Query 002449
Match_columns 920
No_of_seqs 264 out of 1117
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 2E-185 4E-190 1690.3 92.8 898 19-920 2-900 (900)
2 KOG1041 Translation initiation 100.0 1E-148 3E-153 1352.2 74.0 806 48-920 42-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 3E-128 6E-133 1064.1 48.4 714 56-881 87-831 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1.9E-99 4E-104 870.1 41.8 407 448-880 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 6.5E-94 1.4E-98 832.1 45.7 433 417-878 3-448 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 2.3E-85 4.9E-90 747.3 40.5 380 461-878 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.6E-70 3.5E-75 607.0 26.5 293 573-881 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 7.8E-46 1.7E-50 424.9 26.9 286 555-878 95-402 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 1.5E-22 3.3E-27 196.8 11.0 130 286-427 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 8.6E-19 1.9E-23 165.4 11.7 107 286-403 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 1.1E-18 2.4E-23 164.5 10.6 106 285-403 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 4.2E-18 9.1E-23 160.1 8.7 106 287-405 3-116 (117)
13 PF08699 DUF1785: Domain of un 99.5 5.2E-15 1.1E-19 117.7 3.9 51 234-285 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 4.1E-13 8.9E-18 129.0 6.4 84 309-404 27-133 (135)
15 COG1431 Argonaute homolog, imp 99.1 2.5E-09 5.4E-14 120.3 19.2 344 469-881 307-671 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.4 3.7E-07 8E-12 84.9 5.7 63 311-387 39-105 (122)
17 PF13032 DUF3893: Domain of un 90.6 0.58 1.3E-05 45.6 6.1 55 822-880 66-120 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 85.6 5.4 0.00012 39.7 9.4 108 646-783 9-120 (155)
19 PRK11617 endonuclease V; Provi 80.5 51 0.0011 34.9 14.6 39 835-880 179-217 (224)
20 TIGR00194 uvrC excinuclease AB 75.0 20 0.00043 43.5 11.1 110 649-788 382-498 (574)
21 PRK14672 uvrC excinuclease ABC 66.8 45 0.00097 41.0 11.5 110 646-786 452-564 (691)
22 PRK12306 uvrC excinuclease ABC 62.1 63 0.0014 38.7 11.5 107 647-786 365-475 (519)
23 PF00763 THF_DHG_CYH: Tetrahyd 60.2 18 0.0004 34.1 5.4 69 556-625 16-85 (117)
24 PRK14671 uvrC excinuclease ABC 59.9 66 0.0014 39.5 11.4 108 647-787 414-525 (621)
25 PRK14670 uvrC excinuclease ABC 59.6 84 0.0018 38.1 12.1 108 647-782 357-468 (574)
26 cd06559 Endonuclease_V Endonuc 56.2 63 0.0014 33.8 9.1 33 835-874 175-207 (208)
27 PRK14185 bifunctional 5,10-met 56.1 29 0.00063 38.3 6.8 69 556-624 17-86 (293)
28 PRK14667 uvrC excinuclease ABC 55.6 80 0.0017 38.3 11.0 107 647-786 360-470 (567)
29 PRK14171 bifunctional 5,10-met 54.5 40 0.00087 37.1 7.5 68 557-624 19-87 (288)
30 PRK14184 bifunctional 5,10-met 52.6 43 0.00092 36.9 7.4 69 556-624 17-86 (286)
31 PRK14669 uvrC excinuclease ABC 51.1 1.1E+02 0.0023 37.7 11.2 109 647-787 395-507 (624)
32 PRK14176 bifunctional 5,10-met 49.5 59 0.0013 35.8 7.9 67 559-625 27-94 (287)
33 PRK14187 bifunctional 5,10-met 49.4 55 0.0012 36.2 7.6 68 558-625 20-88 (294)
34 PRK14183 bifunctional 5,10-met 48.5 50 0.0011 36.2 7.1 56 569-624 30-86 (281)
35 KOG1924 RhoA GTPase effector D 48.2 33 0.00071 41.9 5.9 9 359-367 859-867 (1102)
36 PRK14186 bifunctional 5,10-met 47.4 54 0.0012 36.3 7.2 68 558-625 20-88 (297)
37 PLN02897 tetrahydrofolate dehy 47.2 52 0.0011 37.1 7.1 65 560-624 76-141 (345)
38 PRK14177 bifunctional 5,10-met 46.6 59 0.0013 35.7 7.3 68 557-624 20-88 (284)
39 PRK10792 bifunctional 5,10-met 46.5 51 0.0011 36.2 6.8 70 556-625 19-89 (285)
40 PLN02616 tetrahydrofolate dehy 46.0 62 0.0013 36.7 7.5 66 559-624 92-158 (364)
41 PRK14192 bifunctional 5,10-met 45.7 56 0.0012 36.0 7.1 77 557-633 20-99 (283)
42 PRK14174 bifunctional 5,10-met 45.7 59 0.0013 36.0 7.2 68 558-625 19-87 (295)
43 PLN02516 methylenetetrahydrofo 45.5 66 0.0014 35.6 7.5 66 560-625 29-95 (299)
44 PRK14188 bifunctional 5,10-met 44.6 68 0.0015 35.6 7.5 69 557-625 19-88 (296)
45 PRK14168 bifunctional 5,10-met 44.3 58 0.0013 36.0 6.9 69 556-624 19-88 (297)
46 PRK14169 bifunctional 5,10-met 43.8 65 0.0014 35.4 7.1 67 557-624 18-85 (282)
47 PRK14180 bifunctional 5,10-met 43.6 65 0.0014 35.4 7.1 67 558-624 19-86 (282)
48 PRK00558 uvrC excinuclease ABC 43.5 1.9E+02 0.0041 35.5 11.8 101 647-779 382-486 (598)
49 PRK14179 bifunctional 5,10-met 42.9 74 0.0016 35.0 7.4 69 557-625 19-88 (284)
50 PRK14166 bifunctional 5,10-met 41.7 67 0.0015 35.3 6.8 66 558-624 19-85 (282)
51 PRK14193 bifunctional 5,10-met 41.2 72 0.0016 35.1 6.9 57 569-625 31-88 (284)
52 PRK14194 bifunctional 5,10-met 41.1 75 0.0016 35.3 7.1 65 559-624 23-88 (301)
53 PRK14191 bifunctional 5,10-met 40.9 79 0.0017 34.8 7.2 69 557-625 18-87 (285)
54 PRK14666 uvrC excinuclease ABC 40.7 1.9E+02 0.0041 35.8 11.0 100 647-778 471-571 (694)
55 PRK14172 bifunctional 5,10-met 40.4 78 0.0017 34.7 7.1 70 556-625 18-88 (278)
56 PRK14190 bifunctional 5,10-met 40.4 74 0.0016 35.0 6.9 67 558-625 21-88 (284)
57 PRK14668 uvrC excinuclease ABC 36.6 2E+02 0.0044 35.0 10.5 99 648-780 375-479 (577)
58 PRK14173 bifunctional 5,10-met 36.1 93 0.002 34.3 6.8 57 569-625 28-85 (287)
59 PRK14170 bifunctional 5,10-met 35.2 97 0.0021 34.1 6.8 64 560-624 22-86 (284)
60 PRK14181 bifunctional 5,10-met 35.1 99 0.0022 34.1 6.8 56 569-624 25-81 (287)
61 COG0190 FolD 5,10-methylene-te 34.3 97 0.0021 33.9 6.5 67 558-624 18-85 (283)
62 PF02772 S-AdoMet_synt_M: S-ad 33.3 28 0.0006 33.1 1.9 30 851-880 12-41 (120)
63 PRK14182 bifunctional 5,10-met 33.3 1.1E+02 0.0023 33.7 6.7 65 559-624 20-85 (282)
64 PRK14167 bifunctional 5,10-met 33.3 1.1E+02 0.0024 33.8 6.9 65 560-625 22-87 (297)
65 PRK14178 bifunctional 5,10-met 33.2 1.3E+02 0.0027 33.1 7.3 58 568-625 24-82 (279)
66 PRK14189 bifunctional 5,10-met 32.9 1.3E+02 0.0028 33.2 7.3 65 559-624 22-87 (285)
67 COG0322 UvrC Nuclease subunit 32.8 3.1E+02 0.0068 33.4 11.1 107 647-786 378-486 (581)
68 PRK00766 hypothetical protein; 30.7 88 0.0019 32.4 5.2 37 835-878 152-188 (194)
69 PRK14175 bifunctional 5,10-met 30.3 1.3E+02 0.0028 33.2 6.7 55 570-624 32-87 (286)
70 KOG2488 Acetyltransferase (GNA 29.2 86 0.0019 32.2 4.7 43 68-114 107-149 (202)
71 KOG1924 RhoA GTPase effector D 28.0 97 0.0021 38.1 5.6 25 50-75 624-648 (1102)
72 COG0192 MetK S-adenosylmethion 24.5 43 0.00094 37.3 1.8 33 849-881 125-157 (388)
73 COG5178 PRP8 U5 snRNP spliceos 23.1 66 0.0014 41.0 3.1 37 15-63 2-38 (2365)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=2.1e-185 Score=1690.33 Aligned_cols=898 Identities=84% Similarity=1.341 Sum_probs=799.7
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccccccCCCCCCCCCCEEEEEeeEEEEEeccccceEEEEEeeeecCCCCCCC
Q 002449 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (920)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~i~L~tN~F~v~~~~~~~~~y~Y~V~i~~~~~~~v~ 98 (920)
+++||+||.+|+++++...+..+ ....+.+.+++|||||+.|++|.|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988876322 22455668899999999999999999999999766677899999999876556777
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCceeeeCCceeeecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccC
Q 002449 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (920)
Q Consensus 99 ~k~~~r~i~~~l~~~~~~~~~~~~~ayDG~k~L~s~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 178 (920)
+++++|+|+.++++++..++.+..+||||+++|||+++||.+..++.|+++++...++..+|+|+++++|.+++.+|.++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78899999999998876667777899999999999999998777888888764333333456676677777777666666
Q ss_pred CCCCCeEEEEEEEeeeecHHHHHHHhcCCCCcChHHHHHHHHHHHHhhhhhcCcccccccccCCCCCCcccCCCcEEEee
Q 002449 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (920)
Q Consensus 179 ~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~iq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~ 258 (920)
..+.+.|+|+|+++++|++.+|.+||.|....+..++||+||+|||+.++..++..+||+||.+......++++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77889999999999999999999999998777889999999999999998877888999999876555568999999999
Q ss_pred cceEEEEEeCCeeEEeEeccceeeecCchHHHHHHHhcCCCCCChhhHHHHHhhccceEEEeeecCceEEEeecCCcccc
Q 002449 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (920)
Q Consensus 259 Gf~~SvR~~~~gl~LNiDvs~~~F~k~~~l~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~~I~gl~~~~a~ 338 (920)
||++|||+++++|+||||+++++|+++++|+|+|.+..+.++....+|.+++++|+|++|.++|+++.|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999876655555557889999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCccceeeeHHHHHHHhcCccccCCC-CCCeEecCCCCCCceecccceEEccCccccccCCHHHH
Q 002449 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR 417 (920)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~iTV~~YF~~~Y~i~L~~~p-~lP~v~vg~~~r~~ylP~Elc~i~~~Q~~~k~Ls~~q~ 417 (920)
+.+|.++.+++ ...++.+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|||+++++|++.|+
T Consensus 321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~ 397 (900)
T PLN03202 321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR 397 (900)
T ss_pred ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence 99998765331 00122246899999999999999999 6 99999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhccCCCcccccceeeEeecCceeeeeeecCCCceecCCCcccCCCCCccccCCceee
Q 002449 418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497 (920)
Q Consensus 418 ~~mik~~~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~i~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~ 497 (920)
++||++|+.+|.+|.+.|.++++.++++.+++|++|||+|+.+|++|+||+|+||+|.||+++.+.|++|+||+++++|+
T Consensus 398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~ 477 (900)
T PLN03202 398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477 (900)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence 99999999999999999999999999988999999999999999999999999999999987767788999999999999
Q ss_pred cccccceEEEEEeCCchhHHHHHHHHHHHHhhcCccccCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEE
Q 002449 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL 577 (920)
Q Consensus 498 ~p~~i~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~i 577 (920)
+|+.+++|+|++|..++++++|++.|.+.|+.+||.+..|..+...++++.......+++.+++.++++++..++|+|||
T Consensus 478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI 557 (900)
T PLN03202 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI 557 (900)
T ss_pred CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999998767899999999999999999999886554444333323345679999999998876679999999
Q ss_pred cCCCCCCCchhhHHHHhhcccCceeeEeeccccchhHHHHHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEee
Q 002449 578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS 657 (920)
Q Consensus 578 lp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~~q~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVs 657 (920)
||++++.++|+.||++||++.||+||||..++.++||+.|||||||+||||+||.|..+....+|++.+.+|||||+||+
T Consensus 558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt 637 (900)
T PLN03202 558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS 637 (900)
T ss_pred EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence 99745789999999999999999999998777899999999999999999999999876555678888889999999999
Q ss_pred cCCCCCCCCCeEEEEEEecCCCccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhCCCCCceEEEec
Q 002449 658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737 (920)
Q Consensus 658 H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyR 737 (920)
||++|+.+.|||||+|||+|++.+++|++.+++|.+++|+|++|+....++.+++|+.++|+.||+.+++.+|++|||||
T Consensus 638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyR 717 (900)
T PLN03202 638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717 (900)
T ss_pred cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEe
Confidence 99998756799999999999877999999999999999999998765555557889999999999987789999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecCCCCCCCCCcceeecccccCccccEEeeecc
Q 002449 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHA 817 (920)
Q Consensus 738 DGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTVVD~~It~p~~~dFyL~sh~ 817 (920)
||||||||.+|+++|+++|++||+.++++|+|+||||||+||||||||+.+..+||+||||||++||||..||||||||+
T Consensus 718 DGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~ 797 (900)
T PLN03202 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHA 797 (900)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEeccc
Confidence 99999999999999999999999999989999999999999999999998777999999999999999999999999999
Q ss_pred CCCccccCceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcccccccCCCCCcccCCCCCC
Q 002449 818 GMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTS 897 (920)
Q Consensus 818 ~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~~~~~~~~~~s~~~~~~~ 897 (920)
++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||+||+|||+||++++.++++++++++++
T Consensus 798 ~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~ 877 (900)
T PLN03202 798 GMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITS 877 (900)
T ss_pred ccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997765555555555555
Q ss_pred CCCCCCCCCchhhhccCCCeeeC
Q 002449 898 AGPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~M~~~ 920 (920)
.++.+...+++||++++++||||
T Consensus 878 ~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 878 AGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred CCccccccccccchhhcCCeeeC
Confidence 56666678889999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-148 Score=1352.18 Aligned_cols=806 Identities=40% Similarity=0.632 Sum_probs=694.6
Q ss_pred cccccCCCCCCCCCCEEEEEeeEEEEEeccccce-EEEEEeeeecCCCCCCCCchhHH-HHHHHHHHHH-hhhcCCCcee
Q 002449 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGH-FYHYSVSVSYEDGRPVDGKGAGR-KVIDRVQETY-NAELDGKDFA 124 (920)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~F~v~~~~~~~~-~y~Y~V~i~~~~~~~v~~k~~~r-~i~~~l~~~~-~~~~~~~~~a 124 (920)
...++.|||.|+.|+.|.|.+|||.++++.++.. ++||+|.+.++ ..++..++ .+++.+.... ...+.+..++
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNE----HGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCC----CCchHHHHHHHHHHHHhccccccccCCccc
Confidence 4688899999999999999999999988766666 99999999654 33445553 4554444433 2346667778
Q ss_pred eeCCceeeecCCCCC--CcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCCeEEEEEEEeeeecHHHHHH
Q 002449 125 YDGEKSLFTVGPLPR--NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIAN 202 (920)
Q Consensus 125 yDG~k~L~s~~~Lp~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~ 202 (920)
|||+++|||..+|+. ...+|.+..+.. ...|++.|++++.+.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999888884 334444443321 112999999999999999998
Q ss_pred HhcCCCCcChHHHHHHHHHHHHhhhhhcCcccccccccCCCCCCcccCCCcEEEeecceEEEEEeCCeeEEeEeccceee
Q 002449 203 ALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 282 (920)
Q Consensus 203 ~l~g~~~~~~~~~iq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~Gf~~SvR~~~~gl~LNiDvs~~~F 282 (920)
++.+.......+++|+||++|++.+..+++..++++||.........+++|.|+|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 88888777889999999999999999888999999999974444445899999999999999999999999999999999
Q ss_pred ecCchHHHHHHHhcCCCC-CChhhHH-HHHhhccceEEEeee--cCceEEEeecCCccccccccccccCCCCCCCCCccc
Q 002449 283 IQPGPVVDFLIANQNVRD-PFSIDWA-KAKRTLKNLRIKTIT--SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (920)
Q Consensus 283 ~k~~~l~d~l~~~~~~~~-~~~~d~~-~~~~~Lkgl~V~~~~--~~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~ 358 (920)
+++.+|++++........ +...+|. .+++.||||+|.++| .+|.|+|.+++..+|.+++|+++..+ +
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~---------~ 318 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK---------G 318 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC---------c
Confidence 999999999998765542 3222332 389999999999999 45899999999999999999976531 3
Q ss_pred eeeeHHHHHHHhcCccccCCCCCCeEecCCCCCCceecccceEEccCccccc-cCCHHHHHHHHHHhcCChHHHHHHHHH
Q 002449 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK-ALTNLQRASLVEKSRQKPQERMSVLSN 437 (920)
Q Consensus 359 ~~iTV~~YF~~~Y~i~L~~~p~lP~v~vg~~~r~~ylP~Elc~i~~~Q~~~k-~Ls~~q~~~mik~~~~~P~eR~~~i~~ 437 (920)
.++||+|||+++||++|+| |+||||++|+.++.+|+|||||.|++|||+.+ +|++.|+++|++.+++.|++|++.|..
T Consensus 319 ~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~ 397 (876)
T KOG1041|consen 319 REITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKK 397 (876)
T ss_pred eEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhccCCCcccccceeeEeecCceeeeeeecCCCceecCCC-cccCCCCCccccCCceeecccccceEEEEEeCCchhH
Q 002449 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDI 516 (920)
Q Consensus 438 ~~~~~~~~~~~~L~~~Gi~i~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~~~~~~~~ 516 (920)
+++..++..+++|++|||+|.++|+.|+||+|+||.|.|+++ ....|.+|.|++++++|+.|+.+..|+|++|.+.++.
T Consensus 398 ~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~ 477 (876)
T KOG1041|consen 398 VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETL 477 (876)
T ss_pred HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccc
Confidence 999999988999999999999999999999999999999988 3466789999999999999999999999999877533
Q ss_pred --HHHHHHHHHHHhhcCccccCCcceeccCccccCCCchHHHHHHHHHHHhhCC--CCCeEEEEEcCCCCCCCchhhHHH
Q 002449 517 --RSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP--GAPQFLLCLLPERKNSDLYGPWKR 592 (920)
Q Consensus 517 --~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~--~~~~~vl~ilp~~~~~~~Y~~iK~ 592 (920)
+.|+++|++.|+..||.|..|. .+ . ..+.+++.++..++...+ ..+++++||+++ ++.++|+.||+
T Consensus 478 ~~~~f~~~L~~~c~~~Gm~i~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~ 547 (876)
T KOG1041|consen 478 RQKQFVDELIKICKDKGMEIKRPR-KW-A-------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKY 547 (876)
T ss_pred cHHHHHHHHHHHHHHcCccccccc-cc-C-------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHH
Confidence 6899999999999999997633 21 1 122567777777666543 458999999998 88999999999
Q ss_pred HhhcccCceeeEeecc---ccchhHHHHHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCC--CC
Q 002449 593 KNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD--IP 667 (920)
Q Consensus 593 ~~~~~~gI~TQci~~~---~~~~q~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~--~p 667 (920)
+++...||+|||+... +..+||++||+||||+||||+|+.+..+.....| ....+|||||+||+||++|... .|
T Consensus 548 ~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~P 626 (876)
T KOG1041|consen 548 IEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNP 626 (876)
T ss_pred HHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCc
Confidence 9999999999999975 4568999999999999999999988775544344 4568999999999999998765 59
Q ss_pred eEEEEEEecCCCccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhCCCCCceEEEeccCCChhHHHH
Q 002449 668 SIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ 747 (920)
Q Consensus 668 SiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsEgq~~~ 747 (920)
||||||+|+|| ..++|.+.+++|.+++|+|+++ ++|++++|.+|++.+ +.+|++|||||||||||||.+
T Consensus 627 Siagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~t-~~~P~~IIiyRdGvSEgqf~~ 695 (876)
T KOG1041|consen 627 SIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKST-RKLPDRIVIYRDGVSEGQFSM 695 (876)
T ss_pred cEEEEEecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHhc-cCCCceEEEEecCCccchHHH
Confidence 99999999999 8899999999999999999982 469999999998875 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecCCCC-------CCCCCcceeecccccCccccEEeeeccCCC
Q 002449 748 VLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP-------DNVPPGTVVDNKVCHPRNYDFYLCAHAGMI 820 (920)
Q Consensus 748 V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~-------~N~~pGTVVD~~It~p~~~dFyL~sh~~~q 820 (920)
|+++|+.+|++||..+.++|.|+|||||||||||||||+.+.. .|+|||||||+.||||.++|||||||+++|
T Consensus 696 vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~q 775 (876)
T KOG1041|consen 696 VLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQ 775 (876)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCccc
Confidence 9999999999999999999999999999999999999998664 599999999999999999999999999999
Q ss_pred ccccCceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcccccccCCCCCcccCCCCC--CC
Q 002449 821 GTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMT--SA 898 (920)
Q Consensus 821 GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~~~~~~~~~~s~~~~~~--~~ 898 (920)
||+||||||||+||++|++|+||+|||+|||+|+|||+|||||+|+||||++|+|||.+.+- ...+.+.+.++.+ ..
T Consensus 776 GTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~-~~~~~~~~~~~~s~~~~ 854 (876)
T KOG1041|consen 776 GTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKE-HLREKNSSAIYQSIVDL 854 (876)
T ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhh-hccccCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998311 1112222112111 12
Q ss_pred CCCCCCCCchhhhccCCCeeeC
Q 002449 899 GPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~M~~~ 920 (920)
....+..++++|.++...||||
T Consensus 855 ~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 855 DALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred chhhhhhHHHhhhcccceEEeC
Confidence 2222567889999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-128 Score=1064.12 Aligned_cols=714 Identities=27% Similarity=0.445 Sum_probs=624.5
Q ss_pred CCCCCCCEEEEEeeEEEEEeccccceEEEEEeeeecCCCCCCCCchhHHHHHHHHHHHHhhhcCCCceeeeCCceeeecC
Q 002449 56 GLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVG 135 (920)
Q Consensus 56 g~Gt~G~~i~L~tN~F~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~ayDG~k~L~s~~ 135 (920)
..|+.|.+++|.||||++. ..+++.+|||+|++ .|.+++++++++++..+ +++-|+.++|||. +||.+.
T Consensus 87 KtGssG~pv~l~tN~f~l~-t~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLM-TRPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeec-cCCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 5699999999999999986 56899999999999 67888999888887754 4456889999998 999999
Q ss_pred CCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCCeEEEEEEEeeeecHHHHHHHhcCCCCcChHHH
Q 002449 136 PLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215 (920)
Q Consensus 136 ~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~ 215 (920)
++.++-.+.. ++ +.++..++|+|++++.++. ...+.
T Consensus 156 k~eq~~tel~-------~k------------------------s~~ge~i~I~ik~~~~~~~-------------t~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTELV-------SK------------------------SRDGELIKITIKLTNELPS-------------TDPQC 191 (845)
T ss_pred HHhhhhheee-------cc------------------------cCCCceEEEEEEEeccccC-------------CChhH
Confidence 9987654321 10 2356789999999999876 35689
Q ss_pred HHHHHHHHHhhhhhcCcccccccccCCCCCCcccCCCcEEEeecceEEEEEeCCeeEEeEeccceeeecCchHHHHHHHh
Q 002449 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIAN 295 (920)
Q Consensus 216 iq~Ldiilr~~~~~~~~~~vg~~fF~~~~~~~~~lg~G~e~~~Gf~~SvR~~~~gl~LNiDvs~~~F~k~~~l~d~l~~~ 295 (920)
||++|+|||..+....+.++||+||++..+...+ ...+++|+||.+|||..+..++|+.|++|++ .+..+|.|+|.++
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip-~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~ 269 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIP-EFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSC 269 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCcccccc-cccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHH
Confidence 9999999999998888899999999987543222 3579999999999999999999999999999 6788999999887
Q ss_pred cCCCCCChhhHHHHHhhccceEEEeeecCceEEEeecCCccccccccccccCCCCCCCCCccceeeeHHHHHHHhcCccc
Q 002449 296 QNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDL 375 (920)
Q Consensus 296 ~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~~YF~~~Y~i~L 375 (920)
++. +. ...++.++++-|+.|.|.||||+|+|+++++...+..+|..++ .+||+.|||+++|||+|
T Consensus 270 ~~~--~~-~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d------------geIs~veYyk~qYni~I 334 (845)
T KOG1042|consen 270 QHN--TQ-RFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD------------GEISFVEYYKKQYNIEI 334 (845)
T ss_pred hhC--HH-HHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC------------ceeeHhHHHHHhcCeEE
Confidence 642 22 2456899999999999999999999999999999999997554 38999999999999999
Q ss_pred cCCCCCCeEec-CCCC-------CCceecccceEEccCccccccCCHHHHH------HHHHHhcCChHHHHHHHHHHHhh
Q 002449 376 RYSGDLPCINV-GKPK-------RPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKPQERMSVLSNALKL 441 (920)
Q Consensus 376 ~~~p~lP~v~v-g~~~-------r~~ylP~Elc~i~~~Q~~~k~Ls~~q~~------~mik~~~~~P~eR~~~i~~~~~~ 441 (920)
++ -+||++.. ++.+ ..+++.||||.++| |++++|+ +|.+++++.|++|.+.+..++..
T Consensus 335 ~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~ 406 (845)
T KOG1042|consen 335 TD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDR 406 (845)
T ss_pred ee-CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99 99999975 2222 35899999999997 6777776 68899999999999999988888
Q ss_pred ccCC--CcccccceeeEeecCceeeeeeecCCCceecCCCcc-cCCCCCccc--cCCceeecccccceEEEEEeCCch-h
Q 002449 442 SKYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED-FSPRNGRWN--FNNKKLVQPTKIERWAVVNFSARC-D 515 (920)
Q Consensus 442 ~~~~--~~~~L~~~Gi~i~~~~~~v~grvL~~P~i~~g~~~~-~~~~~g~Wn--~~~~~f~~p~~i~~W~vv~~~~~~-~ 515 (920)
+.-+ ....|+.|||+++++.++|+||+|++.+|.+|+++. ..+...+|. ++.-+++....+++|+|++.+... .
T Consensus 407 l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~ 486 (845)
T KOG1042|consen 407 LQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSE 486 (845)
T ss_pred HhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHH
Confidence 7443 346899999999999999999999999999998653 234557897 677788888999999999876554 6
Q ss_pred HHHHHHHHHHHHhhcCccccCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhh
Q 002449 516 IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNL 595 (920)
Q Consensus 516 ~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~ 595 (920)
++.|++.|.+.+..+||+|..|..+...+ ++.+.+++.|++....++++|+||+|+ .+.+.|+.|||+++
T Consensus 487 a~~fi~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~c 556 (845)
T KOG1042|consen 487 AQEFINMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLC 556 (845)
T ss_pred HHHHHHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhhee
Confidence 99999999999999999999998765432 456778889998887889999999998 78899999999999
Q ss_pred cccCceeeEeeccccchh-----HHHHHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeEE
Q 002449 596 ADFGIVTQCMAPMRVNDQ-----YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIA 670 (920)
Q Consensus 596 ~~~gI~TQci~~~~~~~q-----~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSia 670 (920)
++..||||||+.++++.+ ..++|+|||||||||..|.++ ||+ +.+||||+||+|.+.. ...|++
T Consensus 557 vd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvg 625 (845)
T KOG1042|consen 557 VDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVG 625 (845)
T ss_pred ccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEE
Confidence 999999999998765432 468999999999999999885 565 7899999999998753 457999
Q ss_pred EEEEecCCCccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhCCCCCceEEEeccCCChhHHHHHHH
Q 002449 671 AVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLN 750 (920)
Q Consensus 671 avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsEgq~~~V~~ 750 (920)
|+|||+| +.+++|++.+..|...+|+.+.|. -++..+|++||..| ..+|+|||+||||||+||+.++.+
T Consensus 626 a~VAs~n-~~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~n 694 (845)
T KOG1042|consen 626 AFVASMN-NDFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLVN 694 (845)
T ss_pred EEEEeec-cchhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceeee
Confidence 9999999 489999999999999999998875 48999999999875 699999999999999999999999
Q ss_pred HHHH----HHHHHHHHhcCCCCCcEEEEEEeeccccceecCCCC--CCCCCcceeecccccCccccEEeeeccCCCcccc
Q 002449 751 VELN----QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSR 824 (920)
Q Consensus 751 ~E~~----~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~--~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTar 824 (920)
+|++ ++.+.+++++.+++|+++||||+||.++|||..... .||+||||||+.||.|.++||||+||++.|||..
T Consensus 695 ~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvs 774 (845)
T KOG1042|consen 695 YEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVS 774 (845)
T ss_pred eccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcC
Confidence 9999 777778888888999999999999999999987653 7999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhccccc
Q 002449 825 PTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK 881 (920)
Q Consensus 825 PthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~~ 881 (920)
||||.||||+.++++|.+|+|||.|||+|+||.++|++||||+|||++|+.+++.|+
T Consensus 775 PTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH 831 (845)
T KOG1042|consen 775 PTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLH 831 (845)
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999775
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.9e-99 Score=870.10 Aligned_cols=407 Identities=48% Similarity=0.834 Sum_probs=367.2
Q ss_pred ccccceeeEeecCceeeeeeecCCCceecCCC-cccCCCCCccccCCceeecccccceEEEEEeCCc-------hhHHHH
Q 002449 448 PMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-------CDIRSL 519 (920)
Q Consensus 448 ~~L~~~Gi~i~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~~~~~-------~~~~~f 519 (920)
++|++|||+|+++|++|+||+|+||+|.|+++ ....+.+|+||+++++|++++.+++|+|+++... .+++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 4556789999999999999999999999998753 258999
Q ss_pred HHHHHHHHhhcCccccCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccC
Q 002449 520 VRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFG 599 (920)
Q Consensus 520 ~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~g 599 (920)
++.|.+.|+.+||.+. ..+ . .....++.+++.+++.....++|||||||+ ++.++|+.||++|+.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~--~~~-~--------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT--TAI-A--------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc--ccc-c--------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 111 1 113467788888887665578999999998 678999999999999999
Q ss_pred ceeeEeeccc----cchhHHHHHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCC-CCCCeEEEEEE
Q 002449 600 IVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGH-SDIPSIAAVVS 674 (920)
Q Consensus 600 I~TQci~~~~----~~~q~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~-~~~pSiaavVa 674 (920)
|+||||...+ .++||+.||+||||+||||+||.++... .+++...+|||||+||+||+++. ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999754 4789999999999999999999997532 22345689999999999999875 45799999999
Q ss_pred ecCCCccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhCCCCCceEEEeccCCChhHHHHHHHHHHH
Q 002449 675 SRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELN 754 (920)
Q Consensus 675 S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~ 754 (920)
|+|+ .+++|.+.+++|.+++|++++|. +|++++|+.|++. +|.+|++|||||||||||||.+|+++|++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l~---------~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDLE---------SMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHHH---------HHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9996 78999999999999999998764 6999999998776 56899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEeeccccceecCCC------CCCCCCcceeecccccCccccEEeeeccCCCccccCcee
Q 002449 755 QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHY 828 (920)
Q Consensus 755 ~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~------~~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTarPthY 828 (920)
+|++||.+++.+|+|+||||||+||||+|||+.+. ..||+||||||++||+|..+|||||||.++|||||||||
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y 374 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHY 374 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceE
Confidence 99999999988899999999999999999998653 379999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcccc
Q 002449 829 HVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFM 880 (920)
Q Consensus 829 ~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~ 880 (920)
+||+||+++++|+||+|||+|||+|+|||++||+|+|+||||++|+|||+||
T Consensus 375 ~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 375 HVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999986
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=6.5e-94 Score=832.14 Aligned_cols=433 Identities=30% Similarity=0.495 Sum_probs=386.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhccCCCc--ccccceeeEeecCceeeeeeecCCCceecCCCcccCCCCCccccC--
Q 002449 417 RASLVEKSRQKPQERMSVLSNALKLSKYDNE--PMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFN-- 492 (920)
Q Consensus 417 ~~~mik~~~~~P~eR~~~i~~~~~~~~~~~~--~~L~~~Gi~i~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~-- 492 (920)
+.+|+++++.+|++|++.|.++++.++++.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877665 589999999999999999999999999999876556778999864
Q ss_pred CceeecccccceEEEEEeCCch-hHHHHHHHHHHHHhhcCccccCCcceeccCccccCCCchHHHHHHHHHHHhhCCCCC
Q 002449 493 NKKLVQPTKIERWAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAP 571 (920)
Q Consensus 493 ~~~f~~p~~i~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~ 571 (920)
+..|+.+..+++|+++++..+. .+..|++.|.+.++.+||.+.+|..+...+ .+++.+++.+.+.....+
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5578999999999999986443 799999999999999999998887543321 235567777777665679
Q ss_pred eEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeecccc-----chhHHHHHHHHHhhccCCccccccccCCCCCCcccC
Q 002449 572 QFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSK 646 (920)
Q Consensus 572 ~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~-----~~q~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~ 646 (920)
+|+|||+|+ ++.++|..||++|+.+.||+||||...++ ..+++.||++|||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 66889999999999999999999997543 34689999999999999999998642 1235
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEEccCcccc-cccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEM-IDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.+|||||+||+|++++ ..||+||+|||+|. .+++|++.++.|..+.|+ +++| ++|++++|..|++.
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~- 293 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKE- 293 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHH-
Confidence 7899999999999873 45999999999995 889999999999999997 6665 46999999998776
Q ss_pred CCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecCCCC--CCCCCcceeeccc
Q 002449 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGTVVDNKV 803 (920)
Q Consensus 726 ~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~--~N~~pGTVVD~~I 803 (920)
+|.+|++|||||||||||||.+|+++|+++|++||..++.+|+|+||||+|+||||+|||+.+.. +||+||||||++|
T Consensus 294 ~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 294 NKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred hCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 47999999999999999999999999999999999998888999999999999999999997654 5999999999999
Q ss_pred ccCccccEEeeeccCCCccccCceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcc
Q 002449 804 CHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGS 878 (920)
Q Consensus 804 t~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~ 878 (920)
|+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||+|||+|+|+||||++|+|++.
T Consensus 374 t~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g~ 448 (448)
T cd04658 374 TKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448 (448)
T ss_pred cCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.3e-85 Score=747.29 Aligned_cols=380 Identities=31% Similarity=0.475 Sum_probs=328.8
Q ss_pred ceeeeeeecCCCceecCCCcccCCCCCccccCCceeeccccc-ceEEEEEeCCchhHHHHHHHHHHHHhhcCccccC-Cc
Q 002449 461 FAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKI-ERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQ-PF 538 (920)
Q Consensus 461 ~~~v~grvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~~p~~i-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-p~ 538 (920)
+++|+||+|+||.|.|+++ |++++++|..|+.+ ++|+|+++... ..++|++.|.+.++++||.+.. |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6789999999999999864 99999999999999 99999998653 4678999999999999999987 54
Q ss_pred ceeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeeccc-----cchh
Q 002449 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQ 613 (920)
Q Consensus 539 ~~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~-----~~~q 613 (920)
....+..+ +..+.++..++++ ....++|+|||+|+ ++.++|+.||++++.+ ||+||||...+ .+.+
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNA---IKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHH---hhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43222110 0123344444433 33468999999998 7789999999999988 99999998743 4578
Q ss_pred HHHHHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCC-CCCCCeEEEEEEecCCCccceEEEEEEEcc
Q 002449 614 YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG-HSDIPSIAAVVSSRHWPLISRYRAAVRTQS 692 (920)
Q Consensus 614 ~~~Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~-~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~ 692 (920)
+++||++|||+||||+||.++.. .+...+|||||+||+|++++ ....||++|+|+|+|. . +.|.+.++.|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 99999999999999999999642 12347899999999999875 3357999999999985 3 44445577888
Q ss_pred CcccccccccccccCcchHHHHHHHHHHHHHhhCCC-CCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcE
Q 002449 693 PKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKR-KPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKF 771 (920)
Q Consensus 693 ~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~-~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pki 771 (920)
.++|++++| ++|++++|..|++. ++. +|++|||||||||||||++|+++|+++|++||. ++.+|+|+|
T Consensus 215 ~~~~~~~~l---------~~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 215 SREVKLQDL---------GEVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred CccchHHHH---------HHHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 888887765 46999999998775 567 999999999999999999999999999999999 778899999
Q ss_pred EEEEEeeccccceecCCCC---CCCCCcceeecccccCccccEEeeeccCCCccccCceeEEEecCCCCCHHHHHHHHHH
Q 002449 772 AVIVAQKNHHTKFFQSGSP---DNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHS 848 (920)
Q Consensus 772 t~Ivv~Krh~tRff~~~~~---~N~~pGTVVD~~It~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~ 848 (920)
|||+|+||||+|||+.+.. .||+||||||++||||..+||||+||.++|||+|||||+||+||+++++|+||+|||+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~ 363 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYI 363 (393)
T ss_pred EEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997653 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCchHHHHHHHHHHhcc
Q 002449 849 LSYVYQRSTTAISVVAPICYAHLAASQVGS 878 (920)
Q Consensus 849 Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~ 878 (920)
|||+|+|||++||+|+|+||||++|+|||+
T Consensus 364 lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 364 LCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred HhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999985
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.6e-70 Score=606.97 Aligned_cols=293 Identities=46% Similarity=0.709 Sum_probs=257.9
Q ss_pred EEEEEcCCCCCCCchhhHHHHhhcccCceeeEeeccc---c--chhHHHHHHHHHhhccCCcc-ccccccCCCCCCcccC
Q 002449 573 FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---V--NDQYLTNVLLKINAKLGGLN-SLLAVEHSPSIPIVSK 646 (920)
Q Consensus 573 ~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~---~--~~q~~~Nv~lKiNaKLGG~n-~~l~~~~~~~~p~~~~ 646 (920)
+|+||+|+ ++.+.|+.+|++++.+.||+||||..++ . ..+++.||++|||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58899998 7889999999999999999999999743 2 36899999999999999996 544421 11122
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhC
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSG 726 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~ 726 (920)
.+|||||+||+|++++....||++|+|+|+| +..++|.+.+..|..++|++++|. +++.++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 7899999999999886545799999999999 488999999999999999998754 599999999887754
Q ss_pred CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecCCCC---CCCCCcceeeccc
Q 002449 727 KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP---DNVPPGTVVDNKV 803 (920)
Q Consensus 727 ~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~---~N~~pGTVVD~~I 803 (920)
+.+|++|||||||||||||.+|+++|+++|++||+++..+|.|+|+||+|+||||+|||+.+.. .||+||||||+.|
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 4499999999999999999999999999999999999999999999999999999999998764 5999999999999
Q ss_pred ccCccccEEeeeccCCCccccCceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhccccc
Q 002449 804 CHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK 881 (920)
Q Consensus 804 t~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~~ 881 (920)
|+|..+||||+||.++|||+|||||+||+||.+++.|+||+|||+|||+|+||++++|+|+|+||||++|+|++++++
T Consensus 225 ~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 225 TSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp EECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred eeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=7.8e-46 Score=424.95 Aligned_cols=286 Identities=21% Similarity=0.260 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEEcCCCC-----CCCchhhHHHHhhcccCceeeEeecccc-----chhHHHHHHHHHhh
Q 002449 555 RVEKMFDEIQSKLPGAPQFLLCLLPERK-----NSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINA 624 (920)
Q Consensus 555 ~ve~~~~~i~~~~~~~~~~vl~ilp~~~-----~~~~Y~~iK~~~~~~~gI~TQci~~~~~-----~~q~~~Nv~lKiNa 624 (920)
.+...++...+.....++++||++|+.. ..++|..||+++ .+.||+||||..+++ ..+++.||++|||+
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~a 173 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYA 173 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHH
Confidence 3334444443332346899999999832 278999999987 579999999997543 35689999999999
Q ss_pred ccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeEEEEEEecCCCccceEEEEEEEccCccccccccccc
Q 002449 625 KLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKK 704 (920)
Q Consensus 625 KLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~ 704 (920)
|+||+||.|+.. ...+|||||+||+|+..++...+++|+|+.+ +. .. .+..+.+..+.+.+-
T Consensus 174 KlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~g---~g---~~~~~~~~~~~~~~~--- 235 (404)
T cd04659 174 KLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-DG---LG---LILRGAPIEEPTEDR--- 235 (404)
T ss_pred hcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-CC---CE---EEEecCccCCccccc---
Confidence 999999999631 2368999999999998653233555554333 31 11 122222233333210
Q ss_pred ccCcchHHHHHHHHHHHHHhhCCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccce
Q 002449 705 VSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKF 784 (920)
Q Consensus 705 ~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRf 784 (920)
..+.+..+++++|..|.+.++..+|++|||||||+. .++|+++|++||..++ |+++||+|+|+||+||
T Consensus 236 -~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~ 303 (404)
T cd04659 236 -SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRL 303 (404)
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcce
Confidence 011355799999999877654349999999999993 6899999999999874 8999999999999999
Q ss_pred ecCCCC---CCCCCcceeecccccCccccEEeeeccCC--------CccccCceeEEEecCCCCCHHHHHHHHHHhhhcc
Q 002449 785 FQSGSP---DNVPPGTVVDNKVCHPRNYDFYLCAHAGM--------IGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVY 853 (920)
Q Consensus 785 f~~~~~---~N~~pGTVVD~~It~p~~~dFyL~sh~~~--------qGTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y 853 (920)
|..+.. .||++|||||.+ .+||||++|.+. +||+||+| |++|+...+.|+|+++||.||++|
T Consensus 304 f~~~~~~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~ 376 (404)
T cd04659 304 FRFGTYPNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLN 376 (404)
T ss_pred EEecCCCCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcC
Confidence 986554 479999999954 499999999885 99999999 778988899999999999999999
Q ss_pred ccccC-CCCCCchHHHHHHHHHHhcc
Q 002449 854 QRSTT-AISVVAPICYAHLAASQVGS 878 (920)
Q Consensus 854 ~r~t~-svsiPaP~~YA~~~a~r~~~ 878 (920)
+|++. ++++|+|+||||++|+.++.
T Consensus 377 ~n~~~~~~~lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 377 WNSFQFYSRLPVTIHYADRVAKLLKR 402 (404)
T ss_pred cCCCCCCCCcceEEeHHHHHHHHHhc
Confidence 99998 99999999999999987654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=1.5e-22 Score=196.82 Aligned_cols=130 Identities=39% Similarity=0.587 Sum_probs=108.7
Q ss_pred chHHHHHHHhcCCCCCChhhH-HHHHhhccceEEEeeecC--ceEEEeecCCccccccccccccCCCCCCCCCccceeee
Q 002449 286 GPVVDFLIANQNVRDPFSIDW-AKAKRTLKNLRIKTITSN--QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEIT 362 (920)
Q Consensus 286 ~~l~d~l~~~~~~~~~~~~d~-~~~~~~Lkgl~V~~~~~~--r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~~iT 362 (920)
++|+|++.+..+........+ .++++.|+|++|.++|++ +.|+|.+|+..++++.+|..+. ++++|
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~-----------g~~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND-----------GKEIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT-----------SEEEE
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC-----------CceEE
Confidence 478999998776655444333 348999999999999998 9999999999999999998662 26999
Q ss_pred HHHHHHHhcCccccCCCCCCeEecCCCCC--CceecccceEEccCccccccCCHHHHHHHHHHhcCC
Q 002449 363 VYDYFVNNRNIDLRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (920)
Q Consensus 363 V~~YF~~~Y~i~L~~~p~lP~v~vg~~~r--~~ylP~Elc~i~~~Q~~~k~Ls~~q~~~mik~~~~~ 427 (920)
|+|||+++||++|+| |+||||+++..++ ++|||||||.|+|+|++.+++.+.|++.|++.++.+
T Consensus 70 v~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 999999999999999 9999999998877 999999999999999999999999999999998863
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.78 E-value=8.6e-19 Score=165.38 Aligned_cols=107 Identities=41% Similarity=0.773 Sum_probs=92.6
Q ss_pred chHHHHHHHhcCCCCC---ChhhHHHHHhhccceEEEeeec---CceEEEeecCCccccccccccccCCCCCCCCCccce
Q 002449 286 GPVVDFLIANQNVRDP---FSIDWAKAKRTLKNLRIKTITS---NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQEL 359 (920)
Q Consensus 286 ~~l~d~l~~~~~~~~~---~~~d~~~~~~~Lkgl~V~~~~~---~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~ 359 (920)
++|+|++.+..+.... ...++.+++++|+|++|.++|. +|.|+|.||+..++.+.+|..+.++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----------~ 71 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----------K 71 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----------c
Confidence 6899999987765432 2346778999999999999997 6999999999999988999765421 4
Q ss_pred eeeHHHHHHHhcCccccCCCCCCeEecCCCCCCceecccceEEc
Q 002449 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELV 403 (920)
Q Consensus 360 ~iTV~~YF~~~Y~i~L~~~p~lP~v~vg~~~r~~ylP~Elc~i~ 403 (920)
++||+|||+++||++|+| |+||||++|+.++++|+|||||.|+
T Consensus 72 ~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 72 EISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 899999999999999999 9999999999889999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.77 E-value=1.1e-18 Score=164.54 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=89.9
Q ss_pred CchHHHHHHHhcCCCCC----ChhhHHHHHhhccceEEEeeec--CceEEEeecCCccccccccccccCCCCCCCCCccc
Q 002449 285 PGPVVDFLIANQNVRDP----FSIDWAKAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (920)
Q Consensus 285 ~~~l~d~l~~~~~~~~~----~~~d~~~~~~~Lkgl~V~~~~~--~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~ 358 (920)
.+||+|++.+..+.++. ...++.++.+.|+|++|.++|+ ++.|+|.||++.+++++ |...+ +
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~-----------~ 68 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD-----------G 68 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC-----------C
Confidence 36899999887654322 3346778999999999999997 79999999999999988 75332 2
Q ss_pred eeeeHHHHHHHhcCccccCCCCCCeEecCCC---CCCceecccceEEc
Q 002449 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKP---KRPTYIPLELCELV 403 (920)
Q Consensus 359 ~~iTV~~YF~~~Y~i~L~~~p~lP~v~vg~~---~r~~ylP~Elc~i~ 403 (920)
.++||+|||+++||++|+| |+||||++|+. .+++|||||||.|+
T Consensus 69 ~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 69 KEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 4899999999999999999 99999999987 77899999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.74 E-value=4.2e-18 Score=160.09 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=87.9
Q ss_pred hHHHHHHHhcCCCCCChhhHHHHHhhccceEEEeeecCceEEEeecCCccccccccccccCCCCCCCCCccceeeeHHHH
Q 002449 287 PVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDY 366 (920)
Q Consensus 287 ~l~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~~Y 366 (920)
+++|++....+.. +...+++++++.|+|+.|.+.|+|+.|+|.+|++.+++.++|+.+++ .++||+||
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----------~~~S~~~Y 70 (117)
T cd02845 3 TVLDRMHKLYRQE-TDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----------TEITFVEY 70 (117)
T ss_pred eHHHHHHHHHHhc-ccHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----------CeeeHHHH
Confidence 5778777644321 11125678999999999999999999999999999999999975431 37899999
Q ss_pred HHHhcCccccCCCCCCeEecCCCC--------CCceecccceEEccC
Q 002449 367 FVNNRNIDLRYSGDLPCINVGKPK--------RPTYIPLELCELVSL 405 (920)
Q Consensus 367 F~~~Y~i~L~~~p~lP~v~vg~~~--------r~~ylP~Elc~i~~~ 405 (920)
|+++||+.|+| ++|||+.++.++ +++|||||||.++|.
T Consensus 71 y~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 71 YKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 99999999999 999999997643 479999999999984
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.53 E-value=5.2e-15 Score=117.67 Aligned_cols=51 Identities=49% Similarity=0.762 Sum_probs=41.6
Q ss_pred cccccccCCCCCCcccCCCcEEEeecceEEEEEeCCeeEEeEeccceeeecC
Q 002449 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP 285 (920)
Q Consensus 234 ~vg~~fF~~~~~~~~~lg~G~e~~~Gf~~SvR~~~~gl~LNiDvs~~~F~k~ 285 (920)
.+||+||+.+... .+|++|+|+|+|||+|+||++++|.||||+++++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987554 78999999999999999999999999999999999985
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.39 E-value=4.1e-13 Score=129.03 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=69.8
Q ss_pred HHhhccceEEEeeecCceEEEeecCCccccccccccccCCCCCCCCCccceeeeHHHHHHHhcCccccCCCCCCeEecCC
Q 002449 309 AKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388 (920)
Q Consensus 309 ~~~~Lkgl~V~~~~~~r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~~YF~~~Y~i~L~~~p~lP~v~vg~ 388 (920)
..+.|+|+.|.+.|+++.|+|.+|+ ..+++++|+.+++. ..+||+|||+++|||+|+| ++|||+++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~----------~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~ 94 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGL----------GYATYAEYFKEKYGIVLNH-PNQPLLKGKQ 94 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCC----------ceeeHHHHHHHHhCceecc-CCcceEEEec
Confidence 4568999999999999999999999 88999999765321 3689999999999999999 9999997541
Q ss_pred --------------------CC---CCceecccceEEcc
Q 002449 389 --------------------PK---RPTYIPLELCELVS 404 (920)
Q Consensus 389 --------------------~~---r~~ylP~Elc~i~~ 404 (920)
.. -.++||||||.+.+
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 01 13689999999864
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.5e-09 Score=120.32 Aligned_cols=344 Identities=19% Similarity=0.163 Sum_probs=188.4
Q ss_pred cCCCceecCC-CcccCCCCCccccCCceeecccccceEEEEEe-CCc-h---hHHHHHHHHHHHHhhcC-ccc--cCCcc
Q 002449 469 LPAPRLKFGN-GEDFSPRNGRWNFNNKKLVQPTKIERWAVVNF-SAR-C---DIRSLVRDLIKCGEMKG-ILI--DQPFD 539 (920)
Q Consensus 469 L~~P~i~~g~-~~~~~~~~g~Wn~~~~~f~~p~~i~~W~vv~~-~~~-~---~~~~f~~~L~~~~~~~G-~~i--~~p~~ 539 (920)
-.+|.+..|+ |.+.....--|++- .+..|.....|.-+.. ..+ + -...+.+.+.+..+..+ +.. .-+..
T Consensus 307 ek~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l 384 (685)
T COG1431 307 EKGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTL 384 (685)
T ss_pred ccCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhccccee
Confidence 3455666665 44322223334432 2344544455654432 111 1 36778888888877665 322 22221
Q ss_pred eeccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeeccc---cchhHHH
Q 002449 540 VFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQYLT 616 (920)
Q Consensus 540 ~~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~---~~~q~~~ 616 (920)
.... .+....+.+-.++.++ ....+...-+- ++...|+.+|| .+.-|++|.|.-.+ .-.-+++
T Consensus 385 ~~a~----~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~t 450 (685)
T COG1431 385 HVAG----KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKT 450 (685)
T ss_pred eecc----cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhhh
Confidence 1100 0100112222233332 01123333333 56678999998 45679999998532 2345789
Q ss_pred HHHHHHhhccCCccccccccCCCCCCcccCCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcc
Q 002449 617 NVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKV 695 (920)
Q Consensus 617 Nv~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~ 695 (920)
|+++|+-+|-+|+++.+.... ..-+-|+|+||+..+-|. ..+-|++.-.+. ..+-+|.-.+..- .+
T Consensus 451 nla~~~~~ktlgqpY~~r~~~--------gpvDaivGlDvsr~~~gn---~tV~gct~~f~seg~l~eyy~t~tpa-~G- 517 (685)
T COG1431 451 NLASKRYLKTLGQPYLKRNGL--------GPVDAIVGLDVSRVSEGN---WTVEGCTSCFVSEGGLEEYYHTVTPA-LG- 517 (685)
T ss_pred HHHHHHHHHhcCCceeeeccC--------CCccceeeeeeeEEeeCC---eEEeeeeEEEeccCceEEeeecccCC-cc-
Confidence 999999999999999874211 123689999999986432 344442221221 1233333221110 00
Q ss_pred cccccccccccCcchHHHHHHHHHHHHHhhCCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 002449 696 EMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIV 775 (920)
Q Consensus 696 E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Iv 775 (920)
|.... . +-..|.+. + .+-..-.+|++.|||- +...|++++++.=+.++ ..++++.
T Consensus 518 Erl~~---------~-g~yle~~~-~---~gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg----sn~ev~~ 572 (685)
T COG1431 518 ERLET---------S-GRYLEKMN-W---RGFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG----SNPEVNR 572 (685)
T ss_pred chhhh---------H-HHHHHHHH-h---hhhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC----CChhhhe
Confidence 11100 0 00111111 1 1123457799999993 56678887776666553 3456666
Q ss_pred EeeccccceecCCCCCCCCCccee------ecccccCccccEEeeeccCCCccccCceeEEEecCCCCCHHHHHHHHHHh
Q 002449 776 AQKNHHTKFFQSGSPDNVPPGTVV------DNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSL 849 (920)
Q Consensus 776 v~Krh~tRff~~~~~~N~~pGTVV------D~~It~p~~~dFyL~sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~L 849 (920)
+.|+ +-+||......- |-.+ ++.++.|. .....||-+|...-=..+ .+.-|-|- |.|+|
T Consensus 573 i~kn-Np~vf~~e~~i~---g~f~~~~~s~~h~~~~~y--------npv~~gT~~pi~~r~~~g--~l~~e~i~-lv~dL 637 (685)
T COG1431 573 ILKN-NPWVFAIEGEIW---GAFVRLDGSTVHLCCSPY--------NPVRRGTPRPIALRRRDG--KLDGELIG-LVHDL 637 (685)
T ss_pred eccc-CCeEEEecceee---eEEEecCCcccccccCCC--------CceecCCCcccccccccC--ccchhhHH-HHHHh
Confidence 6555 555887654210 3333 23333332 245678888876543333 34555555 99999
Q ss_pred hhccccccCC--CCCCchHHHHHHHHHHhccccc
Q 002449 850 SYVYQRSTTA--ISVVAPICYAHLAASQVGSFMK 881 (920)
Q Consensus 850 c~~y~r~t~s--vsiPaP~~YA~~~a~r~~~~~~ 881 (920)
+-+.+.+... .++|||++|||++.+.++.-.+
T Consensus 638 T~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~ 671 (685)
T COG1431 638 TAMNYSNPSGTWSRLPAPVHYADKASKLARYGVS 671 (685)
T ss_pred hhhccCCCCCceecCCcchhhhHHHHHHHhccCC
Confidence 9999988877 9999999999999999888553
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.41 E-value=3.7e-07 Score=84.94 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=55.7
Q ss_pred hhccceEEEeeecC----ceEEEeecCCccccccccccccCCCCCCCCCccceeeeHHHHHHHhcCccccCCCCCCeEec
Q 002449 311 RTLKNLRIKTITSN----QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (920)
Q Consensus 311 ~~Lkgl~V~~~~~~----r~~~I~gl~~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~~YF~~~Y~i~L~~~p~lP~v~v 386 (920)
..+.|..|.+.|+| +.|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||+|.|
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v 104 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------------EYETFEEYYKKKYKLDIQN-LNQPLLDV 104 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------------CCccHHHHHHHhcCeEecc-CCCCcEee
Confidence 35789999999998 899999999888888889532 2699999999999999999 99999998
Q ss_pred C
Q 002449 387 G 387 (920)
Q Consensus 387 g 387 (920)
.
T Consensus 105 ~ 105 (122)
T cd02843 105 D 105 (122)
T ss_pred c
Confidence 4
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=90.57 E-value=0.58 Score=45.59 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred cccCceeEEEecCCCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcccc
Q 002449 822 TSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFM 880 (920)
Q Consensus 822 TarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~ 880 (920)
.....=.+|+.=...-++++|..|||.||+.+.-+...+.+|.|+++|.+ ++.|+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~----~~eYi 120 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ----AKEYI 120 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH----HHHHc
Confidence 34455577776555568999999999999999999999999999999966 44666
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=85.61 E-value=5.4 Score=39.68 Aligned_cols=108 Identities=25% Similarity=0.299 Sum_probs=53.2
Q ss_pred CCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHh
Q 002449 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (920)
Q Consensus 646 ~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~ 724 (920)
+.|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- ..+... +-.+| =.+|.|.|..+|+.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~-f~i~~~--~~~dD----------y~~M~Evl~RR~~~ 71 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRR-FNIKTV--DGGDD----------YAAMREVLTRRFKR 71 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EE-EEEE----STT-H----------HHHHHHHHHHHHCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCce-EecCCC--CCCcH----------HHHHHHHHHHHHhc
Confidence 3567899999999753 2357777765443 22234442 333211 11133 25888888877753
Q ss_pred h---CCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccc
Q 002449 725 S---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTK 783 (920)
Q Consensus 725 ~---~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tR 783 (920)
. ...+|+-|+| || +.||+.. .++++++++-. .++.=++=.+.|.|+
T Consensus 72 ~~~~~~~lPDLilI--DG-G~gQl~a--------a~~~l~~lgl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 72 LKEEKEPLPDLILI--DG-GKGQLNA--------AKEVLKELGLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CHHHT----SEEEE--SS-SHHHHHH--------HHHHHHCTT------EEEEESSSSE---
T ss_pred ccccCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCCC--eEEEEEEeccccccc
Confidence 1 1268998887 88 5677654 46677766433 333333334446666
No 19
>PRK11617 endonuclease V; Provisional
Probab=80.52 E-value=51 Score=34.89 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcccc
Q 002449 835 IGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFM 880 (920)
Q Consensus 835 ~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~ 880 (920)
..++.|+--+++-.+|-- -++|.|+..||.+|.+.+...
T Consensus 179 h~i~l~~A~~~v~~~~~~-------yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 179 HRVSLDSALAWVQRCMKG-------YRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCcCHHHHHHHHHHHccC-------CCCCHHHHHHHHHHhhhhhhh
Confidence 357889999999887743 379999999999998888755
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=75.01 E-value=20 Score=43.47 Aligned_cols=110 Identities=32% Similarity=0.375 Sum_probs=64.4
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhCC
Q 002449 649 TIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGK 727 (920)
Q Consensus 649 tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~~ 727 (920)
.-|-++|+||-... -.|+++|.=.|. |.-..|.- .++.. .+-.+| =.+|+|.|...|+....
T Consensus 382 ~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~i~~--~~~~dD----------ya~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDGS----QTVGSMVVFEDGKPLKASYRR-YNINS--ITGGDD----------YAAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCCC----cceEEEEEEeCCccChhhCCe-eecCC--CCCCCH----------HHHHHHHHHHHHhhhcc
Confidence 66889999997632 367777765553 33234432 22211 011233 24788888777654211
Q ss_pred ----CCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEee--ccccceecCC
Q 002449 728 ----RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK--NHHTKFFQSG 788 (920)
Q Consensus 728 ----~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~K--rh~tRff~~~ 788 (920)
.+|+-||| || +.||+..+ .+++++++-. ..+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLGVV--NKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCC--CCCcEEEEEecCCCceEEEeCC
Confidence 48998887 87 67777654 5566666431 1355666666 7777887644
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=66.81 E-value=45 Score=40.97 Aligned_cols=110 Identities=22% Similarity=0.355 Sum_probs=65.1
Q ss_pred CCCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHh
Q 002449 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (920)
Q Consensus 646 ~~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~ 724 (920)
..|..|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++.... .-.+|. .+|+|.|...|..
T Consensus 452 ~~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR~-f~ik~~~-~~~DD~----------asM~Evl~RR~~r 515 (691)
T PRK14672 452 RIPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYRL-FNLRAHD-TRIDDF----------ASMREAIARRYTH 515 (691)
T ss_pred CCCCeEEEEECCccCC----cCceEEEEEEECCccChhhCCe-eeccCCC-CCCchH----------HHHHHHHHHHhhc
Confidence 3578999999999753 2367787765553 22233432 2232110 012332 4788888777754
Q ss_pred hC--CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceec
Q 002449 725 SG--KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (920)
Q Consensus 725 ~~--~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~ 786 (920)
.. ..+|+-||| || +.||+.. .++++++++- .+.+|-..||.-.-|+|
T Consensus 516 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 516 TPEGYTLPDLILV--DG-GIGHVSA--------AQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 21 258998887 77 5677654 4566666643 36678788876444444
No 22
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=62.07 E-value=63 Score=38.74 Aligned_cols=107 Identities=26% Similarity=0.389 Sum_probs=62.9
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-|+|+||-.. .-.|+++|.=.|. |.-..|.- .++.. .+-.+| =.+|+|.|...|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR~-f~Ik~--~~~~dD----------y~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYRR-FKIKT--VEGIDD----------FASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeCCccChhhcCe-eecCC--CCCCCH----------HHHHHHHHHHHHhhc
Confidence 355688999999753 2357777765553 33234432 23321 111232 247888887766542
Q ss_pred CC---CCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceec
Q 002449 726 GK---RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (920)
Q Consensus 726 ~~---~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~ 786 (920)
.. .+|+-||| || +-||+..+ .+++++++- .+.+|-..|+. .++|.
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg~----~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLGL----KIPLISIAKRE-EEIYV 475 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEcCc-eEEEe
Confidence 12 48998877 87 66777654 556666643 46777788875 44543
No 23
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=60.18 E-value=18 Score=34.11 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
+...++.++.. ...|.|+++.+.++..+..|...|...+.+.||.+..+.. .....+-+...+-++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 34444555554 4468898888876556788999999999999999998875 456666778888888854
No 24
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=59.86 E-value=66 Score=39.49 Aligned_cols=108 Identities=27% Similarity=0.289 Sum_probs=63.8
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~ik~~--~~~dD----------y~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYRK-FKLRSF--EGSDD----------YAAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 456788999999763 2357777765553 33334442 233211 11233 248888887777542
Q ss_pred C---CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecC
Q 002449 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (920)
Q Consensus 726 ~---~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~ 787 (920)
. +.+|+-||| || +.||+..+ .+++++++- .+.+|-..||. .++|..
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVNSA--------WKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 1 258998887 87 66776544 556666643 46677778844 455543
No 25
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=59.59 E-value=84 Score=38.14 Aligned_cols=108 Identities=27% Similarity=0.338 Sum_probs=62.4
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-... -.|+++|.=.|. |.-..|.- .++........+| =.+|+|.|...|+..
T Consensus 357 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YRk-f~ik~~~~~~~DD----------~a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNGQ----KTVASLVTFKMGKPFKDGYRV-YKINSLLKGEIDD----------FKAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eeccCCCCCCCCH----------HHHHHHHHHHHHhhc
Confidence 4578899999997632 357777765553 22233332 2222110000233 247888887777542
Q ss_pred C---CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecccc
Q 002449 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHT 782 (920)
Q Consensus 726 ~---~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~t 782 (920)
. +.+|+-||| || +.||+..+ .+++++++- ..++.+|-..|+.-+
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~--~~~i~v~gLaK~~e~ 468 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNAA--------YSILKGLKI--ENKVKVCALAKKEET 468 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC--CCCceEEEEecCCeE
Confidence 1 258998887 87 67776554 556666642 223777878886533
No 26
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=56.21 E-value=63 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHH
Q 002449 835 IGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAAS 874 (920)
Q Consensus 835 ~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~ 874 (920)
..++.|+--+++-.+|-- -++|.|+..||++|.
T Consensus 175 h~i~l~~A~~~v~~~~~~-------~r~Pep~R~Ad~~sr 207 (208)
T cd06559 175 HRIDLETAVELVLKCCKG-------YRLPEPTRLADLLSR 207 (208)
T ss_pred CCcCHHHHHHHHHHHccC-------CCCCcHHHHHHHHhc
Confidence 357888888888866543 679999999999985
No 27
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.08 E-value=29 Score=38.29 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 17 IAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred HHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334455554434468899888877667889999999999999999988874 34444456677778874
No 28
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=55.56 E-value=80 Score=38.29 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------~~~m~Evl~RR~~r~ 422 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEYRR-YKIKTV--DGIDD----------YASLREVLTRRARRY 422 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhhc
Confidence 356788999999653 2367888765553 32233432 233221 11233 258888887777542
Q ss_pred C---CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceec
Q 002449 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (920)
Q Consensus 726 ~---~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~ 786 (920)
. +.+|+-||| || +.||+..+ .+++++++- .|.+|-..|+. .++|.
T Consensus 423 ~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 423 KEGENPMPDLWLI--DG-GKGQLSVG--------IEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred cccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 1 148998887 87 56776544 556666653 36677777865 44554
No 29
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.50 E-value=40 Score=37.11 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 19 k~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 19 KLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 333444444433468888888877667889999999999999999988874 44555557777777774
No 30
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.64 E-value=43 Score=36.88 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
+.+.++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445554433468898888877667889999999999999999988764 44555557778888885
No 31
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=51.07 E-value=1.1e+02 Score=37.65 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++.. .+-.+| =.+|+|.|...|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YRk-f~Ik~--~~~~DD----------ya~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYRK-FIIKT--VVGVDD----------FASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eecCC--CCCCCH----------HHHHHHHHHHHhhcc
Confidence 456789999999653 2357777655543 22233432 22211 011233 247888887766542
Q ss_pred C--C-CCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceecC
Q 002449 726 G--K-RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (920)
Q Consensus 726 ~--~-~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~ 787 (920)
. + .+|+-||| || +.||+..+ .+++++++-+ .+.+|-..|+.. ++|-.
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elgl~---~i~vigLaK~~e-~i~~p 507 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHAA--------AEALEAIGIT---DQPLASIAKREE-IIYVF 507 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCC---CCcEEEEecCCe-EEECC
Confidence 1 1 48998877 87 67777654 5566666432 266777778764 45543
No 32
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.50 E-value=59 Score=35.79 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
.++.++++....|.|+++.+.++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 27 ~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 27 GVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443323368898888877677899999999999999999988774 445555577888888853
No 33
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.39 E-value=55 Score=36.16 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
+.++.++.+....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+..++.++|.-
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 20 TCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322358898888877677889999999999999999988875 344555577778888743
No 34
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.50 E-value=50 Score=36.24 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
..|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 358898888877677899999999999999999988874 44455456777788873
No 35
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=48.19 E-value=33 Score=41.90 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=4.4
Q ss_pred eeeeHHHHH
Q 002449 359 LEITVYDYF 367 (920)
Q Consensus 359 ~~iTV~~YF 367 (920)
.+.|..-|.
T Consensus 859 qk~TLLHfL 867 (1102)
T KOG1924|consen 859 QKTTLLHFL 867 (1102)
T ss_pred hhhHHHHHH
Confidence 355654443
No 36
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.36 E-value=54 Score=36.29 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
..++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 20 AQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444333457888888877567889999999999999999988764 445555577888888854
No 37
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.17 E-value=52 Score=37.07 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=47.7
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 560 ~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
++.++++....|.|+++.+.++..+..|...|...+.+.||.+..+.. ......-+...+.++|.
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444433468898888887677889999999999999999988774 34444446677788874
No 38
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.61 E-value=59 Score=35.74 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 20 k~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 20 RETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444444423358898888876567889999999999999999988874 44555567788888885
No 39
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.45 E-value=51 Score=36.23 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 19 VAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444544322357888888877567889999999999999999988875 345555566777888854
No 40
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.98 E-value=62 Score=36.72 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
.++.++++....|.|+++.+.++..+..|...|...+.+.||.+..+.. .....+-+.+.+.++|.
T Consensus 92 ~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 92 EVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3444554433458899888887677899999999999999999877763 34455456677777773
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.68 E-value=56 Score=35.97 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc--cCCccccc
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNSLL 633 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK--LGG~n~~l 633 (920)
...++.++++....|.|.++...++..+..|..+|...+.+.||.+..+.. ......-+..++-++|.. .-|+|..+
T Consensus 20 ~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 20 SVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 333444444323468898888877677899999999999999999988875 334444577888888865 56766544
No 42
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.67 E-value=59 Score=35.98 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
..++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 19 ~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 19 TRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322368898888877667889999999999999999988764 344555566777888753
No 43
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=45.47 E-value=66 Score=35.62 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 560 ~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334443323368898888877667889999999999999999888864 455555566777777743
No 44
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.56 E-value=68 Score=35.55 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
...++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 19 ~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 19 AAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443323358898888877667889999999999999999887764 344555566788888854
No 45
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.31 E-value=58 Score=36.03 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
+.+.++.++++....|.|+++..-++..+..|..+|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445544433468898888877667889999999999999999877763 44555556677788874
No 46
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.79 E-value=65 Score=35.41 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
...++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 18 ~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 18 KQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334444433 2357898888877667889999999999999999988774 34444456677888875
No 47
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.57 E-value=65 Score=35.39 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
..++.++++....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+++.++|.
T Consensus 19 ~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 19 TQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444443322358888888876566889999999999999999988864 34444456778888874
No 48
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=43.49 E-value=1.9e+02 Score=35.46 Aligned_cols=101 Identities=27% Similarity=0.277 Sum_probs=58.9
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++... +-.+| =.+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------ya~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYRR-YNIKGV--TGGDD----------YAAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 456788999999753 2367777765443 33334432 223221 11232 247888887766542
Q ss_pred ---CCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeec
Q 002449 726 ---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKN 779 (920)
Q Consensus 726 ---~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Kr 779 (920)
.+.+|+-||| || +.||+..+ .+++++++- .+.+|-..|+
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg~----~i~v~glaK~ 486 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELGL----DIPVVGLAKG 486 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCCC----CCcEEEEEec
Confidence 1258998887 88 67777654 556666653 2556655563
No 49
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.85 E-value=74 Score=35.02 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
...++.++.+....|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 19 k~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 19 AEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443323358888888877667889999999999999999977764 445555677788888853
No 50
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.69 E-value=67 Score=35.27 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
+.++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 19 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 19 EKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444433 2357888888877567889999999999999999998875 33444456677778874
No 51
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.22 E-value=72 Score=35.10 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 31 ITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358888888877566789999999999999999988874 445555566777888754
No 52
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.14 E-value=75 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=47.3
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
.++.++++ ...|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 23 ~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 23 DVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444333 2368898888877667889999999999999999987764 44555556677777774
No 53
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.90 E-value=79 Score=34.79 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 557 e~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
...++.++++....|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 18 ~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 18 KNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443323468888888877667889999999999999999987764 344455567788888853
No 54
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=40.66 E-value=1.9e+02 Score=35.83 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhh
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~ 725 (920)
.|.-|-++|+||-.. .-.++++|.=.|. |.-..|.- .++... + .+| =++|.|.+...|.+.
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR~-f~i~~~--~-~dD----------~~~m~ev~~RR~~~~ 532 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYRT-YAFEDG--E-GDD----------YGTLAAWAGRRVESG 532 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEECCccChhhCCe-eeCCCC--C-CCh----------HHHHHHHHHHHhcCC
Confidence 567889999999763 2356777654443 32233332 222111 1 132 248888887766542
Q ss_pred CCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEee
Q 002449 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK 778 (920)
Q Consensus 726 ~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~K 778 (920)
..+|+-||| || +.||+..+ .+++++++-+ ..|.+|-..|
T Consensus 533 -~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 533 -PPWPDLLLV--DG-GRGQLAAV--------VRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred -CCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCCC--CCccEEEEec
Confidence 258998877 77 56777654 5566666432 1366777777
No 55
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.43 E-value=78 Score=34.70 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 556 ve~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
+...++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 18 lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 18 IKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444311247888888877566788999999999999999987764 344444466777888753
No 56
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.36 E-value=74 Score=34.99 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
..++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 21 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 21 EEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444433 2357888888877667889999999999999999988764 344444567777788754
No 57
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=36.57 E-value=2e+02 Score=34.99 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=58.7
Q ss_pred CEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHhhC
Q 002449 648 PTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSG 726 (920)
Q Consensus 648 ~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~~~ 726 (920)
|.-|-++|+||-.. .-.|+++|.=.|. |.-..|.- .++.. + .+|. .+|+|.|...|.+..
T Consensus 375 p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR~-f~i~~-~---~dD~----------~~m~Evl~RR~~r~~ 435 (577)
T PRK14668 375 PERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYRR-KKLTE-R---NDDY----------ANMRELVRWRAERAV 435 (577)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEECCccCHHHcCe-ecCCC-C---CChH----------HHHHHHHHHHHHhhh
Confidence 56788999999753 2357777765553 32233432 22322 1 2332 477787777665411
Q ss_pred -----CCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeecc
Q 002449 727 -----KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNH 780 (920)
Q Consensus 727 -----~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh 780 (920)
+.+|+-||| || +-||+..+ .+++++++- .+.+|-..|+.
T Consensus 436 ~~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~elg~----~i~v~glaK~~ 479 (577)
T PRK14668 436 EGRDDRPDPDLLLI--DG-GDGQLGAA--------RDALAETGW----DVPAIALAKAE 479 (577)
T ss_pred ccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEcCC
Confidence 258998887 77 56776544 556666643 36677777754
No 58
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.10 E-value=93 Score=34.30 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457888888877667889999999999999999988874 344455567888888853
No 59
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.24 E-value=97 Score=34.09 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=46.0
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 560 ~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
++.++++ ...|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 22 i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 22 VAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred HHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 2357888888877567889999999999999999988774 34444445677777874
No 60
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.07 E-value=99 Score=34.06 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 569 ~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468898888877667889999999999999999988774 34444456678888873
No 61
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=34.31 E-value=97 Score=33.93 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 558 ~~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
...+.++++....|.|.++..-+.-.+..|-..|...+.+.||.+..... ......-+.++..++|.
T Consensus 18 ~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 18 EKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 33344444323468898888877556889999999999999999988875 45556667778778764
No 62
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=33.34 E-value=28 Score=33.12 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.1
Q ss_pred hccccccCCCCCCchHHHHHHHHHHhcccc
Q 002449 851 YVYQRSTTAISVVAPICYAHLAASQVGSFM 880 (920)
Q Consensus 851 ~~y~r~t~svsiPaP~~YA~~~a~r~~~~~ 880 (920)
|.|+-.-++-=+|.|++|||+++.|....-
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R 41 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVR 41 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHH
Confidence 456666677789999999999999886644
No 63
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.29 E-value=1.1e+02 Score=33.74 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
.++.++++ ...|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 20 ~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 20 EVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444433 2357888888877567889999999999999999977764 44555556777777774
No 64
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.28 E-value=1.1e+02 Score=33.85 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=47.1
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 560 ~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
++.+++. ...|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 22 v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 22 IETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444432 2357888888877567889999999999999999987764 345555567777888743
No 65
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.18 E-value=1.3e+02 Score=33.12 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhhc
Q 002449 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (920)
Q Consensus 568 ~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNaK 625 (920)
...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468898888877667889999999999999999988874 444555566777888743
No 66
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.92 E-value=1.3e+02 Score=33.16 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=47.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 559 ~~~~i~~~~~~~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
.++.++.+ ...|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+..++.++|.
T Consensus 22 ~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 22 RAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444433 2358898888877677889999999999999999977764 44555556677777774
No 67
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=32.79 E-value=3.1e+02 Score=33.40 Aligned_cols=107 Identities=27% Similarity=0.334 Sum_probs=60.0
Q ss_pred CCEEEEEEEeecCCCCCCCCCeEEEEEEecCC-CccceEEEEEEEccCcccccccccccccCcchHHHHHHHHHHHHHh-
Q 002449 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS- 724 (920)
Q Consensus 647 ~~tmiiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~e~L~~f~~~- 724 (920)
.|.-|-++|.||.... -.|+++|.-.+. |.-..|. ...+. .+-.+ +=++|+|.|..=|..
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YR-ry~i~---~~~~d----------Dya~m~evl~RR~~~~ 439 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYR-RYNIK---ITGGD----------DYASMREVLTRRYSRL 439 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcCCCCChhhcc-ccccc---CCCCc----------hHHHHHHHHHHHhhhc
Confidence 4567889999997642 357777766553 2112222 11111 01122 224677776544433
Q ss_pred hCCCCCceEEEeccCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeeccccceec
Q 002449 725 SGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (920)
Q Consensus 725 ~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~ 786 (920)
....+|+-|+| || +-||+..+ ++++++++-.. | +|-+.|+-.+-|++
T Consensus 440 ~~~~~Pdli~i--DG-GkgQl~~a--------~~vl~~l~~~~-~---viglaK~~~~~~~~ 486 (581)
T COG0322 440 LKEELPDLILI--DG-GKGQLNAA--------KEVLKELGLDI-P---VIGLAKGEEELLLP 486 (581)
T ss_pred cccCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCCCc-c---EEEEEecCceeEec
Confidence 22379977766 77 67777654 55677665443 2 77788887755554
No 68
>PRK00766 hypothetical protein; Provisional
Probab=30.66 E-value=88 Score=32.38 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHhcc
Q 002449 835 IGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGS 878 (920)
Q Consensus 835 ~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~ 878 (920)
.+.+.++-.+++-.+|--| ++|-|+..||++|.....
T Consensus 152 ~gi~l~~A~~lv~~~~~~~-------riPEPlR~Ahlia~~~~~ 188 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTRS-------LIPEPLRLAHLIASGVML 188 (194)
T ss_pred cCCCHHHHHHHHHHhccCC-------CCchhhHHHHHHHHHhhc
Confidence 5688999999999888633 689999999999975543
No 69
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.26 E-value=1.3e+02 Score=33.23 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHHhhcccCceeeEeec-cccchhHHHHHHHHHhh
Q 002449 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (920)
Q Consensus 570 ~~~~vl~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Nv~lKiNa 624 (920)
.|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888877567889999999999999999988774 34444456677777874
No 70
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=29.23 E-value=86 Score=32.18 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=33.8
Q ss_pred eeEEEEEeccccceEEEEEeeeecCCCCCCCCchhHHHHHHHHHHHH
Q 002449 68 TNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114 (920)
Q Consensus 68 tN~F~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~ 114 (920)
==+|+..+...+.++|-|.|.+ .+...+|++++-+++.+....
T Consensus 107 f~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 107 FTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred EEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 3467777777778999999999 456678999999998877543
No 71
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.99 E-value=97 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=12.9
Q ss_pred cccCCCCCCCCCCEEEEEeeEEEEEe
Q 002449 50 VPISRRGLGSRGQRISLLTNHFKVNV 75 (920)
Q Consensus 50 ~~~~Rpg~Gt~G~~i~L~tN~F~v~~ 75 (920)
++|+|+..+. =.+-.+.-|+|=|.+
T Consensus 624 ~~Mrr~nW~k-I~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 624 VPMRRFNWSK-IVPRDLSENCFWVKV 648 (1102)
T ss_pred CccccCCccc-cCccccCccceeeec
Confidence 4556665554 233445555555543
No 72
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=24.48 E-value=43 Score=37.32 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=28.5
Q ss_pred hhhccccccCCCCCCchHHHHHHHHHHhccccc
Q 002449 849 LSYVYQRSTTAISVVAPICYAHLAASQVGSFMK 881 (920)
Q Consensus 849 Lc~~y~r~t~svsiPaP~~YA~~~a~r~~~~~~ 881 (920)
+-|.|+-.-++.=+|+|++|||++++|..++-+
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk 157 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRK 157 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHh
Confidence 567888888899999999999999999988543
No 73
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.12 E-value=66 Score=41.02 Aligned_cols=37 Identities=32% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccccccCCCCCCCCCCE
Q 002449 15 NGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQR 63 (920)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~ 63 (920)
++.|+.-||||| .||+.+|.. ...|+.-||+...-+.
T Consensus 2 a~lppg~ppppp-pppg~epps-----------~pppPppPg~~~~~r~ 38 (2365)
T COG5178 2 ASLPPGNPPPPP-PPPGFEPPS-----------QPPPPPPPGVNVKKRS 38 (2365)
T ss_pred CCCCCCCCcccc-cCCCCCCCC-----------CCCCccCCCcchhhhc
Done!