BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002448
(921 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/933 (55%), Positives = 628/933 (67%), Gaps = 48/933 (5%)
Query: 1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
MSLAARFP K S+ R + +++VE+PE CI NE W E ++HP + S
Sbjct: 1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106
Query: 59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
E R SG+ + + E LEEE++SSQDS I QS G + SCS S S+AE
Sbjct: 1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166
Query: 119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
C K +G++ Q G+ L + N+ EG ++ E Q++ L
Sbjct: 1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226
Query: 177 ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
E N S+ F Q P+N + SS YE T +L+ E + G
Sbjct: 1227 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1280
Query: 232 SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
SW SIS + KN++ R P E G+ + STP ++ LS S
Sbjct: 1281 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1335
Query: 282 LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
+ + Q N Q + H ++TF + ++ +E+ + +QN+
Sbjct: 1336 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1384
Query: 342 GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
G + ++T D N N L+E NS + +A + Y ETN I + K
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1443
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
KK W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1444 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1503
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1504 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1563
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1564 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1623
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P E P V
Sbjct: 1624 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVA 1683
Query: 642 INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
I + LP P + SLA RE CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1684 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1741
Query: 698 IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
IPTIKLNIE+F + L+ +M+ MELQE DMSKALVAL+P SIP PKLKN+SRLRTEHQ
Sbjct: 1742 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1801
Query: 758 VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C K SGK+C ++TC
Sbjct: 1802 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1861
Query: 818 FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1862 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1921
Query: 878 WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1922 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1954
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/522 (69%), Positives = 431/522 (82%), Gaps = 10/522 (1%)
Query: 392 KSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKE 451
K K +K E+K A DW+ LR+E Q +G +E++R MD++D++A+R A+VKE++E IK
Sbjct: 843 KEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKS 902
Query: 452 RGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
RGMN+ LAER++ FL+RLV +HGSIDLEWLRDVPPDKAK+YLLS GLGLKSVECVRLLT
Sbjct: 903 RGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLT 962
Query: 512 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 571
LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ+T
Sbjct: 963 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKT 1022
Query: 572 LYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMP 631
LYELHYQ+ITFGKVFCTKSKPNCNACPM+GECRHFASAFASARLALP E+ M
Sbjct: 1023 LYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEK------GMG 1076
Query: 632 TMAERNPSVVINPMPLPSPEKSSL---AEVRREIGKCEPIIEEPATPEQECTEITESDIE 688
T ++NP + P P + S + +E +++ CEPIIEEPA+PE E E++ +DIE
Sbjct: 1077 T-PDKNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIE 1135
Query: 689 DAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKN 748
+AF+EDP+EIPTI+LN++ FT NL+ M+ ELQ+ +MS ALVAL + AS+P PKLKN
Sbjct: 1136 EAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKN 1195
Query: 749 VSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKES 808
+S+LRTEH+VYELPD HPLL +++REPDDP YLLAIWTPGETA+SIQ S C + +
Sbjct: 1196 ISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQAN 1255
Query: 809 GKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
G LCDE+TCFSCNS++ET SQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSLN
Sbjct: 1256 GMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLN 1315
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PI+VPRE +W LPRR VYFGTSV +IFKGLSTE IQ CFWKG
Sbjct: 1316 PINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKG 1357
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/522 (62%), Positives = 384/522 (73%), Gaps = 23/522 (4%)
Query: 402 KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
+K ++DW+SLRKE + K+ER+ MD++D++ALRC +V +I+ I +RGMNNMLAER
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 462 MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
+K FLNRLV++HGSIDLEWLRDVPPDKAK+YLLSI GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 522 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
NVGRIAVRLGWVPLQPLP+ LQ+HLLELYPVLES+QKYLWPRLCKLDQ+TLYELHY +IT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMIT 964
Query: 582 FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
FGKVFCTK KPNCNACPM+ ECRH++SA ASARLALP PEE S + + VV
Sbjct: 965 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1024
Query: 642 INPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED--------AFYE 693
+N P + E +R CEPIIEEPA+PE E E DIED E
Sbjct: 1025 VNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPE---PEYIEHDIEDYPRDKNNVGTSE 1080
Query: 694 DP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNV 749
DP D IPTI LN E T + + + +E S LV L+ AA+IP KLK
Sbjct: 1081 DPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIK 1134
Query: 750 SRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESG 809
+LRTEH V+ELPD H +LEG +RRE +D PYLLAIWTPGET NSIQ P+ RC ES
Sbjct: 1135 EKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESN 1194
Query: 810 K-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLN 868
LC+E CF CN RE SQTVRGT+LIPCRTAMRG FPLNGTYFQ NEVFADHDSS+N
Sbjct: 1195 NTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSIN 1254
Query: 869 PIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
PIDVP E +W+L RR+ Y G+SVSSI KGLS E I++ F +G
Sbjct: 1255 PIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1296
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/536 (48%), Positives = 345/536 (64%), Gaps = 18/536 (3%)
Query: 385 ETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKE 444
E + N +K K K + +DW +LR+ + + E MDS+++ +R +
Sbjct: 479 EDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEM---HMDSVNWSDVRLSGQNV 535
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ IK+RG +L+ER+ FLN V ++G+IDLEWLR+ P K YLL I G+GLKS
Sbjct: 536 LETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSA 595
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
ECVRLL L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRL
Sbjct: 596 ECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRL 655
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624
CKL Q TLYELHYQ+ITFGKVFCTK+ PNCNACPM+ EC++FASA+ S+++ L PEEK
Sbjct: 656 CKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM 715
Query: 625 IVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKC-EPIIEEPATPEQECTEIT 683
+T M + V ++ + + ++ + C +P++E P++P E E T
Sbjct: 716 HEPNTF--MNAHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPEST 773
Query: 684 ESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQS--YMQEKMELQECDMSKALVALNPD 737
DIED Y+ +P I +++ +++ + +M + ++SKALV P+
Sbjct: 774 --DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPE 831
Query: 738 AASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETAN 794
A IP K+K +RLRTEH VY LPD+H LL +RR+ DDPSPYLLAIW PGET++
Sbjct: 832 NACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSS 891
Query: 795 SIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYF 854
S P+ +C S + KLC K C C ++RE NS RGT+LIPCRTAMRG+FPLNGTYF
Sbjct: 892 SFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 855 QVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
Q NEVFADH++SLNPI RE L +R +Y G++V+SIFK L T I+ CFW G
Sbjct: 951 QTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTG 1006
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGL 499
A +++ + IKE GM AER+ + LV ++G PD ++ LL + G+
Sbjct: 60 AKPEDLYDLIKESGMYRQKAERIVEISRILVEKYGG--------RVPDSLEE-LLKLPGV 110
Query: 500 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 559
G K+ V + A VDT+V RI+ RLGWV + PE + L +L P +
Sbjct: 111 GRKTANIVLWVGFKKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------ED 163
Query: 560 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
LW ++ ++ FG+ C P C C ++ C +
Sbjct: 164 LWG-----------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 39/178 (21%)
Query: 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAK 490
L E + ++VK I+E IK+ G +N A +K + ++RE G P + K
Sbjct: 90 GLTIERVANSDVKHINECIKKVGFHNRKAANLKK-IAEILREKG----------LPREMK 138
Query: 491 DYLLSIRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
D L+S+ G+G K + LL + H + VDT+V RI+ R+G V + + ES +
Sbjct: 139 D-LISLPGIGNK----MALLYMSHACNRTVGISVDTHVHRISNRIGLVRTRDV-ESTRRE 192
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
L + P E W +T+ + L+ FG+ C +P C C +RG C
Sbjct: 193 LERVVPRKE------W--------KTINNI---LVGFGQTICVAKRPRCEECCIRGRC 233
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
++E+ + IK G+ A+ ++ ++ ++G +VP D+ D L+ + G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG-------EVPRDR--DELVKLPGVGR 120
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V + A VDT+V R++ RLG + VLE ++K L
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTLM 166
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECR 604
++ K D H++LI FG+ C P C CP+ CR
Sbjct: 167 RKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
+ + IK G+ N A+ + L+ + S VP D + L+ + G+G K+
Sbjct: 72 LKKYIKSIGLFNSKAKNIIALCKILISNYQS-------SVPNDFKE--LIKLPGVGRKTA 122
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
V VDT+V R+A R+G PE ++ LL++
Sbjct: 123 NVVLNCLFGMPTMAVDTHVFRVAKRIGLARGNS-PEIVEKELLQI--------------- 166
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 612
++++ L H+ LI G+ C KP+C+ CP++ C ++ S S
Sbjct: 167 --INEKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCEYYNSPIIS 212
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 428 RMDSLDYEALRCANVKE--ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVP 485
+M+ L E ++ NV E + E I+ G N+ A+R+K+ +V +G+ + D
Sbjct: 57 KMEDL-LEEVKILNVDEDKLKELIRPAGFYNLKAKRLKNVTKFIVENYGNTEEMAKTDKD 115
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
+ LLSI G+G ++ + + L L +F VD R+ RLG + + + ++
Sbjct: 116 TLILRAELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLGVINEKAKYDEIK-- 173
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
E +K L P+ D E H ++ K FC K K C+ CP++ C
Sbjct: 174 --------EIFEKNL-PK----DLEIYKEYHALIVEHCKKFCRK-KALCDNCPIKEFC 217
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 47.4 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
L+ + G+G K+ V VDT+V R+A R+G + PE ++ LL++
Sbjct: 111 LIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVANRIG-LAKGDTPEIVENELLQI--- 166
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+D + L H+ LI G+ C KP+C+ CP++ C ++
Sbjct: 167 --------------IDTKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCDYY 206
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P+ K+ L+ + G+G K+ V VDT+V R++ R+G
Sbjct: 105 PNNFKE-LVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIG-------------- 149
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L ++K L L +D++ L H+ LI G+ C KP CN CP++ C +
Sbjct: 150 -LAKGNTAAIVEKEL---LQIIDEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEY 205
Query: 606 FASAFAS 612
+ + F+S
Sbjct: 206 YINTFSS 212
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 42.0 bits (97), Expect = 0.021, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 486 PDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 545
P+ K+ L+ + G+G K+ V VDT+V R++ R+G
Sbjct: 105 PNDFKE-LVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIG-------------- 149
Query: 546 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
L ++K L L +D++ L H+ L+ G+ C KP+C C ++ C +
Sbjct: 150 -LAKGNTTVIVEKEL---LQIIDEKWLTHAHHWLVLHGRYICKARKPSCRICHIKEYCEY 205
Query: 606 FASAFAS 612
+ + FAS
Sbjct: 206 YINTFAS 212
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 41.6 bits (96), Expect = 0.027, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 444 EISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503
EI++ IKE G++N AE++K+ ++ ++G VP + + +L + G+G +
Sbjct: 77 EIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVP--RNRKAILDLPGVGKYT 127
Query: 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 563
V L A VD N R+ R + Y L K LW
Sbjct: 128 CAAVMCLAFGKKAAMVDANFVRVINR---------------YFGGSYENLNYNHKALWEL 172
Query: 564 LCKL-DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
L + + L+ F + C KP C C M C ++
Sbjct: 173 AETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 216
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVRLGWVPLQPLPES 541
D+P + D L ++ G+G K V + + VDT+V RI+ RLGW+ PE
Sbjct: 141 DIP--DSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRLGWIKTST-PEK 197
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
Q L L P K W +++ L+ FG++ C +P C C R
Sbjct: 198 TQKALEILLP------KSEW-----------QPINHLLVGFGQMQCQPVRPKCGTCLCRF 240
Query: 602 EC 603
C
Sbjct: 241 TC 242
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V+ + IK G+ N AE + L+ +H +VP D+A L ++ G+G
Sbjct: 69 VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V VDT++ R+ R + P + + E ++ LL++ P +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNV-EQVEEKLLKVVPAEFKV----- 173
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ H+ LI G+ C KP C +C + C +
Sbjct: 174 ------------DCHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501
V+ + IK G+ N AE + L+ +H +VP D+A L ++ G+G
Sbjct: 69 VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGR 119
Query: 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 561
K+ V VDT++ R+ R + P + + E ++ LL++ P +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNV-EQVEEKLLKVVPAEFKV----- 173
Query: 562 PRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+ H+ LI G+ C KP C +C + C +
Sbjct: 174 ------------DCHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIA 527
L+ +P +KA++ L + G+G K +C+ L+++ HL + PVD ++ RIA
Sbjct: 229 LKSMPFEKAREELTLLPGIGYKVADCICLMSMGHLESVPVDIHIYRIA 276
>sp|Q3T0P5|CASP6_BOVIN Caspase-6 OS=Bos taurus GN=CASP6 PE=2 SV=1
Length = 293
Score = 37.7 bits (86), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 106 IRSCSGSNSEAEDSPPGC---KLDNGSANFQQVGNATLF-----QDFYSCINDSSLFQEG 157
I++C GS + P + D AN QV A+++ DF C + EG
Sbjct: 160 IQACRGSQHDVPVIPLDVVDHRTDTPDANLTQVDAASVYTLPAGADFLMCYS----VAEG 215
Query: 158 YHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLL---NFNSPQNQVGFSSD 206
Y+ ++ +G + Q+ E + GSSL FT+LL N Q +V F D
Sbjct: 216 YYSHRETVNGSWYIQDL-CEMLGKFGSSLEFTELLTLVNRKVSQRRVDFCRD 266
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 557
G+G + + + + VD NV R+ R+ + P + HL +L L
Sbjct: 185 GVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVRAIGADPTSSFVSHHLWDLAQQL---- 240
Query: 558 KYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL 617
+D + + + G CT +P CN CP++ CR AL
Sbjct: 241 ---------VDPARPGDFNQAAMELGATVCTPQRPLCNHCPVQSLCRAHQRVGQGRLSAL 291
Query: 618 PG 619
PG
Sbjct: 292 PG 293
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR-LG 531
G L+ LR P ++A L ++ G+G K +C+ L+ L A PVD +V +IA R G
Sbjct: 221 GPAWLQQLRVAPYEEAHKALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYG 280
Query: 532 WVP 534
W P
Sbjct: 281 WHP 283
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 37.4 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP-LQPLPE 540
D+P A+ L+++ G+G K + ++ VDT+V RIA RL W + PE
Sbjct: 191 DIPASVAE--LVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANRLRWTKKMTKTPE 248
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
+ +L E P + LW E++ L+ FG+ C P C AC +
Sbjct: 249 ETRKNLEEWLP------RVLWS-----------EVNGLLVGFGQQICLPVHPRCQACLNK 291
Query: 601 GEC 603
C
Sbjct: 292 ALC 294
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 37.0 bits (84), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 482 RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAF-PVDTNVGRIAVR 529
+D + +++L+S G+G K +CV L+ LH PVD +V RIA R
Sbjct: 221 KDAQYEDVREHLMSYNGVGPKVADCVCLMGLHMDGIVPVDVHVSRIAKR 269
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 37.0 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 449 IKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508
IK G+ N AE + L+ +H +VP ++ + L ++ G+G K+ V
Sbjct: 76 IKTIGLFNSKAENIIKTCRDLIEKHNG-------EVPENR--EALEALAGVGRKTANVVL 126
Query: 509 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 568
H VDT++ R+ R + + ++ V E + K + P K+D
Sbjct: 127 NTAFGHPTIAVDTHIFRVCNRTNFAAGK-----------DVVKVEEKLLKVV-PNEFKVD 174
Query: 569 QRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRH 605
+H+ LI G+ C KP C +C + C +
Sbjct: 175 ------VHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVP-LQPLPE 540
D+P A+ L+++ G+G K + + VDT+V RIA RL W PE
Sbjct: 203 DIPASVAE--LVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPE 260
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
+ L E P + LW +E++ L+ FG+ C P C+AC +
Sbjct: 261 ETRAALEEWLP------RELW-----------HEINGLLVGFGQQTCLPVHPRCHACLNQ 303
Query: 601 GEC 603
C
Sbjct: 304 ALC 306
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 36.2 bits (82), Expect = 1.1, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP-LQPLPE 540
D+P A+ L+++ G+G K + ++ VDT+V RIA RL W PE
Sbjct: 196 DIPASVAE--LVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPE 253
Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMR 600
+ L E P + LW E++ L+ FG+ C +P C AC R
Sbjct: 254 ETRRALEEWLP------RELWS-----------EINGLLVGFGQQTCLPIRPRCQACLNR 296
Query: 601 GEC 603
C
Sbjct: 297 ALC 299
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 557
G+G + + + + VD NV R+ R+ + P + HL L L
Sbjct: 185 GVGRYTAGAIASIAFDQVTGVVDGNVLRVLCRVRAIGADPTSTLVSHHLWNLAQQL---- 240
Query: 558 KYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL 617
+D + + + G CT +P C+ CP++ CR + AL
Sbjct: 241 ---------VDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLCRAYQRVQRGQLSAL 291
Query: 618 PG 619
PG
Sbjct: 292 PG 293
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGECRHFAS 608
LI G + C KS P CN CP++ C+ + +
Sbjct: 182 LIDIGALICLKSNPKCNICPLKSTCKSYLN 211
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1
SV=1
Length = 365
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 479 EWL---RDVPPDKAKDYLLSIRGLGLKSVECVRLLTL-HHLAFPVDTNVGRIA 527
EWL R V +A L ++ G+G K C+ L +L H A PVDT+V +IA
Sbjct: 235 EWLLSLRKVELQEAVAALCTLPGVGPKVAACIALFSLDQHSAIPVDTHVWQIA 287
>sp|Q62158|TRI27_MOUSE Zinc finger protein RFP OS=Mus musculus GN=Trim27 PE=1 SV=2
Length = 513
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 682 ITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASI 741
IT D+++ + + + ++++FT +QS M++ EL+E + V L+PD A
Sbjct: 268 ITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYP 327
Query: 742 PAPKLKNVSRLRTEHQVYELPDS 764
N+ ++R + +LPD+
Sbjct: 328 SLILSDNLRQVRYSYLQQDLPDN 350
>sp|P14373|TRI27_HUMAN Zinc finger protein RFP OS=Homo sapiens GN=TRIM27 PE=1 SV=1
Length = 513
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 682 ITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASI 741
IT D+++ + + + ++++FT +QS M++ EL+E + V L+PD A
Sbjct: 268 ITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYP 327
Query: 742 PAPKLKNVSRLRTEHQVYELPDS 764
N+ ++R + +LPD+
Sbjct: 328 SLILSDNLRQVRYSYLQQDLPDN 350
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR-LG 531
G L+ LR ++A L ++ G+G K +C+ L+ L A PVD +V +IA R G
Sbjct: 221 GPAWLQQLRVASYEEAHKALCTLPGVGTKVADCICLMALDKPQAVPVDIHVWQIAHRDYG 280
Query: 532 WVP 534
W P
Sbjct: 281 WQP 283
>sp|P25441|RPC4_YEAST DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC53 PE=1
SV=2
Length = 422
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 672 PATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEK------------ 719
P E E + +I++A E P PT + E LQSY++E+
Sbjct: 204 PVRVRHEDVETVKREIQEALSEKPTREPTPSVKTEPVGTGLQSYLEERERQVNEKLADLG 263
Query: 720 --MELQECDMSKA---LVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLE 769
E Q D +A L LN D I KLK ++ V++LP P E
Sbjct: 264 LEKEFQSVDGKEAAAELELLNADHQHI-LRKLKKMNNKPERFMVFQLPTRLPAFE 317
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 33.5 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 445 ISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504
I E I++ G+ N + + L++ +G VP ++ + L S+ G+G K+
Sbjct: 77 IRENIRKLGLYNKKSSNILRTCEILLKRYGG-------KVPNNR--EDLESLPGVGRKTA 127
Query: 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 564
+ + VDT+V R+ R+G+ + +++ LL + P +K+
Sbjct: 128 NVILNVIFKKKTIAVDTHVFRLCNRIGFAKGTTV-LTVEKKLLNIVP-----EKF----- 176
Query: 565 CKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGEC 603
KL+ H I G+ CT P C+ C + C
Sbjct: 177 -KLN------FHAWFIMHGRYICTSRVPKCSKCIISSLC 208
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 579 LITFGKVFCTKSKPNCNACPMRGEC 603
++ G + CT+SKP C CP++ C
Sbjct: 184 MMDLGAMVCTRSKPKCTLCPLQNGC 208
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 482 RDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 541
+ + PD+ + ++ + G+G + + L+L+ +D NV RI VR + + L +
Sbjct: 101 KGIFPDQFSN-IIQLPGIGRSTAGAILSLSLNFFYPILDGNVKRILVR--YYGISGLLKD 157
Query: 542 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRG 601
++ +L+ ++ESI K +Q ++ G C KP C CP++
Sbjct: 158 KKIEK-KLWNIIESITPI--HNTGKFNQ--------GMMDIGASICISIKPKCTICPLKK 206
Query: 602 EC 603
EC
Sbjct: 207 EC 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,439,610
Number of Sequences: 539616
Number of extensions: 14912268
Number of successful extensions: 34900
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 34691
Number of HSP's gapped (non-prelim): 254
length of query: 921
length of database: 191,569,459
effective HSP length: 127
effective length of query: 794
effective length of database: 123,038,227
effective search space: 97692352238
effective search space used: 97692352238
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)