BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002448
(921 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A ++ L+ ++ +VP D+ D L+ + G+G
Sbjct: 73 LEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRDR--DELMKLPGVGR 123
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLW 561
K+ V + A VDT+V R++ RLG+ +++ I K W
Sbjct: 124 KTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKT------LMKIIPKEEW 177
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
H+++I FG+ C P C +CP+ C
Sbjct: 178 S-----------ITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + I+ G+ A ++ L+ ++ +VP D+ D L+ + G+G
Sbjct: 73 LEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRDR--DELMKLPGVGR 123
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLW 561
K+ V A VDT+V R++ RLG+ +++ I K W
Sbjct: 124 KTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKT------LMKIIPKEEW 177
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
H+++I FG+ C P C +CP+ C
Sbjct: 178 S-----------ITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+ E +E E A+ +KD ++R+ +G ++LE+++ + ++ + L G+G
Sbjct: 164 LHEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFMGVGP 221
Query: 502 KSVECVRLLTLH-HLAFPVDTNVGRIAVRL 530
+ +C+ L ++ + AFPVDT V + + L
Sbjct: 222 QVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+ E +E E A+ +KD ++R+ +G ++LE+++ + ++ + L G+G
Sbjct: 164 LHEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFMGVGP 221
Query: 502 KSVECVRLLTLH-HLAFPVDTNVGRIAVRL 530
+ +C+ L ++ + AFPVDT V + + L
Sbjct: 222 QVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+ E +E E A+ +KD ++R+ +G ++LE+++ + ++ + L G+G
Sbjct: 164 LHEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFMGVGP 221
Query: 502 KSVECVRLLTLH-HLAFPVDTNVGRIAVRL 530
+ +C+ L ++ + AFPVDT V + + L
Sbjct: 222 QVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
+ E +E E A+ +KD ++R+ +G ++LE+++ + ++ + L G+G
Sbjct: 164 LHEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFXGVGP 221
Query: 502 KSVECVRLLTLH-HLAFPVDTNVGR 525
K +C+ L + + AFPVDT V +
Sbjct: 222 KVADCIXLFSXQKYSAFPVDTWVKK 246
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1J8R|A Chain A, Binary Complex Of The Papg Receptor-Binding Domain Bound
To Gbo4 Receptor
pdb|1J8S|A Chain A, Papg Adhesin Receptor Binding Domain-Unbound Form
Length = 196
Score = 32.7 bits (73), Expect = 0.89, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 120 PPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESG---- 175
P NG F +V N + + + NDS F +GY ++A D GN Q+ G
Sbjct: 67 PKKVXTQNGYPLFIEVHNKGSWSEENTGDNDSYFFLKGYKWDERAFDAGNLCQKPGEITR 126
Query: 176 -LESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSY 214
E D++ + L ++ ++S + H SY
Sbjct: 127 LTEKFDDIIFKVALPADLPLGDYSVKIPYTSGXQRHFASY 166
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 362 LSDNKLIEPNSVEQVLSAHKVYDETNPN--ISKSKKRKADGEKKNAIDWESLRKEVQRNS 419
LSD K I NSV+ +L A+ +D + IS+ K+ D + IDW RKE N+
Sbjct: 65 LSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW---RKE---NT 118
Query: 420 GKQERSRDRMDSLDY 434
G RMD DY
Sbjct: 119 GIGPPLSIRMDEKDY 133
>pdb|1RN7|A Chain A, Structure Of Human Cystatin D
pdb|1ROA|A Chain A, Structure Of Human Cystatin D
Length = 122
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 576 HYQLITFGKVFCTKSKPNCNACPM 599
+Y + FG+ CTKS+PN + CP
Sbjct: 64 YYFNVKFGRTTCTKSQPNLDNCPF 87
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 141 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 195
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 196 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVEQRRVDFCKD 247
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 138 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 192
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 193 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVEQRRVDFCKD 244
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 138 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 192
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 193 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 244
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 137 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 191
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 192 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 243
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 138 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 192
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 193 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVDQRRVDFCKD 244
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 160 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 214
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 215 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 266
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 106 IRSCSGSNSEAEDSPPGCKLDNGS----ANFQQVGNATLF-----QDFYSCINDSSLFQE 156
I++C G+ + P +DN + N +V A+++ DF C + + E
Sbjct: 160 IQACRGNQHDVPVIPLDV-VDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----E 214
Query: 157 GYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
GY+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 215 GYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 266
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 164 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 222
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 223 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 164 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 222
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 223 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 164 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 222
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 223 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 124 KLDNGSANFQQVGNATLF-----QDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLES 178
KLD N +V A+++ DF C + + EGY+ ++ +G + Q+ E
Sbjct: 164 KLDT---NITEVDAASVYTLPAGADFLMCYSVA----EGYYSHRETVNGSWYIQDL-CEM 215
Query: 179 IDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
+ GSSL FT+LL N Q +V F D
Sbjct: 216 LGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 246
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 164 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 222
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 223 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 269
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 169 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 227
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 228 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 274
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 172 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 230
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 231 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 277
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 170 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 228
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 229 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 275
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 163 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 221
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 222 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 268
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 124 KLDNGSANFQQVGNATLF-----QDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLES 178
KLD N +V A+++ DF C + + EGY+ ++ +G + Q+ E
Sbjct: 177 KLDT---NITEVDAASVYTLPAGADFLMCYSVA----EGYYSHRETVNGSWYIQDL-CEM 228
Query: 179 IDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
+ GSSL FT+LL N Q +V F D
Sbjct: 229 LGKYGSSLEFTELLTLVNRKVSQRRVDFCKD 259
>pdb|3P45|B Chain B, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|D Chain D, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|F Chain F, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|H Chain H, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|J Chain J, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|L Chain L, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|N Chain N, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|P Chain P, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 108
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 143 DFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQN 199
DF C + + EGY+ ++ +G + Q+ E + GSSL FT+LL N Q
Sbjct: 13 DFLMCYSVA----EGYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQR 67
Query: 200 QVGFSSD 206
+V F D
Sbjct: 68 RVDFCKD 74
>pdb|3QNW|B Chain B, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|D Chain D, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|F Chain F, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|H Chain H, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 100
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 143 DFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQN 199
DF C + + EGY+ ++ +G + Q+ E + GSSL FT+LL N Q
Sbjct: 12 DFLMCYSVA----EGYYSHRETVNGSWYIQDL-CEMLGKYGSSLEFTELLTLVNRKVSQR 66
Query: 200 QVGFSSD 206
+V F D
Sbjct: 67 RVDFCKD 73
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 428 RMDSLDYE---ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSID-LEWLRD 483
++D + Y +L+ E+ +++ G+ A + ++ E G + L+ LR+
Sbjct: 170 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRE 228
Query: 484 VPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR 529
++A L + G+G K +C+ L+ L A PVD ++ IA R
Sbjct: 229 SSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,411,508
Number of Sequences: 62578
Number of extensions: 1052941
Number of successful extensions: 1820
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 41
length of query: 921
length of database: 14,973,337
effective HSP length: 108
effective length of query: 813
effective length of database: 8,214,913
effective search space: 6678724269
effective search space used: 6678724269
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)