Query 002448
Match_columns 921
No_of_seqs 333 out of 1962
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 16:37:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002448.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1173-1177//hhsearch_pdb/002448hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 1.0 1 1 321.2 20.7 210 344-609 5-214 (226)
2 2abk_A Endonuclease III; DNA-r 1.0 1 1 316.6 15.8 208 344-608 1-208 (211)
3 3fsp_A A/G-specific adenine gl 1.0 1 1 312.9 17.4 220 350-626 14-237 (369)
4 3n5n_X A/G-specific adenine DN 1.0 1 1 309.6 16.6 217 347-610 13-235 (287)
5 1kea_A Possible G-T mismatches 1.0 1 1 300.8 17.7 214 343-609 3-219 (221)
6 1kg2_A A/G-specific adenine gl 1.0 1 1 297.4 20.3 214 352-622 6-224 (225)
7 1pu6_A 3-methyladenine DNA gly 1.0 1 1 250.4 13.7 199 348-585 3-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 1.0 1 1 208.3 9.8 148 380-589 42-196 (214)
9 3fhg_A Mjogg, N-glycosylase/DN 1.0 1 1 201.9 9.1 157 379-589 30-189 (207)
10 3n0u_A Probable N-glycosylase/ 1.0 1 1 201.3 5.8 138 379-549 47-194 (219)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=321.22 Aligned_cols=210 Identities=20% Similarity=0.327 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 74999999998676423788653478871233310135431013441012222322333444596899999985037644
Q 002448 344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423 (921)
Q Consensus 344 ~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~e 423 (921)
+.+++..+|+++|...|+.+...+.+. ++|+.||++||++|+++..+++ .|.+|+..
T Consensus 5 ~~~~~~~~i~~~L~~~y~~~~~~l~~~----------~pfe~Lv~~IlsQqts~~~v~~----~~~~l~~~--------- 61 (226)
T 1orn_A 5 LTKQQIRYCLDEMAKMFPDAHCELVHR----------NPFELLIAVVLSAQCTDALVNK----VTKRLFEK--------- 61 (226)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCCCSCCS----------SHHHHHHHHHHHTTSCHHHHHH----HHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCC----------CHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH---------
T ss_conf 067899999999998767667778779----------9899999999958786999999----99999998---------
Q ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 33576999999999719999999999822991899999999999998760997803431499457999987077766756
Q 002448 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503 (921)
Q Consensus 424 r~~~~~~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKT 503 (921)
++||++|+++++++|+++|+++||+++||++|+++++.+.++|+| .+|.. +++|++|||||+||
T Consensus 62 -------fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~T 125 (226)
T 1orn_A 62 -------YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRD--RDELMKLPGVGRKT 125 (226)
T ss_dssp -------CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT-------SCCSC--HHHHTTSTTCCHHH
T ss_pred -------CCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHHCCCCCHHH
T ss_conf -------789999985999999999997699199999999999999998089-------81899--99999879964899
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999983499133212389999988178899999899999999746844777775422200278252899999999993
Q 002448 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583 (921)
Q Consensus 504 AdvILlfalgrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fG 583 (921)
|++||+|+||+++||||+||.|++.|+||++...++++++..+++++|. ..+.++|++||.||
T Consensus 126 A~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~-----------------~~~~~~~~~lv~~G 188 (226)
T 1orn_A 126 ANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK-----------------EEWSITHHRMIFFG 188 (226)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCG-----------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCH-----------------HHHHHHHHHHHHHH
T ss_conf 9999999779954000799999999928877899999999999883674-----------------11999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCHHHHHH
Q ss_conf 85434689988899981000435521
Q 002448 584 KVFCTKSKPNCNACPMRGECRHFASA 609 (921)
Q Consensus 584 R~iC~arkP~C~~CPLrdlC~~~~~~ 609 (921)
|.+|++++|+|+.|||++.|+++.+.
T Consensus 189 ~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 189 RYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 99858999999999776542667624
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=316.58 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=182.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 74999999998676423788653478871233310135431013441012222322333444596899999985037644
Q 002448 344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423 (921)
Q Consensus 344 ~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~e 423 (921)
|.+++..+++++|...|+.+...+.+. ++|+.||+.|||+|+++..++++ |.+|+
T Consensus 1 ~~~~~~~~i~~~L~~~~~~~~~~~~~~----------~pfe~lv~~Il~qqts~~~v~~~----~~~l~----------- 55 (211)
T 2abk_A 1 MNKAKRLEILTRLRENNPHPTTELNFS----------SPFELLIAVLLSAQATDVSVNKA----TAKLY----------- 55 (211)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCCSSCCS----------SHHHHHHHHHHTTTSCHHHHHHH----HHHHT-----------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCC----------CHHHHHHHHHHHCCCCHHHHHHH----HHHHH-----------
T ss_conf 975689999999998857777677779----------98999999999677889999999----99999-----------
Q ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 33576999999999719999999999822991899999999999998760997803431499457999987077766756
Q 002448 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503 (921)
Q Consensus 424 r~~~~~~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKT 503 (921)
..++||++|+++++++|+++|+++||+++||++|+++++.+.+.|+| .+|.. +++|++|||||+||
T Consensus 56 -----~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g-------~~~~~--~~~L~~l~GIG~~t 121 (211)
T 2abk_A 56 -----PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPED--RAALEALPGVGRKT 121 (211)
T ss_dssp -----TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT-------SCCSC--HHHHHHSTTCCHHH
T ss_pred -----HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-------CCHHH--HHHHHHCCCCCHHH
T ss_conf -----98789999987799999999998699769999999999999998499-------84689--99998489997699
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999983499133212389999988178899999899999999746844777775422200278252899999999993
Q 002448 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583 (921)
Q Consensus 504 AdvILlfalgrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fG 583 (921)
|++||+|+||+++||||+||.|++.|+||... +++++++..+++++|. . .+.++|++||.||
T Consensus 122 A~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~~-~~~~~~~~~~~~~~p~------~-----------~~~~~~~~l~~~G 183 (211)
T 2abk_A 122 ANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVPA------E-----------FKVDCHHWLILHG 183 (211)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCC-SSHHHHHHHHHHHSCG------G-----------GTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCH------H-----------HHHHHHHHHHHHH
T ss_conf 99999997799737767899999999488889-9999999999985574------2-----------1999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCHHHHH
Q ss_conf 8543468998889998100043552
Q 002448 584 KVFCTKSKPNCNACPMRGECRHFAS 608 (921)
Q Consensus 584 R~iC~arkP~C~~CPLrdlC~~~~~ 608 (921)
|.+|++++|+|+.|||++.|+|+.+
T Consensus 184 ~~~C~~~~P~C~~Cpl~~~C~~~~~ 208 (211)
T 2abk_A 184 RYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp HHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred HHHCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 9977899999999999232788674
No 3
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=1.00 E-value=1 Score=312.85 Aligned_cols=220 Identities=22% Similarity=0.261 Sum_probs=182.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998676423788653478871233310135431013441012222322333444596899999985037644335769
Q 002448 350 RNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRM 429 (921)
Q Consensus 350 ~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~~~~ 429 (921)
.++.++|..+|+.....+. +....++|+.||+.||++|++...+. ..|.+|+..
T Consensus 14 ~~~~~~l~~w~~~~~r~lp-------w~~~~~p~~~lv~~il~qqt~~~~~~----~~~~~l~~~--------------- 67 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLP-------WRKDRDPYKVWVSEVMLQQTRVETVI----PYFEQFIDR--------------- 67 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCG-------GGSCCCHHHHHHHHHHTTTSCHHHHH----HHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHCCCCHHHHH----HHHHHHHHH---------------
T ss_conf 9999999999998389999-------99899869999999996507599999----999999997---------------
Q ss_pred CCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999719999999999822991899999999999998760997803431499457999987077766756999999
Q 002448 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRL 509 (921)
Q Consensus 430 ~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKTAdvILl 509 (921)
++||++|++++.++|.++|+++|||+ ||++|+++++.++++||| .+|.. +++|++|||||+|||++||+
T Consensus 68 -~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g-------~~p~~--~~~L~~l~GIG~~tA~~il~ 136 (369)
T 3fsp_A 68 -FPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGG-------KVPDD--PDEFSRLKGVGPYTVGAVLS 136 (369)
T ss_dssp -CCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTT-------CCCCS--HHHHHTSTTCCHHHHHHHHH
T ss_pred -CCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCCC-------CCHHH--HHHHHCCCCCCHHHHHHHHH
T ss_conf -77999997789999999998668499-999999999999998299-------98368--99985599867799999999
Q ss_pred HHCCCCEEECCHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8349913321238999998817889999----989999999974684477777542220027825289999999999385
Q 002448 510 LTLHHLAFPVDTNVGRIAVRLGWVPLQP----LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585 (921)
Q Consensus 510 falgrpaiPVDTHV~RIl~RLGlv~~k~----tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fGR~ 585 (921)
|+||+++|+||+||.|++.|+|+++... ++.+++..+..++|. ..+.++|++||.|||.
T Consensus 137 ~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~~~~~~l~~~G~~ 199 (369)
T 3fsp_A 137 LAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY-----------------ENPGAFNEALIELGAL 199 (369)
T ss_dssp HHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCS-----------------SSHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCH-----------------HHHHHHHHHHHHHHHH
T ss_conf 97799813333899999999727666755432499999999984794-----------------1399999999999887
Q ss_pred HCCCCCCCCCCCCCCHHCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 43468998889998100043552100001237897766643
Q 002448 586 FCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIV 626 (921)
Q Consensus 586 iC~arkP~C~~CPLrdlC~~~~~~~asar~alP~p~~~~~~ 626 (921)
+|++++|+|+.|||++.|+++..+ ....+|.+.+|...
T Consensus 200 ~C~~~~P~C~~Cpl~~~C~~~~~~---~~~~~PvK~~kk~~ 237 (369)
T 3fsp_A 200 VCTPRRPSCLLCPVQAYCQAFAEG---VAEELPVKMKKTAV 237 (369)
T ss_dssp TSCSSSCCTTTCTTGGGCHHHHHT---CGGGCSCCCCCCCC
T ss_pred HCCCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCCCCCC
T ss_conf 638999989888784444898669---86658865555676
No 4
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=309.57 Aligned_cols=217 Identities=15% Similarity=0.248 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 999999986764237886534788712-3331013543101344101222232233344459689999998503764433
Q 002448 347 EKTRNLGDDISVANKLSDNKLIEPNSV-EQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERS 425 (921)
Q Consensus 347 ~~~~~i~~rl~~~~~~p~~~l~~~~~~-~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~ 425 (921)
+....+.++|..+|..-...|...... .......++|+.||+.||++|++++.+.. .|.+|+..
T Consensus 13 ~~~~~~~~~ll~Wy~~~~R~lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~----~~~rL~~~----------- 77 (287)
T 3n5n_X 13 AEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVIN----YYTGWMQK----------- 77 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHH----HHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH-----------
T ss_conf 899999999999999749999885767655677799899999999967785999999----99999998-----------
Q ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHC-CCCCCHHHH
Q ss_conf 5769999999997199999999998229918999999999999987609978034314994579999870-777667569
Q 002448 426 RDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS-IRGLGLKSV 504 (921)
Q Consensus 426 ~~~~~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLs-LPGVGrKTA 504 (921)
++||++|++++.++|+++|+++|||+ ||++|++++++++++||| .+|.+ +++|++ |||||+|||
T Consensus 78 -----fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g-------~~p~~--~~~Ll~~LpGIG~kTA 142 (287)
T 3n5n_X 78 -----WPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGG-------HMPRT--AETLQQLLPGVGRYTA 142 (287)
T ss_dssp -----CCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTT-------CCCSS--HHHHHHHSTTCCHHHH
T ss_pred -----CCCHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHCC-------CCCHH--HHHHHHHCCCCCHHHH
T ss_conf -----78999998499999999999868799-999999999999998089-------97189--9999987679888999
Q ss_pred HHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999983499133212389999988178899999899999999----746844777775422200278252899999999
Q 002448 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL----ELYPVLESIQKYLWPRLCKLDQRTLYELHYQLI 580 (921)
Q Consensus 505 dvILlfalgrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~L~----~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI 580 (921)
++||+|+||+++|+||+||+||+.|+|++....++.++++.+. .++| ...+.+||++||
T Consensus 143 ~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp-----------------~~~~~~~h~~L~ 205 (287)
T 3n5n_X 143 GAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVD-----------------PARPGDFNQAAM 205 (287)
T ss_dssp HHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSC-----------------SSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-----------------HHHHHHHHHHHH
T ss_conf 999998527997602599999999947888999859999999999997489-----------------888999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHCHHHHHHC
Q ss_conf 993854346899888999810004355210
Q 002448 581 TFGKVFCTKSKPNCNACPMRGECRHFASAF 610 (921)
Q Consensus 581 ~fGR~iC~arkP~C~~CPLrdlC~~~~~~~ 610 (921)
.|||.+|++++|+|+.|||++.|+++.+..
T Consensus 206 ~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~ 235 (287)
T 3n5n_X 206 ELGATVCTPQRPLCSQCPVESLCRARQRVE 235 (287)
T ss_dssp HHHHHTSCSSSCCTTSCTTGGGCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 981997489999998897765538887165
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=1.00 E-value=1 Score=300.80 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=174.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 57499999999867642378865347887123331013543101344101222232233344459689999998503764
Q 002448 343 SMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQ 422 (921)
Q Consensus 343 ~~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~ 422 (921)
-|+.++...+.++|..++..-...+ + +....++|+.||+.|||+|++++.+++ .|.+|++.
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~--p-----w~~~~~pfe~lv~~IlsQqts~~~~~~----~~~~l~~~-------- 63 (221)
T 1kea_A 3 DATNKKRKVFVSTILTFWNTDRRDF--P-----WRHTRDPYVILITEILLRRTTAGHVKK----IYDKFFVK-------- 63 (221)
T ss_dssp CTHHHHHHHHHHHHHHHHHHSCCCC--G-----GGGCCCHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC--C-----CCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH--------
T ss_conf 3339999999999999999851237--6-----877899899999999976487999999----99999998--------
Q ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHH
Q ss_conf 43357699999999971999999999982299189999999999999876099780343149945799998707776675
Q 002448 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502 (921)
Q Consensus 423 er~~~~~~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrK 502 (921)
++||++|+++++++|.++|+++||+++||++|+++++.+++.|+| .+|.. +++|++|||||+|
T Consensus 64 --------fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~ 126 (221)
T 1kea_A 64 --------YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVPRN--RKAILDLPGVGKY 126 (221)
T ss_dssp --------CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT-------SCCSC--HHHHHTSTTCCHH
T ss_pred --------CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHHCCCCCHH
T ss_conf --------789999977899999999987799779999999999999998089-------96599--9999847997299
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHHH-CCCCCCCC--HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6999999834991332123899999881-78899999--89999999974684477777542220027825289999999
Q 002448 503 SVECVRLLTLHHLAFPVDTNVGRIAVRL-GWVPLQPL--PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQL 579 (921)
Q Consensus 503 TAdvILlfalgrpaiPVDTHV~RIl~RL-Glv~~k~t--peevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~L 579 (921)
||++||+|+|++++||||+||.|++.|+ ||...... ..++....+.++|. ..+.++|++|
T Consensus 127 TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~-----------------~~~~~~~~~l 189 (221)
T 1kea_A 127 TCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPG-----------------GKCRDFNLGL 189 (221)
T ss_dssp HHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCT-----------------TCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH-----------------HHHHHHHHHH
T ss_conf 99999998669980224499999999971887789827899999999986885-----------------2199999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHCHHHHHH
Q ss_conf 999385434689988899981000435521
Q 002448 580 ITFGKVFCTKSKPNCNACPMRGECRHFASA 609 (921)
Q Consensus 580 I~fGR~iC~arkP~C~~CPLrdlC~~~~~~ 609 (921)
|.|||.+|++++|+|+.|||++.|+++..+
T Consensus 190 v~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 190 MDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp HHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHCHHHHCC
T ss_conf 999899869999999989981316445317
No 6
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=1.00 E-value=1 Score=297.35 Aligned_cols=214 Identities=17% Similarity=0.228 Sum_probs=170.2
Q ss_pred HHHHHHHHCCCCCC-CCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99867642378865-34788712333101354310134410122223223334445968999999850376443357699
Q 002448 352 LGDDISVANKLSDN-KLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMD 430 (921)
Q Consensus 352 i~~rl~~~~~~p~~-~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~~~~~ 430 (921)
+.++|...+..... .+. +....++|+.||++|||+|+++..+.+ .|.+|+..
T Consensus 6 ~~~~l~~~~~~~g~~~l~-------w~~~~~pfe~lv~~IlsQqt~~~~v~~----~~~~l~~~---------------- 58 (225)
T 1kg2_A 6 FSAQVLDWYDKYGRKTLP-------WQIDKTPYKVWLSEVMLQQTQVATVIP----YFERFMAR---------------- 58 (225)
T ss_dssp HHHHHHHHHHHHCCCCSG-------GGSSCCHHHHHHHHHHHTSSCHHHHHH----HHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCCCCC-------CCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH----------------
T ss_conf 999999999985987899-------998899899999999977687999999----99999997----------------
Q ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999997199999999998229918999999999999987609978034314994579999870777667569999998
Q 002448 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (921)
Q Consensus 431 ~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKTAdvILlf 510 (921)
++||++|+++++++|+++|+++||+ +||++|+++++.++++|+| .+|.. +++|++|||||+|||++||+|
T Consensus 59 ~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 59 FPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGG-------KFPET--FEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp CSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHHHSTT-------SCCCS--HHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHCCCCCCHHHHHHHHHH
T ss_conf 8799999877999999999867809-9999999999999998389-------96489--999865899849999999999
Q ss_pred HCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHH----HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 34991332123899999881788999998999999----99746844777775422200278252899999999993854
Q 002448 511 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH----LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586 (921)
Q Consensus 511 algrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~----L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fGR~i 586 (921)
+||+++|+||+||.|++.|+|+.....++..+++. .+.++| .+.+.++|++||.|||.+
T Consensus 129 a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p-----------------~~~~~~~~~~lv~~G~~~ 191 (225)
T 1kg2_A 129 SLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTP-----------------AVGVERFNQAMMDLGAMI 191 (225)
T ss_dssp HHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCC-----------------STTHHHHHHHHHHHHHHT
T ss_pred HCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC-----------------CCCHHHHHHHHHHHHHHH
T ss_conf 579981126799999999974887777731039999999998789-----------------341999999999998887
Q ss_pred CCCCCCCCCCCCCCHHCHHHHHHCCCCCCCCCCCCC
Q ss_conf 346899888999810004355210000123789776
Q 002448 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEE 622 (921)
Q Consensus 587 C~arkP~C~~CPLrdlC~~~~~~~asar~alP~p~~ 622 (921)
|++++|+|+.|||++.|+++..+ ....+|.+..
T Consensus 192 C~~~~P~C~~Cpl~~~C~~~~~~---~~~~~p~~~~ 224 (225)
T 1kg2_A 192 CTRSKPKCSLCPLQNGCIAAANN---SWALYPGKKP 224 (225)
T ss_dssp SCSSSCCGGGCTTTTTCHHHHHT---CGGGSSCCCC
T ss_pred CCCCCCCCCCCCCHHHCHHHHCC---CCCCCCCCCC
T ss_conf 68999999999983437897759---9323789889
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=1.00 E-value=1 Score=250.38 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999867642-3788653478871233310135431013441012222322333444596899999985037644335
Q 002448 348 KTRNLGDDISVA-NKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSR 426 (921)
Q Consensus 348 ~~~~i~~rl~~~-~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~ 426 (921)
...+|+++|... |+.+...+-. ...++|+.||+.|||+|++++.+++ .|.+|+..
T Consensus 3 ~~~~i~~~L~~~~~~~~~~~~~~--------~~~dpfe~Lv~~ILsQqts~~~v~~----~~~~L~~~------------ 58 (218)
T 1pu6_A 3 DSFEILKALKSLDLLKNAPAWWW--------PNALKFEALLGAVLTQNTKFEAVLK----SLENLKNA------------ 58 (218)
T ss_dssp CHHHHHHHHHTTTTTTTSCTTSS--------TTTTSHHHHHHHHHTTTSCHHHHHH----HHHHHHHT------------
T ss_pred CHHHHHHHHHHCCCCCCCCCCCC--------CCCCHHHHHHHHHHCCCCCHHHHHH----HHHHHHHC------------
T ss_conf 48999999997047655887688--------8999899999999938887999999----99999970------------
Q ss_pred CCCCCCC------HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 7699999------9999719999999999822991899999999999998760997803431499457999987077766
Q 002448 427 DRMDSLD------YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500 (921)
Q Consensus 427 ~~~~~~t------pEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVG 500 (921)
++++ |++|++++.++|+++|+++||+++||++|+++++.+.++++++ +.+ +..+++++|++|||||
T Consensus 59 ---~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l--~~~---~~~~~~~~L~~lpGIG 130 (218)
T 1pu6_A 59 ---FILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSF--ENF---KQEVTREWLLDQKGIG 130 (218)
T ss_dssp ---TSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSH--HHH---HHHCCHHHHHTSTTCC
T ss_pred ---CCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH--HHC---CCHHHHHHHHCCCCCC
T ss_conf ---49995433659999809999999999977993999999999999999854986--526---4357999997589927
Q ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 75699999983499133212389999988178899999899999999746----84477777542220027825289999
Q 002448 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY----PVLESIQKYLWPRLCKLDQRTLYELH 576 (921)
Q Consensus 501 rKTAdvILlfalgrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~L~~ll----P~lr~Iqk~lW~rl~~ld~e~~~elH 576 (921)
+|||++||+|+|++++||||+||.|++.|+||. .++|++++..+++.+ |.+-.+....|. +.+.++++|
T Consensus 131 ~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~-----~~~~~~~~h 203 (218)
T 1pu6_A 131 KESADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEKGVQENLNSALALYENTIS-----LAQLYARFH 203 (218)
T ss_dssp HHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC-----HHHHHHHHH
T ss_conf 999999999977999550179999999984999--9999999999997534307603210012334-----399999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999385
Q 002448 577 YQLITFGKV 585 (921)
Q Consensus 577 ~~LI~fGR~ 585 (921)
++||.|||.
T Consensus 204 ~liv~~Gk~ 212 (218)
T 1pu6_A 204 GKIVEFSKQ 212 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999998110
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=1.00 E-value=1 Score=208.33 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=121.1
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CCHH
Q ss_conf 35431013441012222322333444596899999985037644335769999999997199999999998229--9189
Q 002448 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNNM 457 (921)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~~~~~~~tpEaIa~A~~eELeelIr~iG--f~r~ 457 (921)
.++|++||++|||+|++|..++++ + .+|+ +.|+.+++++|+++|+++| ||++
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a--~--~~L~----------------------~~l~~~~~eeL~~~Ir~~G~rf~~~ 95 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRI--Q--KEIG----------------------DGFLTLPREELEEKLKNLGHRFYRK 95 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH--H--HHHT----------------------THHHHSCHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHH--H--HHHH----------------------HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 996999999998277889999999--9--9999----------------------9998799999999999972477999
Q ss_pred HHHHHHHHHH--HHHHHHCCCCHHHHHCC-CCHHHHHHHH-CCCCCCHHHHHHHHHHHCCCCEEE-CCHHHHHHHHHHCC
Q ss_conf 9999999999--99876099780343149-9457999987-077766756999999834991332-12389999988178
Q 002448 458 LAERMKDFLN--RLVREHGSIDLEWLRDV-PPDKAKDYLL-SIRGLGLKSVECVRLLTLHHLAFP-VDTNVGRIAVRLGW 532 (921)
Q Consensus 458 KAk~Ik~lAr--~Lve~yGgiDLe~L~~V-P~deareeLL-sLPGVGrKTAdvILlfalgrpaiP-VDTHV~RIl~RLGl 532 (921)
||++|+++++ .+.+.+++ + +..++|++|+ +|||||+|||++||+++ +.++|| ||+||.|+++||||
T Consensus 96 KA~~I~~~a~~~~l~~~~~~--------~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~ 166 (214)
T 3fhf_A 96 RAEYIVLARRFKNIKDIVES--------FENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNY 166 (214)
T ss_dssp HHHHHHHHGGGCCHHHHHHH--------SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHCCC
T ss_conf 99999999976689998636--------478579999999808998799999999974-998832071999999998489
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999899999999746844777775422200278252899999999993854346
Q 002448 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589 (921)
Q Consensus 533 v~~k~tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fGR~iC~a 589 (921)
++. .+ +. ++...+.++|..|+.||+.+|.+
T Consensus 167 ~~~--~~--------k~-----------------lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 167 IDE--IP--------KT-----------------LSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp SSS--CC--------SS-----------------CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCC--CC--------CC-----------------CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888--87--------76-----------------99999999999999999997979
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=201.89 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=127.7
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CCH
Q ss_conf 135431013441012222322333444596899999985037644335769999999997199999999998229--918
Q 002448 379 AHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNN 456 (921)
Q Consensus 379 ~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~~~~~~~tpEaIa~A~~eELeelIr~iG--f~r 456 (921)
..++|+.||+.|||+|+++..++++ |.+| +++|+.+++++|+++|+++| ||+
T Consensus 30 ~~~~fe~Lv~~ILsqqts~~~~~~~----~~~L----------------------~~~l~~~~~e~l~~~ir~~G~g~~~ 83 (207)
T 3fhg_A 30 EEVWFRELTLCLLTANSSFISAYQA----LNCL----------------------GQKIYYANEEEIRNILKSCKYRFYN 83 (207)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHH----HHHH----------------------GGGGGTCCHHHHHHHHHHTTCTTHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHH----HHHH----------------------HHHHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 6999999999997588879999999----9999----------------------8988759999999999880667479
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCEEECCHHHHHHHHHHCCCCC
Q ss_conf 999999999999987609978034314994579999870777667569999998-3499133212389999988178899
Q 002448 457 MLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL-TLHHLAFPVDTNVGRIAVRLGWVPL 535 (921)
Q Consensus 457 ~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKTAdvILlf-algrpaiPVDTHV~RIl~RLGlv~~ 535 (921)
+||++|+++++.+.+.+++ |++.+...++++++++|++|||||+|||++||+| ++ .++||||+||.|++.|+||++.
T Consensus 84 ~KA~~l~~~a~~~~~~~~~-~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~ 161 (207)
T 3fhg_A 84 LKAKYIIMAREKVYGRLKE-EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGE 161 (207)
T ss_dssp HHHHHHHHHHHHHTTTHHH-HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCEECHHHHHHHHHCCCCCC
T ss_conf 9999999999999987320-2998747999999999973898689999999998079-8803026999999998599875
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999999746844777775422200278252899999999993854346
Q 002448 536 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589 (921)
Q Consensus 536 k~tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fGR~iC~a 589 (921)
. .+. .++...+.++|..|+.||+.+|..
T Consensus 162 ~-------------~~k-------------~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 162 T-------------NVK-------------QLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp C-------------CCS-------------CCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred C-------------CCC-------------CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4-------------556-------------699999999999999999996979
No 10
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=201.26 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CCH
Q ss_conf 135431013441012222322333444596899999985037644335769999999997199999999998229--918
Q 002448 379 AHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNN 456 (921)
Q Consensus 379 ~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~er~~~~~~~~tpEaIa~A~~eELeelIr~iG--f~r 456 (921)
..++|++|+++|||+|+++..+++ +..+ . |++|+.++.++|+++|+++| |++
T Consensus 47 ~~~~fe~Lv~~ILsqqts~~~~~~-----------a~~~-------------L--p~~l~~~~~eeL~~~Ir~~G~Rf~~ 100 (219)
T 3n0u_A 47 EEDLFCELSFCVLTANWSAEGGIR-----------AQKE-------------I--GKGFVHLPLEELAEKLREVGHRYPQ 100 (219)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHH-----------HHHH-------------H--TTHHHHCCHHHHHHHHHHTTCSSHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHH-----------HHHH-------------H--HHHHHCCCHHHHHHHHHHHCCHHHH
T ss_conf 899899999999808887999999-----------9999-------------9--9999859999999999984443779
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHH-CCCCCCHHHHHHHHHHHCCC-CEEECCHHHHHHHHHHCCCC
Q ss_conf 99999999999998760997803431499457999987-07776675699999983499-13321238999998817889
Q 002448 457 MLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL-SIRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVRLGWVP 534 (921)
Q Consensus 457 ~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLL-sLPGVGrKTAdvILlfalgr-paiPVDTHV~RIl~RLGlv~ 534 (921)
+||+||+++++.+ | ++..+...+..+++++|+ +|||||+|||+|||++ +++ ++||||+||.|++.|+||++
T Consensus 101 ~KA~~I~~~a~~i----g--~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~ 173 (219)
T 3n0u_A 101 KRAEFIVENRKLL----G--KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQ 173 (219)
T ss_dssp HHHHHHHHHGGGT----T--THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHH----H--HHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEECHHHHHHHHHCCCCC
T ss_conf 9999999999999----9--99998669928999999980899789999999998-499995112699999999858977
Q ss_pred CC------CCHHHHHHHHHHH
Q ss_conf 99------9989999999974
Q 002448 535 LQ------PLPESLQLHLLEL 549 (921)
Q Consensus 535 ~k------~tpeevE~~L~~l 549 (921)
.. ..|.+++..+.++
T Consensus 174 ~~~k~~t~k~y~~ie~~~~~~ 194 (219)
T 3n0u_A 174 EIPKGWSKKRYLYVEEILRKV 194 (219)
T ss_dssp SCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 676768888999999999999
Done!