BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002449
(920 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 289/904 (31%), Positives = 449/904 (49%), Gaps = 105/904 (11%)
Query: 51 PISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRV 110
P R G+ G+ I L N F++++ ++ YHY + + E + R++++ +
Sbjct: 27 PPPRPDFGTSGRTIKLQANFFEMDIPKID--IYHYELDIKPEKC----PRRVNREIVEHM 80
Query: 111 QETYNAELDG-KDFAYDGEKSLFTVGPLP--RNKLEFTVVLEDISSNRNNGNASPDAHGS 167
+ + ++ G + +DG K+L+T PLP R+K+E V L
Sbjct: 81 VQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPG----------------- 123
Query: 168 PNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHA 227
G DR FKV I + + + +QA+ +AL G+ E + LD+++R H
Sbjct: 124 -EGKDR----------IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMR-HL 171
Query: 228 AKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGP 287
V +SFF +GGG GFH S R + + LNIDVS T + P
Sbjct: 172 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 231
Query: 288 VVDFLIANQNVRDPFSID----------WAKAKRTLKNLRIKTITSNQ---EYKITGLSE 334
V++F+ V D SI+ K + +K L+++ Q +Y++ ++
Sbjct: 232 VIEFVC---EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTR 288
Query: 335 KLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTY 394
+ Q F L+Q++ Q +E TV YF + + LRY LPC+ VG+ ++ TY
Sbjct: 289 RPASHQTFPLQQES-------GQTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTY 340
Query: 395 IPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCG 454
+PLE+C +V+ QR K LT+ Q ++++ + + +R +S ++ + ++ +P +R G
Sbjct: 341 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFG 400
Query: 455 ISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS- 511
I + V GRVL P + +G N +P G W+ NK+ +I+ WA+ F+
Sbjct: 401 IMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAP 460
Query: 512 ----ARCDIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566
++S L K G+ I QP F + Q S VE MF +++
Sbjct: 461 QRQCTEVHLKSFTEQLRKISRDAGMPIQGQP--CFCKYAQGADS-----VEPMFRHLKNT 513
Query: 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA---PMRVNDQYLTNVLLKIN 623
G Q ++ +LP + + +Y KR G+ TQC+ R Q L+N+ LKIN
Sbjct: 514 YAGL-QLVVVILPGK--TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKIN 570
Query: 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISR 683
KLGG+N++L + P V + P I LG DV+H G PSIAAVV S +R
Sbjct: 571 VKLGGVNNILLPQGRPP---VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNR 626
Query: 684 YRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 743
Y A VR Q + E+I L ++RELL+ FY S+ + KP +II +RDGVSE
Sbjct: 627 YCATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEG 676
Query: 744 QFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFF------QSGSPDNVPPGT 797
QF QVL+ EL I EAC L++ + P IV QK HHT+ F + G N+P GT
Sbjct: 677 QFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGT 736
Query: 798 VVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRST 857
VD K+ HP +DFYLC+HAG+ GTSRP+HYHVL+D+ FSSDELQ L + L + Y R T
Sbjct: 737 TVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCT 796
Query: 858 TAISVVAPICYAHLAASQVGSFM--KFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCN 915
++S+ AP YAHL A + + K D +E S + G + + ++ +
Sbjct: 797 RSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLR 856
Query: 916 SMFF 919
+M+F
Sbjct: 857 TMYF 860
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 289/904 (31%), Positives = 449/904 (49%), Gaps = 105/904 (11%)
Query: 51 PISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRV 110
P R G+ G+ I L N F++++ ++ YHY + + E + R++++ +
Sbjct: 25 PPPRPDFGTSGRTIKLQANFFEMDIPKID--IYHYELDIKPEKC----PRRVNREIVEHM 78
Query: 111 QETYNAELDG-KDFAYDGEKSLFTVGPLP--RNKLEFTVVLEDISSNRNNGNASPDAHGS 167
+ + ++ G + +DG K+L+T PLP R+K+E V L
Sbjct: 79 VQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPG----------------- 121
Query: 168 PNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHA 227
G DR FKV I + + + +QA+ +AL G+ E + LD+++R H
Sbjct: 122 -EGKDR----------IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMR-HL 169
Query: 228 AKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGP 287
V +SFF +GGG GFH S R + + LNIDVS T + P
Sbjct: 170 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 229
Query: 288 VVDFLIANQNVRDPFSID----------WAKAKRTLKNLRIKTITSNQ---EYKITGLSE 334
V++F+ V D SI+ K + +K L+++ Q +Y++ ++
Sbjct: 230 VIEFVC---EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTR 286
Query: 335 KLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTY 394
+ Q F L+Q++ Q +E TV YF + + LRY LPC+ VG+ ++ TY
Sbjct: 287 RPASHQTFPLQQES-------GQTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTY 338
Query: 395 IPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCG 454
+PLE+C +V+ QR K LT+ Q ++++ + + +R +S ++ + ++ +P +R G
Sbjct: 339 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSADFNTDPYVREFG 398
Query: 455 ISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS- 511
I + V GRVL P + +G N +P G W+ NK+ +I+ WA+ F+
Sbjct: 399 IMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAP 458
Query: 512 ----ARCDIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566
++S L K G+ I QP F + Q S VE MF +++
Sbjct: 459 QRQCTEVHLKSFTEQLRKISRDAGMPIQGQP--CFCKYAQGADS-----VEPMFRHLKNT 511
Query: 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA---PMRVNDQYLTNVLLKIN 623
G Q ++ +LP + + +Y KR G+ TQC+ R Q L+N+ LKIN
Sbjct: 512 YAGL-QLVVVILPGK--TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKIN 568
Query: 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISR 683
KLGG+N++L + P V + P I LG DV+H G PSIAAVV S +R
Sbjct: 569 VKLGGVNNILLPQGRPP---VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNR 624
Query: 684 YRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSES 743
Y A VR Q + E+I L ++RELL+ FY S+ + KP +II +RDGVSE
Sbjct: 625 YCATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEG 674
Query: 744 QFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFF------QSGSPDNVPPGT 797
QF QVL+ EL I EAC L++ + P IV QK HHT+ F + G N+P GT
Sbjct: 675 QFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGT 734
Query: 798 VVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRST 857
VD K+ HP +DFYLC+HAG+ GTSRP+HYHVL+D+ FSSDELQ L + L + Y R T
Sbjct: 735 TVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCT 794
Query: 858 TAISVVAPICYAHLAASQVGSFM--KFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCN 915
++S+ AP YAHL A + + K D +E S + G + + ++ +
Sbjct: 795 RSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLR 854
Query: 916 SMFF 919
+M+F
Sbjct: 855 TMYF 858
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 200/430 (46%), Gaps = 58/430 (13%)
Query: 495 KLVQPT-KIERWAVVNFSARCDIRSLVRDLIKCGEM---KGILIDQPFDVFEESPQFRRS 550
K+ +P KIE+W + + + + E GI I+ F SP S
Sbjct: 6 KVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRF-----SPGMSMS 60
Query: 551 SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV 610
P EK F +L + QF++ LLP RK+ +Y KR FG+ T C +
Sbjct: 61 VP--GSEKEFFAKVKELMSSHQFVVVLLP-RKDVAIYNMVKRAADITFGVHTVCCVAEKF 117
Query: 611 NDQ-----YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGS---PG 662
Y NV LK+N K GG N + IP+++K T+++G DV+H + G
Sbjct: 118 LSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PIPLLAKGKTMVVGYDVTHPTNLAAG 173
Query: 663 HS--DIPSIAAVVSS--RHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELL 718
S PSI +VS+ +H + ++ A V E + F D+ R L
Sbjct: 174 QSPASAPSIVGLVSTIDQH---LGQWPAMVWNNPHGQESMTEQF------TDKFKTRLEL 224
Query: 719 LDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWS-PKFAVIVAQ 777
++ + PE I+IFRDGVSE QF V+ EL + ACK + P+ +IV+
Sbjct: 225 WRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSV 284
Query: 778 KNHHTKFF---------QSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHY 828
K H T+FF +S SP GTVVD V + R +DF+L AHA + GT+R HY
Sbjct: 285 KRHQTRFFPTDPKHIHFKSKSPKE---GTVVDRGVTNVRYWDFFLQAHASLQGTARSAHY 341
Query: 829 HVLFDEI------GFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK- 881
VL DEI ++D L++L H + Y++ R+T A+S+ P YA L + K
Sbjct: 342 TVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKE 401
Query: 882 -FDDLSETSS 890
FD L E S
Sbjct: 402 LFDALDENDS 411
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 163/682 (23%), Positives = 284/682 (41%), Gaps = 114/682 (16%)
Query: 329 ITGLSEKLCKEQMFSLKQKNVKDDDG---EVQELEITVYDYFVNNRNIDLRYSGDLPCIN 385
I G + + F++ + ++K + + + I DYF +I L+Y D+ +N
Sbjct: 387 IVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKYP-DMKLVN 445
Query: 386 VGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN----ALKL 441
+G + +P E +V Q+ + + + + ++ S +P E+ ++S A+K
Sbjct: 446 LGG--KNDVVPPECLTIVPGQKLKGQIFDTK--TYIDFSAIRPTEKFDLISRLSMPAIKR 501
Query: 442 SKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGN----------GEDFSPRNGRWNF 491
D+E S + + F +V R+L AP ++F G G WN
Sbjct: 502 GLTDSEKEESSAPHNSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNM 561
Query: 492 --------------------NNKKLVQPTKIERWAVVNFSA-RCDIRSLVRDLIKCGEMK 530
NN P +E ++ D++ L D G K
Sbjct: 562 KGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSG--K 619
Query: 531 GILIDQ---PFDVFEES-----------------------PQFRRSSPVVRVEKMFDEIQ 564
ILI+Q P F+ P F S + + + + I
Sbjct: 620 PILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENIP 679
Query: 565 SKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA--PMRVND-QYLTNVLLK 621
S ++L +L +S +Y K FG + C+ + N QY +NV++K
Sbjct: 680 SN-----TYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMK 734
Query: 622 INAKLGGLNSLLAVEHSPS-IPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPL 680
+N KL G N L++E++ I S +P ++LG DV+H D SIA++V S
Sbjct: 735 MNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYP--EKDQNSIASLVGSYDDKF 792
Query: 681 ISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGV 740
+ P E+I T ++ L + + + P +I+ FRDGV
Sbjct: 793 TQFPGDYMLQDGPGEEII---------TNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGV 843
Query: 741 SESQFNQVLNVELNQIIEACKFLD------EKWSPKFAVIVAQKNHHTKFF--------Q 786
S QF+QV+ +E+ I E+ + K+ P I K + +F +
Sbjct: 844 SVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNE 903
Query: 787 SG------SPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSD 840
G S NV PGTVVD + ++DF++ +H + GT P HY L+DE +SD
Sbjct: 904 KGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSD 963
Query: 841 ELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK--FD-DLSETSSSQGGMTS 897
LQE+ ++L Y++ RSTT++ V AP+ YA L ++ F K F+ ++++ +G
Sbjct: 964 YLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQ 1023
Query: 898 AGPVPVPQLPRLQEKVCNSMFF 919
LP++ + + + M++
Sbjct: 1024 PTVSKNVLLPQVNDNIKSVMYY 1045
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 173/421 (41%), Gaps = 89/421 (21%)
Query: 495 KLVQPT-KIERWAVVNFSARCDIRSLVRDLIKCGEM---KGILIDQPFDVFEESPQFRRS 550
K+ +P KIE+W + + + + E GI I+ F SP S
Sbjct: 6 KVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRF-----SPGMSMS 60
Query: 551 SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV 610
P EK F +L + QF++ LLP RK+ +Y KR FG+ T C +
Sbjct: 61 VP--GSEKEFFAKVKELMSSHQFVVVLLP-RKDVAIYNMVKRAADITFGVHTVCCVAEKF 117
Query: 611 NDQ-----YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGS---PG 662
Y NV LK+N K GG N + IP+++K T+++G DV+H + G
Sbjct: 118 LSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PIPLLAKGKTMVVGYDVTHPTNLAAG 173
Query: 663 HS--DIPSIAAVVSS--RHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELL 718
S PSI +VS+ +H + ++ A V E + F D+ R L
Sbjct: 174 QSPASAPSIVGLVSTIDQH---LGQWPAMVWNNPHGQESMTEQFT------DKFKTRLEL 224
Query: 719 LDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWS-PKFAVIVAQ 777
++ + PE I+IFRDGVSE QF V+ EL + ACK + P+ +IV+
Sbjct: 225 WRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSV 284
Query: 778 KNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEI-- 835
K SGS HY VL DEI
Sbjct: 285 KG-------SGS------------------------------------AHYTVLVDEIFR 301
Query: 836 ----GFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK--FDDLSETS 889
++D L++L H + Y++ R+T A+S+ P YA L + K FD L E
Sbjct: 302 ADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDEND 361
Query: 890 S 890
S
Sbjct: 362 S 362
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz
Domain
Length = 169
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 280 TMIIQPGPVVDFLIANQNVRD------PFSIDWAKAKRT--LKNLRIKTITSNQ---EYK 328
T + PV+DF+ ++RD P + D + K T +K L+I+ Q +Y+
Sbjct: 2 TAFYKAQPVIDFMCEVLDIRDINEQRKPLT-DSQRVKFTKEIKGLKIEITHCGQMRRKYR 60
Query: 329 ITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388
+ ++ + + Q F L+ +N Q +E TV YF++ + LRY LPC+ VG+
Sbjct: 61 VCNVTRRPAQMQSFPLQLENG-------QTVECTVAKYFLDKYRMKLRYP-HLPCLQVGQ 112
Query: 389 PKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYD 445
+ TY+PLE+C +V+ QR K LT++Q +++++ + + +R ++N +K + ++
Sbjct: 113 EHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFN 169
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 492 NNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFR-RS 550
++KK+V K+ W V+FS R D R L ++ C ++ G+ + + + F+ P S
Sbjct: 1 SDKKMVNGAKVTSWTCVSFSTRID-RGLPQEF--CKQLIGMCVSKGME-FKPQPAIPFIS 56
Query: 551 SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV 610
P +E+ +I + PG Q L+ +LP+ S YG KR + GIV+QC P +V
Sbjct: 57 CPPEHIEEALLDIHKRAPGL-QLLIVILPDVTGS--YGKIKRICETELGIVSQCCQPRQV 113
Query: 611 ND---QYLTNVLLKINAKLGGLNSLL 633
N QY+ NV LKIN K GG N++L
Sbjct: 114 NKLNKQYMENVALKINVKTGGRNTVL 139
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 493 NKKLVQPTKIERWAVVNFSARCD---IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRR 549
NKK++ + W +NFS + R+ ++L + + G+ + P V P R
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFN-PEPVL--PPVSAR 58
Query: 550 SSPVVRVEKM-FDEIQSKLPGAPQ--FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606
V +V K + + SKL + L+ +LP++KNSDLYG KR + GIV+QC
Sbjct: 59 PEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCL 118
Query: 607 P---MRVNDQYLTNVLLKINAKLGGLNSLLA 634
+++ QY+ NV LKIN K+GG N++L
Sbjct: 119 TKHVFKMSKQYMANVALKINVKVGGRNTVLV 149
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex Of
Deoxynucleotide Overhang
Length = 149
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Query: 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQ---EYKITGLSEKLCKEQ 340
QP P+ D +Q VR + +K L+++ Q +Y++ ++ + Q
Sbjct: 24 QPKPLTD----SQRVR---------FTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQ 70
Query: 341 MFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELC 400
F L+ ++ Q +E TV YF N+ L+Y LPC+ VG+ ++ TY+PLE+C
Sbjct: 71 TFPLQLESG-------QTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVC 122
Query: 401 ELVSLQRYTKALTNLQRASLVEKS 424
+V+ QR K LT+ Q +++++ +
Sbjct: 123 NIVAGQRCIKKLTDNQTSTMIKAT 146
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex
Length = 149
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 24/144 (16%)
Query: 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQ---EYKITGLSEKLCKEQ 340
QP P+ D +Q VR F+ + +K L+++ Q +Y++ ++ + Q
Sbjct: 24 QPKPLTD----SQRVR--FT-------KEIKGLKVEVTHCGQXKRKYRVCNVTRRPASHQ 70
Query: 341 MFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELC 400
F L+ + G Q +E TV YF N+ L+Y LPC+ VG+ ++ TY+PLE+C
Sbjct: 71 TFPLQL-----ESG--QTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVC 122
Query: 401 ELVSLQRYTKALTNLQRASLVEKS 424
+V+ QR K LT+ Q ++ ++ +
Sbjct: 123 NIVAGQRCIKKLTDNQTSTXIKAT 146
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 493 NKKLVQPTKIERWAVVNFSARCD---IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRR 549
NKK++ + W +NFS + R+ ++L + + G+ + P V P R
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFN-PEPVL--PPVSAR 58
Query: 550 SSPVVRVEKM-FDEIQSKLPGAPQ--FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606
V +V K + + SKL + L+ +LP+ N LYG KR + GIV+QC
Sbjct: 59 PEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDN-NGSLYGDLKRICETELGIVSQCCL 117
Query: 607 P---MRVNDQYLTNVLLKINAKLGGLNSLL 633
+++ QY+ NV LKIN K+GG N++L
Sbjct: 118 TKHVFKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 493 NKKLVQPTKIERWAVVNFSARCD---IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRR 549
NKK++ + W +NFS + R+ ++L + + G+ + P V P R
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFN-PEPVL--PPVSAR 58
Query: 550 SSPVVRVEKM-FDEIQSKLPGAPQ--FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606
V +V K + + SKL + L+ +LP+ N LYG KR + GIV+QC
Sbjct: 59 PEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDN-NGSLYGDLKRICETELGIVSQCCL 117
Query: 607 P---MRVNDQYLTNVLLKINAKLGGLNSLLA 634
+++ QY+ NV LKIN K+GG N++L
Sbjct: 118 TKHVFKMSKQYMANVALKINVKVGGRNTVLV 148
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 493 NKKLVQPTKIERWAVVNFSARCD---IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRR 549
NKK + + W +NFS + R+ ++L + + G + P V P R
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFN-PEPVL--PPVSAR 58
Query: 550 SSPVVRVEKM-FDEIQSKLPGAPQ--FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606
V +V K + + SKL + L+ +LP+ N LYG KR + GIV+QC
Sbjct: 59 PEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDN-NGSLYGDLKRICETELGIVSQCCL 117
Query: 607 PMRV---NDQYLTNVLLKINAKLGGLNSLL 633
V + QY NV LKIN K+GG N++L
Sbjct: 118 TKHVFKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 494 KKLVQPTKIERWAVVNFSARCDIRSLVRDLI-----KCGEMKGILIDQPFDVFEESPQFR 548
K + + + ++ WAV++F+A + D + +C + G+ ++ P + ++ +
Sbjct: 3 KGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRL-GMQMEAP--IVYKTSRME 59
Query: 549 RSSPVVRVEKMF----DEIQSKLPGA-PQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQ 603
S +E++ DE K GA P +LC + + D Y K G+VTQ
Sbjct: 60 TLSNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRK--DDGYKTLKWIAETKLGLVTQ 117
Query: 604 CMA---PMRVNDQYLTNVLLKINAKLGGLN 630
C + DQY N+ LK+NAK+GG N
Sbjct: 118 CFLTGPATKGGDQYRANLALKMNAKVGGSN 147
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 492 NNKKLVQPTKIERWAVVNFS-----ARCDIRSLVRDLIKCGEMKGILID-QPFDVFEESP 545
+NK+ +I+ WA+ F+ ++S L K G+ I QP F +
Sbjct: 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP--CFCKYA 58
Query: 546 QFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCM 605
Q S VE MF +++ G Q ++ +LP + + +Y KR G+ TQC+
Sbjct: 59 QGADS-----VEPMFRHLKNTYAGL-QLVVVILPGK--TPVYAEVKRVGDTVLGMATQCV 110
Query: 606 A---PMRVNDQYLTNVLLKINAKLGGLN 630
R Q L+N+ LKIN KLGG+N
Sbjct: 111 QMKNVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 495 KLVQPT-KIERWAVVNFSARCDIRSLVRDLIKCGEM---KGILIDQPFDVFEESPQFRRS 550
K+ +P KIE+W + + + + E GI I+ F SP S
Sbjct: 6 KVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRF-----SPGMSMS 60
Query: 551 SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV 610
P EK F +L + QF++ LLP RK+ +Y KR FG+ T C +
Sbjct: 61 VP--GSEKEFFAKVKELMSSHQFVVVLLP-RKDVAIYNMVKRAADITFGVHTVCCVAEKF 117
Query: 611 NDQ-----YLTNVLLKINAKLGGLN 630
Y NV LK+N K GG N
Sbjct: 118 LSTKGQLGYFANVGLKVNLKFGGTN 142
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 492 NNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQ 546
+NK+ +I+ WA+ F+ + ++S L K G I + P
Sbjct: 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPI-------QGQPC 53
Query: 547 F-RRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCM 605
F + + VE F +++ G Q ++ +LP + + +Y KR G TQC+
Sbjct: 54 FCKYAQGADSVEPXFRHLKNTYAGL-QLVVVILPGK--TPVYAEVKRVGDTVLGXATQCV 110
Query: 606 AP---MRVNDQYLTNVLLKINAKLGGLN 630
R Q L+N+ LKIN KLGG+N
Sbjct: 111 QXKNVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|1VYN|A Chain A, Structure And Nucleic Acid Binding Of The Drosophila
Argonaute2 Paz Domain
Length = 143
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 327 YKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386
Y++ GLS + F + DG+ ++T+ YF ++RN L++ L C+NV
Sbjct: 57 YRVNGLSRAPASSETF--------EHDGK----KVTIASYF-HSRNYPLKFP-QLHCLNV 102
Query: 387 GKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVE 422
G + +P+ELC + Q + Q A++++
Sbjct: 103 GSSIKSILLPIELCSIEEGQALNRKDGATQVANMIK 138
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
pdb|1T2S|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
Length = 123
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 327 YKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386
Y++ GLS + F + DG+ ++T+ YF ++RN L++ L C+NV
Sbjct: 57 YRVNGLSRAPASSETF--------EHDGK----KVTIASYF-HSRNYPLKFP-QLHCLNV 102
Query: 387 GKPKRPTYIPLELCEL 402
G + +P+ELC +
Sbjct: 103 GSSIKSILLPIELCSI 118
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex
With 3'-End 2'-O-Methylated Rna
Length = 124
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 327 YKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386
Y++ GLS + F + DG+ ++T+ YF ++RN L++ L C+NV
Sbjct: 55 YRVNGLSRAPASSETF--------EHDGK----KVTIASYF-HSRNYPLKFP-QLHCLNV 100
Query: 387 GKPKRPTYIPLELCEL 402
G + +P+ELC +
Sbjct: 101 GSSIKSILLPIELCSI 116
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 327 YKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386
Y++ GLS + F + DG+ ++T+ YF ++RN L++ L C+NV
Sbjct: 437 YRVNGLSRAPASSETF--------EHDGK----KVTIASYF-HSRNYPLKFP-QLHCLNV 482
Query: 387 GKPKRPTYIPLELCEL 402
G + +P+ELC +
Sbjct: 483 GSSIKSILLPIELCSI 498
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEG 80
+ + + +GLG+R +R +LL + KV N+EG
Sbjct: 114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 365 DYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTN----LQRASL 420
D F+N N+D YS D P + K P +L E+VS + KA TN L A +
Sbjct: 130 DVFINATNVDGVYSAD-PKSDTSAVKYDRLSPQQLVEIVS-RSSAKAGTNVVIDLLAAKI 187
Query: 421 VEKSRQKPQERMSVLSNALKLSK 443
+E+S+ K + N +K K
Sbjct: 188 IERSKIKTYVILGTPENIMKAVK 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,114,933
Number of Sequences: 62578
Number of extensions: 1147593
Number of successful extensions: 2344
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2282
Number of HSP's gapped (non-prelim): 30
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)