Query 002449
Match_columns 920
No_of_seqs 226 out of 1117
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:00:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002449.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1173-1177//hhsearch_pdb/002449hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1486.7 79.4 808 48-920 24-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1406.0 62.7 841 46-920 14-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 811.2 38.4 652 67-881 6-694 (706)
4 2yhb_A QDE-2, post-transcripti 1.0 1 1 792.5 21.1 404 491-920 2-437 (437)
5 1u04_A Argonaute, hypothetical 1.0 1 1 763.0 42.9 667 63-884 3-760 (771)
6 2yha_A Post-transcriptional ge 1.0 1 1 653.5 23.3 361 491-920 2-388 (388)
7 3ho1_A Argonaute; argonaute, p 1.0 1 1 651.1 48.0 638 62-878 5-668 (685)
8 2w42_A PIWI, putative uncharac 1.0 1 1 441.7 14.3 357 468-884 5-409 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 205.7 9.2 131 283-427 2-143 (143)
10 1r6z_P Chimera of maltose-bind 1.0 1 1 204.4 8.8 124 276-413 375-509 (509)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1486.71 Aligned_cols=808 Identities=33% Similarity=0.580 Sum_probs=700.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf 323567899998998789994687878506640289987654127999878813479999999998721-0189854660
Q 002449 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNA-ELDGKDFAYD 126 (920)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~-~~~g~~~~yD 126 (920)
...+++|||+||.|++|.|+||||++++. +..+|||||+|.| +++.++++|+|++++.+++.. .|++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCEEEEEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 56679899789888478999556998778--8862650378478----76767799999999998755665068607875
Q ss_pred CCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCC
Q ss_conf 87505643778999615899962554457899999999999998753233688899749999997332068999998627
Q 002449 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (920)
Q Consensus 127 G~k~lyS~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g 206 (920)
|+++|||+++||.+..++++..... + ..++++|+|+|++++++++.+|..+++|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~------------~--------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP------------G--------------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCCEEEEEECC------------C--------------CCCCCEEEEEEEEEEECCHHHHHHHHCC
T ss_conf 8631788876787786369998637------------8--------------8987279999999024388999999649
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCEEEEEEECCCEEEECCC
Q ss_conf 98867379999999999812433073013421127999883238996898424468999708804796732300122275
Q 002449 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (920)
Q Consensus 207 ~~~~~~~~aiq~Ldiilr~~~~~~~~~~~g~sfF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~k~~ 286 (920)
+....+++++|+||||||+.++ +.+..+||+||.+......++|+|+|+|+||++|||+++++++||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECC
T ss_conf 9878828999999999976221-246426877558987750116898799845067898517852785414310276077
Q ss_pred HHHHHHHHHCCCCCC-------CHHHHHHHHHHCCCEEEEEEE---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 089999972399998-------703299999650660999642---6912999406876534432102358987898875
Q 002449 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (920)
Q Consensus 287 ~l~d~l~~~~~~~~~-------~~~~~~~~~~~Lkgl~V~~~~---~nr~~kI~gls~~~a~~~~F~~~~~~~~~~~~~~ 356 (920)
+|+|++.+..+.++. ...++.++++.|+|++|.++| ++|.|+|.||++.++.+++|.++..+ |
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-----g-- 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-----G-- 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-----S--
T ss_pred CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCC-----C--
T ss_conf 099999998634550220356577899999998579389983037788659995378899877678765278-----9--
Q ss_pred CCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 43144398999872595135799997373289999812215614883674213458999999999893089499999999
Q 002449 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (920)
Q Consensus 357 ~~~~iTV~dYf~~~Y~i~L~y~p~lP~i~vg~~~r~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~~~~~P~eR~~~i~ 436 (920)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|+++|+|.++|++.|+++|+++++..|.+|++.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 841688899998753952479-9976388348888752565668940784455668989999999987549799999999
Q ss_pred HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEECCCCC--CCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-
Q ss_conf 99760258895334411268506702543366289931048973--359999854557831105666423999994980-
Q 002449 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (920)
Q Consensus 437 ~~l~~~~~~~~~~L~~~Gi~I~~~~~~v~arvL~~P~i~~g~~~--~~~~~~g~Wn~~~~~f~~p~~i~~Wavv~~~~~- 513 (920)
++++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|.|++++++|++|+++++|++++|+..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHHCCCCCHHHHHCCCEEECCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCC
T ss_conf 99987168975689977978838756897798258648856876433378878513569887027544405999845754
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
Q ss_conf ----11999999999997523953369-9520016953348980577999999998649999809999917998997346
Q 002449 514 ----CDIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (920)
Q Consensus 514 ----~~~~~f~~~L~~~~~~~G~~i~~-p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~p~~il~ilp~~~~~~~Y~ 588 (920)
..++.|++.|.+.|+.+||.+.. |...... ...++++.+++.+++..+ .++|||||+|+ + .++|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-------~~~~~~~~~~~~l~~~~~-~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-------QGADSVEPMFRHLKNTYA-GLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-------CSSSSHHHHHHHHHHHST-TCCEEEEEESS-S-CTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-------CCHHHHHHHHHHHHHHCC-CCCEEEEEECC-C-CCHHH
T ss_conf 44589999999999999850786547997377725-------845789999999985268-98389999589-8-42899
Q ss_pred HHHHHHHCCCCCEEEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 68887520139245674024---455467889898876516995423443579998843588879999983149999999
Q 002449 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (920)
Q Consensus 589 ~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmIiG~DVsH~~~~~~~ 665 (920)
.||++||.+.||+||||..+ +.++||+.||+||||+||||+||.+... ..|.+...+|||||+||+||++|...
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 999974306784228997212255567899999999988619833044665---46534689658998772146888778
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 88299999705889632177899980576300223222346862589999999999986199999459995068893679
Q 002449 666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQF 745 (920)
Q Consensus 666 ~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf 745 (920)
.|||||+|||+|+ ..++|.+.++.|.+++|+|++| +.|++++|.+|++.+ +.+|++|||||||||||||
T Consensus 610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l---------~~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~ 678 (861)
T 4f3t_A 610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQF 678 (861)
T ss_dssp CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTH---------HHHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGH
T ss_pred CCEEEEEEEECCC-CCCEEEEEEEECCCCCCHHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHH
T ss_conf 8659999998479-8565878999758995589989---------999999999999982-8998459999268776889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCC------CCCCCCCCEEECCCCCCCCCCEEEEECCCC
Q ss_conf 99999999999999997158999809999994244330214899------999999116505555686221796002587
Q 002449 746 NQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGTVVDNKVCHPRNYDFYLCAHAGM 819 (920)
Q Consensus 746 ~~v~~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~ 819 (920)
.+|+++|+++|++||..++.+|+|+||||||+||||+|||+.+. .+|++||||||++||+|.+||||||||.++
T Consensus 679 ~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~ 758 (861)
T 4f3t_A 679 QQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGI 758 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECC
T ss_conf 99999999999999998544779857999997256635622587533344689898401157502588777999888514
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCC-CCCCCC
Q ss_conf 75546732699946999998899999999640012346987787657899999997412242-3688887666-799988
Q 002449 820 IGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK-FDDLSETSSS-QGGMTS 897 (920)
Q Consensus 820 ~GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~A~r~~~~l~-~~~~~~~~s~-~~~~~~ 897 (920)
|||+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|+|||.||. ..+.++++|+ ++++.+
T Consensus 759 qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~ 838 (861)
T 4f3t_A 759 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNG 838 (861)
T ss_dssp SSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 13666766899837999999999999999865521047888776288999999999997511013567766544688766
Q ss_pred CCCCCCCCCCHHHHCCCCCEEEC
Q ss_conf 99999999710001067980329
Q 002449 898 AGPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 898 ~~~~~~~~l~~~~~~~~~~M~~~ 920 (920)
........++.+|++++++||||
T Consensus 839 ~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 839 RDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEC
T ss_conf 55355544534316551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1406.01 Aligned_cols=841 Identities=22% Similarity=0.344 Sum_probs=674.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC-------------------CEEEEEEEEEECCCCCC----------
Q ss_conf 4632356789999899878999468787850664-------------------02899876541279998----------
Q 002449 46 KVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVE-------------------GHFYHYSVSVSYEDGRP---------- 96 (920)
Q Consensus 46 ~~~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~-------------------~~~y~Y~V~i~~~~~~~---------- 96 (920)
...+.++.||||||.|++|.|+||||.+.+.... ..+|+|+|+|.++..+.
T Consensus 14 ~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~ 93 (1046)
T 4f1n_A 14 HAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQ 93 (1046)
T ss_dssp CCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC----------------
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 11354789998898996789996379985477754332211123344433354158998899756456654445667653
Q ss_pred CCCCHHHHHHHHHHHHHH--HHHCCCCCEEEECCCEEEECCCCC---CCCCEEEEEEC-----CCCCCCCCCCCCCCCCC
Q ss_conf 788134799999999987--210189854660875056437789---99615899962-----55445789999999999
Q 002449 97 VDGKGAGRKVIDRVQETY--NAELDGKDFAYDGEKSLFTVGPLP---RNKLEFTVVLE-----DISSNRNNGNASPDAHG 166 (920)
Q Consensus 97 v~~k~~~r~i~~~l~~~~--~~~~~g~~~~yDG~k~lyS~~~Lp---~~~~~~~v~l~-----~~~~~~~~~~~~~~~~~ 166 (920)
-.+++..++|+..|+++. ...+ +..+||||+++|||.++|| .....|.|... +.....- .++++-
T Consensus 94 ~~~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~---~~~~~~- 168 (1046)
T 4f1n_A 94 ELSKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAP---SNKASL- 168 (1046)
T ss_dssp -CCHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC--------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHC-CCCEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCC-
T ss_conf 221237999999999726135642-886046472216878767765357776698655334466776654---433222-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCC--H---HHHHHHHHHHHHHHHHHC-CC-CCC-CCC
Q ss_conf 999875323368889974999999733206899999862798867--3---799999999998124330-73-013-421
Q 002449 167 SPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESEN--S---QEAFRVLDIILRQHAAKQ-GC-LLV-RQS 238 (920)
Q Consensus 167 ~~~~~d~~r~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~--~---~~aiq~Ldiilr~~~~~~-~~-~~~-g~s 238 (920)
...+.. ..+.++|+|+|+++++|++.+|..|+.|+..+. . .+++++|++||++.+... +. ..+ +++
T Consensus 169 --~~~~~~----~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nk 242 (1046)
T 4f1n_A 169 --QKKIDP----ELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNK 242 (1046)
T ss_dssp ---------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTE
T ss_pred --CCCCCC----CCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf --345555----56684599999871051799999997289855443334167899999997556553589648757843
Q ss_pred CCCCCC-CCCCCCCCCEEEEECCEEEEEEECCEEEEEEECCCEEEECC-----------------CHHHHHHHHHCC---
Q ss_conf 127999-88323899689842446899970880479673230012227-----------------508999997239---
Q 002449 239 FFHNDP-KNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP-----------------GPVVDFLIANQN--- 297 (920)
Q Consensus 239 fF~~~~-~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~k~-----------------~~l~d~l~~~~~--- 297 (920)
||..+. ....+||+|+|+|+|||+|||+++++|+||||+++++|+++ ++|+|||.++++
T Consensus 243 FF~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~ 322 (1046)
T 4f1n_A 243 FFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSK 322 (1046)
T ss_dssp EEECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 04679877510378817999767666785189408997255111784666676531000135688609999999863333
Q ss_pred -----------CCCCCHHHH-------HHHHHHCCCEEEEEEECC---------------CEEEEEECCCCCCCCCCCCC
Q ss_conf -----------999870329-------999965066099964269---------------12999406876534432102
Q 002449 298 -----------VRDPFSIDW-------AKAKRTLKNLRIKTITSN---------------QEYKITGLSEKLCKEQMFSL 344 (920)
Q Consensus 298 -----------~~~~~~~~~-------~~~~~~Lkgl~V~~~~~n---------------r~~kI~gls~~~a~~~~F~~ 344 (920)
.+.+...+| .+++++||||+|+++|.+ +.++|.||+..+|.+++|.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~ 402 (1046)
T 4f1n_A 323 AIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNV 402 (1046)
T ss_dssp HHHSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEC
T ss_conf 32222223223578755665445678899999848978999866754455665244346664698634689977319961
Q ss_pred CCCCC---C-CCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf 35898---7-8988754314439899987259513579999737328999981221561488367421345899999999
Q 002449 345 KQKNV---K-DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASL 420 (920)
Q Consensus 345 ~~~~~---~-~~~~~~~~~~iTV~dYf~~~Y~i~L~y~p~lP~i~vg~~~r~~ylP~Elc~i~~~Qr~~~~ls~~q~~~l 420 (920)
+.++. + +..|+ .+.++||+|||+++|||+|+| |+||||++|++ .+|||||||.|++||+|+++|++ +++|
T Consensus 403 ~~~~~~~~~~~~~g~-~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~M 476 (1046)
T 4f1n_A 403 LESSLKKNSAPKPNE-KPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTY 476 (1046)
T ss_dssp ---------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHH
T ss_pred CCCCCCCCCCCCCCC-CCEEEEHHHHHHHHHCCCCCC-CCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHH
T ss_conf 687544456666776-752788999999873940479-99877997897--74213104796689624512351--7899
Q ss_pred HHHHCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEECCCCCC----------CCCC
Q ss_conf 98930894999999999976-----02588953344112685067025433662899310489733----------5999
Q 002449 421 VEKSRQKPQERMSVLSNALK-----LSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED----------FSPR 485 (920)
Q Consensus 421 ik~~~~~P~eR~~~i~~~l~-----~~~~~~~~~L~~~Gi~I~~~~~~v~arvL~~P~i~~g~~~~----------~~~~ 485 (920)
|++|+++|.+|++.|.+... .+.++.++.|++|| +|+.+|++|+||||+||.|+||++.. ..++
T Consensus 477 IKfAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~ 555 (1046)
T 4f1n_A 477 IDFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEES 555 (1046)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGG
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 998756949999999999887541024666557678628-7568503677887489757616875455556543445766
Q ss_pred CCCCCCCCCEEECCCC-CCEEEEEEEC-C-C-------HHHHHHHHHHHHHHHHCCCCCCCCC-CE-ECC----------
Q ss_conf 9854557831105666-4239999949-8-0-------1199999999999752395336995-20-016----------
Q 002449 486 NGRWNFNNKKLVQPTK-IERWAVVNFS-A-R-------CDIRSLVRDLIKCGEMKGILIDQPF-DV-FEE---------- 543 (920)
Q Consensus 486 ~g~Wn~~~~~f~~p~~-i~~Wavv~~~-~-~-------~~~~~f~~~L~~~~~~~G~~i~~p~-~v-~~~---------- 543 (920)
+|.||+++++|++|+. +..|+++.+. . + .++..|++.|.+.++..||.+..|. .+ ...
T Consensus 556 ~G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~ 635 (1046)
T 4f1n_A 556 KGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQG 635 (1046)
T ss_dssp TTBCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----
T ss_pred CCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78526888877137866640799997278766654238999999999999998669854787787412134554311123
Q ss_pred -CCCCCCC------------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEE
Q ss_conf -9533489------------------805779999999986499998099999179989973466888752013924567
Q 002449 544 -SPQFRRS------------------SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQC 604 (920)
Q Consensus 544 -~~~~~~~------------------~~~~~ve~~~~~i~~~~~~~p~~il~ilp~~~~~~~Y~~iK~~~~~~~gI~TQc 604 (920)
..+.+.. ......+..+..+.+.. ..++|||||||++++.++|+.||++||+++||+|||
T Consensus 636 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQc 714 (1046)
T 4f1n_A 636 GGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSC 714 (1046)
T ss_dssp ------------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 3433323333333333333444432111231799999999745-899789999668887168999999761357814489
Q ss_pred EECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 4024---455467889898876516995423443579998843----588879999983149999999882999997058
Q 002449 605 MAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIV----SKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRH 677 (920)
Q Consensus 605 i~~~---k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~----~~~~tmIiG~DVsH~~~~~~~~pSiaavV~S~d 677 (920)
|..+ +.++||++||+||||+||||+||.+... .++++ +..+|||||+||+|++++ +.+||+|+|||+|
T Consensus 715 v~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d 789 (1046)
T 4f1n_A 715 VVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD 789 (1046)
T ss_dssp EEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS
T ss_pred EEHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCC---CCCCCCCCCCCCCEEEEEEEEECCCCC--CCCEEEEEEEEEC
T ss_conf 84235135427899999999998609851143665---443234445677349985311117989--9872669999987
Q ss_pred CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8963217789998057-630022322234686258999999999998619999945999506889367999999999999
Q 002449 678 WPLISRYRAAVRTQSP-KVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQI 756 (920)
Q Consensus 678 ~~~~~~y~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~v~~~Ei~~i 756 (920)
+ .+++|.++++.|.+ ++|+|++|. +|+.++|..|++.+++.+|++|||||||||||||.+|+++|+++|
T Consensus 790 ~-~~t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~I 859 (1046)
T 4f1n_A 790 D-KFTQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSI 859 (1046)
T ss_dssp S-SCCCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHH
T ss_pred C-CCCEEEEEEEEECCCCCCHHHHHH---------HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9-858583599984588724898899---------999999999998637999857999806876577899999999999
Q ss_pred HHHHHHHC------CCCCCCEEEEEEEECCCCCEECCCC--------------CCCCCCCCEEECCCCCCCCCCEEEEEC
Q ss_conf 99999715------8999809999994244330214899--------------999999116505555686221796002
Q 002449 757 IEACKFLD------EKWSPKFAVIVAQKNHHTKFFQSGS--------------PDNVPPGTVVDNKVCHPRNYDFYLCAH 816 (920)
Q Consensus 757 ~~a~~~~~------~~~~Pkit~Ivv~Krh~~Rff~~~~--------------~~N~~pGTvVD~~i~~p~~~dFyL~sh 816 (920)
++||..+. .+|+|+||||||+||||+|||+.+. .+|++||||||++||+|.+||||||||
T Consensus 860 k~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh 939 (1046)
T 4f1n_A 860 KESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSH 939 (1046)
T ss_dssp HHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECS
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECC
T ss_conf 99999854300345577987799999657642351145554333344323456679999728646645667412899703
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCC-CCCCCCCCC
Q ss_conf 58775546732699946999998899999999640012346987787657899999997412242--368-888766679
Q 002449 817 AGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK--FDD-LSETSSSQG 893 (920)
Q Consensus 817 ~~~~GTarPthY~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~A~r~~~~l~--~~~-~~~~~s~~~ 893 (920)
.++|||+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|+|||+|++ |++ .+|++++++
T Consensus 940 ~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~ 1019 (1046)
T 4f1n_A 940 QALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKG 1019 (1046)
T ss_dssp CCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC-----
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 34777665737999967999998999999999865533517886255789999999999999998641202222455667
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCEEEC
Q ss_conf 998899999999710001067980329
Q 002449 894 GMTSAGPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 894 ~~~~~~~~~~~~l~~~~~~~~~~M~~~ 920 (920)
+.++....++++||+||++++++||||
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1020 SKDQPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -----CCCHHHHSCCCCGGGTTSCTTC
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf 766555676654511335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=811.18 Aligned_cols=652 Identities=16% Similarity=0.174 Sum_probs=486.8
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEEE
Q ss_conf 94687878506640289987654127999878813479999999998721018985466087505643778999615899
Q 002449 67 LTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTV 146 (920)
Q Consensus 67 ~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~lyS~~~Lp~~~~~~~v 146 (920)
+.|.|+++..+.+..|-- +.+ ..++. |..--++-|+++-. .+-..|-.+.-.|..++...+.+-..
T Consensus 6 ~~~~~~~~~~~~~~~~~~----~~~--~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTV----FKP--THEIQ-KEKLNKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTLYLT- 71 (706)
T ss_dssp EESEEEEEECCSSCEEBC----CEE--SSCCC-HHHHHHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCCEEE-
T ss_pred HHHHHEEEECCCCCEEEE----ECC--HHHHH-HHHHHHEEEEEEEE------CCCCCCCCCCCCEECCCCCCCEEEEE-
T ss_conf 535442551367733676----345--07887-87641201476510------17865201531034352013248998-
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 96255445789999999999999875323368889974999999733206899999862798867379999999999812
Q 002449 147 VLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQH 226 (920)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~aiq~Ldiilr~~ 226 (920)
.. .+. +|+|++++++.. .|. ....+++|+++.+|+..
T Consensus 72 -~~-------------------------------~~~--~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~ 108 (706)
T 1yvu_A 72 -LS-------------------------------NGE--IVELKRVGEEEF-------RGF--QNERECQELFRDFLTKT 108 (706)
T ss_dssp -EC-------------------------------SSS--CEEEEECCCEEC-------CCC--SCHHHHHHHHHHHHHHT
T ss_pred -CC-------------------------------CCC--EEEEEEEEEEEC-------CCC--CCCHHHHHHHHHHHHHC
T ss_conf -17-------------------------------997--899999988615-------678--99989999999999975
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCEEEEEEEC-CEEEEEEECCCEEEECCCHHHHHHHHHCCCCCCCHH
Q ss_conf 43307301342112799988323-8996898424468999708-804796732300122275089999972399998703
Q 002449 227 AAKQGCLLVRQSFFHNDPKNFAD-VGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSI 304 (920)
Q Consensus 227 ~~~~~~~~~g~sfF~~~~~~~~~-l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~~~f~k~~~l~d~l~~~~~~~~~~~~ 304 (920)
+....++||.||++..+...+ -..++|+|+||.+||+..+ ++++||+|++++ |.+..+|+|+|.++... +
T Consensus 109 --~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~~~~--~--- 180 (706)
T 1yvu_A 109 --KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLERNDFN--P--- 180 (706)
T ss_dssp --CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHHCCCC--C---
T ss_pred --CCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHHHHHC--C---
T ss_conf --774755172445833562056778767981686889885267875999973404-55665399999972304--6---
Q ss_pred HHHHHHHHCCCEEEEEEECCCEE--EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCC-------
Q ss_conf 29999965066099964269129--99406-876534432102358987898875431443989998725951-------
Q 002449 305 DWAKAKRTLKNLRIKTITSNQEY--KITGL-SEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID------- 374 (920)
Q Consensus 305 ~~~~~~~~Lkgl~V~~~~~nr~~--kI~gl-s~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~dYf~~~Y~i~------- 374 (920)
-.+..+|+|+.| +|.++ .+...+..+|.. + .++| ||+++|++.
T Consensus 181 -----------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~~-g------------~~iS---Yyk~~~~~~q~ll~~r 233 (706)
T 1yvu_A 181 -----------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRL-C------------MERS---THKSSKKAWEELLKNR 233 (706)
T ss_dssp -----------TTCEEEETTCCCCEEEEEEEESTTSCHHHHHH-H------------HHTC---SSHHHHHHHHHHHHCH
T ss_pred -----------HHHHHHCCCCEECCCCCCCCCCCCCCCEEECC-C------------CCCC---EEECCCCCCHHHHHCC
T ss_conf -----------56886432556333657400468895138428-9------------9755---5851467541444302
Q ss_pred -CCCCCCCCEEECCCCCC--CCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -35799997373289999--812215614883674213458999999999893089499999999997602588953344
Q 002449 375 -LRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLR 451 (920)
Q Consensus 375 -L~y~p~lP~i~vg~~~r--~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~~~~~P~eR~~~i~~~l~~~~~~~~~~L~ 451 (920)
.+. +.+|++. .+++. +.++++ ||++ .+|++.|+++|+++++++|++|++.|.++++.. ++.|+
T Consensus 234 ~~~~-~~~~~~v-~~~~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~ 299 (706)
T 1yvu_A 234 ELRE-KAFLVVL-EKGYTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALR 299 (706)
T ss_dssp HHHH-HCEEEEE-TTSCEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHH
T ss_pred CCCC-CCCEEEE-CCCCCCCCEEECC-CCCC-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHH
T ss_conf 4456-7724884-2688778644300-1213-------799999999999998259999999999999998----99999
Q ss_pred CEEEEEECCCEEEEEEECCCCCEECCCCC--CCCC-CCCCCCCCCCEEECCCCCCE---EEEEEECCCH-HHHHHHHHHH
Q ss_conf 11268506702543366289931048973--3599-99854557831105666423---9999949801-1999999999
Q 002449 452 SCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSP-RNGRWNFNNKKLVQPTKIER---WAVVNFSARC-DIRSLVRDLI 524 (920)
Q Consensus 452 ~~Gi~I~~~~~~v~arvL~~P~i~~g~~~--~~~~-~~g~Wn~~~~~f~~p~~i~~---Wavv~~~~~~-~~~~f~~~L~ 524 (920)
.|||+|+++|++|+||||++|+|.+++|. ...+ ..|.|++++ +|+.++.++. |.++ +..+. ++..|++.|.
T Consensus 300 ~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i-~~~~~~~~~~f~~~L~ 377 (706)
T 1yvu_A 300 DYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEIISVSV-YKKLEWRKEEFLKELI 377 (706)
T ss_dssp TTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC------CHHHHHHHHHH
T ss_pred HCCCEECCCEEECCCEECCCCEEECCCCCCCEECCCCCCCCCCCC-CEECCCCCCCCEEEEEE-ECCHHHHHHHHHHHHH
T ss_conf 769888886422136873895066478974302368754300037-41114325643389998-1661689999999999
Q ss_pred HHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCC-------CCCCHHHHHHHHH
Q ss_conf 9975239533699520016953348980577999999998649--999809999917998-------9973466888752
Q 002449 525 KCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL--PGAPQFLLCLLPERK-------NSDLYGPWKRKNL 595 (920)
Q Consensus 525 ~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~--~~~p~~il~ilp~~~-------~~~~Y~~iK~~~~ 595 (920)
+.|+.+||.++.|..+.... ++++.+++.+.... ...+++++||+|+ + +.++|+.||++|+
T Consensus 378 ~~~~~~G~~i~~p~~~~~~~---------~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~ 447 (706)
T 1yvu_A 378 NFLKNKGIKLKIKGKSLILA---------QTREEAKEKLIPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL 447 (706)
T ss_dssp HHHHTTTCEEEEEEEEEEEC---------SSTTHHHHHHHHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHHH
T ss_pred HHHHHCCCEECCCCCCCCCC---------HHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCCCCCCCHHHHHHHHHH
T ss_conf 99987496206874223340---------01999999999875005899589999777-444455567547999999985
Q ss_pred CCCCCEEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEE
Q ss_conf 013924567402445----5467889898876516995423443579998843588879999983149999999882999
Q 002449 596 ADFGIVTQCMAPMRV----NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAA 671 (920)
Q Consensus 596 ~~~gI~TQci~~~k~----~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmIiG~DVsH~~~~~~~~pSiaa 671 (920)
+.||+||||..+++ +.|++.||++|||+||||+||.++. + ...+|||||+||+|++.++ ..||++|
T Consensus 448 -~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g 517 (706)
T 1yvu_A 448 -KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVA 517 (706)
T ss_dssp -HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEE
T ss_pred -CCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECC------C--CCCCEEEEEEEEECCCCCC-CCCEEEE
T ss_conf -2898549980102166530789999999999984986156025------8--8885599999886168788-8856999
Q ss_pred EEEECCC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9970588-963217789998057630022322234686258999999999998619999945999506889367999999
Q 002449 672 VVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLN 750 (920)
Q Consensus 672 vV~S~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~v~~ 750 (920)
+|+|+|. ..+++|.+....|. ++|++++ ++..+|..| +++++.+|++|||||||||| +
T Consensus 518 ~vas~d~~g~~~~~~~~~~~q~-~~ei~~~------------l~~~~l~~~-~~~~~~~P~rIIiyRDGVse-------~ 576 (706)
T 1yvu_A 518 FTKIFNSKGELVRYYLTSYPAF-GEKLTEK------------AIGDVFSLL-EKLGFKKGSKIVVHRDGRLY-------R 576 (706)
T ss_dssp EEEEECTTSCEEEEEEEEECSC-TTHHHHH------------HHHHHHHHH-HHTTCCTTCEEEEEESSCCC-------H
T ss_pred EEEEECCCCCEEEEEEEECCCC-CCHHHHH------------HHHHHHHHH-HHHCCCCCCEEEEEECCCCC-------H
T ss_conf 9999858998899998733666-4269999------------999999999-98649998379999688885-------8
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCEEEEECCC-CCCCCCCCEEE
Q ss_conf 99999999999715899980999999424433021489999999911650555568622179600258-77554673269
Q 002449 751 VELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAG-MIGTSRPTHYH 829 (920)
Q Consensus 751 ~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~-~~GTarPthY~ 829 (920)
+|+++|++||.. |.|++|||+|+||||+|||+.+ ||+||||||. ..+||||++|.+ +|||+|||||+
T Consensus 577 ~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~---np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~ 644 (706)
T 1yvu_A 577 DEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE---KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVR 644 (706)
T ss_dssp HHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC---SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEE
T ss_pred HHHHHHHHHHHH----CCCCEEEEEEEECCCEEEECCC---CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 999999999997----2994799999704671587889---9997389972-----797699994477667887887999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9946999998899999999640012346987787657899999997412242
Q 002449 830 VLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK 881 (920)
Q Consensus 830 Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~A~r~~~~l~ 881 (920)
|+++|. ++|+||++||+|||+|+||+++||+|||+||||++|+|++.++.
T Consensus 645 vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 645 KVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp EEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred EEECCC--CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 991899--99999999999898601648996047589999999999974278
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=792.52 Aligned_cols=404 Identities=30% Similarity=0.484 Sum_probs=341.8
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 57831105-666423999994980---11999999999997523953369952001695334898057799999999864
Q 002449 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (920)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~ 566 (920)
+++++|++ ++++++|++++++.+ ..++.|++.|.+.++.+||.+..|....... .+.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC---CCCCHHHHH--HHHHHHCC
T ss_conf 9888862699727779999912777879999999999999987697717998764103---778658887--99875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999809999917998997346688875201392456740244---5546--7889898876516995423443579998
Q 002449 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (920)
Q Consensus 567 ~~~~p~~il~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~~~ 641 (920)
..++|+|||+|+ ++.++|..||++|+++.||+||||..++ .++| |++||+||||+||||+||.++. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCCEEEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898389999788-98348999999870156854189726672476628999999999999984992402366----64
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8435888799999831499---99--999882999997058896321778999805-76300223222346862589999
Q 002449 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (920)
Q Consensus 642 p~~~~~~tmIiG~DVsH~~---~~--~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~i~ 715 (920)
|++.+.+|||||+||+||+ +| ....|||+|+|||+|. ..++|.+.++.|. +++|+|++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHH---------HHHHH
T ss_conf 545778779998887525655677767899979999873499-96744027898677644489999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCEECCCC---
Q ss_conf 99999998--61999994599950688936799999999999999999715899-9809999994244330214899---
Q 002449 716 ELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKNHHTKFFQSGS--- 789 (920)
Q Consensus 716 e~L~~f~~--~~~~~~P~~IIiyRDGvsegqf~~v~~~Ei~~i~~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~--- 789 (920)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||..+..+| +|+||||||+||||+|||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCCC
T ss_conf 99999986554337998638999177566779999999999999999985043679877999997145532546775433
Q ss_pred ---CCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ---9999991165055556862217960025877554673269994699------9998899999999640012346987
Q 002449 790 ---PDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEI------GFSSDELQELVHSLSYVYQRSTTAI 860 (920)
Q Consensus 790 ---~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~~GTarPthY~Vl~de~------~~~~d~lq~lt~~Lc~~y~r~t~sv 860 (920)
.+|++||||||++||+|.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+|||++|
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sV 379 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAV 379 (437)
T ss_dssp ----------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC--------
T ss_pred CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44668999855715644677773289973312104687638999937854323579998999999999877520315887
Q ss_pred CCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEC
Q ss_conf 787657899999997412242--368888766679998899999999710001067980329
Q 002449 861 SVVAPICYAHLAASQVGSFMK--FDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 861 siPaP~~YA~~~A~r~~~~l~--~~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~M~~~ 920 (920)
|+|||+||||++|+|||.||. +++ ++++|++++. +..+...++++|++++++||||
T Consensus 380 sipaP~yYAh~~a~R~r~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 380 SICPPAYYADLVCDRARIHQKELFDA-LDENDSVKTD---DFARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp --CHHHHHHHHHHHHHHHHCHHHHHH-HHHTSCCCHH---HHHHHHHHTSCCGGGTTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCC---CCCCCCCCCCCCHHHCCCCEEC
T ss_conf 74878999999999999874541157-7777766777---7432223466597663783569
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=762.99 Aligned_cols=667 Identities=14% Similarity=0.125 Sum_probs=486.7
Q ss_pred EEEEEEEEEEEEEC-CCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCE--EEECCCCCC
Q ss_conf 78999468787850-664028998765412799987881347999999999872101898546608750--564377899
Q 002449 63 RISLLTNHFKVNVT-NVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKS--LFTVGPLPR 139 (920)
Q Consensus 63 ~i~L~tN~f~v~~~-~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~--lyS~~~Lp~ 139 (920)
+..|.+|||++... .++ .+|||+|++ +|+++.+ ....++..+... + | .++|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEEC----CCHHHHH-HHHHHHHHHHHH----C-C-CEEECCC-CEEEECCCEECC
T ss_conf 069994068873246887-059998623----8758889-999899987865----3-7-1896475-203222532146
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 96158999625544578999999999999987532336888997499999973320689999986279886737999999
Q 002449 140 NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVL 219 (920)
Q Consensus 140 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~aiq~L 219 (920)
+ +..+.|+++.+++++ +|++
T Consensus 70 ~-----------------------------------------~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 E-----------------------------------------GEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp S-----------------------------------------SCCEEEEEECGGGSC-------------------HHHH
T ss_pred C-----------------------------------------CCEEEEEEEECCEEC-------------------HHHH
T ss_conf 8-----------------------------------------973789999904402-------------------9999
Q ss_pred HHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCEEEEEEECCCEEEECCCHHHHHHHH
Q ss_conf 999981243307-----301342112799988323899689842446899970880479673230012227508999997
Q 002449 220 DIILRQHAAKQG-----CLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (920)
Q Consensus 220 diilr~~~~~~~-----~~~~g~sfF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~f~k~~~l~d~l~~ 294 (920)
|+++|..+...+ ...+||+||++ . .+ +..++|.|+.+|||..+++++|++|+++++ .+..+|+|++.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~--~---~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKP--K---TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCC--E---EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCC--C---CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHH
T ss_conf 9999999987462058899976620798--3---34-662799873466885378438999866567-555679999999
Q ss_pred HCCCCCCCHHHHHHHHHHCCCEEEEEE--------E--CCCEEEEEECCCCCCCCC--CC---CCCCCCCCCCCCCCCCE
Q ss_conf 239999870329999965066099964--------2--691299940687653443--21---02358987898875431
Q 002449 295 NQNVRDPFSIDWAKAKRTLKNLRIKTI--------T--SNQEYKITGLSEKLCKEQ--MF---SLKQKNVKDDDGEVQEL 359 (920)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~~~--------~--~nr~~kI~gls~~~a~~~--~F---~~~~~~~~~~~~~~~~~ 359 (920)
+.+ ...+..+...|.-|.+. | +++.|++.. .++..+.. +| ..+.+- .
T Consensus 163 ~~~-------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~----------~ 224 (771)
T 1u04_A 163 DPK-------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYW----------N 224 (771)
T ss_dssp CHH-------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHC----------C
T ss_pred HHH-------HHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCC-CCCCCCCCHHHEECEEECCCC----------C
T ss_conf 999-------9998887356737853113444268604662441588-512378985440130213778----------8
Q ss_pred EEEHHHHHHHHCCCCCCCCCCCCEEECCC-------CCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 44398999872595135799997373289-------99981221561488367421345899999999989308949999
Q 002449 360 EITVYDYFVNNRNIDLRYSGDLPCINVGK-------PKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERM 432 (920)
Q Consensus 360 ~iTV~dYf~~~Y~i~L~y~p~lP~i~vg~-------~~r~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~~~~~P~eR~ 432 (920)
++++.+||.++|+| ++ .+||++.... ..+.+||.||||.++|. .-+++....++|..+++..|++|.
T Consensus 225 ~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~ 298 (771)
T 1u04_A 225 TPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERK 298 (771)
T ss_dssp SHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHH
T ss_pred CCCHHHHHHHHCCC--CC-CCCCEEEECCHHHCCCCCCCEEEECHHHHHHCCC---HHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 74116878876486--76-7887698514432467889603642476533674---356668999999998777989999
Q ss_pred HHHHHHHHHC-----CCC--CCCCCCCEEEEEECCCEEEEEEECCCCCEECCCCCCCCCCCCCCC--CCCCEEECCCC--
Q ss_conf 9999997602-----588--953344112685067025433662899310489733599998545--57831105666--
Q 002449 433 SVLSNALKLS-----KYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWN--FNNKKLVQPTK-- 501 (920)
Q Consensus 433 ~~i~~~l~~~-----~~~--~~~~L~~~Gi~I~~~~~~v~arvL~~P~i~~g~~~~~~~~~g~Wn--~~~~~f~~p~~-- 501 (920)
..|.++++++ +-+ ....|+.|| .++.. ..|.++++.+-.+.+++ ......+.|. +++.+++.+..
T Consensus 299 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p 374 (771)
T 1u04_A 299 ELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVP 374 (771)
T ss_dssp HHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCC-CCCCCCCCCCCCEEECC--CCCCCCCCCCHHHCCCCCEECCCCH
T ss_conf 99999999861544307988999975554-11767-50025456645326327--6777667760553778511046542
Q ss_pred --CC------EEEEEEECCCHHHHHHH---------HHHHHHHHHCCCC---------CCCCCCEECCCCC-CC-CCCCH
Q ss_conf --42------39999949801199999---------9999997523953---------3699520016953-34-89805
Q 002449 502 --IE------RWAVVNFSARCDIRSLV---------RDLIKCGEMKGIL---------IDQPFDVFEESPQ-FR-RSSPV 553 (920)
Q Consensus 502 --i~------~Wavv~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~p~~v~~~~~~-~~-~~~~~ 553 (920)
++ .|.+++-.....+++|+ +.|.+.+..+|+. ++.|..-+...+. .. .....
T Consensus 375 ~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~ 454 (771)
T 1u04_A 375 EKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSD 454 (771)
T ss_dssp THHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSH
T ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 65504355535999957716889988888766677899998753223101103566422578733346751431565534
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC------------HHHHHHHHH
Q ss_conf 77999999998649-99980999991799899734668887520139245674024455------------467889898
Q 002449 554 VRVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVN------------DQYLTNVLL 620 (920)
Q Consensus 554 ~~ve~~~~~i~~~~-~~~p~~il~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~------------~q~~~Ni~l 620 (920)
++++.+++.+.+.+ +..++|++++++..++.+.|+.||+.| .+.||+||||..+++. .+++.||++
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 779999999997515789878999975898866689999998-5489663998435006765443323132899999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 87651699542344357999884358887999998314999999988299999705889632177899980576300223
Q 002449 621 KINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDS 700 (920)
Q Consensus 621 KiNaKLGG~n~~l~~~~~~~~p~~~~~~tmIiG~DVsH~~~~~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~~~~E~i~~ 700 (920)
|||+||||+||.|+. | ..+|||||+||+|+++++ ..++++|+|+|.++ ...+|.+....|.++ |+++
T Consensus 534 qIn~KLGG~pW~L~~------p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~- 600 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD- 600 (771)
T ss_dssp HHHHHTTCBCCEESC------C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-
T ss_pred HHHHHHCCCCEEECC------C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CEEEEEEEEEECCCC-CEEC-
T ss_conf 999985983326068------9---998799999987479899-74699999977999-789998887303776-3773-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 22234686258999999999998619999945999506889367999999999999999997158999809999994244
Q 002449 701 LFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNH 780 (920)
Q Consensus 701 l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGvsegqf~~v~~~Ei~~i~~a~~~~~~~~~Pkit~Ivv~Krh 780 (920)
+ +.|++++|.+|++.+++.+|+||||||||+ |+++|+++|++||... .|++|||+|+|||
T Consensus 601 l---------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh 660 (771)
T 1u04_A 601 M---------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNH 660 (771)
T ss_dssp H---------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCC
T ss_pred H---------HHHHHHHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECC
T ss_conf 9---------999999999999970799997799991888-------8789999999999855----9988999999457
Q ss_pred CCCEECCCCCCCCCCCCEEECCCCCCCCCCEEEEECC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHHC
Q ss_conf 3302148999999991165055556862217960025--87755467326--9994699999----88999999996400
Q 002449 781 HTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHA--GMIGTSRPTHY--HVLFDEIGFS----SDELQELVHSLSYV 852 (920)
Q Consensus 781 ~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~--~~~GTarPthY--~Vl~de~~~~----~d~lq~lt~~Lc~~ 852 (920)
|+|||. |.+|||||| . ||||+||. +.|||+||+|| +|++|+++++ +|+||++||+|||+
T Consensus 661 ~tRfF~-----~~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchl 727 (771)
T 1u04_A 661 PVRAFA-----NMKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRL 727 (771)
T ss_dssp CCCBSS-----CSCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTC
T ss_pred CEEEEC-----CCCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 515646-----999804996-------8-889983454588888887899978875278878777899999999986550
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 123469-87787657899999997412242368
Q 002449 853 YQRSTT-AISVVAPICYAHLAASQVGSFMKFDD 884 (920)
Q Consensus 853 y~r~t~-svsiPaP~~YA~~~A~r~~~~l~~~~ 884 (920)
|+||++ ++|+||||||||++|.++++++++++
T Consensus 728 yyn~~~~svrvPAP~~YAhklA~lvgq~~~~~~ 760 (771)
T 1u04_A 728 NYGSISADMRLPAPVHYAHKFANAIRNEWKIKE 760 (771)
T ss_dssp CTTCSSCCCCSCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 145799996478127999999999976624576
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=653.51 Aligned_cols=361 Identities=28% Similarity=0.451 Sum_probs=302.2
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 57831105-666423999994980---11999999999997523953369952001695334898057799999999864
Q 002449 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (920)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~ 566 (920)
+++++|++ ++++++|+++++..+ ..++.|++.|.+.++.+||.+..|....... .+.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC---CCCCHHHHH--HHHHHHCC
T ss_conf 9888851699727789999902777879999999999999987697747998754103---778638785--89875045
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999809999917998997346688875201392456740244---5546--7889898876516995423443579998
Q 002449 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (920)
Q Consensus 567 ~~~~p~~il~ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~~~ 641 (920)
..++|+|||||+ ++.++|+.||++|+++.||+||||..++ .++| |++||+||||+||||+||.+.. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898299999789-98348999999871057975089834560576748999999999999971893312256----65
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8435888799999831499---99--999882999997058896321778999805-76300223222346862589999
Q 002449 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (920)
Q Consensus 642 p~~~~~~tmIiG~DVsH~~---~~--~~~~pSiaavV~S~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~i~ 715 (920)
|++.+.+|||||+||+||+ +| ....|||+|+|||+|. ..++|.+.++.|. +++|+|++| ++|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l---------~~~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF---------TDKFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH---------HHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCCCHHHHH---------HHHHH
T ss_conf 545778779998777515656777767899879998777599-97779789998688862579999---------99999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCEECCCCCCC
Q ss_conf 99999998--61999994599950688936799999999999999999715899-9809999994244330214899999
Q 002449 716 ELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKNHHTKFFQSGSPDN 792 (920)
Q Consensus 716 e~L~~f~~--~~~~~~P~~IIiyRDGvsegqf~~v~~~Ei~~i~~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~~~N 792 (920)
++|..|++ .+++.+|++|||||||||||||.+|+++|+++|++||..++.+| +|+||||||+||
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------- 286 (388)
T 2yha_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------- 286 (388)
T ss_dssp HHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-------------
T ss_conf 9999998756543789752899946867257999999999999999998514467986799996466-------------
Q ss_pred CCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9991165055556862217960025877554673269994699------9998899999999640012346987787657
Q 002449 793 VPPGTVVDNKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEI------GFSSDELQELVHSLSYVYQRSTTAISVVAPI 866 (920)
Q Consensus 793 ~~pGTvVD~~i~~p~~~dFyL~sh~~~~GTarPthY~Vl~de~------~~~~d~lq~lt~~Lc~~y~r~t~svsiPaP~ 866 (920)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||+|||+
T Consensus 287 ------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~ 336 (388)
T 2yha_A 287 ------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPA 336 (388)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHH
T ss_pred ------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf ------------------------------68826999827864334579999999999999977753325887757589
Q ss_pred HHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEC
Q ss_conf 899999997412242--368888766679998899999999710001067980329
Q 002449 867 CYAHLAASQVGSFMK--FDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 920 (920)
Q Consensus 867 ~YA~~~A~r~~~~l~--~~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~M~~~ 920 (920)
||||++|+|||.||. +++ ++++|++++ .+..+...++++|++++++||||
T Consensus 337 yYAh~~a~R~r~~l~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 337 YYADLVCDRARIHQKELFDA-LDENDSVKT---DDFARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HTTCSCCCH---HHHHHHHHHTCCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCCCCCC---CCCCCCCCCCCCCHHHCCCCEEC
T ss_conf 99999999999985541267-776666677---76433223466597763784369
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=651.10 Aligned_cols=638 Identities=15% Similarity=0.175 Sum_probs=456.7
Q ss_pred CEEEEEEEEEEEE-ECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCC
Q ss_conf 8789994687878-506640289987654127999878813479999999998721018985466087505643778999
Q 002449 62 QRISLLTNHFKVN-VTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRN 140 (920)
Q Consensus 62 ~~i~L~tN~f~v~-~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~g~~~~yDG~k~lyS~~~Lp~~ 140 (920)
..+.+.-|-|.+. +...+..+|.|.|.+.+ +.+ .+.-...+..++.. + |...+==| +.+.|-.+ |..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~----~-~~~~~~~~-~~~~~~~~-~~~ 72 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDP----PPG-REEVYPLLAQVARR----A-GGVTVRMG-DGLASWSP-PEV 72 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEES----CCC-TTTHHHHHHHHHHH----T-CSSEEEET-TEEEESSC-TTT
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCC----CCC-CCHHHHHHHHHHHH----H-CCEEEEEC-CCEECCCC-CHH
T ss_conf 5205897500345488534850589985079----988-41477899999987----3-87478632-74000467-055
Q ss_pred -CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHH---
Q ss_conf -6158999625544578999999999999987532336888997499999973320689999986279886737999---
Q 002449 141 -KLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAF--- 216 (920)
Q Consensus 141 -~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~f~V~I~~~~~i~l~~l~~~l~g~~~~~~~~ai--- 216 (920)
.+|-.|. | ..+...|.+.-.-...++...- ...+|+
T Consensus 73 ~~~~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 112 (685)
T 3ho1_A 73 LVLEGTLA---------------------------R---MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSAL 112 (685)
T ss_dssp SCCEEEEE---------------------------C---SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHH
T ss_pred HHCCCHHC---------------------------C---CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHH
T ss_conf 41022000---------------------------2---3688663653056645788986----------788999999
Q ss_pred --HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEC-CEEEEEEECCCEEEECCCHHHHHHH
Q ss_conf --9999999812433073013421127999883238996898424468999708-8047967323001222750899999
Q 002449 217 --RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLI 293 (920)
Q Consensus 217 --q~Ldiilr~~~~~~~~~~~g~sfF~~~~~~~~~l~~G~e~~~Gf~~Svr~~~-~gl~LniDvs~~~f~k~~~l~d~l~ 293 (920)
..|+-.|++. .+...-|.-.+-. .. .-|.|.|+.+|+...|.++. +++.|.||..+.. +.+-++.++|.
T Consensus 113 ~~~~~~~~~~~~---~~~~~~~~~~~~~--~~--~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~ 184 (685)
T 3ho1_A 113 ARRLLQERLRRL---EGVWVEGLAVYRR--EH--ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLA 184 (685)
T ss_dssp HHHHHHHHHHTC---SSSEEETTEEEEE--EE--EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHH
T ss_pred HHHHHHHHHHHH---HCEEECCEEEEEE--CC--CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEEE-CCHHHHHHHHH
T ss_conf 999999998765---3337764789840--68--8777438843669999987788679997403011-47644999998
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCC
Q ss_conf 72399998703299999650660999642691299940687653443210235898789887543144398999872595
Q 002449 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNI 373 (920)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~nr~~kI~gls~~~a~~~~F~~~~~~~~~~~~~~~~~~iTV~dYf~~~Y~i 373 (920)
... . |- ..|.++|+.++|+|.+++. -.++..|... .+|++||++++|.+
T Consensus 185 ~~~--------------~-~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~~--------------~~s~~~y~~~k~~~ 233 (685)
T 3ho1_A 185 QGH--------------P-LP-KRVRNAYDRRTWELLRLGE-EDPKELPLPG--------------GLSLLDYHASKGRL 233 (685)
T ss_dssp HSC--------------C-CC-SEEEESSSCCEECCCEEEC-CCTTCC--------------------CSTTTTTTTSTT
T ss_pred HCC--------------C-CC-HHHHHHCCCCEEEEEECCC-CCCHHEECCC--------------CCCHHHHHHHCCCC
T ss_conf 179--------------8-32-7776431662489863366-8933234578--------------86599997542653
Q ss_pred CCCCCCCCCEEEC-CCCC---C-----CCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1357999973732-8999---9-----81221561488367421345899999999989308949999999999760258
Q 002449 374 DLRYSGDLPCINV-GKPK---R-----PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKY 444 (920)
Q Consensus 374 ~L~y~p~lP~i~v-g~~~---r-----~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~~~~~P~eR~~~i~~~l~~~~~ 444 (920)
+. -++|.|.- .+.+ + .+||.|||| +.++ ++.+++ .++++.|++|++.+.++++.
T Consensus 234 --~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l-------~~~~~~---~~trlsP~~R~~~l~~~~~~--- 296 (685)
T 3ho1_A 234 --QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDL-------HEEEGS---LALSLPWEERRRRTREIASW--- 296 (685)
T ss_dssp --TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTTT-------SSCSSC---CCCCCCHHHHHHHHHHHHHH---
T ss_pred --CC-CCCCEEEEEECCCCCCCCCEEEEEEECHHHH-HHHH-------HHHHHH---CCCCCCHHHHHHHHHHHHHH---
T ss_conf --34-6786599995544578733244256322767-8777-------666640---62567989999999999999---
Q ss_pred CCCCCCCCEEEEEECCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-HHHHHHHHHH
Q ss_conf 895334411268506702543366289931048973359999854557831105666423999994980-1199999999
Q 002449 445 DNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-CDIRSLVRDL 523 (920)
Q Consensus 445 ~~~~~L~~~Gi~I~~~~~~v~arvL~~P~i~~g~~~~~~~~~g~Wn~~~~~f~~p~~i~~Wavv~~~~~-~~~~~f~~~L 523 (920)
+++.|||+ +.+|++++||+||||+| +|+... .+.|++.+.+|..+... .|+++++... ..+.+|++.|
T Consensus 297 ----i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~~----~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L 365 (685)
T 3ho1_A 297 ----IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRAV----SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRAL 365 (685)
T ss_dssp ----HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSBC----SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHH
T ss_pred ----HHHHCCCC-CCCCCEEEEEECCHHHH-CCCCCC----CCCHHHCCCCCEECCCC-EEEEEECCCCHHHHHHHHHHH
T ss_conf ----88853999-89711687788388995-589975----78621114753113673-599996267267899999999
Q ss_pred HHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 99975239533699520016953348980577999999998649999809999917998997346688875201392456
Q 002449 524 IKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQ 603 (920)
Q Consensus 524 ~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~p~~il~ilp~~~~~~~Y~~iK~~~~~~~gI~TQ 603 (920)
.+.++.+||.++.|... +.++. .......+++... ..+|+|+||+|+ ++.+.|+.||+.| .+.||+||
T Consensus 366 ~~va~~~G~~i~~~~~~--~~~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQ 433 (685)
T 3ho1_A 366 LRAFGASGASLRLHTLH--AHPSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQ 433 (685)
T ss_dssp HHHHHSSSSCEEEEECC--CCGGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHHCCCEECCCEEE--CCCCC-----HHHHHHHHHHHHH---CCCCEEEEEECC-CCCCHHHHHHHHH-HCCCCCCE
T ss_conf 99887679376355110--47773-----6999999998642---399889999779-9954789999998-63997638
Q ss_pred EEE-C-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEC--CCC
Q ss_conf 740-2-445546788989887651699542344357999884358887999998314999999988299999705--889
Q 002449 604 CMA-P-MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSR--HWP 679 (920)
Q Consensus 604 ci~-~-~k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmIiG~DVsH~~~~~~~~pSiaavV~S~--d~~ 679 (920)
||. . .+.+.++++||++|||+||||+||.++. | ..+|||||+||+|++. .++++++++. |.
T Consensus 434 cV~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg- 498 (685)
T 3ho1_A 434 ILNVPLREEERHRWENALLGLLAKAGLQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDG- 498 (685)
T ss_dssp EEESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC---
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECC------C---CCCEEEEEEEEECCCC-----CCCCEEEEEEECCC-
T ss_conf 9961225640719999999998873983578568------9---9986999999973898-----96123999997888-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 6321778999805763002232223468625899999999999861999994599950688-936799999999999999
Q 002449 680 LISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGV-SESQFNQVLNVELNQIIE 758 (920)
Q Consensus 680 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGv-segqf~~v~~~Ei~~i~~ 758 (920)
...+|. ..+.|.+..+.++++ ..|+.++|..|++.+ +.+|+||||||||| +|+||. +|++
T Consensus 499 ~~~~~~-~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~n-g~lP~RIIIyRDGV~se~E~~--------~I~e 559 (685)
T 3ho1_A 499 GHLLWT-LPEAQAGERIPQEVV---------WDLLEETLWAFRRKA-GRLPSRVLLLRNGRVPQDEFA--------LALE 559 (685)
T ss_dssp CCCEEE-CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHHH-SSCCSEEEEEECSSSCSGGGH--------HHHH
T ss_pred CEEEEE-EEECCCCCEECHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHH--------HHHH
T ss_conf 877767-887267858649999---------999999999999983-899848999958989989999--------9999
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEC--CCCCCCCCCCEEEEEECCCC
Q ss_conf 9997158999809999994244330214899999999116505555686221796002--58775546732699946999
Q 002449 759 ACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAH--AGMIGTSRPTHYHVLFDEIG 836 (920)
Q Consensus 759 a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh--~~~~GTarPthY~Vl~de~~ 836 (920)
||+.+ .+++|||+|+||||+|||+.+ .++.+||+++ ..+||||++| .+.+||+|||||+ +|+++
T Consensus 560 Al~~~----~~~~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~ 625 (685)
T 3ho1_A 560 ALARE----GIAYDLVSVRKSGGGRVYPVQ--GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGD 625 (685)
T ss_dssp HHHHT----TCEEEEEEEESSCCCCEEESS--SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEEC
T ss_pred HHHHC----CCCEEEEEEEECCCCEEECCC--CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCC
T ss_conf 99861----998799999916871374689--8998759980------7897899996688876678619999--89899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 998899999999640012346-987787657899999997412
Q 002449 837 FSSDELQELVHSLSYVYQRST-TAISVVAPICYAHLAASQVGS 878 (920)
Q Consensus 837 ~~~d~lq~lt~~Lc~~y~r~t-~svsiPaP~~YA~~~A~r~~~ 878 (920)
+++|+||++||+|||+|+||| +++|+||||||||++|++.+.
T Consensus 626 ~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~~r 668 (685)
T 3ho1_A 626 TPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGR 668 (685)
T ss_dssp SCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8999999999997775116899999867578999999999987
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=441.66 Aligned_cols=357 Identities=17% Similarity=0.148 Sum_probs=251.9
Q ss_pred ECCCCCEECC--CCCCC------CCCCCCCCCCCCEEECCCCC--CEEEEEEECCCHHHHHHHHHHHHHHH---HCCCCC
Q ss_conf 6289931048--97335------99998545578311056664--23999994980119999999999975---239533
Q 002449 468 VLPAPRLKFG--NGEDF------SPRNGRWNFNNKKLVQPTKI--ERWAVVNFSARCDIRSLVRDLIKCGE---MKGILI 534 (920)
Q Consensus 468 vL~~P~i~~g--~~~~~------~~~~g~Wn~~~~~f~~p~~i--~~Wavv~~~~~~~~~~f~~~L~~~~~---~~G~~i 534 (920)
-|..|.+.|+ +|+.+ .+..| +.+...+..... .+|++++...... |++.|.+... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCCEEE
T ss_conf 4478753441247973444456787899---986699746778898899997733089---9999987533128984053
Q ss_pred CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC--------CCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 69952001695334898057799999999864999980999991--------7998997346688875201392456740
Q 002449 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL--------PERKNSDLYGPWKRKNLADFGIVTQCMA 606 (920)
Q Consensus 535 ~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~p~~il~il--------p~~~~~~~Y~~iK~~~~~~~gI~TQci~ 606 (920)
..+.... ..+. +.++ +.+.+ .+++++||+ |+ ++.+.| .+|+ ++++.||+||||.
T Consensus 79 ~~~~~~~---~~y~-----~~i~---~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y-~~K~-~~~~~gvptQ~I~ 140 (427)
T 2w42_A 79 HNINISE---FIYD-----SPHF---DSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLY-YKLK-SYLINSIPSQFMR 140 (427)
T ss_dssp CSCEEEE---EECS-----SSSH---HHHHH----HHHHHHHHCCSEEEEEESS-CCHHHH-HHHH-HHHHTTSCEEEEE
T ss_pred CCCCCCH---HHHH-----HHHH---HHHCC----CCCEEEEEEECCCCCCCCC-CCCCHH-HHHH-HHHCCCCCCEEEE
T ss_conf 5776780---7899-----9999---97437----9979999997601045898-775059-9999-9867996758987
Q ss_pred CCCC---CHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEE--EEECCCCC
Q ss_conf 2445---5467-8898988765169954234435799988435888799999831499999998829999--97058896
Q 002449 607 PMRV---NDQY-LTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAV--VSSRHWPL 680 (920)
Q Consensus 607 ~~k~---~~q~-~~Ni~lKiNaKLGG~n~~l~~~~~~~~p~~~~~~tmIiG~DVsH~~~~~~~~pSiaav--V~S~d~~~ 680 (920)
.+++ +.++ +.||++|||+||||+||.|+.. .|. .+|||||+||+|++++ +++|+ |++.|.
T Consensus 141 ~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~~g-- 206 (427)
T 2w42_A 141 YDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKKDG-- 206 (427)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECTTS--
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEECCCC--
T ss_conf 3354556505699999999978738966064567----898---9869997899876999-----5799999983899--
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 321778999805763002232223468625899999999999861999994--599950688936799999999999999
Q 002449 681 ISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPE--QIIIFRDGVSESQFNQVLNVELNQIIE 758 (920)
Q Consensus 681 ~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~--~IIiyRDGvsegqf~~v~~~Ei~~i~~ 758 (920)
..+...+..|.+++|++++| ..++.++|..|+++.++.+|+ ||||| |||.++.++|+++|++
T Consensus 207 -~~~~~~~~~~~~~~E~~~~l---------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~ 270 (427)
T 2w42_A 207 -TMLWNEISPIVTSSEYLTYL---------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKE 270 (427)
T ss_dssp -CEEEEEECCCEEGGGHHHHH---------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHH
T ss_pred -CEEEEEEEECCCHHHHHHHH---------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHH
T ss_conf -78999888427706799999---------9999999999998742789982599999------2141116999999999
Q ss_pred HHHHHCC----CCCCCEEEEEEEECCC-CCEECCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCC------C---CC
Q ss_conf 9997158----9998099999942443-3021489999999911650555568622179600258775------5---46
Q 002449 759 ACKFLDE----KWSPKFAVIVAQKNHH-TKFFQSGSPDNVPPGTVVDNKVCHPRNYDFYLCAHAGMIG------T---SR 824 (920)
Q Consensus 759 a~~~~~~----~~~Pkit~Ivv~Krh~-~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~~G------T---ar 824 (920)
||..++. +++|+++||+|+|||| +|||..+..+||+||||||.+ .+|||++|.+.|+ + ++
T Consensus 271 a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~ 344 (427)
T 2w42_A 271 TVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIK 344 (427)
T ss_dssp HHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS------SSEEEEEEEC---------CEEEEE
T ss_pred HHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECC------CCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9987154434578887799999816665466547888998996499758------9808999974523656656535889
Q ss_pred CCEEEEEEC----CCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 732699946----9999-98899999999640012346987787657899999997412242368
Q 002449 825 PTHYHVLFD----EIGF-SSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDD 884 (920)
Q Consensus 825 PthY~Vl~d----e~~~-~~d~lq~lt~~Lc~~y~r~t~svsiPaP~~YA~~~A~r~~~~l~~~~ 884 (920)
||||+|++| |+++ ++|+||++||+|||+|+|+|.++|+||||||||++|.+++++..+++
T Consensus 345 Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 345 PLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp EEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 87999996687684459899999999998547656888889837650769999999865642588
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=205.72 Aligned_cols=131 Identities=20% Similarity=0.386 Sum_probs=114.3
Q ss_pred ECCCHHHHHHHHHCCC---CCCCHHH--HHHHHHHCCCEEEEEEE------CCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 2275089999972399---9987032--99999650660999642------69129994068765344321023589878
Q 002449 283 IQPGPVVDFLIANQNV---RDPFSID--WAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKD 351 (920)
Q Consensus 283 ~k~~~l~d~l~~~~~~---~~~~~~~--~~~~~~~Lkgl~V~~~~------~nr~~kI~gls~~~a~~~~F~~~~~~~~~ 351 (920)
++++||+||+.+..+. .....++ +.+++++|+|++|.++| ++|.|+|.||++.++++++|.+++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCC-----
T ss_conf 886349999999862166665575668999999974983999956877667873599810568995212897499-----
Q ss_pred CCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9887543144398999872595135799997373289999812215614883674213458999999999893089
Q 002449 352 DDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (920)
Q Consensus 352 ~~~~~~~~~iTV~dYf~~~Y~i~L~y~p~lP~i~vg~~~r~~ylP~Elc~i~~~Qr~~~~ls~~q~~~lik~~~~~ 427 (920)
.++||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+|+++|++.|+++||++++.+
T Consensus 77 -------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 -------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp -------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred -------CEEEHHHHHHHC-CCCCCC-CCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -------779899999872-997789-9987587437889758511858805895224318989999999998359
No 10
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=1.00 E-value=1 Score=204.44 Aligned_cols=124 Identities=22% Similarity=0.474 Sum_probs=110.3
Q ss_pred ECCCEEEECCCHHHHHHHHH---CCCCCCCHHHHHH--HHHHCCCEEEEEEE------CCCEEEEEECCCCCCCCCCCCC
Q ss_conf 32300122275089999972---3999987032999--99650660999642------6912999406876534432102
Q 002449 276 DVSTTMIIQPGPVVDFLIAN---QNVRDPFSIDWAK--AKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSL 344 (920)
Q Consensus 276 Dvs~~~f~k~~~l~d~l~~~---~~~~~~~~~~~~~--~~~~Lkgl~V~~~~------~nr~~kI~gls~~~a~~~~F~~ 344 (920)
+.....|++++||+|++.+. .+.+++..++|.+ +++.||||+|+++| .+|.|+|.||+..+|.+++|++
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHCEECC
T ss_conf 64544007772099999987630366786554156899999707817999668876678875998637779754268536
Q ss_pred CCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCC
Q ss_conf 358987898875431443989998725951357999973732899998122156148836742134589
Q 002449 345 KQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413 (920)
Q Consensus 345 ~~~~~~~~~~~~~~~~iTV~dYf~~~Y~i~L~y~p~lP~i~vg~~~r~~ylP~Elc~i~~~Qr~~~~ls 413 (920)
++ ++|||+|||+ +|||+|+| |+||||++|++++++|||||||.|+++|||+++|+
T Consensus 455 ~~------------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG------------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT------------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC------------EEEEHHHHHH-HCCCCCCC-CCCCEEECCCCCCCCEECCEEEEECCCCCCCCCCC
T ss_conf 99------------1888999999-71975658-99986934888788561403268648841145579
Done!