BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002450
         (920 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3 Bound To A Histone Peptide
           Containing Acetylation At Lysine 14
 pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
           Type
 pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing Acetylation At Lysine 16
 pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing N-Terminal Acetylation
           At Serine 1
          Length = 114

 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 579 YCKYC---QNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 635
           YC +C    NM ++    +   +  + GR SG  +  Q T      VK  + +   C+ C
Sbjct: 3   YCDFCLGGSNMNKKSGRPEELVSCADCGR-SGHPTCLQFTLNMTEAVKTYKWQ---CIEC 58

Query: 636 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           + C    +      +L CD C+R +H+ CL       + E P+G W C
Sbjct: 59  KSCILCGTSENDDQLLFCDDCDRGYHMYCLN----PPVAEPPEGSWSC 102


>pdb|3V43|A Chain A, Crystal Structure Of Moz
          Length = 112

 Score = 37.0 bits (84), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 584 QNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKS 643
           QN  ++   L   A+   +G  S +    ++T R    VK L  +   C  C  C     
Sbjct: 17  QNREKKPEELISCADCGNSGHPSCLKFSPELTVR----VKALRWQCIECKTCSSC--RDQ 70

Query: 644 GFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           G     +L CD C+R FH+ C        L  +PKG W C
Sbjct: 71  GKNADNMLFCDSCDRGFHMECCD----PPLTRMPKGMWIC 106


>pdb|2LN0|A Chain A, Structure Of Moz
          Length = 110

 Score = 37.0 bits (84), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 584 QNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKS 643
           QN  ++   L   A+   +G  S +    ++T R    VK L  +   C  C  C     
Sbjct: 15  QNREKKPEELISCADCGNSGHPSCLKFSPELTVR----VKALRWQCIECKTCSSC--RDQ 68

Query: 644 GFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           G     +L CD C+R FH+ C        L  +PKG W C
Sbjct: 69  GKNADNMLFCDSCDRGFHMECCD----PPLTRMPKGMWIC 104


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 37.0 bits (84), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 15/57 (26%)

Query: 632 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC--CMD 686
           C +CR     KSG     +L+CD C R +H+ CL       L+ +PKG W C  C D
Sbjct: 8   CSVCR-----KSG----QLLMCDTCSRVYHLDCLD----PPLKTIPKGMWICPRCQD 51


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
          Length = 61

 Score = 36.2 bits (82), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           I+LCD C R +H+ CL      D+ + P+GKW C
Sbjct: 23  IILCDTCPRAYHMVCLD----PDMEKAPEGKWSC 52


>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
           Yng1 Protein In Free State
 pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
           Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
          Length = 90

 Score = 35.8 bits (81), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 11/49 (22%)

Query: 645 FGPRTILLCDQ--CERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRI 690
           +GP  ++ CD   C  E FH GC+       L++ PKGKW+C  DC  I
Sbjct: 36  YGP--MVACDNPACPFEWFHYGCV------GLKQAPKGKWYCSKDCKEI 76


>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
           Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
           Recognition By The First Phd Finger Of Autoimmune
           Regulator
          Length = 66

 Score = 35.8 bits (81), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           ++ CD C R FH+ CL       LRE+P G W C
Sbjct: 20  LICCDGCPRAFHLACLSP----PLREIPSGTWRC 49


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
           Human Autoimmune Regulator (Aire) In Complex With
           Histone H3(1-20cys) Peptide
          Length = 56

 Score = 35.4 bits (80), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           ++ CD C R FH+ CL       LRE+P G W C
Sbjct: 17  LICCDGCPRAFHLACLSP----PLREIPSGTWRC 46


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 35.0 bits (79), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           +L+CD C R +H+ CL       L+ +PKG W C
Sbjct: 21  LLMCDTCSRVYHLDCLD----PPLKTIPKGMWIC 50


>pdb|1F62|A Chain A, Wstf-Phd
          Length = 51

 Score = 34.3 bits (77), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           ++LCD+C + FH+ CL+      L E+P G+W C
Sbjct: 15  LILCDECNKAFHLFCLR----PALYEVPDGEWQC 44


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
          Length = 184

 Score = 33.5 bits (75), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 542 KNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNMFERKRFLQHDANA-- 599
           +NG  ++C     E  P  F       +L++ P G+W C +C+++   K  +++D +A  
Sbjct: 11  QNGGELLC----CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL--SKPEVEYDCDAPS 64

Query: 600 --VEAGRVSGVDSVEQITKR-CIRIV 622
              E  +  G+  +  I KR C R++
Sbjct: 65  HNSEKKKTEGLVKLTPIDKRKCERLL 90



 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC--CMDCSR 689
           +L C++C + FH+ C     +  L   P G+W C  C D S+
Sbjct: 16  LLCCEKCPKVFHLSC----HVPTLTNFPSGEWICTFCRDLSK 53


>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
          Length = 92

 Score = 33.1 bits (74), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 638 CDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           C     G     +L CD C+  +H+ CL    +  L E+P+G W C
Sbjct: 19  CQVCSRGDEDDKLLFCDGCDDNYHIFCL----LPPLPEIPRGIWRC 60


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 33.1 bits (74), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 542 KNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVE 601
           +NG  ++C     E  P  F       +L S P GDW C +C+++   K  +++D + ++
Sbjct: 14  QNGGDLLC----CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI--GKPEVEYDCDNLQ 67

Query: 602 AGR----VSGVDSVEQITKRCIRIVKNL 625
             +      G+  V+Q  ++C R++  L
Sbjct: 68  HSKKGKTAQGLSPVDQ--RKCERLLLYL 93


>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
          Length = 71

 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 539 EGYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYC 583
           E   + + + C  CN  V       H EC  +  IP+G W C++C
Sbjct: 26  ESQNSNVILFCDMCNLAV-------HQECYGVPYIPEGQWLCRHC 63


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 32.0 bits (71), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           +L CD C   +H+ CL       L E+P G+W C
Sbjct: 21  LLCCDTCPSSYHIHCLN----PPLPEIPNGEWLC 50


>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
           Brpf2-Phd1 Finger
          Length = 88

 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 539 EGYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYC 583
           E   + + + C  CN  V       H EC  +  IP+G W C++C
Sbjct: 35  ESQNSNVILFCDMCNLAV-------HQECYGVPYIPEGQWLCRHC 72


>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
           Corepressor
          Length = 88

 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 10/52 (19%)

Query: 634 LCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCM 685
           +CR C        P  +++C+QCE  FH+ C     +  L+++P  +W C +
Sbjct: 27  ICRVCQ------KPGDLVMCNQCEFCFHLDC----HLPALQDVPGEEWSCSL 68


>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 226

 Score = 31.6 bits (70), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 634 LCR--GCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELP-KGKWFC 683
           LCR   C        P   L+CD+C+  FH+ CL       L  +P + +W+C
Sbjct: 171 LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD----PPLSSVPSEDEWYC 219


>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
          Length = 241

 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 634 LCR--GCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELP-KGKWFC 683
           LCR   C        P   L+CD+C+  FH+ CL       L  +P + +W+C
Sbjct: 187 LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD----PPLSSVPSEDEWYC 235


>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
           Terminal Loop Replaced By Corresponding Loop From Wstf
          Length = 61

 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 650 ILLCDQCEREFHVGCLKKHKMADLRELPKGKWFC 683
           +L CD C   +H+ CL+      L E+P G+W C
Sbjct: 21  LLCCDTCPSSYHIHCLR----PALYEVPDGEWQC 50


>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
           Finger-Bromodomain
          Length = 189

 Score = 30.4 bits (67), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 10/52 (19%)

Query: 634 LCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCM 685
           +CR C        P  +++C+QCE  FH+ C     +  L+++P  +W C +
Sbjct: 4   ICRVCQ------KPGDLVMCNQCEFCFHLDC----HLPALQDVPGEEWSCSL 45


>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
          Length = 763

 Score = 30.4 bits (67), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 33/145 (22%)

Query: 537 LLEGYKNGLGIICHCCNSEVSPSQFEAHAECASLSS-------IPQGDWYCKYCQNMFER 589
           +L  YKN  G I      E++P+Q+    E A L+S       +P   W   Y      +
Sbjct: 458 MLPSYKNFKGTI-----EELAPNQYVISGEVAILNSTTIEISELPVRTWTQTY------K 506

Query: 590 KRFLQHDANAVEAGRVSGVDSVEQITKRCIRIV------KNLEAELSGCLLCRGCDFSKS 643
           ++ L+   N  E       D  E  T   ++ V      K  EAE  G            
Sbjct: 507 EQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGL---------HK 557

Query: 644 GFGPRTILLCDQCEREFHVGCLKKH 668
            F  +T L C+      HVGCLKK+
Sbjct: 558 VFKLQTSLTCNSMVLFDHVGCLKKY 582


>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
          Length = 246

 Score = 30.0 bits (66), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 574 PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIV--KNLEAELSG 631
           P G  Y KY QN+F+   F  H        +  G+  + Q       ++  K  E  L  
Sbjct: 36  PNG-IYKKYSQNVFDIDFFYSHPEEFYRFAK-EGIFPMLQAKPNLAHVLLAKLEEKGLIE 93

Query: 632 CLLCRGCDFSKSGFGPRTIL-LCDQCEREFHVGCLKKHKMAD-LRELPKGKWFCCMDCSR 689
            ++ +  D      G + ++ L    E  + V C KK+ + D +++L       C DC  
Sbjct: 94  AVITQNIDRLHQRAGSKKVIELAGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDC-- 151

Query: 690 INSVLQNLLVQEAEKLPEFHLNAIKKYAGNS 720
            NS+++  +V   E LP+   +A+++  G S
Sbjct: 152 -NSLIRPNIVFFGENLPQ---DALREAIGLS 178


>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
           Histone H3k4me3 Peptide
          Length = 62

 Score = 29.6 bits (65), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 520 SGLP-DGTEVGYYACGQKLLEGYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDW 578
           S LP D  E  Y  C Q          G +  C N E     F  H  C  L+  P+G W
Sbjct: 2   SDLPIDPNEPTYCLCNQV-------SYGEMIGCDNDECPIEWF--HFSCVGLNHKPKGKW 52

Query: 579 YCKYCQ 584
           YC  C+
Sbjct: 53  YCPKCR 58


>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
           H3k4me3 Peptide
          Length = 62

 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 552 CNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQ 584
           C++E  P ++  H  C SL+  P+G WYC  C+
Sbjct: 27  CDNEQCPIEW-FHFSCVSLTYKPKGKWYCPKCR 58


>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
           Protein 3 (Ing3)
          Length = 70

 Score = 29.6 bits (65), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 552 CNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNMFERK 590
           C+++  P ++  H  C  L+  P+G WYC  C    +R+
Sbjct: 22  CDNQDCPIEW-FHYGCVGLTEAPKGKWYCPQCTAAMKRR 59


>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
          Length = 246

 Score = 29.3 bits (64), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 574 PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIV--KNLEAELSG 631
           P G  Y KY QN+F+   F  H        +  G+  + Q       ++  K  E  L  
Sbjct: 36  PNG-IYKKYSQNVFDIDFFYSHPEEFYRFAK-EGIFPMLQAKPNLAHVLLAKLEEKGLIE 93

Query: 632 CLLCRGCDFSKSGFGPRTIL-LCDQCEREFHVGCLKKHKMAD-LRELPKGKWFCCMDCSR 689
            ++ +  D      G + ++ L    E  + V C KK+ + D +++L       C DC  
Sbjct: 94  AVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDC-- 151

Query: 690 INSVLQNLLVQEAEKLPEFHLNAIKKYAGNS 720
            NS+++  +V   E LP+   +A+++  G S
Sbjct: 152 -NSLIRPNIVFFGENLPQ---DALREAIGLS 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,701,665
Number of Sequences: 62578
Number of extensions: 964052
Number of successful extensions: 2195
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2130
Number of HSP's gapped (non-prelim): 82
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)