Query 002450
Match_columns 920
No_of_seqs 341 out of 938
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 00:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.3 7.1E-13 1.5E-17 131.7 5.5 104 784-891 38-143 (153)
2 KOG0956 PHD finger protein AF1 99.1 6.5E-11 1.4E-15 137.1 3.4 146 538-696 14-186 (900)
3 PRK07757 acetyltransferase; Pr 98.9 2.8E-09 6.1E-14 102.5 9.4 97 793-892 46-143 (152)
4 PF13508 Acetyltransf_7: Acety 98.9 1.1E-08 2.4E-13 89.0 10.7 76 789-869 4-79 (79)
5 PF00583 Acetyltransf_1: Acety 98.9 8.1E-09 1.8E-13 88.8 9.4 74 794-868 2-83 (83)
6 PF13673 Acetyltransf_10: Acet 98.8 2.1E-08 4.5E-13 91.4 10.3 74 788-867 44-117 (117)
7 PRK10314 putative acyltransfer 98.7 4.6E-08 1E-12 96.7 9.8 81 792-873 52-135 (153)
8 PTZ00330 acetyltransferase; Pr 98.6 2E-07 4.3E-12 88.5 10.4 83 789-872 53-141 (147)
9 PLN02825 amino-acid N-acetyltr 98.6 1.8E-07 3.9E-12 109.3 11.2 88 792-881 411-499 (515)
10 PLN02706 glucosamine 6-phospha 98.6 2.6E-07 5.6E-12 88.7 10.2 82 789-871 54-143 (150)
11 PRK10146 aminoalkylphosphonic 98.6 1.8E-07 4E-12 88.4 9.0 79 791-870 50-136 (144)
12 PF13527 Acetyltransf_9: Acety 98.6 2.6E-07 5.6E-12 86.0 9.5 111 747-870 10-127 (127)
13 PRK07922 N-acetylglutamate syn 98.5 2.9E-07 6.3E-12 92.3 9.5 80 792-874 49-129 (169)
14 PRK03624 putative acetyltransf 98.5 3.1E-07 6.7E-12 85.1 8.5 84 789-874 46-132 (140)
15 cd02169 Citrate_lyase_ligase C 98.5 3.4E-07 7.4E-12 100.5 9.4 74 792-871 10-83 (297)
16 TIGR01890 N-Ac-Glu-synth amino 98.5 4.7E-07 1E-11 103.3 10.8 86 792-879 326-412 (429)
17 TIGR01575 rimI ribosomal-prote 98.5 1.1E-06 2.5E-11 80.6 11.2 79 792-872 35-116 (131)
18 KOG1244 Predicted transcriptio 98.5 4E-08 8.6E-13 104.9 1.3 52 628-690 280-331 (336)
19 TIGR02382 wecD_rffC TDP-D-fuco 98.4 1.1E-06 2.3E-11 89.1 9.9 80 792-872 103-185 (191)
20 TIGR03827 GNAT_ablB putative b 98.4 1.7E-06 3.6E-11 92.7 10.9 83 789-872 159-245 (266)
21 KOG0825 PHD Zn-finger protein 98.4 1E-07 2.2E-12 112.3 1.7 53 627-690 213-266 (1134)
22 TIGR00124 cit_ly_ligase [citra 98.4 1.3E-06 2.8E-11 97.3 9.4 81 788-874 31-111 (332)
23 PRK05279 N-acetylglutamate syn 98.3 1.5E-06 3.2E-11 99.5 10.0 84 792-877 338-422 (441)
24 PRK10975 TDP-fucosamine acetyl 98.3 2.1E-06 4.5E-11 87.0 10.0 83 788-871 102-187 (194)
25 PRK12308 bifunctional arginino 98.3 1.4E-06 3E-11 104.0 10.0 82 792-876 507-588 (614)
26 PRK09491 rimI ribosomal-protei 98.3 4.1E-06 8.8E-11 80.3 10.6 84 787-872 39-125 (146)
27 PHA00673 acetyltransferase dom 98.2 7.8E-06 1.7E-10 82.3 10.7 83 789-872 56-146 (154)
28 COG5141 PHD zinc finger-contai 98.2 4.3E-07 9.4E-12 103.1 1.3 106 544-670 208-338 (669)
29 KOG1512 PHD Zn-finger protein 98.2 4.4E-07 9.4E-12 97.6 1.2 91 533-688 266-361 (381)
30 PRK10140 putative acetyltransf 98.1 1.3E-05 2.8E-10 77.0 10.0 85 788-874 51-143 (162)
31 PRK09831 putative acyltransfer 98.1 9E-06 1.9E-10 78.6 8.2 72 792-874 57-128 (147)
32 TIGR03448 mycothiol_MshD mycot 98.1 2E-05 4.3E-10 84.1 11.3 80 790-872 48-128 (292)
33 TIGR03448 mycothiol_MshD mycot 98.1 1.5E-05 3.2E-10 85.1 9.5 86 786-872 198-288 (292)
34 PRK13688 hypothetical protein; 98.0 1.8E-05 3.9E-10 79.4 9.2 74 794-873 51-134 (156)
35 cd04301 NAT_SF N-Acyltransfera 97.9 4.2E-05 9E-10 59.9 7.6 60 792-851 3-64 (65)
36 TIGR02406 ectoine_EctA L-2,4-d 97.9 4.3E-05 9.3E-10 75.6 9.2 82 789-871 40-127 (157)
37 COG0456 RimI Acetyltransferase 97.9 3.2E-05 7E-10 75.5 7.8 76 798-874 72-156 (177)
38 KOG3139 N-acetyltransferase [G 97.9 4.7E-05 1E-09 77.0 9.0 74 799-873 68-147 (165)
39 PF13420 Acetyltransf_4: Acety 97.9 8.9E-05 1.9E-09 71.2 10.4 76 795-872 58-139 (155)
40 KOG0955 PHD finger protein BR1 97.9 6.5E-06 1.4E-10 102.2 2.6 116 532-670 220-365 (1051)
41 TIGR03103 trio_acet_GNAT GNAT- 97.8 6.5E-05 1.4E-09 88.9 10.2 84 788-872 123-217 (547)
42 TIGR01686 FkbH FkbH-like domai 97.8 8.9E-05 1.9E-09 81.7 9.7 82 787-870 230-319 (320)
43 PRK01346 hypothetical protein; 97.8 8.8E-05 1.9E-09 83.7 9.9 79 791-872 50-136 (411)
44 PF00628 PHD: PHD-finger; Int 97.8 8.3E-06 1.8E-10 66.5 1.1 50 631-689 1-50 (51)
45 KOG3396 Glucosamine-phosphate 97.7 9.5E-05 2.1E-09 73.1 7.9 83 788-871 53-143 (150)
46 KOG0383 Predicted helicase [Ge 97.7 1.5E-05 3.2E-10 95.8 2.8 89 557-688 2-92 (696)
47 PRK10514 putative acetyltransf 97.7 0.00017 3.6E-09 68.7 9.1 73 794-874 56-128 (145)
48 PRK10562 putative acetyltransf 97.7 0.00017 3.6E-09 69.5 8.8 75 792-873 52-126 (145)
49 smart00249 PHD PHD zinc finger 97.7 4.2E-05 9.2E-10 59.6 3.7 47 631-687 1-47 (47)
50 PHA01807 hypothetical protein 97.7 0.00012 2.5E-09 73.6 7.5 75 789-863 54-135 (153)
51 PF08445 FR47: FR47-like prote 97.7 0.00015 3.2E-09 65.8 7.4 74 797-872 7-82 (86)
52 PRK15130 spermidine N1-acetylt 97.6 0.00031 6.8E-09 70.2 10.0 81 790-872 59-145 (186)
53 PF13523 Acetyltransf_8: Acety 97.6 0.00041 8.8E-09 67.0 10.1 88 786-874 46-143 (152)
54 KOG4299 PHD Zn-finger protein 97.5 2.8E-05 6E-10 91.4 1.3 50 630-688 254-303 (613)
55 COG3393 Predicted acetyltransf 97.5 0.00029 6.3E-09 76.3 8.5 83 789-872 178-262 (268)
56 TIGR03585 PseH pseudaminic aci 97.5 0.00082 1.8E-08 64.5 10.5 79 793-874 56-140 (156)
57 COG2153 ElaA Predicted acyltra 97.5 0.00035 7.6E-09 69.9 7.7 81 794-875 56-139 (155)
58 KOG4443 Putative transcription 97.4 5.8E-05 1.3E-09 89.0 2.4 82 546-691 35-119 (694)
59 PF13302 Acetyltransf_3: Acety 97.4 0.00083 1.8E-08 63.0 9.7 71 796-868 66-142 (142)
60 KOG0954 PHD finger protein [Ge 97.4 4.2E-05 9.1E-10 90.8 0.7 139 540-699 282-446 (893)
61 TIGR01211 ELP3 histone acetylt 97.4 0.00041 9E-09 81.9 8.8 77 795-872 421-516 (522)
62 PF13718 GNAT_acetyltr_2: GNAT 97.4 0.001 2.3E-08 69.6 10.3 92 783-875 22-179 (196)
63 PRK10809 ribosomal-protein-S5- 97.3 0.0012 2.6E-08 66.6 9.6 83 788-872 77-166 (194)
64 COG3153 Predicted acetyltransf 97.2 0.0025 5.5E-08 65.5 11.2 136 748-903 15-155 (171)
65 PRK10151 ribosomal-protein-L7/ 97.2 0.0022 4.8E-08 63.7 9.9 78 794-873 73-156 (179)
66 COG1247 Sortase and related ac 97.1 0.0029 6.3E-08 65.0 10.0 111 784-900 48-166 (169)
67 KOG4299 PHD Zn-finger protein 97.0 0.00033 7.3E-09 82.6 2.9 50 535-586 240-305 (613)
68 PF12568 DUF3749: Acetyltransf 96.7 0.0096 2.1E-07 58.7 9.8 81 787-872 39-125 (128)
69 cd04718 BAH_plant_2 BAH, or Br 96.7 0.00076 1.7E-08 67.7 1.8 26 659-689 1-26 (148)
70 KOG0955 PHD finger protein BR1 96.4 0.0019 4.2E-08 80.9 3.5 51 628-689 218-268 (1051)
71 PF08444 Gly_acyl_tr_C: Aralky 96.4 0.0067 1.4E-07 56.5 5.7 75 792-871 3-79 (89)
72 KOG1245 Chromatin remodeling c 96.3 0.00097 2.1E-08 86.1 0.0 60 627-697 1106-1165(1404)
73 KOG3216 Diamine acetyltransfer 96.3 0.064 1.4E-06 54.6 12.5 125 740-872 13-146 (163)
74 COG5034 TNG2 Chromatin remodel 96.2 0.0024 5.2E-08 68.8 2.2 49 626-689 218-269 (271)
75 KOG1973 Chromatin remodeling p 96.1 0.0023 5E-08 70.0 1.6 36 647-689 229-267 (274)
76 COG3053 CitC Citrate lyase syn 96.1 0.019 4.1E-07 63.4 8.1 81 788-874 37-117 (352)
77 KOG1973 Chromatin remodeling p 96.0 0.003 6.5E-08 69.1 1.8 37 543-585 229-267 (274)
78 PF12746 GNAT_acetyltran: GNAT 96.0 0.04 8.7E-07 60.4 10.2 79 789-871 168-246 (265)
79 PF13831 PHD_2: PHD-finger; PD 95.9 0.0016 3.4E-08 51.0 -0.7 34 544-584 2-36 (36)
80 KOG3397 Acetyltransferases [Ge 95.9 0.017 3.8E-07 59.6 6.5 78 795-874 64-143 (225)
81 COG1670 RimL Acetyltransferase 95.8 0.05 1.1E-06 52.6 9.2 89 786-875 64-161 (187)
82 KOG0957 PHD finger protein [Ge 95.8 0.0033 7.1E-08 72.7 1.0 47 630-687 545-595 (707)
83 COG0454 WecD Histone acetyltra 95.7 0.013 2.8E-07 48.2 4.1 44 818-867 87-130 (156)
84 KOG0956 PHD finger protein AF1 95.6 0.0051 1.1E-07 73.3 1.8 49 630-689 6-56 (900)
85 cd04718 BAH_plant_2 BAH, or Br 95.6 0.0058 1.3E-07 61.5 1.7 23 564-586 3-27 (148)
86 KOG4323 Polycomb-like PHD Zn-f 95.4 0.009 1.9E-07 69.4 2.7 126 545-697 99-231 (464)
87 KOG2488 Acetyltransferase (GNA 95.4 0.045 9.8E-07 57.3 7.5 83 789-872 94-182 (202)
88 COG5141 PHD zinc finger-contai 95.4 0.0067 1.4E-07 70.1 1.4 47 630-687 194-240 (669)
89 COG2388 Predicted acetyltransf 95.0 0.083 1.8E-06 50.2 7.5 73 786-862 15-87 (99)
90 COG5034 TNG2 Chromatin remodel 95.0 0.01 2.2E-07 64.2 1.5 53 521-585 215-269 (271)
91 COG1444 Predicted P-loop ATPas 95.0 0.03 6.5E-07 68.7 5.6 59 814-874 533-593 (758)
92 PF15446 zf-PHD-like: PHD/FYVE 95.0 0.018 4E-07 59.0 3.3 22 647-668 121-142 (175)
93 PF14542 Acetyltransf_CG: GCN5 95.0 0.11 2.5E-06 46.7 7.9 67 793-863 4-70 (78)
94 KOG4144 Arylalkylamine N-acety 94.6 0.029 6.2E-07 57.2 3.3 59 813-872 102-161 (190)
95 PF00628 PHD: PHD-finger; Int 94.6 0.011 2.5E-07 48.1 0.4 36 543-585 11-50 (51)
96 KOG0957 PHD finger protein [Ge 94.0 0.017 3.8E-07 66.9 0.5 116 543-670 133-277 (707)
97 smart00258 SAND SAND domain. 93.5 0.064 1.4E-06 48.4 3.0 50 260-311 19-69 (73)
98 KOG0954 PHD finger protein [Ge 93.4 0.036 7.8E-07 66.9 1.7 50 628-688 270-319 (893)
99 PF13480 Acetyltransf_6: Acety 92.7 0.68 1.5E-05 43.3 8.8 64 788-852 71-134 (142)
100 KOG3138 Predicted N-acetyltran 92.6 0.16 3.5E-06 53.2 4.9 64 811-874 88-154 (187)
101 smart00249 PHD PHD zinc finger 92.4 0.077 1.7E-06 41.2 1.7 35 542-583 10-47 (47)
102 KOG0825 PHD Zn-finger protein 92.3 0.059 1.3E-06 65.5 1.4 33 546-584 230-264 (1134)
103 PF13831 PHD_2: PHD-finger; PD 91.4 0.047 1E-06 42.8 -0.5 33 648-687 2-35 (36)
104 PF01342 SAND: SAND domain; I 90.0 0.14 3E-06 47.0 1.2 55 255-311 18-78 (82)
105 KOG0383 Predicted helicase [Ge 89.7 0.22 4.7E-06 61.1 2.9 37 647-688 186-222 (696)
106 KOG1473 Nucleosome remodeling 89.7 0.07 1.5E-06 67.0 -1.3 113 544-688 354-477 (1414)
107 PF06852 DUF1248: Protein of u 89.7 1.8 4E-05 45.3 9.2 83 789-872 48-137 (181)
108 COG4552 Eis Predicted acetyltr 88.9 0.55 1.2E-05 53.5 5.0 83 783-872 36-127 (389)
109 PF07897 DUF1675: Protein of u 88.6 0.75 1.6E-05 51.1 5.7 69 225-297 208-283 (284)
110 COG1243 ELP3 Histone acetyltra 87.9 0.46 1E-05 55.7 3.7 65 804-872 445-509 (515)
111 KOG3234 Acetyltransferase, (GN 87.8 0.5 1.1E-05 48.6 3.5 55 814-869 71-128 (173)
112 KOG1244 Predicted transcriptio 86.8 0.28 6E-06 53.9 1.1 37 544-587 294-332 (336)
113 KOG3235 Subunit of the major N 86.6 1.7 3.8E-05 44.9 6.5 84 789-873 44-136 (193)
114 KOG1512 PHD Zn-finger protein 86.6 0.3 6.5E-06 53.9 1.2 41 537-584 320-361 (381)
115 KOG4443 Putative transcription 85.5 0.41 9E-06 57.8 1.7 97 546-668 83-181 (694)
116 COG3981 Predicted acetyltransf 84.9 1.7 3.6E-05 45.3 5.5 70 786-857 68-142 (174)
117 KOG1245 Chromatin remodeling c 79.6 0.6 1.3E-05 61.4 0.1 36 544-586 1121-1158(1404)
118 TIGR03694 exosort_acyl putativ 76.6 15 0.00032 39.9 9.5 58 811-869 110-195 (241)
119 PF02474 NodA: Nodulation prot 75.3 4.1 8.9E-05 42.7 4.6 54 811-866 84-137 (196)
120 cd04264 DUF619-NAGS DUF619 dom 74.0 6.1 0.00013 37.6 5.1 46 796-841 16-63 (99)
121 PF14446 Prok-RING_1: Prokaryo 71.5 2.8 6E-05 36.1 2.0 36 630-670 6-41 (54)
122 KOG1473 Nucleosome remodeling 70.5 2.4 5.1E-05 54.2 1.9 45 630-688 345-389 (1414)
123 TIGR03019 pepcterm_femAB FemAB 68.2 14 0.0003 41.1 7.2 80 791-871 198-280 (330)
124 COG0143 MetG Methionyl-tRNA sy 64.8 8.3 0.00018 46.8 4.9 94 630-733 143-243 (558)
125 cd04265 DUF619-NAGS-U DUF619 d 64.8 17 0.00037 34.7 6.0 41 801-841 22-63 (99)
126 PF01233 NMT: Myristoyl-CoA:pr 61.8 56 0.0012 34.1 9.4 111 727-848 22-146 (162)
127 PF01853 MOZ_SAS: MOZ/SAS fami 61.3 21 0.00045 38.0 6.4 30 814-843 82-111 (188)
128 PF13832 zf-HC5HC2H_2: PHD-zin 60.7 4.7 0.0001 38.0 1.5 32 630-669 56-89 (110)
129 PF07227 DUF1423: Protein of u 57.7 15 0.00033 43.3 5.2 65 631-699 130-204 (446)
130 PRK00756 acyltransferase NodA; 56.9 16 0.00035 38.2 4.6 48 811-859 84-131 (196)
131 KOG2535 RNA polymerase II elon 56.7 12 0.00026 43.0 4.0 66 803-872 480-547 (554)
132 KOG2747 Histone acetyltransfer 56.2 30 0.00065 40.5 7.1 98 716-836 184-284 (396)
133 PLN03238 probable histone acet 55.5 17 0.00038 40.8 4.9 28 815-842 158-185 (290)
134 COG5628 Predicted acetyltransf 55.5 46 0.001 33.4 7.2 74 790-868 39-119 (143)
135 PF15446 zf-PHD-like: PHD/FYVE 55.2 7.3 0.00016 40.6 1.9 56 632-691 2-61 (175)
136 PRK13834 putative autoinducer 53.6 80 0.0017 33.6 9.4 118 745-869 16-162 (207)
137 PF11793 FANCL_C: FANCL C-term 52.8 5 0.00011 35.7 0.3 34 631-667 4-39 (70)
138 PF13771 zf-HC5HC2H: PHD-like 51.3 7.7 0.00017 35.1 1.2 32 630-669 37-70 (90)
139 KOG4135 Predicted phosphogluco 49.3 36 0.00078 35.3 5.6 57 813-870 108-168 (185)
140 COG3818 Predicted acetyltransf 47.0 50 0.0011 33.7 6.1 54 823-876 95-152 (167)
141 PF12261 T_hemolysin: Thermost 45.1 38 0.00083 35.6 5.3 71 795-870 42-140 (179)
142 PLN03239 histone acetyltransfe 45.0 25 0.00054 40.6 4.2 27 815-841 216-242 (351)
143 PTZ00064 histone acetyltransfe 44.7 25 0.00053 42.3 4.2 27 814-840 386-412 (552)
144 KOG2036 Predicted P-loop ATPas 43.2 20 0.00043 44.7 3.2 53 765-840 590-642 (1011)
145 PF00765 Autoind_synth: Autoin 42.7 1.5E+02 0.0032 31.1 9.2 81 787-869 45-152 (182)
146 PF13901 DUF4206: Domain of un 42.5 21 0.00046 37.8 3.0 47 631-692 154-200 (202)
147 PLN00104 MYST -like histone ac 40.4 25 0.00054 41.8 3.4 23 815-837 309-331 (450)
148 KOG1298 Squalene monooxygenase 38.1 29 0.00064 40.8 3.4 190 21-247 97-320 (509)
149 PF05502 Dynactin_p62: Dynacti 37.8 25 0.00055 42.0 3.0 32 545-586 4-35 (483)
150 PF13880 Acetyltransf_13: ESCO 36.3 29 0.00064 31.4 2.5 27 815-841 8-34 (70)
151 KOG1829 Uncharacterized conser 35.7 14 0.00031 45.0 0.5 38 645-694 526-563 (580)
152 KOG1246 DNA-binding protein ju 34.6 28 0.00061 44.5 2.9 49 630-690 156-204 (904)
153 PF04377 ATE_C: Arginine-tRNA- 33.5 1.8E+02 0.0038 29.2 7.6 61 789-850 40-100 (128)
154 PRK14852 hypothetical protein; 31.5 1.3E+02 0.0029 39.2 8.0 85 789-873 76-182 (989)
155 KOG4628 Predicted E3 ubiquitin 29.5 25 0.00054 40.6 1.1 46 630-689 230-275 (348)
156 TIGR02174 CXXU_selWTH selT/sel 28.9 38 0.00081 30.2 1.9 29 40-69 39-67 (72)
157 PF04958 AstA: Arginine N-succ 27.3 83 0.0018 36.4 4.7 78 788-866 59-182 (342)
158 COG5027 SAS2 Histone acetyltra 26.0 32 0.00069 39.7 1.2 22 814-835 264-285 (395)
159 KOG1701 Focal adhesion adaptor 25.8 17 0.00037 42.7 -1.0 78 548-666 276-362 (468)
160 PF05301 Mec-17: Touch recepto 25.7 47 0.001 33.1 2.1 62 820-890 54-116 (120)
161 PF10262 Rdx: Rdx family; Int 24.7 21 0.00045 31.9 -0.4 27 41-68 42-68 (76)
162 TIGR03244 arg_catab_AstA argin 24.3 1.2E+02 0.0026 35.0 5.3 48 788-835 55-140 (336)
163 KOG1632 Uncharacterized PHD Zn 24.2 41 0.0009 38.7 1.7 45 649-695 74-118 (345)
164 TIGR03245 arg_AOST_alph argini 24.2 1.1E+02 0.0025 35.2 5.0 48 788-835 56-141 (336)
165 TIGR03243 arg_catab_AOST argin 23.8 1.2E+02 0.0026 35.1 5.1 48 788-835 55-140 (335)
166 PF07943 PBP5_C: Penicillin-bi 23.0 89 0.0019 28.0 3.3 27 796-822 62-88 (91)
167 KOG2779 N-myristoyl transferas 23.0 4.5E+02 0.0097 31.0 9.3 127 727-864 79-225 (421)
168 PRK10456 arginine succinyltran 22.6 1.2E+02 0.0026 35.1 4.9 48 788-835 57-142 (344)
169 PF08209 Sgf11: Sgf11 (transcr 21.8 29 0.00064 27.2 -0.1 25 546-570 4-29 (33)
170 PF13901 DUF4206: Domain of un 21.7 92 0.002 33.1 3.6 72 292-365 102-188 (202)
171 PF10497 zf-4CXXC_R1: Zinc-fin 21.7 29 0.00064 33.4 -0.1 53 630-690 8-70 (105)
172 PRK10001 D-alanyl-D-alanine ca 21.1 1.7E+02 0.0036 34.5 5.8 45 796-841 347-391 (400)
173 KOG4323 Polycomb-like PHD Zn-f 20.4 36 0.00079 40.6 0.3 35 545-586 184-224 (464)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.35 E-value=7.1e-13 Score=131.72 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=92.1
Q ss_pred eeCceEEEEEeeCCeEEEEEEEE-EeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 784 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 784 ~f~GfY~~VLe~~~~vVsaAslr-I~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
++..|+.+ +.+|.|||||+++ +.+.+++||+.+||+|+||++|+|..|+..++..++.+|++++|+.+. ..+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 44556655 8899999999999 889999999999999999999999999999999999999999999986 667788
Q ss_pred hccCcEEcChHHHH-HHHHhCcceeeecCc
Q 002450 863 DKFGFKKIDPELLS-IYRKRCSQLVTFKGT 891 (920)
Q Consensus 863 ~kFGF~~i~~~el~-~~~~~~~~~~~F~Gt 891 (920)
.++||+.++.++++ .+|..++.+..|+.+
T Consensus 114 ~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~ 143 (153)
T COG1246 114 AERGFTRVDKDELPEEVWSSYNFCERRSKC 143 (153)
T ss_pred HHcCCeECccccCCHHHHHHHHhhhhhhhH
Confidence 88999999999988 788777666666655
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.06 E-value=6.5e-11 Score=137.09 Aligned_cols=146 Identities=21% Similarity=0.455 Sum_probs=101.8
Q ss_pred ecceecCCCcccCCCCCccCcchhcccccccccCCCCCCCccCccch---------hhhhh--ccccccchh-hhhc---
Q 002450 538 LEGYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQ---------NMFER--KRFLQHDAN-AVEA--- 602 (920)
Q Consensus 538 L~G~ktgdGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~---------~~f~~--ek~~~~n~N-a~aa--- 602 (920)
-.||-...+||||.=|..| .+|++|+++..+|.|.|||+.|. |.+|+ ++.+.+..| .||+
T Consensus 14 ErGWaeNPLVYCDG~nCsV-----AVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVC 88 (900)
T KOG0956|consen 14 ERGWAENPLVYCDGHNCSV-----AVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVC 88 (900)
T ss_pred cCCCccCceeeecCCCcee-----eeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEE
Confidence 3699999999999644332 34999999999999999999994 44443 456665555 4775
Q ss_pred ------cccCCCChhhHHhhhhhhhhccc--cccccccccccCCCCCCCCCCCCceeecC--CCCCccccccCccCcCCc
Q 002450 603 ------GRVSGVDSVEQITKRCIRIVKNL--EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMAD 672 (920)
Q Consensus 603 ------g~i~gvD~~e~i~~RC~R~vk~~--e~e~~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p~~~~~ 672 (920)
.++..+..+|+|. ++.. +.-...||||.+.... +....+..|.|+ .|.++|||.|.+..++..
T Consensus 89 ALYIPEVrFgNV~TMEPIi------Lq~VP~dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLC 161 (900)
T KOG0956|consen 89 ALYIPEVRFGNVHTMEPII------LQDVPHDRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLC 161 (900)
T ss_pred Eeeccceeeccccccccee------eccCchhhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccce
Confidence 4566777777763 2322 2334689999875332 123456778887 788999999998876543
Q ss_pred cCCCC--CcceeecCcchhHHHHHHH
Q 002450 673 LRELP--KGKWFCCMDCSRINSVLQN 696 (920)
Q Consensus 673 L~evP--~g~WFC~~~C~~I~~~Lqk 696 (920)
-++.. +---|| -.|+.-|.+|.+
T Consensus 162 EE~gn~~dNVKYC-GYCk~HfsKlkk 186 (900)
T KOG0956|consen 162 EEEGNISDNVKYC-GYCKYHFSKLKK 186 (900)
T ss_pred eccccccccceec-hhHHHHHHHhhc
Confidence 33322 223588 599999998866
No 3
>PRK07757 acetyltransferase; Provisional
Probab=98.95 E-value=2.8e-09 Score=102.46 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=86.4
Q ss_pred EeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcCh
Q 002450 793 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 793 Le~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
+..+|++||.+.+.+.+.+.+++-.++|.|+|||+|+|+.|+..+++.+...|+.++++-.. +..+|.+ +||+.+..
T Consensus 46 ~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~~ 122 (152)
T PRK07757 46 AEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVDK 122 (152)
T ss_pred EEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEccc
Confidence 35789999999999988889999999999999999999999999999999999999876543 4678875 99999999
Q ss_pred HHHH-HHHHhCcceeeecCcc
Q 002450 873 ELLS-IYRKRCSQLVTFKGTS 892 (920)
Q Consensus 873 ~el~-~~~~~~~~~~~F~Gts 892 (920)
.+++ ++|+.|.-|+.|+.|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ 143 (152)
T PRK07757 123 EALPQKVWADCIKCPKFPNCD 143 (152)
T ss_pred ccCChhHHhcCccCCCCCCcc
Confidence 7766 8999999999999984
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.91 E-value=1.1e-08 Score=88.95 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=65.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcE
Q 002450 789 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 868 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~ 868 (920)
+.++++.++++||++.+.-.+ +.+.|..+||.|+|||||+|+.||..+++.+.. ..+++-+.+.+.++|.+ +||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcCC
Confidence 556678999999999996665 599999999999999999999999999888854 56678888899999996 9998
Q ss_pred E
Q 002450 869 K 869 (920)
Q Consensus 869 ~ 869 (920)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.90 E-value=8.1e-09 Score=88.77 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.2
Q ss_pred eeCCeEEEEEEEEEeCC-----eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhh---hHHHHHhcc
Q 002450 794 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 865 (920)
Q Consensus 794 e~~~~vVsaAslrI~G~-----~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~e---a~~~Wt~kF 865 (920)
+.+|+|||++.+++... ..+.|-.++|.++|||||+|+.|++.+++.++..|+..|++...++ +..+|.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 67899999999999865 5999999999999999999999999999999999999999887665 4588985 9
Q ss_pred CcE
Q 002450 866 GFK 868 (920)
Q Consensus 866 GF~ 868 (920)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 6
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.83 E-value=2.1e-08 Score=91.39 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCc
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 867 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 867 (920)
...+|++.+|+|||.+.++ .-++|..+.|+|+|||+|+|++|+..+++.++. |++.+.+.+...+.++|.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 3566779999999999986 345599999999999999999999999999988 9999999999999999986 998
No 7
>PRK10314 putative acyltransferase; Provisional
Probab=98.73 E-value=4.6e-08 Score=96.73 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=69.9
Q ss_pred EEeeCCeEEEEEEEEEeCC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhc-CccEEEEcChhhhHHHHHhccCcE
Q 002450 792 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFK 868 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~L-gVe~LvlpA~~ea~~~Wt~kFGF~ 868 (920)
++..++++||+|.++..+. ..++|--|||+++|||+|+|+.||.++++.++.. +...++|.|...+++||.+ |||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCE
Confidence 3456889999999876532 3688999999999999999999999999998775 7889999998889999986 9999
Q ss_pred EcChH
Q 002450 869 KIDPE 873 (920)
Q Consensus 869 ~i~~~ 873 (920)
.+++.
T Consensus 131 ~~g~~ 135 (153)
T PRK10314 131 PVTEV 135 (153)
T ss_pred ECCCc
Confidence 99874
No 8
>PTZ00330 acetyltransferase; Provisional
Probab=98.63 E-value=2e-07 Score=88.50 Aligned_cols=83 Identities=16% Similarity=0.239 Sum_probs=70.9
Q ss_pred EEEEEeeCCeEEEEEEEEEe------CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 789 YCAILTVNSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~------G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
+.++.+.+|++||.+.+.+. +...++|--+.+.|+|||+|+|+.||..+++.++..|+.++++.+...+..+|.
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34444678999999988653 223578888999999999999999999999999999999999999989999998
Q ss_pred hccCcEEcCh
Q 002450 863 DKFGFKKIDP 872 (920)
Q Consensus 863 ~kFGF~~i~~ 872 (920)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 5 99998764
No 9
>PLN02825 amino-acid N-acetyltransferase
Probab=98.60 E-value=1.8e-07 Score=109.32 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=76.1
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEc
Q 002450 792 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G-~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
|++.||+|||++++..+. .+.+||--+||+|+|||+|+|++||+++|+.++..|+++|++.+ ..+..+|. ++||...
T Consensus 411 V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~~ 488 (515)
T PLN02825 411 VVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSEC 488 (515)
T ss_pred EEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEEe
Confidence 458999999999987664 46899999999999999999999999999999999999999977 34566555 6999999
Q ss_pred ChHHHHHHHHh
Q 002450 871 DPELLSIYRKR 881 (920)
Q Consensus 871 ~~~el~~~~~~ 881 (920)
+.++|+.-++.
T Consensus 489 ~~~~lp~~~~~ 499 (515)
T PLN02825 489 SIESLPEARRK 499 (515)
T ss_pred ChhhCCHHHHh
Confidence 99998866664
No 10
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.59 E-value=2.6e-07 Score=88.73 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=68.1
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHH
Q 002450 789 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 860 (920)
Q Consensus 789 Y~~VLe~--~~~vVsaAslrI~G------~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~ 860 (920)
|.++.+. +++|||.+.+++.. ..++.+--++|.++|||||+|+.|+..+++.++.+|+++|++.+.++...+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999986432 255677779999999999999999999999999999999999988888899
Q ss_pred HHhccCcEEcC
Q 002450 861 WTDKFGFKKID 871 (920)
Q Consensus 861 Wt~kFGF~~i~ 871 (920)
|.+ +||....
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 975 9999754
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.59 E-value=1.8e-07 Score=88.45 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=67.3
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh---hhhHHHHH
Q 002450 791 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 862 (920)
Q Consensus 791 ~VLe~~~~vVsaAslrI~G-----~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~---~ea~~~Wt 862 (920)
.|++.++++||.+.++... ...++|.-++|.|+|||||+|+.||..+++.++..|...+.+.+. ..+..+|.
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 3457789999999987642 235788899999999999999999999999999999999988765 47899998
Q ss_pred hccCcEEc
Q 002450 863 DKFGFKKI 870 (920)
Q Consensus 863 ~kFGF~~i 870 (920)
+ +||...
T Consensus 130 ~-~Gf~~~ 136 (144)
T PRK10146 130 R-EGYEQS 136 (144)
T ss_pred H-cCCchh
Confidence 6 999765
No 12
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.58 E-value=2.6e-07 Score=85.96 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=79.2
Q ss_pred HHHHHHHHhhccCcccccCcCCCcchhhhccccCCCceeCceEEEEEeeCCeEEEEEEEEEe-----CC--eeeEeeeee
Q 002450 747 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 819 (920)
Q Consensus 747 La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~~r~~f~GfY~~VLe~~~~vVsaAslrI~-----G~--~vAElplvA 819 (920)
+.+..+++.++|.+-..+. ..+-|..+.-. .+ ++++...+|+|||.+.+-.+ |. .++-|=-||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~~~---~~-~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNLYG---PG-RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHHHH---TT-EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcccC---cC-cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4566778889996654442 22333332211 12 56666789999998876433 44 579999999
Q ss_pred eccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEc
Q 002450 820 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 820 T~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
|.|+|||||+++.||.++++.++..|+..+++-+ ...++|. +|||..+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 9999999999999999999999999999999877 3467886 5999864
No 13
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.55 E-value=2.9e-07 Score=92.29 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=70.2
Q ss_pred EEe-eCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEc
Q 002450 792 ILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 792 VLe-~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
+++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.|+.++++.++..|++++++... ...+|.+ +||..+
T Consensus 49 va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~~ 125 (169)
T PRK07922 49 VAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVEI 125 (169)
T ss_pred EEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEEC
Confidence 456 789999999988877788999999999999999999999999999999999999987653 4688885 999998
Q ss_pred ChHH
Q 002450 871 DPEL 874 (920)
Q Consensus 871 ~~~e 874 (920)
+...
T Consensus 126 ~~~~ 129 (169)
T PRK07922 126 DGTP 129 (169)
T ss_pred cccc
Confidence 7543
No 14
>PRK03624 putative acetyltransferase; Provisional
Probab=98.53 E-value=3.1e-07 Score=85.08 Aligned_cols=84 Identities=20% Similarity=0.148 Sum_probs=68.5
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChh---hhHHHHHhcc
Q 002450 789 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTDKF 865 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~---ea~~~Wt~kF 865 (920)
+.+++..++++||.+.+...+ +.+.+..++|.++|||||+|+.|+..+++.+..+|++++.+-+.+ .+..+|. |+
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 344557789999999887544 457788899999999999999999999999999999998776554 4778886 49
Q ss_pred CcEEcChHH
Q 002450 866 GFKKIDPEL 874 (920)
Q Consensus 866 GF~~i~~~e 874 (920)
||+..+...
T Consensus 124 GF~~~~~~~ 132 (140)
T PRK03624 124 GYEEQDRIS 132 (140)
T ss_pred CCccccEEe
Confidence 999766543
No 15
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.50 E-value=3.4e-07 Score=100.49 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=66.8
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcC
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 871 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~ 871 (920)
+.+.+|+|||++.+.- .+|..+||+|+|||||+|+.||..+++.++..|+++++|.+...+.++|. ++||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 3467799999998742 46899999999999999999999999999999999999999989999997 59999988
No 16
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.50 E-value=4.7e-07 Score=103.31 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=74.2
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEc
Q 002450 792 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G-~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
|++.++++||++.+..+. ...+||-.++|.|+|||||+|+.||..+++.++..|.+++++.+. .+..+|. ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 447889999999998873 468999999999999999999999999999999999999887754 4678886 5999999
Q ss_pred ChHHHHHHH
Q 002450 871 DPELLSIYR 879 (920)
Q Consensus 871 ~~~el~~~~ 879 (920)
+..+++.-+
T Consensus 404 g~~~l~~~~ 412 (429)
T TIGR01890 404 SVDELPEAR 412 (429)
T ss_pred ChhhCCHHH
Confidence 998866443
No 17
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.49 E-value=1.1e-06 Score=80.58 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=66.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEc---ChhhhHHHHHhccCcE
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGFK 868 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp---A~~ea~~~Wt~kFGF~ 868 (920)
++..++++||.+.++... ....+-.++|.++|||||+|+.|+.++++.+...|..++++. ....+..+|++ +||+
T Consensus 35 ~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf~ 112 (131)
T TIGR01575 35 LARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGFN 112 (131)
T ss_pred EEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCCC
Confidence 345689999999987644 456788899999999999999999999999999999999984 44557889975 9999
Q ss_pred EcCh
Q 002450 869 KIDP 872 (920)
Q Consensus 869 ~i~~ 872 (920)
.++.
T Consensus 113 ~~~~ 116 (131)
T TIGR01575 113 EIAI 116 (131)
T ss_pred cccc
Confidence 8765
No 18
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.48 E-value=4e-08 Score=104.87 Aligned_cols=52 Identities=33% Similarity=0.841 Sum_probs=44.3
Q ss_pred cccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhH
Q 002450 628 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 690 (920)
Q Consensus 628 e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I 690 (920)
+...|.+|+..+ +++.+|+||-|+++||++||.| ++.+.|+|.|-| .-|.+.
T Consensus 280 eck~csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 280 ECKYCSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred ecceeccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 345799998754 5789999999999999999999 788999999999 778643
No 19
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.42 E-value=1.1e-06 Score=89.12 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=68.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChh---hhHHHHHhccCcE
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTDKFGFK 868 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~---ea~~~Wt~kFGF~ 868 (920)
+.+.+|++||.+.++......+++-.+++.++|||||+|+.|+.++++.+..+|+.+|++.... .+..+|.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 3456889999999987765678999999999999999999999999999999999999987433 47889985 9998
Q ss_pred EcCh
Q 002450 869 KIDP 872 (920)
Q Consensus 869 ~i~~ 872 (920)
....
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 6543
No 20
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.38 E-value=1.7e-06 Score=92.67 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=69.3
Q ss_pred EEEEEeeCCeEEEEEEEEEe-CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhh---HHHHHhc
Q 002450 789 YCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEA---ESIWTDK 864 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~-G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea---~~~Wt~k 864 (920)
+.++++.+|++||.+++.+. +...+||--++|.|+|||||+|+.||..+++.++..|+.++++.+.... ..+|. |
T Consensus 159 ~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~-k 237 (266)
T TIGR03827 159 VYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA-R 237 (266)
T ss_pred EEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-H
Confidence 33455779999999998653 3467999999999999999999999999999999999999999877654 45675 5
Q ss_pred cCcEEcCh
Q 002450 865 FGFKKIDP 872 (920)
Q Consensus 865 FGF~~i~~ 872 (920)
+||+..+.
T Consensus 238 ~GF~~~G~ 245 (266)
T TIGR03827 238 LGYAYGGT 245 (266)
T ss_pred cCCccccE
Confidence 99997654
No 21
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.38 E-value=1e-07 Score=112.35 Aligned_cols=53 Identities=40% Similarity=0.918 Sum_probs=46.0
Q ss_pred ccccccccccCCCCCCCCCCCCceeecCCCCCc-cccccCccCcCCccCCCCCcceeecCcchhH
Q 002450 627 AELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRI 690 (920)
Q Consensus 627 ~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~-YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I 690 (920)
.+.-.|.+|..+|. .+.||+||.|..+ ||++||+| +|-++|.+.||| .+|..+
T Consensus 213 ~E~~~C~IC~~~Dp------EdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL 266 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDP------EDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLL 266 (1134)
T ss_pred cccccceeeccCCh------HHhheeecccccceeeccccCc----ccccccccceec-Ccchhh
Confidence 34568999999773 5789999999999 99999999 899999999999 899643
No 22
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.35 E-value=1.3e-06 Score=97.32 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=71.8
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCc
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 867 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 867 (920)
-|++++..+|+|||+|++ .|. .|.-|||+++|||+|+|+.||.++++.+...|+.++++.+.+.+..+|. ++||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcCC
Confidence 367777889999999997 342 4889999999999999999999999999999999999999999988876 5999
Q ss_pred EEcChHH
Q 002450 868 KKIDPEL 874 (920)
Q Consensus 868 ~~i~~~e 874 (920)
..+...+
T Consensus 105 ~~i~~~~ 111 (332)
T TIGR00124 105 KTLAEAK 111 (332)
T ss_pred EEeeeec
Confidence 9998644
No 23
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.35 E-value=1.5e-06 Score=99.51 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=72.6
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEc
Q 002450 792 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G-~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
+++.+|++||.+.+..+. ...++|--++|.|+|||||+|++||.++++.++..|+.++++.+ ..+..||. ++||..+
T Consensus 338 va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~~ 415 (441)
T PRK05279 338 VIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVPV 415 (441)
T ss_pred EEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEEC
Confidence 457889999999877653 46899999999999999999999999999999999999998765 45788887 5999999
Q ss_pred ChHHHHH
Q 002450 871 DPELLSI 877 (920)
Q Consensus 871 ~~~el~~ 877 (920)
+.++++.
T Consensus 416 g~~~~~~ 422 (441)
T PRK05279 416 DVDDLPE 422 (441)
T ss_pred ChhhCcH
Confidence 9877653
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.35 E-value=2.1e-06 Score=87.00 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=69.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh---hhhHHHHHhc
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 864 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~---~ea~~~Wt~k 864 (920)
++.++.+.+|++||.+.+...+...+++-.+++.++|||||+|+.|+..+++.++..|+.++++... +.+..+|. |
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-R 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-H
Confidence 3434445678999999998766667899999999999999999999999999999999999987644 45788887 5
Q ss_pred cCcEEcC
Q 002450 865 FGFKKID 871 (920)
Q Consensus 865 FGF~~i~ 871 (920)
+||....
T Consensus 181 ~Gf~~~~ 187 (194)
T PRK10975 181 SGANIES 187 (194)
T ss_pred CCCeEeE
Confidence 9999765
No 25
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.34 E-value=1.4e-06 Score=103.96 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=73.0
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcC
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 871 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~ 871 (920)
|++.+|+|||.+.+.+.....++|-.++|.|+|||||+|+.||+.+++.++..|++++++.+. +..||. |+||+..+
T Consensus 507 Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~~ 583 (614)
T PRK12308 507 VAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPTS 583 (614)
T ss_pred EEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEECC
Confidence 457889999999998877678999999999999999999999999999999999999988753 467887 59999999
Q ss_pred hHHHH
Q 002450 872 PELLS 876 (920)
Q Consensus 872 ~~el~ 876 (920)
..+++
T Consensus 584 ~~~~~ 588 (614)
T PRK12308 584 KSLLP 588 (614)
T ss_pred cccCC
Confidence 88765
No 26
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.31 E-value=4.1e-06 Score=80.31 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=68.9
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcC---hhhhHHHHHh
Q 002450 787 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTD 863 (920)
Q Consensus 787 GfY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA---~~ea~~~Wt~ 863 (920)
+|+..++..++++||.+.++.... .+++-.++|.++|||||+|+.|+..+++.+...|+..+++.+ -..+..+|.+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455555678899999999887653 456778899999999999999999999999999999988753 3457888875
Q ss_pred ccCcEEcCh
Q 002450 864 KFGFKKIDP 872 (920)
Q Consensus 864 kFGF~~i~~ 872 (920)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99997764
No 27
>PHA00673 acetyltransferase domain containing protein
Probab=98.22 E-value=7.8e-06 Score=82.32 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred EEEEEeeCCeEEEEEEEEEe------CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhh--hHHH
Q 002450 789 YCAILTVNSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESI 860 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~------G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~e--a~~~ 860 (920)
..+|.+.+|+|||.+.+.+. |...+.|-.|-|++++||||+|++||..+++.++..|...|.+.|.|+ .+.|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 44455779999999998875 347788999999999999999999999999999999999999999997 6999
Q ss_pred HHhccCcEEcCh
Q 002450 861 WTDKFGFKKIDP 872 (920)
Q Consensus 861 Wt~kFGF~~i~~ 872 (920)
|.+ .|++....
T Consensus 136 y~~-~g~~~~~~ 146 (154)
T PHA00673 136 LPA-AGYRETNR 146 (154)
T ss_pred HHh-CCchhhch
Confidence 996 99986543
No 28
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.20 E-value=4.3e-07 Score=103.05 Aligned_cols=106 Identities=24% Similarity=0.578 Sum_probs=69.8
Q ss_pred CCCcccCCCCCccCcchhcccccccccCCCCCCCccCccch--------hhhhhc--cccc-cchhhhhc----------
Q 002450 544 GLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQ--------NMFERK--RFLQ-HDANAVEA---------- 602 (920)
Q Consensus 544 gdGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~--------~~f~~e--k~~~-~n~Na~aa---------- 602 (920)
...++|+.|+..| |+.|+++.-+|+|.|+|+.|. |.||+. +.+. ...+.|.+
T Consensus 208 naiVfCdgC~i~V-------Hq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H~iCA~~~pel 280 (669)
T COG5141 208 NAIVFCDGCEICV-------HQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGHVICAMFNPEL 280 (669)
T ss_pred ceEEEecCcchhh-------hhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHhHhHHHhcchh
Confidence 3457899998754 999999999999999999994 456652 3332 23333432
Q ss_pred --cccCCCChhhHHhhhhhhhhccccccccccccccCCCCCCCCCCCCceeecC--CCCCccccccCccCcC
Q 002450 603 --GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKM 670 (920)
Q Consensus 603 --g~i~gvD~~e~i~~RC~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p~~~ 670 (920)
+...-.|+++.+..-. ....-..|.+|+.. .|+.+.|. .|-++||++|.+..+.
T Consensus 281 sF~~l~~~dpI~~i~sVs------~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~ 338 (669)
T COG5141 281 SFGHLLSKDPIDNIASVS------SSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGY 338 (669)
T ss_pred ccccccccchhhhhcccc------hhhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhhhcch
Confidence 2233345544432100 01112479999873 47888898 5999999999988654
No 29
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.19 E-value=4.4e-07 Score=97.58 Aligned_cols=91 Identities=30% Similarity=0.693 Sum_probs=66.9
Q ss_pred CCeeeecceecCCCcccCCCCCccCcchhcccccccccC-----CCCCCCccCccchhhhhhccccccchhhhhccccCC
Q 002450 533 CGQKLLEGYKNGLGIICHCCNSEVSPSQFEAHAECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSG 607 (920)
Q Consensus 533 ~gq~lL~G~ktgdGI~CdCCn~evcPS~FEaHa~CL~Le-----sIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~g 607 (920)
+||.-..--+....|+|.-|.. +. |-.|+.+. .+-.-.|.|-.|.
T Consensus 266 ~~~~~~~~~r~~S~I~C~~C~~-----~~--HP~Ci~M~~elv~~~KTY~W~C~~C~----------------------- 315 (381)
T KOG1512|consen 266 DIQTNIIQSRRNSWIVCKPCAT-----RP--HPYCVAMIPELVGQYKTYFWKCSSCE----------------------- 315 (381)
T ss_pred cchhhhhhhhhccceeeccccc-----CC--CCcchhcCHHHHhHHhhcchhhcccH-----------------------
Confidence 4443333335678899999954 34 88888742 2334568887774
Q ss_pred CChhhHHhhhhhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcc
Q 002450 608 VDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 687 (920)
Q Consensus 608 vD~~e~i~~RC~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C 687 (920)
.|.||+++.. ++++++||.|+++||..|+. |..+|.|.|.|-..|
T Consensus 316 -----------------------lC~IC~~P~~------E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 316 -----------------------LCRICLGPVI------ESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDMRC 360 (381)
T ss_pred -----------------------hhhccCCccc------chheeccccccCCCCccccc------cccccCccchhhhHH
Confidence 5899988652 57899999999999999994 788999999995557
Q ss_pred h
Q 002450 688 S 688 (920)
Q Consensus 688 ~ 688 (920)
.
T Consensus 361 ~ 361 (381)
T KOG1512|consen 361 R 361 (381)
T ss_pred H
Confidence 5
No 30
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.14 E-value=1.3e-05 Score=77.01 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=66.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC----CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhh-cCccEEEEcCh---hhhHH
Q 002450 788 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 859 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G----~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~-LgVe~LvlpA~---~ea~~ 859 (920)
.+.++.+.+|++||.+.+.... ...+|+- +++.++|||||+|+.|+..+++.+.. +|..++++... ..+..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3555667889999999987531 2456664 89999999999999999999999888 79888776553 45778
Q ss_pred HHHhccCcEEcChHH
Q 002450 860 IWTDKFGFKKIDPEL 874 (920)
Q Consensus 860 ~Wt~kFGF~~i~~~e 874 (920)
++. ++||+..+...
T Consensus 130 ~y~-k~GF~~~g~~~ 143 (162)
T PRK10140 130 VYK-KYGFEIEGTGK 143 (162)
T ss_pred HHH-HCCCEEEeecc
Confidence 887 59999877643
No 31
>PRK09831 putative acyltransferase; Provisional
Probab=98.11 E-value=9e-06 Score=78.64 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcC
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 871 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~ 871 (920)
|+..+|++||.+.+.- ..+..++|.|+|||||+|++||..+++.+.. +.+.+...+..+|.+ +||..++
T Consensus 57 v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~g 125 (147)
T PRK09831 57 VAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTVK 125 (147)
T ss_pred EEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEee
Confidence 4478899999988732 4567899999999999999999999998766 455566778999986 9999998
Q ss_pred hHH
Q 002450 872 PEL 874 (920)
Q Consensus 872 ~~e 874 (920)
...
T Consensus 126 ~~~ 128 (147)
T PRK09831 126 QQR 128 (147)
T ss_pred ccc
Confidence 765
No 32
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.09 E-value=2e-05 Score=84.12 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=62.8
Q ss_pred EEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh-hhhHHHHHhccCcE
Q 002450 790 CAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGFK 868 (920)
Q Consensus 790 ~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~-~ea~~~Wt~kFGF~ 868 (920)
.+|...+|++||.+.+.......+++-.++|+|+|||||+|+.||..+++.+. +--.|++... ..+..+|.+ +||.
T Consensus 48 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf~ 124 (292)
T TIGR03448 48 HLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGLV 124 (292)
T ss_pred EEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCCE
Confidence 34456789999999988875555788889999999999999999999999865 2335555543 467888875 9998
Q ss_pred EcCh
Q 002450 869 KIDP 872 (920)
Q Consensus 869 ~i~~ 872 (920)
.+..
T Consensus 125 ~~~~ 128 (292)
T TIGR03448 125 PTRE 128 (292)
T ss_pred EccE
Confidence 7754
No 33
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.06 E-value=1.5e-05 Score=85.08 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=67.9
Q ss_pred CceEEEEEeeCCeEEEEEEEEEeCC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChh---hhHHH
Q 002450 786 GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESI 860 (920)
Q Consensus 786 ~GfY~~VLe~~~~vVsaAslrI~G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~---ea~~~ 860 (920)
.++|.++-..+|++||.+.+++... ..+++-.++|.++|||||+|+.|+..+++.++..|+.++++...+ .+..+
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3556553222689999877766542 467888899999999999999999999999999999988876543 57899
Q ss_pred HHhccCcEEcCh
Q 002450 861 WTDKFGFKKIDP 872 (920)
Q Consensus 861 Wt~kFGF~~i~~ 872 (920)
|.+ +||+....
T Consensus 278 y~k-~GF~~~~~ 288 (292)
T TIGR03448 278 YEK-LGFTVAEV 288 (292)
T ss_pred HHH-cCCEEccc
Confidence 985 99997653
No 34
>PRK13688 hypothetical protein; Provisional
Probab=98.04 E-value=1.8e-05 Score=79.40 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=57.5
Q ss_pred eeCCeEEEEEEEEEe----------CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHh
Q 002450 794 TVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 863 (920)
Q Consensus 794 e~~~~vVsaAslrI~----------G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~ 863 (920)
..++++||.+.+... ..+.++|--++|.++|||||+|++||..+++. ++. +.+.+...+..+|.+
T Consensus 51 ~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~k 125 (156)
T PRK13688 51 YYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWLK 125 (156)
T ss_pred EECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHHh
Confidence 567899998887542 24678999999999999999999999876553 333 344456678899985
Q ss_pred ccCcEEcChH
Q 002450 864 KFGFKKIDPE 873 (920)
Q Consensus 864 kFGF~~i~~~ 873 (920)
+||..++..
T Consensus 126 -~GF~~~~~~ 134 (156)
T PRK13688 126 -LGFTPVEYK 134 (156)
T ss_pred -CCCEEeEEe
Confidence 999988765
No 35
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.93 E-value=4.2e-05 Score=59.94 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=54.0
Q ss_pred EEeeCCeEEEEEEEEEeC--CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEE
Q 002450 792 ILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 851 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G--~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvl 851 (920)
++..++++||.+.+.... ...+++-.++|.++|||+|+++.|+..+.+.+...|.+++++
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 346778999999988765 488999999999999999999999999999999999999875
No 36
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.92 E-value=4.3e-05 Score=75.58 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=64.2
Q ss_pred EEEEEe-eCCeEEEEEEEEE--eCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcC---hhhhHHHHH
Q 002450 789 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 862 (920)
Q Consensus 789 Y~~VLe-~~~~vVsaAslrI--~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA---~~ea~~~Wt 862 (920)
+.+|.+ .+|++||.+.+.. ...+.+.+-.+||.++|||||+|+.|+..+++.+...++.++.+.. -..+..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 344556 4679999886543 2346688889999999999999999999999999988888887654 345677887
Q ss_pred hccCcEEcC
Q 002450 863 DKFGFKKID 871 (920)
Q Consensus 863 ~kFGF~~i~ 871 (920)
+ +||+...
T Consensus 120 k-~G~~~~~ 127 (157)
T TIGR02406 120 A-LARRRGV 127 (157)
T ss_pred H-hCcccCC
Confidence 5 9998643
No 37
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.90 E-value=3.2e-05 Score=75.51 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=62.2
Q ss_pred eEEEEEEEEE-eCCe----eeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCc-cEEEEcChhh---hHHHHHhccCcE
Q 002450 798 SVVSAGILRV-FGQE----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAEE---AESIWTDKFGFK 868 (920)
Q Consensus 798 ~vVsaAslrI-~G~~----vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgV-e~LvlpA~~e---a~~~Wt~kFGF~ 868 (920)
+++|....++ .|.. -++|-.+||.|+|||+|+|++|+..+++.+...+. +.++|-.+.+ |..+|.+ +||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 5888887754 3432 78999999999999999999999999999999886 7777776653 7888875 9999
Q ss_pred EcChHH
Q 002450 869 KIDPEL 874 (920)
Q Consensus 869 ~i~~~e 874 (920)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 876544
No 38
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.90 E-value=4.7e-05 Score=77.05 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred EEEEEEEEEeC---CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChh---hhHHHHHhccCcEEcCh
Q 002450 799 VVSAGILRVFG---QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTDKFGFKKIDP 872 (920)
Q Consensus 799 vVsaAslrI~G---~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~---ea~~~Wt~kFGF~~i~~ 872 (920)
.|||+.....- ..-++|-.+||.++|||||+|++|+..+.+.+++.|...++|.+.. .|...|.+ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 47777666532 3459999999999999999999999999999999999999998765 57889986 99998654
Q ss_pred H
Q 002450 873 E 873 (920)
Q Consensus 873 ~ 873 (920)
.
T Consensus 147 ~ 147 (165)
T KOG3139|consen 147 L 147 (165)
T ss_pred e
Confidence 3
No 39
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.88 E-value=8.9e-05 Score=71.22 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=61.9
Q ss_pred eCCeEEEEEEEEEeC--CeeeEeeeeeeccCccCCChhHHHHHHHHHHh-hhcCccEEEEcCh---hhhHHHHHhccCcE
Q 002450 795 VNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAA---EEAESIWTDKFGFK 868 (920)
Q Consensus 795 ~~~~vVsaAslrI~G--~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L-~~LgVe~LvlpA~---~ea~~~Wt~kFGF~ 868 (920)
.+|++||.+.++-.. ...|++-+ -+.++||++|+|+.|+..+++.+ ..+|+++|.+-.. ..+..+|.+ +||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~-~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~-~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSI-YVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK-LGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEE-EEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-TTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEee-EEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-CCCE
Confidence 599999999998653 36788774 44499999999999999999999 9999999985433 357899986 9999
Q ss_pred EcCh
Q 002450 869 KIDP 872 (920)
Q Consensus 869 ~i~~ 872 (920)
....
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 40
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.86 E-value=6.5e-06 Score=102.15 Aligned_cols=116 Identities=26% Similarity=0.568 Sum_probs=76.9
Q ss_pred eCCeeeecceec--CCCcccCCCCCccCcchhcccccccccCCCCCCCccCccchh--------hhhh--cccccc-chh
Q 002450 532 ACGQKLLEGYKN--GLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQN--------MFER--KRFLQH-DAN 598 (920)
Q Consensus 532 ~~gq~lL~G~kt--gdGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~--------~f~~--ek~~~~-n~N 598 (920)
....+.++|-.+ ..-++||.||..| |+.|+++.-||+|.|+|..|.. .+|+ ++.+.+ ...
T Consensus 220 ~~C~iC~~~~~~n~n~ivfCD~Cnl~V-------Hq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dg 292 (1051)
T KOG0955|consen 220 AVCCICLDGECQNSNVIVFCDGCNLAV-------HQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDG 292 (1051)
T ss_pred ccceeecccccCCCceEEEcCCCcchh-------hhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCC
Confidence 356788899888 7778999999854 9999999999999999999952 2332 233222 222
Q ss_pred hhhcc---------------ccCCCChhhHHhhhhhhhhccccccccccccccCCCCCCCCCCCCceeecC--CCCCccc
Q 002450 599 AVEAG---------------RVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFH 661 (920)
Q Consensus 599 a~aag---------------~i~gvD~~e~i~~RC~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YH 661 (920)
.|++. .+++++.++.|..-.+ .-.|++|+.. +.+..+.|. .|-.+||
T Consensus 293 rw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRw---------kL~cy~cK~~-------~~gaciqcs~~~c~~a~h 356 (1051)
T KOG0955|consen 293 RWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARW---------KLTCYICKQK-------GLGACIQCSKANCYTAFH 356 (1051)
T ss_pred ceeeeehhhcccccccccchhhccccchhcCcHhhh---------hceeeeeccC-------CCCcceecchhhhhhhhh
Confidence 34321 1333444333321111 2479999873 236677777 5788999
Q ss_pred cccCccCcC
Q 002450 662 VGCLKKHKM 670 (920)
Q Consensus 662 v~CL~p~~~ 670 (920)
++|.+..+.
T Consensus 357 vtca~~agl 365 (1051)
T KOG0955|consen 357 VTCARRAGL 365 (1051)
T ss_pred hhhHhhcCc
Confidence 999988653
No 41
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.83 E-value=6.5e-05 Score=88.89 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=65.7
Q ss_pred eEEEEEee--CCeEEEEEEEEEe------CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh---hh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EE 856 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~------G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~---~e 856 (920)
.+.+|.+. +|+|||.+..-.+ ....++|--++|.|+|||||+|++||..+++.++..|+.++++... ..
T Consensus 123 ~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~ 202 (547)
T TIGR03103 123 ITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQ 202 (547)
T ss_pred ceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHH
Confidence 34444453 6899999875322 2234788889999999999999999999999999999999876533 56
Q ss_pred hHHHHHhccCcEEcCh
Q 002450 857 AESIWTDKFGFKKIDP 872 (920)
Q Consensus 857 a~~~Wt~kFGF~~i~~ 872 (920)
+..+|.+ +||..++.
T Consensus 203 Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 203 AIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHH-CCCEEeeE
Confidence 8899975 99987643
No 42
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.78 E-value=8.9e-05 Score=81.70 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=68.3
Q ss_pred ceEEEEEee---CCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh-----hhhH
Q 002450 787 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAE 858 (920)
Q Consensus 787 GfY~~VLe~---~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~-----~ea~ 858 (920)
..|++.+.. ++.+||.+.++..+ +.++|-.+++++.|||+|+|++||.++++.++..|+.+|++... ..+.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 356665543 57899999988754 67899999999999999999999999999999999999988543 3688
Q ss_pred HHHHhccCcEEc
Q 002450 859 SIWTDKFGFKKI 870 (920)
Q Consensus 859 ~~Wt~kFGF~~i 870 (920)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99975 999854
No 43
>PRK01346 hypothetical protein; Provisional
Probab=97.78 E-value=8.8e-05 Score=83.67 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=65.0
Q ss_pred EEEeeCCeEEEEEEEEEe------CC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 791 AILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 791 ~VLe~~~~vVsaAslrI~------G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
++...+|++||.+.+..+ |. ..+.|-.|+|.|+|||||+|++||..+++.++..|+..++|.+.. ..+|.
T Consensus 50 ~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~ 127 (411)
T PRK01346 50 LGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYG 127 (411)
T ss_pred EEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHh
Confidence 444678999998887532 32 578899999999999999999999999999999999888887654 46787
Q ss_pred hccCcEEcCh
Q 002450 863 DKFGFKKIDP 872 (920)
Q Consensus 863 ~kFGF~~i~~ 872 (920)
+ |||.....
T Consensus 128 r-~Gf~~~~~ 136 (411)
T PRK01346 128 R-FGYGPATY 136 (411)
T ss_pred h-CCCeeccc
Confidence 5 99987654
No 44
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.77 E-value=8.3e-06 Score=66.53 Aligned_cols=50 Identities=30% Similarity=0.887 Sum_probs=37.6
Q ss_pred ccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 631 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 631 ~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
.|.+|++.+ .++.+|.||.|.+.||..|+.+... ....+.+.|+| +.|..
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCRP 50 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCcC
Confidence 388898832 4689999999999999999998421 12344559999 78863
No 45
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.73 E-value=9.5e-05 Score=73.12 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=71.9
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-----CC-eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHH
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-----GQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 859 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-----G~-~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~ 859 (920)
+|.+|++. .++||++|+|-|- |- .-..|-=|+|.++|||||+|+.|+..+-.+..+||+=++.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 68888885 4899999999773 22 3345666899999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 002450 860 IWTDKFGFKKID 871 (920)
Q Consensus 860 ~Wt~kFGF~~i~ 871 (920)
||.+ |||+...
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9985 9999765
No 46
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.73 E-value=1.5e-05 Score=95.79 Aligned_cols=89 Identities=31% Similarity=0.661 Sum_probs=65.9
Q ss_pred Ccchhcccccccc--cCCCCCCCccCccchhhhhhccccccchhhhhccccCCCChhhHHhhhhhhhhcccccccccccc
Q 002450 557 SPSQFEAHAECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLL 634 (920)
Q Consensus 557 cPS~FEaHa~CL~--LesIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~gvD~~e~i~~RC~R~vk~~e~e~~~C~v 634 (920)
||..+ |..|+. +..-|+++|.||.|....- ++. ..|.. -.+.+.+.|.+
T Consensus 2 ~~r~~--~~~~~~p~~~~~~~~~~k~~~~e~~~~----------~~~-----~~~~~------------~~~~~~e~c~i 52 (696)
T KOG0383|consen 2 CPRAY--HRVCLDPKLKEEPEMDPKCPGCESSSA----------QVE-----AKDDD------------WDDAEQEACRI 52 (696)
T ss_pred CCccc--CcCCCCcccccCCcCCccCcchhhccc----------ccc-----cccCC------------cchhhhhhhhh
Confidence 67888 999997 4456799999999963211 111 11110 01334578999
Q ss_pred ccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcch
Q 002450 635 CRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 635 C~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
|++ .++++.||.|+..||.+|+.+ ++...|.++|.| +.|.
T Consensus 53 c~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~ 92 (696)
T KOG0383|consen 53 CAD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCF 92 (696)
T ss_pred hcC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeec
Confidence 986 579999999999999999998 788899999999 6883
No 47
>PRK10514 putative acetyltransferase; Provisional
Probab=97.71 E-value=0.00017 Score=68.74 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=56.3
Q ss_pred eeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcChH
Q 002450 794 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 873 (920)
Q Consensus 794 e~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~~ 873 (920)
+.++++||.+.+.- .++-.+++.++|||||+|++|++.+++.+.. +...+...-..+..+|.+ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 56789999887642 3455799999999999999999999997643 334444555678999974 999998764
Q ss_pred H
Q 002450 874 L 874 (920)
Q Consensus 874 e 874 (920)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 48
>PRK10562 putative acetyltransferase; Provisional
Probab=97.69 E-value=0.00017 Score=69.46 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=56.9
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcC
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 871 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~ 871 (920)
++..+|++||.+.+... ..+-.++|.++|||+|+|+.||..+++.+..+.+ .+...-+.+..+|.+ +||+.++
T Consensus 52 v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~~ 124 (145)
T PRK10562 52 VWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIVD 124 (145)
T ss_pred EEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEcc
Confidence 44667899999887432 3566799999999999999999999997654432 233445567889985 9999987
Q ss_pred hH
Q 002450 872 PE 873 (920)
Q Consensus 872 ~~ 873 (920)
..
T Consensus 125 ~~ 126 (145)
T PRK10562 125 SA 126 (145)
T ss_pred cc
Confidence 64
No 49
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PHA01807 hypothetical protein
Probab=97.66 E-value=0.00012 Score=73.55 Aligned_cols=75 Identities=7% Similarity=-0.022 Sum_probs=58.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCC----eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhh---hHHHH
Q 002450 789 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIW 861 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~----~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~e---a~~~W 861 (920)
+..+++.+|++||.+++..... .+.+|--+.|.|+|||+|+|+.||+++++.++..|+..|++-...+ |..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355577999999999865432 2333444689999999999999999999999999999998776554 56677
Q ss_pred Hh
Q 002450 862 TD 863 (920)
Q Consensus 862 t~ 863 (920)
.+
T Consensus 134 ~~ 135 (153)
T PHA01807 134 RR 135 (153)
T ss_pred Hh
Confidence 65
No 51
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.65 E-value=0.00015 Score=65.79 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred CeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEE-EcC-hhhhHHHHHhccCcEEcCh
Q 002450 797 SSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV-LPA-AEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 797 ~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lv-lpA-~~ea~~~Wt~kFGF~~i~~ 872 (920)
++.+..++-.+.... ++|-.+.|.|+|||+|+|+.|+.++.+.+..-|..-+. +.. -..+..+|.+ +||+.+.+
T Consensus 7 ~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 7 GELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp TCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred CCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 355566666666544 99999999999999999999999999998888876533 333 3346788875 99998754
No 52
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.62 E-value=0.00031 Score=70.16 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=64.7
Q ss_pred EEEEeeCCeEEEEEEEEEeC--CeeeEeeeeeeccCccCCChhHHHHHHHHHHhh-hcCccEEEEcChh---hhHHHHHh
Q 002450 790 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTD 863 (920)
Q Consensus 790 ~~VLe~~~~vVsaAslrI~G--~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~-~LgVe~LvlpA~~---ea~~~Wt~ 863 (920)
..+++.+|++||.+.+.... ...+|+- +++.++|||+|+|+.|+..+.+.+. .+|+.+|++-... .+..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 34556789999999886543 3467774 8999999999999999999998765 6999999886443 57888875
Q ss_pred ccCcEEcCh
Q 002450 864 KFGFKKIDP 872 (920)
Q Consensus 864 kFGF~~i~~ 872 (920)
+||+.+..
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998755
No 53
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.60 E-value=0.00041 Score=67.01 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=66.8
Q ss_pred CceEEEEEeeCCeEEEEEEEEE------eCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhc-CccEEEEcChhh--
Q 002450 786 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEE-- 856 (920)
Q Consensus 786 ~GfY~~VLe~~~~vVsaAslrI------~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~L-gVe~LvlpA~~e-- 856 (920)
.+++.+|...+|++||.+.+.- .......+-.+++.++|||||+|+.++.++.+.+..- ++++|++...++
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4567778899999999887742 1335667889999999999999999999998887654 899999987764
Q ss_pred -hHHHHHhccCcEEcChHH
Q 002450 857 -AESIWTDKFGFKKIDPEL 874 (920)
Q Consensus 857 -a~~~Wt~kFGF~~i~~~e 874 (920)
+...++ |+||+.+..-+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 567776 59999876543
No 54
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=2.8e-05 Score=91.37 Aligned_cols=50 Identities=38% Similarity=1.015 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcch
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
..|..|.+.+ .| ..+|+||.|++.||+.||+|. + ..+.+|.|.||| +.|.
T Consensus 254 ~fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP-l-~~eniP~g~W~C-~ec~ 303 (613)
T KOG4299|consen 254 DFCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP-L-EPENIPPGSWFC-PECK 303 (613)
T ss_pred HHHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC-C-CcccCCCCcccc-CCCe
Confidence 4899998853 24 578999999999999999992 1 257899999999 8995
No 55
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.51 E-value=0.00029 Score=76.25 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=66.7
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhc-CccEEEEcChh-hhHHHHHhccC
Q 002450 789 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE-EAESIWTDKFG 866 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~L-gVe~LvlpA~~-ea~~~Wt~kFG 866 (920)
-+..++.+|+||+.|...-.+...|+|-.|.|.|+|||+||..+|+.++-..|-.- ...-|+..++. .|-.+|.+ .|
T Consensus 178 ~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-iG 256 (268)
T COG3393 178 RTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-IG 256 (268)
T ss_pred eEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-hC
Confidence 34444666799999999999999999999999999999999999999986655444 45556665444 46888985 99
Q ss_pred cEEcCh
Q 002450 867 FKKIDP 872 (920)
Q Consensus 867 F~~i~~ 872 (920)
|+.+++
T Consensus 257 F~~~g~ 262 (268)
T COG3393 257 FREIGE 262 (268)
T ss_pred Ceecce
Confidence 998763
No 56
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.48 E-value=0.00082 Score=64.50 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=62.9
Q ss_pred EeeCCeEEEEEEEEEeC--CeeeEeeeeeeccCccCCChhHHHHHHHHHHhh-hcCccEEEEcC---hhhhHHHHHhccC
Q 002450 793 LTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPA---AEEAESIWTDKFG 866 (920)
Q Consensus 793 Le~~~~vVsaAslrI~G--~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~-~LgVe~LvlpA---~~ea~~~Wt~kFG 866 (920)
+..+|++||.+.+.... ...+++-+. +.+.+| +|+|+.++.++++.+. .+|+.+|++.. -..+..++.+ +|
T Consensus 56 ~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k-~G 132 (156)
T TIGR03585 56 VCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK-FG 132 (156)
T ss_pred EEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-cC
Confidence 36789999999997655 356777655 889999 9999999999999976 58999998754 3456778875 99
Q ss_pred cEEcChHH
Q 002450 867 FKKIDPEL 874 (920)
Q Consensus 867 F~~i~~~e 874 (920)
|+.++...
T Consensus 133 f~~~g~~~ 140 (156)
T TIGR03585 133 FEREGVFR 140 (156)
T ss_pred CeEeeeeh
Confidence 99877543
No 57
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.46 E-value=0.00035 Score=69.92 Aligned_cols=81 Identities=25% Similarity=0.270 Sum_probs=66.7
Q ss_pred eeCCeEEEEEEEEEeCCeeeE--eeeeeeccCccCCChhHHHHHHHHHHhhhcC-ccEEEEcChhhhHHHHHhccCcEEc
Q 002450 794 TVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 794 e~~~~vVsaAslrI~G~~vAE--lplvAT~~~yqgqG~gr~Lv~~IE~~L~~Lg-Ve~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
..+|++|+.|.|---+....+ |=-|+|.+++||+|+|+.||....+.+.... =+.+.+.|-.-++.||.+ |||.++
T Consensus 56 ~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GFv~~ 134 (155)
T COG2153 56 TPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGFVRV 134 (155)
T ss_pred cCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCcEEc
Confidence 448999998887655665555 7789999999999999999987777765555 566899998899999986 999999
Q ss_pred ChHHH
Q 002450 871 DPELL 875 (920)
Q Consensus 871 ~~~el 875 (920)
+++-+
T Consensus 135 ~e~yl 139 (155)
T COG2153 135 GEEYL 139 (155)
T ss_pred Cchhh
Confidence 98764
No 58
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.44 E-value=5.8e-05 Score=89.03 Aligned_cols=82 Identities=29% Similarity=0.829 Sum_probs=62.4
Q ss_pred CcccCCCCCccCcchhccccccccc--C-CCCCCCccCccchhhhhhccccccchhhhhccccCCCChhhHHhhhhhhhh
Q 002450 546 GIICHCCNSEVSPSQFEAHAECASL--S-SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIV 622 (920)
Q Consensus 546 GI~CdCCn~evcPS~FEaHa~CL~L--e-sIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~gvD~~e~i~~RC~R~v 622 (920)
..-|.+|.+- +|-+|+.+ . .+-.+-|.||.|+
T Consensus 35 m~ac~~c~~~-------yH~~cvt~~~~~~~l~~gWrC~~cr-------------------------------------- 69 (694)
T KOG4443|consen 35 LLACSDCGQK-------YHPYCVTSWAQHAVLSGGWRCPSCR-------------------------------------- 69 (694)
T ss_pred chhhhhhccc-------CCcchhhHHHhHHHhcCCcccCCce--------------------------------------
Confidence 4569999763 39999873 1 2234559999996
Q ss_pred ccccccccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHH
Q 002450 623 KNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 691 (920)
Q Consensus 623 k~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~ 691 (920)
.|..|+.. -++...++|+.|+-.||.+|..| +++.+|.|.|+| +.|...+
T Consensus 70 --------vCe~c~~~------gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c-kk~~~c~ 119 (694)
T KOG4443|consen 70 --------VCEACGTT------GDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC-KKCTRCR 119 (694)
T ss_pred --------eeeecccc------CCcccccccccccccccccccCC----ccccccCccccc-HHHHhhh
Confidence 37777631 14678999999999999999999 789999999999 6665544
No 59
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.44 E-value=0.00083 Score=63.00 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=57.2
Q ss_pred CCeEEEEEEEEEe--CCeeeEeeeeeeccCccCCChhHHHHHHHHHHh-hhcCccEEEEcChhh---hHHHHHhccCcE
Q 002450 796 NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEE---AESIWTDKFGFK 868 (920)
Q Consensus 796 ~~~vVsaAslrI~--G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L-~~LgVe~LvlpA~~e---a~~~Wt~kFGF~ 868 (920)
++++||...++.. ....|||- +.+.++|||+|+|+.++..+.+.+ ..+|+.+|.+...++ +..+.. |.||+
T Consensus 66 ~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~-k~GF~ 142 (142)
T PF13302_consen 66 DGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLE-KLGFE 142 (142)
T ss_dssp TTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHH-HTT-E
T ss_pred CCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHH-HcCCC
Confidence 4589999999543 45899999 668889999999999999999998 799999998886664 344554 59995
No 60
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.41 E-value=4.2e-05 Score=90.83 Aligned_cols=139 Identities=24% Similarity=0.406 Sum_probs=86.1
Q ss_pred ceecCCCcccCCCCCccCcchhcccccccccCCCCCCCccCccchhh------hhhc--cccccc--hhhhhcc------
Q 002450 540 GYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNM------FERK--RFLQHD--ANAVEAG------ 603 (920)
Q Consensus 540 G~ktgdGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~~------f~~e--k~~~~n--~Na~aag------ 603 (920)
+....+.|+||-||.-| |+.|+++..+|+|.|.|..|.-. +|+. +.+..+ ...||+-
T Consensus 282 ~e~~neMVfCd~Cn~cV-------HqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHvsCALwI 354 (893)
T KOG0954|consen 282 SEEANEMVFCDKCNICV-------HQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHVSCALWI 354 (893)
T ss_pred ccccceeEEeccchhHH-------HHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEeeeeecc
Confidence 45566779999998754 99999999999999999999633 4432 444433 2346642
Q ss_pred ---ccCCCChhhHHhhhhhhhhccccccccccccccCCCCCCCCCCCCceeecC--CCCCccccccCccCcCCc---cCC
Q 002450 604 ---RVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMAD---LRE 675 (920)
Q Consensus 604 ---~i~gvD~~e~i~~RC~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p~~~~~---L~e 675 (920)
-|+..+.+++|++-. ++.+.. =.-.|.+|+.. .|.-|.|. .|.-+||+.|...+++.- +.+
T Consensus 355 PEVsie~~ekmePItkfs-~IpesR--wslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~ 423 (893)
T KOG0954|consen 355 PEVSIECPEKMEPITKFS-HIPESR--WSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKE 423 (893)
T ss_pred ceeeccCHhhcCcccccC-CCcHHH--HHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCeeeeeecc
Confidence 244455556665311 000000 01369999762 34666666 799999999999987631 112
Q ss_pred CC--CcceeecCcchhHHHHHHHhhh
Q 002450 676 LP--KGKWFCCMDCSRINSVLQNLLV 699 (920)
Q Consensus 676 vP--~g~WFC~~~C~~I~~~LqkLl~ 699 (920)
.. ...-|| ..|..+.+ .+.++
T Consensus 424 ~D~v~~~s~c-~khs~~~~--~~s~g 446 (893)
T KOG0954|consen 424 NDEVKFKSYC-SKHSDHRE--GKSLG 446 (893)
T ss_pred CCchhheeec-cccccccc--ccccc
Confidence 21 124688 67776654 34444
No 61
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.40 E-value=0.00041 Score=81.85 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred eCCeEEEEEEEEEeCCeee-----------Eeeeeee--------ccCccCCChhHHHHHHHHHHhhhcCccEEEEcChh
Q 002450 795 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 855 (920)
Q Consensus 795 ~~~~vVsaAslrI~G~~vA-----------ElplvAT--------~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ 855 (920)
.++.+||-..+|....+.. |+-..++ .++|||||+|+.||.++|+.++..|++.|++.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4568888888887654322 5555544 58899999999999999999999999999999888
Q ss_pred hhHHHHHhccCcEEcCh
Q 002450 856 EAESIWTDKFGFKKIDP 872 (920)
Q Consensus 856 ea~~~Wt~kFGF~~i~~ 872 (920)
.+..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 89999985 99997654
No 62
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.37 E-value=0.001 Score=69.61 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=64.5
Q ss_pred ceeCceEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CeeeEeeeeeeccC
Q 002450 783 QEFGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKI 823 (920)
Q Consensus 783 ~~f~GfY~~VLe~~~--~vVsaAslrI~G-------------------------------------~~vAElplvAT~~~ 823 (920)
+|-.+....+|..++ +||+|+-+-.-| -.-++|--|||+|+
T Consensus 22 lDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~ 101 (196)
T PF13718_consen 22 LDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPD 101 (196)
T ss_dssp HH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CC
T ss_pred hcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChh
Confidence 355667778888888 999999886665 24567788999999
Q ss_pred ccCCChhHHHHHHHHHHh-------------------------hhcCccEEEEc--ChhhhHHHHHhccCcEEcChHHH
Q 002450 824 NHGKGYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDPELL 875 (920)
Q Consensus 824 yqgqG~gr~Lv~~IE~~L-------------------------~~LgVe~Lvlp--A~~ea~~~Wt~kFGF~~i~~~el 875 (920)
+||+|||+.|+..+++.+ +.-+|..|=.. +.+++..||.+ .||.++--.+.
T Consensus 102 ~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l~~~ 179 (196)
T PF13718_consen 102 LQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYLGQT 179 (196)
T ss_dssp C-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE-SS
T ss_pred hhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEEecC
Confidence 999999999999999999 46677776554 66889999996 99998865543
No 63
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.30 E-value=0.0012 Score=66.57 Aligned_cols=83 Identities=8% Similarity=0.137 Sum_probs=63.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCC---eeeEeeeeeeccCccCCChhHHHHHHHHHHhhh-cCccEEEEcChhh---hHHH
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE---AESI 860 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~---~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~-LgVe~LvlpA~~e---a~~~ 860 (920)
.|.+++..++++||.+.+..... ..+||= +.+.++|||||+|+.++.++.+.+.. +|+.+|++.+.+. +..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45554455789999999875532 446654 56799999999999999999999865 8999999887653 5666
Q ss_pred HHhccCcEEcCh
Q 002450 861 WTDKFGFKKIDP 872 (920)
Q Consensus 861 Wt~kFGF~~i~~ 872 (920)
+. |+||+..+.
T Consensus 156 ~e-k~Gf~~~g~ 166 (194)
T PRK10809 156 LA-RLGFEKEGY 166 (194)
T ss_pred HH-HCCCcEEee
Confidence 66 599997654
No 64
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.24 E-value=0.0025 Score=65.52 Aligned_cols=136 Identities=16% Similarity=0.181 Sum_probs=91.7
Q ss_pred HHHHHHHhhccCcccccCcCCCcchhhhccccCCCceeCceEEEEEeeCCeEEEEEEEE-E-eC-C--eeeEeeeeeecc
Q 002450 748 SQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILR-V-FG-Q--EVAELPLVATSK 822 (920)
Q Consensus 748 a~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~~r~~f~GfY~~VLe~~~~vVsaAslr-I-~G-~--~vAElplvAT~~ 822 (920)
....+|.++.|.|- ...+++..+.-+ .+.++.=.+.+ +.+|+||+-..+- | +| . .+-=|=-+||+|
T Consensus 15 ~~i~~~~~~aF~~~----~e~~~v~~lR~~---~~~~~~LslVA--~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p 85 (171)
T COG3153 15 PAIEALTREAFGPG----REAKLVDKLREG---GRPDLTLSLVA--EDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDP 85 (171)
T ss_pred HHHHHHHHHHhhcc----hHHHHHHHHHhc---CCcccceeEEE--eeCCEEEEEEEEeEEEecCcccceEEEEeEEEch
Confidence 44556677888743 333444443332 22233333444 6779999866543 2 23 1 445566789999
Q ss_pred CccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcChHHHHHHHHhCcceeeecCcceeeecccCCc
Q 002450 823 INHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPACR 902 (920)
Q Consensus 823 ~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~~el~~~~~~~~~~~~F~Gts~LqK~L~~~~ 902 (920)
+|||||+|++||...++.|+.+|...+++.-++. .| .+|||.......+. .+.. +|.+.+|.++|....
T Consensus 86 ~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~---YY-~rfGF~~~~~~~l~------~p~~-~~~~~fl~~~L~~~~ 154 (171)
T COG3153 86 EYQGQGIGSALVREGLEALRLAGASAVVVLGDPT---YY-SRFGFEPAAGAKLY------APGP-VPDERFLALELGDGA 154 (171)
T ss_pred hhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc---cc-cccCcEEccccccc------cCCC-CCCceEEEEEccCCc
Confidence 9999999999999999999999999999987543 45 67999998876642 1333 677788888886643
Q ss_pred c
Q 002450 903 I 903 (920)
Q Consensus 903 ~ 903 (920)
.
T Consensus 155 l 155 (171)
T COG3153 155 L 155 (171)
T ss_pred c
Confidence 3
No 65
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.18 E-value=0.0022 Score=63.70 Aligned_cols=78 Identities=8% Similarity=0.084 Sum_probs=60.9
Q ss_pred eeCCeEEEEEEEEEeCC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhh-hcCccEEEEcChhh---hHHHHHhccCc
Q 002450 794 TVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAEE---AESIWTDKFGF 867 (920)
Q Consensus 794 e~~~~vVsaAslrI~G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~-~LgVe~LvlpA~~e---a~~~Wt~kFGF 867 (920)
..+|++||.+.++.... +.+|+=. .+.++|||||+|+.++.++.+.+. .+|+++|.+.+.+. +..++. |+||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-RNGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-HCCC
Confidence 45889999999876532 5688865 689999999999999999888775 57899988765443 566665 5999
Q ss_pred EEcChH
Q 002450 868 KKIDPE 873 (920)
Q Consensus 868 ~~i~~~ 873 (920)
+..+..
T Consensus 151 ~~~g~~ 156 (179)
T PRK10151 151 TLEGCL 156 (179)
T ss_pred EEEeEe
Confidence 976654
No 66
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0029 Score=64.98 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred eeCceEEEEEeeC-CeEEEEEEEEEeCC-----eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh--h
Q 002450 784 EFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA--E 855 (920)
Q Consensus 784 ~f~GfY~~VLe~~-~~vVsaAslrI~G~-----~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~--~ 855 (920)
.=.|||.+|++.+ |+|++=|++.-|.. .++|. .|=++++.||+|+|++|+.++.+.+..+|+..++.--. .
T Consensus 48 ~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n 126 (169)
T COG1247 48 TRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDN 126 (169)
T ss_pred ccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCC
Confidence 3356888888765 99999998877643 44443 45689999999999999999999999999988775422 2
Q ss_pred hhHHHHHhccCcEEcChHHHHHHHHhCcceeeecCcceeeecccC
Q 002450 856 EAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 900 (920)
Q Consensus 856 ea~~~Wt~kFGF~~i~~~el~~~~~~~~~~~~F~Gts~LqK~L~~ 900 (920)
.+.--..++|||...+....-- ...-.|-.+..||+.|..
T Consensus 127 ~aSi~lh~~~GF~~~G~~~~vg-----~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 127 LASIALHEKLGFEEVGTFPEVG-----DKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cHhHHHHHHCCCEEeccccccc-----cccceEEeeeeeehhhcc
Confidence 3444555679999988765331 133445666777777654
No 67
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.04 E-value=0.00033 Score=82.59 Aligned_cols=50 Identities=28% Similarity=0.724 Sum_probs=36.1
Q ss_pred eeeecceecCCCc--ccCCCCC----------ccCcchhccccccccc----CCCCCCCccCccchhh
Q 002450 535 QKLLEGYKNGLGI--ICHCCNS----------EVSPSQFEAHAECASL----SSIPQGDWYCKYCQNM 586 (920)
Q Consensus 535 q~lL~G~ktgdGI--~CdCCn~----------evcPS~FEaHa~CL~L----esIPsGdW~Cp~C~~~ 586 (920)
+...++++.-..| +|.-|++ +.||..| |+.||+. +.+|.|.|||+.|.+.
T Consensus 240 r~~~D~~~~~~~~~~fCsaCn~~~~F~~~i~CD~Cp~sF--H~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 240 RRERDKNISVEDIEDFCSACNGSGLFNDIICCDGCPRSF--HQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhhhccccccCCHHHHHHHhCCccccccceeecCCchHH--HHhhcCCCCCcccCCCCccccCCCeee
Confidence 3345555555554 6665554 3479999 9999984 5899999999999643
No 68
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.74 E-value=0.0096 Score=58.71 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=60.3
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcCh------hhhHHH
Q 002450 787 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESI 860 (920)
Q Consensus 787 GfY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~------~ea~~~ 860 (920)
-+|++ +-|+.++||+.+.+.| +-++|--+.|++.-||.|.|..|++.+.+.+ -+|...++.+. ..+...
T Consensus 39 ~l~aA--rFNdRlLgAv~v~~~~-~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~ 113 (128)
T PF12568_consen 39 RLFAA--RFNDRLLGAVKVTISG-QQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAA 113 (128)
T ss_dssp EEEEE--EETTEEEEEEEEEEET-TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHH
T ss_pred eEEEE--EechheeeeEEEEEcC-cceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHH
Confidence 36877 8899999999999987 5899999999999999999999999999999 45556555543 245566
Q ss_pred HHhccCcEEcCh
Q 002450 861 WTDKFGFKKIDP 872 (920)
Q Consensus 861 Wt~kFGF~~i~~ 872 (920)
+...+||+..++
T Consensus 114 Fm~a~GF~~~~~ 125 (128)
T PF12568_consen 114 FMQACGFSAQSD 125 (128)
T ss_dssp HHHHHT-EE-SS
T ss_pred HHHHcCccccCC
Confidence 677799987653
No 69
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.69 E-value=0.00076 Score=67.72 Aligned_cols=26 Identities=42% Similarity=1.106 Sum_probs=23.9
Q ss_pred ccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 659 EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 659 ~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
+||+.||+| ||+++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 599999999 899999999999 89963
No 70
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.43 E-value=0.0019 Score=80.92 Aligned_cols=51 Identities=27% Similarity=0.782 Sum_probs=42.4
Q ss_pred cccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 628 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 628 e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
+...|.||.+++- +....+++||.|..++|+.|+. ..-+|+|.|+| ..|..
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~ 268 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQ 268 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhcc
Confidence 4468999998763 3457899999999999999996 35789999999 88953
No 71
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.36 E-value=0.0067 Score=56.45 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=57.3
Q ss_pred EEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHH--HhccCcEE
Q 002450 792 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW--TDKFGFKK 869 (920)
Q Consensus 792 VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~W--t~kFGF~~ 869 (920)
||--.|.+||=... .+.+||+.-.|.|+|||||+.+.++....+.|..+|+.- ++..+++-+... .+++||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHHHCCCee
Confidence 34556788886654 477899999999999999999999999999999999974 344443333222 24599988
Q ss_pred cC
Q 002450 870 ID 871 (920)
Q Consensus 870 i~ 871 (920)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 72
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.33 E-value=0.00097 Score=86.13 Aligned_cols=60 Identities=32% Similarity=0.733 Sum_probs=49.2
Q ss_pred ccccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHHHHHHHh
Q 002450 627 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNL 697 (920)
Q Consensus 627 ~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~~~LqkL 697 (920)
.....|.+|+.. .+...+++||+|.++||..|++| .+..+|.++||| +.|..-....+.+
T Consensus 1106 ~~~~~c~~cr~k------~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~ 1165 (1404)
T KOG1245|consen 1106 AVNALCKVCRRK------KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQK 1165 (1404)
T ss_pred cchhhhhhhhhc------ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhh
Confidence 344689999873 35678999999999999999999 788999999999 8998666544443
No 73
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.064 Score=54.60 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHhhccCcccccCcCCCcchhhhccccCCCceeCceEEEEEee-CCeEEEEEEEEEe-----CCeee
Q 002450 740 TPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-----GQEVA 813 (920)
Q Consensus 740 ~~e~~s~La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~~r~~f~GfY~~VLe~-~~~vVsaAslrI~-----G~~vA 813 (920)
+.+.-.+|-.-|+.|+.+=+|.+. |.-+|-.+- |....|.=.+.+.++. ++++||-|.+..+ |.+.-
T Consensus 13 D~~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~i 85 (163)
T KOG3216|consen 13 DCEDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGI 85 (163)
T ss_pred cHHHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceE
Confidence 344555666778888887777654 344444333 3334455556666665 7899999888764 33555
Q ss_pred EeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEE---EEcChhhhHHHHHhccCcEEcCh
Q 002450 814 ELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~L---vlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
=|-=+=++++|||+|+|+.|+..+-+.+..+|..++ |+.--.-|+.+|.+ .|++....
T Consensus 86 YleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 86 YLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 566677999999999999999999999999998875 55555678999985 99987765
No 74
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.22 E-value=0.0024 Score=68.81 Aligned_cols=49 Identities=43% Similarity=1.164 Sum_probs=38.4
Q ss_pred cccccccccccCCCCCCCCCCCCceeecC--CCCCc-cccccCccCcCCccCCCCCcceeecCcchh
Q 002450 626 EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 626 e~e~~~C~vC~~~df~~sgf~~~~LLlCD--QCer~-YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
+++.-+|+ |++-. | +.|+-|| -|+++ ||..|+ .|++.|+|.||| ++|+.
T Consensus 218 e~e~lYCf-CqqvS-----y--GqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVS-----Y--GQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred cCceeEEE-ecccc-----c--ccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 33445674 87743 3 5899999 68876 899999 478999999999 89975
No 75
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.13 E-value=0.0023 Score=70.01 Aligned_cols=36 Identities=39% Similarity=1.022 Sum_probs=31.4
Q ss_pred CCceeecCC--CC-CccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 647 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 647 ~~~LLlCDQ--Ce-r~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
-+.++.||. |+ ..||..|+ .|++-|.|.||| +.|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 368999998 99 88999999 478899999999 68864
No 76
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.05 E-value=0.019 Score=63.40 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=72.2
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCc
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 867 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 867 (920)
.++++...+++||+++++ +|. -|+-|||++.+||-|.--.|+.++..++-++|..+||+-+-++...++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 466666777999999995 564 38999999999999999999999999999999999999999999999986 999
Q ss_pred EEcChHH
Q 002450 868 KKIDPEL 874 (920)
Q Consensus 868 ~~i~~~e 874 (920)
..+...+
T Consensus 111 ~~i~~~~ 117 (352)
T COG3053 111 SEIASAE 117 (352)
T ss_pred eEeeccC
Confidence 9988755
No 77
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.00 E-value=0.003 Score=69.12 Aligned_cols=37 Identities=41% Similarity=0.945 Sum_probs=31.0
Q ss_pred cCCCcccCC--CCCccCcchhcccccccccCCCCCCCccCccchh
Q 002450 543 NGLGIICHC--CNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQN 585 (920)
Q Consensus 543 tgdGI~CdC--Cn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~ 585 (920)
-|+=|-||+ |..+ =| |..|.+|..-|.|.||||.|..
T Consensus 229 yg~Mi~CDn~~C~~e----WF--H~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIE----WF--HFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred cccccccCCCCCCcc----eE--EEeccccccCCCCcccchhhhh
Confidence 456688888 7533 48 9999999999999999999974
No 78
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=95.97 E-value=0.04 Score=60.38 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=56.3
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcE
Q 002450 789 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 868 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~ 868 (920)
||+ ..+|+|||.|+-.......+||- |+|.++|||||+.+++..++......-|+--.|--+ ..+.----.|+||+
T Consensus 168 f~i--~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~ 243 (265)
T PF12746_consen 168 FCI--LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFH 243 (265)
T ss_dssp EEE--EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--
T ss_pred EEE--EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCc
Confidence 454 56889999777666666788985 799999999999999999999999999988888654 32322333579998
Q ss_pred EcC
Q 002450 869 KID 871 (920)
Q Consensus 869 ~i~ 871 (920)
...
T Consensus 244 ~~~ 246 (265)
T PF12746_consen 244 FDF 246 (265)
T ss_dssp EEE
T ss_pred ccc
Confidence 653
No 79
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.89 E-value=0.0016 Score=50.96 Aligned_cols=34 Identities=35% Similarity=1.003 Sum_probs=19.2
Q ss_pred CCCcccCCCCCccCcchhcccccccccCCCCCC-CccCccch
Q 002450 544 GLGIICHCCNSEVSPSQFEAHAECASLSSIPQG-DWYCKYCQ 584 (920)
Q Consensus 544 gdGI~CdCCn~evcPS~FEaHa~CL~LesIPsG-dW~Cp~C~ 584 (920)
...|.|+.|+.. +|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~-------VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVA-------VHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--E-------EEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCc-------CChhhCCcccCCCCCcEECCcCC
Confidence 356889999763 39999999999998 89999984
No 80
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=95.88 E-value=0.017 Score=59.60 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=61.6
Q ss_pred eCCeEEEEEEEE-EeCC-eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcCh
Q 002450 795 VNSSVVSAGILR-VFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 795 ~~~~vVsaAslr-I~G~-~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
.+++||+-+.|- |-.. +.--+-.|.|....||||+|++||+..|..++..|.+.+.|.++ +-..||++ +||..-++
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~-DQ~~FYe~-lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTD-DQCRFYES-LGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecc-cchhhhhh-hcccccCc
Confidence 346777655543 3333 44556788899999999999999999999999999999999875 45789987 99998776
Q ss_pred HH
Q 002450 873 EL 874 (920)
Q Consensus 873 ~e 874 (920)
-+
T Consensus 142 i~ 143 (225)
T KOG3397|consen 142 IV 143 (225)
T ss_pred ee
Confidence 55
No 81
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.05 Score=52.65 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=66.3
Q ss_pred CceEEEEEeeCC--eEEEEEEEEEeC----CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhh-cCccEEEEcChhhhH
Q 002450 786 GGMYCAILTVNS--SVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEAE 858 (920)
Q Consensus 786 ~GfY~~VLe~~~--~vVsaAslrI~G----~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~-LgVe~LvlpA~~ea~ 858 (920)
.+.|.+++..++ ++||.+.+..+. .+.+|+=..- .+.|+|||++...+.++.+.+-. +++.+|++-..+.-+
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 345666656544 999999998654 4667766555 89999999999999998888655 999999988777654
Q ss_pred HHHH--hccCcEEcChHHH
Q 002450 859 SIWT--DKFGFKKIDPELL 875 (920)
Q Consensus 859 ~~Wt--~kFGF~~i~~~el 875 (920)
.-+. .|+||+..+....
T Consensus 143 ~S~rv~ek~Gf~~eg~~~~ 161 (187)
T COG1670 143 ASIRVYEKLGFRLEGELRQ 161 (187)
T ss_pred HHHHHHHHcCChhhhhhhh
Confidence 4444 5699997765443
No 82
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.80 E-value=0.0033 Score=72.67 Aligned_cols=47 Identities=34% Similarity=0.946 Sum_probs=39.9
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCc----ceeecCcc
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG----KWFCCMDC 687 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g----~WFC~~~C 687 (920)
..|.||++.. +-..++.||.|-..||++||.| ||+.+|.- -|-| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 5899999842 3457789999999999999999 89998875 4999 699
No 83
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.72 E-value=0.013 Score=48.19 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred eeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCc
Q 002450 818 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 867 (920)
Q Consensus 818 vAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 867 (920)
++|.++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998877 44456777765 888
No 84
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.64 E-value=0.0051 Score=73.33 Aligned_cols=49 Identities=31% Similarity=0.987 Sum_probs=41.6
Q ss_pred cccccccCCCCCCCCCCCCceeecC--CCCCccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
++|-||.+.. |..+..++.|| -|.-+.|+.|+. +.++|.|.||| ..|..
T Consensus 6 GGCCVCSDEr----GWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 6 GGCCVCSDER----GWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred cceeeecCcC----CCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 6899997632 45588999999 699999999994 57899999999 89963
No 85
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.58 E-value=0.0058 Score=61.54 Aligned_cols=23 Identities=39% Similarity=1.135 Sum_probs=20.9
Q ss_pred cccccc--cCCCCCCCccCccchhh
Q 002450 564 HAECAS--LSSIPQGDWYCKYCQNM 586 (920)
Q Consensus 564 Ha~CL~--LesIPsGdW~Cp~C~~~ 586 (920)
|..||+ |..+|+|+|+||.|...
T Consensus 3 H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 3 HLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred ccccCCCCCCCCCCCCcCCCCCcCC
Confidence 999998 67999999999999864
No 86
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.40 E-value=0.009 Score=69.44 Aligned_cols=126 Identities=22% Similarity=0.379 Sum_probs=71.4
Q ss_pred CCcccCCCCCccCcchhcccccccccCCCCCCCccCccchhh-hhhccccccchhhhhccccC------CCChhhHHhhh
Q 002450 545 LGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNM-FERKRFLQHDANAVEAGRVS------GVDSVEQITKR 617 (920)
Q Consensus 545 dGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~~-f~~ek~~~~n~Na~aag~i~------gvD~~e~i~~R 617 (920)
....|+-|.. .+ |+.|--....-.+.|.+..|... +..++.... .|+.+ +....++ +
T Consensus 99 e~~~~~r~~~-----~~--~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K------~g~~a~~~l~y~~~~l~w---D 162 (464)
T KOG4323|consen 99 EKVICGRCKS-----GY--HQGCNIPRFPSLDIGESTECVFPIFSQEGGALK------KGRLARPSLPYPEASLDW---D 162 (464)
T ss_pred hhhhhhhhcc-----Cc--ccccCccCcCcCCcccccccccccccccccccc------ccccccccccCccccccc---C
Confidence 3445777754 45 99997665555688999988642 332221110 11111 1111110 0
Q ss_pred hhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHHHHHHHh
Q 002450 618 CIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNL 697 (920)
Q Consensus 618 C~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~~~LqkL 697 (920)
-. ...+ ..|.+|+.... +. ...|+.|+.|...||..|..+-...-+-.-|...||| ..|.+=.+.+..+
T Consensus 163 ~~-----~~~n-~qc~vC~~g~~---~~-~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r~ 231 (464)
T KOG4323|consen 163 SG-----HKVN-LQCSVCYCGGP---GA-GNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPRL 231 (464)
T ss_pred cc-----cccc-ceeeeeecCCc---Cc-cceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhcccc
Confidence 00 0112 24999986332 22 3489999999999999999984322222346789999 6887544444333
No 87
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.40 E-value=0.045 Score=57.31 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=64.3
Q ss_pred EEEEEeeCCeEEEEEEEEEe---CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEc---ChhhhHHHHH
Q 002450 789 YCAILTVNSSVVSAGILRVF---GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWT 862 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~---G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp---A~~ea~~~Wt 862 (920)
|....+..+++||-+++|+- |-.++=.-=|-+.+.|||+|+|+.|++.+|.+....+.+.++|- .-.-+.+||.
T Consensus 94 Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 94 YICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHH
Confidence 66666666699999999984 54455555566778899999999999999999988888866553 4445788997
Q ss_pred hccCcEEcCh
Q 002450 863 DKFGFKKIDP 872 (920)
Q Consensus 863 ~kFGF~~i~~ 872 (920)
+ +||-+.+.
T Consensus 174 ~-~gf~~~~~ 182 (202)
T KOG2488|consen 174 R-LGFVVDEE 182 (202)
T ss_pred H-cCcccCCC
Confidence 6 99987654
No 88
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.35 E-value=0.0067 Score=70.13 Aligned_cols=47 Identities=32% Similarity=0.830 Sum_probs=38.7
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcc
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 687 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C 687 (920)
+.|.+|...+-+ +.+.+++||.|+-.-|..|+. +..+|+|.|+| +.|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 568888775533 246899999999999999995 46789999999 788
No 89
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.04 E-value=0.083 Score=50.17 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred CceEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 786 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 786 ~GfY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
+++|++ ..+|+.++.++..-.|.+.--|+=--|.+++||||+++.|+....+.++.-|.+ ++|.-+-+...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 567876 888999999999888989999999999999999999999999999999999863 5566553333343
No 90
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.03 E-value=0.01 Score=64.18 Aligned_cols=53 Identities=32% Similarity=0.777 Sum_probs=38.9
Q ss_pred CCCCCCEEeEeeCCeeeecceecCCCcccCC--CCCccCcchhcccccccccCCCCCCCccCccchh
Q 002450 521 GLPDGTEVGYYACGQKLLEGYKNGLGIICHC--CNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQN 585 (920)
Q Consensus 521 gL~dGteV~Y~~~gq~lL~G~ktgdGI~CdC--Cn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~ 585 (920)
+..+|.+|..|-+- .-.|+-|-||. |..+ =| |..|.+|...|.|.|||+.|..
T Consensus 215 d~se~e~lYCfCqq------vSyGqMVaCDn~nCkrE----WF--H~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 215 DNSEGEELYCFCQQ------VSYGQMVACDNANCKRE----WF--HLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ccccCceeEEEecc------cccccceecCCCCCchh----he--eccccccCCCCCCcEeCHHhHh
Confidence 34578888777431 12456677874 5444 37 9999999999999999999963
No 91
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.02 E-value=0.03 Score=68.75 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=46.7
Q ss_pred EeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEc--ChhhhHHHHHhccCcEEcChHH
Q 002450 814 ELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFGFKKIDPEL 874 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp--A~~ea~~~Wt~kFGF~~i~~~e 874 (920)
.|--|||+|++|++|||++|+..+.+.++ .|+..|-.. +.+++..||.+ .||.++--..
T Consensus 533 RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhls~ 593 (758)
T COG1444 533 RIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHLSP 593 (758)
T ss_pred eEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEecC
Confidence 34457999999999999999999999985 444444433 57889999996 9999886544
No 92
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.02 E-value=0.018 Score=59.01 Aligned_cols=22 Identities=23% Similarity=0.603 Sum_probs=18.8
Q ss_pred CCceeecCCCCCccccccCccC
Q 002450 647 PRTILLCDQCEREFHVGCLKKH 668 (920)
Q Consensus 647 ~~~LLlCDQCer~YHv~CL~p~ 668 (920)
+..|.-|..|.++||+.-|.+.
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred hheEEecCCccceeehhhCCCC
Confidence 4567889999999999999774
No 93
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=94.99 E-value=0.11 Score=46.66 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=51.8
Q ss_pred EeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHh
Q 002450 793 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 863 (920)
Q Consensus 793 Le~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~ 863 (920)
+..+|+.+|...++. +.+.-.|--.-|.+++||||+++.||.++.+.++.-|.+- .|. .+...-|.+
T Consensus 4 ~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv--~p~-C~y~~~~~~ 70 (78)
T PF14542_consen 4 LKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKV--VPT-CSYVAKYFR 70 (78)
T ss_dssp EESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EE--EET-SHHHHHHHH
T ss_pred EEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEE--EEE-CHHHHHHHH
Confidence 356688999999988 5578888889999999999999999999999999999653 344 334445553
No 94
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=94.58 E-value=0.029 Score=57.17 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=49.9
Q ss_pred eEeeeeeeccCccCCChhHHHHHH-HHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcCh
Q 002450 813 AELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 813 AElplvAT~~~yqgqG~gr~Lv~~-IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
+-|-.+|+.++||.||++..|+.. |..+-..-=|.+.+|-+-+.+++||.+ |||+.+++
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 567789999999999999999877 555555556778888888889999986 99999998
No 95
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=94.57 E-value=0.011 Score=48.15 Aligned_cols=36 Identities=44% Similarity=1.103 Sum_probs=28.9
Q ss_pred cCCCcccCCCCCccCcchhcccccccccC----CCCCCCccCccchh
Q 002450 543 NGLGIICHCCNSEVSPSQFEAHAECASLS----SIPQGDWYCKYCQN 585 (920)
Q Consensus 543 tgdGI~CdCCn~evcPS~FEaHa~CL~Le----sIPsGdW~Cp~C~~ 585 (920)
.++.|.|+.|+. .| |..|+++. .++.+.|+|+.|+.
T Consensus 11 ~~~~i~C~~C~~-----~~--H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 11 DGDMIQCDSCNR-----WY--HQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp TSSEEEBSTTSC-----EE--ETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CCCeEEcCCCCh-----hh--CcccCCCChhhccCCCCcEECcCCcC
Confidence 466789999975 56 99999965 55667999999974
No 96
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.00 E-value=0.017 Score=66.93 Aligned_cols=116 Identities=27% Similarity=0.580 Sum_probs=68.3
Q ss_pred cCCCcccCCCCCccCcchhcccccccccC---CCCCC-------CccCccchh-------hhhhcc--ccc-cchhhhhc
Q 002450 543 NGLGIICHCCNSEVSPSQFEAHAECASLS---SIPQG-------DWYCKYCQN-------MFERKR--FLQ-HDANAVEA 602 (920)
Q Consensus 543 tgdGI~CdCCn~evcPS~FEaHa~CL~Le---sIPsG-------dW~Cp~C~~-------~f~~ek--~~~-~n~Na~aa 602 (920)
.++-|-|+-|+..| |-+|++.. +||+| .|||-.|.. .+|+.+ .+. .....|++
T Consensus 133 a~ei~qCd~CGi~V-------HEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetDigrWvH 205 (707)
T KOG0957|consen 133 AGEILQCDKCGINV-------HEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETDIGRWVH 205 (707)
T ss_pred ccceeeccccCcee-------cccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccchhhHHH
Confidence 35668899998754 99999853 66764 599999974 345432 222 22333432
Q ss_pred c----ccCCCChhhHHhhhhhhhhccccccc---cccccccCCCCCCCCCCCCceeecC--CCCCccccccCccCcC
Q 002450 603 G----RVSGVDSVEQITKRCIRIVKNLEAEL---SGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKM 670 (920)
Q Consensus 603 g----~i~gvD~~e~i~~RC~R~vk~~e~e~---~~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p~~~ 670 (920)
- -+.|+ ..-++..+|.=++.++.... ..|..|.+.-|.+. |..+.|| .|..-|||+|.+--++
T Consensus 206 ~iCALYvpGV-afg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARt----Gvci~CdaGMCk~YfHVTCAQk~Gl 277 (707)
T KOG0957|consen 206 AICALYVPGV-AFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFART----GVCIRCDAGMCKEYFHVTCAQKLGL 277 (707)
T ss_pred HHHHhhcCcc-ccccccccccccHHHhhhhhhccchhccccchhhhhc----ceeeeccchhhhhhhhhhHHhhhcc
Confidence 1 11222 11233344443344433222 46999988766543 4567777 6777899999976543
No 97
>smart00258 SAND SAND domain.
Probab=93.49 E-value=0.064 Score=48.41 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=39.6
Q ss_pred eCCeeEeeCcCCCCCeecChhhhhhccccc-cCCcccceeccCCccHHHHHHH
Q 002450 260 RDGGILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYICFENGKSLLEVLRA 311 (920)
Q Consensus 260 ~~~GilC~C~~C~~~~vvs~s~FE~HAGs~-~~~p~~~I~LenG~SL~~v~~a 311 (920)
...|+++-|..+++ +-+||.+||.|||.. +++=-..| --||.+|+.+|+.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sI-R~~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSI-RCGGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchhe-eECCccHHHHHHc
Confidence 45589999999987 899999999999974 55533444 4579999999875
No 98
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=93.41 E-value=0.036 Score=66.94 Aligned_cols=50 Identities=32% Similarity=0.830 Sum_probs=41.6
Q ss_pred cccccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcch
Q 002450 628 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 628 e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
+.-.|.+|+..|-+ ...+|++||.|.-..|+.|+. +.++|+|.|.| ..|.
T Consensus 270 edviCDvCrspD~e----~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 270 EDVICDVCRSPDSE----EANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCA 319 (893)
T ss_pred ccceeceecCCCcc----ccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcc
Confidence 33579999987743 468999999999999999994 67899999999 6774
No 99
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.66 E-value=0.68 Score=43.28 Aligned_cols=64 Identities=8% Similarity=-0.172 Sum_probs=55.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEc
Q 002450 788 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 852 (920)
Q Consensus 788 fY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp 852 (920)
....++..+|++||++..-.++ +.+..-+.++.++|++.+.|..|+..+.+.+.+.|++.+=+-
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g 134 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFG 134 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 4556677899999999776666 688899999999999999999999999999999999887543
No 100
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=92.60 E-value=0.16 Score=53.19 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=49.1
Q ss_pred eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcC-ccEEEE--cChhhhHHHHHhccCcEEcChHH
Q 002450 811 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVL--PAAEEAESIWTDKFGFKKIDPEL 874 (920)
Q Consensus 811 ~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~Lg-Ve~Lvl--pA~~ea~~~Wt~kFGF~~i~~~e 874 (920)
++.-+-.++|.+.||..|+|+.|++.+.+.....+ .+++++ .|..+..-.|.+++||+.+..-.
T Consensus 88 ~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~ 154 (187)
T KOG3138|consen 88 RVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLK 154 (187)
T ss_pred ceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccc
Confidence 36778999999999999999999999999998888 555444 34444444444469999876543
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.26 E-value=0.059 Score=65.46 Aligned_cols=33 Identities=33% Similarity=0.972 Sum_probs=28.1
Q ss_pred CcccCCCCCccCcchhccccccccc--CCCCCCCccCccch
Q 002450 546 GIICHCCNSEVSPSQFEAHAECASL--SSIPQGDWYCKYCQ 584 (920)
Q Consensus 546 GI~CdCCn~evcPS~FEaHa~CL~L--esIPsGdW~Cp~C~ 584 (920)
+|+|+.||+.+ | |..||++ ..+|-+.|||++|.
T Consensus 230 LLLCDsCN~~~----Y--H~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 230 LLLCDSCNKVY----Y--HVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred heeecccccce----e--eccccCcccccccccceecCcch
Confidence 58999999851 4 9999996 46999999999995
No 103
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.35 E-value=0.047 Score=42.83 Aligned_cols=33 Identities=36% Similarity=1.075 Sum_probs=18.6
Q ss_pred CceeecCCCCCccccccCccCcCCccCCCCCc-ceeecCcc
Q 002450 648 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 687 (920)
Q Consensus 648 ~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g-~WFC~~~C 687 (920)
+.|+.|+.|.-..|..|+.- ..+|.+ +|+| ..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC-CcC
Confidence 47999999999999999953 455655 7999 566
No 104
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=89.98 E-value=0.14 Score=47.01 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.0
Q ss_pred eEEEEe-----CCeeEeeCcCCCCCeecChhhhhhccccc-cCCcccceeccCCccHHHHHHH
Q 002450 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYICFENGKSLLEVLRA 311 (920)
Q Consensus 255 L~G~I~-----~~GilC~C~~C~~~~vvs~s~FE~HAGs~-~~~p~~~I~LenG~SL~~v~~a 311 (920)
++|++. ..|+...|-.+. .+-+||.+||.|||.. +|+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 467665 345556677777 6799999999999985 5544456776 99999998874
No 105
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=89.74 E-value=0.22 Score=61.06 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=30.3
Q ss_pred CCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcch
Q 002450 647 PRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 647 ~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
...+..|+.|+++||..|+++ .+..++..-|.| ..|.
T Consensus 186 ~~k~~~~a~~~~r~~~~~iKp----e~~~i~rii~~~-~s~~ 222 (696)
T KOG0383|consen 186 KGKLVPYADLEERFLLYGIKP----EWMPIARIINRR-SSQK 222 (696)
T ss_pred Cccccccccchhhhhheeccc----cccccchhhhhh-cccc
Confidence 467888999999999999999 456677888888 5675
No 106
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=89.73 E-value=0.07 Score=67.01 Aligned_cols=113 Identities=22% Similarity=0.350 Sum_probs=68.5
Q ss_pred CCCcccCCCCCccCcchhccccccccc--CCCCCCCccCccchhhhhhccccccchhhhhccccCCCChhhH-Hh-hhhh
Q 002450 544 GLGIICHCCNSEVSPSQFEAHAECASL--SSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQ-IT-KRCI 619 (920)
Q Consensus 544 gdGI~CdCCn~evcPS~FEaHa~CL~L--esIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~gvD~~e~-i~-~RC~ 619 (920)
++..+|.- ||.-+ |.+|... ..+|+..|-|--|.. ++ .| |-++++-+.+. .. .|+.
T Consensus 354 ~~~lc~Et-----~prvv--hlEcv~hP~~~~~s~~~e~evc~~--hk-------vn----gvvd~vl~~~K~~~~iR~~ 413 (1414)
T KOG1473|consen 354 GDLLCCET-----CPRVV--HLECVFHPRFAVPSAFWECEVCNI--HK-------VN----GVVDCVLPPSKNVDSIRHT 413 (1414)
T ss_pred cceeeccc-----CCceE--EeeecCCccccCCCccchhhhhhh--hc-------cC----cccccccChhhcccceecc
Confidence 44555544 57777 9999874 579999999998852 21 11 11112211110 00 0111
Q ss_pred -----hhhccccccccccccccCCCCCCCCCCCCceeecCC-CCCcccc-ccCccCcCCccCCCCCcceeecCcch
Q 002450 620 -----RIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 620 -----R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQ-Cer~YHv-~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
|.-..-......|.||+. +++.+.|+. |++.||. .||+..-. -..++++-|+| ++|-
T Consensus 414 ~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~-~ee~ 477 (1414)
T KOG1473|consen 414 PIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWER-REEI 477 (1414)
T ss_pred CCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhh-HHHH
Confidence 110111223457999986 578999998 9999999 99984211 13578999999 7884
No 107
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=89.66 E-value=1.8 Score=45.29 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=57.2
Q ss_pred EEEEEeeCCeEEEEEEEEE-eC----Ce--eeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHH
Q 002450 789 YCAILTVNSSVVSAGILRV-FG----QE--VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 861 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI-~G----~~--vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~W 861 (920)
|.++|.-.++||+.+++=. +. .+ +--+=+.=+.|+|||+|+++.+...+-+.+..-+ ...++-+...+..+|
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~-~N~~~~~~~~~~~~w 126 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVD-DNSVAQGNVKMSNFW 126 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCC-CceeeecCHHHHHHH
Confidence 5555555567888776633 31 23 4445555589999999999755554445555543 456667888899999
Q ss_pred HhccCcEEcCh
Q 002450 862 TDKFGFKKIDP 872 (920)
Q Consensus 862 t~kFGF~~i~~ 872 (920)
.+-|||..++.
T Consensus 127 ~k~~G~~~~~h 137 (181)
T PF06852_consen 127 HKMFGFDDYGH 137 (181)
T ss_pred HHHhCCCCCcc
Confidence 99999988877
No 108
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=88.90 E-value=0.55 Score=53.48 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=63.0
Q ss_pred ceeCceEEEEEeeCCeEEEEEEEEEe------CC---eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcC
Q 002450 783 QEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA 853 (920)
Q Consensus 783 ~~f~GfY~~VLe~~~~vVsaAslrI~------G~---~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA 853 (920)
+++.++|.+ ..+.+++| .|++. |. ..|=|-.||+-|+|||+|+-|+|+....+..+.-|+.-.+|-.
T Consensus 36 l~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 36 LAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred ccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 556667765 66777655 33332 44 4466778999999999999999999999999999999888765
Q ss_pred hhhhHHHHHhccCcEEcCh
Q 002450 854 AEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 854 ~~ea~~~Wt~kFGF~~i~~ 872 (920)
. ..++|. ||||..-+.
T Consensus 112 ~--s~~iYr-KfGye~asn 127 (389)
T COG4552 112 F--SGGIYR-KFGYEYASN 127 (389)
T ss_pred C--chhhHh-hccccccce
Confidence 3 566886 599986554
No 109
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=88.58 E-value=0.75 Score=51.14 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=49.0
Q ss_pred CcchHHHhhcCCCCCceEEEEcCCccccceeEEEEeCCe------eEeeCcCCCCCeecChhhhhhccccc-cCCcccce
Q 002450 225 PMTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDGG------ILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYI 297 (920)
Q Consensus 225 p~~vk~Ll~tGlLeG~~V~Y~~~~~~~~~~L~G~I~~~G------ilC~C~~C~~~~vvs~s~FE~HAGs~-~~~p~~~I 297 (920)
+.+...-..+.+++.+|-.+-.+.+-++....|+.+.-| |.|-|. -.-+||.+|=.|||.. .-||-.||
T Consensus 208 ~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 208 RTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred cccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 344444455666777776555443334566788877653 888888 5599999999999984 77999988
No 110
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=87.92 E-value=0.46 Score=55.66 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEEcCh
Q 002450 804 ILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 804 slrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
-|||+|..+..=. ....+|.||||+.||...|+.+++-+.+++.+-+.-.+..-|. ||||...++
T Consensus 445 elhvyg~~vpig~---~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 445 ELHVYGSEVPIGK---REDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred hhhcccccccccc---CcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 4668886443322 2578999999999999999999999999987777666666665 699987654
No 111
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=87.82 E-value=0.5 Score=48.57 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=42.5
Q ss_pred EeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEc---ChhhhHHHHHhccCcEE
Q 002450 814 ELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGFKK 869 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp---A~~ea~~~Wt~kFGF~~ 869 (920)
-+--+++.|+|||+|++..||+.+|+.....+.--+.|- .-.-|..+|++ |||.+
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~ 128 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSV 128 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceE
Confidence 345578899999999999999999999877654443333 33458999985 99975
No 112
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=86.82 E-value=0.28 Score=53.90 Aligned_cols=37 Identities=27% Similarity=0.767 Sum_probs=30.0
Q ss_pred CCCcccCCCCCccCcchhccccccccc--CCCCCCCccCccchhhh
Q 002450 544 GLGIICHCCNSEVSPSQFEAHAECASL--SSIPQGDWYCKYCQNMF 587 (920)
Q Consensus 544 gdGI~CdCCn~evcPS~FEaHa~CL~L--esIPsGdW~Cp~C~~~f 587 (920)
..+++||-|+. .| |..||.. ...|+|.|.|.-|...|
T Consensus 294 dqllfcddcdr-----gy--hmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 294 DQLLFCDDCDR-----GY--HMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ceeEeecccCC-----ce--eeEecCCCcCCCCCCchhHHHHHHHH
Confidence 45678999987 55 9999985 46799999999997654
No 113
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=86.65 E-value=1.7 Score=44.88 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=61.9
Q ss_pred EEEEEeeCCeEEEEEEEEEeC-----CeeeEeeeeeeccCccCCChhHHHHHHHHHH-hhhcCccEEEEcChh---hhHH
Q 002450 789 YCAILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKL-LSFLRVKSIVLPAAE---EAES 859 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G-----~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~-L~~LgVe~LvlpA~~---ea~~ 859 (920)
|++- ..+|+|||-.....+. ..-.-|-.+||...|||.|+++.||..-.+. +...+.+.+=|..+. .|..
T Consensus 44 yVA~-D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~ 122 (193)
T KOG3235|consen 44 YVAE-DENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALH 122 (193)
T ss_pred EEEE-cCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHH
Confidence 5552 2678999977766653 1134577999999999999999999875554 455666666666554 5799
Q ss_pred HHHhccCcEEcChH
Q 002450 860 IWTDKFGFKKIDPE 873 (920)
Q Consensus 860 ~Wt~kFGF~~i~~~ 873 (920)
.|++.+||.+.+-+
T Consensus 123 LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 123 LYKNTLGFVVCEVE 136 (193)
T ss_pred hhhhccceEEeecc
Confidence 99999999987653
No 114
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.58 E-value=0.3 Score=53.87 Aligned_cols=41 Identities=27% Similarity=0.800 Sum_probs=32.9
Q ss_pred eecceecCCCcccCCCCCccCcchhcccccccccCCCCCCCccCcc-ch
Q 002450 537 LLEGYKNGLGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKY-CQ 584 (920)
Q Consensus 537 lL~G~ktgdGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~-C~ 584 (920)
.++-.+..+-++||-|+. .| |.-|++|..+|+|.|-|.. |.
T Consensus 320 C~~P~~E~E~~FCD~CDR-----G~--HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 320 CLGPVIESEHLFCDVCDR-----GP--HTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred cCCcccchheeccccccC-----CC--CccccccccccCccchhhhHHH
Confidence 355566777788888876 67 9999999999999999983 43
No 115
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=85.50 E-value=0.41 Score=57.76 Aligned_cols=97 Identities=25% Similarity=0.513 Sum_probs=54.0
Q ss_pred CcccCCCCCccCcchhccccccccc--CCCCCCCccCccchhhhhhccccccchhhhhccccCCCChhhHHhhhhhhhhc
Q 002450 546 GIICHCCNSEVSPSQFEAHAECASL--SSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVK 623 (920)
Q Consensus 546 GI~CdCCn~evcPS~FEaHa~CL~L--esIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~gvD~~e~i~~RC~R~vk 623 (920)
+.+|+.|+. +| |-.|..+ ..||+|.|+|+.|..-..-+-.+..+.+.|-.+. .+ .--|+
T Consensus 83 f~~Ck~cDv-----sy--h~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~-------~~-~~~c~---- 143 (694)
T KOG4443|consen 83 FLLCKRCDV-----SY--HCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGY-------LQ-CAPCA---- 143 (694)
T ss_pred ccccccccc-----cc--cccccCCccccccCcccccHHHHhhhhccccccccchhhhccC-------cc-ccccc----
Confidence 467888865 67 9889874 6899999999998521111111111111111000 00 00111
Q ss_pred cccccccccccccCCCCCCCCCCCCceeecCCCCCccccccCccC
Q 002450 624 NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 668 (920)
Q Consensus 624 ~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~ 668 (920)
....|.+|-..-.. ...-.++.|++|.+.-|-.|-.-.
T Consensus 144 ----s~~~cPvc~~~Y~~---~e~~~~~~c~~c~rwsh~~c~~~s 181 (694)
T KOG4443|consen 144 ----SLSYCPVCLIVYQD---SESLPMVCCSICQRWSHGGCDGIS 181 (694)
T ss_pred ----ccccCchHHHhhhh---ccchhhHHHHHhcccccCCCCccc
Confidence 12457777542111 012345899999999999998653
No 116
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=84.90 E-value=1.7 Score=45.30 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=54.8
Q ss_pred CceEEEEEeeCCeEEEEEEEEEeCCeeeEee-----eeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhh
Q 002450 786 GGMYCAILTVNSSVVSAGILRVFGQEVAELP-----LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEA 857 (920)
Q Consensus 786 ~GfY~~VLe~~~~vVsaAslrI~G~~vAElp-----lvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea 857 (920)
.-.|-++-+ ++++||...||-.=.+ ..++ --+|+|.-||+||++.++.-..+.++.||++.+.+-++.+-
T Consensus 68 ~~~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN 142 (174)
T COG3981 68 ASTYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDN 142 (174)
T ss_pred ceeEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 335666655 8999999999975211 1222 23589999999999999999999999999999998887653
No 117
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=79.61 E-value=0.6 Score=61.44 Aligned_cols=36 Identities=42% Similarity=0.933 Sum_probs=30.0
Q ss_pred CCCcccCCCCCccCcchhcccccccc--cCCCCCCCccCccchhh
Q 002450 544 GLGIICHCCNSEVSPSQFEAHAECAS--LSSIPQGDWYCKYCQNM 586 (920)
Q Consensus 544 gdGI~CdCCn~evcPS~FEaHa~CL~--LesIPsGdW~Cp~C~~~ 586 (920)
..-+.|+.|++ .| |..|++ +.++|.|+|+||.|+..
T Consensus 1121 ~~m~lc~~c~~-----~~--h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1121 EKMLLCDECLS-----GF--HLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhHhhhh-----hH--HHHhhhhhhccCCcCCccCCccchh
Confidence 45677888866 67 999998 57999999999999854
No 118
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=76.58 E-value=15 Score=39.86 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=48.3
Q ss_pred eeeEeeeeeeccCccCC--------C--------------------hhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 811 EVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 811 ~vAElplvAT~~~yqgq--------G--------------------~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
+++|+=-+|+.++||+. | +...|+.++-+.....|+++++.-+.+.+..++.
T Consensus 110 ~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~ 189 (241)
T TIGR03694 110 RIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS 189 (241)
T ss_pred ceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH
Confidence 68899999999999974 2 3467999999999999999999999888777775
Q ss_pred hccCcEE
Q 002450 863 DKFGFKK 869 (920)
Q Consensus 863 ~kFGF~~ 869 (920)
++||..
T Consensus 190 -r~G~~~ 195 (241)
T TIGR03694 190 -RFGIQF 195 (241)
T ss_pred -HhCCce
Confidence 599653
No 119
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=75.32 E-value=4.1 Score=42.67 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=46.0
Q ss_pred eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccC
Q 002450 811 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFG 866 (920)
Q Consensus 811 ~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFG 866 (920)
=+||+=|.|++|+.+|.|+++.| ..+--.|+.|||..-|---+..+..-.++ |+
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R-~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER-LC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH-Hh
Confidence 37999999999999999999976 68999999999998887777777776664 44
No 120
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=73.97 E-value=6.1 Score=37.64 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCeEEEEEEEEEeC--CeeeEeeeeeeccCccCCChhHHHHHHHHHHh
Q 002450 796 NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 841 (920)
Q Consensus 796 ~~~vVsaAslrI~G--~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L 841 (920)
++...++|.+.--+ ..++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 16 ~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 16 SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 45566777775533 58999999999999999999999999998774
No 121
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.55 E-value=2.8 Score=36.13 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=28.8
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcC
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKM 670 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~ 670 (920)
..|.+|++.- ...++++.|..|...||-.|+...+.
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g~ 41 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAGG 41 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCCc
Confidence 4699999842 13678999999999999999977543
No 122
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=70.51 E-value=2.4 Score=54.23 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=39.5
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcch
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 688 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~ 688 (920)
+-|.+|.+ .+.+++|..|++.||..|..+ |+.++|+..|-| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 47999976 468999999999999999998 788999999999 5664
No 123
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=68.16 E-value=14 Score=41.12 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=61.4
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhh--hHHHHHhccCc
Q 002450 791 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFGF 867 (920)
Q Consensus 791 ~VLe-~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~e--a~~~Wt~kFGF 867 (920)
.+++ .+|++|+++.+-.++ +.+.....|+.++|++.+-.-+|+-++.+.+.+-|++.+=+=.... -.-.++++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 3446 688999888876665 4455568889999999999999999999999999999987654322 23347778999
Q ss_pred EEcC
Q 002450 868 KKID 871 (920)
Q Consensus 868 ~~i~ 871 (920)
.+++
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 124
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.80 E-value=8.3 Score=46.83 Aligned_cols=94 Identities=18% Similarity=0.322 Sum_probs=51.7
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCcc-CcC---CccCCCCCcceeecCcchhHHHHHHHhhhccc-cc
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK-HKM---ADLRELPKGKWFCCMDCSRINSVLQNLLVQEA-EK 704 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p-~~~---~~L~evP~g~WFC~~~C~~I~~~LqkLl~~g~-e~ 704 (920)
+.|.-|+..+ ..--.||.|++.|+..+|.. ... ....-..+..||= .=......|.+.+..++ ..
T Consensus 143 g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf--~L~~~~~~L~~~~~~~~~~~ 212 (558)
T COG0143 143 GTCPKCGGED--------ARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFF--RLSKFQDKLLEWYESNPDFI 212 (558)
T ss_pred ccCCCcCccc--------cCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEE--EHHHhHHHHHHHHHhCcccc
Confidence 4688887522 11236999999999988743 110 0001112445665 23355666777775554 34
Q ss_pred CchhHHHHhhhhccCcccc--cccCCceEEE
Q 002450 705 LPEFHLNAIKKYAGNSLET--VSDIDVRWRL 733 (920)
Q Consensus 705 lp~sll~~i~k~~~~g~~~--~~~~d~~W~L 733 (920)
.|.+..+...+..+.|+.. .++.++.|=+
T Consensus 213 ~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 213 WPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 6777666544455566642 2334677744
No 125
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=64.79 E-value=17 Score=34.75 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=33.3
Q ss_pred EEEEEEEeC-CeeeEeeeeeeccCccCCChhHHHHHHHHHHh
Q 002450 801 SAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 841 (920)
Q Consensus 801 saAslrI~G-~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L 841 (920)
++|.+.--. ..++-|-.+|+.+..||+|+++.|+++|-+..
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 455553322 36899999999999999999999999998874
No 126
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=61.80 E-value=56 Score=34.08 Aligned_cols=111 Identities=13% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCceEEEccCCCCCHHHHHHHHHHHHHHhhccCcccccCcCCCcchhhhccccC-----CCceeCceEEEEEee--CCeE
Q 002450 727 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 799 (920)
Q Consensus 727 ~d~~W~LL~gk~~~~e~~s~La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~-----~r~~f~GfY~~VLe~--~~~v 799 (920)
.+|.|.-+.= ++..-|.+.-+.+.|-|..=- |-.=..-|+.+| .-+.|.-.|.+-++. ++++
T Consensus 22 ~gF~W~~~dl-----~d~~~l~ely~lL~~nYVEDd------d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLDL-----NDDEELKELYELLNENYVEDD------DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE--T-----TSHHHHHHHHHHHHHHSSBTT------TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecCC-----CCHHHHHHHHHHHHhcCccCC------cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 4799987632 233456777777777663211 111112344432 223343445555554 6788
Q ss_pred EEE-----EEEEEeCC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccE
Q 002450 800 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 848 (920)
Q Consensus 800 Vsa-----AslrI~G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~ 848 (920)
||- +.+||++. +.+||=|+-++..+|.+++-=.|+.+|-+.+..-||-.
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 873 57888876 89999999999999999999999999999998888755
No 127
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=61.31 E-value=21 Score=37.96 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=22.2
Q ss_pred EeeeeeeccCccCCChhHHHHHHHHHHhhh
Q 002450 814 ELPLVATSKINHGKGYFQLLFACIEKLLSF 843 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~~IE~~L~~ 843 (920)
-|--|-|.|.|||+|+|+.|++.-=.+.+.
T Consensus 82 NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 82 NLSCILTLPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp EESEEEE-GGGTTSSHHHHHHHHHHHHHHH
T ss_pred eEeehhhcchhhhcchhhhhhhhHHHHhhc
Confidence 455678999999999999999865444443
No 128
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=60.66 E-value=4.7 Score=37.99 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=27.3
Q ss_pred cccccccCCCCCCCCCCCCceeecCC--CCCccccccCccCc
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 669 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQ--Cer~YHv~CL~p~~ 669 (920)
..|.+|+.. .+..+.|.. |...||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 479999873 467999998 99999999998754
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=57.74 E-value=15 Score=43.33 Aligned_cols=65 Identities=18% Similarity=0.455 Sum_probs=43.7
Q ss_pred ccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCC---ccCCC----CCcceeecCcch---hHHHHHHHhhh
Q 002450 631 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMA---DLREL----PKGKWFCCMDCS---RINSVLQNLLV 699 (920)
Q Consensus 631 ~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~---~L~ev----P~g~WFC~~~C~---~I~~~LqkLl~ 699 (920)
.|.+|.+.|++. ++-.-+.||-|....|..|.=.+.+. +...- .++.++| ..|. .++..+++.+-
T Consensus 130 ~C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~seLlG~vk~vf~ 204 (446)
T PF07227_consen 130 MCCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTSELLGFVKKVFQ 204 (446)
T ss_pred CccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChhhHHHHHHHHHH
Confidence 599999988764 34567999999999999998664421 11111 2345666 8996 55666666653
No 130
>PRK00756 acyltransferase NodA; Provisional
Probab=56.87 E-value=16 Score=38.23 Aligned_cols=48 Identities=21% Similarity=0.102 Sum_probs=39.0
Q ss_pred eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHH
Q 002450 811 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 859 (920)
Q Consensus 811 ~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~ 859 (920)
=+||+=+.|++|+.+|.|++..+ ..+--.|+.|||..-|--.++.+..
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~ 131 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRN 131 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHH
Confidence 58999999999999999999877 6888999999998665544444433
No 131
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=56.71 E-value=12 Score=42.98 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=43.3
Q ss_pred EEEEEeCCeeeEeeeeeecc-CccCCChhHHHHHHHHHHhhhc-CccEEEEcChhhhHHHHHhccCcEEcCh
Q 002450 803 GILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDP 872 (920)
Q Consensus 803 AslrI~G~~vAElplvAT~~-~yqgqG~gr~Lv~~IE~~L~~L-gVe~LvlpA~~ea~~~Wt~kFGF~~i~~ 872 (920)
--|||+|.- +|+-+-.+ .||.||||.+||++.|+.++.- |-.++-+-+--.....| +||||..-++
T Consensus 480 RELHVYGs~---vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY-~klGY~LdGP 547 (554)
T KOG2535|consen 480 RELHVYGSV---VPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYY-RKLGYELDGP 547 (554)
T ss_pred eeeeeccee---eecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHH-HhhCeeecCh
Confidence 356677742 33333333 4999999999999999998754 44455444434444555 4699987655
No 132
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=56.17 E-value=30 Score=40.50 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=53.5
Q ss_pred hccCcccccccCCceEEEccCCCCCHHHHHHHHHHHHHHhhccCcccccCcCCCcchhhhccccCCCceeCceEEEEEee
Q 002450 716 YAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV 795 (920)
Q Consensus 716 ~~~~g~~~~~~~d~~W~LL~gk~~~~e~~s~La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~~r~~f~GfY~~VLe~ 795 (920)
++..|-++....+++.-=+.|.. ++...+-|=.|.-.| +|..| +| .|...|.=.||..
T Consensus 184 rhPPG~EIYR~~~iSvfEVDG~~-----~k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte 241 (396)
T KOG2747|consen 184 RHPPGNEIYRKGNISVFEVDGRK-----QKLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTE 241 (396)
T ss_pred CCCCcceeeecCCEEEEEecCcc-----hhHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEe
Confidence 34556666666666665555554 345566666666666 23221 22 2444544444444
Q ss_pred CCeEEEEEEEEEeCCeeeE---eeeeeeccCccCCChhHHHHHH
Q 002450 796 NSSVVSAGILRVFGQEVAE---LPLVATSKINHGKGYFQLLFAC 836 (920)
Q Consensus 796 ~~~vVsaAslrI~G~~vAE---lplvAT~~~yqgqG~gr~Lv~~ 836 (920)
.|.. |++-++---..-+| +--|=|.|.|||+|||+.|++-
T Consensus 242 ~d~~-G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 242 CDSY-GCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred cCCc-ceeeeeccccccccccceeeeeecChhhhcccchhhhhh
Confidence 3322 22222111112223 6678899999999999999873
No 133
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=55.50 E-value=17 Score=40.79 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=22.3
Q ss_pred eeeeeeccCccCCChhHHHHHHHHHHhh
Q 002450 815 LPLVATSKINHGKGYFQLLFACIEKLLS 842 (920)
Q Consensus 815 lplvAT~~~yqgqG~gr~Lv~~IE~~L~ 842 (920)
+--|-|.|.|||+|||+.|++--=.+-+
T Consensus 158 LaCIltLPpyQrkGyG~~LI~fSYeLSr 185 (290)
T PLN03238 158 LACILTLPPYQRKGYGKFLISFAYELSK 185 (290)
T ss_pred EEEEEecChhhhccHhHhHHHHHhHHhh
Confidence 5567899999999999999986544433
No 134
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=55.46 E-value=46 Score=33.44 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=50.6
Q ss_pred EEEEeeCCeEEEEEEE--EEe-----CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHH
Q 002450 790 CAILTVNSSVVSAGIL--RVF-----GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 862 (920)
Q Consensus 790 ~~VLe~~~~vVsaAsl--rI~-----G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt 862 (920)
.+++..+|.+||-|.+ ++| .-.++|+=.+ ..|||+||||....+|-.+...+ -+-.+++--..|..+|.
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 3455678889987765 222 1245665444 47999999999999998875432 23456777778999998
Q ss_pred hccCcE
Q 002450 863 DKFGFK 868 (920)
Q Consensus 863 ~kFGF~ 868 (920)
+ |=+.
T Consensus 115 ~-~~~t 119 (143)
T COG5628 115 R-VAET 119 (143)
T ss_pred h-hhcc
Confidence 6 5544
No 135
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=55.19 E-value=7.3 Score=40.63 Aligned_cols=56 Identities=18% Similarity=0.491 Sum_probs=34.9
Q ss_pred cccccCCCCCCCCCCCCceeecCCCCCccccccCccCcC-Cc-cCCCCCccee--ecCcchhHH
Q 002450 632 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKM-AD-LRELPKGKWF--CCMDCSRIN 691 (920)
Q Consensus 632 C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~-~~-L~evP~g~WF--C~~~C~~I~ 691 (920)
|.+|+.... ...-+.|+.|-.|-.+||..||.+... +- .+.+..+++. | +.|-.++
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQC-r~Cig~~ 61 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQC-RRCIGIA 61 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEec-hhhcChh
Confidence 777854211 124579999999999999999988532 11 2334445443 4 5554444
No 136
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=53.56 E-value=80 Score=33.64 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhccCcccccCcCCCcchhhhccccCCCcee-CceEEEEEeeCCeEEEEEEEE--------------Ee-
Q 002450 745 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILR--------------VF- 808 (920)
Q Consensus 745 s~La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~~r~~f-~GfY~~VLe~~~~vVsaAslr--------------I~- 808 (920)
..+.++..+=|+.|- +. -|=++.. --|.+....|- .-.|.+.+..+|+|||++-|= ++
T Consensus 16 ~~l~~~~rLR~~VF~---~e-lgW~~~~--~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~ 89 (207)
T PRK13834 16 SLLKQMHRLRARVFG---GR-LGWDVSI--TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLP 89 (207)
T ss_pred HHHHHHHHHHHHHhc---cc-cCCCCCC--CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcC
Confidence 346666666666664 11 1222110 11223333333 235666666778999877540 11
Q ss_pred ------CCeeeEeeeeeeccCcc---CCC----hhHHHHHHHHHHhhhcCccEEEEcChhhhHHHHHhccCcEE
Q 002450 809 ------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 869 (920)
Q Consensus 809 ------G~~vAElplvAT~~~yq---gqG----~gr~Lv~~IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 869 (920)
..++.|+==+++.++++ +.+ +...|+..+-+.....|+++++.-+.+....++. ++||..
T Consensus 90 ~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~ 162 (207)
T PRK13834 90 AGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPM 162 (207)
T ss_pred CCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCe
Confidence 34789999999998853 222 5578999999999999999999887776777664 589764
No 137
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=52.84 E-value=5 Score=35.71 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=13.4
Q ss_pred ccccccCCCCCCCCCCCCceeecC--CCCCccccccCcc
Q 002450 631 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 667 (920)
Q Consensus 631 ~C~vC~~~df~~sgf~~~~LLlCD--QCer~YHv~CL~p 667 (920)
.|.||...-. ..+....+.|+ +|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 5999976422 11234568998 9999999999976
No 138
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=51.26 E-value=7.7 Score=35.10 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.1
Q ss_pred cccccccCCCCCCCCCCCCceeecCC--CCCccccccCccCc
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 669 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQ--Cer~YHv~CL~p~~ 669 (920)
..|.+|+.. .|..+.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 379999872 267888986 99999999998754
No 139
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=49.34 E-value=36 Score=35.28 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=38.5
Q ss_pred eEeeeeeeccCccCCChhHHHHHHHHHHh-hhcCccEEEEcCh---hhhHHHHHhccCcEEc
Q 002450 813 AELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAA---EEAESIWTDKFGFKKI 870 (920)
Q Consensus 813 AElplvAT~~~yqgqG~gr~Lv~~IE~~L-~~LgVe~LvlpA~---~ea~~~Wt~kFGF~~i 870 (920)
+|+-+.--.|..||+|+|+-.|.++.... ..|++.++.+-.. .....++ +||+|.-+
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lF-kk~~f~q~ 168 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLF-KKFLFTQV 168 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHH-HHhhheee
Confidence 44444555689999999998888888775 3467777666542 2234455 46999854
No 140
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=46.98 E-value=50 Score=33.66 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=43.4
Q ss_pred CccCCChhHHHHHHHHHHhhhcCccEEEEc----ChhhhHHHHHhccCcEEcChHHHH
Q 002450 823 INHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELLS 876 (920)
Q Consensus 823 ~yqgqG~gr~Lv~~IE~~L~~LgVe~Lvlp----A~~ea~~~Wt~kFGF~~i~~~el~ 876 (920)
.-||.|.+|+|..-+-..+..-|-.+|+|- -..++...+...|||+.+++.+..
T Consensus 95 ~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 95 RARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred cccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 458999999999999999988888888763 223466677778999999987643
No 141
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=45.12 E-value=38 Score=35.63 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=56.4
Q ss_pred eCCeEEEEEEEEEeC----------------------------CeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCc
Q 002450 795 VNSSVVSAGILRVFG----------------------------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV 846 (920)
Q Consensus 795 ~~~~vVsaAslrI~G----------------------------~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgV 846 (920)
.+|++++|+-+|.-. ..++||=-+|.. +.|..+.|+..+-..|...|.
T Consensus 42 ~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~ 117 (179)
T PF12261_consen 42 SDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGF 117 (179)
T ss_pred CCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCC
Confidence 467888888888754 245555544443 589999999999999999999
Q ss_pred cEEEEcChhhhHHHHHhccCcEEc
Q 002450 847 KSIVLPAAEEAESIWTDKFGFKKI 870 (920)
Q Consensus 847 e~LvlpA~~ea~~~Wt~kFGF~~i 870 (920)
+-++.-+.+.+..+..+ +|+...
T Consensus 118 ~w~vfTaT~~lr~~~~r-lgl~~~ 140 (179)
T PF12261_consen 118 EWVVFTATRQLRNLFRR-LGLPPT 140 (179)
T ss_pred CEEEEeCCHHHHHHHHH-cCCCce
Confidence 99999999999998885 887543
No 142
>PLN03239 histone acetyltransferase; Provisional
Probab=45.04 E-value=25 Score=40.56 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=21.7
Q ss_pred eeeeeeccCccCCChhHHHHHHHHHHh
Q 002450 815 LPLVATSKINHGKGYFQLLFACIEKLL 841 (920)
Q Consensus 815 lplvAT~~~yqgqG~gr~Lv~~IE~~L 841 (920)
|--|-|.|.|||+|||+.|++--=.+-
T Consensus 216 LaCIltLPpyQrkGyG~lLI~fSYeLS 242 (351)
T PLN03239 216 LACILTFPAHQRKGYGRFLIAFSYELS 242 (351)
T ss_pred eEEEEecChhhhcchhhhhHhhhhHhh
Confidence 566789999999999999997544433
No 143
>PTZ00064 histone acetyltransferase; Provisional
Probab=44.68 E-value=25 Score=42.31 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=21.6
Q ss_pred EeeeeeeccCccCCChhHHHHHHHHHH
Q 002450 814 ELPLVATSKINHGKGYFQLLFACIEKL 840 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~~IE~~ 840 (920)
-|--|-|.|.|||+|||+.|++--=.+
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeL 412 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKL 412 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhh
Confidence 355678999999999999999754444
No 144
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=43.18 E-value=20 Score=44.68 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=35.7
Q ss_pred CcCCCcchhhhccccCCCceeCceEEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHH
Q 002450 765 ISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKL 840 (920)
Q Consensus 765 rtgrDLI~~mVyg~~~~r~~f~GfY~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~ 840 (920)
+.+-||||..|- ..|.+-+|.++| | |+|--|||+|+||+-|||.+-+.-+.+.
T Consensus 590 ~a~GdlIpW~vs-eQf~D~~F~~l~-------------------G---aRIVRIAvhP~y~~MGYGsrAvqLL~~y 642 (1011)
T KOG2036|consen 590 RAAGDLIPWTVS-EQFQDEDFPKLS-------------------G---ARIVRIAVHPEYQKMGYGSRAVQLLTDY 642 (1011)
T ss_pred cccCCccceehh-hhhcccchhccc-------------------C---ceEEEEEeccchhccCccHHHHHHHHHH
Confidence 345688887764 234444554443 2 4455679999999999998877766654
No 145
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=42.69 E-value=1.5e+02 Score=31.11 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=59.1
Q ss_pred ceEEEEEeeCCeEEEEEEEEEe---------------------CCeeeEeeeeeeccCccC------CChhHHHHHHHHH
Q 002450 787 GMYCAILTVNSSVVSAGILRVF---------------------GQEVAELPLVATSKINHG------KGYFQLLFACIEK 839 (920)
Q Consensus 787 GfY~~VLe~~~~vVsaAslrI~---------------------G~~vAElplvAT~~~yqg------qG~gr~Lv~~IE~ 839 (920)
-.|.+++. +|+|+|++-|.-. +.++-|+=-+++.++..+ .-+...|+.++-+
T Consensus 45 ~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e 123 (182)
T PF00765_consen 45 AVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVE 123 (182)
T ss_dssp -EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHH
T ss_pred CeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHH
Confidence 35777654 5999998766421 147888888898887432 2357899999999
Q ss_pred HhhhcCccEEEEcChhhhHHHHHhccCcEE
Q 002450 840 LLSFLRVKSIVLPAAEEAESIWTDKFGFKK 869 (920)
Q Consensus 840 ~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 869 (920)
...+.|++.++.-+..-.+.++.+ +||..
T Consensus 124 ~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 124 FALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 999999999999888777777765 99974
No 146
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.49 E-value=21 Score=37.81 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=34.1
Q ss_pred ccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHHH
Q 002450 631 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINS 692 (920)
Q Consensus 631 ~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~~ 692 (920)
.|.+|...+ -+=.|+.+....|..|..-||..|+... -| +.|.++..
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~~-------------~C-pkC~R~~~ 200 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRKK-------------SC-PKCARRQK 200 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCCC-------------CC-CCcHhHhc
Confidence 588887643 1123566788999999999999999641 27 89987643
No 147
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=40.38 E-value=25 Score=41.81 Aligned_cols=23 Identities=30% Similarity=0.311 Sum_probs=19.8
Q ss_pred eeeeeeccCccCCChhHHHHHHH
Q 002450 815 LPLVATSKINHGKGYFQLLFACI 837 (920)
Q Consensus 815 lplvAT~~~yqgqG~gr~Lv~~I 837 (920)
|--|-|.|.|||+|||+.|++--
T Consensus 309 LaCIltlP~yQrkGyG~~LI~~S 331 (450)
T PLN00104 309 LACILTLPPYQRKGYGKFLIAFS 331 (450)
T ss_pred eEEEEecchhhhcchhheehhhe
Confidence 56778999999999999998743
No 148
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=38.12 E-value=29 Score=40.83 Aligned_cols=190 Identities=22% Similarity=0.258 Sum_probs=95.2
Q ss_pred cccccccchhhHHhhhcccccceeEEeeEeeEEEEEEeccCCCCCCcccccchhhhhhhhcccccchHHHHHHHhhhccc
Q 002450 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (920)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (920)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-+-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 888643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHHhhCCCCCCccCCCCCccceeecCCCCcccc--cCCccc-----ccccccccCCCC
Q 002450 101 ILESVVEEEN-QLVQMTVENVIEETVKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNKK-----CLKRPSAMKPKV 172 (920)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~trs~lk~kv 172 (920)
..++| ++.|=||..++|| |+.-+- |-..|.+|-+.. +++..= -+|+||+-++||
T Consensus 158 -----~slpNV~~eeGtV~sLlee------------~gvvkG-V~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v 219 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLEE------------EGVVKG-VTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV 219 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHhc------------cCeEEe-EEEecCCCceEEEecceEEEecchhHHHHHHhcCCcc
Confidence 12222 2223355444433 332111 223333333333 354422 468899999999
Q ss_pred cccccccccc--cCCCCC-----ccchhhH-----------hhh---hcCCCCCCCCcccccccc-cccccCCCCcchHH
Q 002450 173 EPVEVLVTQS--EGFGNE-----SMSLIEV-----------EAI---AEGSALTSPKKNLELKMS-KKISLNKKPMTVTE 230 (920)
Q Consensus 173 e~~~~~~~~~--e~~~~~-----~~~~~~~-----------~~~---~~~s~~~~~~~~~~~k~~-kk~~~~~~p~~vk~ 230 (920)
+++.+.-.+. ++-... -+...+. |.. +..++.-|+-.|.||+.. |+..--..|..+++
T Consensus 220 ~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~ 299 (509)
T KOG1298|consen 220 EEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRE 299 (509)
T ss_pred cccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHH
Confidence 9875543322 111000 0000000 000 011334455567676543 44445568899999
Q ss_pred HhhcCCCCC----ceEEEEcC
Q 002450 231 LFETGLLDG----VSVVYMGG 247 (920)
Q Consensus 231 Ll~tGlLeG----~~V~Y~~~ 247 (920)
-+..++=+| +|=+||..
T Consensus 300 ~F~~av~~g~irsmpn~~mpa 320 (509)
T KOG1298|consen 300 SFLEAVDEGNIRSMPNSSMPA 320 (509)
T ss_pred HHHHHhhccchhcCccccCCC
Confidence 866555544 55555544
No 149
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=37.82 E-value=25 Score=42.05 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=22.1
Q ss_pred CCcccCCCCCccCcchhcccccccccCCCCCCCccCccchhh
Q 002450 545 LGIICHCCNSEVSPSQFEAHAECASLSSIPQGDWYCKYCQNM 586 (920)
Q Consensus 545 dGI~CdCCn~evcPS~FEaHa~CL~LesIPsGdW~Cp~C~~~ 586 (920)
.+.+|..|++..||. |...+ | ..||||+|...
T Consensus 4 ~L~fC~~C~~irc~~-------c~~~E-i--~~~yCp~CL~~ 35 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPR-------CVSEE-I--DSYYCPNCLFE 35 (483)
T ss_pred cceecccccccCChh-------hcccc-c--ceeECcccccc
Confidence 467899999877764 44422 1 27999999743
No 150
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=36.27 E-value=29 Score=31.41 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=22.7
Q ss_pred eeeeeeccCccCCChhHHHHHHHHHHh
Q 002450 815 LPLVATSKINHGKGYFQLLFACIEKLL 841 (920)
Q Consensus 815 lplvAT~~~yqgqG~gr~Lv~~IE~~L 841 (920)
|.-|=|.+.+||+|+.+.|++++-+..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 445568999999999999999988764
No 151
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.68 E-value=14 Score=45.04 Aligned_cols=38 Identities=29% Similarity=0.629 Sum_probs=28.9
Q ss_pred CCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHHHHH
Q 002450 645 FGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 694 (920)
Q Consensus 645 f~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~~~L 694 (920)
|..+...-|+.|...||..|++...+ - | |.|.++..+=
T Consensus 526 F~~~~~~rC~~C~avfH~~C~~r~s~-------~----C-PrC~R~q~r~ 563 (580)
T KOG1829|consen 526 FETRNTRRCSTCLAVFHKKCLRRKSP-------C----C-PRCERRQKRA 563 (580)
T ss_pred cccccceeHHHHHHHHHHHHHhccCC-------C----C-CchHHHHHHh
Confidence 55677889999999999999986321 1 5 8998876543
No 152
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=34.60 E-value=28 Score=44.54 Aligned_cols=49 Identities=31% Similarity=0.861 Sum_probs=38.6
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhH
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 690 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I 690 (920)
..|..|.+.. ....+ .|+.|...||..|..+ +++.++.+.|.| +.|...
T Consensus 156 ~~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 4688887732 12334 9999999999999998 788999999998 678543
No 153
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=33.54 E-value=1.8e+02 Score=29.18 Aligned_cols=61 Identities=5% Similarity=0.013 Sum_probs=46.4
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002450 789 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 850 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe~Lv 850 (920)
+-.-...+|++|+||.+.+...-+.-|-.+ =.|++....+|...+-.-.+.++.+|.+.+.
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~f-yDPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTF-YDPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeee-eCCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 333345899999999999875544433333 2788999999998888888888999999987
No 154
>PRK14852 hypothetical protein; Provisional
Probab=31.46 E-value=1.3e+02 Score=39.20 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=63.3
Q ss_pred EEEEEeeCCeEEEEEEEEEe----------------------CCeeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCc
Q 002450 789 YCAILTVNSSVVSAGILRVF----------------------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV 846 (920)
Q Consensus 789 Y~~VLe~~~~vVsaAslrI~----------------------G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgV 846 (920)
+++++...+++|+..++.+- |..++|+--+|+.+..|.+=+--.|+..+-......++
T Consensus 76 ~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~ 155 (989)
T PRK14852 76 SVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEV 155 (989)
T ss_pred eEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCC
Confidence 44555555666666665442 35899999999977666655555666666555566799
Q ss_pred cEEEEcChhhhHHHHHhccCcEEcChH
Q 002450 847 KSIVLPAAEEAESIWTDKFGFKKIDPE 873 (920)
Q Consensus 847 e~LvlpA~~ea~~~Wt~kFGF~~i~~~ 873 (920)
..+++--.|.-..||++-|||+.+++.
T Consensus 156 dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 156 DDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEEEECcchHHHHHHHhCCcccccc
Confidence 999999999999999999999999864
No 155
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.50 E-value=25 Score=40.57 Aligned_cols=46 Identities=30% Similarity=0.720 Sum_probs=31.9
Q ss_pred cccccccCCCCCCCCCCCCceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchh
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 689 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~ 689 (920)
..|.||-+ | |..|+.+.=-=|..+||..|.++. |. ...=|| |-|+.
T Consensus 230 ~~CaIClE-d-----Y~~GdklRiLPC~H~FH~~CIDpW----L~---~~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLE-D-----YEKGDKLRILPCSHKFHVNCIDPW----LT---QTRTFC-PVCKR 275 (348)
T ss_pred ceEEEeec-c-----cccCCeeeEecCCCchhhccchhh----Hh---hcCccC-CCCCC
Confidence 48999987 3 344555555789999999999982 21 112378 79975
No 156
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=28.92 E-value=38 Score=30.25 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeeEeeEEEEEEeccCCCCCCccc
Q 002450 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (920)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (920)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 157
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=27.29 E-value=83 Score=36.37 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=44.8
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeeEeeeeeeccCccCCCh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKGY 829 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-G-----------------------------------~~vAElplvAT~~~yqgqG~ 829 (920)
.|..|||. .|+|||++.|..- | +...||-.+-.+|+||+-|.
T Consensus 59 ~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~ 138 (342)
T PF04958_consen 59 GYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGN 138 (342)
T ss_dssp EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHH
T ss_pred ceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCch
Confidence 39999995 6899999876431 2 35678888889999999999
Q ss_pred hHHHHHHHHHHh---hhcCccEEEEc----Chh-hhHHHHHhccC
Q 002450 830 FQLLFACIEKLL---SFLRVKSIVLP----AAE-EAESIWTDKFG 866 (920)
Q Consensus 830 gr~Lv~~IE~~L---~~LgVe~Lvlp----A~~-ea~~~Wt~kFG 866 (920)
|++|-.+=--.+ +..==++++.- .++ .-.+||.. +|
T Consensus 139 G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWda-lG 182 (342)
T PF04958_consen 139 GRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWDA-LG 182 (342)
T ss_dssp HHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHHH-TG
T ss_pred HHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHHH-hh
Confidence 988755422111 11112344432 222 35899984 44
No 158
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=26.02 E-value=32 Score=39.72 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.8
Q ss_pred EeeeeeeccCccCCChhHHHHH
Q 002450 814 ELPLVATSKINHGKGYFQLLFA 835 (920)
Q Consensus 814 ElplvAT~~~yqgqG~gr~Lv~ 835 (920)
-+--|-|.|.|||+|||..|++
T Consensus 264 NLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 264 NLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred ceEEEEecChhHhcccceEeee
Confidence 3556789999999999999875
No 159
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=25.77 E-value=17 Score=42.75 Aligned_cols=78 Identities=28% Similarity=0.655 Sum_probs=43.6
Q ss_pred ccCCCCCccCcc---------hhcccccccccCCCCCCCccCccchhhhhhccccccchhhhhccccCCCChhhHHhhhh
Q 002450 548 ICHCCNSEVSPS---------QFEAHAECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRC 618 (920)
Q Consensus 548 ~CdCCn~evcPS---------~FEaHa~CL~LesIPsGdW~Cp~C~~~f~~ek~~~~n~Na~aag~i~gvD~~e~i~~RC 618 (920)
.|-.|+++|.+. .| |..|.. |..|+..+...-|+..+... +...|
T Consensus 276 iC~~C~K~V~g~~~ac~Am~~~f--Hv~CFt----------C~~C~r~L~Gq~FY~v~~k~--------------~CE~c 329 (468)
T KOG1701|consen 276 ICAFCHKTVSGQGLAVEAMDQLF--HVQCFT----------CRTCRRQLAGQSFYQVDGKP--------------YCEGC 329 (468)
T ss_pred hhhhcCCcccCcchHHHHhhhhh--ccccee----------hHhhhhhhccccccccCCcc--------------cchHH
Confidence 788999987764 47 887754 78887654433343221111 11112
Q ss_pred hhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCccccccCc
Q 002450 619 IRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 666 (920)
Q Consensus 619 ~R~vk~~e~e~~~C~vC~~~df~~sgf~~~~LLlCDQCer~YHv~CL~ 666 (920)
-. ...+.|..|+..- .+.|| --|.++||.+|..
T Consensus 330 yq------~tlekC~~Cg~~I-------~d~iL--rA~GkayHp~CF~ 362 (468)
T KOG1701|consen 330 YQ------DTLEKCNKCGEPI-------MDRIL--RALGKAYHPGCFT 362 (468)
T ss_pred HH------HHHHHHhhhhhHH-------HHHHH--HhcccccCCCceE
Confidence 11 1123588887631 12333 3578999999974
No 160
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=25.68 E-value=47 Score=33.07 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=38.6
Q ss_pred eccCccCCChhHHHHHHHHHHhhhcCccEEEEcChhh-hHHHHHhccCcEEcChHHHHHHHHhCcceeeecC
Q 002450 820 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE-AESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKG 890 (920)
Q Consensus 820 T~~~yqgqG~gr~Lv~~IE~~L~~LgVe~LvlpA~~e-a~~~Wt~kFGF~~i~~~el~~~~~~~~~~~~F~G 890 (920)
|.+..||+|+|+.|++.+.+. ..+....+-++-..+ +.+|..+-+|-+..-+. .-|+++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~-e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ipQ--------~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQE-ENVSPHQLAIDRPSPKLLSFLKKHYGLQRYIPQ--------SNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHH-cCCCcccceecCCcHHHHHHHHHhcCCCcCCCC--------CccEEEehH
Confidence 789999999999999988776 333344444443222 45655555666543221 136677765
No 161
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.72 E-value=21 Score=31.93 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeeEeeEEEEEEeccCCCCCCcc
Q 002450 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (920)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (920)
=-+|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999999887655
No 162
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=24.30 E-value=1.2e+02 Score=35.05 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeeEeeeeeeccCccCCCh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKGY 829 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-G-----------------------------------~~vAElplvAT~~~yqgqG~ 829 (920)
-|..|||. .|+|||++.|... | +...||-.+-.+++||+-|.
T Consensus 55 ~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~ 134 (336)
T TIGR03244 55 GYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGN 134 (336)
T ss_pred cEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcc
Confidence 48889995 6899999876542 2 35678888889999999999
Q ss_pred hHHHHH
Q 002450 830 FQLLFA 835 (920)
Q Consensus 830 gr~Lv~ 835 (920)
|++|-.
T Consensus 135 G~LLSr 140 (336)
T TIGR03244 135 GRLLSK 140 (336)
T ss_pred hhhHHH
Confidence 987654
No 163
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=24.21 E-value=41 Score=38.66 Aligned_cols=45 Identities=20% Similarity=0.433 Sum_probs=32.7
Q ss_pred ceeecCCCCCccccccCccCcCCccCCCCCcceeecCcchhHHHHHH
Q 002450 649 TILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQ 695 (920)
Q Consensus 649 ~LLlCDQCer~YHv~CL~p~~~~~L~evP~g~WFC~~~C~~I~~~Lq 695 (920)
-++.||.|+..||..|. +.++.-.+..+...|+| ..|.....+++
T Consensus 74 ~~~~cd~C~~~~~~ec~-~v~~~~~e~p~~~~~~c-~~c~~~~~~~~ 118 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECW-EVGTAEKEAPKEDPKVC-DECKEAQDGMS 118 (345)
T ss_pred hhhcccccccccccccc-ccCchhhcCCccccccc-cccchhhhhhh
Confidence 56889999999999993 11222233445678999 89998876664
No 164
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=24.15 E-value=1.1e+02 Score=35.25 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=37.5
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeeEeeeeeeccCccCCCh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKGY 829 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-G-----------------------------------~~vAElplvAT~~~yqgqG~ 829 (920)
-|..|||. .|+|||++.|... | +...||-.+-.+|+||+-|.
T Consensus 56 ~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~ 135 (336)
T TIGR03245 56 RYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEA 135 (336)
T ss_pred cEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCc
Confidence 48889994 6899999876542 2 35678888889999999999
Q ss_pred hHHHHH
Q 002450 830 FQLLFA 835 (920)
Q Consensus 830 gr~Lv~ 835 (920)
|++|-.
T Consensus 136 G~lLSr 141 (336)
T TIGR03245 136 AELLSR 141 (336)
T ss_pred hhHHHH
Confidence 977654
No 165
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=23.77 E-value=1.2e+02 Score=35.07 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeeEeeeeeeccCccCCCh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKGY 829 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-G-----------------------------------~~vAElplvAT~~~yqgqG~ 829 (920)
.|..|||. .|+|||++.|... | +...||-.+-.+|+||+-|.
T Consensus 55 ~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~ 134 (335)
T TIGR03243 55 GYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGN 134 (335)
T ss_pred cEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCc
Confidence 48889995 6899999876532 2 35678888889999999999
Q ss_pred hHHHHH
Q 002450 830 FQLLFA 835 (920)
Q Consensus 830 gr~Lv~ 835 (920)
|++|-.
T Consensus 135 G~LLSr 140 (335)
T TIGR03243 135 GRLLSR 140 (335)
T ss_pred hhhHHH
Confidence 977654
No 166
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=23.00 E-value=89 Score=28.00 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCeEEEEEEEEEeCCeeeEeeeeeecc
Q 002450 796 NSSVVSAGILRVFGQEVAELPLVATSK 822 (920)
Q Consensus 796 ~~~vVsaAslrI~G~~vAElplvAT~~ 822 (920)
-|++||.+.+..-|..++++|++|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 379999999988888999999999764
No 167
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=22.97 E-value=4.5e+02 Score=31.03 Aligned_cols=127 Identities=16% Similarity=0.276 Sum_probs=83.0
Q ss_pred CCceEEEccCCCCCHHHHHHHHHHHHHHhhccCcccccCcCCCcchhhhccccC-----CCceeCceEEEEEeeC--CeE
Q 002450 727 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTVN--SSV 799 (920)
Q Consensus 727 ~d~~W~LL~gk~~~~e~~s~La~AL~I~~EcF~Pivd~rtgrDLI~~mVyg~~~-----~r~~f~GfY~~VLe~~--~~v 799 (920)
.+|.|.-+. .++..-|.+.-..+.|-+ +-|. |..-..-|..+| ...++.--|.+.++.. .++
T Consensus 79 ~gf~W~tld-----v~~~~~l~el~~lL~eny--VEd~----~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kL 147 (421)
T KOG2779|consen 79 TGFRWETLD-----VSDFKDLEELYNLLNENY--VEDD----DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKL 147 (421)
T ss_pred CCceeeccC-----CccHhHHHHHHhhcccCC--CCcc----ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCce
Confidence 468897552 223344667677777854 3232 222223343332 2334444466666654 477
Q ss_pred EEE-----EEEEEeCC--eeeEeeeeeeccCccCCChhHHHHHHHHHHhhhcCcc------EEEEcChhhhHHHHHhc
Q 002450 800 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDK 864 (920)
Q Consensus 800 Vsa-----AslrI~G~--~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L~~LgVe------~LvlpA~~ea~~~Wt~k 864 (920)
|+- ++|||.|. ..+||-++-++...|.+++.=.|+.+|-+...--||- -++||+--+.-.-|.+.
T Consensus 148 VaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRs 225 (421)
T KOG2779|consen 148 VAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRS 225 (421)
T ss_pred EEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhcc
Confidence 763 57899887 7899999999999999999999999998876555553 36777766666667644
No 168
>PRK10456 arginine succinyltransferase; Provisional
Probab=22.65 E-value=1.2e+02 Score=35.13 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=37.3
Q ss_pred eEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeeEeeeeeeccCccCCCh
Q 002450 788 MYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKGY 829 (920)
Q Consensus 788 fY~~VLe~--~~~vVsaAslrI~-G-----------------------------------~~vAElplvAT~~~yqgqG~ 829 (920)
.|..|||. .|+|||++.|... | +...||-.+-.+++||+-|.
T Consensus 57 ~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~ 136 (344)
T PRK10456 57 GYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGN 136 (344)
T ss_pred cEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCc
Confidence 48889994 6899999876542 2 35678888889999999999
Q ss_pred hHHHHH
Q 002450 830 FQLLFA 835 (920)
Q Consensus 830 gr~Lv~ 835 (920)
|++|-.
T Consensus 137 G~LLSr 142 (344)
T PRK10456 137 GYLLSK 142 (344)
T ss_pred hhHHHH
Confidence 977654
No 169
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=21.75 E-value=29 Score=27.20 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=19.8
Q ss_pred CcccCCCCCccCcchhcccc-ccccc
Q 002450 546 GIICHCCNSEVSPSQFEAHA-ECASL 570 (920)
Q Consensus 546 GI~CdCCn~evcPS~FEaHa-~CL~L 570 (920)
.+.|.-|+..+..+.|.+|+ .|+++
T Consensus 4 ~~~C~nC~R~v~a~RfA~HLekCmg~ 29 (33)
T PF08209_consen 4 YVECPNCGRPVAASRFAPHLEKCMGR 29 (33)
T ss_dssp EEE-TTTSSEEEGGGHHHHHHHHTCH
T ss_pred eEECCCCcCCcchhhhHHHHHHHHcc
Confidence 46799999999999999998 46653
No 170
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.74 E-value=92 Score=33.09 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=44.0
Q ss_pred CcccceeccCCc-cHHHHHHHhhcCCchhHHHHHhh-----hhcCCCccCcceecccCCC-----ccc----ccCCCCCC
Q 002450 292 RASQYICFENGK-SLLEVLRACRSVPLPMLKATLQS-----ALSSLPEEKSFACVRCKGT-----FPI----TCVGKTGP 356 (920)
Q Consensus 292 ~p~~~I~LenG~-SL~~v~~a~~~~pl~~L~~~I~~-----~ig~~~~~~~~~C~~Ck~s-----~~~----~c~~~~~p 356 (920)
.+.+|++-+... ||.|+++...+.=+..|+.+++. .-+.....+.|.|..|.+. |+. .|..+..
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~- 180 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKS- 180 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCcc-
Confidence 567887554333 99999888776655556655552 1233446677888888752 332 4444433
Q ss_pred CCCCCcccc
Q 002450 357 GPLCNSCVK 365 (920)
Q Consensus 357 ~~~C~sCl~ 365 (920)
.||..|..
T Consensus 181 -v~H~~C~~ 188 (202)
T PF13901_consen 181 -VFHKSCFR 188 (202)
T ss_pred -ccchhhcC
Confidence 66666666
No 171
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.67 E-value=29 Score=33.41 Aligned_cols=53 Identities=28% Similarity=0.702 Sum_probs=34.3
Q ss_pred cccccccCCCCCCCCCCCCceeec------CCC---CCccccccCccCcCCccCC-CCCcceeecCcchhH
Q 002450 630 SGCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKHKMADLRE-LPKGKWFCCMDCSRI 690 (920)
Q Consensus 630 ~~C~vC~~~df~~sgf~~~~LLlC------DQC---er~YHv~CL~p~~~~~L~e-vP~g~WFC~~~C~~I 690 (920)
..|..|++... +..+.| ..| ...|=-.||...-.+.+.+ +...+|.| |.|..|
T Consensus 8 ~~CHqCrqKt~-------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTL-------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRGI 70 (105)
T ss_pred CCchhhcCCCC-------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCCe
Confidence 46999987431 234456 566 7778888887653322322 45678999 799876
No 172
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=21.14 E-value=1.7e+02 Score=34.50 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCeEEEEEEEEEeCCeeeEeeeeeeccCccCCChhHHHHHHHHHHh
Q 002450 796 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLL 841 (920)
Q Consensus 796 ~~~vVsaAslrI~G~~vAElplvAT~~~yqgqG~gr~Lv~~IE~~L 841 (920)
.|+.||-..+..-|..++++|++|... .+..|+++++...|...+
T Consensus 347 kG~~vG~~~i~~~g~~i~~v~lva~~~-v~~~~~~~~~~~~~~~~~ 391 (400)
T PRK10001 347 KGQVVGTIDFQLNGKSIEQRPLIVMEN-VEEGGFFSRMWDFVMMKF 391 (400)
T ss_pred CCCEEEEEEEEECCEEEEEEEeEECCc-ccccCHHHHHHHHHHHHH
Confidence 468889999988899999999999855 677899998888776644
No 173
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.42 E-value=36 Score=40.59 Aligned_cols=35 Identities=23% Similarity=0.702 Sum_probs=26.3
Q ss_pred CCcccCCCCCccCcchhccccccccc------CCCCCCCccCccchhh
Q 002450 545 LGIICHCCNSEVSPSQFEAHAECASL------SSIPQGDWYCKYCQNM 586 (920)
Q Consensus 545 dGI~CdCCn~evcPS~FEaHa~CL~L------esIPsGdW~Cp~C~~~ 586 (920)
-.+.|+.|++ -| |..|... -.-|...|||-.|+..
T Consensus 184 rmlqC~~C~~-----~f--Hq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 184 RMLQCDKCRQ-----WY--HQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeccccc-----HH--HHHhccCCCCHhhccCccceEeehhhccc
Confidence 4466999987 46 9999752 2347889999999753
Done!