RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002448
(921 letters)
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 91.0 bits (225), Expect = 3e-21
Identities = 28/183 (15%), Positives = 69/183 (37%), Gaps = 12/183 (6%)
Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
+E++ K ++ K + D ++ + + +++E ++ G N A+R+ D
Sbjct: 44 FEAVLKSLEN--LKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 101
Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
++++ + + + +++LL +G+G +S + + VD
Sbjct: 102 NILKDF-----QSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFL 156
Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVF 586
+LG + LQ + E++ L + LY H +++ F K
Sbjct: 157 KKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQK 212
Query: 587 CTK 589
Sbjct: 213 LEL 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 56.1 bits (134), Expect = 2e-09
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 439 CANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRG 498
++E+ + I+ G+ A ++ L+ ++ +VP D+ + L+ + G
Sbjct: 67 AVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRDRDE--LMKLPG 117
Query: 499 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 558
+G K+ V + A VDT+V R++ RLG+ ++ L+++ P E
Sbjct: 118 VGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW--- 174
Query: 559 YLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
H+++I FG+ C P C +CP+ CR
Sbjct: 175 --------------SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREG 208
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 54.6 bits (130), Expect = 8e-09
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 27/171 (15%)
Query: 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS 495
A+ V+ + IK G+ N AE + L+ +H E + +
Sbjct: 63 AMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAAL---------EA 113
Query: 496 IRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 555
+ G+G K+ V VDT++ R+ R + P +
Sbjct: 114 LPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKN------------------ 155
Query: 556 IQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
+++ L + + H+ LI G+ C KP C +C + C +
Sbjct: 156 VEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYK 206
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 54.2 bits (129), Expect = 1e-08
Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 23/176 (13%)
Query: 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDY 492
L A + E+ G K G + +
Sbjct: 61 TVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETF----------EE 110
Query: 493 LLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 552
+ ++ G+G + + L+L +D NV R+ R V P + ++ L L
Sbjct: 111 VAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQ 170
Query: 553 LESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFAS 608
+ + ++ G + CT+SKP C+ CP++ C A+
Sbjct: 171 VTPAVGV-------------ERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAAN 213
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 51.7 bits (123), Expect = 5e-08
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 453 GMNNMLAERMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511
A + ++ E G + L+ LR+ ++A L + G+G + +C+ L+
Sbjct: 64 LGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMA 123
Query: 512 LHHL-AFPVDTNVGRIAVRL-GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 569
L A PVD ++ IA R W P + + L + + LW
Sbjct: 124 LDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGP---SPQTNKELGNFFRSLWGPYAGWAA 180
Query: 570 RTLY 573
L+
Sbjct: 181 AVLF 184
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 49.6 bits (117), Expect = 5e-07
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 18/186 (9%)
Query: 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLR 482
E + + + E + + L+ V+E +
Sbjct: 44 ETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEV-----KTRY 98
Query: 483 DVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 542
D ++G+G +V V L V+ NV R+ RL V
Sbjct: 99 GGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKC-- 156
Query: 543 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGE 602
+ +++ + + LI G + CT +P+C CP++
Sbjct: 157 -----------STRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAY 205
Query: 603 CRHFAS 608
C+ FA
Sbjct: 206 CQAFAE 211
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon
Methanobacterium thermoformicicum [TaxId: 145262]}
Length = 217
Score = 48.4 bits (114), Expect = 1e-06
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 492 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 551
+L + G+G + V L A VD N R+ R Y
Sbjct: 114 AILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGS---------------YE 158
Query: 552 VLESIQKYLWPRLCKL-DQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHF 606
L K LW L + + L+ F + C KP C C M C ++
Sbjct: 159 NLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 214
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 30.3 bits (67), Expect = 1.1
Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 400 GEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCAN--VKEISEAIKERGMNNM 457
G++ + R R + +++++ D+ + R A +++ + + M
Sbjct: 23 GQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGM 82
Query: 458 LAERMKDFLNRLVREHG 474
+ + L R+
Sbjct: 83 TMIEICEKLEDCSRKLI 99
>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
{Pantoea stewartii subsp. stewartii [TaxId: 66271]}
Length = 210
Score = 29.6 bits (66), Expect = 1.2
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 734 LNPDAASIPAPKLKNVSRLRTEHQVY--ELPDSHPLLEGMDRREPDDPSPYLLAIWTPGE 791
+ + + + + +LR + + L +GM+ E D P + G+
Sbjct: 5 FDVSYEELQTTRSEELYKLR--KKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICEGQ 62
Query: 792 TANSIQL 798
S++
Sbjct: 63 LVCSVRF 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.384
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,327,895
Number of extensions: 156798
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 13
Length of query: 921
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 827
Effective length of database: 1,116,976
Effective search space: 923739152
Effective search space used: 923739152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)