnes HL044PA1]
gi|314970131|gb|EFT14229.1| putative endonuclease III [Propionibacterium acnes HL037PA3]
Length = 189
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D + L A+V E+ + G AER+ +LV + + VP D D
Sbjct: 24 DTQTLADADVGEVEAVVAPLGFGPTRAERLVSMATQLVDDFDGV-------VPDDL--DS 74
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ V DT+V R++ RLGW P +++ L EL+
Sbjct: 75 LVTLPGVGRKTANVVLGNAYGVPGITPDTHVMRVSRRLGWTD-ATTPAKVEVDLAELFDP 133
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA 607
E W LC ++LI G+ C +P C CP+ C F
Sbjct: 134 SE------WVMLC-----------HRLIWHGRRSCHSRRPACGVCPVAEWCPSFG 171
>gi|326791276|ref|YP_004309097.1| endonuclease III [Clostridium lentocellum DSM 5427]
gi|326542040|gb|ADZ83899.1| endonuclease III [Clostridium lentocellum DSM 5427]
Length = 230
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
+ EA A +K++ EAIK G A+ + RLV +VP D +
Sbjct: 62 NVEAFATAELKDVEEAIKSTGFYKNKAKNIIACSRRLVECFNG-------EVPSDI--ES 112
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+++ G+G K+ +R H + VDT+V RI++R G P + PV
Sbjct: 113 LVTLAGVGRKTANVIRGNIFHIPSIVVDTHVKRISIRWGITPYED-------------PV 159
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
I+K L + KL + Q+I G+ CT P C C C
Sbjct: 160 --QIEKDL---MTKLPDSHWIRYNTQVIAHGRSICTARSPKCLNCMFLSHC 205
>gi|366166746|ref|ZP_09466501.1| HhH-GPD family protein [Acetivibrio cellulolyticus CD2]
Length = 227
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 16/177 (9%)
Query: 432 LDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKD 491
LD L +++ I E IK G N A +K + +V E +L+ + P ++
Sbjct: 63 LDAGKLYECDIEIIKELIKPAGFFNRKAVILKSVVAFVVEEFEG-NLDKMFKTPLGVLRE 121
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
LL +RG+G ++ + + L + F VD RI RLG++ +Q ++ P
Sbjct: 122 MLLKVRGIGPETADSILLYAGYKKIFVVDAYTVRIFSRLGFIKNDEKYHDVQAFFMKHLP 181
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
E + Y + H ++ G C+ KP C +C ++ C S
Sbjct: 182 --EEVDLY-------------NQFHALIVKLGSDCCSGKKPKCASCVLKSRCNETGS 223
>gi|157826446|ref|YP_001495510.1| endonuclease III [Rickettsia bellii OSU 85-389]
gi|157801750|gb|ABV78473.1| Endonuclease III [Rickettsia bellii OSU 85-389]
Length = 213
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A R+G + PE+++ LL++
Sbjct: 111 LVKLPGVGRKTANVVLNCLFGLPTMAVDTHVFRVAKRIG-LAKGNTPEAVEKELLQI--- 166
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASA 609
+D + L H+ LI G+ C KP+C CP++ C ++ SA
Sbjct: 167 --------------IDGKWLSHAHHWLILHGRYICKARKPDCEICPIKEYCEYYKSA 209
>gi|325275201|ref|ZP_08141168.1| endonuclease III [Pseudomonas sp. TJI-51]
gi|324099688|gb|EGB97567.1| endonuclease III [Pseudomonas sp. TJI-51]
Length = 212
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EA+ V+ +SE IK G+ N A+ + + L+ HGS VP + ++ L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHGS-------QVP--QTREALE 112
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 554
++ G+G K+ V VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPTMAVDTHIFRVSNRTGIAPGKTVLE-VEKKLVKFVP--- 168
Query: 555 SIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|70732175|ref|YP_261931.1| endonuclease III [Pseudomonas protegens Pf-5]
gi|68346474|gb|AAY94080.1| endonuclease III [Pseudomonas protegens Pf-5]
Length = 212
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ +SE IK G+ N A+ + + LV H S +VP + ++ L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHNS-------EVP--QTREELEA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP---- 168
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ L + H+ LI G+ C KP C +C + C +
Sbjct: 169 -------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|386348174|ref|YP_006046422.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Rhodospirillum rubrum F11]
gi|346716610|gb|AEO46625.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Rhodospirillum rubrum F11]
Length = 212
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 43/212 (20%)
Query: 409 ESLRKEVQRNSGKQERSRD---RMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDF 465
++ K V R +G + D +M +L EALR I+ G+ N A +
Sbjct: 41 QATDKGVNRATGPLFQVADTPAKMVALGEEALR--------GYIRTIGLFNTKARNVIAL 92
Query: 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGR 525
L+ EHG +VP D+A L ++ G+G K+ V + VDT++ R
Sbjct: 93 SQALIDEHGG-------EVPCDRAA--LETLPGVGRKTANVVLNIAFGQPTMAVDTHIFR 143
Query: 526 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585
+A R G P + P ++++ L + P + + W LI G+
Sbjct: 144 VANRTGLAPGKT-PLAVEIGLEAVIPEGYRLHAHHW-----------------LILHGRY 185
Query: 586 FCTKSKPNCNACPMRGECRHFASAFASARLAL 617
C KP C CP+R C F LAL
Sbjct: 186 VCKARKPECPLCPVRDCC-----GFPDKTLAL 212
>gi|260587448|ref|ZP_05853361.1| 8-oxoguanine DNA glycosylase [Blautia hansenii DSM 20583]
gi|331083728|ref|ZP_08332839.1| hypothetical protein HMPREF0992_01763 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542315|gb|EEX22884.1| 8-oxoguanine DNA glycosylase [Blautia hansenii DSM 20583]
gi|330403939|gb|EGG83491.1| hypothetical protein HMPREF0992_01763 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 272
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGR 525
G IDL+ + + KAK+ LL I G+G+K +C+ L LHHL AFPVDT++ +
Sbjct: 183 GEIDLQAIEKMKYAKAKEELLKIFGVGVKVADCICLFGLHHLEAFPVDTHINQ 235
>gi|357042445|ref|ZP_09104150.1| endonuclease III [Prevotella histicola F0411]
gi|355369397|gb|EHG16792.1| endonuclease III [Prevotella histicola F0411]
Length = 215
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D +A+ A V+++ E +K N A + + LV + G +VP D D
Sbjct: 61 DAKAMAKATVEDVFEYVKSVSYPNAKATHLVEMSKMLVEKFGG-------EVPSDP--DE 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLELYP 551
L + G+G K+ ++ + VDT+V R++ RLG VP P ++ +L++
Sbjct: 112 LTQLPGVGRKTANVIQAVWFGKPTLAVDTHVYRVSHRLGLVPSTANNPRKVEDYLMK--- 168
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
+ + + H+ ++ G+ C +KP+C CP C
Sbjct: 169 --------------NISTDEVSDAHHWILLHGRYVCKSAKPDCEHCPFDAIC 206
>gi|328956172|ref|YP_004373505.1| DNA-(apurinic or apyrimidinic site) lyase [Coriobacterium glomerans
PW2]
gi|328456496|gb|AEB07690.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Coriobacterium glomerans PW2]
Length = 220
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A+ +E+++ I+ G A+ + +V + G +VP D + L+
Sbjct: 69 EALASASPEEVADVIRSLGFYKTKAKHAVEAAQMIVSDFGG-------EVPADMKQ--LM 119
Query: 495 SIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLH--LLELYP 551
+ G+G K+ V ++ + + VDT+V RIA RLG P L + L+ LL L P
Sbjct: 120 RLPGVGRKTANIVLNVSFNIVEGIAVDTHVNRIAHRLGLSPRTHLNDPLKTEQDLLGLLP 179
Query: 552 VLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
W +++Q I G+ C P CN CP+ C
Sbjct: 180 ------SQWWG-----------SVNHQWIKLGREICIARNPRCNLCPLADIC 214
>gi|291522888|emb|CBK81181.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[Coprococcus catus GD/7]
Length = 271
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 526
G +DL W+ + KA+ LL + G+G K +C+ L LHHL AFPVDT++ ++
Sbjct: 183 GEVDLAWISSLNYQKARAELLKLFGVGEKVADCICLFALHHLDAFPVDTHIRQV 236
>gi|162453330|ref|YP_001615697.1| endonuclease III [Sorangium cellulosum So ce56]
gi|161163912|emb|CAN95217.1| putative endonuclease III [Sorangium cellulosum So ce56]
Length = 208
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ +EI++ I+ G A +K R+ EHG + VP + + L +
Sbjct: 64 AMAAVPTEEIAQLIRRIGFAPTKARHLKALSERIATEHGGV-------VP--ASFEALEA 114
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V H AFPVDT++ R+A R G + + E+ + L +P +
Sbjct: 115 LPGVGHKTASVVMAQAFGHPAFPVDTHIHRLAFRWGLSSGRDVVET-ERDLKRTFPPEQ- 172
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPM 599
W + LH QLI FG+ C + + CP+
Sbjct: 173 -----WNK-----------LHLQLIYFGREHCPALRHDMTGCPI 200
>gi|326798003|ref|YP_004315822.1| endonuclease III [Sphingobacterium sp. 21]
gi|326548767|gb|ADZ77152.1| endonuclease III [Sphingobacterium sp. 21]
Length = 221
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 26/178 (14%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
D E L A+V+E+ I+ N A+ + L LE P D
Sbjct: 61 DAETLAAASVEEVFTYIRSVSYPNNKAKHLVGMAKML--------LEKFEGTIPSDIND- 111
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L + G+G K+ + + A VDT+V R++ R+G P +++ L+ P
Sbjct: 112 LQKLPGVGRKTANVIASVVYDAPAIAVDTHVFRVSNRIGLTNNAKTPLAVEKQLVHYLP- 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610
+ TL H+ LI G+ C +P C+ CP+ C+++ +
Sbjct: 171 ----------------KNTLAVAHHWLILHGRYICVARRPKCDECPITYLCKYYEKVY 212
>gi|257869416|ref|ZP_05649069.1| endonuclease III [Enterococcus gallinarum EG2]
gi|257803580|gb|EEV32402.1| endonuclease III [Enterococcus gallinarum EG2]
Length = 221
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 435 EALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL 494
EAL A V+EI E I+ G+ A+ +K ++L+ VP + ++ L+
Sbjct: 63 EALAAAPVEEIIEKIRTIGLYRNKAKNIKACASQLIERFNG-------QVP--RTREELV 113
Query: 495 SIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL- 553
S+ G+G K+ V A VDT+V R+ RL L ++LE+ L
Sbjct: 114 SLPGVGRKTANVVLGDAFGIPAIAVDTHVERVTKRLRIC-------RLDANVLEVEQTLM 166
Query: 554 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
+ + + LW + H+ LI FG+ CT P C CP+ C+
Sbjct: 167 KKVPEDLWVKT-----------HHTLIFFGRYHCTARAPKCEVCPLLTMCQ 206
>gi|255528039|ref|ZP_05394875.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296185709|ref|ZP_06854118.1| endonuclease III [Clostridium carboxidivorans P7]
gi|255508278|gb|EET84682.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296049837|gb|EFG89262.1| endonuclease III [Clostridium carboxidivorans P7]
Length = 212
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
PD ++ LL + G+G K+ V A VDT+V R++ RLG + PE ++
Sbjct: 104 PDTMEE-LLKLPGVGRKTANVVLSNAFGVPAIAVDTHVFRVSNRLG-IAKGDTPEQVEKG 161
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L++ P + +W + H+ LI G++ C KP+C CP+ C +
Sbjct: 162 LMKNVP------RDMWS-----------DTHHYLIWHGRLICKSRKPDCEKCPLAPYCEY 204
Query: 606 FASAFASA 613
F+ SA
Sbjct: 205 FSGGDTSA 212
>gi|289208913|ref|YP_003460979.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
gi|288944544|gb|ADC72243.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
Length = 216
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKA 489
D LD E+L + ++E I+ G N+ A+R++ L R + + G + E L + +
Sbjct: 56 DVLDPESLLELPHEILAEHIRPSGYFNVKADRLRHLL-RFLEQQGGV--EALARMETEAL 112
Query: 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 549
+ LLS++G+G ++ + + L F VD R+ RLG LP H
Sbjct: 113 RSALLSVKGVGPETADDIVLYAFERPVFVVDAYTRRLFERLG------LP-----HARGA 161
Query: 550 YPVLES-IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
Y L ++ L P D + +LH ++ GK C + KP C CP+ C
Sbjct: 162 YDDLRVWVESELGP-----DAQAFNDLHALIVEHGKQRC-RPKPLCQGCPLSDVC 210
>gi|407972954|ref|ZP_11153867.1| endonuclease III [Nitratireductor indicus C115]
gi|407431725|gb|EKF44396.1| endonuclease III [Nitratireductor indicus C115]
Length = 246
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 32/177 (18%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
++ + I+ G+ A+ + L+R+HGS VP ++D L ++ G+G K+
Sbjct: 94 KVGDHIRTIGLWRNKAKNVIALSEALIRDHGS-------QVP--DSRDALTTLPGVGRKT 144
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V + VDT++ RI R+G P + PE ++ L+ + P
Sbjct: 145 ANVVLNMAFGQPTMAVDTHILRIGNRIGLAPGKT-PEQVEAILVRIIPA----------- 192
Query: 564 LCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGP 620
+ H+ LI G+ C KP+C AC + C+ A A+P P
Sbjct: 193 ------EYMRHAHHWLILHGRYVCKARKPDCPACVIADICKS-----AEKTTAIPAP 238
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,502,264,963
Number of Sequences: 23463169
Number of extensions: 620275670
Number of successful extensions: 1453755
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 3596
Number of HSP's that attempted gapping in prelim test: 1449037
Number of HSP's gapped (non-prelim): 5320
length of query: 921
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 769
effective length of database: 8,792,793,679
effective search space: 6761658339151
effective search space used: 6761658339151
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 82 (36.2 bits)